BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047840
         (445 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 533

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/445 (72%), Positives = 371/445 (83%), Gaps = 1/445 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHVVK 59
           MIRGY+ ++ P  ++ CYLDML+ G   NNYTFPPLIKAC  LG      G  VHAHVV 
Sbjct: 83  MIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVT 142

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF EDPFVVS+L+EFYSL   MGTAR LFD+ P+RDVV WT M+DGYGKMGD E+AR L
Sbjct: 143 FGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARIL 202

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE MPERNA+SWSA+MAAYSR+ DFKEVL LFR+MQE G  PNES LVSVLTACAHLGA+
Sbjct: 203 FEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGAL 262

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QGLWVHSYAK+ + + N ILATA+VDMYSKCG V SALS F+GI NKDAGAWNAMISGV
Sbjct: 263 AQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGV 322

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNGDA KSLELF++M+ +GTQPTETTFVAVLT CTHA++V++GL LFE MS+ YGVEPQ
Sbjct: 323 AMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQ 382

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHYAC+VDL+ARAGM+ EAEKFIEEKMGGLG GDANVWGA+L ACR YG IEVGNRVW+
Sbjct: 383 LEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWK 442

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KLA+MG+ D  THVLSYN+Y+EAGWDMEA +VR+LISE GMKKKPGCS+IEV+G VEEFL
Sbjct: 443 KLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEAGMKKKPGCSIIEVDGTVEEFL 502

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNL 444
           AGD  H+QA +I + + S   +  L
Sbjct: 503 AGDLSHSQAPQICKTLDSLSNIGRL 527



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 143/352 (40%), Gaps = 72/352 (20%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T   L+K C  L  L+     +HA++++    E PF +  LL             A    
Sbjct: 13  TLNSLLKKCRALSQLKQ----IHANLLQSHLPESPFAIGQLLSL-----------AATSN 57

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           +P                   F +A  +F+ +  RN   +++++  Y         +  +
Sbjct: 58  NPSF-----------------FSHACLIFQNLSLRNIFMYNSMIRGYVLSHSPTRAILCY 100

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQ--GLWVHSYAKRYHLE-------------- 195
             M   G+  N      ++ AC  LG+ ++  G  VH++   +  +              
Sbjct: 101 LDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSALIEFYS 160

Query: 196 -----------------KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
                            ++V+L TA++D Y K G V  A  +FE +  ++A +W+A+++ 
Sbjct: 161 LNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAA 220

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV-YGVE 297
            +  GD K+ L LF RM ++GT P E+  V+VLT C H   +  GL +        +   
Sbjct: 221 YSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGALAQGLWVHSYAKQCNFDSN 280

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           P L     +VD+ ++ G VE A    +    G+   DA  W A++S   + G
Sbjct: 281 PILA--TALVDMYSKCGCVESALSTFQ----GIPNKDAGAWNAMISGVAMNG 326


>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
          Length = 805

 Score =  682 bits (1761), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/445 (72%), Positives = 369/445 (82%), Gaps = 1/445 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHVVK 59
           MIRGY+ ++ P  ++ CYLDML+ G   NNYTFPPLIKAC  LG      G  VHAHVV 
Sbjct: 355 MIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHAHVVT 414

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF EDPFVVS+L+EFYSL   MGTAR LFD+ P+RDVV WT M+DGYGKMGD E+AR L
Sbjct: 415 FGFDEDPFVVSALIEFYSLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVEHARIL 474

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE MPERNA+SWSA+MAAYSR+ DFKEVL LFR+MQE G  PNES LVSVLTACAHLGA+
Sbjct: 475 FEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAGTMPNESVLVSVLTACAHLGAL 534

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QGLWVHSYAK+ + + N ILATA+VDMYSKCG V SALS F+GI NKDAGAWNAMISGV
Sbjct: 535 AQGLWVHSYAKQCNFDSNPILATALVDMYSKCGCVESALSTFQGIPNKDAGAWNAMISGV 594

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNGDA KSLELF++M+ +GTQPTETTFVAVLT CTHA++VR+GL LFE MS+ YGVEPQ
Sbjct: 595 AMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKLFEQMSSNYGVEPQ 654

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHYAC+VDL+ARAGM+ EAEKFIEEKMGGLG GDANVWGA L ACR YG IEVGNRVW+
Sbjct: 655 XEHYACLVDLMARAGMLAEAEKFIEEKMGGLGRGDANVWGAXLGACRTYGNIEVGNRVWK 714

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KLA+MG+ D  THVLSYN+Y+EAGWDMEA +VR+LISE GMKKKPGCS+IEV+G VEEFL
Sbjct: 715 KLADMGVADCGTHVLSYNLYREAGWDMEAKRVRRLISEXGMKKKPGCSIIEVDGTVEEFL 774

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNL 444
           AGD  H+QA +I + + S   +  L
Sbjct: 775 AGDLSHSQAPQICKTLDSLXNIGXL 799


>gi|356514477|ref|XP_003525932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 526

 Score =  646 bits (1666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/447 (69%), Positives = 364/447 (81%), Gaps = 3/447 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVIL---GPLENFGMFVHAHV 57
           MIRGY+Q   P  +V CYL ML  G   NNYTFPPLIKAC+ L    P    G  VH HV
Sbjct: 77  MIRGYLQCRSPLHAVSCYLSMLQNGVAVNNYTFPPLIKACIALLPSSPSNIVGRLVHGHV 136

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           VKFG   DP+VVS+ +EFYS+  ++ TAR LFD++  +DVV  T MVDGYGKMG+ ++AR
Sbjct: 137 VKFGLRNDPYVVSAFIEFYSVSREVDTARVLFDETSYKDVVLGTAMVDGYGKMGNVKSAR 196

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           E+F+KMPERNAVSWSA+MAAYSR+SDFKEVL+LF +MQ  G +PNES LV+VLTACAHLG
Sbjct: 197 EVFDKMPERNAVSWSAMMAAYSRVSDFKEVLALFTEMQNEGTEPNESILVTVLTACAHLG 256

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+TQGLWVHSYA+R+HLE N ILATA+VDMYSKCG V SALSVF+ I +KDAGAWNAMIS
Sbjct: 257 ALTQGLWVHSYARRFHLESNPILATALVDMYSKCGCVESALSVFDCIVDKDAGAWNAMIS 316

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G A+NGDA KSL+LF +M  S T+P ETTFVAVLT CTHAKMV+ GL LFE MS+VYGV 
Sbjct: 317 GEALNGDAGKSLQLFRQMAASRTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSVYGVV 376

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHYACV+DLL+RAGMVEEAEKF+EEKMGGL  GDANVWGALL+ACRI+  I VGNRV
Sbjct: 377 PRMEHYACVIDLLSRAGMVEEAEKFMEEKMGGLTAGDANVWGALLNACRIHKNIHVGNRV 436

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           W+KL +MG+TD  THVL+YNIY+EAGWD+EANKVR  I E GMKKKPGCS+IEV+  VEE
Sbjct: 437 WKKLVDMGVTDCGTHVLTYNIYREAGWDVEANKVRSRIEEVGMKKKPGCSIIEVDNEVEE 496

Query: 418 FLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           FLAGD+ H QA E+ +++ S LKM  L
Sbjct: 497 FLAGDHSHPQAQEMCKLLDSILKMGTL 523


>gi|449469438|ref|XP_004152427.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 528

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 286/442 (64%), Positives = 341/442 (77%), Gaps = 2/442 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVK 59
           MIRGY  + FPK ++ CYLD++D GF  N YTFPPLIKAC ++   L+  G  VHAHV+ 
Sbjct: 81  MIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVIV 140

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G+  D FVVS+L+EFYSL   +  AR LFDKS  +DVV WT MVDGYGK+GD E+AR L
Sbjct: 141 LGYENDAFVVSALVEFYSLF-DLKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVL 199

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MPERN +SWSA+MAAYSR+SDF+EVL LFRQMQ+  + PN+S + SVLTACAHLGAI
Sbjct: 200 FDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIASVLTACAHLGAI 259

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           TQGLW+HSYAKRY L+ N ILATA+VDMYSKCG++ SAL VFEGISNKDAGAWNAMISG 
Sbjct: 260 TQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGF 319

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM G+  KSLELFD+M+ SGTQ TE TFV++L  CTHAKMV  GL  F+ M  VY V+PQ
Sbjct: 320 AMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQ 379

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHYACVVDL+ARAGMVE+AEKF+EEKMGG    DANVWGA+LSACR Y  IE+G+R+W 
Sbjct: 380 FEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWT 439

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL+ +G+ D  T VLSYNI+ EAG +M A +VRK  SE   KK PGCSVI V+G V+EFL
Sbjct: 440 KLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARSKKIPGCSVIVVDGAVQEFL 499

Query: 420 AGDNRHAQAGEIYRVIHSFLKM 441
           AGD  H Q   I  ++    KM
Sbjct: 500 AGDLSHPQVQHICEMLGFLSKM 521


>gi|449527549|ref|XP_004170773.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 487

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/403 (66%), Positives = 318/403 (78%), Gaps = 2/403 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVK 59
           MIRGY  + FPK ++ CYLD++D GF  N YTFPPLIKAC ++   L+  G  VHAHV+ 
Sbjct: 81  MIRGYFLSRFPKQAILCYLDLMDRGFLANKYTFPPLIKACALVYRELKRIGYLVHAHVIV 140

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G+  D FVVS+L+EFYSL   +  AR LFDKS  +DVV WT MVDGYGK+GD E+AR L
Sbjct: 141 LGYENDAFVVSALVEFYSLF-DLKVARVLFDKSSGKDVVVWTVMVDGYGKVGDIESARVL 199

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MPERN +SWSA+MAAYSR+SDF+EVL LFRQMQ+  + PN+S +VSVLTACAHLGAI
Sbjct: 200 FDEMPERNVISWSAMMAAYSRVSDFREVLCLFRQMQKKNIVPNDSVIVSVLTACAHLGAI 259

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           TQGLW+HSYAKRY L+ N ILATA+VDMYSKCG++ SAL VFEGISNKDAGAWNAMISG 
Sbjct: 260 TQGLWMHSYAKRYGLDSNPILATALVDMYSKCGYIESALEVFEGISNKDAGAWNAMISGF 319

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM G+  KSLELFD+M+ SGTQ TE TFV++L  CTHAKMV  GL  F+ M  VY V+PQ
Sbjct: 320 AMTGNVVKSLELFDKMIASGTQATEATFVSILAACTHAKMVERGLEFFDQMYPVYRVQPQ 379

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHYACVVDL+ARAGMVE+AEKF+EEKMGG    DANVWGA+LSACR Y  IE+G+R+W 
Sbjct: 380 FEHYACVVDLMARAGMVEDAEKFVEEKMGGFSNVDANVWGAILSACRQYRNIEIGDRIWT 439

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402
           KL+ +G+ D  T VLSYNI+ EAG +M A +VRK  SE   KK
Sbjct: 440 KLSALGLLDGGTQVLSYNIFSEAGREMAAKEVRKKFSEARSKK 482


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/431 (43%), Positives = 274/431 (63%), Gaps = 4/431 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R +     P   +  Y  ML  GF PNNYTF  L++AC  L  L +FG+ +HA  V+ 
Sbjct: 84  MLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDL-SFGILLHAQAVRL 142

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    FV + LL  Y+  + M +AR LFD S +RDVVTWT +++GY K G    AR+LF
Sbjct: 143 GWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLF 202

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPE+NAVSWSA++  Y++I  F+E L LF  MQ  G +PN   +V  LTACA LGA+ 
Sbjct: 203 DEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALD 262

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y  R  +  + IL TA++DMY+KCG V +A  VF+ + ++D  A+ ++ISG+A
Sbjct: 263 QGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLA 322

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G +  ++E+F RM   G  P E TF+ +L+ C+   +V +GL +F++M+ +YG+EP +
Sbjct: 323 NHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVV 382

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAGM+E+A++ + E        D+ V GALL+ACR++G +E+G      
Sbjct: 383 QHYGCLVDLLGRAGMLEDAKRVVREMP---LEPDSYVLGALLNACRVHGDVELGKETVEC 439

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           LAE  +     HVL  N+Y  A    +  KVRK + E  +KK PGCS+IEV+G V EF+A
Sbjct: 440 LAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVA 499

Query: 421 GDNRHAQAGEI 431
           GD  H    EI
Sbjct: 500 GDMSHVFMDEI 510



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 5/189 (2%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD  +A  LF  +P R +  W+ ++ A++   +   VLSL++ M   G  PN      +L
Sbjct: 61  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 120

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA L  ++ G+ +H+ A R   E    +   ++ +Y+ C  + SA  +F+G  N+D  
Sbjct: 121 QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 180

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            W A+I+G A +G    + +LFD M     +    ++ A++T      + R+ L LF +M
Sbjct: 181 TWTAVINGYAKSGQVVVARQLFDEM----PEKNAVSWSAMITGYAQIGLFREALELFNDM 236

Query: 291 SAVYGVEPQ 299
             + G  P 
Sbjct: 237 Q-IAGFRPN 244


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/431 (43%), Positives = 274/431 (63%), Gaps = 4/431 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R +     P   +  Y  ML  GF PNNYTF  L++AC  L  L +FG+ +HA  V+ 
Sbjct: 59  MLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDL-SFGILLHAQAVRL 117

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    FV + LL  Y+  + M +AR LFD S +RDVVTWT +++GY K G    AR+LF
Sbjct: 118 GWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLF 177

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPE+NAVSWSA++  Y++I  F+E L LF  MQ  G +PN   +V  LTACA LGA+ 
Sbjct: 178 DEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALD 237

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y  R  +  + IL TA++DMY+KCG V +A  VF+ + ++D  A+ ++ISG+A
Sbjct: 238 QGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLA 297

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G +  ++E+F RM   G  P E TF+ +L+ C+   +V +GL +F++M+ +YG+EP +
Sbjct: 298 NHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVV 357

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAGM+E+A++ + E        D+ V GALL+ACR++G +E+G      
Sbjct: 358 QHYGCLVDLLGRAGMLEDAKRVVREMP---LEPDSYVLGALLNACRVHGDVELGKETVEC 414

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           LAE  +     HVL  N+Y  A    +  KVRK + E  +KK PGCS+IEV+G V EF+A
Sbjct: 415 LAERSLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVA 474

Query: 421 GDNRHAQAGEI 431
           GD  H    EI
Sbjct: 475 GDMSHVFMDEI 485



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 5/189 (2%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD  +A  LF  +P R +  W+ ++ A++   +   VLSL++ M   G  PN      +L
Sbjct: 36  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 95

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA L  ++ G+ +H+ A R   E    +   ++ +Y+ C  + SA  +F+G  N+D  
Sbjct: 96  QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 155

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            W A+I+G A +G    + +LFD M     +    ++ A++T      + R+ L LF +M
Sbjct: 156 TWTAVINGYAKSGQVVVARQLFDEM----PEKNAVSWSAMITGYAQIGLFREALELFNDM 211

Query: 291 SAVYGVEPQ 299
             + G  P 
Sbjct: 212 Q-IAGFRPN 219


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 184/436 (42%), Positives = 275/436 (63%), Gaps = 8/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +++ N    ++  Y +ML  GF PNNYTF  +++AC    P+   G+  HA V+K 
Sbjct: 81  IIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSPV---GLASHAQVIKL 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    FV++ L+  Y+    +  AR LFD S  RDV+TWT +++GY K G  E ARELF
Sbjct: 138 GWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELF 197

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPERN VSWSA++  Y  +  F+E L LF  +Q  G++PN +G+V  LTAC++LG++ 
Sbjct: 198 DQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLD 257

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H+Y  R   E + +L TA+VDMY+KCG +  A SVFE + +KDA A+ ++ISG+A
Sbjct: 258 HGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLA 317

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G +  +++LF RM      P E TF+ VL+ C+   +V +GL +F  MS VYG+EP +
Sbjct: 318 NHGQSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGV 377

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG++EEA++ + E        D+ V GALL++CR++G +E+G      
Sbjct: 378 QHYGCMVDLLGRAGLLEEAKRLVREMP---MEPDSYVLGALLNSCRVHGDVELGKETVES 434

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E G+     HVL  N+Y  +  WD    KVRK +    +KK PGCS IE++G V EF+
Sbjct: 435 LVERGLDHGGVHVLLSNMYASSNQWDWVV-KVRKEMGAKKVKKVPGCSSIEIDGSVSEFI 493

Query: 420 AGDNRHAQAGEIYRVI 435
           AGD  + +  ++  V+
Sbjct: 494 AGDMSYLRVEDVMLVL 509



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 58/281 (20%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
            D  +A +LF  +P R    W+ I+  +   ++    LSL++ M + G  PN      VL
Sbjct: 58  ADISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVL 117

Query: 171 TAC---------AHLGAITQGLW----------VHSYAKRYHLE-----------KNVIL 200
            AC         +H   I  G W          +H YA    +E           ++VI 
Sbjct: 118 RACTDNSPVGLASHAQVIKLG-WESYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVIT 176

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA+++ Y K GHV  A  +F+ +  ++  +W+AMI+G    G  +++LELF+ +  +G 
Sbjct: 177 WTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGL 236

Query: 261 QPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           +P     V  LT C+           HA + R+G  L      V G          +VD+
Sbjct: 237 RPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTEL----DRVLG--------TALVDM 284

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
            A+ G +E A    E+    +   DA  + +L+S    +G+
Sbjct: 285 YAKCGCIEIACSVFEK----MPDKDAFAFTSLISGLANHGQ 321


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 180/440 (40%), Positives = 270/440 (61%), Gaps = 4/440 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY  +  P+ ++  Y  ML      N YTFP L+KAC  +  LE     +HAH++K 
Sbjct: 89  MIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQ-IHAHIIKM 147

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG + +  +SLL  YS    + +AR LFD+   RD V+W +M+DGY K G+ E A E+F
Sbjct: 148 GFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIF 207

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPERN +SW+++++        KE L+LF +MQ  G+K +   LVS L ACA LG + 
Sbjct: 208 NHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 267

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y K++ +E + IL   ++DMY+KCG +  A+ VF  +  K    W AMISG A
Sbjct: 268 QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 327

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +++LE F +M  +G +P + TF  +LT C+HA +V +   LFE+M  ++G +P +
Sbjct: 328 IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSI 387

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EAE+ IE         +A +WGALL+AC I+G +E+G ++ + 
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIENMP---VKPNAAIWGALLNACHIHGNLELGKQIGKI 444

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L ++       ++   +I+  AG   +A +VR+ + E G+ K PGCSVI VNG   EFLA
Sbjct: 445 LIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLA 504

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
           GD  H Q  EI  ++   ++
Sbjct: 505 GDESHPQIKEIDHMLEQIVE 524



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 27/310 (8%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK--MGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +H  ++K G   D    S LL F +  +   +  AR +FD+    +   W TM+ GY   
Sbjct: 37  IHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNS 96

Query: 111 GDFENARELFEKM----PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
            + E A  L+  M       NA ++  ++ A S +S  +E   +   + ++G        
Sbjct: 97  KEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT 156

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
            S+L   +  G I     +         +++ +   +++D Y+KCG +  A  +F  +  
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVD----QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPE 212

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--L 284
           ++  +W +MISG    G  K++L LF RM  +G +      V+ L  C    ++  G  +
Sbjct: 213 RNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWI 272

Query: 285 NLFENMSAVYGVEPQLEHYACV-VDLLARAGMVEEA-EKF--IEEKMGGLGGGDANVWGA 340
           + +     +  ++P L    CV +D+ A+ G +EEA E F  +EEK         +VW A
Sbjct: 273 HAYIKKHEIE-IDPIL---GCVLIDMYAKCGDLEEAIEVFRKMEEK-------GVSVWTA 321

Query: 341 LLSACRIYGK 350
           ++S   I+G+
Sbjct: 322 MISGYAIHGR 331



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 146/315 (46%), Gaps = 19/315 (6%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           S++ E   +  +M     + D+ P   ++ +    +     G    AR +F+++   N  
Sbjct: 29  SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNS----GSLAYARTVFDRIFRPNTF 84

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
            W+ ++  YS   + +E L L+  M    +  N      +L AC+ + A+ +   +H++ 
Sbjct: 85  MWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHI 144

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +      +    +++++YSK G + SA  +F+ +  +D  +WN+MI G    G+ + + 
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAY 204

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           E+F+ M +        ++ ++++ C  A   ++ LNLF  M    G+  +L++ A V  L
Sbjct: 205 EIFNHMPERNI----ISWTSMISGCVGAGKPKEALNLFHRMQTA-GI--KLDNVALVSTL 257

Query: 310 LARAGM-VEEAEKFIEEKMGGLGGGDANVWGALL----SACRIYGKIEVGNRVWRKLAEM 364
            A A + V +  K+I   +         + G +L    + C   G +E    V+RK+ E 
Sbjct: 258 QACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKC---GDLEEAIEVFRKMEEK 314

Query: 365 GITDFSTHVLSYNIY 379
           G++ ++  +  Y I+
Sbjct: 315 GVSVWTAMISGYAIH 329


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/440 (40%), Positives = 269/440 (61%), Gaps = 4/440 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY  +  P+ ++  Y  ML      N YTFP L+KAC  +   E     +HAH++K 
Sbjct: 89  MIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQ-IHAHIIKM 147

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG + +  +SLL  YS    + +AR LFD+   RD V+W +M+DGY K G+ E A E+F
Sbjct: 148 GFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIF 207

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPERN +SW+++++        KE L+LF +MQ  G+K +   LVS L ACA LG + 
Sbjct: 208 NHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 267

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y K++ +E + IL   ++DMY+KCG +  A+ VF  +  K    W AMISG A
Sbjct: 268 QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 327

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +++LE F +M  +G +P + TF  +LT C+HA +V +   LFE+M  ++G +P +
Sbjct: 328 IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSI 387

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EAE+ IE         +A +WGALL+AC I+G +E+G ++ + 
Sbjct: 388 EHYGCMVDLLGRAGLLKEAEELIENMP---VKPNAAIWGALLNACHIHGNLELGKQIGKI 444

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L ++       ++   +I+  AG   +A +VR+ + E G+ K PGCSVI VNG   EFLA
Sbjct: 445 LIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLA 504

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
           GD  H Q  EI  ++   ++
Sbjct: 505 GDESHPQIKEIDHMLEQIVE 524



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 140/310 (45%), Gaps = 27/310 (8%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK--MGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +H  ++K G   D    S LL F +  +   +  AR +FD+    +   W TM+ GY   
Sbjct: 37  IHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNS 96

Query: 111 GDFENARELFEKM----PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
            + E A  L+  M       NA ++  ++ A S +S  +E   +   + ++G        
Sbjct: 97  KEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTT 156

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
            S+L   +  G I     +         +++ +   +++D Y+KCG +  A  +F  +  
Sbjct: 157 NSLLNVYSKSGDIKSARLLFDQVD----QRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPE 212

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--L 284
           ++  +W +MISG    G  K++L LF RM  +G +      V+ L  C    ++  G  +
Sbjct: 213 RNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWI 272

Query: 285 NLFENMSAVYGVEPQLEHYACV-VDLLARAGMVEEA-EKF--IEEKMGGLGGGDANVWGA 340
           + +     +  ++P L    CV +D+ A+ G +EEA E F  +EEK         +VW A
Sbjct: 273 HAYIKKHEIE-IDPIL---GCVLIDMYAKCGDLEEAIEVFRKMEEK-------GVSVWTA 321

Query: 341 LLSACRIYGK 350
           ++S   I+G+
Sbjct: 322 MISGYAIHGR 331



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 69/315 (21%), Positives = 145/315 (46%), Gaps = 19/315 (6%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           S++ E   +  +M     + D+ P   ++ +    +     G    AR +F+++   N  
Sbjct: 29  SNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNS----GSLAYARTVFDRIFRPNTF 84

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
            W+ ++  YS   + +E L L+  M    +  N      +L AC+ + A  +   +H++ 
Sbjct: 85  MWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHI 144

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +      +    +++++YSK G + SA  +F+ +  +D  +WN+MI G    G+ + + 
Sbjct: 145 IKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAY 204

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           E+F+ M +        ++ ++++ C  A   ++ LNLF  M    G+  +L++ A V  L
Sbjct: 205 EIFNHMPERNI----ISWTSMISGCVGAGKPKEALNLFHRMQTA-GI--KLDNVALVSTL 257

Query: 310 LARAGM-VEEAEKFIEEKMGGLGGGDANVWGALL----SACRIYGKIEVGNRVWRKLAEM 364
            A A + V +  K+I   +         + G +L    + C   G +E    V+RK+ E 
Sbjct: 258 QACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKC---GDLEEAIEVFRKMEEK 314

Query: 365 GITDFSTHVLSYNIY 379
           G++ ++  +  Y I+
Sbjct: 315 GVSVWTAMISGYAIH 329


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 183/440 (41%), Positives = 272/440 (61%), Gaps = 4/440 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           + RGY++    +  +F Y  ML     PN +T+PPLI+AC I   +E  G  +HAHV+KF
Sbjct: 91  IFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEE-GKQIHAHVLKF 149

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D F +++L+  Y     +  AR +FD  P RDVV+WT+++ GY + G  + ARE+F
Sbjct: 150 GFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVF 209

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E MPERN+VSW+A++AAY + +   E  +LF +M+   +  ++    S+L+AC  LGA+ 
Sbjct: 210 ELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALE 269

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H Y ++  +E +  LAT V+DMY KCG +  A  VF  +  K   +WN MI G+A
Sbjct: 270 QGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLA 329

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  + ++ELF  M +    P   TFV VL+ C H+ +V +G + F+ M+ V G++P +
Sbjct: 330 MHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGM 389

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EH+ C+VDLL RAG++EEA K I E        DA V GAL+ ACRI+G  E+G ++ +K
Sbjct: 390 EHFGCMVDLLGRAGLLEEARKLINEMP---VNPDAGVLGALVGACRIHGNTELGEQIGKK 446

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   +   +VL  N+Y  AG   +  KVRKL+++ G+KK PG S+IE    V+EF+A
Sbjct: 447 VIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIA 506

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
           G   H QA EIY  +   L+
Sbjct: 507 GGRAHPQAKEIYAKLDEILE 526



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 163/404 (40%), Gaps = 79/404 (19%)

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
            ++ L +++S + ++G        S D D +          K GD   A E+F+K+P  +
Sbjct: 32  TMAELKQYHSQIIRLGL-------SADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPD 84

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           A  ++ I   Y R    +  + ++ +M    + PN+     ++ AC    AI +G  +H+
Sbjct: 85  AYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHA 144

Query: 188 YAKRY-------------HL------------------EKNVILATAVVDMYSKCGHVHS 216
           +  ++             H+                  +++V+  T+++  YS+ G V  
Sbjct: 145 HVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDK 204

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT- 275
           A  VFE +  +++ +WNAMI+    +    ++  LFDRM        +    ++L+ CT 
Sbjct: 205 AREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTG 264

Query: 276 ----------HAKMVRDGLNL-----------------FENMSAVYGVEPQ--LEHYACV 306
                     H  + + G+ L                  E  S V+   PQ  +  + C+
Sbjct: 265 LGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCM 324

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM-- 364
           +  LA  G  E A +  +E    +   D   +  +LSAC   G +E G   ++ + E+  
Sbjct: 325 IGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLG 384

Query: 365 ---GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405
              G+  F   V   ++   AG   EA   RKLI+E  +    G
Sbjct: 385 LKPGMEHFGCMV---DLLGRAGLLEEA---RKLINEMPVNPDAG 422


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  361 bits (926), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 190/437 (43%), Positives = 274/437 (62%), Gaps = 10/437 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLEN--FGMFVHAHVV 58
           +IRG   +  P+ S   Y+  L  G  P+N T P L+KAC     LEN   GM  H   +
Sbjct: 88  LIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKAC---AQLENAPMGMQTHGQAI 144

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GF +D +V +SL+  Y+ V  +  AR++F +    DVV+WT M+ GY + GD ++ARE
Sbjct: 145 KHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARE 204

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF++MPERN V+WS +++ Y+R + F++ +  F  +Q  G+  NE+ +V V+++CAHLGA
Sbjct: 205 LFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGA 264

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G   H Y  R  L  N+IL TAVVDMY++CG+V  A+ VFE +  KD   W A+I+G
Sbjct: 265 LAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAG 324

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AM+G A+K+L  F  M K G  P + TF AVLT C+HA MV  GL +FE+M   +GVEP
Sbjct: 325 LAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEP 384

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C+VDLL RAG + +AEKF+   +      +A +W ALL ACRI+  +EVG RV 
Sbjct: 385 RLEHYGCMVDLLGRAGKLRKAEKFV---LKMPVKPNAPIWRALLGACRIHKNVEVGERVG 441

Query: 359 RKLAEMGITDFSTH-VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           + L EM   ++S H VL  NIY  A    +   +R+++ + G++K PG S+IE++G V E
Sbjct: 442 KILLEMQ-PEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHE 500

Query: 418 FLAGDNRHAQAGEIYRV 434
           F  GD  H +  +I R+
Sbjct: 501 FTIGDKTHPEIEKIERI 517



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 50/277 (18%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           N   ++A++   S   + +     + +    G+ P+      ++ ACA L     G+  H
Sbjct: 81  NLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTH 140

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
             A ++  E++  +  ++V MY+  G +++A SVF+ +   D  +W  MI+G    GDAK
Sbjct: 141 GQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAK 200

Query: 247 KSLELFDRMVK-------------------------------SGTQPTETTFVAVLTTCT 275
            + ELFDRM +                                G    ET  V V+++C 
Sbjct: 201 SARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCA 260

Query: 276 HAKMVRDGLNLFE-------NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           H   +  G    E       +++ + G          VVD+ AR G VE+A    E+   
Sbjct: 261 HLGALAMGEKAHEYVMRNKLSLNLILG--------TAVVDMYARCGNVEKAVMVFEQ--- 309

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            L   D   W AL++   ++G  E     + ++A+ G
Sbjct: 310 -LPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKG 345


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  361 bits (926), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 185/474 (39%), Positives = 277/474 (58%), Gaps = 39/474 (8%)

Query: 1   MIRGYMQANFPKLS-VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG   +N   +  +  Y  ML  G  P+NYT P ++KAC     +   G  VH   +K
Sbjct: 110 IIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE-GEEVHGQAIK 168

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG-------- 111
            G   D +V ++L+  Y++   + +AR +FD SP RD+V+WTTM+ GY KMG        
Sbjct: 169 MGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGL 228

Query: 112 --------------------------DFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                                     D   AR++F++MP +N VSW+++++  ++   FK
Sbjct: 229 YIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFK 288

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E L +FR+MQ +G+KP++  LV+VL +CA+LG +  G WVH+Y  R  +  +  +  A+V
Sbjct: 289 ESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALV 348

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY+KCG +  A  VF+ ++ KD  ++ AMI G+AM+G   K+L+LF  M K G +P E 
Sbjct: 349 DMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEV 408

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           TFV VLT C+H  +V +G   FE+MS +Y + PQLEHY C+VDLL RAG++ EAE+FI  
Sbjct: 409 TFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRN 468

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385
                   DA V GALL AC+I+GK+E+G  V +K+ ++       +VL  NIY  A   
Sbjct: 469 MP---IEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRW 525

Query: 386 MEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
            +A K+RK + E  ++K PGCS IE++GV+ EF  GD  H +  EIY+++   +
Sbjct: 526 RDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIM 579


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  360 bits (925), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 172/432 (39%), Positives = 264/432 (61%), Gaps = 4/432 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y  +N P+ ++  Y  ML      N+YTFP L+KAC  L   E     +HAH++K 
Sbjct: 81  MLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQ-IHAHIIKR 139

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG + +  +SLL  Y++   + +A  LF++ P RD+V+W  M+DGY K G+ + A ++F
Sbjct: 140 GFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIF 199

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE+N +SW+ ++  + RI   KE LSL +QM   G+KP+   L   L+ACA LGA+ 
Sbjct: 200 QAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALE 259

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y ++  ++ + +L   + DMY KCG +  AL VF  +  K   AW A+I G+A
Sbjct: 260 QGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLA 319

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +++L+ F +M K+G  P   TF A+LT C+HA +  +G +LFE+MS+VY ++P +
Sbjct: 320 IHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSM 379

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDL+ RAG+++EA +FIE         +A +WGALL+AC+++   E+G  + + 
Sbjct: 380 EHYGCMVDLMGRAGLLKEAREFIESMP---VKPNAAIWGALLNACQLHKHFELGKEIGKI 436

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+       ++   +IY  AG   +  +VR  I   G+   PGCS I +NGVV EF A
Sbjct: 437 LIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVHEFFA 496

Query: 421 GDNRHAQAGEIY 432
           GD  H    EIY
Sbjct: 497 GDGSHPHIQEIY 508



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 142/334 (42%), Gaps = 25/334 (7%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
             PN      L++ C  +  L    M +H  ++K G   +   VS+LL  Y+ +  +  A
Sbjct: 6   LPPNTEQTQALLERCSNMKEL----MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLA 61

Query: 86  --RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE----RNAVSWSAIMAAYS 139
             R +FD     + V W TM+  Y    D E A  L+ +M       N+ ++  ++ A S
Sbjct: 62  YTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACS 121

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
            +S F+E   +   + + G         S+L   A  G I     + +        ++++
Sbjct: 122 ALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLP----TRDIV 177

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
               ++D Y K G++  A  +F+ +  K+  +W  MI G    G  K++L L  +M+ +G
Sbjct: 178 SWNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAG 237

Query: 260 TQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVV-DLLARAGMV 316
            +P   T    L+ C     +  G  ++ +   + +  ++P L    CV+ D+  + G +
Sbjct: 238 IKPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEI-KIDPVL---GCVLTDMYVKCGEM 293

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           E+A     +    L       W A++    I+GK
Sbjct: 294 EKALLVFSK----LEKKCVCAWTAIIGGLAIHGK 323


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/431 (41%), Positives = 268/431 (62%), Gaps = 4/431 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M++ +++ N    +   Y  ML+  + PNN+TF  +I+AC+ +  L+  G+  H  VVKF
Sbjct: 83  MMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQ-MGLCFHGQVVKF 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    FV + L+  Y+    M  AR +FD S  RDVVTWT ++ GY   G    ARELF
Sbjct: 142 GWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELF 201

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPE+N VSW A++A Y RI  FKE L +F  MQ  G + N + +V  LTACA LGA+ 
Sbjct: 202 DRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALD 261

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y KR+H+  + +L TA++DMY+KCG +  A SVF+ + ++D  A+  +ISG+A
Sbjct: 262 QGRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLA 321

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +  ++ +++LF+RM   G  P E TFV VL  C+   MV +GL +FE+MS  Y +EPQ+
Sbjct: 322 NHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQI 381

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG +EEA++ + E        D+   GALL ACR++G +++G  +   
Sbjct: 382 QHYGCLVDLLGRAGKIEEAKQVVREMP---LQPDSYTLGALLDACRVHGDVQLGEEMVDS 438

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L +  +     HVL  N+Y  A    +A+K+RK + +  ++K PGCS IEVNG V EF+ 
Sbjct: 439 LVQRCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVNGTVCEFVT 498

Query: 421 GDNRHAQAGEI 431
           GD  +A   +I
Sbjct: 499 GDRSYALEEDI 509



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  LF  +  ++   W+ +M A+   ++     SL++ M E    PN      V+ AC  
Sbjct: 65  AERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACID 124

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           +  +  GL  H    ++  E    +   ++ +Y+ CG +  A ++F+    +D   W  +
Sbjct: 125 VFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCL 184

Query: 236 ISGVAMNGDAKKSLELFDRM 255
           ISG   +G    + ELFDRM
Sbjct: 185 ISGYLNSGQVLIARELFDRM 204


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 187/445 (42%), Positives = 281/445 (63%), Gaps = 11/445 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR    +  P  ++  Y  ML  G +P++ T+P +IKAC     +  FG+ VH HVVK 
Sbjct: 137 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN-ESSVTWFGLLVHTHVVKS 195

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D ++VSSL+  Y+    +G A+ LF+    RDVV+W  M+DGY K  +  +AR +F
Sbjct: 196 GFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVF 255

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M  R+ +SW+ ++  Y+      E L+LF QM+ VG+KP E+ +VS+L+ACAHLGA+ 
Sbjct: 256 DRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALD 315

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +GL +H+Y     +E N I+ TA+VDMY+KCG +  A  VF  + +KD  AWN +I+G+A
Sbjct: 316 KGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMA 375

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G+ K++ +LF  M ++G +P + TFVA+L+ C+HA MV +G  L + MS+ YG+EP++
Sbjct: 376 IHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKV 435

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWR 359
           EHY CV+DLLARAG +EEA + I    G +    + +  GALL  CRI+G  E+G  V +
Sbjct: 436 EHYGCVIDLLARAGFLEEAMELI----GTMPMEPNPSALGALLGGCRIHGNFELGEMVGK 491

Query: 360 KLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L  +       ++L  NIY  A  WD +A KVR L+   G+ K PG SVIE+ G+V  F
Sbjct: 492 RLINLQPCHSGRYILLSNIYAAAKKWD-DARKVRNLMKVNGISKVPGVSVIELKGMVHRF 550

Query: 419 LAGDNRHAQAGEIYRV---IHSFLK 440
           +AGD  H ++ +IY     IH+ LK
Sbjct: 551 VAGDWSHPESNKIYEKLNEIHTRLK 575



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 148/342 (43%), Gaps = 51/342 (14%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A+ +F  +       +++++ A S      E L L+  M + G+KP+      V+ AC  
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA- 234
                 GL VH++  +   E +  + ++++ +Y+    + +A  +F   S +D  +WNA 
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238

Query: 235 ------------------------------MISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
                                         MI+G A+ G   ++L LFD+M   G +PTE
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTE 298

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAE 320
            T V++L+ C H   +  GL+L       Y  + ++E  + V    VD+ A+ G +  A 
Sbjct: 299 ATVVSLLSACAHLGALDKGLHLH-----TYINDNRIEVNSIVGTALVDMYAKCGKISLAT 353

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIY 379
           +        +   D   W  +++   I+G ++   ++++++ E G+  +  T V   +  
Sbjct: 354 QV----FNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSAC 409

Query: 380 KEAGWDMEANKVRKLISET-GMKKKPGCSVIEVNGVVEEFLA 420
             AG   E  K+   +S + G++ K     +E  G V + LA
Sbjct: 410 SHAGMVDEGQKLLDCMSSSYGIEPK-----VEHYGCVIDLLA 446


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 180/450 (40%), Positives = 272/450 (60%), Gaps = 23/450 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M +GY +   PKL V  YL+ML+   +P+ YT+P L K       L+  G  +H HVVK+
Sbjct: 85  MFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQ-LGRELHCHVVKY 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM---------- 110
           G   + F  ++L+  YSL   +  AR +FD S   DVVTW  M+ GY ++          
Sbjct: 144 GLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAI 203

Query: 111 -------GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
                  G  + AR+ F KMPER+ VSW+A++  Y R++ +KE L LFR+MQ   +KP+E
Sbjct: 204 VTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDE 263

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
             +VSVLTACA LGA+  G W+ +Y  +  ++ +  +  A++DMY KCG+V  ALS+F  
Sbjct: 264 FTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNT 323

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +  +D   W AM+ G+A+NG  +++L +F +M+K+   P E T+V VL+ CTH  MV +G
Sbjct: 324 LPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEG 383

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
              F +M+A +G+EP + HY C+VDLL +AG ++EA + I+         ++ VWGALL 
Sbjct: 384 KKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMP---MKPNSIVWGALLG 440

Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKK 402
           ACRI+   E+  R   ++ E+   + + +VL  NIY     WD +  ++R+++ + G+KK
Sbjct: 441 ACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWD-KLRELRQVMMDRGIKK 499

Query: 403 KPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
            PGCS+IE+NG+V EF+AGD  H Q  EIY
Sbjct: 500 TPGCSLIEMNGIVHEFVAGDQSHPQTKEIY 529



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 27/248 (10%)

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           + GD   AR+LF+ +PE +  SW+ +   YSRI+  K  +SL+ +M E  +KP+      
Sbjct: 60  EFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPF 119

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +        A+  G  +H +  +Y L+ NV    A+++MYS CG +  A  +F+     D
Sbjct: 120 LFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSD 179

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
              WNAMISG             ++R+ K        ++ A++T   +   V      F 
Sbjct: 180 VVTWNAMISG-------------YNRIKKD-----VISWTAIVTGFVNTGQVDAARKYFH 221

Query: 289 NMSAVYGVEPQLEH--YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
            M       P+ +H  +  ++D   R    +EA     E        D     ++L+AC 
Sbjct: 222 KM-------PERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACA 274

Query: 347 IYGKIEVG 354
             G +E+G
Sbjct: 275 QLGALELG 282



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 102/442 (23%), Positives = 176/442 (39%), Gaps = 66/442 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVH--KMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +H+  +K G   +P + + +L F        M  AR LFD  P+  V +W  M  GY ++
Sbjct: 33  IHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRI 92

Query: 111 GDFENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN---E 163
              +    L+ +M ERN      ++  +   ++R    +    L   + + G+  N    
Sbjct: 93  ACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAH 152

Query: 164 SGLVSVLTACAHLGAITQGL-----------WVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           + L+++ + C  L  + +G+           W    +    ++K+VI  TA+V  +   G
Sbjct: 153 NALINMYSLCG-LIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTG 211

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            V +A   F  +  +D  +W AMI G       K++L LF  M  S  +P E T V+VLT
Sbjct: 212 QVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLT 271

Query: 273 TCTHAKMVRDG----------------------LNLF------ENMSAVYGVEPQLEHY- 303
            C     +  G                      ++++      E   +++   PQ + + 
Sbjct: 272 ACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFT 331

Query: 304 -ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL- 361
              +V  LA  G  EEA     + +      D   +  +LSAC   G ++ G + +  + 
Sbjct: 332 WTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMT 391

Query: 362 AEMGITDFSTHV-LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           A  GI     H     ++  +AG   EA+++ K      M  KP       N +V   L 
Sbjct: 392 ARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIK-----NMPMKP-------NSIVWGALL 439

Query: 421 GDNR-HAQAGEIYRVIHSFLKM 441
           G  R H  A    R I   L++
Sbjct: 440 GACRIHKDAEMAERAIEQILEL 461


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/469 (40%), Positives = 276/469 (58%), Gaps = 41/469 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+  ++ N P  ++  Y +M+   F PN YT+P ++KAC   G +   G+ VHAH+VK 
Sbjct: 108 MIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAE-GVQVHAHLVKH 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD-KSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G G D  ++SS +  Y+   ++  AR + D K  + D V W  M+DGY + G+ E AREL
Sbjct: 167 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 226

Query: 120 FEKMP--------------------------------ERNAVSWSAIMAAYSRISDFKEV 147
           FE MP                                ER+ +SWSA++  Y +   F E 
Sbjct: 227 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 286

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L +F QMQ+  ++P +  L SVL+ACA+LGA+ QG W+H+YAKR  ++ + +L T++VDM
Sbjct: 287 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 346

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG +  A  VFE +SNK+  +WNAMI G+AM+G A+ +++LF +M      P E TF
Sbjct: 347 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITF 403

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V VL  C H  +V+ GL +F +M   YGVEPQ+EHY C+VDLL RAG++ EAEK +    
Sbjct: 404 VGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 463

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
                    VWGALL ACR +G +E+G RV + L E+   +   + L  NIY +AG   E
Sbjct: 464 ---TEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 520

Query: 388 ANKVRKLISETGMKKKPGCSVIEV-NGVVEEFLAGDNRHAQAGEIYRVI 435
             +VRKL+ E G+K  PG S+I++  G V +F+ GD  H Q  +IY+++
Sbjct: 521 VGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQML 569



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 129/303 (42%), Gaps = 37/303 (12%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA +++ G  +D ++  SL++ Y+ V    T R L                        F
Sbjct: 54  HALILRTGHLQDSYIAGSLVKSYANV---STNRYL-----------------------SF 87

Query: 114 ENARELFEKMPERNAVSWSA-IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           E++  +F+ + + N   W+  I         FK +L L+ +M     +PN+    +VL A
Sbjct: 88  ESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAIL-LYYEMMVAHFRPNKYTYPAVLKA 146

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGA 231
           C+  G + +G+ VH++  ++ L  +  + ++ + MY+  G +  A  + +    + DA  
Sbjct: 147 CSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVC 206

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WNAMI G    G+ + + ELF+ M       T    ++  + C   ++ R+    F+ M 
Sbjct: 207 WNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE---FFDEMK 263

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
                E     ++ ++D   + G   EA +   +           V  ++LSAC   G +
Sbjct: 264 -----ERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGAL 318

Query: 352 EVG 354
           + G
Sbjct: 319 DQG 321


>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 491

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 173/414 (41%), Positives = 259/414 (62%), Gaps = 6/414 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR + + N P+ ++  + +ML   F PNNYT+  L KAC  L  L   G+  H   +K 
Sbjct: 82  VIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLY-LGLACHCQSIKL 140

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    FV + L+  +++   M +AR LFD S +RDV+TWT +++GY + G     RELF
Sbjct: 141 GWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELF 200

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMPERN+VSWSA++  Y R+  F+E L LF  M   G  PN +G+V  + ACA LGA+ 
Sbjct: 201 DKMPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALD 260

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H Y KR  ++ + ++  A++DMY+KCG +  A S+F  + N+D   +  +ISG+A
Sbjct: 261 QGRWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLA 320

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G +  ++ELF+RM   G  P E TFV+VL  C+   +V  GL +FENMS +YG EPQ+
Sbjct: 321 NHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQV 380

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG +EEA+K ++E        D+ V GALL+A R+YG +E+G      
Sbjct: 381 QHYGCLVDLLGRAGKLEEAKKLVKEMP---MKPDSYVLGALLNASRVYGDVELGEETVES 437

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           LA++ +     HV+  N+Y  A  WD E  +VR+ + +  ++K PGCS+I+V+G
Sbjct: 438 LAQLSLDHSGVHVVLSNMYASANKWD-EVARVRRGMGDKKVRKVPGCSLIKVDG 490



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 5/208 (2%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
             +A  LF  +  R+   W+ ++ A++  ++ ++ + LF+ M      PN      +  A
Sbjct: 61  LSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKA 120

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C  L  +  GL  H  + +   E    +   +V M++  G + SA  +F+  SN+D   W
Sbjct: 121 CTDLNNLYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITW 180

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            A+I+G    G      ELFD+M     +    ++ A++T         + L LF  M  
Sbjct: 181 TALINGYVRAGQVLIGRELFDKM----PERNSVSWSAMITGYVRVGFFEEALELFNAM-L 235

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAE 320
           + G  P      C ++  A  G +++  
Sbjct: 236 ISGFWPNHAGIVCAINACASLGALDQGR 263


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 189/469 (40%), Positives = 275/469 (58%), Gaps = 41/469 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+  ++ N P  ++  Y +M+     PN YT+P ++KAC   G +   G+ VHAH+VK 
Sbjct: 109 MIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAE-GVQVHAHLVKH 167

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD-KSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G G D  ++SS +  Y+   ++  AR + D K  + D V W  M+DGY + G+ E AREL
Sbjct: 168 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAAREL 227

Query: 120 FEKMP--------------------------------ERNAVSWSAIMAAYSRISDFKEV 147
           FE MP                                ER+ +SWSA++  Y +   F E 
Sbjct: 228 FEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEA 287

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L +F QMQ+  ++P +  L SVL+ACA+LGA+ QG W+H+YAKR  ++ + +L T++VDM
Sbjct: 288 LEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDM 347

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG +  A  VFE +SNK+  +WNAMI G+AM+G A+ +++LF +M      P E TF
Sbjct: 348 YAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITF 404

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V VL  C H  +V+ GL +F +M   YGVEPQ+EHY C+VDLL RAG++ EAEK +    
Sbjct: 405 VGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIP 464

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
                    VWGALL ACR +G +E+G RV + L E+   +   + L  NIY +AG   E
Sbjct: 465 ---TEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEE 521

Query: 388 ANKVRKLISETGMKKKPGCSVIEV-NGVVEEFLAGDNRHAQAGEIYRVI 435
             +VRKL+ E G+K  PG S+I++  G V +F+ GD  H Q  +IY+++
Sbjct: 522 VGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQML 570



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 129/303 (42%), Gaps = 37/303 (12%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA +++ G  +D ++  SL++ Y+ V    T R L                        F
Sbjct: 55  HALILRTGHLQDSYIAGSLVKSYANV---STNRYL-----------------------SF 88

Query: 114 ENARELFEKMPERNAVSWSA-IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           E++  +F+ + + N   W+  I         FK +L L+ +M     +PN+    +VL A
Sbjct: 89  ESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAIL-LYYEMVVAHSRPNKYTYPAVLKA 147

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGA 231
           C+  G + +G+ VH++  ++ L  +  + ++ + MY+  G +  A  + +    + DA  
Sbjct: 148 CSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVC 207

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WNAMI G    G+ + + ELF+ M       T    ++  + C   ++ R+    F+ M 
Sbjct: 208 WNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVARE---FFDEMK 264

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
                E     ++ ++D   + G   EA +   +           V  ++LSAC   G +
Sbjct: 265 -----ERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGAL 319

Query: 352 EVG 354
           + G
Sbjct: 320 DQG 322


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 176/446 (39%), Positives = 266/446 (59%), Gaps = 13/446 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y  +N P+ ++  Y  ML      N YTFP L+KAC  L  L      +H  ++K 
Sbjct: 82  MIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQ-IHVQIIKR 140

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG + +  +SLL  Y++   + +A  LFD  P RD+V+W TM+DGY K G+ E A ++F
Sbjct: 141 GFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIF 200

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE+N +SW++++  + R    KE L L +QM   G+KP++  L   L+ACA LGA+ 
Sbjct: 201 QAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALE 260

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y  +  ++ + +L  A++DMY KCG +  AL VF  +  K    W A+I G A
Sbjct: 261 QGKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFA 320

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G   ++L+ F +M K+G +PT  TF AVLT C+H  +V +G +LFE+MS  Y ++P +
Sbjct: 321 VHGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVM 380

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG ++EA++F+E         +A +WG+LL+AC ++  +E+G  + + 
Sbjct: 381 EHYGCMVDLLGRAGFLKEAKEFVESMP---IKPNAAIWGSLLNACHLHKHLELGKEIGKF 437

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+       ++   +I+  AG WD EA++VR  I   G+   PGCS I +NGV  EF 
Sbjct: 438 LIELDPEHDGRYIHLASIHAAAGEWD-EASQVRSHIKNKGLLNLPGCSTITLNGVAHEFF 496

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNLV 445
           AG   H    E+Y        MSNL+
Sbjct: 497 AGAEPHPHVREMY-------DMSNLI 515



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFEN---ARELFEKMPERNAVSWSAIMAAYSRISDF 144
           L  K   R  +T + ++  Y  M +F N   AR +F+++   N V W+ ++ AYS  +D 
Sbjct: 34  LLKKGTIRHKLTVSRLLTTYASM-EFSNLTYARMVFDRISSPNTVMWNTMIRAYSNSNDP 92

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           +E L L+ QM    +  N      +L AC+ L A+ +   +H    +      V    ++
Sbjct: 93  EEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVYATNSL 152

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           + +Y+  G + SA  +F+ + ++D  +WN MI G    G+ + + ++F  M +       
Sbjct: 153 LRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWT 212

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           +  V  + T  H    ++ L L + M  V G++P     +C +   A  G +E+  K+I 
Sbjct: 213 SMIVGFVRTGMH----KEALCLLQQM-LVAGIKPDKITLSCSLSACAGLGALEQG-KWIH 266

Query: 325 EKMG 328
             +G
Sbjct: 267 TYIG 270


>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 173/424 (40%), Positives = 259/424 (61%), Gaps = 3/424 (0%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML+ G  P+NYT P ++KAC  L    + G   H   VK GF  D FV ++L+  YS
Sbjct: 93  YSQMLENGLYPDNYTLPYVLKACAGLQSC-HLGESAHGQSVKLGFWFDIFVGNTLIAMYS 151

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +  AR +FD+ P    V+WT M+ GY K+GD E AR LF++ P ++   W +I++ 
Sbjct: 152 SFGNVRAARCIFDEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISG 211

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y + + FKE L +FR MQ  G++P+E+ LVS+L ACAHLGA+  G+WVH Y  +     +
Sbjct: 212 YVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLS 271

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V L+T ++DMY+KCG +  A  +F+G+S +D   WNAMISG+AMNGD   +L LF  M K
Sbjct: 272 VRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEK 331

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G +P + TF+A+ T C+++ M  + + L  +M  VY +EP+ EHY C+VDLL RAG+++
Sbjct: 332 AGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLK 391

Query: 318 EAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           EA++ I +        +  + W ALLSAC  +G+ EV     ++L  +       +VL  
Sbjct: 392 EAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRLFHLE-HHSGAYVLLS 450

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           N+Y  AG      ++RK++   G+ K PGCS +++NGVV EF+AG+  H Q  E++RV+ 
Sbjct: 451 NLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSVKINGVVHEFIAGEETHLQMEEVHRVLE 510

Query: 437 SFLK 440
              K
Sbjct: 511 KMNK 514



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 137/344 (39%), Gaps = 65/344 (18%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA V+  G G D F +S LL F S  H +                            G  
Sbjct: 25  HAQVLTCGLGTDSFALSRLLAFCS--HPL---------------------------HGSL 55

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
            +A +LF+++        + ++ A+         + ++ QM E G+ P+   L  VL AC
Sbjct: 56  PHAWKLFQQIQHPTICICNTMIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKAC 115

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A L +   G   H  + +     ++ +   ++ MYS  G+V +A  +F+ +    A +W 
Sbjct: 116 AGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWT 175

Query: 234 AMISGVAMNGDA-------------------------------KKSLELFDRMVKSGTQP 262
            MISG A  GD                                K+ L++F  M  +G +P
Sbjct: 176 VMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQSTGLEP 235

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E   V++L  C H   +  G+ +   +  + G    +     ++D+ A+ G ++ A+K 
Sbjct: 236 DEAILVSILCACAHLGAMEIGVWVHRYLDQL-GHPLSVRLSTGLIDMYAKCGSLDIAKKL 294

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +    G+   D   W A++S   + G  +   R++ ++ + G+
Sbjct: 295 FD----GMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGV 334



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 38/261 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q N  K  +  +  M   G EP+      ++ AC  LG +E  G++VH ++ + 
Sbjct: 208 IISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAME-IGVWVHRYLDQL 266

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + + L++ Y+    +  A+ LFD    RD + W  M+ G    GD +NA    
Sbjct: 267 GHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNA---- 322

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L LF +M++ G+KP++   +++ TAC++ G   
Sbjct: 323 ---------------------------LRLFSEMEKAGVKPDDITFIAIFTACSYSGMAH 355

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-----KDAGAWNA 234
           + +  ++S    Y++E        +VD+  + G +  A  +   + N     + A AW A
Sbjct: 356 EAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRA 415

Query: 235 MISGVAMNGDAKKSLELFDRM 255
           ++S    +G  + + +   R+
Sbjct: 416 LLSACCSHGQTEVAEDAAQRL 436


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/434 (41%), Positives = 263/434 (60%), Gaps = 7/434 (1%)

Query: 2   IRGYMQANFPKL---SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           IRG+ +A  P     SV  ++ M  +   PNN+TF  L + C       + G   H  V+
Sbjct: 61  IRGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAF-DLGRQFHGMVI 119

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K  F  D FV +S++ FYS+  ++  AR +FD+S + DVV+W +M+DG  + G+   A  
Sbjct: 120 KNSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALS 179

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF KM ERN +SW+ +++ Y++    KE L+LFR+MQ +  +PN + LVSVL+AC+ LGA
Sbjct: 180 LFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPNSAILVSVLSACSQLGA 239

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G WVH Y  +  +  + IL+ A++DMY+KCG +  A+  F     +D  A+ A ISG
Sbjct: 240 LDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISG 299

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AMNG ++++L+LF++M   G  P   +++AVL  C+HA  V  G + F +MS V+G+ P
Sbjct: 300 LAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRP 359

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +L+HYAC+VDLL RAG++EEAEKF+          D  +WGALL ACR+YG  E+G RV 
Sbjct: 360 ELDHYACMVDLLGRAGLLEEAEKFVASMP---IKPDNVIWGALLGACRVYGNAEMGQRVG 416

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
             L E        ++L  NIY E+    +A +VRK +    + + PGCS+IEV G V EF
Sbjct: 417 SLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEF 476

Query: 419 LAGDNRHAQAGEIY 432
            +GD  H +  EIY
Sbjct: 477 FSGDRSHEKTEEIY 490



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 38/262 (14%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY Q   PK  L++F  + MLD   EPN+     ++ AC  LG L++ G +VH ++ 
Sbjct: 195 MISGYAQNGQPKEALALFREMQMLDQ--EPNSAILVSVLSACSQLGALDH-GCWVHCYIG 251

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K     D  + ++L++ Y+    +  A   F  S  RDV  +T  + G    G  E A +
Sbjct: 252 KKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQ 311

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE                               QM+  G+ P+    ++VL AC+H G 
Sbjct: 312 LFE-------------------------------QMKGEGISPDGVSYIAVLCACSHAGW 340

Query: 179 ITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           + +G  +  S +  + +   +     +VD+  + G +  A      +  K D   W A++
Sbjct: 341 VEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALL 400

Query: 237 SGVAMNGDAKKSLELFDRMVKS 258
               + G+A+    +   +V+S
Sbjct: 401 GACRVYGNAEMGQRVGSLLVES 422


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 171/442 (38%), Positives = 268/442 (60%), Gaps = 5/442 (1%)

Query: 1   MIRGYMQANF--PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY++       ++VFC +   + G  P+  T    + AC  L  LE  G  +H H V
Sbjct: 209 MISGYVKCRRFEDAINVFCRMQE-ESGLMPDEATVVSTLSACTALKRLE-LGKKIH-HYV 265

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           +      P + ++LL+ Y     +  ARA+F++ P ++V+ WTTMV GY   G+ E ARE
Sbjct: 266 RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARE 325

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE  P R+ V W+A++  Y + + F E ++LFR+MQ   +KP++  +VS+LT CA  GA
Sbjct: 326 LFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGA 385

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           I QG W+H +     +  + ++ TA+++MY+KCG +  AL +F G+  KD  +W ++I G
Sbjct: 386 IEQGKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICG 445

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AMNG   K+LELF +M ++G +P + TF+ VL+ C+H  +V +G   F +M   Y ++P
Sbjct: 446 LAMNGKTSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKP 505

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           ++EHY C+VDLL RAG++ EAE+ I++           ++G+LLSACRIYG +E+G RV 
Sbjct: 506 KVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVA 565

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           ++L +   +D S H L  NIY  A    +  KVR+ + + G+KK PGCS IEV+ ++ EF
Sbjct: 566 KQLVKFESSDSSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEF 625

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
            +G   H +  EIY +++   K
Sbjct: 626 FSGHPSHPEMREIYYMLNIMAK 647



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 174/404 (43%), Gaps = 82/404 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ + +    K ++  +  + + G  P+N+T+P + KA   LG +      +   V K 
Sbjct: 108 IIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSK-AEKLRGLVTKT 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL++ Y+ +      + LFD+ PDRDV++W  M+ GY K   FE+A  +F
Sbjct: 167 GLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVF 226

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M E                              E G+ P+E+ +VS L+AC  L  + 
Sbjct: 227 CRMQE------------------------------ESGLMPDEATVVSTLSACTALKRLE 256

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y  R +++   I+  A++DMY KCG +  A +VFE + +K+   W  M+SG A
Sbjct: 257 LGKKIHHYV-RDNVKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYA 315

Query: 241 MNGDAKKSLELFD-------------------------------RMVKSGTQPTETTFVA 269
             G+ +++ ELF+                                M     +P +   V+
Sbjct: 316 NCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVS 375

Query: 270 VLTTCTHAKMVRDGLNLFE-------NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           +LT C     +  G  + E        + AV G          ++++ A+ G +E+A   
Sbjct: 376 LLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVG--------TALIEMYAKCGFIEKA--- 424

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             E   GL   D   W +++    + GK      ++ K+ + G+
Sbjct: 425 -LEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGV 467



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/289 (21%), Positives = 131/289 (45%), Gaps = 13/289 (4%)

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV----DGYGKMGDFENARELFEKMP 124
           +S L    S+ H       +F     +D+V+   ++    D +   G+   A ++F+ + 
Sbjct: 41  ISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAFCTDPFN--GNLNYAEKMFKYIR 98

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
               + ++ I+ A+++  ++K  L LF +++E G+ P+      V  A  +LG +++   
Sbjct: 99  YPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEK 158

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +     +  LE +  +  +++DMY++         +F+ + ++D  +WN MISG      
Sbjct: 159 LRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRR 218

Query: 245 AKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
            + ++ +F RM  +SG  P E T V+ L+ CT  K +  G  +   +       P + + 
Sbjct: 219 FEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGN- 277

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             ++D+  + G +  A    EE    +   +   W  ++S     G++E
Sbjct: 278 -ALLDMYCKCGCLSIARAVFEE----MPSKNVICWTTMVSGYANCGELE 321


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  346 bits (887), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 291/507 (57%), Gaps = 73/507 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR    +  P  ++  Y  ML  G +P++ T+P +IKAC     +  FG+ VH HVVK 
Sbjct: 166 LIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACN-ESSVTWFGLLVHTHVVKS 224

Query: 61  GFGEDPFVVSSLLEFYS------------------------------LVH-KMGTARALF 89
           GF  D ++VSSL+  Y+                              + H +MG AR +F
Sbjct: 225 GFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVF 284

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN---------------------- 127
           D+   RDV++W TM++GY  +G  + A+ LF++MPERN                      
Sbjct: 285 DRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFG 344

Query: 128 ---------AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
                     VSW++++A Y++     E L+LF QM+ VG+KP E+ +VS+L+ACAHLGA
Sbjct: 345 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 404

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + +GL +H+Y     +E N I+ TA+VDMY+KCG +  A  VF  + +KD  AWN +I+G
Sbjct: 405 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 464

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A++G+ K++ +LF  M ++G +P + TFVA+L+ C+HA MV +G  L + MS+ YG+EP
Sbjct: 465 MAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEP 524

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRV 357
           ++EHY CV+DLLARAG +EEA + I    G +    + +  GALL  CRI+G  E+G  V
Sbjct: 525 KVEHYGCVIDLLARAGFLEEAMELI----GTMPMEPNPSALGALLGGCRIHGNFELGEMV 580

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            ++L  +       ++L  NIY  A  WD +A KVR L+   G+ K PG SVIE+ G+V 
Sbjct: 581 GKRLINLQPCHSGRYILLSNIYAAAKKWD-DARKVRNLMKVNGISKVPGVSVIELKGMVH 639

Query: 417 EFLAGDNRHAQAGEIYRV---IHSFLK 440
            F+AGD  H ++ +IY     IH+ LK
Sbjct: 640 RFVAGDWSHPESNKIYEKLNEIHTRLK 666



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A+ +F  +       +++++ A S      E L L+  M + G+KP+      V+ AC  
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
                 GL VH++  +   E +  + ++++ +Y+    + +A  +F   S +D  +WNAM
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267

Query: 236 ISGVAMNGDAKKSLELFDRMV 256
           I G   + +   +  +FDRMV
Sbjct: 268 IDGYVKHVEMGHARMVFDRMV 288



 Score = 42.0 bits (97), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 106/260 (40%), Gaps = 36/260 (13%)

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-NVIL 200
           SD K   S+ R    +   P+   ++S+   C  L  + Q   VH+    +H     +  
Sbjct: 75  SDAKLQSSMSRTPNPLTNPPSNPQILSLFNPCKTLRHLKQ---VHAQIITHHNSPFQLSA 131

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             ++  +      +  A ++F  + N     +N++I  ++ +    ++L L+  M++SG 
Sbjct: 132 LASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGL 191

Query: 261 QPTETTFVAVLTTCT-----------HAKMVRDG-----------LNLFENMSAVYGVEP 298
           +P   T+  V+  C            H  +V+ G           ++L+ N   + G   
Sbjct: 192 KPDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDL-GAAK 250

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGG-------LGGGDANVWGALLSACRIYGKI 351
           QL +     D+++   M++   K +E  MG        +   D   W  +++   I GKI
Sbjct: 251 QLFNLCSARDVVSWNAMIDGYVKHVE--MGHARMVFDRMVCRDVISWNTMINGYAIVGKI 308

Query: 352 EVGNRVWRKLAEMGITDFST 371
           +   R++ ++ E  +  +++
Sbjct: 309 DEAKRLFDEMPERNLVSWNS 328


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/439 (39%), Positives = 275/439 (62%), Gaps = 4/439 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+  +  P  +   Y+     G  P+N TFP L+K+C  L  + + G   H H++K 
Sbjct: 90  MIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCI-SMGSQAHGHIIKH 148

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF +D +V +SL+  Y+       A  +F +    DVV+WT+M+ G+ K GD E+AR+LF
Sbjct: 149 GFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLF 208

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPE+N V+WS +++ Y++ + F + + LF+ +Q  G++ NE+ +VSV+++CAHLGA+ 
Sbjct: 209 DQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALE 268

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H Y  +  +  N+IL TA+VDMY++CG +  A+ VFE +  +D  +W A+I+G+A
Sbjct: 269 LGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLA 328

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G +++SL+ F  MV++G  P + TF AVL+ C+H  +V  G  +FE+M   + VEP+L
Sbjct: 329 MHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRL 388

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG +EEAE+F+   +      +A VWGALL ACRI+   E+G RV + 
Sbjct: 389 EHYGCMVDLLGRAGKLEEAERFV---LKMPVKPNAPVWGALLGACRIHKNAEIGERVGKI 445

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L ++       +VL  NIY  A    +  ++R+++   G+KK PG S+IE++G V +F  
Sbjct: 446 LIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTI 505

Query: 421 GDNRHAQAGEIYRVIHSFL 439
           GD+ H +  +I R+    L
Sbjct: 506 GDSSHPEMDKIERMWEEIL 524



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/295 (21%), Positives = 123/295 (41%), Gaps = 36/295 (12%)

Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
           VD        + A  +F ++   N   ++A++  +S   +  +    + Q Q  G+ P+ 
Sbjct: 60  VDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDN 119

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
                ++ +C  L  I+ G   H +  ++  EK+V +  ++V MY+  G   +A  +F+ 
Sbjct: 120 LTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQR 179

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-------------------------- 257
           +   D  +W +MI G    GD + + +LFD+M +                          
Sbjct: 180 MYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELF 239

Query: 258 -----SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
                 G +  ET  V+V+++C H   +  G    + +    G+   L     +VD+ AR
Sbjct: 240 KVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYV-VKNGMTLNLILGTALVDMYAR 298

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
            G +++A    E+    L   D   W AL++   ++G  E   + +  + E G+T
Sbjct: 299 CGSIDKAVWVFED----LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLT 349


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 175/434 (40%), Positives = 271/434 (62%), Gaps = 7/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y  +  P  +V  Y +M +     P+ +TFP L+KAC  + P    G  +H+HV K
Sbjct: 106 LIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEI-PSLRLGEAIHSHVFK 164

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G+  +  V + L++ Y+    + +A  +FD++P+ D  +W  M+ GY K G F++AR +
Sbjct: 165 LGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRM 224

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE MP+R+ VSWS ++  Y + S FKE L LF+ M    ++PNES LV+ L+ACAHLGA+
Sbjct: 225 FEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAM 284

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+  Y +R ++   V L TA++DMYSKCG V  AL VF  +  K+  AW+AMI+G+
Sbjct: 285 EQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGL 344

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A+NG  K +L LF +M   G +P E TF+ +L  C+H+K+V +G + F +M+++YG++P 
Sbjct: 345 AINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPN 404

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
             H+ C+VDL  RAGM+++A+  I+         ++ +WGALL+ACRI+G  E+G +V +
Sbjct: 405 AHHHCCMVDLYGRAGMLDQAQTVIKSMP---FKPNSAIWGALLNACRIHGDTELGEQVGK 461

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L E+       +VL  NIY   G WD  A ++R+++ E  + K PGCS I++   + EF
Sbjct: 462 RLLELDPNHGGRYVLLSNIYAACGRWDRVA-ELRRMMRERQVSKTPGCSFIDLGDTIHEF 520

Query: 419 LAGDNRHAQAGEIY 432
           +AGD+ H Q   IY
Sbjct: 521 VAGDSSHPQLEMIY 534


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 177/438 (40%), Positives = 264/438 (60%), Gaps = 4/438 (0%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IRG+  +  P  S   Y+     G  P+N T+P L+KAC   G L+  G+  H  +++ G
Sbjct: 85  IRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLD-MGIQAHGQIIRHG 143

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  D +V +SL+  YS +  + +A  +F +    DVV+WT+MV GY K GD  +AR+LF+
Sbjct: 144 FDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFD 203

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           KMPE+N V+WS +++ Y++ S F + + L+  +Q  G+  NE+ +VSV+ +CAHLGA+  
Sbjct: 204 KMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALEL 263

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G   H Y  R  +  N+IL TA+VDMY++CG +  A+ VF+ +  +DA +W  +I+G AM
Sbjct: 264 GERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAM 323

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G A+K+LE F RM K+G  P E TF AVL+ C+H  +V  GL LFE+M   Y +EP+LE
Sbjct: 324 HGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLE 383

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+VDLL RAG + EAEKF+ E        +A +WGALL ACRI+   E+  R  + L
Sbjct: 384 HYGCMVDLLGRAGKLAEAEKFVNEMP---MKPNAPIWGALLGACRIHKNSEIAERAGKTL 440

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            E+       +VL  NIY           +R+++ E G+ K PG ++ E++G V +F  G
Sbjct: 441 IELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIG 500

Query: 422 DNRHAQAGEIYRVIHSFL 439
           D  H +  +I R+    L
Sbjct: 501 DKTHPEIQQIERMWEEIL 518



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 74/367 (20%), Positives = 145/367 (39%), Gaps = 79/367 (21%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
            +++C  L  L+     +HAH+++     D F  S L+                  S ++
Sbjct: 21  FLESCTTLSHLK----IIHAHLIRAHTIFDVFAASCLISI----------------SINK 60

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           +++ +               A ++F ++   N   +++ +  +S   D  +    + Q +
Sbjct: 61  NLLDY---------------AAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSK 105

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G+ P+      ++ AC   G++  G+  H    R+  + +V +  ++V MYS  G + 
Sbjct: 106 RNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIK 165

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS----------------- 258
           SA  VF  IS  D  +W +M++G   +GD   + +LFD+M +                  
Sbjct: 166 SASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSF 225

Query: 259 --------------GTQPTETTFVAVLTTCTHAKMVRDGLN----LFENMSAVYGVEPQL 300
                         G    ET  V+V+ +C H   +  G      +  N   V      L
Sbjct: 226 FDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTV-----NL 280

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                +VD+ AR G +++A    ++    L G DA  W  L++   ++G  E     + +
Sbjct: 281 ILGTALVDMYARCGSIDKAIWVFDQ----LPGRDALSWTTLIAGFAMHGYAEKALEYFSR 336

Query: 361 LAEMGIT 367
           + + G+T
Sbjct: 337 MEKAGLT 343



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 30/221 (13%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           +S L +C  L  +     +H++  R H   +V  A+ ++ +      +  A  VF  I N
Sbjct: 19  LSFLESCTTLSHLK---IIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT----------- 275
            +   +N+ I G + + D  KS   + +  ++G  P   T+  ++  CT           
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           H +++R G +     S VY     +  Y+ + D+        ++  ++  ++  L   D 
Sbjct: 136 HGQIIRHGFD-----SDVYVQNSLVTMYSTLGDI--------KSASYVFRRISCL---DV 179

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             W ++++     G +    +++ K+ E  +  +S  +  Y
Sbjct: 180 VSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGY 220


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  344 bits (882), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 170/441 (38%), Positives = 264/441 (59%), Gaps = 3/441 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I GY++    + +V  +  M       PN  T    + AC+ L  LE  G  +H +V +
Sbjct: 204 LISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLE-LGKEIHRYV-R 261

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              G    + ++L++ Y     +  AR +F+  P + V+ WT+MV GY   G  + AREL
Sbjct: 262 EQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEAREL 321

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+ P R+ V W+A++  Y + + F + ++LFR+MQ   + P+   LV++LT CA LG +
Sbjct: 322 FERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTL 381

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H Y     +  + ++ TA+++MY+KCG +  +L +F G+  KD  +W ++I G+
Sbjct: 382 EQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGL 441

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG   K+LELF  MV++G +P + TF+ VL+ C+H  +V +G   F +M+AVY +EP+
Sbjct: 442 AMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPK 501

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C++DLL RAG ++EAE+ IE+           ++GALLSACR +G +E+G RV +
Sbjct: 502 LEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAK 561

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L  +   D S H L  NIY  A    +  KVR+ + + G+KK PGCS +EVNG+V EFL
Sbjct: 562 RLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFL 621

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
            GD  H +  EIY ++ S  K
Sbjct: 622 VGDASHPEMREIYSMLDSIAK 642



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 82/404 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ + +    + +V  +  + + G  P+N+T+P + KA   LG +   G  V+  VVK 
Sbjct: 103 VIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVRE-GEKVYGFVVKS 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL++ Y+ V ++   R +F++ P RDVV+W  ++ GY K   +E+A ++F
Sbjct: 162 GLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVF 221

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M                               Q+  ++PNE+ +VS L+AC  L  + 
Sbjct: 222 RRM------------------------------QQQSSLRPNEATVVSTLSACIALKMLE 251

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y  R  L   + +  A+VDMY KCGH+  A  +F  +  K    W +M+SG  
Sbjct: 252 LGKEIHRYV-REQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYV 310

Query: 241 MNGDAKKSLELFDR-----------MVKSGTQ--------------------PTETTFVA 269
             G   ++ ELF+R           M+    Q                    P   T VA
Sbjct: 311 NCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVA 370

Query: 270 VLTTCTHAKMVRDGL----NLFEN---MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           +LT C     +  G      + EN   + AV G          ++++ A+ G +E++   
Sbjct: 371 LLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVG--------TALIEMYAKCGFIEKS--- 419

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             E   GL   D   W +++    + GK      ++ ++ + G+
Sbjct: 420 -LEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGV 462



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 108/217 (49%), Gaps = 3/217 (1%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +G+   A  +F  +       ++ ++ A+++   F++ + LFRQ++E G+ P+      V
Sbjct: 79  IGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFV 138

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
             A   LG + +G  V+ +  +  LE +  +  +++DMY++ G V +   VFE +  +D 
Sbjct: 139 FKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDV 198

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
            +WN +ISG       + ++++F RM  +S  +P E T V+ L+ C   KM+  G  +  
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHR 258

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            +    G   ++ +   +VD+  + G +  A +   +
Sbjct: 259 YVREQLGFTIKIGN--ALVDMYCKCGHLSIAREIFND 293


>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
          Length = 499

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/435 (41%), Positives = 275/435 (63%), Gaps = 11/435 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M R Y  +  P  ++  +  M   G  P+ YTFP L+KAC  L  L   G  +H   +KF
Sbjct: 58  MFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLK-GQELHCQALKF 116

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G   FV +SL+  Y    +M +AR +FD    RD+ +WTT++  Y      E AR++F
Sbjct: 117 GLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVF 176

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPER+ VS+SA++AAY R + F+E L LFR++  V ++P++S ++SVL ACA+LGA+ 
Sbjct: 177 DEMPERSVVSYSAMLAAYVRGNRFREALELFRELFSVKIEPSDSCVMSVLCACANLGALD 236

Query: 181 QGLWVHSY---AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            G WV+S+   +K  +++  +  ATA++DM+ KCG +  AL VFEG   K  G W AM+S
Sbjct: 237 VGRWVYSFVCHSKGDYVDSRI--ATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLS 294

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+AM+G  ++ +E F++MV SG +P E TFVA+L+ C+H+ +V +GL  F+ M + +GVE
Sbjct: 295 GLAMHGLGEQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVE 354

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P +EH+ CVVDLL RAG++++A + I E        +A +WGALL+ACR+Y  +EVG   
Sbjct: 355 PTVEHFGCVVDLLGRAGLIDQAMQLISEMP---FEPNAAIWGALLNACRVYKNVEVGELA 411

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L +    + + ++   ++Y+EAG WD E  KV+  + E G +K PGCS+IEV G+  
Sbjct: 412 AQWLIKDEPWNGALYMTLLSLYREAGRWD-EVEKVKLKMKEVGCRKGPGCSLIEVGGICY 470

Query: 417 EFLAGDNRHAQAGEI 431
           EF+ GD  H  A EI
Sbjct: 471 EFVVGDKSHPCAVEI 485



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 8/199 (4%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
             +AR LF+ +   +   ++ +   Y+        L L R M   G  P+      +L A
Sbjct: 37  LHHARLLFDAVYHPSTYLYNTMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKA 96

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+ L  + +G  +H  A ++ L  +V +  +++ +Y     + SA  VF+G+  +D  +W
Sbjct: 97  CSALAHLLKGQELHCQALKFGLGGHVFVENSLIHLYGSNSRMDSARRVFDGMGYRDIASW 156

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
             +++  A +   + + ++FD M     + +  ++ A+L         R+ L LF  + +
Sbjct: 157 TTLLACYANSCSVEAARKVFDEM----PERSVVSYSAMLAAYVRGNRFREALELFRELFS 212

Query: 293 VYGVEPQLEHYACVVDLLA 311
           V  +EP     +CV+ +L 
Sbjct: 213 V-KIEPS---DSCVMSVLC 227



 Score = 42.0 bits (97), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 20/212 (9%)

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           AHL  IT GL    + +  HL K + L T+          +H A  +F+ + +     +N
Sbjct: 9   AHL--ITSGL----HQQENHLRKLITLYTSSSSS------LHHARLLFDAVYHPSTYLYN 56

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            M    A +     +L L   M + G  P   TF  +L  C+    +  G  L    +  
Sbjct: 57  TMFRVYAASPTPLHALLLHRHMFRHGPPPDTYTFPFLLKACSALAHLLKGQEL-HCQALK 115

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+   +     ++ L      ++ A +  +    G+G  D   W  LL+       +E 
Sbjct: 116 FGLGGHVFVENSLIHLYGSNSRMDSARRVFD----GMGYRDIASWTTLLACYANSCSVEA 171

Query: 354 GNRVWRKLAEMGITDFSTHVLSY---NIYKEA 382
             +V+ ++ E  +  +S  + +Y   N ++EA
Sbjct: 172 ARKVFDEMPERSVVSYSAMLAAYVRGNRFREA 203


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 172/437 (39%), Positives = 265/437 (60%), Gaps = 6/437 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +IRG+ Q++ P  ++  ++DM+      +P   T+P + KA   LG L + G  +H  V+
Sbjct: 66  IIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLG-LAHEGAQLHGRVI 124

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D F+ +++L  Y     +G A+ +FD +   DVVTW TM+ G  K G+ + +R 
Sbjct: 125 KLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRR 184

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+KM  RN VSW+++++ Y R   F E + LF +MQE G+KP+E  +VS+L ACA LGA
Sbjct: 185 LFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGA 244

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W+H Y  + +   N I+ TA++DMYSKCG +  AL VF+    K    WN++I G
Sbjct: 245 LRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILG 304

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AM+G   +++ LF ++  S  +P   +F+ VLT C HA MV    + F  MS  Y +EP
Sbjct: 305 LAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEP 364

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            ++HY+C+VD+L RAG++EEAE+ I+         DA +WG+LLS+CR YG IE+  +  
Sbjct: 365 SIKHYSCMVDVLGRAGLLEEAEELIKSMP---VNPDAIIWGSLLSSCREYGNIEMAKQAA 421

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +++ E+   + S+ +L  N+Y       EA + R  + E  M K+PGCS+IEVNG V EF
Sbjct: 422 KRVNELDPNESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEF 481

Query: 419 LAGDNRHAQAGEIYRVI 435
           +AG   H ++ +IY  +
Sbjct: 482 VAGGRLHPRSKDIYHAL 498



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/380 (22%), Positives = 148/380 (38%), Gaps = 82/380 (21%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L K C  +  L+     +HA ++K G  +D    S +L F +              SP  
Sbjct: 2   LDKNCTSMKDLQK----IHAQLIKTGLAKDTIAASRVLAFCT--------------SP-- 41

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM- 154
                          GD   A  +F ++   N   W+ I+  +S+ S     +SLF  M 
Sbjct: 42  --------------AGDINYAYLVFTQIRNPNLFVWNTIIRGFSQSSTPHNAISLFIDMM 87

Query: 155 -QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
                 +P      SV  A A LG   +G  +H    +  LE +  +   +++MY  CG 
Sbjct: 88  FTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGF 147

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS------------------------- 248
           +  A  +F+G +  D   WN MI G+A  G+  KS                         
Sbjct: 148 LGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRK 207

Query: 249 ------LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL----NLFENMSAVYGVEP 298
                 +ELF RM + G +P+E T V++L  C     +R G      + +N  A+  +  
Sbjct: 208 GRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIV- 266

Query: 299 QLEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWGALLS-----ACRIYGKIE 352
                  ++D+ ++ G +++A + F      GL   ++ + G  +S     A R++ K+E
Sbjct: 267 ----ITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLE 322

Query: 353 VGNRVWRKLAEMGITDFSTH 372
             N     ++ +G+     H
Sbjct: 323 SSNLKPDHVSFIGVLTACNH 342


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 173/434 (39%), Positives = 268/434 (61%), Gaps = 7/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G++Q   P+ ++  +  M      PN  T   ++ AC     LE FG +   ++ + 
Sbjct: 203 MISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLE-FGRWACDYIERN 261

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  + +++L+ Y     +  AR LFDK  ++D+V+WTTM+DGY K+GD++ AR +F
Sbjct: 262 GIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVF 321

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           + MP  +  +W+A++++Y +    KE L++FR++Q     KPNE  L S L ACA LGA+
Sbjct: 322 DVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAM 381

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H Y K+  ++ N  + T+++DMYSKCGH+  AL VF  +  +D   W+AMI+G+
Sbjct: 382 DLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGL 441

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G  + +++LF +M ++  +P   TF  +L  C+H+ +V +G   F  M  VYGV P 
Sbjct: 442 AMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPG 501

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HYAC+VD+L RAG +EEA + I EKM  +    A+VWGALL ACRIYG +E+      
Sbjct: 502 SKHYACMVDILGRAGCLEEAVELI-EKMPIVPS--ASVWGALLGACRIYGNVELAEMACS 558

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L E    +   +VL  NIY +AG WD   +++R+ +  +G++K+PGCS IEVNG++ EF
Sbjct: 559 RLLETDSNNHGAYVLLSNIYAKAGKWDC-VSRLRQHMKVSGLEKEPGCSSIEVNGIIHEF 617

Query: 419 LAGDNRHAQAGEIY 432
           L GDN H  + EIY
Sbjct: 618 LVGDNSHPLSTEIY 631



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 178/401 (44%), Gaps = 74/401 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR +  +  P   +  ++ ML      PN+YTFP +IKA   +  L   G  +H  V+K
Sbjct: 101 LIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLA-GQAIHGMVMK 159

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             FG D F+ +SL+ FYS                                +GD ++A  +
Sbjct: 160 ASFGSDLFISNSLIHFYS-------------------------------SLGDLDSAYLV 188

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F K+ E++ VSW+++++ + +    +E L LF++M+    +PN   +V VL+ACA    +
Sbjct: 189 FSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDL 248

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK------------ 227
             G W   Y +R  ++ N+IL+ A++DMY KCG +  A  +F+ +  K            
Sbjct: 249 EFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGY 308

Query: 228 -------------------DAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTF 267
                              D  AWNA+IS    NG  K++L +F  + +   T+P E T 
Sbjct: 309 AKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTL 368

Query: 268 VAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            + L  C     +  G  ++++       G++        ++D+ ++ G +E+A     E
Sbjct: 369 ASTLAACAQLGAMDLGGWIHVYIKKQ---GIKLNFHITTSLIDMYSKCGHLEKA----LE 421

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
               +   D  VW A+++   ++G       ++ K+ E  +
Sbjct: 422 VFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKV 462



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 141/356 (39%), Gaps = 51/356 (14%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH--KMGTAR 86
           N  T P LI  C     L+     +HAH+++ G   DP   + L    +L     +  A 
Sbjct: 29  NPSTVPILIDKCANKKHLKQ----LHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYAC 84

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD+ P  ++ TW T++  +                               S     + 
Sbjct: 85  KVFDQIPRPNLYTWNTLIRAFA------------------------------SSPKPIQG 114

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           +L   + + E    PN      V+ A   + ++  G  +H    +     ++ ++ +++ 
Sbjct: 115 LLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIH 174

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
            YS  G + SA  VF  I  KD  +WN+MISG    G  +++L+LF RM     +P   T
Sbjct: 175 FYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVT 234

Query: 267 FVAVLTTCTHAKMV-----RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            V VL+ C  AK +     R   +  E      G++  L     ++D+  + G +E+A +
Sbjct: 235 MVGVLSAC--AKRIDLEFGRWACDYIER----NGIDINLILSNAMLDMYVKCGSLEDARR 288

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
             ++    +   D   W  ++      G  +   RV+  +    IT ++  + SY 
Sbjct: 289 LFDK----MEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQ 340


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 172/434 (39%), Positives = 268/434 (61%), Gaps = 7/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  ++Q   P+ ++  + +M     +PN  T   ++ AC      E FG +VH+++ + 
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFE-FGRWVHSYIERN 266

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             GE   + +++L+ Y+    +  A+ LFDK P++D+V+WTTM+ GY K+G+++ A+ +F
Sbjct: 267 RIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIF 326

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           + MP ++  +W+A+++AY +    KE L LF ++Q     KP+E  LVS L+ACA LGA+
Sbjct: 327 DAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAM 386

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H Y K+  ++ N  L T+++DMY KCG +  AL VF  +  KD   W+AMI+G+
Sbjct: 387 DLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGL 446

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G  K ++ LF +M +   +P   TF  +L  C+H  +V +G   F  M  VYGV P 
Sbjct: 447 AMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPG 506

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HYAC+VD+L RAG++EEA + I EKM       A+VWGALL AC I+  + +  +   
Sbjct: 507 VKHYACMVDILGRAGLLEEAVELI-EKMPMAPA--ASVWGALLGACTIHENVVLAEQACS 563

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L E+   +   +VL  NIY +AG WD   + +RKL+ + G+KK+PGCS IEV+G+V EF
Sbjct: 564 QLIELEPGNHGAYVLLSNIYAKAGKWD-RVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEF 622

Query: 419 LAGDNRHAQAGEIY 432
           L GDN H  A +IY
Sbjct: 623 LVGDNSHPSAKKIY 636



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 182/410 (44%), Gaps = 98/410 (23%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y  ++ P  S+  +L ML    + P+ +TFP LIKA   L  L   G   H  V+K
Sbjct: 106 LIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT-GKAFHGMVIK 164

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              G D F+++SL+ FY+                               K G+      +
Sbjct: 165 VLLGSDVFILNSLIHFYA-------------------------------KCGELGLGYRV 193

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  +P R+ VSW++++ A+ +    +E L LF++M+   +KPN   +V VL+ACA     
Sbjct: 194 FVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDF 253

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH------------------------ 215
             G WVHSY +R  + +++ L+ A++DMY+KCG V                         
Sbjct: 254 EFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGY 313

Query: 216 -------SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTF 267
                  +A  +F+ + N+D  AWNA+IS     G  K++LELF  +  S T +P E T 
Sbjct: 314 AKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL 373

Query: 268 VAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
           V+ L+ C            H  + + G+ L  +++              ++D+  + G +
Sbjct: 374 VSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLT------------TSLIDMYCKCGDL 421

Query: 317 EEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
           ++A      +E K       D  VW A+++   ++G  +    ++ K+ E
Sbjct: 422 QKALMVFHSVERK-------DVFVWSAMIAGLAMHGHGKDAIALFSKMQE 464



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/326 (19%), Positives = 131/326 (40%), Gaps = 37/326 (11%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSL--VHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HA +++ G   DPF  S L+   +L     +  A+ +FD+ P  ++ TW T++  Y   
Sbjct: 54  IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASS 113

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
            +   +  +F +M  ++               DF                P++     ++
Sbjct: 114 SNPHQSLLIFLRMLHQS--------------PDF----------------PDKFTFPFLI 143

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            A + L  +  G   H    +  L  +V +  +++  Y+KCG +     VF  I  +D  
Sbjct: 144 KAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVV 203

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN+MI+     G  +++LELF  M     +P   T V VL+ C        G  +   +
Sbjct: 204 SWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI 263

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                +   L     ++D+  + G VE+A++  ++    +   D   W  +L      G+
Sbjct: 264 ER-NRIGESLTLSNAMLDMYTKCGSVEDAKRLFDK----MPEKDIVSWTTMLVGYAKIGE 318

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLSY 376
            +    ++  +    I  ++  + +Y
Sbjct: 319 YDAAQGIFDAMPNQDIAAWNALISAY 344


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 176/442 (39%), Positives = 259/442 (58%), Gaps = 10/442 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY   N P+ ++  Y  M+  G +P+ +TFP L K+C +L      G  +H H  K 
Sbjct: 49  IIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE----GKQLHCHSTKL 104

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D ++ ++L+  YS    + +AR +FDK  ++ VV+W TM+  Y +      A +LF
Sbjct: 105 GFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLF 164

Query: 121 EKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            +M    N   W+ ++  +   SD++E LSLF +MQ  G+K ++  + S+L AC HLGA+
Sbjct: 165 RRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGAL 224

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H Y ++  +E +V L TA+VDMY+KCG + SA+ VF+ +  KD   W A+I G+
Sbjct: 225 ELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGL 284

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM G   K+LELF  M  S  +P   TFV VL  C+HA +V +G+  F +M   YG++P 
Sbjct: 285 AMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPS 344

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VD+L RAG + EAE  I+         D  V   LLSACRI+G + V  R  +
Sbjct: 345 IEHYGCMVDMLGRAGRIAEAEDLIQNMP---MAPDYFVLVGLLSACRIHGNLVVAERAAQ 401

Query: 360 KLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L E+   +  T+VL  NIY     W+  A K+R+L+ E  +KK PGCS IEV GVV EF
Sbjct: 402 QLIELDPKNGGTYVLLSNIYSSMKNWE-AAKKMRELMVERNIKKPPGCSAIEVGGVVHEF 460

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
           + GD  H Q+ EIY  +   ++
Sbjct: 461 VKGDVSHPQSSEIYETLDDMMR 482


>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 500

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 179/435 (41%), Positives = 274/435 (62%), Gaps = 11/435 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M R Y  +  P  ++  +  ML  G  P+ YTFP L+KAC  L  L   G  +H   +KF
Sbjct: 59  MFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPK-GQELHCQALKF 117

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G   FV +SL+  Y     M +AR +FD    RD+ +WTT++  Y      + AR++F
Sbjct: 118 GLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVF 177

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPER+ +S+SA++AAY R + F+E L LFR++  V ++P++S ++SVL ACA+LGA+ 
Sbjct: 178 DEMPERSVISYSAMIAAYVRGNRFREALDLFRELFSVKIEPSDSCVMSVLCACANLGALD 237

Query: 181 QGLWVHSY---AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            G WV+SY   +K  +++  +  ATA++DM+ KCG +  AL VFEG   K  G W AM+S
Sbjct: 238 VGRWVYSYVCQSKGDYVDSRI--ATALIDMFFKCGSIEHALLVFEGAKEKHVGEWTAMLS 295

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+AM+G  ++ +E F++MV SG +P   TFVA+L+ C+H+ +V +GL  F+ M + +GVE
Sbjct: 296 GLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVE 355

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P +EH+ CVVDLL RAG++++A + I E        +A +WG+LL+ACR+Y  +E+G   
Sbjct: 356 PTVEHFGCVVDLLGRAGLIDQAMQLISEMP---FEPNAAIWGSLLNACRVYKNVEIGELA 412

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L +    + + ++   ++Y+EAG WD E  KV+  + E G +K PGCS+IEV G+  
Sbjct: 413 AQWLIKDEPWNGALYMTLLSLYREAGRWD-EVEKVKLKMKEVGCRKGPGCSLIEVGGICY 471

Query: 417 EFLAGDNRHAQAGEI 431
           EF+ GD  H  A EI
Sbjct: 472 EFVVGDKSHPCAVEI 486



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 8/199 (4%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
             +AR LF+ +   +   ++ +   Y+        L L R M   G  P+      +L A
Sbjct: 38  LHHARLLFDAIHHPSTYLYNTMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKA 97

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+ L  + +G  +H  A ++ L  +V +  +++ +Y     + SA  VF+G+  +D  +W
Sbjct: 98  CSALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSGMDSARRVFDGMGYRDIASW 157

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
             +++  A +   K + ++FD M     + +  ++ A++         R+ L+LF  + +
Sbjct: 158 TTLLACYANSCSVKAARKVFDEM----PERSVISYSAMIAAYVRGNRFREALDLFRELFS 213

Query: 293 VYGVEPQLEHYACVVDLLA 311
           V  +EP     +CV+ +L 
Sbjct: 214 V-KIEPS---DSCVMSVLC 228



 Score = 42.0 bits (97), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 19/212 (8%)

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           AHL  IT GL    + +  HL K + L T+          +H A  +F+ I +     +N
Sbjct: 9   AHL--ITSGL----HQQENHLRKLITLYTSSSSSS-----LHHARLLFDAIHHPSTYLYN 57

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            M    A +     +L L   M++ G  P   TF  +L  C+    +  G  L    +  
Sbjct: 58  TMFRVYAASPTPLHALLLHRHMLRHGPPPDTYTFPFLLKACSALAHLPKGQEL-HCQALK 116

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+   +     ++ L      ++ A +  +    G+G  D   W  LL+       ++ 
Sbjct: 117 FGLGGHVFVENSLIHLYGSNSGMDSARRVFD----GMGYRDIASWTTLLACYANSCSVKA 172

Query: 354 GNRVWRKLAEMGITDFSTHVLSY---NIYKEA 382
             +V+ ++ E  +  +S  + +Y   N ++EA
Sbjct: 173 ARKVFDEMPERSVISYSAMIAAYVRGNRFREA 204


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 175/436 (40%), Positives = 267/436 (61%), Gaps = 10/436 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+      + ++  Y  ML  G EPN +TF  ++K C    P+E  G  +H+  VK 
Sbjct: 99  IIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEP-GKALHSQAVKL 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V + LL+ Y+    + +A+ LFD  P++ +V+ T M+  Y K G+ + AR LF
Sbjct: 154 GFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLF 213

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M ER+ V W+ ++  Y++     E L LFR+M +   KPNE  ++SVL+AC  LGA+ 
Sbjct: 214 DGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALE 273

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHSY +   ++ NV + TA+VDMYSKCG +  A  VF+ I +KD  AWN+MI G A
Sbjct: 274 SGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA 333

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G ++++L+LF  M + G  PT  TF+ +L+ C H+  V +G ++F  M   YG+EP++
Sbjct: 334 MHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKI 393

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+V+LL RAG VE+A + ++         D  +WG LL ACR++GKI +G ++   
Sbjct: 394 EHYGCMVNLLGRAGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEKIVEL 450

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L +  + +  T++L  NIY   G WD  A ++R ++ ++G+KK+PGCS IEVN  V EFL
Sbjct: 451 LVDQNLANSGTYILLSNIYAAVGNWDGVA-RLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 509

Query: 420 AGDNRHAQAGEIYRVI 435
           AG   H +  EIY ++
Sbjct: 510 AGGLNHPKRKEIYMML 525



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 175/390 (44%), Gaps = 30/390 (7%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA + + G    P +   L   Y+ + ++  + ALF ++ +  V  WT ++ G+   G 
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108

Query: 113 FENARELFEKM----PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
            E A   + +M     E NA ++S+I+    ++   +   +L  Q  ++G   +      
Sbjct: 109 HEQALNFYAQMLTQGVEPNAFTFSSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTG 164

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +L   A  G +     +         EK+++  TA++  Y+K G + +A  +F+G+  +D
Sbjct: 165 LLDVYARGGDVVSAQQLFDTMP----EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERD 220

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL---N 285
              WN MI G   NG   ++L LF RM+K+  +P E T ++VL+ C     +  G    +
Sbjct: 221 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHS 280

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
             EN     G++  +     +VD+ ++ G +E+A    ++    +   D   W +++   
Sbjct: 281 YIEN----NGIQFNVHVGTALVDMYSKCGSLEDARLVFDK----IDDKDVVAWNSMIVGY 332

Query: 346 RIYGKIEVGNRVWRKLAEMGITDFS-THVLSYNIYKEAGWDMEANKV-RKLISETGMKKK 403
            ++G  +   ++++ +  MG+   + T +   +    +GW  E   +  K+  E G++ K
Sbjct: 333 AMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK 392

Query: 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
                IE  G +   L       QA E+ +
Sbjct: 393 -----IEHYGCMVNLLGRAGHVEQAYELVK 417


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 175/436 (40%), Positives = 266/436 (61%), Gaps = 10/436 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+      + ++  Y  ML  G EPN +TF  ++K C    P+E  G  +H+  VK 
Sbjct: 46  IIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC----PIEP-GKALHSQAVKL 100

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V + LL+ Y+    + +A+ LFD  P++ +V+ T M+  Y K G+ + AR LF
Sbjct: 101 GFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLF 160

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M ER+ V W+ ++  Y++     E L LFR+M +   KPNE  ++SVL+AC  LGA+ 
Sbjct: 161 DGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALE 220

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHSY +   ++ NV + TA+VDMYSKCG +  A  VF+ I +KD  AWN+MI G A
Sbjct: 221 SGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA 280

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M G ++++L+LF  M + G  PT  TF+ +L+ C H+  V +G ++F  M   YG+EP++
Sbjct: 281 MXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKI 340

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+V+LL RAG VE+A + ++         D  +WG LL ACR++GKI +G ++   
Sbjct: 341 EHYGCMVNLLGRAGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEKIVEL 397

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L +  + +  T++L  NIY   G WD  A ++R ++ ++G+KK+PGCS IEVN  V EFL
Sbjct: 398 LVDQNLANSGTYILLSNIYAAVGNWDGVA-RLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 456

Query: 420 AGDNRHAQAGEIYRVI 435
           AG   H +  EIY ++
Sbjct: 457 AGGLNHPKRKEIYMML 472



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 167/374 (44%), Gaps = 30/374 (8%)

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM----P 124
           +  L   Y+ + ++  + ALF ++ +  V  WT ++ G+   G  E A   + +M     
Sbjct: 12  LDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGV 71

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           E NA ++S+I+    ++   +   +L  Q  ++G   +      +L   A  G +     
Sbjct: 72  EPNAFTFSSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQ 127

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +         EK+++  TA++  Y+K G + +A  +F+G+  +D   WN MI G   NG 
Sbjct: 128 LFDTMP----EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGM 183

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL---NLFENMSAVYGVEPQLE 301
             ++L LF RM+K+  +P E T ++VL+ C     +  G    +  EN     G++  + 
Sbjct: 184 PNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIEN----NGIQFNVH 239

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
               +VD+ ++ G +E+A    ++    +   D   W +++    + G  +   ++++ +
Sbjct: 240 VGTALVDMYSKCGSLEDARLVFDK----IDDKDVVAWNSMIVGYAMXGFSQEALQLFKSM 295

Query: 362 AEMGITDFS-THVLSYNIYKEAGWDMEANKV-RKLISETGMKKKPGCSVIEVNGVVEEFL 419
             MG+   + T +   +    +GW  E   +  K+  E G++ K     IE  G +   L
Sbjct: 296 CRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK-----IEHYGCMVNLL 350

Query: 420 AGDNRHAQAGEIYR 433
                  QA E+ +
Sbjct: 351 GRAGHVEQAYELVK 364


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 169/424 (39%), Positives = 262/424 (61%), Gaps = 7/424 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  +  P+ ++  +  ML     P+ YTF   +K+C     +E  G  +H HV+K 
Sbjct: 79  IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEE-GRQIHGHVLKT 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA-REL 119
           G G+D F+ ++L+  Y+    +  AR L D+  +RDVV+W  ++  Y + G  E A R +
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRV 197

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F + P +N VSW+A++  YS    F EVL LF  MQ  G+KP+   LVSVL+ACAH+GA+
Sbjct: 198 FGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGAL 257

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           +QG WVH+Y  +  +  +  +ATA+VDMYSKCG +  AL VF     KD   WN++ISG+
Sbjct: 258 SQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGL 317

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           + +G  + +L++F  M+  G +P E TFV VL+ C+ A ++ +G  +F  M  V+G++P 
Sbjct: 318 STHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPT 377

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN-VWGALLSACRIYGKIEVGNRVW 358
           +EHY C+VDLL R G++EEAE+ +++    +   +A+ VW +LL ACR +G +E+  RV 
Sbjct: 378 IEHYGCMVDLLGRVGLLEEAEELVQK----MPQKEASVVWESLLGACRNHGNVELAERVA 433

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +KL E+   + S+ V   N+Y   G   +  +VR+ +   G++K PGCS+IEV+G V EF
Sbjct: 434 QKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEF 493

Query: 419 LAGD 422
           LAG+
Sbjct: 494 LAGE 497



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 138/307 (44%), Gaps = 18/307 (5%)

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             F E    +S L + ++ + K G   + F  S  R + + +T  + + +   +  A  +
Sbjct: 11  LSFAEMATSISELHQAHAHILKSGLIHSTFAAS--RLIASVST--NSHAQAIPY--AHSI 64

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F ++P  N+  W+ I+ AY+     +  L++F QM    + P++      L +C     +
Sbjct: 65  FSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGV 124

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            +G  +H +  +  L  ++ +   ++ +Y+ CG +  A  + + +  +D  +WNA++S  
Sbjct: 125 EEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAY 184

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTET--TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           A  G     +EL  R V  G  P +   ++ A++T  +HA    + L LFE+M    GV+
Sbjct: 185 AERG----LMELASRRV-FGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHA-GVK 238

Query: 298 PQLEHYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLSAC-RIYGKIEV 353
           P       V+   A  G + + E    +I++    + G  A     + S C  I   +EV
Sbjct: 239 PDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEV 298

Query: 354 GNRVWRK 360
            N   RK
Sbjct: 299 FNSCLRK 305



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 19/241 (7%)

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS---ALSVFEGISNKDAGAWNA 234
           +I++    H++  +  L  +   A+ ++   S   H  +   A S+F  I N ++  WN 
Sbjct: 19  SISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNT 78

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I   A +   + +L +F +M+ +   P + TF   L +C     V +G  +  ++    
Sbjct: 79  IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKT- 137

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+   L     ++ L A  G +E+A   ++  +      D   W ALLSA    G +E+ 
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARHLLDRML----ERDVVSWNALLSAYAERGLMELA 193

Query: 355 NRVWRKLAEMGITDFSTHVLSYNI----YKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           +R  R   E  + +    V+S+N     Y  AG   E   + + +   G+K    C+++ 
Sbjct: 194 SR--RVFGETPVKN----VVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPD-NCTLVS 246

Query: 411 V 411
           V
Sbjct: 247 V 247


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  337 bits (863), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 265/439 (60%), Gaps = 5/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG+ Q++ P  ++  ++DML +   +P+  T+P + KA   LG L ++G  +H  V+K
Sbjct: 95  IIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLG-LAHYGAQLHGRVIK 153

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   DPF+ ++++  Y+    +      F +  D D+V W +M+ G  K G+ + +R+L
Sbjct: 154 LGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKL 213

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP RN VSW+++++ Y R    +E L LF QMQE  +KP+E  +VS+L A A LGA+
Sbjct: 214 FDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGAL 273

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H Y ++ + E NVI+  +++DMY KCG +  A  VFE    K   +WN MI G+
Sbjct: 274 KQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGL 333

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG   ++++LF R+  S  +P + TFV VLT C ++ +V      F  MS  Y +EP 
Sbjct: 334 AMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPS 393

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY+C+VD L RAG++EEAE+ I          DA +W +LLSACR +G +E+  R  +
Sbjct: 394 IKHYSCMVDTLGRAGLLEEAEELIRNMP---VNPDAIIWSSLLSACRKHGNVELAKRAAK 450

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            + ++   D   +VL  NIY  +    EA + R  + E  ++K+PGCS+IEVNG + EF+
Sbjct: 451 HIVDLDGNDSCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFV 510

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           AG   H QA E+Y +++  
Sbjct: 511 AGGRLHPQAQEVYSLLNEL 529



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/358 (22%), Positives = 146/358 (40%), Gaps = 72/358 (20%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L K C  +  L+     +HAH++K G  + P  VS +L F +              SP  
Sbjct: 30  LEKHCTTMKDLQK----IHAHLLKTGLAKHPLAVSPVLAFCA-------------TSPG- 71

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
                          GD   A  +F ++   N  SW+ I+  +S+ S     +SLF  M 
Sbjct: 72  ---------------GDINYAYLVFTQIHSPNLFSWNTIIRGFSQSSTPHHAISLFIDML 116

Query: 156 EV-GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY------ 208
            V  ++P+     SV  A A LG    G  +H    +  L+ +  +   ++ MY      
Sbjct: 117 IVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFL 176

Query: 209 -------------------------SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
                                    +KCG V  +  +F+ +  ++  +WN+MISG   NG
Sbjct: 177 SEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNG 236

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
             +++L+LF +M +   +P+E T V++L        ++ G  + + +      E  +   
Sbjct: 237 RLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRK-NNFELNVIVT 295

Query: 304 ACVVDLLARAGMVEEAEKFIE-EKMGGLGGGDANVWGALLSAC-----RIYGKIEVGN 355
           A ++D+  + G + EA +  E   + GL   +  + G  ++ C     +++ ++E  N
Sbjct: 296 ASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSN 353


>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 166/420 (39%), Positives = 258/420 (61%), Gaps = 4/420 (0%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  ML  G  P+NYT P ++KAC  L    + G  VH +  K G   D FV +SL+  YS
Sbjct: 93  FTKMLHNGLGPDNYTIPYVLKACAALRDC-SLGKMVHGYSSKLGLVFDIFVGNSLMAMYS 151

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           +   +  AR +FD+ P    V+W+ M+ GY K+GD ++AR  F++ PE++   W A+++ 
Sbjct: 152 VCGDVIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISG 211

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y + S FKE L LFR +Q   + P+ES  VS+L+ACAHLGA+  G+W+H Y  R  +  +
Sbjct: 212 YVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLS 271

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + L+T+++DMY+KCG++  A  +F+ +  +D   WNAMISG+AM+GD   +L++F  M K
Sbjct: 272 IRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEK 331

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G +P + TF+AV T C+++ M  +GL L + MS++Y +EP+ EHY C+VDLL+RAG+  
Sbjct: 332 TGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFG 391

Query: 318 EAEKFIEEKMGGL--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           EA   I         G  +   W A LSAC  +G+ ++  R  ++L  +       +VL 
Sbjct: 392 EAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLAERAAKRLLRLE-NHSGVYVLL 450

Query: 376 YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            N+Y  +G   +A +VR ++   G+ K PGCS +E++GVV EF+AG+  H Q  EI+ V+
Sbjct: 451 SNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVEIDGVVSEFIAGEETHPQMEEIHSVL 510



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 135/344 (39%), Gaps = 65/344 (18%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA V   G   + F +S LL F S  ++                             G  
Sbjct: 25  HAQVFTTGLDTNTFALSRLLAFCSHPYQ-----------------------------GSL 55

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  +FE++        + I+  +    +F     +F +M   G+ P+   +  VL AC
Sbjct: 56  TYACRVFERIHHPTLCICNTIIKTFLVNGNFYGTFHVFTKMLHNGLGPDNYTIPYVLKAC 115

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN------- 226
           A L   + G  VH Y+ +  L  ++ +  +++ MYS CG V +A  VF+ +         
Sbjct: 116 AALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGDVIAARHVFDEMPRLSAVSWS 175

Query: 227 ------------------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
                                   KD G W AMISG   N   K+ L LF  +  +   P
Sbjct: 176 VMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLLQLTHVVP 235

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E+ FV++L+ C H   +  G+ +   ++    V   +     ++D+ A+ G +E A++ 
Sbjct: 236 DESIFVSILSACAHLGALDIGIWIHRYLNR-KTVSLSIRLSTSLLDMYAKCGNLELAKRL 294

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +     +   D   W A++S   ++G      +++ ++ + GI
Sbjct: 295 FDS----MPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGI 334


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 174/444 (39%), Positives = 272/444 (61%), Gaps = 13/444 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  ++Q+     +   Y  ML  G EPN +TF  ++K+C     LE+ G  +H   +K 
Sbjct: 116 IIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SLES-GKVLHCQAIKL 170

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G D +V + L++ Y+    +  AR LFDK P+R +V+ TTM+  Y KMG+ + AR LF
Sbjct: 171 GLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLF 230

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M ER+ V W+ ++  Y++     E L LFR+M      PNE  +++VL+AC  LGA+ 
Sbjct: 231 EGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALE 290

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+HSY +   ++ NV + TA++DMYSKCG +  A  VF+ I +KD  AWN+MI G A
Sbjct: 291 SGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYA 350

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G ++ +L+LF+ M ++G +PT+ TF+ +L+ C H  +V +G + F  M   YG+EP++
Sbjct: 351 MHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKI 410

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+V+LL RAG +EEA   ++         D  +WG LL  CR++  I++G  + + 
Sbjct: 411 EHYGCMVNLLGRAGHLEEAYGLVKNMT---IAADPVLWGTLLGCCRLHVNIKLGEEIAKF 467

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L +  + +  T+VL  N+Y   G W+  A K+R L+ E G++K+ GCS IEV+  V EF+
Sbjct: 468 LVDQKLANSGTYVLLSNMYAATGNWEGVA-KMRTLMKEHGIEKEHGCSSIEVDNKVHEFV 526

Query: 420 AGDNRHAQAGEIYRV---IHSFLK 440
           AG+ +H ++ EIY +   I+S+LK
Sbjct: 527 AGERKHPKSKEIYVMLNEINSWLK 550



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 38/289 (13%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y  +G  + +  +F    E N  S+SAI+ ++ +   F      + QM   G++PN    
Sbjct: 89  YAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTF 148

Query: 167 VSVLTACA-------HLGAITQGL---------WVHSYAKRYHL-----------EKNVI 199
            SVL +C+       H  AI  GL          V  YA+   +           E++++
Sbjct: 149 SSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLV 208

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
             T ++  YSK G +  A S+FEG+  +D   WN MI G A +G   +SL+LF RM+ + 
Sbjct: 209 SLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAK 268

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGL---NLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             P E T +AVL+ C     +  G    +  EN     G++  +     ++D+ ++ G +
Sbjct: 269 AIPNEVTVLAVLSACGQLGALESGRWIHSYIENK----GIQINVHVGTALIDMYSKCGSL 324

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           E+A    +     +   D   W +++    ++G  +   +++ ++ E G
Sbjct: 325 EDARLVFDR----IRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETG 369


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/438 (37%), Positives = 270/438 (61%), Gaps = 6/438 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I GY+++  P+ ++  +  +++ G    P+  T    +  C  +G LE  G  +H  V 
Sbjct: 193 LIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLE-LGKRLHEFVD 251

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
             G      +++++++ Y     +  A+++F++  ++ VV+WTTM+ G+ ++G  E+AR 
Sbjct: 252 SKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARM 311

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF++MPER+   W+A+MA Y +    KE ++LF +MQE  + PNE  +V++L+AC+ LGA
Sbjct: 312 LFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGA 371

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G+WVH Y  R+ L  +V L T++VDMY+KCG++  A+ +F+ I +K+A  W AMI G
Sbjct: 372 LEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICG 431

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G A +++E F RM+  G QP E TF+ VL+ C HA +V++G   F  M   Y +E 
Sbjct: 432 LANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLER 491

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +++HY+C++DLL RAG ++EAE+ +          DA VWGAL  ACR++G I +G +  
Sbjct: 492 KMKHYSCMIDLLGRAGHLDEAEQLVNTMP---MDPDAVVWGALFFACRMHGNITLGEKAA 548

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            KL E+  +D   +VL  N+Y EA    +A+KVR ++   G++K PGCS IE+NGVV EF
Sbjct: 549 MKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEF 608

Query: 419 LAGDNRHAQAGEIYRVIH 436
           +  D  H     IY  +H
Sbjct: 609 IVKDKSHLDTIAIYDCLH 626



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 167/371 (45%), Gaps = 66/371 (17%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            P++ TFP L+KAC  L     +G  V  HV K GF  D FVV++ + F+S+   M  AR
Sbjct: 118 RPDHLTFPFLLKACARLQ-YRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLAR 176

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD+SP RDVV+W T++ GY + G    A ELF ++                 + D K 
Sbjct: 177 RLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRL-----------------VEDGKA 219

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           V            +P+E  ++  ++ CA +G +  G  +H +     +   V L  AV+D
Sbjct: 220 V------------RPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMD 267

Query: 207 MYSKCGHVHSALSVFEGISNK-------------------------------DAGAWNAM 235
           MY KCG +  A SVFE I NK                               D   WNA+
Sbjct: 268 MYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNAL 327

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ++G   N   K+++ LF  M +S   P E T V +L+ C+    +  G+ +   +   + 
Sbjct: 328 MAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDR-HQ 386

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +   +     +VD+ A+ G +++A    +E    +   +A  W A++     +G  +   
Sbjct: 387 LYLSVALGTSLVDMYAKCGNIKKAICIFKE----IPDKNALTWTAMICGLANHGHADEAI 442

Query: 356 RVWRKLAEMGI 366
             ++++ ++G+
Sbjct: 443 EYFQRMIDLGL 453


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 180/434 (41%), Positives = 258/434 (59%), Gaps = 8/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIR + +++ P  S   Y  +L       P+NYTF  L++    L      G  VH   V
Sbjct: 80  MIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQL-LAHGTGSSVHGAAV 138

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K+GF  DP V S L+  Y+ +  +     +F    + D+V  T MV    KMGD   AR+
Sbjct: 139 KYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARK 198

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+KM  ++ ++W+A+++ Y +    +E LSLF  MQ  G+K NE  +VSVL+AC+HLGA
Sbjct: 199 LFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGA 258

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W H+Y +R  L   + L TA++DMY+KCG+++ A+ VF G+  K+   W++ I G
Sbjct: 259 LDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGG 318

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AMNG  +K LELF  M +   QP E TFV+VL  C+   +V +G   FE+MS VYG+EP
Sbjct: 319 LAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEP 378

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C+VDL  RAG ++EA  FI         G    WGALL+AC+IY  +E+G    
Sbjct: 379 RLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVG---AWGALLNACKIYRNMEMGELAS 435

Query: 359 RKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           RK+ E+   +   +VL  NIY ++  WD  +N VR+ ++  G++K+PGCSVIEV G V E
Sbjct: 436 RKIVELEAKNHGAYVLLSNIYADSKDWDRVSN-VRQTMNVKGVRKQPGCSVIEVGGEVHE 494

Query: 418 FLAGDNRHAQAGEI 431
           F  GD  H +  EI
Sbjct: 495 FFVGDKSHPRYAEI 508


>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
 gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Cucumis sativus]
          Length = 543

 Score =  335 bits (858), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 173/441 (39%), Positives = 274/441 (62%), Gaps = 14/441 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG+ Q++ P+++++ ++DML     EP   T+P + KA   LG L + G  +H  ++K
Sbjct: 94  VIRGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLG-LAHDGAQLHGRIIK 152

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   DPF+ +++L  Y+    +  AR +F++  + DVV+W +M+ G  K G+ + +R+L
Sbjct: 153 LGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRKL 212

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+KMP +N +SW++++  Y R   FKE L LF +MQE  ++P+E  +VS+L A A +GA+
Sbjct: 213 FDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGAL 272

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG+W+H Y K+ +L+ N I+ TA++DMY KCG + +AL VFE I  +   +WN+MI G+
Sbjct: 273 RQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGL 332

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A+NG  K+++ +F  +  S  +P   +F+AVLT C H  MV +G+  F  M   Y +EP 
Sbjct: 333 AVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGAMVDEGMEFFSRMKNTYRIEPS 392

Query: 300 LEHYACVVDLLARAGMVEEAEKFIE----EKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++HY  +VD+++RAG +EEAE+FI+    EK       DA +WG LLSACRIYG  E+  
Sbjct: 393 IKHYNLMVDMISRAGFLEEAEQFIKTMPIEK-------DAIIWGCLLSACRIYGNTEMAK 445

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           R   K+ E+   +   +VL  NI+      + A + R  +    ++K+PG S IEV+  V
Sbjct: 446 RAAEKVNELDPEETMGYVLMANIHAWGNNFVGAMEKRVAMRMKKVEKEPGGSFIEVDEEV 505

Query: 416 EEFLAGDNR-HAQAGEIYRVI 435
            EF+AG  R H +A EIY V+
Sbjct: 506 HEFIAGGGRLHRKAQEIYIVL 526



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 155/321 (48%), Gaps = 28/321 (8%)

Query: 38  KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF-YSLVHKMGTARALFDKSPDRD 96
           K C  +  L+ F    HAH++K G   + F  S +L F  S +  M  A  +F +  + +
Sbjct: 32  KYCTTMRDLQQF----HAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPN 87

Query: 97  VVTWTTMVDGYGKMGDFENARELFEKM-------PERNAVSWSAIMAAYSRISDFKEVLS 149
           + +W T++ G+ +  + + A  LF  M       P+R  +++ +I  AYS++    +   
Sbjct: 88  LFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQVEPQR--LTYPSIFKAYSQLGLAHDGAQ 145

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           L  ++ ++G++ +     ++L   A  G +++   + +      +E +V+   +++   +
Sbjct: 146 LHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFN----QEMEFDVVSWNSMILGLA 201

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  +  +F+ +  K+  +WN+MI G   NG  K++L+LF +M +   QP+E T V+
Sbjct: 202 KCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVS 261

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV----DLLARAGMVEEAEKFIEE 325
           +L        +R G+ + E     Y  +  L+  A VV    D+  + G +  A +  E+
Sbjct: 262 LLNASAQIGALRQGVWIHE-----YIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEK 316

Query: 326 -KMGGLGGGDANVWGALLSAC 345
                L   ++ ++G  ++ C
Sbjct: 317 IPCRSLSSWNSMIFGLAVNGC 337


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 175/445 (39%), Positives = 265/445 (59%), Gaps = 12/445 (2%)

Query: 1   MIRGYMQANF-PKLSVFC-YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I+G++ +   P  S+   Y  ML     PNN+TFP L+ AC  +      GM +HAH+ 
Sbjct: 94  IIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI----QHGMQIHAHLF 149

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           KFGFG     ++SL+  Y     +  AR +F   P  D V+WT+++ GY K G  + A  
Sbjct: 150 KFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFT 209

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLG 177
           +F+ MP++N+ SW+A+MAAY + + F E  +LF +M+ E     ++    ++L+AC  LG
Sbjct: 210 IFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLG 269

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS--NKDAGAWNAM 235
           A+ QG W+H Y KR  +E +  L TA+VDMY KCG +  AL VF  +    +   +WN M
Sbjct: 270 ALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCM 329

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+AM+G+ + +++LF  M +    P + TF+ +LT C H+ +V +G N F  M  VYG
Sbjct: 330 IGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYG 389

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +EP++EH+ C+VDLL RAGMV EA K I+E        D  V G LL AC+ +  IE+G 
Sbjct: 390 IEPRMEHFGCMVDLLGRAGMVPEARKLIDEMP---VSPDVTVLGTLLGACKKHRNIELGE 446

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
            + R++ E+   +   +VL  N+Y  AG   +A KVRKL+ + G+KK PG S+IE+ G V
Sbjct: 447 EIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTV 506

Query: 416 EEFLAGDNRHAQAGEIYRVIHSFLK 440
            EF+AG+  H QA E++  ++  L+
Sbjct: 507 HEFIAGERNHPQAKELHAKVYEMLE 531


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 181/476 (38%), Positives = 271/476 (56%), Gaps = 40/476 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+G ++ N    +++ Y  M+ +   PN +T+P L KAC +   ++  G  +H HVVK 
Sbjct: 104 VIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQE-GRQIHGHVVKH 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE------ 114
           G G D  + S+ ++ Y+   ++  AR +F  S + DVV W TM+DGY K G  E      
Sbjct: 162 GIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220

Query: 115 -------------------------NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                                    +AR+LF++M ER+ +SWS+++  Y     +KE L 
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F+QMQ    +P    L SVL AC+++GAI QG WVH+Y KR  ++ + +L TA++DMY+
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYA 340

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +     VFE +  ++   WNAMI G+A++G A+ +LELF ++ +   +P   T V 
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVG 400

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VLT C HA  V  GL +F+ M   YGV+P+LEHY C+VDLL R+G+  EAE  I      
Sbjct: 401 VLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMP-- 458

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN 389
               +A VWGALL ACRI+G  ++  RV + L E+   +   +VL  NIY + G   + +
Sbjct: 459 -MKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVS 517

Query: 390 KVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR---VIHSFLKMS 442
           K+RKL+   G+K  PG S++++NG V EF  GD  H Q  EIYR   +I   L+M+
Sbjct: 518 KIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMA 573



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/383 (19%), Positives = 145/383 (37%), Gaps = 118/383 (30%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA V++ G  +D +V  +LL+ Y+  H                               +
Sbjct: 52  LHALVLRSGHFQDHYVSGALLKCYANPH-----------------------------FSN 82

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F+ A ++F  +P  N   W+ ++      +   + +  + +M  +  +PN+    ++  A
Sbjct: 83  FDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKA 141

Query: 173 CAHLGAITQGLWVHSYAKR------------------------------YHLEKNVILAT 202
           C+   A+ +G  +H +  +                              Y  E +V+   
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWN 201

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN---GDAKK------------ 247
            ++D Y KCG + +A  +F  +  K+ G+WN MI+G+A     GDA+K            
Sbjct: 202 TMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEIS 261

Query: 248 ----------------SLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMV 280
                           +LE+F +M +  T+P      +VL  C+           HA + 
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK 321

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
           R+ + L     AV G          ++D+ A+ G ++   +  EE    +   +   W A
Sbjct: 322 RNSIKL----DAVLGT--------ALLDMYAKCGRLDMGWEVFEE----MKEREIFTWNA 365

Query: 341 LLSACRIYGKIEVGNRVWRKLAE 363
           ++    I+G+ E    ++ KL E
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQE 388


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 177/425 (41%), Positives = 259/425 (60%), Gaps = 13/425 (3%)

Query: 14  SVFCYLDMLDM-GFEPNNYTFPPLIKACVI-LGPLENFGMFVHAHVVKFGFGEDPFVVSS 71
           S+  +L M+ + GF PN YTF  + KAC   LG LE  G  +  H +K G   + FV ++
Sbjct: 100 SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLE--GEQIRVHAIKIGLESNLFVTNA 157

Query: 72  LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSW 131
           ++  Y+    +  AR +FD S D+D+ +W  M+ GY   G+   A+E+F++M ER+ VSW
Sbjct: 158 MIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSW 217

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           + I+A Y ++  FKE L LF +M + G  PNE  L S L ACA+L A+ QG W+H Y  +
Sbjct: 218 TTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDK 277

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFE---GISNKDAGAWNAMISGVAMNGDAKKS 248
             ++ N  L  +++DMY+KCG +  A  VF    G+  K    WNAMI G AM+G +K++
Sbjct: 278 SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEA 336

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           ++LF++M      P + TFVA+L  C+H K+V +G   F++M++ YG+EP++EHY C+VD
Sbjct: 337 IDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVD 396

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           LL R+G+++EAE   E         DA +WGALL ACRI+  IE G R+ + + E+    
Sbjct: 397 LLGRSGLLKEAE---ETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDH 453

Query: 369 FSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
              HVL  N+Y  +G WD EA  VR+ I  +G KK PGCS IE+NGV  +FL GD  H Q
Sbjct: 454 IGCHVLLANLYSASGQWD-EAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQ 512

Query: 428 AGEIY 432
             ++Y
Sbjct: 513 TKQLY 517



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 125/312 (40%), Gaps = 69/312 (22%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFY--SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
            HAH++  G    P   + LL+    S    +  A  LFD+ P  DV  + TM+  +   
Sbjct: 34  THAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAH--- 90

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSV 169
                                 A++   S  S     + +F  M  V G  PN    V V
Sbjct: 91  ----------------------AVIPTSSHNS-----MRIFLSMVRVSGFLPNRYTFVFV 123

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
             AC +   + +G  +  +A +  LE N+ +  A++ MY+  G V  A  VF+   ++D 
Sbjct: 124 FKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDL 183

Query: 230 GAWNAMISGVAMNGDA-------------------------------KKSLELFDRMVKS 258
            +WN MI G   +G+                                K++L+LF  M+++
Sbjct: 184 YSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQT 243

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
           G  P E T  + L  C +   +  G  ++++ + S +   E  L   A ++D+ A+ G +
Sbjct: 244 GPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLL---ASLLDMYAKCGEI 300

Query: 317 EEAEKFIEEKMG 328
           + A K   ++ G
Sbjct: 301 DFAAKVFHDEYG 312



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 36/251 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q    K ++  + +ML  G  PN +T    + AC  L  L+  G ++H ++ K 
Sbjct: 220 IIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQ-GRWIHVYIDKS 278

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALF--DKSPDRDVVTWTTMVDGYGKMGDFENARE 118
               +  +++SLL+ Y+   ++  A  +F  +      V  W  M+ GY   G  + A +
Sbjct: 279 EIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAID 338

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE                               QM+   + PN+   V++L AC+H   
Sbjct: 339 LFE-------------------------------QMKVEKVSPNKVTFVALLNACSHGKL 367

Query: 179 ITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA-LSVFEGISNKDAGAWNAMI 236
           + +G  +  S A  Y +E  +     +VD+  + G +  A  +VF      DA  W A++
Sbjct: 368 VEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALL 427

Query: 237 SGVAMNGDAKK 247
               ++ D ++
Sbjct: 428 GACRIHKDIER 438


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 167/437 (38%), Positives = 266/437 (60%), Gaps = 3/437 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY++    + ++  + +M   G E P+  T    + AC  L  LE  G  +H +V K
Sbjct: 269 MISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLE-LGDEIHNYVRK 327

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              G    + ++LL+ Y+    +  AR +FD+   ++V+ WT+M+ GY   GD   AR+L
Sbjct: 328 -ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDL 386

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+K P R+ V W+A++  Y +   F + ++LFR+MQ   +KP++  +V++LT CA LGA+
Sbjct: 387 FDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGAL 446

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H Y     +  +V++ TA+++MYSKCG V  +L +F  + +KD  +W ++I G+
Sbjct: 447 EQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGL 506

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG   ++L LF  M + G +P + TF+ VL+ C+H  +V +G   F +M  V+ +EP+
Sbjct: 507 AMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPK 566

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY CV+DLL RAG+++EAE+ I+E           ++GALLSACRI+  +++G R+ +
Sbjct: 567 VEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAK 626

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL  +   D S H L  NIY       +A KVR+ + E G+KK PGCS+IEV+G+V EFL
Sbjct: 627 KLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFL 686

Query: 420 AGDNRHAQAGEIYRVIH 436
            GD  H +  EI  +++
Sbjct: 687 VGDPSHPEMIEICSMLN 703



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 176/404 (43%), Gaps = 84/404 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M++ Y +    +  +  +  + + G  P+ +T+P ++KA   L  +   G  V   +VK 
Sbjct: 168 MVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQ-GEKVRGFIVKT 226

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL++ Y  +  +  A+ LFD+   RD V+W  M+ GY +   FE+A    
Sbjct: 227 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA---- 282

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
                                      ++ FR+MQ+ G  KP+E+ +VS L+AC  L  +
Sbjct: 283 ---------------------------INTFREMQQEGNEKPDEATVVSTLSACTALKNL 315

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H+Y ++  L     +  A++DMY+KCG ++ A ++F+ +S K+   W +MISG 
Sbjct: 316 ELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGY 374

Query: 240 AMNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFV 268
              GD +++ +LFD+                               M     +P + T V
Sbjct: 375 INCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVV 434

Query: 269 AVLTTCTHAKMVRDGL----NLFEN---MSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            +LT C     +  G      L EN   M  V G          ++++ ++ G V+++ +
Sbjct: 435 TLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG--------TALIEMYSKCGCVDKSLE 486

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
              E    L   D   W +++    + GK     R++ ++  +G
Sbjct: 487 IFYE----LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVG 526



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           DRD +           +G+   A ++F  + + +   ++ ++  Y++    ++VL LF+Q
Sbjct: 128 DRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQ 187

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           ++E G+ P+      VL A   L  + QG  V  +  +  ++ +  +  +++DMY +  +
Sbjct: 188 LREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSN 247

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLT 272
           V +A  +F+ ++ +D+ +WN MISG       + ++  F  M + G + P E T V+ L+
Sbjct: 248 VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 307

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            CT  K +  G  +   +    G   ++++   ++D+ A+ G +  A    +E
Sbjct: 308 ACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDE 358


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 181/476 (38%), Positives = 271/476 (56%), Gaps = 40/476 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+G ++ N    +++ Y  M+ +   PN +T+P L KAC +   ++  G  +H HVVK 
Sbjct: 104 VIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQE-GRQIHGHVVKH 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE------ 114
           G G D  + S+ +  Y+   ++  AR +F  S + DVV W TM+DGY K G  E      
Sbjct: 162 GIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLF 220

Query: 115 -------------------------NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                                    +AR+LF++M ER+ +SWS+++  Y     +KE L 
Sbjct: 221 AQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALE 280

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F+QMQ    +P    L SVL AC+++GAI QG WVH+Y KR  ++ + +L TA++DMY+
Sbjct: 281 IFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYA 340

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +     VFE +  ++   WNAMI G+A++G A+ +LELF ++ +   +P   T V 
Sbjct: 341 KCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVG 400

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VLT C HA  V  GL +F+ M   YGV+P+LEHY C+VDLL R+G+  EAE  I      
Sbjct: 401 VLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMP-- 458

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN 389
               +A VWGALL ACRI+G  ++  RV + L E+   +   +VL  NIY + G   + +
Sbjct: 459 -MKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVS 517

Query: 390 KVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR---VIHSFLKMS 442
           K+RKL+ + G+K  PG S++++NG V EF  GD  H Q  EIYR   +I   L+M+
Sbjct: 518 KIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMA 573



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/383 (19%), Positives = 144/383 (37%), Gaps = 118/383 (30%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H  V++ G  +D +V  +LL+ Y+  H                               +
Sbjct: 52  LHGLVLRSGHFQDHYVSGALLKCYANPH-----------------------------FSN 82

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F+ A ++F  +P  N   W+ ++      +   + +  + +M  +  +PN+    ++  A
Sbjct: 83  FDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKA 141

Query: 173 CAHLGAITQGLWVHSYAKR------------------------------YHLEKNVILAT 202
           C+   A+ +G  +H +  +                              Y  E +V+   
Sbjct: 142 CSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWN 201

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN---GDAKK------------ 247
            ++D Y KCG + +A  +F  +  K+ G+WN MI+G+A     GDA+K            
Sbjct: 202 TMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEIS 261

Query: 248 ----------------SLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMV 280
                           +LE+F +M +  T+P      +VL  C+           HA + 
Sbjct: 262 WSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLK 321

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
           R+ + L     AV G          ++D+ A+ G ++   +  EE    +   +   W A
Sbjct: 322 RNSIKL----DAVLGT--------ALLDMYAKCGRLDMGWEVFEE----MKEREIFTWNA 365

Query: 341 LLSACRIYGKIEVGNRVWRKLAE 363
           ++    I+G+ E    ++ KL E
Sbjct: 366 MIGGLAIHGRAEDALELFSKLQE 388


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 167/437 (38%), Positives = 266/437 (60%), Gaps = 3/437 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY++    + ++  + +M   G E P+  T    + AC  L  LE  G  +H +V K
Sbjct: 315 MISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLE-LGDEIHNYVRK 373

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              G    + ++LL+ Y+    +  AR +FD+   ++V+ WT+M+ GY   GD   AR+L
Sbjct: 374 -ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDL 432

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+K P R+ V W+A++  Y +   F + ++LFR+MQ   +KP++  +V++LT CA LGA+
Sbjct: 433 FDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGAL 492

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H Y     +  +V++ TA+++MYSKCG V  +L +F  + +KD  +W ++I G+
Sbjct: 493 EQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGL 552

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG   ++L LF  M + G +P + TF+ VL+ C+H  +V +G   F +M  V+ +EP+
Sbjct: 553 AMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPK 612

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY CV+DLL RAG+++EAE+ I+E           ++GALLSACRI+  +++G R+ +
Sbjct: 613 VEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAK 672

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL  +   D S H L  NIY       +A KVR+ + E G+KK PGCS+IEV+G+V EFL
Sbjct: 673 KLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLIEVDGIVHEFL 732

Query: 420 AGDNRHAQAGEIYRVIH 436
            GD  H +  EI  +++
Sbjct: 733 VGDPSHPEMMEICSMLN 749



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 176/404 (43%), Gaps = 84/404 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M++ Y +    +  +  +  + + G  P+ +T+P ++KA   L  +   G  V   +VK 
Sbjct: 214 MVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQ-GEKVRGFIVKT 272

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL++ Y  +  +  A+ LFD+   RD V+W  M+ GY +   FE+A    
Sbjct: 273 GMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDA---- 328

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
                                      ++ FR+MQ+ G  KP+E+ +VS L+AC  L  +
Sbjct: 329 ---------------------------INTFREMQQEGNEKPDEATVVSTLSACTALKNL 361

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H+Y ++  L     +  A++DMY+KCG ++ A ++F+ +S K+   W +MISG 
Sbjct: 362 ELGDEIHNYVRK-ELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGY 420

Query: 240 AMNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFV 268
              GD +++ +LFD+                               M     +P + T V
Sbjct: 421 INCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVV 480

Query: 269 AVLTTCTHAKMVRDGL----NLFEN---MSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            +LT C     +  G      L EN   M  V G          ++++ ++ G V+++ +
Sbjct: 481 TLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG--------TALIEMYSKCGCVDKSLE 532

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
              E    L   D   W +++    + GK     R++ ++  +G
Sbjct: 533 IFYE----LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVG 572



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           DRD +           +G+   A ++F  + + +   ++ ++  Y++    ++VL LF+Q
Sbjct: 174 DRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQ 233

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           ++E G+ P+      VL A   L  + QG  V  +  +  ++ +  +  +++DMY +  +
Sbjct: 234 LREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSN 293

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLT 272
           V +A  +F+ ++ +D+ +WN MISG       + ++  F  M + G + P E T V+ L+
Sbjct: 294 VENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLS 353

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            CT  K +  G  +   +    G   ++++   ++D+ A+ G +  A    +E
Sbjct: 354 ACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGCLNIARNIFDE 404


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 265/443 (59%), Gaps = 4/443 (0%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           +R + + + P  ++  +  + +    P++YT   ++KAC  L  + N G  VH +V K G
Sbjct: 85  LRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN-GKIVHGYVEKLG 143

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
              + F+ + ++  Y+L  ++G AR +FDK P RDV+TW  M+    KMGD E A +LF 
Sbjct: 144 LQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFA 203

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MPERN  SW++++  Y++    KE + LF +M++ G+ PNE  +V+VL ACA +G +  
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  +H ++ R   EKN+ +   ++DMY KCG +  A  +F+ +  +   +W+AMI+G+A 
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G A+ +L LF++M+ +G +P   TF+ +L  C+H  MV  G   F +M+  YG+ P++E
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIE 383

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+VDL +RAG+++EA +FI   M      +  VWGALL  C+++  I++     R L
Sbjct: 384 HYGCMVDLFSRAGLLQEAHEFI---MNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHL 440

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
           +++   +   +V+  NIY EAG   +  +VRKL+ + G+KK PG S I V GVV  F+AG
Sbjct: 441 SKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAG 500

Query: 422 DNRHAQAGEIYRVIHSFLKMSNL 444
           D+ H Q  EI++     L+   L
Sbjct: 501 DDTHPQTEEIFQTWEKLLQRMKL 523



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 40/287 (13%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F  A+ +F+ +       W+  + +++      + +SLF +++E  + P+      VL A
Sbjct: 63  FSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKA 122

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+ L  +  G  VH Y ++  L+ N+ L   +V +Y+ CG +  A  VF+ +  +D   W
Sbjct: 123 CSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITW 182

Query: 233 N-------------------------------AMISGVAMNGDAKKSLELFDRMVKSGTQ 261
           N                               +MI G A  G +K++++LF  M  +G  
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL 242

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNL--FENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           P E T VAVL  C     +  G  +  F N S   G E  +     ++D+  + G +E+A
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRS---GYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +  +     +       W A+++    +G+ E    ++ K+   G+
Sbjct: 300 CRIFD----NMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGV 342



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 36/275 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q    K ++  +L+M D G  PN  T   ++ AC  +G L   G  +H    + 
Sbjct: 216 MIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLV-LGRRIHDFSNRS 274

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+ ++  V ++L++ Y     +  A  +FD   +R VV+W+ M+ G    G  E+A  LF
Sbjct: 275 GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM                                  G+KPN    + +L AC+H+G + 
Sbjct: 335 NKMI-------------------------------NTGVKPNAVTFIGILHACSHMGMVE 363

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMISG 238
           +G  +  S  + Y +   +     +VD++S+ G +  A      +     G  W A++ G
Sbjct: 364 KGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
             ++ + K + E    + K    P    +  VL+ 
Sbjct: 424 CKVHKNIKLAEEATRHLSK--LDPLNDGYYVVLSN 456


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/445 (37%), Positives = 269/445 (60%), Gaps = 4/445 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++  +   ++  Y +M   G +P+  T   ++ +C  L  L+  G   H ++ + 
Sbjct: 179 MINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLD-LGRESHCYIEEN 237

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ Y     + +AR LFD   ++ +V+WTTMV GY + G  + A +LF
Sbjct: 238 GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLF 297

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP+++ V W+A++  Y   +  KE L+LF +MQ + + P+E  +VS L+AC+ LGA+ 
Sbjct: 298 DEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALD 357

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y +++ L  NV L TA++DMY+KCG +  A+ VF+ +  +++  W A+ISG+A
Sbjct: 358 VGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLA 417

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G+A  ++  F  M+ +   P E TF+ +L+ C H  +V +G   F  MS+ + + P+L
Sbjct: 418 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 477

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+C+VDLL RAG++EEAE+ I+         DA VWGAL  ACRI+G + +G R   K
Sbjct: 478 KHYSCMVDLLGRAGLLEEAEELIKSMP---IEADAVVWGALFFACRIHGNVLMGERAASK 534

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L +M   D   +VL  N+Y EA    EA K RKL+ + G++K PGCS IEVNG+V EF+ 
Sbjct: 535 LLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIV 594

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
            D  H Q+ +IY  +    +   LV
Sbjct: 595 RDKSHPQSEQIYECLIQLTRQLELV 619



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 177/380 (46%), Gaps = 69/380 (18%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           IRG++ +  P+ +V  Y  +L   G +P+NYT+P L KAC  L  L   G  +  HV+  
Sbjct: 78  IRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS-LIRMGSEILGHVLHL 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV ++++        +  AR +FDKS  RD+V+W +M++GY + G         
Sbjct: 137 GFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG--------- 187

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                     W     AY       E L+ +R+M+  G+KP+E  ++ V+++CA L  + 
Sbjct: 188 ----------W-----AY-------EALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLD 225

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-------------- 226
            G   H Y +   L+  V LA A++DMY KCG++ SA  +F+ ++N              
Sbjct: 226 LGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYA 285

Query: 227 -----------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                            KD   WNAMI G       K++L LF+ M      P E T V+
Sbjct: 286 QSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVS 345

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
            L+ C+    +  G+ +   +   + +   +     ++D+ A+ G + +A +  +E    
Sbjct: 346 CLSACSQLGALDVGIWIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQE---- 400

Query: 330 LGGGDANVWGALLSACRIYG 349
           L G ++  W A++S   ++G
Sbjct: 401 LPGRNSLTWTAIISGLALHG 420



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 10/203 (4%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           N  SW+  +  +    + +E + L+ R +Q  G KP+      +  ACA L  I  G  +
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
             +      + ++ ++ AV+ +   CG +  A  +F+    +D  +WN+MI+G    G A
Sbjct: 130 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 189

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN----LFENMSAVYGVEPQLE 301
            ++L  +  M   G +P E T + V+++C   + +  G      + EN     G++  + 
Sbjct: 190 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEEN-----GLKLTVP 244

Query: 302 HYACVVDLLARAGMVEEAEKFIE 324
               ++D+  + G +E A K  +
Sbjct: 245 LANALMDMYMKCGNLESARKLFD 267


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 177/425 (41%), Positives = 259/425 (60%), Gaps = 13/425 (3%)

Query: 14  SVFCYLDMLDM-GFEPNNYTFPPLIKACVI-LGPLENFGMFVHAHVVKFGFGEDPFVVSS 71
           S+  +L M+ + GF PN YTF  + KAC   LG LE  G  +  H +K G   + FV ++
Sbjct: 15  SMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLE--GEQIRVHAIKIGLESNLFVTNA 72

Query: 72  LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSW 131
           ++  Y+    +  AR +FD S D+D+ +W  M+ GY   G+   A+E+F++M ER+ VSW
Sbjct: 73  MIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSW 132

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           + I+A Y ++  FKE L LF +M + G  PNE  L S L ACA+L A+ QG W+H Y  +
Sbjct: 133 TTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDK 192

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFE---GISNKDAGAWNAMISGVAMNGDAKKS 248
             ++ N  L  +++DMY+KCG +  A  VF    G+  K    WNAMI G AM+G +K++
Sbjct: 193 SEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK-VWPWNAMIGGYAMHGKSKEA 251

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           ++LF++M      P + TFVA+L  C+H K+V +G   F++M++ YG+EP++EHY C+VD
Sbjct: 252 IDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVD 311

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           LL R+G+++EAE   E         DA +WGALL ACRI+  IE G R+ + + E+    
Sbjct: 312 LLGRSGLLKEAE---ETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDH 368

Query: 369 FSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
              HVL  N+Y  +G WD EA  VR+ I  +G KK PGCS IE+NGV  +FL GD  H Q
Sbjct: 369 IGCHVLLANLYSASGQWD-EAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQ 427

Query: 428 AGEIY 432
             ++Y
Sbjct: 428 TKQLY 432



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 36/251 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q    K ++  + +ML  G  PN +T    + AC  L  L+  G ++H ++ K 
Sbjct: 135 IIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQ-GRWIHVYIDKS 193

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALF--DKSPDRDVVTWTTMVDGYGKMGDFENARE 118
               +  +++SLL+ Y+   ++  A  +F  +      V  W  M+ GY   G  + A +
Sbjct: 194 EIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAID 253

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE                               QM+   + PN+   V++L AC+H   
Sbjct: 254 LFE-------------------------------QMKVEKVSPNKVTFVALLNACSHGKL 282

Query: 179 ITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA-LSVFEGISNKDAGAWNAMI 236
           + +G  +  S A  Y +E  +     +VD+  + G +  A  +VF      DA  W A++
Sbjct: 283 VEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALL 342

Query: 237 SGVAMNGDAKK 247
               ++ D ++
Sbjct: 343 GACRIHKDIER 353


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 170/432 (39%), Positives = 251/432 (58%), Gaps = 6/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+  ++ P+ S+  Y  ML      N YTFP L+KAC  L  LE     +HA + K 
Sbjct: 115 MIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQ-IHAQITKL 173

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D + V+SL+  Y+       A  LFD+ P  D V+W +++ GY K G  + A  LF
Sbjct: 174 GYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLF 233

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM E+NA+SW+ +++ Y +    KE L LF +MQ   ++P+   L + L+ACA LGA+ 
Sbjct: 234 RKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALE 293

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+HSY  +  +  + +L   ++DMY+KCG +  AL VF+ I  K   AW A+ISG A
Sbjct: 294 QGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYA 353

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  ++++  F  M K G +P   TF  VLT C++  +V +G  +F NM   Y ++P +
Sbjct: 354 YHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTI 413

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY CVVDLL+RAG+++EA++FI+E        +A +WGALL ACRI+  IE+G  +   
Sbjct: 414 EHYGCVVDLLSRAGLLDEAKRFIQEMP---LKPNAVIWGALLKACRIHKNIELGEEIGEI 470

Query: 361 LAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L  +       +V   NI+     WD +A + R+L+ E G+ K PGCS I + G   EFL
Sbjct: 471 LIAIDPYHGGRYVHKANIHAMGKKWD-KAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 529

Query: 420 AGDNRHAQAGEI 431
           AGD  H +  +I
Sbjct: 530 AGDRSHPEIEKI 541



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 39/271 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEF---YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           +HA ++K G  +D + ++  L      +    +  A+ +FD     D   W  M+ G+  
Sbjct: 62  IHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSC 121

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
             + E +  L+++M     +  SA   AY+                            S+
Sbjct: 122 SDEPERSLLLYQRM-----LCCSAPHNAYT--------------------------FPSL 150

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L AC++L A+ +   +H+   +   E +V    ++++ Y+  G+   A  +F+ I   DA
Sbjct: 151 LKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDA 210

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +WN++I G A  G    +L LF +MV+        ++  +++    A M ++ L LF  
Sbjct: 211 VSWNSVIKGYAKAGKMDIALTLFRKMVEKNA----ISWTTMISGYVQAGMHKEALQLFHE 266

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           M     VEP     A  +   A+ G +E+ +
Sbjct: 267 MQNS-DVEPDNVSLANALSACAQLGALEQGK 296


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/436 (38%), Positives = 267/436 (61%), Gaps = 6/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+          ++  Y  +L      + Y+ P ++KA V L  + + G  +H   +  
Sbjct: 110 IIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI-HVGRQIHCQAIGT 168

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  VV++L++ YS    +  AR LFD    RDV  W  MV GY K+GD +NAR LF
Sbjct: 169 GLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLF 228

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+MPERN +SW+A++A Y+++    E +++FR+MQ   ++P+E  +++ L+ACAHLGA+ 
Sbjct: 229 ERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALE 288

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H+Y  ++ L K V L  A++DMY+KCG +  AL VF+ + +K    W +MI G+A
Sbjct: 289 LGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLA 348

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +++LE+F  M ++  +P E TFVA+L+ C H  +V  G   F+ M   YG++P++
Sbjct: 349 LHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C++DLL RAG ++EA++ +    G     +A +WG+LL+A RI+G  E+G +  + 
Sbjct: 409 QHYGCMIDLLGRAGFLQEAQELVR---GMPFEANAPIWGSLLAAARIHGDAELGKQALQH 465

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L ++   +   + L  NIY  ++ W+ EA  VRK++ +TG+KK PG S IEVN  V EF+
Sbjct: 466 LIKVEPHNSGNYTLLSNIYATQSKWN-EAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFV 524

Query: 420 AGDNRHAQAGEIYRVI 435
           AGD  H Q+  I+ V+
Sbjct: 525 AGDKLHPQSERIFEVL 540



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 32/283 (11%)

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           ++S L +  +L H   T   +  +  D+D +  +  ++    +G    +  +F      +
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
              ++ I+ A S      E + L+ ++    ++ +   L  VL A   L AI  G  +H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
            A    L  ++ + TA++ MYS CG V  A  +F+G+  +D   WNAM++G A  GD   
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 248 SLELFDRMVKSG-------------------------------TQPTETTFVAVLTTCTH 276
           +  LF+RM +                                  +P E   +A L+ C H
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
              +  G     N    +G+   +     ++D+ A+ G +E+A
Sbjct: 284 LGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKA 325


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/436 (38%), Positives = 267/436 (61%), Gaps = 6/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+          ++  Y  +L      + Y+ P ++KA V L  + + G  +H   +  
Sbjct: 110 IIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAI-HVGRQIHCQAIGT 168

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  VV++L++ YS    +  AR LFD    RDV  W  MV GY K+GD +NAR LF
Sbjct: 169 GLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDNARHLF 228

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+MPERN +SW+A++A Y+++    E +++FR+MQ   ++P+E  +++ L+ACAHLGA+ 
Sbjct: 229 ERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALE 288

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H+Y  ++ L K V L  A++DMY+KCG +  AL VF+ + +K    W +MI G+A
Sbjct: 289 LGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLA 348

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +++LE+F  M ++  +P E TFVA+L+ C H  +V  G   F+ M   YG++P++
Sbjct: 349 LHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKI 408

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C++DLL RAG ++EA++ +    G     +A +WG+LL+A RI+G  E+G +  + 
Sbjct: 409 QHYGCMIDLLGRAGFLQEAQELVR---GMPFEANAPIWGSLLAAARIHGDAELGKQALQH 465

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L ++   +   + L  NIY  ++ W+ EA  VRK++ +TG+KK PG S IEVN  V EF+
Sbjct: 466 LIKVEPHNSGNYTLLSNIYATQSKWN-EAGMVRKVMRDTGVKKMPGGSCIEVNNRVHEFV 524

Query: 420 AGDNRHAQAGEIYRVI 435
           AGD  H Q+  I+ V+
Sbjct: 525 AGDKLHPQSERIFEVL 540



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 116/283 (40%), Gaps = 32/283 (11%)

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           ++S L +  +L H   T   +  +  D+D +  +  ++    +G    +  +F      +
Sbjct: 44  LLSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEACSSLGFSHYSHSIFTHKTRPD 103

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
              ++ I+ A S      E + L+ ++    ++ +   L  VL A   L AI  G  +H 
Sbjct: 104 IYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQIHC 163

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
            A    L  ++ + TA++ MYS CG V  A  +F+G+  +D   WNAM++G A  GD   
Sbjct: 164 QAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAMVAGYAKVGDVDN 223

Query: 248 SLELFDRMVKSG-------------------------------TQPTETTFVAVLTTCTH 276
           +  LF+RM +                                  +P E   +A L+ C H
Sbjct: 224 ARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAH 283

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
              +  G     N    +G+   +     ++D+ A+ G +E+A
Sbjct: 284 LGALELG-EWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKA 325


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/451 (39%), Positives = 270/451 (59%), Gaps = 15/451 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA-----CVILGPLENFGMFVHA 55
           +IR +     P  +   Y  ML     P+N TFP LIKA     CV++G         H+
Sbjct: 90  LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVVVGEQ------THS 143

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            +V+FGF  D +V +SL+  Y+    +  A  +F + P RDVV+WT+MV GY K G  E+
Sbjct: 144 QIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVED 203

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           ARE+F++MP RN  +WS ++  Y++ + F++ + LF  M+  G+  NE+ +VSV+++CAH
Sbjct: 204 AREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAH 263

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G   H Y  + H+  N+IL TA+VDMY +CG +  A+ VFE + +KD+ +W+++
Sbjct: 264 LGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSI 323

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+A++G A K++  F +MV+ G  P + T  AVL+ C+H  +V  GL ++ENM   YG
Sbjct: 324 IKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYG 383

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +EP+LEHY C+VD+L RAG + EAE FI   +      +A + GALL AC+IY   EV  
Sbjct: 384 IEPRLEHYGCIVDMLGRAGKLAEAENFI---LKMPVKPNAPILGALLGACKIYKNTEVAE 440

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           RV   L E+       +VL  NIY  AG   +   +R ++ E  +KK PG S+IE++G +
Sbjct: 441 RVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKI 500

Query: 416 EEFLAGDN-RHAQAGEIYRVIHSFLKMSNLV 445
            +F  GD+ +H + G+I R+    L    L+
Sbjct: 501 NKFSMGDDQKHPEMGKIKRLWEEILGKIRLI 531



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/280 (19%), Positives = 118/280 (42%), Gaps = 36/280 (12%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F ++   N   ++ ++  +S  ++  +    + QM +  + P+      ++ A   +  
Sbjct: 75  IFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMEC 134

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYS----------------------------- 209
           +  G   HS   R+  + +V +  ++V MY+                             
Sbjct: 135 VVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAG 194

Query: 210 --KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
             KCG V  A  +F+ + +++   W+ MI+G A N   +K+++LF+ M + G    ET  
Sbjct: 195 YCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVM 254

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V+V+++C H   +  G    E +   + +   L     +VD+  R G +E+A +  EE  
Sbjct: 255 VSVISSCAHLGALEFGERAHEYVVKSH-MTVNLILGTALVDMYWRCGEIEKAIRVFEE-- 311

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
             L   D+  W +++    ++G        + ++  +G +
Sbjct: 312 --LPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFS 349


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/447 (40%), Positives = 265/447 (59%), Gaps = 11/447 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y+Q+N  + ++  Y  M+     P+NYT+P +++AC +   LE  G  +H HV+K 
Sbjct: 100 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV-RLLEFGGKEIHDHVLKV 158

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY---GKMGDFENAR 117
           GF  D +V ++L+  Y++   M  AR LFD+SP  D V+W +++ GY   G MG    A 
Sbjct: 159 GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAW 218

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF +M E++ VSWSA+++ Y +   ++E L +F +M   GM+ +E  +VSVL+ACAHL 
Sbjct: 219 KLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS 278

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVV----DMYSKCGHVHSALSVFEGISNKDAGAWN 233
            +  G  +H    R  +E  V L  A++    DMY KCG V +AL VF G+  K   +WN
Sbjct: 279 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWN 338

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           A+I G+A+NG  ++SL++F  M  +G  P E TF+ VL  C H  +V +G   F +M   
Sbjct: 339 ALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEK 398

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+EP ++HY C+VDLL RAG++ EAEK IE         D   WGALL AC+ +G  E+
Sbjct: 399 HGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP---MAPDVATWGALLGACKKHGDTEM 455

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G RV RKL E+       HVL  NI+   G   +  +VR ++ + G+ K PGCS+IE NG
Sbjct: 456 GERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANG 515

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           VV EFLAGD  H    ++  +++   K
Sbjct: 516 VVHEFLAGDKTHPWINKVEGMLNEMAK 542



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 5/172 (2%)

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           +L +F+ I N +   WN M+     +  A+K+L L+  MVK+   P   T+  V+  C  
Sbjct: 82  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 141

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
             +   G  + +++  V G +  +     ++++ A  G + +A K  +E        D+ 
Sbjct: 142 RLLEFGGKEIHDHVLKV-GFDSDVYVQNTLINMYAVCGNMRDARKLFDES----PVLDSV 196

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
            W ++L+     G +      W+   EM   D  +     + Y++ G   EA
Sbjct: 197 SWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEA 248


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 168/432 (38%), Positives = 253/432 (58%), Gaps = 6/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+  ++ P+ S+  Y  ML      N YTFP L+KAC  L   E     +HA + K 
Sbjct: 86  MIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ-IHAQITKL 144

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D + V+SL+  Y++      A  LFD+ P+ D V+W +++ GY K G  + A  LF
Sbjct: 145 GYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLF 204

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM E+NA+SW+ +++ Y +    KE L LF +MQ   ++P+   L + L+ACA LGA+ 
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALE 264

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+HSY  +  +  + +L   ++DMY+KCG +  AL VF+ I  K   AW A+ISG A
Sbjct: 265 QGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYA 324

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  ++++  F  M K G +P   TF AVLT C++  +V +G  +F +M   Y ++P +
Sbjct: 325 YHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTI 384

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EA++FI+E        +A +WGALL ACRI+  IE+G  +   
Sbjct: 385 EHYGCIVDLLGRAGLLDEAKRFIQEMP---LKPNAVIWGALLKACRIHKNIELGEEIGEI 441

Query: 361 LAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L  +       +V   NI+  +  WD +A + R+L+ E G+ K PGCS I + G   EFL
Sbjct: 442 LIAIDPYHGGRYVHKANIHAMDKKWD-KAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 500

Query: 420 AGDNRHAQAGEI 431
           AGD  H +  +I
Sbjct: 501 AGDRSHPEIEKI 512



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 136/367 (37%), Gaps = 89/367 (24%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEF---YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           +HA ++K G  +D + ++  L F    +    +  A+ +FD     D   W  M+ G+  
Sbjct: 33  IHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSC 92

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
             +           PER+                    L L+++M       N     S+
Sbjct: 93  SDE-----------PERS--------------------LLLYQRMLCSSAPHNAYTFPSL 121

Query: 170 LTACAHLGAITQGLWVH--------------------SYA-----KRYHL------EKNV 198
           L AC++L A  +   +H                    SYA     K  HL      E + 
Sbjct: 122 LKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +   +V+  Y K G +  AL++F  ++ K+A +W  MISG       K++L+LF  M  S
Sbjct: 182 VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS 241

Query: 259 GTQPTETTFVAVLTTCT------HAKMVRDGLNLFE-NMSAVYGVEPQLEHYACV-VDLL 310
             +P   +    L+ C         K +   LN     M +V G         CV +D+ 
Sbjct: 242 DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG---------CVLIDMY 292

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
           A+ G +EEA     E    +       W AL+S    +G    G     K  EM      
Sbjct: 293 AKCGEMEEA----LEVFKNIKKKSVQAWTALISGYAYHGH---GREAISKFMEMQKMGIK 345

Query: 371 THVLSYN 377
            +V+++ 
Sbjct: 346 PNVITFT 352


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 159/438 (36%), Positives = 270/438 (61%), Gaps = 4/438 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +    + +++ Y  M   G +P++ T   L+ +C +LG L N G   + +V + 
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDL-NRGKEFYEYVKEN 286

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      +V++L++ +S    +  AR +FD    R +V+WTTM+ GY + G  + +R+LF
Sbjct: 287 GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLF 346

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E++ V W+A++    +    ++ L+LF++MQ    KP+E  ++  L+AC+ LGA+ 
Sbjct: 347 DDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALD 406

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y ++Y L  NV L T++VDMY+KCG++  ALSVF GI  +++  + A+I G+A
Sbjct: 407 VGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++GDA  ++  F+ M+ +G  P E TF+ +L+ C H  M++ G + F  M + + + PQL
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+ +VDLL RAG++EEA++ +E         DA VWGALL  CR++G +E+G +  +K
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMP---MEADAAVWGALLFGCRMHGNVELGEKAAKK 583

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+  +D   +VL   +Y EA    +A + R++++E G++K PGCS IEVNG+V EF+ 
Sbjct: 584 LLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIV 643

Query: 421 GDNRHAQAGEIYRVIHSF 438
            D    ++ +IY  +H  
Sbjct: 644 RDKSRPESEKIYDRLHCL 661



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 173/399 (43%), Gaps = 71/399 (17%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGF---EPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           IRG+ ++  PK S   Y  ML  G     P+++T+P L K C  L  L + G  +  HV+
Sbjct: 125 IRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL-RLSSLGHMILGHVL 183

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K             LE  S VH                       +  +   GD ENAR+
Sbjct: 184 KLR-----------LELVSHVHNAS--------------------IHMFASCGDMENARK 212

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F++ P R+ VSW+ ++  Y +I + ++ + +++ M+  G+KP++  ++ ++++C+ LG 
Sbjct: 213 VFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGD 272

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN------------ 226
           + +G   + Y K   L   + L  A++DM+SKCG +H A  +F+ +              
Sbjct: 273 LNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISG 332

Query: 227 -------------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
                              KD   WNAMI G       + +L LF  M  S T+P E T 
Sbjct: 333 YARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITM 392

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           +  L+ C+    +  G+ +   +   Y +   +     +VD+ A+ G + EA        
Sbjct: 393 IHCLSACSQLGALDVGIWIHRYIEK-YSLSLNVALGTSLVDMYAKCGNISEALSVFH--- 448

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            G+   ++  + A++    ++G        + ++ + GI
Sbjct: 449 -GIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGI 486



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/334 (19%), Positives = 141/334 (42%), Gaps = 41/334 (12%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L++ C +L  L+     + A ++  G   DPF  S L+ F +L      +R L       
Sbjct: 59  LLEKCKLLLHLKQ----IQAQMIINGLILDPFASSRLIAFCAL----SESRYL------- 103

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
                             + + ++ + +   N  SW+  +  +S   + KE   L++QM 
Sbjct: 104 ------------------DYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQML 145

Query: 156 EVGM---KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
             G    +P+      +   CA L   + G  +  +  +  LE    +  A + M++ CG
Sbjct: 146 RHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCG 205

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            + +A  VF+    +D  +WN +I+G    G+A+K++ ++  M   G +P + T + +++
Sbjct: 206 DMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVS 265

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
           +C+    +  G   +E +    G+   +     ++D+ ++ G + EA +  +     L  
Sbjct: 266 SCSMLGDLNRGKEFYEYVKE-NGLRMTIPLVNALMDMFSKCGDIHEARRIFD----NLEK 320

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
                W  ++S     G ++V  +++  + E  +
Sbjct: 321 RTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDV 354


>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 525

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 168/438 (38%), Positives = 270/438 (61%), Gaps = 4/438 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ ++  N  K ++  ++ ML    +P+NYT P ++KAC       +FG  +H +  K 
Sbjct: 78  LIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGTFHDC-SFGKMIHGYSSKL 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL+  Y +   +  AR +FD+ P  +VV+W+ M+ GY K+GD ++AR  F
Sbjct: 137 GLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFF 196

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++ PE++   W A+++ Y + S FKE L LFR MQ   + P+ES  VS+L+ACAHLGA+ 
Sbjct: 197 DEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALE 256

Query: 181 QGLWVHSYAKRYHL-EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            G+W+H +  +  L   +V L+T+++DMY+KCG++  A  +F+ ++ +D   WNAMISG+
Sbjct: 257 IGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGM 316

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+GD K +L+LF  M K G +P + TF+AV T C+++ M  +GL L + M +VY + P+
Sbjct: 317 AMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPK 376

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRVW 358
            EHY C+VDLL+RAG+ EEA   I +      G +  + W A LSAC  +G+ ++     
Sbjct: 377 SEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLAELAA 436

Query: 359 RKLAEMGITDFS-THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            K+ ++     S  +VL  N+Y  +G   +A +VR ++   G  K PGCS +E++GV+ E
Sbjct: 437 EKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCSSVEIDGVISE 496

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F+AG+  H Q  EI+ V+
Sbjct: 497 FIAGEKTHPQMEEIHSVL 514



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 128/282 (45%), Gaps = 35/282 (12%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +FE++       ++ ++ A+   + FK  L +F +M +  +KP+   +  VL AC  
Sbjct: 60  ACRVFEQIQNPTVCIYNTLIKAFLVNNKFKSALQVFVKMLQSELKPDNYTIPYVLKACGT 119

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
               + G  +H Y+ +  L  ++ +  +++ MY   G V +A  VF+ I + +  +W+ M
Sbjct: 120 FHDCSFGKMIHGYSSKLGLVFDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVM 179

Query: 236 ISGVAMNGDA-------------------------------KKSLELFDRMVKSGTQPTE 264
           ISG A  GD                                K+SL LF  M  +   P E
Sbjct: 180 ISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIVPDE 239

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           + FV++L+ C H   +  G+ + ++++ +  V   +     ++D+ A+ G +E A++  +
Sbjct: 240 SIFVSILSACAHLGALEIGVWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFD 299

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
                +   D   W A++S   ++G  +   +++  + ++G+
Sbjct: 300 ----SMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGV 337


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 187/504 (37%), Positives = 274/504 (54%), Gaps = 67/504 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY Q+   +  VF +  M  M   PN +TFP ++K+C  +  L   G  VH  ++K 
Sbjct: 170 MFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIE-GEQVHCFLIKC 228

Query: 61  GFGEDPFVVSSLLEFYS-------------------------------LVHKMGTARALF 89
           GF  +PFV ++L++ YS                               L   + +AR LF
Sbjct: 229 GFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF 288

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELF----------------------------- 120
           D +P+RDVV W  MV GY + GD   AR+LF                             
Sbjct: 289 DLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALEG 348

Query: 121 --EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLG 177
             E+MPERN  SW+A++  Y+    F EVL  F++M  E  + PN++ LV+VL+ACA LG
Sbjct: 349 LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 408

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+  G WVH YA+   L+ NV +  A++DMY+KCG + +A+SVF G+  KD  +WN +I 
Sbjct: 409 ALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIG 468

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+AM+     +L LF +M  +G +P   TF+ +L  CTH  +V DG   F++M+  Y + 
Sbjct: 469 GLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIM 528

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           PQ+EHY C+VD+LARAG +E+A  F+  KM      D  +W  LL ACRIY  +E+    
Sbjct: 529 PQIEHYGCMVDMLARAGRLEQAXAFV-RKMP--VEADGVIWAGLLGACRIYKNVELAELA 585

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            ++L E+   + + +V+  NIY +AG   +  +++  + +TG KK PGCS+IEVN  V E
Sbjct: 586 LQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVE 645

Query: 418 FLAGDNRHAQAGEIYRVIHSFLKM 441
           F + D RH Q  EIY V+   +K+
Sbjct: 646 FYSLDERHPQIEEIYGVLRGLVKV 669



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 31/201 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           + A ++  GF  + ++   L+   + + +M  AR LFD+ PD ++  W +M  G      
Sbjct: 120 IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRG------ 173

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                    Y++   ++EV+ LF QM+ + ++PN      VL +
Sbjct: 174 -------------------------YAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 208

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C  + A+ +G  VH +  +     N  + T ++DMYS  G V  A  +F  +  ++  AW
Sbjct: 209 CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAW 268

Query: 233 NAMISGVAMNGDAKKSLELFD 253
            +MI+G  ++ D   +  LFD
Sbjct: 269 TSMINGYILSADLVSARRLFD 289


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 187/504 (37%), Positives = 274/504 (54%), Gaps = 67/504 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY Q+   +  VF +  M  M   PN +TFP ++K+C  +  L   G  VH  ++K 
Sbjct: 107 MFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIE-GEQVHCFLIKC 165

Query: 61  GFGEDPFVVSSLLEFYS-------------------------------LVHKMGTARALF 89
           GF  +PFV ++L++ YS                               L   + +AR LF
Sbjct: 166 GFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRLF 225

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELF----------------------------- 120
           D +P+RDVV W  MV GY + GD   AR+LF                             
Sbjct: 226 DLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEG 285

Query: 121 --EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLG 177
             E+MPERN  SW+A++  Y+    F EVL  F++M  E  + PN++ LV+VL+ACA LG
Sbjct: 286 LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 345

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+  G WVH YA+   L+ NV +  A++DMY+KCG + +A+SVF G+  KD  +WN +I 
Sbjct: 346 ALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIG 405

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+AM+     +L LF +M  +G +P   TF+ +L  CTH  +V DG   F++M+  Y + 
Sbjct: 406 GLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIM 465

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           PQ+EHY C+VD+LARAG +E+A  F+  KM      D  +W  LL ACRIY  +E+    
Sbjct: 466 PQIEHYGCMVDMLARAGRLEQAMAFV-RKMP--VEADGVIWAGLLGACRIYKNVELAELA 522

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            ++L E+   + + +V+  NIY +AG   +  +++  + +TG KK PGCS+IEVN  V E
Sbjct: 523 LQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVE 582

Query: 418 FLAGDNRHAQAGEIYRVIHSFLKM 441
           F + D RH Q  EIY V+   +K+
Sbjct: 583 FYSLDERHPQIEEIYGVLRGLVKV 606



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 31/201 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           + A ++  GF  + ++   L+   + + +M  AR LFD+ PD ++  W +M  G      
Sbjct: 57  IQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALWNSMFRG------ 110

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                    Y++   ++EV+ LF QM+ + ++PN      VL +
Sbjct: 111 -------------------------YAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKS 145

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C  + A+ +G  VH +  +     N  + T ++DMYS  G V  A  +F  +  ++  AW
Sbjct: 146 CGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAW 205

Query: 233 NAMISGVAMNGDAKKSLELFD 253
            +MI+G  ++ D   +  LFD
Sbjct: 206 TSMINGYILSADLVSARRLFD 226


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/433 (39%), Positives = 261/433 (60%), Gaps = 5/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  + Q N P+ ++  +L M      PN+ T   ++ AC     LE FG +V +++ + 
Sbjct: 198 MISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLE-FGRWVCSYIERK 256

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + +++L+ Y+    +  A+ LFD+ P+RDV +WT M+DGY KMGD++ AR +F
Sbjct: 257 GIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVF 316

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAI 179
             MP +   +W+ +++AY +    KE L++F ++Q   + KP+E  LVS L+ACA LGAI
Sbjct: 317 NAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAI 376

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H Y KR  +  N  L +++VDMY+KCG +  AL VF  +  +D   W+AMI+G+
Sbjct: 377 DLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGL 436

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            M+G  K +++LF  M ++  +P   TF  VL  C+HA +V +G   F  M  VYGV P+
Sbjct: 437 GMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPE 496

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HYAC+VD+L RAG +EEA + I E         A+VWGALL AC ++  +E+G     
Sbjct: 497 MKHYACMVDILGRAGFLEEAMELINEMS---TTPSASVWGALLGACSLHMNVELGELASD 553

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L ++   +    VL  NIY + G   + +++RKL+ +T +KK+PGCS IE NG V EFL
Sbjct: 554 QLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFL 613

Query: 420 AGDNRHAQAGEIY 432
            GDN H  +  IY
Sbjct: 614 VGDNTHPLSSNIY 626



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 172/388 (44%), Gaps = 80/388 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y  ++ P  S   +LD+LD   + PN +TFP +IKA   L      G  VH   +K
Sbjct: 96  LIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKA-SRVGTAVHGMAIK 154

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             FG D ++++SL+ FY     +  A  LF     +DVV+W +M+  + +    E+A EL
Sbjct: 155 LSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALEL 214

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F KM   N +                               PN   +V VL+ACA    +
Sbjct: 215 FLKMERENVM-------------------------------PNSVTMVGVLSACAKKLDL 243

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA---------- 229
             G WV SY +R  ++ ++ L  A++DMY+KCG V  A  +F+ +  +D           
Sbjct: 244 EFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGY 303

Query: 230 ---------------------GAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTF 267
                                 AWN +IS    NG  K++L +F+ +  S   +P E T 
Sbjct: 304 AKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTL 363

Query: 268 VAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKF-- 322
           V+ L+ C     +  G  ++++       G+       + +VD+ A+ G +E+A E F  
Sbjct: 364 VSTLSACAQLGAIDLGGWIHVYIKRE---GIVLNCHLISSLVDMYAKCGSLEKALEVFYS 420

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGK 350
           +EE+       D  VW A+++   ++G+
Sbjct: 421 VEER-------DVYVWSAMIAGLGMHGR 441



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 122/274 (44%), Gaps = 31/274 (11%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA +++ G   DPF  S          K+ TA AL                        
Sbjct: 44  VHARMLRTGLFFDPFSAS----------KLFTASAL-------------------SSFST 74

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISD-FKEVLSLFRQMQEVGMKPNESGLVSVLT 171
            + AR LF+++P+ N  +W+ ++ AY+  SD F+  +     + +    PN+     V+ 
Sbjct: 75  LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           A + L A   G  VH  A +     ++ +  ++V  Y  CG +  A  +F+GIS KD  +
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN+MIS  A     + +LELF +M +    P   T V VL+ C     +  G  +   + 
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIE 254

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
              G++  L     ++D+  + G V++A+K  +E
Sbjct: 255 R-KGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDE 287


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/436 (38%), Positives = 254/436 (58%), Gaps = 9/436 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL----ENFGMFVHAH 56
           +IR +  +  P+ ++  Y  ++  G  P  +T P L+K+ + L P         + VHAH
Sbjct: 59  LIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKS-LALSPAVPGARRLALAVHAH 117

Query: 57  VVKFGFGEDPFVVSSLLEFYS-LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            V+ G      V ++L+  ++ L+ ++  A  L   S   D  T+ T++  + + G   +
Sbjct: 118 AVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVAD 177

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LF++MPERNAVSWSA++  Y +  D +E L +F QMQ  G++P+++ LV VL ACA 
Sbjct: 178 ARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQ 237

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+ QG WVH Y K  ++   V L TA+VDMY+KCG V   + VFEG+ +K+  AW  M
Sbjct: 238 LGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTM 297

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+AM+G    SL LF +M  SG +P +  F+  L  CTH  +V  G  LF +M   YG
Sbjct: 298 IKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYG 357

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++P++EHY C+VDLLAR G++ EA   + EKM      DA +WGAL++ CR +  +E+  
Sbjct: 358 IKPKIEHYGCMVDLLARNGLLSEARDMV-EKMP--MKPDALIWGALMAGCRFHKNVELAE 414

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
            V +   E+       +VL  NIY  +G    A ++R L+ E G++K PGCS +E+ GV+
Sbjct: 415 YVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVI 474

Query: 416 EEFLAGDNRHAQAGEI 431
            +F+ GD  H +  +I
Sbjct: 475 HQFIVGDLSHPRIKDI 490


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/446 (39%), Positives = 265/446 (59%), Gaps = 11/446 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI+ Y +    + S++ +  ML  G     + YTF  +  AC     L  +G  VH  VV
Sbjct: 125 MIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVV 184

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G+  D FV +SL+  YS+  +M  A+ +FD+ P RDV+TWT++V GY   G+   ARE
Sbjct: 185 KDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARE 244

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAH 175
           LF+ MP RN VSW+ ++A Y     + E L  F  M    EV  KPNE+ LVS+L+ACAH
Sbjct: 245 LFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEV--KPNEAVLVSILSACAH 302

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+ QG W+H Y  +  +  +  ++TA++DMY+KCG +  A  VF+G+  +D   W +M
Sbjct: 303 LGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSM 362

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ISG++M+G   + L  F  M+  G +P + T + VL  C+H+ +V +GL++F +M  ++G
Sbjct: 363 ISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWG 422

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P+LEHY C++DLL RAG +E A + I+         D   W ALLSACRI+G +++G 
Sbjct: 423 IVPKLEHYGCLIDLLGRAGRLESAFEAIKSMP---MEPDVVAWRALLSACRIHGDVDLGE 479

Query: 356 RVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           R+   +AE+   +    +VL  N+Y   G      KVRK +S+ G +  PGCS IE++GV
Sbjct: 480 RIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGV 539

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLK 440
           V EFLA D  H +  EI + ++  L+
Sbjct: 540 VHEFLAADKLHPRISEINKKLNEVLR 565



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/360 (20%), Positives = 143/360 (39%), Gaps = 80/360 (22%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P++ TF  L+K    L  ++     +HA VV  G  ++  ++  L+  Y     +  AR 
Sbjct: 53  PSHSTFVQLLKKRPSLTQIKQ----IHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARI 108

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           +FD+                            F  +P    + W+ ++ AYS+    +E 
Sbjct: 109 VFDQ----------------------------FPSLPP--TIIWNLMIQAYSKTPSSQES 138

Query: 148 LSLFRQMQEVGMKPNESG---LVSVLTACA-HLGAITQGLWVHSYAKRYHLEKNVILATA 203
           L LF QM   G +P  +       V TAC+ H      G  VH    +   E ++ +  +
Sbjct: 139 LYLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNS 197

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-------- 255
           +V+MYS    +  A  VF+ +  +D   W +++ G AM G+  ++ ELFD M        
Sbjct: 198 LVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSW 257

Query: 256 ------------------------VKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFEN 289
                                        +P E   V++L+ C H   +  G  ++++ +
Sbjct: 258 AVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYID 317

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            + +  +   +     ++D+ A+ G ++ A +  +    GL   D   W +++S   ++G
Sbjct: 318 KNRIL-LSSNIS--TALIDMYAKCGRIDCARRVFD----GLHKRDLLTWTSMISGLSMHG 370


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/454 (37%), Positives = 263/454 (57%), Gaps = 37/454 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  +  P+ ++  +  ML     P+ YTF   +K+C     +E  G  +H HV+K 
Sbjct: 79  IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEE-GRQIHGHVLKT 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTT------------------ 102
           G G+D F+ ++L+  Y+    +  AR L D+  +RDVV+W                    
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLF 197

Query: 103 -------------MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                        M+ GY  +G  E AR +F + P +N VSW+A++  YS    F EVL 
Sbjct: 198 DEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLV 257

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LF  MQ  G+KP+   LVSVL+ACAH+GA++QG WVH+Y  +  +  +  +ATA+VDMYS
Sbjct: 258 LFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYS 317

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  AL VF     KD   WN++ISG++ +G  + +L++F  M+  G +P E TFV 
Sbjct: 318 KCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVC 377

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VL+ C+ A ++ +G  +F  M  V+G++P +EHY C+VDLL R G++EEAE+ +++    
Sbjct: 378 VLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQK---- 433

Query: 330 LGGGDAN-VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
           +   +A+ VW +LL ACR +G +E+  RV +KL E+   + S+ V   N+Y   G   + 
Sbjct: 434 MPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDV 493

Query: 389 NKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
            +VR+ +   G++K PGCS+IEV+G V EFLAG+
Sbjct: 494 MEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAGE 527



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 117/276 (42%), Gaps = 32/276 (11%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F ++P  N+  W+ I+ AY+     +  L++F QM    + P++      L +C  
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
              + +G  +H +  +  L  ++ +   ++ +Y+ CG +  A  + + +  +D  +WNA+
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNAL 180

Query: 236 ISGVAMNGDAKKSLELFDRMVKS-------------------------GTQPTET--TFV 268
           +S  A  G  + +  LFD M +                          G  P +   ++ 
Sbjct: 181 LSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNVVSWN 240

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE---KFIEE 325
           A++T  +HA    + L LFE+M    GV+P       V+   A  G + + E    +I++
Sbjct: 241 AMITGYSHAGRFSEVLVLFEDMQHA-GVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDK 299

Query: 326 KMGGLGGGDANVWGALLSAC-RIYGKIEVGNRVWRK 360
               + G  A     + S C  I   +EV N   RK
Sbjct: 300 NGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRK 335



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 89/202 (44%), Gaps = 8/202 (3%)

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS---ALSVFEGISNKDAGAWNA 234
           +I++    H++  +  L  +   A+ ++   S   H  +   A S+F  I N ++  WN 
Sbjct: 19  SISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNT 78

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I   A +   + +L +F +M+ +   P + TF   L +C     V +G  +  ++    
Sbjct: 79  IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKT- 137

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+   L     ++ L A  G +E+A   ++  +      D   W ALLSA    G +E+ 
Sbjct: 138 GLGDDLFIQNTLIHLYASCGCIEDARHLLDRML----ERDVVSWNALLSAYAERGLMELA 193

Query: 355 NRVWRKLAEMGITDFSTHVLSY 376
             ++ ++ E  +  ++  +  Y
Sbjct: 194 CHLFDEMTERNVESWNFMISGY 215


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 169/447 (37%), Positives = 267/447 (59%), Gaps = 7/447 (1%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I GY+++  P+  L +F  L        P+  T    +  C  +G LE  G  +H  V 
Sbjct: 193 LIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLE-LGKRLHEFVD 251

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
             G      +++++++ Y     +  A ++F++  +R  V+WTTM+ G+ ++G  E+AR 
Sbjct: 252 NKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARM 311

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF++MPER+   W+A+MA Y +    KE ++LF +MQ+  + PNE  +V++L+AC+ LGA
Sbjct: 312 LFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGA 371

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G+WVH Y  R+ L  +V L T++VDMY+KCG++  A+ VF  I  ++A  W +MI G
Sbjct: 372 LEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICG 431

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G A +++E F RM+  G QP E TF+ VL+ C HA +V  G   F  M A Y +E 
Sbjct: 432 LANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLER 491

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +++HY+C++DLL RAG ++EAE+ +          DA VWGAL  ACR++G I +G +  
Sbjct: 492 KMKHYSCMIDLLGRAGHLDEAEQLVNAMP---MDPDAVVWGALFFACRMHGNITLGEKAA 548

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            KL E+  +D   +VL  N+Y EA    +A+KVR ++   G++K PGCS IE+NGVV EF
Sbjct: 549 MKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEF 608

Query: 419 LAGDNRHAQAGEIYRVIHSF-LKMSNL 444
           +  D  H     IY  +H   L+M ++
Sbjct: 609 IVKDKSHLDTNAIYDCLHEITLQMRHI 635



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 168/372 (45%), Gaps = 68/372 (18%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            P++ TFP LIKAC  L    ++G  V  HV K GF  D FVV++ + F+S+   M  AR
Sbjct: 118 RPDHLTFPFLIKACARLQ-YRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRGPMAFAR 176

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-NAVSWSAIMAAYSRISDFK 145
            LFD+SP RDVV+W T++ GY + G    A ELF ++ E  NAV                
Sbjct: 177 RLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAV---------------- 220

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
                         +P+E  ++  ++ CA +G +  G  +H +     +   V L  AV+
Sbjct: 221 --------------RPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVM 266

Query: 206 DMYSKCGHVHSALSVFEGISN-------------------------------KDAGAWNA 234
           DMY KCG +  A SVFE ISN                               +D   WNA
Sbjct: 267 DMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNA 326

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +++G   N   K+++ LF  M KS   P E T V +L+ C+    +  G+ +   +   +
Sbjct: 327 LMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDR-H 385

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            +   +     +VD+ A+ G +++A     E    +   +A  W +++     +G  +  
Sbjct: 386 KLHLSVALGTSLVDMYAKCGNIKKAICVFNE----IPVQNALTWTSMICGLANHGHADEA 441

Query: 355 NRVWRKLAEMGI 366
              ++++ ++G+
Sbjct: 442 IEYFQRMIDLGL 453



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 4/184 (2%)

Query: 145 KEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           +  L L+R +   G  +P+      ++ ACA L   + G  V  + ++     +V +  A
Sbjct: 102 RHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNA 161

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG--TQ 261
            +  +S  G +  A  +F+    +D  +WN +I G   +G  +++LELF R+ + G   +
Sbjct: 162 AMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVR 221

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E T +  ++ C     +  G  L E +    GV   +     V+D+  + G +E A  
Sbjct: 222 PDEVTVIGAVSGCAQMGDLELGKRLHEFVDN-KGVRCTVRLMNAVMDMYVKCGSLELANS 280

Query: 322 FIEE 325
             E 
Sbjct: 281 VFER 284


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/445 (37%), Positives = 266/445 (59%), Gaps = 4/445 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G ++      ++  Y +M      PN  T   +I +C  +  L N G   H ++ + 
Sbjct: 230 MITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDL-NLGKEFHCYIKEH 288

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ Y    ++ TAR LFD    + +V+WTTMV GY + G  + ARE+ 
Sbjct: 289 GLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREIL 348

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            K+PE++ V W+AI++   +    KE L+LF +MQ   ++P++  +V+ L+AC+ LGA+ 
Sbjct: 349 YKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALD 408

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y +R+ L  +V L TA+VDMY+KCG++  AL VFE I  ++   W A+I G+A
Sbjct: 409 VGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLA 468

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G+A+ +L  F +M+  G  P E TF+ VL+ C H  +V +G   F  MS+ + V P+L
Sbjct: 469 LHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKL 528

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+C+VDLL RAG +EEAE+ ++         DA V GAL  ACR+YG +++G R   K
Sbjct: 529 KHYSCMVDLLGRAGHLEEAEELVKNMP---MAADAAVLGALFFACRVYGNVQIGERTAFK 585

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   D   +VL  ++Y EA    EA   RKL+++ G++K PGCS++E+NG+V EF+ 
Sbjct: 586 LLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFVV 645

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
            D  H Q+  IY  + +  K  +++
Sbjct: 646 RDVSHPQSEWIYECLVTLTKQLDVI 670



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 177/402 (44%), Gaps = 79/402 (19%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLEN-FGMFVHAHVVK 59
           IRGY+++   +     Y  ML  G  +P+N+T+P L+K C   G   +  G+ V  HV+K
Sbjct: 129 IRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCC--GQYSSCLGLGVLGHVLK 186

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF  D FV ++ +       ++  A  +F+KS  RD+VTW +M+ G  K G        
Sbjct: 187 FGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRG-------- 238

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                        AI           E + ++++M+   ++PNE  ++ ++++C+ +  +
Sbjct: 239 ------------LAI-----------EAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDL 275

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G   H Y K + LE  + L  A++DMY KCG + +A  +F+ ++ K   +W  M+ G 
Sbjct: 276 NLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGY 335

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A  G    + E+  ++ +    P    + A+++ C  AK  ++ L LF  M  +  +EP 
Sbjct: 336 ARFGFLDVAREILYKIPEKSVVP----WNAIISGCVQAKQGKEALALFHEMQ-IRTIEPD 390

Query: 300 ----------------------LEHY-------------ACVVDLLARAGMVEEAEKFIE 324
                                 + HY               +VD+ A+ G +  A +  E
Sbjct: 391 KVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFE 450

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           E    +   +   W A++    ++G  +     + K+  +GI
Sbjct: 451 E----IPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGI 488



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 128/319 (40%), Gaps = 35/319 (10%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           + A +V  G  E+ F  S L+ F +L            +S + D  T             
Sbjct: 76  IQAQMVSTGLIENGFAASRLVAFCAL-----------SESKELDYCT------------- 111

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLT 171
                 +  ++ E N  SW+A +  Y    D +    L+++M   G +KP+      +L 
Sbjct: 112 -----RILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLK 166

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            C    +   GL V  +  ++  E ++ +  A + M   CG +  A  VF     +D   
Sbjct: 167 GCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVT 226

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN+MI+G    G A ++++++  M     +P E T + ++++C+  + +  G   F    
Sbjct: 227 WNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKE-FHCYI 285

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
             +G+E  +     ++D+  + G +  A    +     +       W  ++     +G +
Sbjct: 286 KEHGLEFTIPLTNALMDMYVKCGELLTARVLFD----NMAQKTLVSWTTMVLGYARFGFL 341

Query: 352 EVGNRVWRKLAEMGITDFS 370
           +V   +  K+ E  +  ++
Sbjct: 342 DVAREILYKIPEKSVVPWN 360


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  328 bits (842), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 188/473 (39%), Positives = 265/473 (56%), Gaps = 39/473 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+G +Q N P  ++ CY  M+     PN +T+P L KAC         G+ VHAHV+K 
Sbjct: 101 IIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAA-EAAEEGVQVHAHVIKQ 159

Query: 61  G-----------------FGE--------------DPFVVSSLLEFYSLVHKMGTARALF 89
           G                 FGE              D    +++++ Y    ++  A+ LF
Sbjct: 160 GLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELF 219

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
               D++V +W  MV G  K G  E ARELF +M E+N +SWSA++  Y +   +KE L 
Sbjct: 220 WSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALE 279

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F  MQ   ++P +  L SVL ACA+LGA+ QG W+H+Y        + +L TA+VDMY+
Sbjct: 280 VFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYA 339

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  A  VFE +  K+   WNAMI G+ M+G A+ ++ELF +M K   +P   T + 
Sbjct: 340 KCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLG 399

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VL+ C H+ MV +GL +F +M  VYG+EP +EHY CVVDLL RAG++ EA    EE M  
Sbjct: 400 VLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEA----EEVMYS 455

Query: 330 LG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDME 387
           +     A VWGALL ACR +G +E+G RV + L E+   +   + L  NIY  AG WD  
Sbjct: 456 MPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDV 515

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           AN VRKL+ E G+K   G S+I+ +GVV EF  GD  H Q   IY ++ + +K
Sbjct: 516 AN-VRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIK 567



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 42/269 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVH--KMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           VHA  ++ G  +D +V  +L++ Y+  H   +  A  +F+  P+ +V  +  ++ G    
Sbjct: 49  VHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGC--- 105

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
                   L    P +    +  +M A++R                    PN+    ++ 
Sbjct: 106 --------LQNNEPCKAICCYYKMMIAHAR--------------------PNKFTYPTLF 137

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC    A  +G+ VH++  +  L  +V + +A + MY   G V  A  +     N D  
Sbjct: 138 KACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVI 197

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            +NAMI G    G+ + + ELF  M +     +    V+ +  C    M+ +   LF  M
Sbjct: 198 CFNAMIDGYLKCGEVEAAKELFWSM-EDKNVGSWNVMVSGMAKCG---MIEEARELFNEM 253

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEA 319
                 E     ++ ++D   + G  +EA
Sbjct: 254 K-----EKNEISWSAMIDGYIKGGYYKEA 277


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/441 (39%), Positives = 264/441 (59%), Gaps = 6/441 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q    + ++  +++M   G   +      ++ AC  L  ++  G  +H  V++ 
Sbjct: 275 LISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKT-GKMIHGLVIRM 333

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L+  YS   ++  A+ LF+ S + D ++W +M+ G  K G  E AR LF
Sbjct: 334 GIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALF 393

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE++ VSWSA+++ Y++   F E L+LF +MQ   ++P+E+ LVSV++AC HL A+ 
Sbjct: 394 DVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALD 453

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG WVH+Y ++  L+ NVIL T ++DMY KCG V +AL VF G+  K   +WNA+I G+A
Sbjct: 454 QGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLA 513

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG  ++SL++F  M  +G  P E TF+ VL  C H  +V +G   F +M   +G+EP +
Sbjct: 514 VNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNV 573

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG++ EAEK IE         D   WGALL AC+ +G  E+G RV RK
Sbjct: 574 KHYGCMVDLLGRAGLLNEAEKLIESMP---MAPDVATWGALLGACKKHGDTEMGERVGRK 630

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+       HVL  NI+   G W+ +  +VR ++ + G+ K PGCS+IE NGVV EFL
Sbjct: 631 LIELQPDHDGFHVLLSNIFASKGDWE-DVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFL 689

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
           AGD  H    ++  +++   K
Sbjct: 690 AGDKTHPWINKVEGMLNEMAK 710



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 204/428 (47%), Gaps = 68/428 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y+Q+N  + ++  Y  M+     P+NYT+P +++AC +   LE  G  +H HV+K 
Sbjct: 112 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV-RLLEFGGKEIHDHVLKV 170

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V ++L+  Y++   M  AR LFD+SP  D V+W +++ GY K GD E A+ +F
Sbjct: 171 GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIF 230

Query: 121 EKMPERNAV-------------------------------SWSAIMAAYSRISDFKEVLS 149
           ++MP+RN V                               SWSA+++ Y +   ++E L 
Sbjct: 231 DQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALV 290

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F +M   GM+ +E  +VSVL+ACAHL  +  G  +H    R  +E  V L  A++ MYS
Sbjct: 291 MFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS 350

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM----------VKSG 259
             G +  A  +F G  N D  +WN+MISG    G  +K+  LFD M          V SG
Sbjct: 351 GSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISG 410

Query: 260 ---------------------TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
                                 +P ET  V+V++ CTH   +  G  +   +    G++ 
Sbjct: 411 YAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRK-NGLKV 469

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +     ++D+  + G VE A     E   G+     + W AL+    + G +E    ++
Sbjct: 470 NVILGTTLLDMYMKCGCVENA----LEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMF 525

Query: 359 RKLAEMGI 366
            ++   G+
Sbjct: 526 SEMKNNGV 533



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           +L +F+ I N +   WN M+     +  A+K+L L+  MVK+   P   T+  V+  C  
Sbjct: 94  SLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAV 153

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
             +   G  + +++  V G +  +     ++++ A  G + +A K  +E        D+ 
Sbjct: 154 RLLEFGGKEIHDHVLKV-GFDSDVYVQNTLINMYAVCGNMRDARKLFDES----PVLDSV 208

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396
            W ++L+     G +E    ++ ++ +  I   ++ ++   +  + G  MEA K+   + 
Sbjct: 209 SWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIV---LLGKMGQVMEAWKLFNEMD 265

Query: 397 ETGMKKKPG-CSVIEVNGVVEEFL 419
           E  M       S  E NG+ EE L
Sbjct: 266 EKDMVSWSALISGYEQNGMYEEAL 289


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/433 (39%), Positives = 253/433 (58%), Gaps = 7/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG   ++ P  S+  Y  ML      N YTFP L+KAC  L   +     +HAH+ KF
Sbjct: 81  MIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQ-IHAHITKF 139

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G D + V+SL+  Y++      A  LFD+  + D V+W +++ GY K G+ + A  LF
Sbjct: 140 GYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLF 199

Query: 121 EKMPERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            KMPE+N A+SW+ +++ Y +    KE L LF +MQ   + P+   L S L+AC+ LGA+
Sbjct: 200 RKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGAL 259

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+HSYA +     + +L   ++DMY+KCG +  AL VF+ +  K    W A+ISG 
Sbjct: 260 EQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGY 319

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G  ++++  F  M   G +P   TF AVLT C++  +V +G ++F  +   Y ++P 
Sbjct: 320 AYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPT 379

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL RAG++ EA +FI +KM      +A +WG+LL AC+I+  IE+G ++  
Sbjct: 380 IEHYGCMVDLLGRAGLLNEANRFI-QKMP--LKPNAVIWGSLLKACQIHKNIELGEKIGE 436

Query: 360 KLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L EM       +V   NI+     WD +A + R+L+ E G+ K PGCS I + G   EF
Sbjct: 437 ILIEMDSNHGGRYVHMANIHAMGKKWD-KAAETRRLMREQGVVKVPGCSAISLEGTTHEF 495

Query: 419 LAGDNRHAQAGEI 431
           LAGD  HA+  EI
Sbjct: 496 LAGDRSHAEIQEI 508



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 22/334 (6%)

Query: 39  ACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR-DV 97
           +C+   P E     +HA ++K G  +DP+ ++  L F         A  +F    DR D 
Sbjct: 16  SCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDT 75

Query: 98  VTWTTMVDGYGKMGDFENARELFEKM----PERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
             W  M+ G       + +  L+ +M       NA ++  ++ A S +S F+E   +   
Sbjct: 76  FLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAH 135

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           + + G   +   + S++ + A  G        H    R   E + +   +V+  Y K G 
Sbjct: 136 ITKFGYGHDIYAVNSLINSYAVTGNFKHA---HLLFDRIQ-EPDAVSWNSVIKGYVKAGE 191

Query: 214 VHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
           +  AL++F  +  K +A +W  MISG    G  K++L+LF  M  S   P   +  + L+
Sbjct: 192 MDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALS 251

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC--VVDLLARAGMVEEAEKFIEEKMGGL 330
            C+    +  G  +    S       +++   C  ++D+ A+ G +EEA    +     +
Sbjct: 252 ACSQLGALEQGKWIH---SYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFK----NM 304

Query: 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
                 VW AL+S    +G   +G     K  EM
Sbjct: 305 KTKSVQVWTALISGYAYHG---LGREAISKFLEM 335



 Score = 40.4 bits (93), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 72/168 (42%), Gaps = 7/168 (4%)

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F G    D   WN MI G++ +    +SL L+ RM+         TF  +L  C++    
Sbjct: 67  FNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAF 126

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
           ++   +  +++  +G    +     +++  A  G  + A    +     +   DA  W +
Sbjct: 127 QETTQIHAHITK-FGYGHDIYAVNSLINSYAVTGNFKHAHLLFDR----IQEPDAVSWNS 181

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
           ++      G++++   ++RK+ E       T ++S   Y +AG + EA
Sbjct: 182 VIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISG--YVQAGMNKEA 227


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 261/445 (58%), Gaps = 3/445 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ +      S   ++DM   G  P   T+  ++ AC         GM VH  VV  
Sbjct: 93  LISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS 152

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V ++L++ Y+    MG+A  +FD    R VV+WT+++ G  ++G  + AR+LF
Sbjct: 153 GVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLF 212

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPER+ VSW+A++  Y   + F+E L +FR+MQ   +  +E  +VSV+TACA LGA+ 
Sbjct: 213 DRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALE 272

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WV  Y  R  ++ +  +  A++DMYSKCG +  AL VF+G+ ++D   W A+I G+A
Sbjct: 273 MGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLA 332

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG  ++++E+F RM++    P E TF+ VLT CTHA +V  G   F +M   Y + P +
Sbjct: 333 VNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNV 392

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C++DLL RAG + EA   I++        ++ +WG LL+ACR++G  E+G  V  +
Sbjct: 393 VHYGCIIDLLGRAGKITEALDTIDQMP---MTPNSTIWGTLLAACRVHGNSEIGELVAER 449

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   +   ++L  NIY +     +  ++R  I E G+KK+PGCS+IE++G++ EF+A
Sbjct: 450 LLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVA 509

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
           GD  H  + EIY  + S +   N V
Sbjct: 510 GDQSHPMSKEIYSKLESIISDLNNV 534



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 116/278 (41%), Gaps = 41/278 (14%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM---FVHAHVVKFGFGEDPFVVSSLLE 74
           Y  ML  G  P+ YTFP L+KA                VHAHVV+ G G +  V SSL+ 
Sbjct: 7   YARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVA 66

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            Y+       ARAL  +      V W  ++ G+ + G                       
Sbjct: 67  AYTAGGDGAAARALVGECDTP--VAWNALISGHNRGG----------------------- 101

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH-LGAITQGLWVHSYAKRYH 193
                    F E    F  M   G  P     VSVL+AC      +  G+ VH       
Sbjct: 102 --------RFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSG 153

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +  ++ +  A+VDMY++C  + SA  VF+G+  +   +W +++SG+A  G   ++ +LFD
Sbjct: 154 VLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFD 213

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           RM +  T     ++ A++     A   R+ L +F  M 
Sbjct: 214 RMPERDT----VSWTAMIDGYVWAARFREALEMFREMQ 247



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 106/239 (44%), Gaps = 16/239 (6%)

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHL----GAITQGLWVHSYAKRYHLEKNVIL 200
           ++ ++ + +M   G +P+     ++L A A      G+      VH++  R  + +N  +
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           A+++V  Y+  G   +A ++   +   D   AWNA+ISG    G   +S   F  M ++G
Sbjct: 61  ASSLVAAYTAGGDGAAARAL---VGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAG 117

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY--GVEPQLEHYACVVDLLARAGMVE 317
             PT  T+V+VL+ C   K  RD L   +    V   GV P L     +VD+ A    + 
Sbjct: 118 AAPTPVTYVSVLSAC--GKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMG 175

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            A K  +    G+       W +LLS     G+++    ++ ++ E     ++  +  Y
Sbjct: 176 SAWKVFD----GMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGY 230


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/452 (38%), Positives = 264/452 (58%), Gaps = 19/452 (4%)

Query: 1   MIRGYMQA-------NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGP-LENFGMF 52
           +IR ++QA           +S+F  + M   G +P+ +TFP L+++     P L + G  
Sbjct: 30  LIRAHVQARAQPTGPTHSPISIF--VRMRFHGVQPDFHTFPFLLQS--FASPSLLHLGRS 85

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA +++FG   DPFV +SL+  YS    +G AR +FD+ P  D+ +W ++++   + G 
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGL 145

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG---MKPNESGLVSV 169
            + AR LF  MPERN +SWS ++  Y R   +KE L+LFR+MQ +G   ++PNE  +  V
Sbjct: 146 VDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGV 205

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKD 228
           L AC  LGA+  G W H+Y  +  +  +V+L TA++DMY+KCG V  A  VF  +  NKD
Sbjct: 206 LAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 265

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             AW+AMISG+AM+G A++ + LF +M+  G +P   TF+AV   C H  +V +G +   
Sbjct: 266 VMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLR 325

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M+  Y + P ++HY C+VDL  RAG ++EA   ++         D  VWGALLS  R++
Sbjct: 326 RMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMP---MEPDVLVWGALLSGSRMH 382

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
           G IE      +KL E+  T+   +VL  N+Y + G   +   VR L+   G+KK PGCS+
Sbjct: 383 GDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSL 442

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           IEV GV+ EF  GD+ H +  +I+ ++   L+
Sbjct: 443 IEVGGVLHEFFVGDDSHPETRQIHMMLEEILE 474


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 184/476 (38%), Positives = 271/476 (56%), Gaps = 73/476 (15%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T+P +IKAC     +  FG+ VH HVVK GF  D ++V+SL+  Y+    +G A+ LF  
Sbjct: 2   TYPFVIKACN-ESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 92  SPDRDVVTWTTMVDGYGKMGD-------------------------------FENARELF 120
             DRDVV+W  M+DGY K G+                                + A+ LF
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEAKRLF 120

Query: 121 EKMPERN-------------------------------AVSWSAIMAAYSRISDFKEVLS 149
           ++MPERN                                VSW++++A Y++     E L+
Sbjct: 121 DEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 180

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LF QM+ VG+KP E+ +VS+L+ACAHLGA+ +GL +H+Y     +E N I+ TA+VDMY+
Sbjct: 181 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 240

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  A  VF  + +KD  AWN +I+G+A++G  K++ +LF  M ++  +P + TFVA
Sbjct: 241 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVA 300

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           +L+ C+HA MV +G  L + MS+ YG+EP++EHY CV+DLLARAG++EEA + I    G 
Sbjct: 301 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELI----GT 356

Query: 330 LG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDME 387
           +    + +  GALL  CRI+G  E+G  V ++L  +       ++L  NIY  A  WD +
Sbjct: 357 MPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWD-D 415

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY---RVIHSFLK 440
           A KVR L+   G+ K PG SVIE+ G+V  F+AGD  H ++ +IY     IH+ LK
Sbjct: 416 ARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLK 471



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 128/298 (42%), Gaps = 36/298 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q   P  ++  +  M  +G +P   T   L+ AC  LG L+  G+ +H ++   
Sbjct: 165 MLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK-GLHLHTYINDN 223

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  V ++L++ Y+   K+  A  +F+    +DV+ W T++ G    G  + A++L 
Sbjct: 224 RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQL- 282

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                         F++M+E  ++PN+   V++L+AC+H G + 
Sbjct: 283 ------------------------------FKEMKEASVEPNDITFVAMLSACSHAGMVD 312

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G   +   +  Y +E  V     V+D+ ++ G +  A+ +   +    +  A  A++ G
Sbjct: 313 EGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGG 372

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
             ++G+ +    +  R++    QP  +    +L+    A    D      N+  V G+
Sbjct: 373 CRIHGNFELGEMVGKRLI--NLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 428


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 178/455 (39%), Positives = 277/455 (60%), Gaps = 26/455 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHV 57
           +IR   ++N P  ++  +++M+ D   EPN +TFP + KAC   G  E    G  VH   
Sbjct: 82  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKAC---GRAERLREGRQVHGLA 138

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALF---------------DKSPDRDVVTWTT 102
           VKFG   D FVVS+++  Y     M  A  LF                +  D DVV W  
Sbjct: 139 VKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNV 198

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           M+DGY ++G+ E AR LF++MP+R+ VSW+ ++A Y++   FKE + +FR+MQ   + PN
Sbjct: 199 MIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPN 258

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
              LVSVL A + LGA+  G WVH YA R ++  + +L +A++DMY+KCG +  AL VFE
Sbjct: 259 YVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFE 318

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
           G+  ++   W+ +I+G+AM+G AK +L+ F+ M ++G  P++ T++ +L+ C+HA +V +
Sbjct: 319 GLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNE 378

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G   F++M  V G+EP++EHY C+VDLL RAG++EE+E+ I          D  +W ALL
Sbjct: 379 GRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMP---IKPDDVIWKALL 435

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMK 401
            AC+++G +E+G RV   L E+   D  ++V   NIY   G W+  A KVR ++ E  ++
Sbjct: 436 GACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVA-KVRLMMKEMDVR 494

Query: 402 KKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           K PGCS IE++GV+ EFL  D+ H ++ +I+ ++ 
Sbjct: 495 KDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQ 529



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 138/347 (39%), Gaps = 85/347 (24%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K     DP   + LL F ++                                 D
Sbjct: 30  LHAQMIKTAQIRDPLAAAELLRFSAV-----------------------------SDHRD 60

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLT 171
            + AR++F  M   N  S++ ++ A S  +D  + L +F +M ++  ++PN     SV  
Sbjct: 61  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 120

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC-------------------- 211
           AC     + +G  VH  A ++ L+ +  + + VV MY  C                    
Sbjct: 121 ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 180

Query: 212 --------------------------GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
                                     G +  A ++F+ +  +   +WN MI+G A +G  
Sbjct: 181 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 240

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHY 303
           K+++E+F  M  +   P   T V+VL   +    +  G  ++L+   + + GV+  L   
Sbjct: 241 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNI-GVDDVLG-- 297

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           + ++D+ A+ G +E+A +  E    GL   +   W  +++   ++G+
Sbjct: 298 SALIDMYAKCGSIEKALQVFE----GLPKRNVVTWSTIIAGLAMHGR 340


>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Glycine max]
          Length = 534

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 164/436 (37%), Positives = 262/436 (60%), Gaps = 4/436 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG+ +++ P L++  ++DML     P   T+P + KA   LG   + G  +H  VVK 
Sbjct: 95  IIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKAYAQLGAGYD-GAQLHGRVVKL 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  +D F+ ++++  Y+    +  AR +FD+  D DVV   +M+ G  K G+ + +R LF
Sbjct: 154 GLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLF 213

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP R  V+W+++++ Y R     E L LFR+MQ   ++P+E  +VS+L+ACAHLGA+ 
Sbjct: 214 DNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALK 273

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH Y KR H E NVI+ TA++DMY KCG +  A+ VFE    +    WN++I G+A
Sbjct: 274 HGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLA 333

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG  +K++E F ++  S  +P   +F+ VLT C +   V    + F  M   Y +EP +
Sbjct: 334 LNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIGAVGKARDYFSLMMNKYEIEPSI 393

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+V++L +A ++EEAE+ I+   G     D  +WG+LLS+CR +G +E+  R  ++
Sbjct: 394 KHYTCMVEVLGQAALLEEAEQLIK---GMPLKADFIIWGSLLSSCRKHGNVEIAKRAAQR 450

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+  +D S ++L  N+   +    EA + R L+ E   +K+PGCS IE+ G V EFLA
Sbjct: 451 VCELNPSDASGYLLMSNVQAASNQFEEAMEQRILMRERLAEKEPGCSSIELYGEVHEFLA 510

Query: 421 GDNRHAQAGEIYRVIH 436
           G   H +A EIY +++
Sbjct: 511 GGRLHPKAREIYYLLN 526



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 101/248 (40%), Gaps = 39/248 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH++K G        S +L F +                                 GD
Sbjct: 44  IHAHIIKTGLAHHTVAASRVLTFCA------------------------------SSSGD 73

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  LF  +P  N   W+ I+  +SR S     +SLF  M    + P      SV  A
Sbjct: 74  INYAYLLFTTIPSPNLYCWNTIIRGFSRSSTPHLAISLFVDMLCSSVLPQRLTYPSVFKA 133

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
            A LGA   G  +H    +  LEK+  +   ++ MY+  G +  A  VF+ + + D  A 
Sbjct: 134 YAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVAC 193

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTET--TFVAVLTTCTHAKMVRDGLNLFENM 290
           N+MI G+A  G+  KS  LFD M      PT T  T+ ++++     K + + L LF  M
Sbjct: 194 NSMIMGLAKCGEVDKSRRLFDNM------PTRTRVTWNSMISGYVRNKRLMEALELFRKM 247

Query: 291 SAVYGVEP 298
                VEP
Sbjct: 248 QG-ERVEP 254


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/400 (43%), Positives = 241/400 (60%), Gaps = 11/400 (2%)

Query: 52  FVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--PDRDVVTWTTMVDGYGK 109
             H   +K G    P V + LL+ Y  +  +  AR +FD S     D  +W TMV GYGK
Sbjct: 137 LAHGQALKHGALAHPVVTNCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGK 196

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
            GD E ARE+F +MPER  VSWSA++ A  R  +F E L +F QM   G +P+   L SV
Sbjct: 197 CGDLEAAREVFVRMPERGLVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSV 256

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGISN 226
           L ACAHLGA+ +G WVH + K   L +   NV+L TA+VDMY KCG +  A  VF+G+ +
Sbjct: 257 LKACAHLGALERGRWVHRFLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQS 316

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           +D   WNAMI G+AMNG  K++LELF RM+  G  P E+TFV VL  CTH   V +G  +
Sbjct: 317 QDVVLWNAMIGGLAMNGHGKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEI 376

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSAC 345
           F +M   +G+EP+ EHY C+ DLL RAG++EEAE   ++  M       A+ WGAL+S+C
Sbjct: 377 FRSMCD-HGIEPRREHYGCLADLLGRAGLLEEAEAVLLDMPM----EPHASQWGALMSSC 431

Query: 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405
            ++  + VG RV +KL E+   D   +V+ +N+Y   G   +A  +RK++ E G KK+ G
Sbjct: 432 LMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETG 491

Query: 406 CSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
            S IE NG+V EF +GD RH Q  +IY ++    +   L+
Sbjct: 492 LSFIEWNGLVHEFRSGDTRHPQTRQIYALLEDMEQRLQLI 531



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 36/228 (15%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP---FVVSSLLEFYS 77
           M+  GF P+      ++KAC  LG LE  G +VH  +   G G  P    + ++L++ Y 
Sbjct: 241 MMGNGFRPDAVVLSSVLKACAHLGALER-GRWVHRFLKAEGLGRSPDNVMLETALVDMYC 299

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               M  A  +FD    +DVV W  M+ G    G  + A                     
Sbjct: 300 KCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRA--------------------- 338

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                     L LFR+M ++G  PNES  V VL AC H G + +G  +      + +E  
Sbjct: 339 ----------LELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPR 388

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGD 244
                 + D+  + G +  A +V   +     A  W A++S   M+ +
Sbjct: 389 REHYGCLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNN 436


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 261/441 (59%), Gaps = 9/441 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR + +++ P+ ++  ++DML    +P   T+P + KA   LG   ++G  +H  VVK 
Sbjct: 98  IIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGH-AHYGAQLHGRVVKL 156

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP----DRDVVTWTTMVDGYGKMGDFENA 116
           G   D F+ ++++  Y+    M  AR +FD       D DVV   +M+ GY K G+ + +
Sbjct: 157 GLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDES 216

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R LF+ M  R +VSW+++++ Y R     E L LF +MQ  G + +E  +VS+L ACAHL
Sbjct: 217 RNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHL 276

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G WVH Y KR H E NVI+ TA++DMY KCG V +A+ VFE    +    WN++I
Sbjct: 277 GALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSII 336

Query: 237 SGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
            G+AMNG  +++ E F ++  S   +P   +F+ VLT C H   +    + FE M   Y 
Sbjct: 337 IGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYE 396

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +EP ++HY C+VD+L +AG++EEAE+ I+   G     DA +WG+LLS+CR +  +++  
Sbjct: 397 IEPSIKHYTCIVDVLGQAGLLEEAEELIK---GMPLKPDAIIWGSLLSSCRKHRNVQIAR 453

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           R  +++ E+  +D S +VL  N++  +    EA + R L+ E   +K+PGCS IE+ G V
Sbjct: 454 RAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIELYGEV 513

Query: 416 EEFLAGDNRHAQAGEIYRVIH 436
            EF+AG   H +  EIY +++
Sbjct: 514 HEFIAGGRLHPKTQEIYHLLN 534



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 127/308 (41%), Gaps = 68/308 (22%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL-FDKSPDRDVVTWTTMVDGYGKMG 111
           ++ H++K G   +P               + + RAL F  SP                 G
Sbjct: 47  IYPHIIKTGLTLNP---------------IASTRALTFCASPS----------------G 75

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           +   A +LF +MP  N  SW+ I+ A+SR S  +  +SLF  M    ++P      SV  
Sbjct: 76  NINYAYKLFVRMPNPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFK 135

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM------------------------ 207
           A A LG    G  +H    +  L+ +  +   ++ M                        
Sbjct: 136 AYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLELYDH 195

Query: 208 -----------YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
                      Y+KCG +  + ++F+ +  + + +WN+MISG   NG   ++LELF++M 
Sbjct: 196 DVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQ 255

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G + +E T V++L  C H   ++ G  + + +   +  E  +     ++D+  + G V
Sbjct: 256 VEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNH-FELNVIVVTAIIDMYCKCGSV 314

Query: 317 EEAEKFIE 324
           E A +  E
Sbjct: 315 ENAVEVFE 322


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 164/444 (36%), Positives = 271/444 (61%), Gaps = 12/444 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY +    K S   +++M   G  PN+ T   ++ AC  L  LE        H+ K+
Sbjct: 179 MLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEG-----GKHIYKY 233

Query: 61  ---GFGEDPFVVSS-LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
              G  E   ++ + L++ ++   +M  A+++FD   +RDV++WT++V G+  +G  + A
Sbjct: 234 INGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLA 293

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R+ F+++PER+ VSW+A++  Y R++ F E L+LFR+MQ   +KP+E  +VS+LTACAHL
Sbjct: 294 RKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHL 353

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G WV +Y  +  ++ +  +  A++DMY KCG+V  A  VF+ + +KD   W AMI
Sbjct: 354 GALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMI 413

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G+A+NG  +++L +F  M+++   P E T++ VL  CTHA MV  G + F +M+  +G+
Sbjct: 414 VGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGI 473

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P + HY C+VDLL RAG +EEA + I   +      ++ VWG+LL ACR++  +++   
Sbjct: 474 KPNVTHYGCMVDLLGRAGRLEEAHEVI---VNMPVKPNSIVWGSLLGACRVHKNVQLAEM 530

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             +++ E+   + + +VL  NIY          +VRKL+ E G+KK PGCS++E+NG V 
Sbjct: 531 AAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVY 590

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLK 440
           EF+AGD  H Q+ EIY  + + ++
Sbjct: 591 EFVAGDQSHPQSKEIYAKLENMMQ 614



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 181/406 (44%), Gaps = 84/406 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY + N P+  V  YL ML    +P+ +TFP L+K       L+ +G  +  H VK 
Sbjct: 78  MIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQ-YGKVLLNHAVKH 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + FV  + +  +SL   +  AR +FD                   MGD   A E+ 
Sbjct: 137 GFDSNLFVQKAFIHMFSLCRLVDLARKVFD-------------------MGD---AWEV- 173

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                   V+W+ +++ Y+R+  FK+   LF +M++ G+ PN   LV +L+AC+ L  + 
Sbjct: 174 --------VTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLE 225

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  ++ Y     +E+N+IL   ++DM++ CG +  A SVF+ + N+D  +W ++++G A
Sbjct: 226 GGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFA 285

Query: 241 MNGD---AKK----------------------------SLELFDRMVKSGTQPTETTFVA 269
             G    A+K                            +L LF  M  S  +P E T V+
Sbjct: 286 NIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVS 345

Query: 270 VLTTCTHAKMVRDG--------LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           +LT C H   +  G         N  +N + V            ++D+  + G V +A+K
Sbjct: 346 ILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNA---------LIDMYFKCGNVGKAKK 396

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
             +E    +   D   W A++    I G  E    ++  + E  IT
Sbjct: 397 VFKE----MHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASIT 438



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 140/324 (43%), Gaps = 34/324 (10%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H+H +K G   DP     ++ F    H+ G  + ++                       
Sbjct: 26  IHSHTIKMGLSSDPLFQKRVIAF-CCAHESG--KMIY----------------------- 59

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              AR++F+ +P+     W+ ++  YSRI+  +  +S++  M    +KP+      +L  
Sbjct: 60  ---ARQVFDAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKG 116

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
                A+  G  + ++A ++  + N+ +  A + M+S C  V  A  VF+     +   W
Sbjct: 117 FTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTW 176

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N M+SG       KKS  LF  M K G  P   T V +L+ C+  K +  G ++++ ++ 
Sbjct: 177 NIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING 236

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
              VE  L     ++D+ A  G ++EA+   +     +   D   W ++++     G+I+
Sbjct: 237 GI-VERNLILENVLIDMFAACGEMDEAQSVFD----NMKNRDVISWTSIVTGFANIGQID 291

Query: 353 VGNRVWRKLAEMGITDFSTHVLSY 376
           +  + + ++ E     ++  +  Y
Sbjct: 292 LARKYFDQIPERDYVSWTAMIDGY 315


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 164/440 (37%), Positives = 263/440 (59%), Gaps = 6/440 (1%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I GY++   P   L +F  +   D    P+  T    +  C  +  LE  G  +H  V 
Sbjct: 197 LIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLE-LGRRLHGFVD 255

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
             G      ++++L++ Y     +  A+++F++   R VV+WTTM+ G+ K G  ++AR+
Sbjct: 256 SDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARK 315

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F++MPER+   W+A+M  Y +    KE LSLF +MQE  + P+E  +V++LTAC+ LGA
Sbjct: 316 VFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGA 375

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G+WVH Y +++ L  +V L T+++DMY+KCG++  A+ +F+ I  K+A  W AMI G
Sbjct: 376 LEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICG 435

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G A +++E F  M++ G +P E TF+ VL+ C HA +V++G   F  M   Y +E 
Sbjct: 436 LANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLER 495

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +++HY+C++DLL RAG ++EAE+ +          DA VWGA+  ACR+ G I +G +  
Sbjct: 496 KMKHYSCMIDLLGRAGHLDEAEQLVNTMP---MEPDAVVWGAIFFACRMQGNISLGEKAA 552

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            KL E+  +D   +VL  N+Y EA    +A+KVR ++   G++K PGCS IE+NGVV EF
Sbjct: 553 MKLVEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEF 612

Query: 419 LAGDNRHAQAGEIYRVIHSF 438
           +  D  H  +  IY  +H  
Sbjct: 613 IVKDKSHMDSHAIYDCLHEI 632



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 160/373 (42%), Gaps = 72/373 (19%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            P++ TFP L+KAC  L     +G    AHV++ G   D FVV++   F S+   M  AR
Sbjct: 122 RPDHLTFPFLLKACARLREW-GYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDAR 180

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD+SP RD+V+W T++ GY + G+   A ELF +M   +AV                 
Sbjct: 181 RLFDRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAV----------------- 223

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
                       ++P+E  +++ ++ C  +  +  G  +H +     +   V L  A++D
Sbjct: 224 ------------VRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMD 271

Query: 207 MYSKCGHVHSALSVFEGISN-------------------------------KDAGAWNAM 235
           MY KCG +  A SVFE I +                               +D   WNA+
Sbjct: 272 MYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNAL 331

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL---NLFENMSA 292
           ++G       K++L LF  M ++   P E T V +LT C+    +  G+      E    
Sbjct: 332 MTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHRL 391

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           V+ V         ++D+ A+ G +E+A    +E    +   +A  W A++     +G   
Sbjct: 392 VFSVALG----TSLIDMYAKCGNIEKAIHIFKE----IPEKNALTWTAMICGLANHGHAN 443

Query: 353 VGNRVWRKLAEMG 365
                +R + E+G
Sbjct: 444 EAIEHFRTMIELG 456



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 15/224 (6%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISD--------FKEVLSLFRQMQEVGM-KPNE 163
             +A  L   +P   A +++A + A S   D         +  L L+R +   G  +P+ 
Sbjct: 69  LRHALALLSSLP---ASAYNAAIRALSLSDDGDRHGHGVVRRCLPLYRALLRSGTARPDH 125

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
                +L ACA L     G    ++  R  L+ +V +  A     S  G +  A  +F+ 
Sbjct: 126 LTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLFDR 185

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG--TQPTETTFVAVLTTCTHAKMVR 281
              +D  +WN +I G    G+  ++LELF RMV      +P E T +A ++ C   + + 
Sbjct: 186 SPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLE 245

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            G  L   + +  GV   +     ++D+  + G +E A+   E 
Sbjct: 246 LGRRLHGFVDS-DGVSCTVRLMNALMDMYIKCGSLEMAKSVFER 288


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 165/448 (36%), Positives = 277/448 (61%), Gaps = 21/448 (4%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
           +IRG+ +++  K  +++  + +M+   F EPN +TFP ++KAC   G ++  G  +H   
Sbjct: 96  IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE-GKQIHGLA 154

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------------PDRDVVTWTTM 103
           +K+GFG D FV+S+L+  Y +   M  AR LF K+               D ++V W  M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214

Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
           +DGY ++GD + AR LF+KM +R+ VSW+ +++ YS    FK+ + +FR+M++  ++PN 
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
             LVSVL A + LG++  G W+H YA+   +  + +L +A++DMYSKCG +  A+ VFE 
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +  ++   W+AMI+G A++G A  +++ F +M ++G +P++  ++ +LT C+H  +V +G
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
              F  M +V G+EP++EHY C+VDLL R+G+++EAE+FI   +      D  +W ALL 
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI---LNMPIKPDDVIWKALLG 451

Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403
           ACR+ G +E+G RV   L +M   D   +V   N+Y   G   E +++R  + E  ++K 
Sbjct: 452 ACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511

Query: 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           PGCS+I+++GV+ EF+  D+ H +A EI
Sbjct: 512 PGCSLIDIDGVLHEFVVEDDSHPKAKEI 539



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 135/305 (44%), Gaps = 57/305 (18%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL---FRQMQEVGMKPNESGLVS 168
           D + A ++F +MP+RN  SW+ I+  +S   + K ++++   +  M +  ++PN     S
Sbjct: 74  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133

Query: 169 VLTACAHLGAITQGLWVHSYAKRYH--------------------------------LEK 196
           VL ACA  G I +G  +H  A +Y                                 +EK
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193

Query: 197 NVILAT-------------AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           ++++ T              ++D Y + G   +A  +F+ +  +   +WN MISG ++NG
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLE 301
             K ++E+F  M K   +P   T V+VL   +    +  G  L+L+   S   G+     
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDS---GIRIDDV 310

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
             + ++D+ ++ G++E+A    E     L   +   W A+++   I+G+       + K+
Sbjct: 311 LGSALIDMYSKCGIIEKAIHVFER----LPRENVITWSAMINGFAIHGQAGDAIDCFCKM 366

Query: 362 AEMGI 366
            + G+
Sbjct: 367 RQAGV 371


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 172/435 (39%), Positives = 259/435 (59%), Gaps = 9/435 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDML---DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
           MIR Y +++ P  S   Y ++L   +    P+NYTF  L++ C  L      G+ VH  V
Sbjct: 80  MIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQA-HVTGLCVHGAV 138

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +K GF  DP V + L+  Y+ +  + +   +FD + + D+VT T M++   K GD + AR
Sbjct: 139 IKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFAR 198

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ++F++MPER+ V+W+A++A Y++    +E L +F  MQ  G+K NE  +V VL+AC HL 
Sbjct: 199 KMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQ 258

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G WVH+Y +RY +   V L TA+VDMY+KCG+V  A+ VF G+  ++   W++ I 
Sbjct: 259 VLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIG 318

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+AMNG  ++SL+LF+ M + G QP   TF++VL  C+   +V +G   F++M  VYG+ 
Sbjct: 319 GLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIG 378

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           PQLEHY  +VD+  RAG ++EA  FI         G    W ALL ACR+Y   E+G   
Sbjct: 379 PQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVG---AWSALLHACRMYKNKELGEIA 435

Query: 358 WRKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            RK+ E+   +   +VL  NIY +   W+   + +R+ +   G+KK PGCSVIEV+G V 
Sbjct: 436 QRKIVELEDKNDGAYVLLSNIYADYKNWE-SVSSLRQTMKAKGVKKLPGCSVIEVDGEVH 494

Query: 417 EFLAGDNRHAQAGEI 431
           EF+ GD  H +  EI
Sbjct: 495 EFIVGDKSHPRYDEI 509


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 161/432 (37%), Positives = 259/432 (59%), Gaps = 4/432 (0%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           ++   + + P  ++  +  +      P+ +T   +++AC+ L  L N G  +H  V K G
Sbjct: 100 LKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSN-GRILHGVVEKVG 158

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  + ++ + ++  Y+   +MG AR LF+K P RDVVTW  M+    K GD E A +LF 
Sbjct: 159 FRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFS 218

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MPERN  SW++++A Y +    KE + LF +M+E G+K NE  +V+VL ACA LGA+  
Sbjct: 219 RMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDL 278

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G+ +H Y+ R+  ++NV ++  ++DMY KCG +  A  VFE +  +   +W+AMI G+AM
Sbjct: 279 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 338

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G A+++L LF  M + G +P   TF+ +L  C+H  ++ +G   F +M+  YG+ PQ+E
Sbjct: 339 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIE 398

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+VDLL+RAG++ EA +FI   +      +  VWGALL ACR++  +E+     + L
Sbjct: 399 HYGCMVDLLSRAGLLHEAHEFI---LNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL 455

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            E+   +   +V+  NIY EAG   +  +VRK + +  +KK PG S I V+GVV EF+AG
Sbjct: 456 LELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAG 515

Query: 422 DNRHAQAGEIYR 433
           +  H    +I++
Sbjct: 516 EESHPDTEQIFQ 527



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 130/287 (45%), Gaps = 38/287 (13%)

Query: 113 FENARELFEKMPERNAVS--WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           F  A+++FE + ++   +  W++ + A +      + + LF ++++  + P+     SVL
Sbjct: 76  FHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVL 135

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC +L  ++ G  +H   ++     N+ L   +V +Y+ CG +  A  +FE +  +D  
Sbjct: 136 RACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVV 195

Query: 231 AWNAMISGVAMNGD-------------------------------AKKSLELFDRMVKSG 259
            WN MI+ +   GD                               AK+++ LF +M ++G
Sbjct: 196 TWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG 255

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +  E T VAVL  C     +  G+ + E  S  +G +  +     ++D+  + G +EEA
Sbjct: 256 VKCNEVTVVAVLAACADLGALDLGMRIHE-YSNRHGFKRNVRISNTLIDMYVKCGCLEEA 314

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            K  EE    +       W A++    ++G+ E   R++  ++++GI
Sbjct: 315 CKVFEE----MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI 357



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 36/275 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q    K ++  +  M + G + N  T   ++ AC  LG L + GM +H +  + 
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL-DLGMRIHEYSNRH 289

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  + ++L++ Y     +  A  +F++  +R VV+W+ M+ G    G  E      
Sbjct: 290 GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAE------ 343

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E L LF  M +VG++PN    + +L AC+H+G I+
Sbjct: 344 -------------------------EALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLIS 378

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMISG 238
           +G  +  S  + Y +   +     +VD+ S+ G +H A      +  K  G  W A++  
Sbjct: 379 EGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA 438

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
             ++ + + + E    +++    P    +  VL+ 
Sbjct: 439 CRVHKNVEMAEEAIKHLLE--LDPLNDGYYVVLSN 471


>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
 gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
          Length = 377

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 145/354 (40%), Positives = 233/354 (65%)

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +  AR +FD+ P ++V+ WT+MV GY   G+ + ARELFE+ P ++ V W+A++  Y + 
Sbjct: 8   LSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQF 67

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
           + F E ++LF++MQ   +KP++  LV++LT CA +GA+ QG W+H Y     +  + ++ 
Sbjct: 68  NHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVG 127

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
           T++++MYSKCG +  AL +F G+  KD   W ++I G+AMNG   K+LELF +M +    
Sbjct: 128 TSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFSKMKQVEAI 187

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E TF+ VL+ C+H  +V +G   F +M+++Y +EP+LEHY C++DLL RAG ++EAE+
Sbjct: 188 PDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEE 247

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            I++ +         ++G+LLSACRIY  +++G RV  +L ++   D S H L  NIY  
Sbjct: 248 LIKKIVNANNEIIVPLYGSLLSACRIYKNVQMGERVAEQLVKIESRDSSVHTLLANIYAS 307

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           AG  ++ N+VR+ + + G+KK PGCS IEV+G+V EFL G+   ++  EIY ++
Sbjct: 308 AGRWVDVNRVRREMKDLGVKKVPGCSSIEVDGIVHEFLVGNPSCSEMREIYSML 361



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 100/229 (43%), Gaps = 33/229 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q N    +V  + +M     +P+ +    L+  C  +G LE  G ++H ++ + 
Sbjct: 60  MINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQ-GTWIHGYIDEK 118

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V +SL+E YS    +  A  +F    ++D  TWT+++ G    G    A ELF
Sbjct: 119 GIPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELF 178

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM +  A+                               P+E   + VL+AC+H G + 
Sbjct: 179 SKMKQVEAI-------------------------------PDEVTFIGVLSACSHGGLVE 207

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +G  + +S    Y++E  +     ++D+  + G +  A  + + I N +
Sbjct: 208 EGREFFNSMTSIYNIEPKLEHYGCLIDLLGRAGQLDEAEELIKKIVNAN 256



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 37/189 (19%), Positives = 73/189 (38%), Gaps = 36/189 (19%)

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR------------ 254
           MY KCG +  A  +F+ + +K+   W +M+SG    G+  K+ ELF+R            
Sbjct: 1   MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60

Query: 255 -------------------MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
                              M     +P +   VA+LT C     +  G  +   +    G
Sbjct: 61  INGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDE-KG 119

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +         ++++ ++ G +E+A +       GL   D   W +++    + GK     
Sbjct: 120 IPVDAVVGTSLIEMYSKCGCIEKALRI----FCGLREKDTATWTSIICGLAMNGKTSKAL 175

Query: 356 RVWRKLAEM 364
            ++ K+ ++
Sbjct: 176 ELFSKMKQV 184


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 161/432 (37%), Positives = 259/432 (59%), Gaps = 4/432 (0%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           ++   + + P  ++  +  +      P+ +T   +++AC+ L  L N G  +H  V K G
Sbjct: 100 LKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSN-GRILHGVVEKVG 158

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  + ++ + ++  Y+   +MG AR LF+K P RDVVTW  M+    K GD E A +LF 
Sbjct: 159 FRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFS 218

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MPERN  SW++++A Y +    KE + LF +M+E G+K NE  +V+VL ACA LGA+  
Sbjct: 219 RMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDL 278

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G+ +H Y+ R+  ++NV ++  ++DMY KCG +  A  VFE +  +   +W+AMI G+AM
Sbjct: 279 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 338

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G A+++L LF  M + G +P   TF+ +L  C+H  ++ +G   F +M+  YG+ PQ+E
Sbjct: 339 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIE 398

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+VDLL+RAG++ EA +FI   +      +  VWGALL ACR++  +E+     + L
Sbjct: 399 HYGCMVDLLSRAGLLHEAHEFI---LNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL 455

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            E+   +   +V+  NIY EAG   +  +VRK + +  +KK PG S I V+GVV EF+AG
Sbjct: 456 LELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAG 515

Query: 422 DNRHAQAGEIYR 433
           +  H    +I++
Sbjct: 516 EESHPDTEQIFQ 527



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 130/287 (45%), Gaps = 38/287 (13%)

Query: 113 FENARELFEKMPERNAVS--WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           F  A+++F+ + ++   +  W++ + A +      + + LF ++++  + P+     SVL
Sbjct: 76  FHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVL 135

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC +L  ++ G  +H   ++     N+ L   +V +Y+ CG +  A  +FE +  +D  
Sbjct: 136 RACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVV 195

Query: 231 AWNAMISGVAMNGD-------------------------------AKKSLELFDRMVKSG 259
            WN MI+ +   GD                               AK+++ LF +M ++G
Sbjct: 196 TWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAG 255

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +  E T VAVL  C     +  G+ + E  S  +G +  +     ++D+  + G +EEA
Sbjct: 256 VKCNEVTVVAVLAACADLGALDLGMRIHE-YSNRHGFKRNVRISNTLIDMYVKCGCLEEA 314

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            K  EE    +       W A++    ++G+ E   R++  ++++GI
Sbjct: 315 CKVFEE----MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGI 357



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 36/275 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q    K ++  +  M + G + N  T   ++ AC  LG L + GM +H +  + 
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGAL-DLGMRIHEYSNRH 289

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  + ++L++ Y     +  A  +F++  +R VV+W+ M+ G    G  E      
Sbjct: 290 GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAE------ 343

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E L LF  M +VG++PN    + +L AC+H+G I+
Sbjct: 344 -------------------------EALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLIS 378

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMISG 238
           +G  +  S  + Y +   +     +VD+ S+ G +H A      +  K  G  W A++  
Sbjct: 379 EGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGA 438

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
             ++ + + + E    +++    P    +  VL+ 
Sbjct: 439 CRVHKNVEMAEEAIKHLLE--LDPLNDGYYVVLSN 471


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  323 bits (829), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 167/391 (42%), Positives = 238/391 (60%), Gaps = 3/391 (0%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G  VH  VVK G      + ++L+  YS   ++ TA+ LF +S   D ++W +M+ GY K
Sbjct: 308 GKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVK 367

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
            G+ E AR LF+ MP+++ VSWSA+++ Y++   F E L LF++MQ  G KP+E+ LVSV
Sbjct: 368 CGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSV 427

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           ++AC HL A+ QG W+H+Y ++  L+ N+IL T +++MY K G V  AL VF+G+  K  
Sbjct: 428 ISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGV 487

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
             WNA+I G+AMNG   KSL+ F  M + G  P E TFVAVL  C H  +V +G   F +
Sbjct: 488 STWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNS 547

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   + + P ++HY C+VDLL RAGM++EAE+ IE         D + WGALL AC+ YG
Sbjct: 548 MIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMP---MAPDVSTWGALLGACKKYG 604

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
             E G R+ RKL E+       +VL  NIY   G  ++  +VR ++ + G+ K PGCS+I
Sbjct: 605 DNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMI 664

Query: 410 EVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           E +G V EFLAGD  H Q   I  ++    K
Sbjct: 665 EAHGRVHEFLAGDKTHPQNEHIEHMLDEMAK 695



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 204/430 (47%), Gaps = 70/430 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHVVK 59
           M++GYMQ N P  +++ Y  ML+     +NYT+P L ++C I   L  F G  +  HV+K
Sbjct: 97  MMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSI--RLAEFDGKCIQDHVLK 154

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  D ++ ++L+  Y++   +  AR +FD S   D+V+W +M+ GY  +G+ E A+++
Sbjct: 155 VGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDV 214

Query: 120 FEKMPERNA-------------------------------VSWSAIMAAYSRISDFKEVL 148
           +++MPERN                                VSWSA+++ Y +   ++E L
Sbjct: 215 YDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEAL 274

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
            LF++M   G+  +E  ++SVL+AC+ L  +  G  VH    +  +E  V L  A++ MY
Sbjct: 275 ILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMY 334

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS---------- 258
           S C  V +A  +F      D  +WN+MISG    G+ +K+  LFD M             
Sbjct: 335 SSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMIS 394

Query: 259 ---------------------GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
                                GT+P ET  V+V++ CTH   +  G  +   +    G++
Sbjct: 395 GYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRK-NGLK 453

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             +     ++++  + G VE+A     E   GL     + W AL+    + G ++   + 
Sbjct: 454 INIILGTTLINMYMKLGCVEDA----LEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKT 509

Query: 358 WRKLAEMGIT 367
           + ++ E G+T
Sbjct: 510 FSEMKEHGVT 519



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/280 (22%), Positives = 122/280 (43%), Gaps = 36/280 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q +    ++  + +M   G +P+      +I AC  L  L+  G ++HA++ K 
Sbjct: 392 MISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQ-GKWIHAYIRKN 450

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                  +++  TT+++ Y K+G  E+A E+F
Sbjct: 451 GL-------------------------------KINIILGTTLINMYMKLGCVEDALEVF 479

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + + E+   +W+A++   +      + L  F +M+E G+ PNE   V+VL AC H+G + 
Sbjct: 480 KGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVD 539

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G    +S  + + +  N+     +VD+  + G +  A  + E +    D   W A++  
Sbjct: 540 EGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGA 599

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278
               GD +    +  ++V+    P    F  +L+    +K
Sbjct: 600 CKKYGDNETGERIGRKLVE--LHPDHDGFNVLLSNIYASK 637



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 65/356 (18%), Positives = 143/356 (40%), Gaps = 43/356 (12%)

Query: 19  LDMLDMGFEPNNYTFPPLIKACVI---LGPLENFGMF--VHAHVVKFGFGEDPFVVSSLL 73
           L+ L   F+   +T  P +   ++   L   +N   F  + + ++  GF +D F  S LL
Sbjct: 6   LNYLSKPFKIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLL 65

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           +F + +  +                             +   + ++F  +   N    + 
Sbjct: 66  KFSTELPFI-----------------------------NINQSYQIFSHIENPNGFICNT 96

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           +M  Y + +   + + +++ M E  +  +      +  +C+   A   G  +  +  +  
Sbjct: 97  MMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVG 156

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            + +V +   +++MY+ CG++  A  VF+G S  D  +WN+M++G  + G+ +++ +++D
Sbjct: 157 FDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYD 216

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           RM +     + +  V           V +   LF  M      +  L  ++ ++    + 
Sbjct: 217 RMPERNVIASNSMIVLF----GKKGNVEEACKLFNEMK-----QKDLVSWSALISCYEQN 267

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
            M EEA    +E        D  V  ++LSAC     +  G  V   + ++GI  +
Sbjct: 268 EMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETY 323


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  323 bits (829), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 165/432 (38%), Positives = 262/432 (60%), Gaps = 4/432 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY ++     S+  + +M  M   P++ T   ++ AC  L  L N G  VH +V   
Sbjct: 191 MISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDL-NVGKRVHRYVKDL 249

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  + ++L++ Y+    M TA  +FD    RDV++WT +V G+  +G    AR  F
Sbjct: 250 KIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYF 309

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMPER+ VSW+A++  Y +++ FKEVLSLFR+MQ   +KP+E  +VS+LTACAHLGA+ 
Sbjct: 310 DKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALE 369

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+ +Y  +  ++ +  +  A++DMY  CG+V  A+ +F  + ++D  +W A+I G+A
Sbjct: 370 LGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLA 429

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG  +++L++F +M+K+   P E T + VL  CTH+ MV  G   F  M+  +G+EP +
Sbjct: 430 INGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNV 489

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C+VDLL RAG ++EA + I+         ++ VWG+LL ACR++   E+     ++
Sbjct: 490 AHYGCMVDLLGRAGHLKEAHEVIKNMP---VKPNSIVWGSLLGACRVHRDEEMAEMAAQQ 546

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   + + +VL  NIY       + ++VRKL+ + G+KK PGCS+IE+NG V EF+A
Sbjct: 547 ILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVA 606

Query: 421 GDNRHAQAGEIY 432
           GD  H Q+ EIY
Sbjct: 607 GDQVHPQSKEIY 618



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 142/307 (46%), Gaps = 63/307 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY +   P  +V  Y +ML+ G  P+ YT+P L+K           G  +H H+VK 
Sbjct: 90  MIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKR-FTRDTAVKCGRELHDHIVKL 148

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + FV ++L+  YSL  ++  AR +FD+S   DVVTW  M+ GY +   F+ + +LF
Sbjct: 149 GFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLF 208

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +                               +M+ + + P+   LVSVL+AC+ L  + 
Sbjct: 209 D-------------------------------EMERMRVLPSSITLVSVLSACSKLKDLN 237

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y K   +E   +L  A++DMY+ CG + +AL +F+ + ++D  +W A+++G  
Sbjct: 238 VGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFT 297

Query: 241 MNGDA-------------------------------KKSLELFDRMVKSGTQPTETTFVA 269
             G                                 K+ L LF  M  +  +P E T V+
Sbjct: 298 NLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 357

Query: 270 VLTTCTH 276
           +LT C H
Sbjct: 358 ILTACAH 364



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 150/359 (41%), Gaps = 43/359 (11%)

Query: 28  PNNYTFPPL--IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
           P+    PPL  IK C  +  L+     +H+  +  G   +P V + ++ F          
Sbjct: 15  PSLPQTPPLSLIKTCKSMAQLKQ----IHSQTICTGLISNPIVPAQIIAFCC-------- 62

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                                  ++GD E AR +F+ MP  N   W+ ++  YSR+    
Sbjct: 63  ---------------------KHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPN 101

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
             +S++ +M E G+ P+E     +L       A+  G  +H +  +     NV +  A++
Sbjct: 102 SAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALI 161

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
            +YS  G V  A  VF+  S  D   WN MISG   +    +S++LFD M +    P+  
Sbjct: 162 HLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSI 221

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T V+VL+ C+  K +  G  +   +  +  +EP       ++D+ A  G ++ A    + 
Sbjct: 222 TLVSVLSACSKLKDLNVGKRVHRYVKDL-KIEPVRVLENALIDMYAACGDMDTALGIFD- 279

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV---LSYNIYKE 381
               +   D   W A+++     G++ +    + K+ E     ++  +   L  N +KE
Sbjct: 280 ---NMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKE 335


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 166/434 (38%), Positives = 262/434 (60%), Gaps = 7/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  +     P  ++  + +M     +PN  T   ++ AC     LE FG ++ +++   
Sbjct: 245 MINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLE-FGRWICSYIENN 303

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF E   + +++L+ Y     +  A+ LF+K  ++D+V+WTTM+DG+ K+G+++ A  +F
Sbjct: 304 GFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIF 363

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           + MP +   +W+A+++AY +    +  LSLF +MQ     KP+E  L+  L A A LGAI
Sbjct: 364 DAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAI 423

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H Y K++ +  N  LAT+++DMY+KCG+++ A+ VF  +  KD   W+AMI  +
Sbjct: 424 DFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGAL 483

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM G  K +L+LF  M+++  +P   TF  +L  C HA +V +G  LFE M  +YG+ PQ
Sbjct: 484 AMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQ 543

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY CVVD+  RAG++E+A  FI EKM       A VWGALL AC  +G +E+    ++
Sbjct: 544 IQHYVCVVDIFGRAGLLEKAASFI-EKMP--IPPTAAVWGALLGACSRHGNVELAELAYQ 600

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L E+   +    VL  NIY +AG W+  +N +RKL+ ++ +KK+P CS I+VNG+V EF
Sbjct: 601 NLLELEPCNHGAFVLLSNIYAKAGDWEKVSN-LRKLMRDSDVKKEPWCSSIDVNGIVHEF 659

Query: 419 LAGDNRHAQAGEIY 432
           L GDN H  + +IY
Sbjct: 660 LVGDNSHPFSQKIY 673



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 169/387 (43%), Gaps = 78/387 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRGY  ++ P  S   +L ML    E PN +TFP L KA   L  L + G  +H  V+K
Sbjct: 143 LIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVL-HLGSVLHGMVIK 201

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                D F+++SL+ FY        A  +F   P +DVV+W  M++ +   G        
Sbjct: 202 ASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGG-------- 253

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
              +P++                     L LF++M+   +KPN   +VSVL+ACA    +
Sbjct: 254 ---LPDK--------------------ALLLFQEMEMKDVKPNVITMVSVLSACAKKIDL 290

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD----------- 228
             G W+ SY +     +++IL  A++DMY KCG ++ A  +F  +S KD           
Sbjct: 291 EFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGH 350

Query: 229 --------------------AGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTF 267
                                 AWNA+IS    NG  + +L LF  M +    +P E T 
Sbjct: 351 AKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTL 410

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE---HYAC-VVDLLARAGMVEEAEKFI 323
           +  L  C  A++   G   F +   VY  +  +    H A  ++D+ A+ G + +A    
Sbjct: 411 ICAL--CASAQL---GAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKA---- 461

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGK 350
            E    +   D  VW A++ A  +YG+
Sbjct: 462 MEVFHAVERKDVYVWSAMIGALAMYGQ 488



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 32/224 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSL--VHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HAH+++     DP+  S LL  Y++     +  A+ +F++ P  ++  W T++ GY   
Sbjct: 91  IHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASS 150

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
            D   +  +F  M                  S+F                PN+     + 
Sbjct: 151 SDPTQSFLIFLHM--------------LHSCSEF----------------PNKFTFPFLF 180

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            A + L  +  G  +H    +  L  ++ +  ++++ Y   G    A  VF  +  KD  
Sbjct: 181 KAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVV 240

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           +WNAMI+  A+ G   K+L LF  M     +P   T V+VL+ C
Sbjct: 241 SWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSAC 284



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 118/293 (40%), Gaps = 27/293 (9%)

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY--SKCGH 213
           E G +   + ++  +  C +   + Q   +H++  R     +   A+ ++  Y  S C  
Sbjct: 65  EKGNEVESTNILEFIDQCTNTMQLKQ---IHAHMLRTSRFCDPYTASKLLTAYAISSCSC 121

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLT 272
           +  A +VF  I   +   WN +I G A + D  +S  +F  M+ S ++ P + TF  +  
Sbjct: 122 LIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFK 181

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
             +  K++  G ++   M     +   L     +++    +G  + A +        + G
Sbjct: 182 AASRLKVLHLG-SVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFT----NMPG 236

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392
            D   W A+++A  + G   + ++      EM + D   +V++      A         +
Sbjct: 237 KDVVSWNAMINAFALGG---LPDKALLLFQEMEMKDVKPNVITMVSVLSAC-------AK 286

Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGD---NRHAQAGEIYRVIHSFLKMS 442
           K+  E G   +  CS IE NG  E  +  +   + + + G I      F KMS
Sbjct: 287 KIDLEFG---RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMS 336


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 164/441 (37%), Positives = 264/441 (59%), Gaps = 11/441 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-----DMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           MIR Y       L++  Y  ML     +    P+ +TFP ++K+C  L    + G  VH 
Sbjct: 83  MIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGLM-CYDLGKQVHG 141

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           HV KFG   +  V +SL+E Y     +  A  +F++  +RD V+W T++ G+ ++G    
Sbjct: 142 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRR 201

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR +FE+M ++   SW+AI++ Y+RI  + + L  FR+MQ VG++P+E  LVSVL ACA 
Sbjct: 202 ARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQ 261

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G W+H YA +    +N+ +  A+++MY+KCG +     +F+ ++ +D  +W+ M
Sbjct: 262 LGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTM 321

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+A +G A +++ELF  M K+  +P   TFV +L+ C HA ++ +GL  FE+M   Y 
Sbjct: 322 IVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYN 381

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +EP +EHY C+V+LL  +G +++A + I +KM      D+ +WG+LLS+CR +  +E+  
Sbjct: 382 IEPGVEHYGCLVNLLGLSGRLDQALELI-KKMP--MKPDSAIWGSLLSSCRSHSNLEIAV 438

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                L E+   D   +VL  N+Y + G WD   +++RKL+    MKK PGCS IEV+ +
Sbjct: 439 IAMEHLLELEPADTGNYVLLSNLYADLGKWD-GVSRMRKLMRSKSMKKTPGCSSIEVDNM 497

Query: 415 VEEFLAGDNRHAQAGEIYRVI 435
           V+EF +GD+    +  IYRV+
Sbjct: 498 VQEFASGDDSKPFSKAIYRVL 518



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 155/349 (44%), Gaps = 49/349 (14%)

Query: 33  FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS 92
           F P++K C  +  L+     +HAH+VKF   +  F+V                       
Sbjct: 17  FVPILKNCPNIVELKK----IHAHIVKFSLSQSSFLV----------------------- 49

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
                   T MVD      + E A  LF+++ + NA  ++A++ AY     +   +++++
Sbjct: 50  --------TKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYK 101

Query: 153 QMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           QM      E  + P++     V+ +CA L     G  VH +  ++  + N ++  ++V+M
Sbjct: 102 QMLGHSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEM 161

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y KC  +  A  VFE ++ +DA +WN +ISG    G  +++  +F+ M       T  ++
Sbjct: 162 YVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEM----QDKTIFSW 217

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE--KFIEE 325
            A+++         D L  F  M  V G+EP       V+   A+ G +E  +   F  +
Sbjct: 218 TAIVSGYARIGCYADALEFFRRMQMV-GIEPDEISLVSVLPACAQLGALELGKWIHFYAD 276

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           K G L   +  V  AL+      G I+ G R++ ++ E  +  +ST ++
Sbjct: 277 KAGFL--RNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIV 323



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/230 (18%), Positives = 101/230 (43%), Gaps = 13/230 (5%)

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           R+++ + ++  E   V +L  C ++  + +   +H++  ++ L ++  L T +VD+ +  
Sbjct: 3   RKLRALKIREMEDIFVPILKNCPNIVELKK---IHAHIVKFSLSQSSFLVTKMVDVCNHH 59

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-----KSGTQPTETT 266
                A  +F+ +++ +A  +NAMI     N     ++ ++ +M+     ++   P + T
Sbjct: 60  AETEYANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGHSHGENPIFPDKFT 119

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           F  V+ +C    M  D           +G +        +V++  +   +++A K  EE 
Sbjct: 120 FPFVVKSCA-GLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEE- 177

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
              +   DA  W  L+S     G++     ++ ++ +  I  ++  V  Y
Sbjct: 178 ---MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGY 224


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 173/440 (39%), Positives = 266/440 (60%), Gaps = 17/440 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA-----CVILGPLENFGMFVHA 55
           +IR +     P  +   Y  ML     P+N TFP LIKA     CV++G         H+
Sbjct: 88  LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ------THS 141

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            +V+FGF  D +V +SL+  Y+    +  A  +F +   RDVV+WT+MV GY K G  EN
Sbjct: 142 QIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVEN 201

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           ARE+F++MP RN  +WS ++  Y++ + F++ + LF  M+  G+  NE+ +VSV+++CAH
Sbjct: 202 AREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAH 261

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G   + Y  + H+  N+IL TA+VDM+ +CG +  A+ VFEG+   D+ +W+++
Sbjct: 262 LGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSI 321

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+A++G A K++  F +M+  G  P + TF AVL+ C+H  +V  GL ++ENM   +G
Sbjct: 322 IKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHG 381

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +EP+LEHY C+VD+L RAG + EAE FI   +      +A + GALL AC+IY   EV  
Sbjct: 382 IEPRLEHYGCIVDMLGRAGKLAEAENFI---LKMHVKPNAPILGALLGACKIYKNTEVAE 438

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           RV   L ++       +VL  NIY  AG WD +   +R ++ E  +KK PG S+IE++G 
Sbjct: 439 RVGNMLIKVKPEHSGYYVLLSNIYACAGQWD-KIESLRDMMKEKLVKKPPGWSLIEIDGK 497

Query: 415 VEEFLAGDN-RHAQAGEIYR 433
           + +F  GD+ +H + G+I R
Sbjct: 498 INKFTMGDDQKHPEMGKIRR 517



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 120/278 (43%), Gaps = 36/278 (12%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F ++   N   ++ ++  +S  ++  +    + QM +  + P+      ++ A + +  
Sbjct: 73  IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G   HS   R+  + +V +  ++V MY+ CG + +A  +F  +  +D  +W +M++G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192

Query: 239 --------------------------VAMNGDAK-----KSLELFDRMVKSGTQPTETTF 267
                                     + +NG AK     K+++LF+ M + G    ET  
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V+V+++C H   +  G   +E +   + +   L     +VD+  R G +E+A    E   
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFE--- 308

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            GL   D+  W +++    ++G        + ++  +G
Sbjct: 309 -GLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLG 345


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  322 bits (824), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 169/438 (38%), Positives = 262/438 (59%), Gaps = 13/438 (2%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           + P L++    DML  G  P  +T    + AC  L    + G  +HA+  K     D +V
Sbjct: 103 HLPGLALLS--DMLSEGLLPTAHTLSASLPACRGL----SLGRALHAYAFKLALSGDSYV 156

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            ++LL  Y+       ARALFD+ PD  VV+ T M+  Y  MG  ++AR LF+ +P ++ 
Sbjct: 157 ATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDF 216

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           + W+A++  Y++     E L LFR+M     +P+E  +V VL+A A LG +  G W+HSY
Sbjct: 217 ICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSY 276

Query: 189 AKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
            K    ++ NV +ATA+VDMY KCG +  A++VF GI NKD   WNAMI+G AM+GD++K
Sbjct: 277 VKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRK 336

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           +LE+F ++   G  PT+ TF+ +L  C+H+ +V +G + F++M   YG++P++EHY C+V
Sbjct: 337 ALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMV 396

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           DLL RAG++EEA   ++         DA +W +LL+ACR++  + +G R+   L   G+ 
Sbjct: 397 DLLGRAGLIEEAFHLVQSLT---ITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLA 453

Query: 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
           +   ++L  NIY   G   E  +VR ++  +G++K+PGCS IE++  V EF+AGD  H  
Sbjct: 454 NSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPC 513

Query: 428 AGEIYRVIHSFLKMSNLV 445
             EIY ++    KM+ LV
Sbjct: 514 TDEIYAMLD---KMNALV 528



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 114/262 (43%), Gaps = 35/262 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q   P  ++  +  ML    EP+  T   ++ A   LG +E+ G ++H++V   
Sbjct: 222 MIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVES-GKWLHSYVKNS 280

Query: 61  GFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              + +  V ++L++ Y     +  A A+F    ++D+V W  M++GY   GD   A   
Sbjct: 281 RCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKA--- 337

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                       L +F Q+++ G+ P +   + +L AC+H G +
Sbjct: 338 ----------------------------LEMFVQLRDQGLWPTDITFIGLLNACSHSGLV 369

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G  +  S    Y ++  +     +VD+  + G +  A  + + ++   DA  W ++++
Sbjct: 370 EEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLA 429

Query: 238 GVAMNGDAKKSLELFDRMVKSG 259
              ++ +      + D +V +G
Sbjct: 430 ACRLHKNMALGQRIADFLVANG 451


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 160/432 (37%), Positives = 260/432 (60%), Gaps = 4/432 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++   P+ ++  Y  M+    +P+  T   ++ AC  L  L+  G  +H ++ + 
Sbjct: 226 LINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLK-LGREIHRYIEES 284

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      +V++L++ Y     +   + LFD    + VV+WTTM+ GY K G  + A +LF
Sbjct: 285 GLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLF 344

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPE+N V+W+A++ +  + +   E L LFR+MQ   MKP++  ++  L+AC+ LGA+ 
Sbjct: 345 HDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALD 404

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W H+Y K+++L  +V L TA++DMY+KCG++  AL VF  +  +++  W A+I G+A
Sbjct: 405 TGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLA 464

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           + G+   ++  F +M+ SG  P E TF+ VLT C H  +V +G   F+ M + + + PQ 
Sbjct: 465 LYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQP 524

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+C+V+LL RAG++EEAE+ I+         DA VWGAL  AC I+  + +G R   K
Sbjct: 525 KHYSCMVNLLGRAGLLEEAEELIKTMP---MEADAMVWGALFFACGIHRNLLIGERAASK 581

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L ++   D   +VL  N+Y+EAG   EA  +RK++ E G++K PG S IEVNG++ EF+ 
Sbjct: 582 LLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIV 641

Query: 421 GDNRHAQAGEIY 432
            D  H Q+ +IY
Sbjct: 642 RDKSHPQSEQIY 653



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 168/398 (42%), Gaps = 69/398 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG +++  P+  +  Y  ML   G  P+NYT+  L K C  L  L   G  +   V+K
Sbjct: 124 VIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANL-VLSYMGFEILGQVLK 182

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF +D ++ + ++     V + G A  +FD+   RD+V                     
Sbjct: 183 MGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLV--------------------- 221

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                     SW++++  Y R    +E + +++QM    +KP+E  ++ V++ACA L ++
Sbjct: 222 ----------SWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESL 271

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H Y +   L   + L  A++DMY KCG + +   +F+ +  K   +W  MI G 
Sbjct: 272 KLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGY 331

Query: 240 AMNGDAK-------------------------------KSLELFDRMVKSGTQPTETTFV 268
           A NG                                  ++LELF  M  S  +P + T +
Sbjct: 332 AKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTML 391

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
             L+ C+    +  G+    N    + +   +     ++D+ A+ G + +A +   E   
Sbjct: 392 HCLSACSQLGALDTGM-WTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNE--- 447

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +   ++  W A++    +YG +      + K+ + G+
Sbjct: 448 -MPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGL 484



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 28/151 (18%), Positives = 67/151 (44%), Gaps = 13/151 (8%)

Query: 187 SYAKRYHLEKNVILATAVVDMY-----------SKCGHVHSALSVFEGISNKDAGAWNAM 235
           S+++   ++  +IL   ++D +           S+  ++   + +   + N +  +WNA+
Sbjct: 65  SFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAV 124

Query: 236 ISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           I G   + + +K L L+ RM+ ++G +P   T+  +   C +  +   G  +   +  + 
Sbjct: 125 IRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKM- 183

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           G +  +  Y  ++ +L   G    A K  +E
Sbjct: 184 GFDKDMYLYNGIIHMLVSVGESGLAHKVFDE 214


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 176/445 (39%), Positives = 264/445 (59%), Gaps = 12/445 (2%)

Query: 1   MIRGY-MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRGY +Q  F + SV  Y  M   G  P ++TF  L+KAC     + N G  VH   + 
Sbjct: 110 LIRGYALQGPFME-SVLLYNSMRRQGIGPVSFTFTALLKACSAALDV-NLGRQVHTQTIL 167

Query: 60  FG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            G FG D +V ++L++ Y     +G    +FD+  DRDV++WT+++  Y K+G+ E A E
Sbjct: 168 IGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASE 227

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+ +P ++ V+W+A++  Y++ +  +E L +F +MQ  G+K +E  LV V++ACA LGA
Sbjct: 228 LFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGA 287

Query: 179 ITQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
                WV   A++  +    NV++ +A++DMY+KCG V  A  VFE +  ++  ++++MI
Sbjct: 288 AKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMI 347

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G AM+G A  ++ELFD M+K+  +P   TF+ VLT C+HA MV  G  LF  M   +GV
Sbjct: 348 VGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGV 407

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  +HYAC+VDLL RAG +EEA   ++       GG   VWGALL ACRI+G  ++   
Sbjct: 408 APSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGG---VWGALLGACRIHGNPDMAQI 464

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIE-VNGV 414
               L E+       ++L  NIY  AG WD + +KVRKL+   G+KK PGCS +E   G+
Sbjct: 465 AASHLFELEPNGIGNYILLSNIYASAGRWD-DVSKVRKLMRAKGLKKNPGCSWVEGKKGI 523

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
           + EF AGD  H ++ EI + +   L
Sbjct: 524 IHEFFAGDMSHPKSREIKQALEDLL 548



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 134/311 (43%), Gaps = 72/311 (23%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHAH+ + G  +  FV++ LL                     R +      +D Y ++  
Sbjct: 58  VHAHIFRKGLEQCCFVLAKLL---------------------RTLTKLDVPMDPYPRL-- 94

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                 +F+++   N   W+A++  Y+    F E + L+  M+  G+ P      ++L A
Sbjct: 95  ------VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKA 148

Query: 173 CAHLGAITQGLWVHS---------------------YAK-----------RYHLEKNVIL 200
           C+    +  G  VH+                     Y K              L+++VI 
Sbjct: 149 CSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVIS 208

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            T+++  Y+K G++ +A  +F+G+  KD  AW AM++G A N   +++LE+F+RM  +G 
Sbjct: 209 WTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGV 268

Query: 261 QPTETTFVAVLTTCT------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           +  E T V V++ C       +A  VRD         + +G    +   + ++D+ A+ G
Sbjct: 269 KTDEVTLVGVISACAQLGAAKYANWVRDVAE-----QSGFGPTSNVVVGSALIDMYAKCG 323

Query: 315 MVEEAEKFIEE 325
            VE+A K  E 
Sbjct: 324 SVEDAYKVFER 334



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 13/227 (5%)

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           RQ Q++     ES LVSVL  C H+  + Q   VH++  R  LE+   +   ++   +K 
Sbjct: 32  RQEQKI----LESRLVSVLHGCTHINQVKQ---VHAHIFRKGLEQCCFVLAKLLRTLTKL 84

Query: 212 GHVHSALS--VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                     VF+ +   +   W A+I G A+ G   +S+ L++ M + G  P   TF A
Sbjct: 85  DVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTA 144

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           +L  C+ A  V  G  +      + G    L     ++D+  + G +    +  +E +  
Sbjct: 145 LLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEML-- 202

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
               D   W +L+ A    G +E  + ++  L    +  ++  V  Y
Sbjct: 203 --DRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGY 247


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  321 bits (823), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +L M D    P   T   ++ AC  L  L   G  VH++V       +  + +++++ Y+
Sbjct: 207 FLVMEDKQVLPTTVTLVLVLSACSKLKDLRT-GKKVHSYVKNCKVESNLVLENAMIDMYA 265

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              +M +A  +F    +RD+++WTT+V G+  +G+ + AR  F+KMPE++ VSW+A++  
Sbjct: 266 DCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDG 325

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y R + FKE L LFR MQ   +KP+E  +VSVLTACAHLGA+  G W+ +Y  R  ++ +
Sbjct: 326 YIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKND 385

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +  A++DMY KCG V  A S+F  +S +D   W AMI G+A+NG  +K+L++F  M+K
Sbjct: 386 LFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLK 445

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +   P E T++ VL+ CTH  +V  G   F  M++ +G+EP + HY C+VDLLARAG ++
Sbjct: 446 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 505

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA + IE         ++ VWGALL+ CR+Y + ++   V +++ E+   + + +VL  N
Sbjct: 506 EAYEVIENMP---IKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCN 562

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           IY       +  ++R+++ + G+KK PGCS+IE+NG V EF+AGD  H Q   I
Sbjct: 563 IYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNI 616



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 174/380 (45%), Gaps = 68/380 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY + +FP+L V  YL+ML  G +P+ YTFP L K       LE +G  +H HV+K 
Sbjct: 89  MIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALE-YGRQLHGHVLKH 147

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + FV ++L++ Y L                                G  + AR +F
Sbjct: 148 GLQYNVFVHTALVQMYLLC-------------------------------GQLDTARGVF 176

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +  P+ + ++W+ I++AY+++  F+E   LF  M++  + P    LV VL+AC+ L  + 
Sbjct: 177 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLR 236

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-------------- 226
            G  VHSY K   +E N++L  A++DMY+ CG + SAL +F  ++N              
Sbjct: 237 TGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFT 296

Query: 227 -----------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                            KD  +W AMI G   +   K++LELF  M  +  +P E T V+
Sbjct: 297 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 356

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VLT C H   +  G            ++  L     ++D+  + G V++AE    E    
Sbjct: 357 VLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE---- 411

Query: 330 LGGGDANVWGALLSACRIYG 349
           +   D   W A++    + G
Sbjct: 412 MSQRDKFTWTAMIVGLAVNG 431



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 153/362 (42%), Gaps = 43/362 (11%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
            F P  +    L++ C  +  L+     VH   +K G   +P + + ++ F    H+ G 
Sbjct: 13  SFSPPTHPLISLLETCESMDQLQQ----VHCQAIKKGLNANPVLQNRVMTF-CCTHEYG- 66

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                                      DF+ AR LF+++PE N   W+ ++  YSR+ DF
Sbjct: 67  ---------------------------DFQYARRLFDEIPEPNLFIWNTMIRGYSRL-DF 98

Query: 145 KEV-LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            ++ +SL+ +M   G+KP+      +        A+  G  +H +  ++ L+ NV + TA
Sbjct: 99  PQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTA 158

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +V MY  CG + +A  VF+     D   WN +IS     G  ++S  LF  M      PT
Sbjct: 159 LVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPT 218

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             T V VL+ C+  K +R G  +   +     VE  L     ++D+ A  G ++ A    
Sbjct: 219 TVTLVLVLSACSKLKDLRTGKKVHSYVKNC-KVESNLVLENAMIDMYADCGEMDSALGIF 277

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY---NIYK 380
                 +   D   W  ++S     G+I+V    + K+ E     ++  +  Y   N +K
Sbjct: 278 R----SMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 333

Query: 381 EA 382
           EA
Sbjct: 334 EA 335


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  321 bits (822), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 159/414 (38%), Positives = 253/414 (61%), Gaps = 4/414 (0%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +L M D    P   T   ++ AC  L  L   G  VH++V       +  + +++++ Y+
Sbjct: 228 FLVMEDKQVLPTTVTLVLVLSACSKLKDLRT-GKKVHSYVKNCKVESNLVLENAMIDMYA 286

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              +M +A  +F    +RD+++WTT+V G+  +G+ + AR  F+KMPE++ VSW+A++  
Sbjct: 287 DCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDG 346

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y R + FKE L LFR MQ   +KP+E  +VSVLTACAHLGA+  G W+ +Y  R  ++ +
Sbjct: 347 YIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKND 406

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +  A++DMY KCG V  A S+F  +S +D   W AMI G+A+NG  +K+L++F  M+K
Sbjct: 407 LFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLK 466

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +   P E T++ VL+ CTH  +V  G   F  M++ +G+EP + HY C+VDLLARAG ++
Sbjct: 467 ASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLK 526

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA + IE         ++ VWGALL+ CR+Y + ++   V +++ E+   + + +VL  N
Sbjct: 527 EAYEVIENMP---IKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCN 583

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           IY       +  ++R+++ + G+KK PGCS+IE+NG V EF+AGD  H Q   I
Sbjct: 584 IYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNI 637



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 174/380 (45%), Gaps = 68/380 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY + +FP+L V  YL+ML  G +P+ YTFP L K       LE +G  +H HV+K 
Sbjct: 110 MIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALE-YGRQLHGHVLKH 168

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + FV ++L++ Y L                                G  + AR +F
Sbjct: 169 GLQYNVFVHTALVQMYLLC-------------------------------GQLDTARGVF 197

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +  P+ + ++W+ I++AY+++  F+E   LF  M++  + P    LV VL+AC+ L  + 
Sbjct: 198 DVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLR 257

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-------------- 226
            G  VHSY K   +E N++L  A++DMY+ CG + SAL +F  ++N              
Sbjct: 258 TGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFT 317

Query: 227 -----------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                            KD  +W AMI G   +   K++LELF  M  +  +P E T V+
Sbjct: 318 NLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVS 377

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VLT C H   +  G            ++  L     ++D+  + G V++AE    E    
Sbjct: 378 VLTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFRE---- 432

Query: 330 LGGGDANVWGALLSACRIYG 349
           +   D   W A++    + G
Sbjct: 433 MSQRDKFTWTAMIVGLAVNG 452



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 153/362 (42%), Gaps = 43/362 (11%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
            F P  +    L++ C  +  L+     VH   +K G   +P + + ++ F    H+ G 
Sbjct: 34  SFSPPTHPLISLLETCESMDQLQQ----VHCQAIKKGLNANPVLQNRVMTF-CCTHEYG- 87

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                                      DF+ AR LF+++PE N   W+ ++  YSR+ DF
Sbjct: 88  ---------------------------DFQYARRLFDEIPEPNLFIWNTMIRGYSRL-DF 119

Query: 145 KEV-LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            ++ +SL+ +M   G+KP+      +        A+  G  +H +  ++ L+ NV + TA
Sbjct: 120 PQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTA 179

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +V MY  CG + +A  VF+     D   WN +IS     G  ++S  LF  M      PT
Sbjct: 180 LVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPT 239

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             T V VL+ C+  K +R G  +   +     VE  L     ++D+ A  G ++ A    
Sbjct: 240 TVTLVLVLSACSKLKDLRTGKKVHSYVKNC-KVESNLVLENAMIDMYADCGEMDSALGIF 298

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY---NIYK 380
                 +   D   W  ++S     G+I+V    + K+ E     ++  +  Y   N +K
Sbjct: 299 R----SMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFK 354

Query: 381 EA 382
           EA
Sbjct: 355 EA 356


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  321 bits (822), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 164/439 (37%), Positives = 261/439 (59%), Gaps = 5/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I GY++   P+ ++  +  M+ D    P+  T   ++     L  LE  G  +H +V  
Sbjct: 192 LIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLE-LGRRLHGYVES 250

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G      +++ +++ Y     +  A+++F+    + +V+WTTM+ GY + G  ++AR++
Sbjct: 251 HGVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKV 310

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MPER+   W+A+M  Y +    KE L LF  MQE  ++P++  +V++L+AC+ LGA+
Sbjct: 311 FDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGAL 370

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+WVH Y  R  +  +V+L T +VDMYSKCG++  A+ VF+ I  K+A  W AMISG+
Sbjct: 371 EMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGL 430

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G A  +++ F RM++ G QP E TF+ VL+ C HA +V++G   F  M + Y +E +
Sbjct: 431 ANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERK 490

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY+C+VDLL RAG ++EAE  +          DA VWGAL  ACR++G I +G +   
Sbjct: 491 MKHYSCMVDLLGRAGYLDEAEHLVNTMP---MEPDAVVWGALFFACRMHGNITLGEKAAM 547

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL E+   D   +VL  N+Y EA    +A+KVR ++   G++K PGCS IE+NGVV EF+
Sbjct: 548 KLVELDPGDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFI 607

Query: 420 AGDNRHAQAGEIYRVIHSF 438
             D  H     IY  +H  
Sbjct: 608 VKDKSHTDIAAIYDCLHEI 626



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 166/375 (44%), Gaps = 75/375 (20%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            P++ TFP L+KAC  L    N+G  V  +V+  GF  D FVV++ + F ++   M  AR
Sbjct: 117 RPDHLTFPFLLKACARLQE-RNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEAR 175

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD S  RD+V+W T++ GY + G    A E+F +M    AV+                
Sbjct: 176 KLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVT---------------- 219

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
                         P+E  ++ V++  A L  +  G  +H Y + + +   V L   V+D
Sbjct: 220 --------------PDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNVVMD 265

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY KCG +  A SVFEGI  K   +W  MI G A  G    + ++FD M +    P    
Sbjct: 266 MYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFP---- 321

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----------------------LEHY- 303
           + A++T     K  ++ L LF +M     VEP                       + HY 
Sbjct: 322 WNALMTGYVQCKRGKEALRLFHDMQEAM-VEPDDITMVNLLSACSQLGALEMGMWVHHYI 380

Query: 304 ------------ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
                         +VD+ ++ G +E+A +  +E    +   +A  W A++S    +G  
Sbjct: 381 DRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKE----IPEKNALTWTAMISGLANHGHA 436

Query: 352 EVGNRVWRKLAEMGI 366
           +V  + ++++ E+G+
Sbjct: 437 DVAIKYFQRMIELGL 451



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 10/257 (3%)

Query: 124 PERNAVSWSAIMAAYSRISD---FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           P  +A  ++A + A S  +D       L L+  +     +P+      +L ACA L    
Sbjct: 79  PPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSA-RPDHLTFPFLLKACARLQERN 137

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V           +V +  A +   + C  +  A  +F+G   +D  +WN +I G  
Sbjct: 138 YGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTLIGGYV 197

Query: 241 MNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
             G  +++LE+F RMV  G   P E T + V++     + +  G  L   + + +GV   
Sbjct: 198 RRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVES-HGVRCT 256

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +     V+D+  + G +E A+   E    G+       W  ++     +G ++   +V+ 
Sbjct: 257 VRLMNVVMDMYIKCGDLERAKSVFE----GIDKKTIVSWTTMIVGYAQFGLMDDARKVFD 312

Query: 360 KLAEMGITDFSTHVLSY 376
           ++ E  +  ++  +  Y
Sbjct: 313 EMPERDVFPWNALMTGY 329


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  320 bits (821), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 161/428 (37%), Positives = 251/428 (58%), Gaps = 3/428 (0%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++DM   G  P   T+  ++ AC         GM VH  VV  G   D  V ++L++ Y+
Sbjct: 132 FVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYA 191

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               M +A  LFD    R VV+WT+++ G  ++G  + AR+LF +MPER+ VSW+A++  
Sbjct: 192 ECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDG 251

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y + + F+E L +FR+MQ   +  +E  +VSV+TACA LGA+  G WV  Y  R  ++ +
Sbjct: 252 YVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMD 311

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             +  A++DMYSKCG +  AL VF+ + ++D   W A+I G+A+NG  ++++E+F RM+ 
Sbjct: 312 AFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIG 371

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
               P E TF+ VLT CTHA +V  G   F +M   Y + P + HY C++DL  RAG + 
Sbjct: 372 VSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKIT 431

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA   I++        ++ +WG LL+ACR++G  E+G  V  +L +M   + + + L  N
Sbjct: 432 EALDAIDQMP---MTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSN 488

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           IY +     +  ++R  I E G+KK+PGCS+IE+NG++ EF+AGD  H  + EIY  + S
Sbjct: 489 IYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLES 548

Query: 438 FLKMSNLV 445
            +   N V
Sbjct: 549 IINDLNNV 556



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 124/276 (44%), Gaps = 37/276 (13%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  P+ YTFPPL+KA V  G        VHAHVVKFG G +  V +SL+  Y+
Sbjct: 31  YARMLARGAMPDAYTFPPLLKA-VARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYA 89

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                  ARAL  +  +RD                                V W+A+++ 
Sbjct: 90  AGGDGAAARALLSER-ERD------------------------------TPVVWNALISG 118

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH-LGAITQGLWVHSYAKRYHLEK 196
           ++R   F E    F  M   G  P     VSVL+AC    G +  G+ VH       +  
Sbjct: 119 HNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLP 178

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           ++ +  A+VDMY++C  + SA  +F+G+  +   +W +++SG+   G   ++ +LF RM 
Sbjct: 179 DLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMP 238

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           +  T     ++ A++     A   R+ L +F  M  
Sbjct: 239 ERDT----VSWTAMIDGYVQAARFREALEMFREMQC 270



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 121/274 (44%), Gaps = 36/274 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+QA   + ++  + +M       + +T   +I AC  LG LE  G +V  ++ + 
Sbjct: 248 MIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALE-MGEWVRVYMSRQ 306

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV ++L++ YS    +  A  +F     RD  TWT ++ G    G  E A E+F
Sbjct: 307 GIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMF 366

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +                               M  V   P+E   + VLTAC H G + 
Sbjct: 367 HR-------------------------------MIGVSETPDEVTFIGVLTACTHAGLVD 395

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +  S  + Y++  NV+    ++D++ + G +  AL   + +    ++  W  +++ 
Sbjct: 396 KGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAA 455

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
             ++G+++    + +R+++    P  +T   +L+
Sbjct: 456 CRVHGNSEIGELVTERLLQ--MDPENSTVYTLLS 487



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 110/264 (41%), Gaps = 20/264 (7%)

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           +AR L E +P R  V+              ++ ++ + +M   G  P+      +L A A
Sbjct: 7   HARRLLEGIPRRCLVAAR------------EDAVAGYARMLARGAMPDAYTFPPLLKAVA 54

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
              +      VH++  ++ + +N  +AT++V  Y+  G   +A ++           WNA
Sbjct: 55  RGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNA 114

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +ISG        ++   F  M ++G  PT  T+V+VL+ C   K   D L   +    V 
Sbjct: 115 LISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSAC--GKGTGDVLLGMQVHGRVV 172

Query: 295 --GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             GV P L     +VD+ A    +E A K  +    G+       W +LLS     G+++
Sbjct: 173 GSGVLPDLRVENALVDMYAECADMESAWKLFD----GMQVRSVVSWTSLLSGLTRLGRVD 228

Query: 353 VGNRVWRKLAEMGITDFSTHVLSY 376
               ++ ++ E     ++  +  Y
Sbjct: 229 EARDLFGRMPERDTVSWTAMIDGY 252


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 177/439 (40%), Positives = 263/439 (59%), Gaps = 12/439 (2%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P LS+  Y  ML     PN +TFP LI+AC     LE     +HAHV+KFGFG D + ++
Sbjct: 84  PSLSLLFYSHMLQHCVTPNAFTFPSLIRAC----KLEEEAKQLHAHVLKFGFGGDTYALN 139

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAV 129
           +L+  Y     +  AR +F    D +VV+WT++V GY + G  + A  +FE MP ++N+V
Sbjct: 140 NLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSV 199

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           SW+A++A + + + F+E  +LFR+M+ E  M+ +     ++L+AC  +GA+ QG+W+H Y
Sbjct: 200 SWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKY 259

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
            ++  +  +  LAT ++DMY KCG +  A  VF G+  K   +WN MI G AM+G  + +
Sbjct: 260 VEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDA 319

Query: 249 LELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           + LF  M +     P   TFV VLT C H+ +V +G   F  M  V+G++P  EHY C+V
Sbjct: 320 IRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMV 379

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           DLLARAG +EEA+K I+E        DA V GALL ACRI+G +E+G  V  ++ E+   
Sbjct: 380 DLLARAGRLEEAKKVIDEMPMS---PDAAVLGALLGACRIHGNLELGEEVGNRVIELDPE 436

Query: 368 DFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
           +   +V+  N+Y   G W+  A  VRKL+ + G+KK+PG S+IE+ GVV EF+AG   H 
Sbjct: 437 NSGRYVILGNMYASCGKWEQVAG-VRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHP 495

Query: 427 QAGEIYRVIHSFLKMSNLV 445
            A  IY  I+  L+   +V
Sbjct: 496 LAEAIYAKIYEMLESIRVV 514



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 142/332 (42%), Gaps = 46/332 (13%)

Query: 66  PFVVSSLLEF---YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
           P+  SS+ E    +SL+ ++G +    +      + T+ ++     K GD   A +LF  
Sbjct: 9   PWACSSMAEVKQQHSLLLRLGLST---NNHAMSRIFTFCSL----SKHGDINYALKLFTT 61

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTAC-------- 173
           +P  +   ++ +  A+  +S    +  LF   M +  + PN     S++ AC        
Sbjct: 62  LPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLEEEAKQ 121

Query: 174 --AHL-----GAITQGL--WVHSY--------AKRYHL---EKNVILATAVVDMYSKCGH 213
             AH+     G  T  L   +H Y        A+R      + NV+  T++V  YS+ G 
Sbjct: 122 LHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGL 181

Query: 214 VHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVL 271
           V  A  VFE +   K++ +WNAMI+        +++  LF RM V+   +        +L
Sbjct: 182 VDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATML 241

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           + CT    +  G+ + + +    G+    +    ++D+  + G +++A         GL 
Sbjct: 242 SACTGVGALEQGMWIHKYVEKT-GIVLDSKLATTIIDMYCKCGCLDKAFHVF----CGLK 296

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
               + W  ++    ++GK E   R+++++ E
Sbjct: 297 VKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEE 328


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  320 bits (820), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 154/406 (37%), Positives = 248/406 (61%), Gaps = 6/406 (1%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+ +TFP ++KAC  LG L N G  VHA   KFG        ++L++ Y+    +  A  
Sbjct: 93  PDEFTFPFVVKACARLG-LHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHN 151

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           LFD+  +R  ++W  ++ G+ ++G    AR LF++MP R  VSW+AI++ Y+RI  + + 
Sbjct: 152 LFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDA 211

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L +FR+MQ  G++P+E+ ++SVL ACA LGA+  G W+H +  R  L +   +  A+++M
Sbjct: 212 LDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIEM 271

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG +  A  +F+ +  +D  +W+ MI G+A +G  ++++ +F+RM ++  +P   TF
Sbjct: 272 YTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPNGITF 331

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V +L+ C HA    +GL  F+ M   + +EP++EHY  +VDLL RAG + +A   + EKM
Sbjct: 332 VGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSLVDLLGRAGRLSQALDIV-EKM 390

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
                 D+ +WG+LLS+CR +  IEV       L E+   D   +VL  NIY + G WD 
Sbjct: 391 P--MKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDTGNYVLLSNIYADLGKWD- 447

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           + +++RKL+    MKK PGCS+IEVN V +EF++GD+    + EI+
Sbjct: 448 DVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSKEIF 493



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 104/230 (45%), Gaps = 41/230 (17%)

Query: 18  YLDMLDM-------GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           Y+D LD+       G EP+  +   ++ AC  LG LE  G ++H    + G      + +
Sbjct: 208 YIDALDVFREMQIAGIEPDEASIISVLPACAKLGALET-GKWIHMFCARNGLLRRTCICN 266

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
           +L+E Y+    +  A  LFD+   RDV++W+TM+ G    G    A  +FE+M + N   
Sbjct: 267 ALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTN--- 323

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYA 189
                                       +KPN    V +L+ACAH G   +GL +  +  
Sbjct: 324 ----------------------------IKPNGITFVGLLSACAHAGFWEEGLMYFDTMK 355

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
           K +H+E  +    ++VD+  + G +  AL + E +  K D+  W +++S 
Sbjct: 356 KDFHIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSS 405



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 14/226 (6%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA------YSRISDF-KEVLSLFR- 152
           T M+D   +  D + A  LF+++ + NA  ++A++ A      YS   DF K++L  +R 
Sbjct: 24  TKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRN 83

Query: 153 -QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            Q  E  + P+E     V+ ACA LG    G  VH+   ++  + ++I   A++DMY+KC
Sbjct: 84  SQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKC 143

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
            ++  A ++F+ +  + A +WN +ISG    G  +++  LFD M       T  ++ A++
Sbjct: 144 DNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEM----PNRTIVSWTAII 199

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +  T      D L++F  M  + G+EP       V+   A+ G +E
Sbjct: 200 SGYTRIGSYIDALDVFREMQ-IAGIEPDEASIISVLPACAKLGALE 244


>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  320 bits (820), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 172/436 (39%), Positives = 257/436 (58%), Gaps = 5/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG+ +++ P+ S+  Y+DML     +P   T+P + KA   L  L + G  +H  ++K
Sbjct: 92  IIRGFSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLD-LASEGAQLHGKMIK 150

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D F+ +++L  Y        AR +FD+  D D+V W TM+ G  K G  + +R L
Sbjct: 151 LGLENDSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRL 210

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+KM  RNAVSW+++++ Y R   F + L LF++MQ   ++P+E  +VS+L ACA LGAI
Sbjct: 211 FDKMSLRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAI 270

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H Y  +   E N I+ TA++DMYSKCG +  A+ VF+    +    WN+MI G+
Sbjct: 271 RQGEWIHDYMVKKKFELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGL 330

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG   ++L+LF  +  S  +P + +F+AVLT C H  MV    + F  M   Y ++P 
Sbjct: 331 AMNGQENEALQLFSVLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPG 390

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++H++C+VD+L RAG++EEAE+ I          DA +WG+LL +C  YG I++  R   
Sbjct: 391 IKHFSCMVDVLGRAGLLEEAEELIRSMH---VDPDAIIWGSLLWSCCKYGNIKMAKRAAN 447

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L E+  ++ S+ VL  N Y  A    EA K R  + E  + K+PGCS IEV G V EF+
Sbjct: 448 HLIELNPSESSSFVLVANAYAAANNFEEALKERLTLKENHIGKEPGCSCIEVGGEVHEFV 507

Query: 420 AGDNRHAQAGEIYRVI 435
           AG   H +  EIYRV+
Sbjct: 508 AGGRAHPEIKEIYRVL 523



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 79/356 (22%), Positives = 141/356 (39%), Gaps = 84/356 (23%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           YL MLD              K C  +  L+     +H+ ++K G  +D    S +L F +
Sbjct: 24  YLSMLD--------------KNCTTMKDLKK----IHSQLIKTGLAKDTNAASRILAFCA 65

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                         SP                 GD   A  +F ++   N  +W+ I+  
Sbjct: 66  --------------SP----------------AGDINYAYLVFVQIQNPNIFAWNTIIRG 95

Query: 138 YSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           +SR S  +  +SL+  M     ++P      SV  A A L   ++G  +H    +  LE 
Sbjct: 96  FSRSSVPQNSISLYIDMLLTSPVQPQRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLEN 155

Query: 197 NVILATAVVDMY-------------------------------SKCGHVHSALSVFEGIS 225
           +  +   ++ MY                               +KCG V  +  +F+ +S
Sbjct: 156 DSFIRNTILFMYVNCGFTSEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMS 215

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
            ++A +WN+MISG   NG    +LELF +M     +P+E T V++L  C     +R G  
Sbjct: 216 LRNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEW 275

Query: 286 LFENM-SAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWG 339
           + + M    + + P +     ++D+ ++ G +++A + F      GL   ++ + G
Sbjct: 276 IHDYMVKKKFELNPIV--VTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILG 329


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 178/428 (41%), Positives = 249/428 (58%), Gaps = 9/428 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIR Y ++  P  S   Y  +L       P+NYTF  L++ C         G  VH  ++
Sbjct: 80  MIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQSAC--EAGPAVHGALI 137

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GF  DP V S L+  Y+ +  + +   +F+     D+V  TTMV    K GD   AR 
Sbjct: 138 KHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARN 197

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+ MP+R+ VSW+A++A Y++    +E L+LF+ MQ  G+K NE  ++SV+TAC HLGA
Sbjct: 198 LFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGA 257

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W H+Y ++  ++  V L TA+VDMY KCG+V  AL VF  ++ K+   W+  I G
Sbjct: 258 LDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGG 317

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AMNG  +K LELF  M   G  P E TF++VL  C+    V +G + F++M   +G+EP
Sbjct: 318 LAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEP 377

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C+VDL  RAG +EEA  FI         G    WGALL+ACR+Y  +E+G    
Sbjct: 378 RLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAG---AWGALLNACRMYKNMELGEFAS 434

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           RKL E+   +   +V   NIY + G WD  +N VR+ +   G+ K PGCSV+EVNG V E
Sbjct: 435 RKLIEVEGKNHGAYVSLSNIYADTGNWDRVSN-VRQSMKAEGISKLPGCSVMEVNGEVHE 493

Query: 418 FLAGDNRH 425
           F +GD  H
Sbjct: 494 FFSGDKSH 501


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 175/393 (44%), Positives = 237/393 (60%), Gaps = 11/393 (2%)

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--PDRDVVTWTTMVDGYGKMGDFENA 116
           K G    P V + LL+ Y  +  +  AR +FD S     DVV+W TMV GYGK GD E A
Sbjct: 109 KCGALAHPVVTNCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAA 168

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           RE+F +MPER  VSWSA++ A  R  +F E L +F QM   G KP+   LVSVL  CAHL
Sbjct: 169 REVFVRMPERGLVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHL 228

Query: 177 GAITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           GA+ +G WVH + K   L     NV+L TA+VDMY KCG ++ A  VF+G+ + D   WN
Sbjct: 229 GALERGRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWN 288

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI G+AMNG  K++LELF RM+  G  P E+TFV  L  C H   V +G ++F +M   
Sbjct: 289 AMIGGLAMNGHGKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRD- 347

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           +G+EP+ EHY C+ DLL RAG++EEAE   ++  M       A+ WGAL+S+C ++  + 
Sbjct: 348 HGIEPRREHYGCLADLLGRAGLLEEAEGVLLDMPM----EPHASQWGALMSSCLMHNNVG 403

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           VG RV +KL E+   D   +V  +N+Y   G   +A  +RK++ E G KK+ G S IE N
Sbjct: 404 VGERVGKKLIELEPDDGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWN 463

Query: 413 GVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
           G+V EF +GD RH Q   IY ++    +   L+
Sbjct: 464 GLVHEFRSGDTRHPQTRLIYALLEDMEQRLQLI 496



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 91/238 (38%), Gaps = 43/238 (18%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP---FVVSSLLEFYSLVHK 81
           GF+P+      ++K C  LG LE  G +VH  +     G  P    + ++L++ Y     
Sbjct: 210 GFKPDAVVLVSVLKTCAHLGALER-GRWVHRFLKAERLGGRPGNVMLETALVDMYCKCGC 268

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           M  A  +FD     DVV W  M+ G    G  + A                         
Sbjct: 269 MNEAWWVFDGVQSHDVVLWNAMIGGLAMNGHGKRA------------------------- 303

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
                 L LFR+M + G  PNES  V  L AC H G + +G  V    + + +E      
Sbjct: 304 ------LELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMRDHGIEPRREHY 357

Query: 202 TAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGD-------AKKSLEL 251
             + D+  + G +  A  V   +     A  W A++S   M+ +        KK +EL
Sbjct: 358 GCLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIEL 415


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 164/408 (40%), Positives = 244/408 (59%), Gaps = 8/408 (1%)

Query: 28  PNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           PN Y+F    K C   +G LE  G  V  H +K G   + FV ++L+  Y  +  +  AR
Sbjct: 100 PNQYSFAFAFKGCGSGVGVLE--GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDAR 157

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD SP+RD+ +W  M+ GY ++G  + AR+LF++MPE++ VSW+ +++   ++  F E
Sbjct: 158 KVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFME 217

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            L +F  M   GM PNE  L S L ACA+L A+ QG W+H Y K+ +++ N  L   ++D
Sbjct: 218 ALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAGLID 277

Query: 207 MYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           MY+KCG +  A  +F       +    WNAMI G A++G +K+++E+F++M      P +
Sbjct: 278 MYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNK 337

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFVA+L  C+H   V +G   FE+M++ Y V+P+LEHY C+VDLL RAG ++EAE+ I 
Sbjct: 338 VTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIIS 397

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
                    D  +WGALLSAC+I+   E+G RV + + E+       HVL  NIY   G 
Sbjct: 398 SMH---LTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSLTGN 454

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
             EA  +R+ I+E+G KK PGCS IE+NG+  +FL GD  H Q  ++Y
Sbjct: 455 WNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLY 502



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 36/250 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G +Q  +   ++  + +ML  G  PN YT    + AC  L  L+  G ++H ++ K 
Sbjct: 205 MISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQ-GRWMHVYIKKN 263

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMVDGYGKMGDFENARE 118
               +  +++ L++ Y+   ++  A  LF+ +P   R V  W  M+ G+   G  + A E
Sbjct: 264 NIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIE 323

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +FE                               QM+   + PN+   V++L AC+H   
Sbjct: 324 VFE-------------------------------QMKIEKVSPNKVTFVALLNACSHGNR 352

Query: 179 ITQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMI 236
           + +G  +  S A  Y ++  +     +VD+  + G +  A  +   +    D   W A++
Sbjct: 353 VEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALL 412

Query: 237 SGVAMNGDAK 246
           S   ++ DA+
Sbjct: 413 SACKIHKDAE 422



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 37/265 (13%)

Query: 53  VHAHVVKFGFGEDPFVVSSLL-EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           VHA ++  G    P   + LL +  S+   +  A  +FD  P  D+  + T++       
Sbjct: 20  VHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTII------- 72

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
                            +++S   +A S    F +  SL R+ + V   PN+        
Sbjct: 73  ---------------KVLAFSTTSSADS----FTKFRSLIREERLV---PNQYSFAFAFK 110

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            C     + +G  V  +A +  LE N+ +  A++ MY     V  A  VF+   N+D  +
Sbjct: 111 GCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYS 170

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN M+SG A  G   ++ +LFD M +        ++  +++ C       + L++F NM 
Sbjct: 171 WNIMLSGYARLGKMDEARQLFDEMPEKDV----VSWTTMISGCLQVGYFMEALDIFHNML 226

Query: 292 AVYGVEPQLEHYACVVDLLARAGMV 316
           A  G+ P    Y     L A A +V
Sbjct: 227 A-KGMSPN--EYTLASSLAACANLV 248


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/444 (37%), Positives = 253/444 (56%), Gaps = 13/444 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP--------NNYTFPPLIKACVILGPLENFGMF 52
           MI+ Y Q +  + +V  Y+ ML     P        + +T+P L+KAC  L      G  
Sbjct: 79  MIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAA-SRLGRQ 137

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHAHV + G      V +SL+E Y+    + TAR  FD   ++DVV+W T++  + +MG 
Sbjct: 138 VHAHVARSGCESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQ 197

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              ARELF  MP++  VSW+A+++ Y+ + DF   + +FR MQ  G +P++  +V+VL A
Sbjct: 198 MRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPA 257

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA LGA+  G W+++Y  ++ +   V +  A+++MY+KCG +  AL +F G+S KD  +W
Sbjct: 258 CAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISW 317

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           +  I G+A +G A++++ LF+ M + G   P   TFV +L+ C+HA +V +GL   + M 
Sbjct: 318 STAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMK 377

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
             YGVEP +EHY CVVDLL R+G ++ A   I    G     D  +WG+LLSACR +G +
Sbjct: 378 EDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIR---GMPVPPDGKIWGSLLSACRSHGDV 434

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
           E       +L E+   D    V+  N+Y  AG   E    RK I     +K PGCS+IEV
Sbjct: 435 ETAVVAAERLVELEPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEV 494

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVI 435
           + VV EF+AG +   + G I  V+
Sbjct: 495 DNVVREFVAGQDLGPELGGIATVL 518



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 16/223 (7%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E  +++ L  CA    +   L  H  A R  L ++  +AT +V + +  G    A  VF 
Sbjct: 10  EDAIIARLRTCATFRDL---LRAHGLAVRLCLSQSSYVATQIVHICNAHGRAAHAARVFA 66

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET--------TFVAVLTTC 274
            I   +    NAMI   A N   + ++E++ RM++    P+          T+  +L  C
Sbjct: 67  QIPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKAC 126

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334
                 R G  +  ++ A  G E        ++++  R G +  A K  +    G+   D
Sbjct: 127 GALAASRLGRQVHAHV-ARSGCESHAVVQNSLIEMYTRCGDLSTARKAFD----GMREKD 181

Query: 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
              W  L+SA    G++     ++  + +  +  ++  V  Y 
Sbjct: 182 VVSWNTLISAHARMGQMRRARELFYSMPDKTVVSWTALVSGYT 224


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 162/441 (36%), Positives = 264/441 (59%), Gaps = 11/441 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-----DMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           MIR Y       L++  Y  ML     +    P+ +TFP ++K+C  L    + G  VH 
Sbjct: 83  MIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLM-CYDLGKQVHG 141

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           HV KFG   +  V +SL+E Y     +  A  +F++  +RD V+W T++ G+ ++G    
Sbjct: 142 HVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRR 201

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR +FE+M ++   SW+AI++ Y+RI  + + L  FR+MQ VG++P+E  LVSVL  CA 
Sbjct: 202 ARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQ 261

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G W+H YA +    +N+ +  A+++MY+KCG +     +F+ +  +D  +W+ M
Sbjct: 262 LGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTM 321

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+A +G A++++ELF  M K+  +P+  TFV +LT C HA ++ +GL  FE+M   Y 
Sbjct: 322 IVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYN 381

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +EP +EHY C+V+LL  +G +++A + + +KM      D+ +WG+LLS+CR +G +++  
Sbjct: 382 IEPGVEHYGCLVNLLGLSGRLDQALELV-KKMP--RKPDSPIWGSLLSSCRSHGNLKIAV 438

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                L E+   D   +VL  N+Y + G WD   +++RKL+    MKK PGCS IEV+ +
Sbjct: 439 IAMEHLLELEPADTGNYVLLSNLYADLGKWD-GVSRMRKLMRSKSMKKTPGCSSIEVDNM 497

Query: 415 VEEFLAGDNRHAQAGEIYRVI 435
           V+EF +GD+    +  I RV+
Sbjct: 498 VQEFASGDDSKPFSKAICRVL 518



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 154/349 (44%), Gaps = 49/349 (14%)

Query: 33  FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS 92
           F P++K C  +  L+     +HAH+VKF   +  F+V                       
Sbjct: 17  FVPILKDCPNIVELKK----IHAHIVKFSLSQSSFLV----------------------- 49

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
                   T MVD     G+ E A  LF+ + + NA  ++A++ AY     +   +++++
Sbjct: 50  --------TKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYK 101

Query: 153 QMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           QM      E  + P++     V+ +CA L     G  VH +  ++  + N ++  ++V+M
Sbjct: 102 QMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEM 161

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y KC  +  A  VFE ++ +DA +WN +ISG    G  +++  +F+ M       T  ++
Sbjct: 162 YVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEM----QDKTIFSW 217

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE--KFIEE 325
            A+++         D L  F  M  V G+EP       V+   A+ G +E  +      +
Sbjct: 218 TAIVSGYARIGCYADALEFFRRMQMV-GIEPDEISLVSVLPDCAQLGALELGKWIHIYAD 276

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           K G L   +  V  AL+      G I+ G R++ ++ E  +  +ST ++
Sbjct: 277 KAGFL--RNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIV 323



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 107/236 (45%), Gaps = 25/236 (10%)

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           R+++ + ++  E   V +L  C ++  + +   +H++  ++ L ++  L T +VD+ +  
Sbjct: 3   RKLRALKIREMEDMFVPILKDCPNIVELKK---IHAHIVKFSLSQSSFLVTKMVDVCNHY 59

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-----KSGTQPTETT 266
           G    A  +F+G+++ +A  +NAMI     N     ++ ++ +M+     ++   P + T
Sbjct: 60  GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFT 119

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA------CVVDLLARAGMVEEAE 320
           F  V+ +C        GL  ++    V+G   +    +       +V++  +   +++A 
Sbjct: 120 FPFVVKSCA-------GLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAH 172

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +  EE    +   DA  W  L+S     G++     ++ ++ +  I  ++  V  Y
Sbjct: 173 RVFEE----MTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGY 224


>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 541

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 171/426 (40%), Positives = 257/426 (60%), Gaps = 8/426 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I G   +N    ++  Y  ML+ G  PNN TFP L+K C  L      G  +HAHV+KFG
Sbjct: 100 IEGGDDSNCCYKALMLYKQMLNKGIVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFG 159

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  D FV +SL+  +        AR +FD+   RDVV+W +MV GY + G+ E A  LF 
Sbjct: 160 FLNDVFVGNSLISLFMNFGLSKNARKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFR 219

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG----MKPNESGLVSVLTACAHLG 177
           KM  RN ++W++I+    +    KE L +F +MQ +     +KP++  + SVL+ACA LG
Sbjct: 220 KMNGRNIITWNSIITGLVQAGHAKESLEIFHEMQFLSGDDVVKPDKITIASVLSACALLG 279

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +I  G WVH+Y ++  +E +V++ TA+V+MY KCG V  A+ +F  +  KDA AW AMIS
Sbjct: 280 SIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAIEIFNDMPEKDASAWTAMIS 339

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A++G  KK+ + F  M K+G +P   TFV +L+ C+H+ +V  G   F+ M  VY +E
Sbjct: 340 VFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIE 399

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           PQ+ HYAC+VD+L+RA + +EA  F+   M      D  VWGALL  C+++G I++G +V
Sbjct: 400 PQIYHYACMVDILSRARLFDEA-LFLIRSMP--MKPDVYVWGALLGGCQMHGNIKLGEKV 456

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK-PGCSVIEVNGVVE 416
              L ++   + + ++   +IY +AG    A ++R  + E G++ K PGCS+IE+NGVV+
Sbjct: 457 AHYLIDLEPHNHAFYINLCDIYVKAGKYDAAKRIRNSMKERGIETKIPGCSIIEINGVVQ 516

Query: 417 EFLAGD 422
           EF  G+
Sbjct: 517 EFSVGE 522


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/436 (37%), Positives = 252/436 (57%), Gaps = 9/436 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL----ENFGMFVHAH 56
           +IR    +  P L++  Y  +L  G  P  +T P L+K+ + L P         + VHAH
Sbjct: 177 LIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKS-LALSPAVPGARGLALAVHAH 235

Query: 57  VVKFGFGEDPFVVSSLLEFYS-LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            VK G      V ++L+  ++ ++ ++  A  L   +   D  T+ T++  Y + G   +
Sbjct: 236 AVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTD 295

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LF++MP RNAVSWSA++  Y +  D +E L LF +MQ  G++P+++ LV VL ACA 
Sbjct: 296 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQ 355

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LG + QG WVH Y K  ++   V L TA+VDMY+KCG +  A+ VF+ +  K+  AW  M
Sbjct: 356 LGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTM 415

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+AM+G   ++LELF +M + G +P +  F+  L  CTH  +V  G  LF++M   YG
Sbjct: 416 IKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYG 475

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++P++EHY C+VDLLAR G++ EA + + EKM      DA +WGAL++ CR +  +E+  
Sbjct: 476 IKPKIEHYGCMVDLLARNGLLNEAREMV-EKMP--MKPDALIWGALMAGCRFHKNVELAE 532

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
            V +   E+       +VL  NIY  +G    A ++R L+ E G+ K PGCS +E+ GV+
Sbjct: 533 YVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVI 592

Query: 416 EEFLAGDNRHAQAGEI 431
            +F+ GD  H    EI
Sbjct: 593 HQFIVGDLSHPFIEEI 608


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 240/391 (61%), Gaps = 8/391 (2%)

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTAR-ALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           K G    P V +SLL+ Y  +  +  AR  L+      DVV+W TMV GYGK GD   AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLLDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           E+F +MPERN VSWSA++ A  R  +F E L +F +M     +P+   LVSVL ACAHLG
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225

Query: 178 AITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           A+ +G WVH Y +         N++L TA+VDMY KCG +  A  VF+G+  +D   WNA
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNA 285

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI G+AMNG  +++LELF RM++ G  P E+TF+AVL  CTH   V +G  +F++M   Y
Sbjct: 286 MIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-Y 344

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G++PQ EHY C+ DLL RAG VEEAE  +   +       A+ WGAL+S+C+++  I VG
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALL---LDMPMEPHASQWGALMSSCQMHNDINVG 401

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
            RV ++L E+   D   +V+ +N+Y   G   EA  +R+++ + G KK+ G S IE+NG+
Sbjct: 402 ERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGL 461

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
           V EF++GD RH    +IY ++    +   L+
Sbjct: 462 VHEFISGDTRHPLTRKIYALLEDIERRLQLI 492



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 36/248 (14%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG---EDPFVVS 70
           +++ +  M+   F P+      ++KAC  LG +E  G +VH ++    FG    +  + +
Sbjct: 195 ALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVER-GRWVHRYLETGSFGGRRGNLMLET 253

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
           +L++ Y     M  A  +FD    RDVV W  M+ G    G  E A E            
Sbjct: 254 ALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALE------------ 301

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
                              LFR+M + G  PNES  ++VL AC H G + +G  V    +
Sbjct: 302 -------------------LFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ 342

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSL 249
            Y ++        + D+  + G+V  A ++   +     A  W A++S   M+ D     
Sbjct: 343 DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGE 402

Query: 250 ELFDRMVK 257
            +  R+++
Sbjct: 403 RVGKRLIE 410


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 160/419 (38%), Positives = 254/419 (60%), Gaps = 4/419 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G ++      ++  Y +M      PN  T   +I +C  +  L N G   H ++ + 
Sbjct: 230 MITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDL-NLGKEFHCYIKEH 288

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ Y    ++ TAR LFD    + +V+WTTMV GY + G  + ARE+ 
Sbjct: 289 GLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREIL 348

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            K+PE++ V W+AI++   +    KE L+LF +MQ   ++P++  +V+ L+AC+ LGA+ 
Sbjct: 349 YKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALD 408

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y +R+ L  +V L TA+VDMY+KCG++  AL VFE I  ++   W A+I G+A
Sbjct: 409 VGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLA 468

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G+A+ +L  F +M+  G  P E TF+ VL+ C H  +V +G   F  MS+ + V P+L
Sbjct: 469 LHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKL 528

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+C+VDLL RAG +EEAE+ ++         DA V GAL  ACR+YG +++G R   K
Sbjct: 529 KHYSCMVDLLGRAGHLEEAEELVKNMP---MAADAAVLGALFFACRVYGNVQIGERTAFK 585

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   D   +VL  ++Y EA    EA   RKL+++ G++K PGCS++E+NG+V EF+
Sbjct: 586 LLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIVHEFV 644



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 177/402 (44%), Gaps = 79/402 (19%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLEN-FGMFVHAHVVK 59
           IRGY+++   +     Y  ML  G  +P+N+T+P L+K C   G   +  G+ V  HV+K
Sbjct: 129 IRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCC--GQYSSCLGLGVLGHVLK 186

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF  D FV ++ +       ++  A  +F+KS  RD+VTW +M+ G  K G        
Sbjct: 187 FGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRG-------- 238

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                        AI           E + ++++M+   ++PNE  ++ ++++C+ +  +
Sbjct: 239 ------------LAI-----------EAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDL 275

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G   H Y K + LE  + L  A++DMY KCG + +A  +F+ ++ K   +W  M+ G 
Sbjct: 276 NLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGY 335

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A  G    + E+  ++ +    P    + A+++ C  AK  ++ L LF  M  +  +EP 
Sbjct: 336 ARFGFLDVAREILYKIPEKSVVP----WNAIISGCVQAKQGKEALALFHEMQ-IRTIEPD 390

Query: 300 ----------------------LEHY-------------ACVVDLLARAGMVEEAEKFIE 324
                                 + HY               +VD+ A+ G +  A +  E
Sbjct: 391 KVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFE 450

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           E    +   +   W A++    ++G  +     + K+  +GI
Sbjct: 451 E----IPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGI 488



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 131/322 (40%), Gaps = 41/322 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           + A +V  G  E+ F  S L+ F +L            +S + D  T             
Sbjct: 76  IQAQMVSTGLIENGFAASRLVAFCAL-----------SESKELDYCT------------- 111

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLT 171
                 +  ++ E N  SW+A +  Y    D +    L+++M   G +KP+      +L 
Sbjct: 112 -----RILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLK 166

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            C    +   GL V  +  ++  E ++ +  A + M   CG +  A  VF     +D   
Sbjct: 167 GCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVT 226

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL---FE 288
           WN+MI+G    G A ++++++  M     +P E T + ++++C+    V+D LNL   F 
Sbjct: 227 WNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQ---VQD-LNLGKEFH 282

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
                +G+E  +     ++D+  + G +  A    +     +       W  ++     +
Sbjct: 283 CYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFD----NMAQKTLVSWTTMVLGYARF 338

Query: 349 GKIEVGNRVWRKLAEMGITDFS 370
           G ++V   +  K+ E  +  ++
Sbjct: 339 GFLDVAREILYKIPEKSVVPWN 360


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 165/436 (37%), Positives = 252/436 (57%), Gaps = 9/436 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL----ENFGMFVHAH 56
           +IR    +  P L++  Y  +L  G  P  +T P L+K+ + L P         + VHAH
Sbjct: 177 LIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKS-LALSPAVPGARGLALAVHAH 235

Query: 57  VVKFGFGEDPFVVSSLLEFYS-LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            VK G      V ++L+  ++ ++ ++  A  L   +   D  T+ T++  Y + G   +
Sbjct: 236 AVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTD 295

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LF++MP RNAVSWSA++  Y +  D +E L LF +MQ  G++P+++ LV VL ACA 
Sbjct: 296 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQ 355

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LG + QG WVH Y K  ++   V L TA+VDMY+KCG +  A+ VF+ +  K+  AW  M
Sbjct: 356 LGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTM 415

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+AM+G   ++LELF +M + G +P +  F+  L  CTH  +V  G  LF++M   YG
Sbjct: 416 IKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYG 475

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++P++EHY C+VDLLAR G++ EA + + EKM      DA +WGAL++ CR +  +E+  
Sbjct: 476 IKPKIEHYGCMVDLLARNGLLNEAREMV-EKMP--MKPDALIWGALMAGCRFHKNVELAE 532

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
            V +   E+       +VL  NIY  +G    A ++R L+ E G+ K PGCS +E+ GV+
Sbjct: 533 YVVKHWIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVI 592

Query: 416 EEFLAGDNRHAQAGEI 431
            +F+ GD  H    EI
Sbjct: 593 HQFIVGDLSHPFIEEI 608


>gi|125539857|gb|EAY86252.1| hypothetical protein OsI_07623 [Oryza sativa Indica Group]
          Length = 629

 Score =  319 bits (817), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 170/391 (43%), Positives = 240/391 (61%), Gaps = 8/391 (2%)

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTAR-ALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           K G    P V +SLL+ Y  +  +  AR  L+      DVV+W TMV GYGK GD   AR
Sbjct: 106 KCGALAHPVVTNSLLKLYCSLGLIDRARRVLYSGGAALDVVSWNTMVSGYGKGGDLGAAR 165

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           E+F +MPERN VSWSA++ A  R  +F E L +F +M     +P+   LVSVL ACAHLG
Sbjct: 166 EVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPDVVVLVSVLKACAHLG 225

Query: 178 AITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           A+ +G WVH Y +         N++L TA+VDMY KCG +  A  VF+G+  +D   WNA
Sbjct: 226 AVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNA 285

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI G+AMNG  +++LELF RM++ G  P E+TF+AVL  CTH   V +G  +F++M   Y
Sbjct: 286 MIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQD-Y 344

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G++PQ EHY C+ DLL RAG VEEAE  + +         A+ WGAL+S+C+++  I VG
Sbjct: 345 GIKPQREHYGCLADLLGRAGNVEEAEALLLDMP---MEPHASQWGALMSSCQMHNDINVG 401

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
            RV ++L E+   D   +V+ +N+Y   G   EA  +R+++ + G KK+ G S IE+NG+
Sbjct: 402 ERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMMEDRGAKKETGLSFIELNGL 461

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
           V EF++GD RH    +IY ++    +   L+
Sbjct: 462 VHEFISGDTRHPLTRKIYALLEDIERRLQLI 492



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 36/248 (14%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG---EDPFVVS 70
           +++ +  M+   F P+      ++KAC  LG +E  G +VH ++    FG    +  + +
Sbjct: 195 ALWVFDRMMREEFRPDVVVLVSVLKACAHLGAVER-GRWVHRYLETGSFGGRRGNLMLET 253

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
           +L++ Y     M  A  +FD    RDVV W  M+ G    G  E A              
Sbjct: 254 ALVDMYCKCGCMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERA-------------- 299

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
                            L LFR+M + G  PNES  ++VL AC H G + +G  V    +
Sbjct: 300 -----------------LELFRRMLQKGFMPNESTFIAVLCACTHTGRVDEGKRVFKSMQ 342

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSL 249
            Y ++        + D+  + G+V  A ++   +     A  W A++S   M+ D     
Sbjct: 343 DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHASQWGALMSSCQMHNDINVGE 402

Query: 250 ELFDRMVK 257
            +  R+++
Sbjct: 403 RVGKRLIE 410


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/439 (36%), Positives = 257/439 (58%), Gaps = 5/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y   +     +  Y  +L    E P+ +TFP + K+C  LG     G  VH H+ K
Sbjct: 79  IIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCY-LGKQVHGHLYK 137

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FG        ++L++ Y     +  A  +FD+  +RDV++W +++ GY ++G  + A+ L
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGL 197

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  M ++  VSW+A+++ Y+ I  + E +  FR+MQ  G++P+E  L+SVL +CAHLG++
Sbjct: 198 FHLMIDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSL 257

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H YA+R  L K   +  A+++MYSKCG +  A+ +FE    KD  +W+ MISG 
Sbjct: 258 ELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGY 317

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G+A ++ E F  M ++  +P   TF+ +L+ C+H  + + GL  F+ M   Y +EP+
Sbjct: 318 AYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPK 377

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C++D+LARAG +E A   +E         D+ +WG+LLS+CR  G ++V      
Sbjct: 378 IEHYGCLIDVLARAGKLERA---VEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMD 434

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L E+   D   +VL  NIY + G   + +++RK+I +  MKK PGCS+IEVN +V+EF+
Sbjct: 435 HLVEVEPDDMGNYVLLANIYADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNIVQEFV 494

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           AGDN      EI  V+  F
Sbjct: 495 AGDNSKPFWTEISLVLQLF 513



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 132/296 (44%), Gaps = 40/296 (13%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T MVD   K+GD + A  LF ++   N   +++I+ AY+  S + +V+ +++Q+    ++
Sbjct: 46  TKMVDLCDKLGDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIE 105

Query: 161 -PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
            P+      +  +CA LG+   G  VH +  ++    +V+   A++DMY K   +  A  
Sbjct: 106 FPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHK 165

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK---------------------- 257
           VF+ +S +D  +WN+++SG A  G  KK+  LF  M+                       
Sbjct: 166 VFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMISGYTGIGCYVEA 225

Query: 258 ---------SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
                    +G +P E + ++VL +C H   +  G       +   G+  Q      +++
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAHLGSLELG-KWIHMYAERRGLLKQTGVCNALIE 284

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           + ++ GM+ +A +  E+      G D   W  ++S    +G     +R +    EM
Sbjct: 285 MYSKCGMLSQAIQLFEQT----KGKDVISWSTMISGYAYHGN---AHRAFETFIEM 333


>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
 gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 548

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 161/434 (37%), Positives = 264/434 (60%), Gaps = 4/434 (0%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I+   + + P  +++ Y  +   G  P++Y+ P ++KA V L  +E  G  +H   V   
Sbjct: 94  IKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSAVE-VGRQIHTQTVSSA 152

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
              D  V +SL++ YS    +  AR LFD    +DV  W  MV GY K+G+ ++AR++F 
Sbjct: 153 LDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAGYVKVGELKSARKVFN 212

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MP+RN +SW+ ++A Y++ +   E + LFR+MQ   ++P+E  +++VL+ACA LGA+  
Sbjct: 213 EMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALEL 272

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G W+H+Y +++ L + V L  A++DMY+K G++  AL VFE +  K    W+ +I+ +A+
Sbjct: 273 GEWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALAL 332

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G   +++++F RM K+  +P E TFVA+L+ C+H  MV  G   F+ M ++Y +EP++E
Sbjct: 333 HGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIE 392

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C++DLLARAG ++EA+K + +        +A +WG+LL+A   +   E+     + L
Sbjct: 393 HYGCMIDLLARAGYLQEAQKLLHDMP---FEANAMIWGSLLAASNTHRDAELAQLALKHL 449

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
           A++   +   +VL  N Y   G   E+  VRKL+   G+KK PG SVIE+N +V EFLAG
Sbjct: 450 AKLEPGNSGNYVLLSNTYAALGKWNESGTVRKLMRNAGVKKAPGGSVIEINNIVYEFLAG 509

Query: 422 DNRHAQAGEIYRVI 435
           D   +Q  EIY V+
Sbjct: 510 DMSDSQVHEIYHVL 523



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 150/368 (40%), Gaps = 70/368 (19%)

Query: 66  PFVVSSLLEFYSLV-------HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           P + +S L+F SL+       H       +  ++ D+D +  +  +D    +G    A  
Sbjct: 18  PAIFTSSLQFTSLLSNCRHHLHLYQIHGFMLHRALDQDNLFLSQFIDACTSLGLSSYAFS 77

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F      +   ++  + A S+ S     + L+ +++  G++P+   + SVL A   L A
Sbjct: 78  IFSNKTHPDLRLYNTAIKALSKTSSPINAIWLYTRIRIDGLRPDSYSIPSVLKAVVKLSA 137

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +H+      L+ +V +AT+++ MYS CG V  A  +F+ +  KD   WNAM++G
Sbjct: 138 VEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLFDFVGFKDVALWNAMVAG 197

Query: 239 VAMNGDAK-------------------------------KSLELFDRMVKSGTQPTETTF 267
               G+ K                               +++ELF +M     +P E   
Sbjct: 198 YVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAM 257

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-- 325
           +AVL+ C     +  G     N    +G+   +  Y  ++D+ A++G +  A +  E   
Sbjct: 258 LAVLSACADLGALELG-EWIHNYIEKHGLCRIVSLYNALIDMYAKSGNIRRALEVFENMK 316

Query: 326 --------------KMGGLGGGDANV---------------WGALLSACRIYGKIEVGNR 356
                          + GLGG   ++               + A+LSAC   G ++VG  
Sbjct: 317 QKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEVTFVAILSACSHVGMVDVGRY 376

Query: 357 VWRKLAEM 364
            + ++  M
Sbjct: 377 YFDQMQSM 384



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/248 (20%), Positives = 108/248 (43%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N P  ++  +  M     EP+      ++ AC  LG LE  G ++H ++ K 
Sbjct: 225 LIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALE-LGEWIHNYIEKH 283

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ Y+    +  A  +F+    + V+TW+T++      G    A ++F
Sbjct: 284 GLCRIVSLYNALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDMF 343

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +                               M++  ++PNE   V++L+AC+H+G + 
Sbjct: 344 LR-------------------------------MEKAKVRPNEVTFVAILSACSHVGMVD 372

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            G +     +  Y +E  +     ++D+ ++ G++  A  +   +    +A  W ++++ 
Sbjct: 373 VGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHDMPFEANAMIWGSLLAA 432

Query: 239 VAMNGDAK 246
              + DA+
Sbjct: 433 SNTHRDAE 440


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 179/502 (35%), Positives = 268/502 (53%), Gaps = 67/502 (13%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           RGY    F +  VF +  M  M   PN +TFP ++K+C  +G     G  +H  V+K G 
Sbjct: 96  RGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVE-GEEIHCEVIKGGL 154

Query: 63  GEDPFVVS-------------------------------SLLEFYSLVHKMGTARALFDK 91
             + FV +                               S++  Y L +++  AR LFD 
Sbjct: 155 EGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDL 214

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENAR-------------------------------ELF 120
           +P+RDVV W  MV GY ++GD + AR                               +LF
Sbjct: 215 APERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLF 274

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAI 179
           E+MPERN  SW+ ++  Y+    F EVL  F++M   G+  PN++ LV+VL+ACA LGA+
Sbjct: 275 EEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGAL 334

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WVH YA     + ++ +  A++DMYSKCG + +A+ VFE +  KD   WN+MI G+
Sbjct: 335 DLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGL 394

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G    +L LF +M  +G +P   TF+ VL +CTH  +V +G + F +M   Y + PQ
Sbjct: 395 ATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQ 454

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDL  RAG+++ A +F++         DA +W ALL ACRIY  I++     +
Sbjct: 455 IEHYGCMVDLFGRAGLLDRAIEFVKRMP---MEADAVIWAALLGACRIYKNIDLAELALQ 511

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL  +   + + +VL  NIY + G   +  +++ L+ +TG KK PGCS+IEVN  V EF 
Sbjct: 512 KLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFY 571

Query: 420 AGDNRHAQAGEIYRVIHSFLKM 441
           + D RH+Q+ EIY V+   +K+
Sbjct: 572 SLDERHSQSKEIYGVLKGLMKL 593



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 75/139 (53%)

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           +AR LF+  P+     W+AI   Y   + ++EV+ LF +M+ + ++PN      VL +CA
Sbjct: 75  HARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCA 134

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            +GA  +G  +H    +  LE N  +AT ++D+YS    + SA  +F G+  ++  AW +
Sbjct: 135 KIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTS 194

Query: 235 MISGVAMNGDAKKSLELFD 253
           MISG  +      +  LFD
Sbjct: 195 MISGYILCNRVALARRLFD 213


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 162/434 (37%), Positives = 264/434 (60%), Gaps = 6/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G++Q  +P  ++  +  M + G  PN  T   ++ AC     L   G  V  ++ + 
Sbjct: 314 MVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNL-TLGRKVCDYIDRN 372

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  V ++ ++ +    ++  AR LFD    RDVV+WTT++DGY KM +   AR++F
Sbjct: 373 EMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIF 432

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ--EVGMKPNESGLVSVLTACAHLGA 178
           + MP ++  +W+ +++ Y +    KE L++FR++Q  + G +P++  L+S L+ACA LGA
Sbjct: 433 DSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGA 492

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G W+H Y K+  ++ N  LAT+++DMYSK G V  A+ VF  I NKD   W+AMI+G
Sbjct: 493 MDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAG 552

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AM+G  + ++ELF  M ++  +P   TF  +L  C+H+ +V +G  LF+ M  VYGV P
Sbjct: 553 LAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVP 612

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           + +HY+C+VD+L RAG +EEA KFIE   G      A+VWGALL AC I+G +E+  +  
Sbjct: 613 KTKHYSCMVDVLGRAGHLEEALKFIE---GMPLAPSASVWGALLGACCIHGNLELAEKAC 669

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            +L E+   +   +VL  N+Y + G     +++R+ + ++G+KK+ GCS IE++G V EF
Sbjct: 670 SRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEF 729

Query: 419 LAGDNRHAQAGEIY 432
           + GDN H  + +IY
Sbjct: 730 IVGDNAHPLSRDIY 743



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 184/418 (44%), Gaps = 105/418 (25%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKA-----CVILGPLENFGMFVH 54
           +IR    ++ P  SV  ++ ML D  F PN +TFP LIKA     C ++G        VH
Sbjct: 210 LIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKA------VH 263

Query: 55  AHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFD--KSPDRDVVTWTTMVDGYGKMGD 112
              +K  FG+D FV++SL+ FY+    +  A  +F+  +  ++D+V+W +MV G+ + G 
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGG- 322

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                      P++                     L LF +M+  G+ PN   +VSV++A
Sbjct: 323 ----------YPDK--------------------ALDLFERMRNEGVHPNAVTMVSVMSA 352

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH----------------- 215
           CA    +T G  V  Y  R  +  N+ +  A +DM+ KCG V                  
Sbjct: 353 CAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSW 412

Query: 216 --------------SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD--RMVKSG 259
                          A  +F+ +  KD  AWN +ISG   +G  K++L +F   ++ KSG
Sbjct: 413 TTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSG 472

Query: 260 TQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
            +P + T ++ L+ C            H  + ++ + L  N++              ++D
Sbjct: 473 ARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLA------------TSLID 520

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           + +++G VE+A     E    +G  D  VW A+++   ++G+ E    ++  + E  +
Sbjct: 521 MYSKSGDVEKA----IEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQV 574



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 3/172 (1%)

Query: 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD-FKEVLSLFRQMQEVGMKPNES 164
            +      + AR++F+++P+ N  SW+ ++ A +  SD  + VL   R + +    PN+ 
Sbjct: 182 AFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKF 241

Query: 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
               ++ A A       G  VH  A +     +V +  +++  Y+ CGH+  A  VFE I
Sbjct: 242 TFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMI 301

Query: 225 --SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             +NKD  +WN+M++G    G   K+L+LF+RM   G  P   T V+V++ C
Sbjct: 302 EGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSAC 353


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  318 bits (816), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 257/446 (57%), Gaps = 16/446 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP---------NNYTFPPLIKACVILGPLENFGM 51
           MI+ Y Q +  + +V  Y+ ML    +P         + +T+P L+KAC  L      G 
Sbjct: 79  MIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKACGGLAA-SQLGR 137

Query: 52  FVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
            VHAHV + G      V +SL+E Y+    +  AR +FD   ++D V+W T++  + +MG
Sbjct: 138 QVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMG 197

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
               ARELF  MP++  VSW+A+++ Y+ + DF   + +FRQMQ  G +P++  +V+VL 
Sbjct: 198 QMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLP 257

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA LGA+  G W+++Y  ++ +   + +  A+++MY+KCG +  AL +F G+S KD  +
Sbjct: 258 ACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVIS 317

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           W+  I G+A +G A+++++LF+ M + G   P   TFV +L+ C+HA ++ +GL  F+ M
Sbjct: 318 WSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRM 377

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYG 349
              YGVEP +EHY CVVDLL R+G ++ A   I    GG+    D  +WG+LLSACR + 
Sbjct: 378 KEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTI----GGMPIPPDGKIWGSLLSACRSHS 433

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
            ++       +L E+   D    V+  N+Y  AG        RK I     +K PGCS+I
Sbjct: 434 DVDTAVVAAERLVELEPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMI 493

Query: 410 EVNGVVEEFLAGDNRHAQAGEIYRVI 435
           EV+ VV EF+AG++   + G I  +I
Sbjct: 494 EVDNVVREFVAGEDLGPELGGIAAII 519



 Score = 45.1 bits (105), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 17/224 (7%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E   ++ L ACA    +   L  H  A R  L ++  +AT +V + +  G    A  VF 
Sbjct: 10  EDAAIARLRACATFRDL---LRAHGLAVRLCLSQSSYVATQIVHVCNGHGRAAHAARVFA 66

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET---------TFVAVLTT 273
            +   +    NAMI   A N   + ++E++ RM++    P+ +         T+  +L  
Sbjct: 67  HVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKA 126

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C      + G  +  ++ A  G E        ++++  R G +  A K  +    G+   
Sbjct: 127 CGGLAASQLGRQVHAHV-ARSGCESHAIVQNSLIEMYTRCGDLSLARKVFD----GMREK 181

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           DA  W  L+SA    G++     ++  + +  +  ++  V  Y 
Sbjct: 182 DAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYT 225


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  318 bits (815), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 168/434 (38%), Positives = 258/434 (59%), Gaps = 8/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIR + ++  P+ S   Y  +L  G   +P+NYT   L++AC  L   E  G+ VH   +
Sbjct: 77  MIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET-GLQVHGMTI 135

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF  DP V + L+  Y+ +  + +   +F+  P  D V  T MV    + GD   AR+
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARK 195

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE MPER+ ++W+A+++ Y+++ + +E L++F  MQ  G+K N   ++SVL+AC  LGA
Sbjct: 196 LFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGA 255

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W HSY +R  ++  V LAT +VD+Y+KCG +  A+ VF G+  K+   W++ ++G
Sbjct: 256 LDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG 315

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AMNG  +K LELF  M + G  P   TFV+VL  C+    V +G   F++M   +G+EP
Sbjct: 316 LAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEP 375

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           QLEHY C+VDL ARAG +E+A   I++         A VW +LL A R+Y  +E+G    
Sbjct: 376 QLEHYGCLVDLYARAGRLEDAVSIIQQMP---MKPHAAVWSSLLHASRMYKNLELGVLAS 432

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           +K+ E+   +   +VL  NIY ++  WD   + VR+ +   G++K+PGCSV+EVNG V E
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWD-NVSHVRQSMKSKGVRKQPGCSVMEVNGEVHE 491

Query: 418 FLAGDNRHAQAGEI 431
           F  GD  H +  +I
Sbjct: 492 FFVGDKSHPKYTQI 505


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 167/475 (35%), Positives = 263/475 (55%), Gaps = 61/475 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ + +    + +V  +  + + G  P+N+T+P + KA   LG +   G  V+  VVK 
Sbjct: 103 VIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVRE-GEKVYGFVVKS 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTW-------------------- 100
           G   D +V +SL++ Y+ V ++   R +F++ P RDVV+W                    
Sbjct: 162 GLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVF 221

Query: 101 ---------------TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                          T+MV GY   G  + ARELFE+ P R+ V W+A++  Y + + F 
Sbjct: 222 RQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFD 281

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + ++LFR+MQ   + P+   LV++LT                         + ++ TA++
Sbjct: 282 DAVALFREMQIKRVSPDRFTLVALLT-------------------------DAVVGTALI 316

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           +MY+KCG +  +L +F G+  KD  +W ++I G+AMNG   K+LELF  MV++G +P + 
Sbjct: 317 EMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDI 376

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           TF+ VL+ C+H  +V +G   F +M+AVY +EP+LEHY C++DLL RAG ++EAE+ IE+
Sbjct: 377 TFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEK 436

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385
                      ++GALLSACR +G +E+G RV ++L  +   D S H L  NIY  A   
Sbjct: 437 SPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRW 496

Query: 386 MEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            +  KVR+ + + G+KK PGCS +EVNG+V EFL GD  H +  EIY ++ S  K
Sbjct: 497 EDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAK 551



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 89/179 (49%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +G+   A  +F  +       ++ ++ A+++   F++ + LFRQ++E G+ P+      V
Sbjct: 79  IGNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFV 138

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
             A   LG + +G  V+ +  +  LE +  +  +++DMY++ G V +   VFE +  +D 
Sbjct: 139 FKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDV 198

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
            +WN +ISG       + ++++F ++       T   + ++++   +   + +   LFE
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE 257


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 179/502 (35%), Positives = 268/502 (53%), Gaps = 67/502 (13%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           RGY    F +  VF +  M  M   PN +TFP ++K+C  +G     G  +H  V+K G 
Sbjct: 138 RGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVE-GEEIHCEVIKGGL 196

Query: 63  GEDPFVVS-------------------------------SLLEFYSLVHKMGTARALFDK 91
             + FV +                               S++  Y L +++  AR LFD 
Sbjct: 197 EGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILCNRVALARRLFDL 256

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENAR-------------------------------ELF 120
           +P+RDVV W  MV GY ++GD + AR                               +LF
Sbjct: 257 APERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLF 316

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAI 179
           E+MPERN  SW+ ++  Y+    F EVL  F++M   G+  PN++ LV+VL+ACA LGA+
Sbjct: 317 EEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGAL 376

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WVH YA     + ++ +  A++DMYSKCG + +A+ VFE +  KD   WN+MI G+
Sbjct: 377 DLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKDLITWNSMICGL 436

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G    +L LF +M  +G +P   TF+ VL +CTH  +V +G + F +M   Y + PQ
Sbjct: 437 ATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQ 496

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDL  RAG+++ A +F++         DA +W ALL ACRIY  I++     +
Sbjct: 497 IEHYGCMVDLFGRAGLLDRAIEFVKRMP---MEADAVIWAALLGACRIYKNIDLAELALQ 553

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL  +   + + +VL  NIY + G   +  +++ L+ +TG KK PGCS+IEVN  V EF 
Sbjct: 554 KLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFY 613

Query: 420 AGDNRHAQAGEIYRVIHSFLKM 441
           + D RH+Q+ EIY V+   +K+
Sbjct: 614 SLDERHSQSKEIYGVLKGLMKL 635



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 75/139 (53%)

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           +AR LF+  P+     W+AI   Y   + ++EV+ LF +M+ + ++PN      VL +CA
Sbjct: 117 HARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCA 176

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            +GA  +G  +H    +  LE N  +AT ++D+YS    + SA  +F G+  ++  AW +
Sbjct: 177 KIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTS 236

Query: 235 MISGVAMNGDAKKSLELFD 253
           MISG  +      +  LFD
Sbjct: 237 MISGYILCNRVALARRLFD 255


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 161/430 (37%), Positives = 256/430 (59%), Gaps = 13/430 (3%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y+ +L     PN +TF  ++K+C         G  +H HV+KFG G DP+V + L++ Y+
Sbjct: 116 YVQLLSSQINPNEFTFSSILKSCST-----KSGKLIHTHVLKFGLGLDPYVATGLVDIYA 170

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               + +A+ +FD+ P+R +V+ T M+  Y K G+ E AR LF++M ER+ VSW+ ++  
Sbjct: 171 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDG 230

Query: 138 YSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           YS+     + L LF+++   G  KP+E  +V+ L+AC+ +GA+  G W+H +     +  
Sbjct: 231 YSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRL 290

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           NV + TA++DMYSKCG +  A+ VF     KD  AWNAMI+G AM+G ++ +L LFD M 
Sbjct: 291 NVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQ 350

Query: 257 K-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
             +G QPT+ TF+  L  C HA +V +G+ +FE+M   YG++P++EHY C+V LL RAG 
Sbjct: 351 GITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 410

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           ++ A + I+         D+ +W ++L +C+++G+  +G  +   L    I++   +VL 
Sbjct: 411 LKRAYEIIKNMN---MEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLL 467

Query: 376 YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            NIY   G      KVR L+ E G+ K+PG S IE++  V EF AGD  H ++ EIY ++
Sbjct: 468 SNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTML 527

Query: 436 HSFLKMSNLV 445
               KMS  +
Sbjct: 528 R---KMSERI 534



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 131/298 (43%), Gaps = 51/298 (17%)

Query: 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
            Y   G   ++  LF +  + +   ++A +   S      +   L+ Q+    + PNE  
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHL------------------------------- 194
             S+L +C    +   G  +H++  ++ L                               
Sbjct: 131 FSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           E++++ +TA++  Y+K G+V +A ++F+ +  +D  +WN MI G + +G    +L LF +
Sbjct: 187 ERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQK 246

Query: 255 MVKSG-TQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYAC--VVDL 309
           ++  G  +P E T VA L+ C+    +  G  +++F N S +     +L    C  ++D+
Sbjct: 247 LLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRI-----RLNVKVCTALIDM 301

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
            ++ G +EEA     +        D   W A+++   ++G  +   R++ ++   GIT
Sbjct: 302 YSKCGSLEEAVLVFNDT----PRKDIVAWNAMITGYAMHGYSQDALRLFDEM--QGIT 353



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 22/158 (13%)

Query: 178 AITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           ++ + L +H+   R++L    +  +L   +   Y+  G +  +L++F    + D   + A
Sbjct: 39  SVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 98

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-------HAKMVRDGLNLF 287
            I+  ++NG   ++  L+ +++ S   P E TF ++L +C+       H  +++ GL   
Sbjct: 99  AINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTHVLKFGL--- 155

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
                  G++P +     +VD+ A+ G V  A+K  + 
Sbjct: 156 -------GLDPYVA--TGLVDIYAKGGDVVSAQKVFDR 184


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 260/443 (58%), Gaps = 12/443 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP-------NNYTFPPLIKACVILGPLENFGMFV 53
           MI+ Y Q +    ++  Y+ ML     P       + +T+P L+KAC  L  L+  G  V
Sbjct: 82  MIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKACGGLMALD-LGKQV 140

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H HVV+ G   +  V +SL+E Y+    +  AR +FD   +RDVV+W T++  + ++G  
Sbjct: 141 HGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERDVVSWNTVISAHARLGQM 200

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             AR +F  MP++  VSW+A+++ Y+   DF   +  FR MQ  G +P++  +V+VL AC
Sbjct: 201 RKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPAC 260

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+  G W+++Y  R+ + +   +  A+V+MY+KCG +  AL +F G++ KD  +W+
Sbjct: 261 AQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWS 320

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            M+ G+A +G A+++++LF  M + GT +P   TFV +L+ C+HA ++ +GL+ F+ M+ 
Sbjct: 321 TMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACSHAGLLDEGLDYFDRMND 380

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           VYG+EP +EHY C+VDLL R+G ++     I +        DA +WG++L+ACR +G ++
Sbjct: 381 VYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMP---LPADAKIWGSVLNACRSHGDVD 437

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
                  +L  +   D    V+  N+Y  A    E    RK I    M+K PGCS+IEV+
Sbjct: 438 TAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSRSMRKTPGCSLIEVD 497

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
            VV+EF+AG++   + G +  V+
Sbjct: 498 NVVQEFVAGEDLKPEFGGLSGVL 520



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/364 (18%), Positives = 139/364 (38%), Gaps = 72/364 (19%)

Query: 37  IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRD 96
           ++AC     L    + VHAH V+    +  ++ + ++   +   ++  A  +F +  + +
Sbjct: 20  LRACASFRDL----LRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFSQVREPN 75

Query: 97  VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
           +     M+  Y +     +A  ++ +M  R    W +          F            
Sbjct: 76  LHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPF------------ 123

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
                       +L AC  L A+  G  VH +  R   E N I+  ++++MY++ G +  
Sbjct: 124 ------------LLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVL 171

Query: 217 ALSVFEGISNKDAGAWN-------------------------------AMISGVAMNGDA 245
           A  VF+G+  +D  +WN                               A++SG    GD 
Sbjct: 172 ARKVFDGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDF 231

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL--EHY 303
             ++E F  M   G +P + + VAVL  C     +  G  ++      Y    Q+  E Y
Sbjct: 232 SGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIY-----AYCNRHQMLRETY 286

Query: 304 AC--VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
            C  +V++ A+ G +++A +       G+   D   W  ++     +G+ +   +++ ++
Sbjct: 287 VCNALVEMYAKCGCIDQALQLFN----GMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEM 342

Query: 362 AEMG 365
              G
Sbjct: 343 ERQG 346



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 102/245 (41%), Gaps = 27/245 (11%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E  +++ L ACA    +   L VH++A R  L ++  LAT +V + +  G V  A  VF 
Sbjct: 13  EDAVMASLRACASFRDL---LRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRVFS 69

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-------SGTQPTETTFVAVLTTCT 275
            +   +    NAMI   A N     ++ ++ RM++       S T     T+  +L  C 
Sbjct: 70  QVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPFLLKAC- 128

Query: 276 HAKMVRDGLNLFENMSAVYG--VEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGG 329
                  GL   +    V+G  V    E  A V    +++  RAG +  A K  +    G
Sbjct: 129 ------GGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVFD----G 178

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN 389
           +   D   W  ++SA    G++     V+  + +  +  ++  V  Y    +    +EA 
Sbjct: 179 MQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAF 238

Query: 390 KVRKL 394
           ++ ++
Sbjct: 239 RLMQM 243


>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
          Length = 436

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 163/423 (38%), Positives = 249/423 (58%), Gaps = 7/423 (1%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G  P+NY+FP ++KAC  L  L   G  +H+  +K G   D FV ++L+  +S   
Sbjct: 1   MLRNGTLPDNYSFPFVLKACARLSLLHK-GREIHSSTLKLGVHLDVFVQNALISAFSSCG 59

Query: 81  KMGTARALFDKSPD--RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
            +  ARA+FD  P   RDVV+W +M+ GY +   +E A ++F+++P RN V W++++A Y
Sbjct: 60  AVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGY 119

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV 198
           ++   FKE + LFR+MQ  G   + + +  VL+AC H GA+ QG W+H Y +R  +E ++
Sbjct: 120 AQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDL 179

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VK 257
               A++ MYSKCG +  AL +F G++  D  +W+A+ISG+AMNG++ K+L LF +M + 
Sbjct: 180 NARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMI 239

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           S  +P E TF+ VL  C H   V  GL  F  M+ +Y + P +EHY C+VDLL RA ++ 
Sbjct: 240 SDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLV 299

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EAEKFI          D  +W +LL ACR +G IE+     +++ E+        VL  N
Sbjct: 300 EAEKFIRTLP---IQPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSN 356

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +Y  A    +  +VRK ++   +KK+PGCS +E++G+V E    D  H + G IY  + S
Sbjct: 357 VYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHELFVADRSHPEMGAIYETMIS 416

Query: 438 FLK 440
             K
Sbjct: 417 INK 419



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 34/212 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q++  K ++  + +M   GF  +  T   ++ AC   G L   G ++H +  + 
Sbjct: 115 MIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQ-GRWIHLYCER- 172

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                          S + D+     ++  Y K GD + A E+F
Sbjct: 173 ------------------------------NSIEMDLNARNALIGMYSKCGDIQKALEIF 202

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
             + + +  SWSA+++  +   +  + L LF QM+ +  ++PNE   + VL AC H G +
Sbjct: 203 HGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFV 262

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSK 210
            +GL + ++  + Y+L   +     +VD+  +
Sbjct: 263 DKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGR 294


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 257/444 (57%), Gaps = 8/444 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY        S   Y  M   G  P ++TF  L KAC     ++  G  VHA  +  
Sbjct: 113 MIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMD-LGKQVHAQTILI 171

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G F  D +V +S+++ Y     +G AR +FD+  +RDVV+WT ++  Y K GD E+A  L
Sbjct: 172 GGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGL 231

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ +P ++ V+W+A++  Y++    KE L  F++MQ+VGM+ +E  L  V++ACA LGA+
Sbjct: 232 FDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAV 291

Query: 180 TQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
               W+   A+R  +    NV++ +A++DMYSKCG    A  VFE +  ++  ++++MI 
Sbjct: 292 KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMIL 351

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G AM+G A  +L+LF  M+K+  +P + TF+ +L+ C+HA +V  G  LF  M   +GV 
Sbjct: 352 GYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVA 411

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P  +HYAC+VDLL RAG +EEA   ++       GG   VWGALL ACRI+G  ++    
Sbjct: 412 PSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG---VWGALLGACRIHGNPDIAQIA 468

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE-VNGVVE 416
             +L ++       ++L  NIY  AG   E +K+RK+I E G KK PGCS  E  NG + 
Sbjct: 469 ANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIH 528

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLK 440
           +F AGD  H ++ EI + +   ++
Sbjct: 529 DFFAGDTTHPRSSEIRQALKQLIE 552



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 146/343 (42%), Gaps = 40/343 (11%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPL--------------IKACVILGPLENFGMFVH 54
           N   +S   +L  L     PN   FP L              +  C +   ++     VH
Sbjct: 7   NLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQ----VH 62

Query: 55  AHVVKFGFGEDPFVVSSLLEFYSLVH-KMGTARAL-FDKSPDRDVVTWTTMVDGYGKMGD 112
           AH+++ G  +  +V++ L+   + V   MG+   L F +    +   WT M+ GY   G 
Sbjct: 63  AHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGL 122

Query: 113 FENARELFEKMPERNAV-----SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE---- 163
              +   + +M  R+ V     ++SA+  A     +      +  Q   +G   ++    
Sbjct: 123 LSESTNFYTRM-RRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVG 181

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           + ++ +   C  LG   +     S       E++V+  T ++  Y+K G + SA  +F+ 
Sbjct: 182 NSMIDLYVKCGFLGCARKVFDEMS-------ERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           + +KD  AW AM++G A NG  K++LE F +M   G +  E T   V++ C     V+  
Sbjct: 235 LPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 284 LNLFENMSAVYGVEP--QLEHYACVVDLLARAGMVEEAEKFIE 324
            N   +++   G  P   +   + ++D+ ++ G  +EA K  E
Sbjct: 295 -NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  317 bits (813), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 163/428 (38%), Positives = 258/428 (60%), Gaps = 22/428 (5%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           + D   +PN +TFP ++KAC     L   G  +H  +VKFGF ED FV+S+L+  Y +  
Sbjct: 113 LCDGRVKPNRFTFPSVLKACARASRLRE-GKQIHGLIVKFGFHEDEFVISNLVRMYVMCA 171

Query: 81  KMGTARALFDKS----------------PDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
            M  A +LF K+                 D +VV W  M+DG  ++GD ++A+ LF++MP
Sbjct: 172 VMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP 231

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           +R+ VSW+ +++ Y++   F E ++LF++MQ   + PN   LVSVL A A +GA+  G W
Sbjct: 232 QRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKW 291

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H YA +  +E + +L +A+VDMYSKCG +  AL VFE +  ++A  W+A+I   AM+G 
Sbjct: 292 IHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGR 351

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           A+ ++  F  M K+G  P +  ++ +L+ C+HA +V +G + F +M  V G++P++EHY 
Sbjct: 352 AEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG 411

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C+VDLL RAG +EEAE+ I          D  +W ALL AC+++  +++G RV   L E+
Sbjct: 412 CMVDLLGRAGHLEEAEELIRNMP---IEPDDVIWKALLGACKMHKNLKMGERVAETLMEL 468

Query: 365 GITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
              D  ++V   N+Y   G W+  A +VR  +    ++K PGCS IE++G++ EFL  D+
Sbjct: 469 APHDSGSYVALSNLYASLGNWEAVA-RVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDD 527

Query: 424 RHAQAGEI 431
            H++A EI
Sbjct: 528 SHSKAKEI 535



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 167/374 (44%), Gaps = 43/374 (11%)

Query: 26  FEPN-NYTF---PPLI-----KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           + PN  + F   PPLI      +C     L+     +HA  +K G  +DP   + +++F 
Sbjct: 6   YNPNRTFNFSPQPPLILSKPFTSCKTPRDLKQ----LHAIFIKTGQIQDPLTAAEVIKFC 61

Query: 77  SLVHK-MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE---LFEKM-----PERN 127
           +   + +  ARA+F + P+ +   W T++    +  D     E   LF  M      + N
Sbjct: 62  AFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFSAMLCDGRVKPN 121

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE---SGLVSVLTACAHL----GAIT 180
             ++ +++ A +R S  +E   +   + + G   +E   S LV +   CA +        
Sbjct: 122 RFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 181 QGLWVHSYAKRYHLEK-----NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           + +     + +  L+K     NV+L   ++D   + G + SA ++F+ +  +   +WN M
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVM 241

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAV 293
           ISG A NG   +++ LF  M  S   P   T V+VL        +  G  ++L+   + +
Sbjct: 242 ISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKI 301

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
             ++  L   + +VD+ ++ G ++EA +  E     L   +A  W A++ A  ++G+ E 
Sbjct: 302 -EIDDVLG--SALVDMYSKCGSIDEALQVFET----LPKRNAITWSAIIGAFAMHGRAED 354

Query: 354 GNRVWRKLAEMGIT 367
               +  + + G+T
Sbjct: 355 AIIHFHLMGKAGVT 368



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q      ++  + +M     +PN  T   ++ A   +G LE  G ++H +  K 
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALE-LGKWIHLYAGKN 299

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  + S+L++ YS    +  A  +F+  P R+ +TW+ ++  +   G  E+A    
Sbjct: 300 KIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDA---- 355

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      +  F  M + G+ PN+   + +L+AC+H G + 
Sbjct: 356 ---------------------------IIHFHLMGKAGVTPNDVAYIGILSACSHAGLVE 388

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G    S+  K   L+  +     +VD+  + GH+  A  +   +    D   W A++  
Sbjct: 389 EGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGA 448

Query: 239 VAMNGDAK 246
             M+ + K
Sbjct: 449 CKMHKNLK 456


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  317 bits (812), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 167/434 (38%), Positives = 254/434 (58%), Gaps = 13/434 (2%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P LS+  YL M      P+ +TFP L+++  I  P  + G  +HA ++  G   DPFV +
Sbjct: 46  PALSL--YLRMRLHAVLPDLHTFPFLLQS--INTP--HRGRQLHAQILLLGLANDPFVQT 99

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
           SL+  YS       AR  FD+    D+ +W  ++    K G    AR+LF++MPE+N +S
Sbjct: 100 SLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVIS 159

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEV---GMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           WS ++  Y    ++K  LSLFR +Q +    ++PNE  + SVL+ACA LGA+  G WVH+
Sbjct: 160 WSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHA 219

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAK 246
           Y  +  ++ +V+L T+++DMY+KCG +  A  +F+ +   KD  AW+AMI+  +M+G ++
Sbjct: 220 YIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSE 279

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
           + LELF RMV  G +P   TFVAVL  C H  +V +G   F+ M   YGV P ++HY C+
Sbjct: 280 ECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCM 339

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           VDL +RAG +E+A   ++         D  +WGALL+  RI+G +E       KL E+  
Sbjct: 340 VDLYSRAGRIEDAWNVVKSMP---MEPDVMIWGALLNGARIHGDVETCEIAITKLLELDP 396

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
            + S +VL  N+Y + G   E   +R L+   G+KK PGCS++EV+GV+ EF AGDN H 
Sbjct: 397 ANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHP 456

Query: 427 QAGEIYRVIHSFLK 440
           +   +Y ++   +K
Sbjct: 457 ELLNLYVMLDEIMK 470


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  317 bits (812), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 265/442 (59%), Gaps = 10/442 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLEN--FGMFVHAHVV 58
           +I G+ ++   +LS   ++DM+  G  P   T+  ++ AC   G  +    GM VH  VV
Sbjct: 94  LISGHRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSAC---GKDKYIWLGMQVHKCVV 150

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
             G   D  V ++L++ Y+   +M  A  LF+    R+ V+WT+++ G+ ++G  + AR 
Sbjct: 151 ASGVLPDLKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQART 210

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+ MPER+ VSW+A++  Y +   F+E L +FR+MQ   ++ +E  +VSV+TACA LGA
Sbjct: 211 LFDCMPERDTVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGA 270

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G W   Y  R+ ++ +  +  A+VDMYSKCG +  AL VF+ +  +D   W A+I G
Sbjct: 271 LETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILG 330

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A+NG  ++++ +F RM++    P E TF+ VLT CTHA +V  G + F +M+  YG+ P
Sbjct: 331 LAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAP 390

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRV 357
            + H+ C++DLL RAG ++EA     E +G +    ++ +WG LL+ACR++G  E+G   
Sbjct: 391 NVMHFGCLIDLLGRAGKLKEA----LETIGNMPMRPNSAIWGTLLAACRVHGNSEIGQLA 446

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
              L E+   +   ++L  N+Y ++    +  ++R++I E G+KK+PGCS+IE+NG + E
Sbjct: 447 AEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIMEKGIKKEPGCSLIEMNGTIHE 506

Query: 418 FLAGDNRHAQAGEIYRVIHSFL 439
           F+AGD  H  + EIY  +   L
Sbjct: 507 FIAGDRSHPMSKEIYSKLDKVL 528



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 121/274 (44%), Gaps = 32/274 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y+ ML  G  P+ YTFPPL+KA          G  VHAHVVKFG   +  V SSL+  Y+
Sbjct: 6   YVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVLMYA 65

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                  AR L D  P R               GD                V W+A+++ 
Sbjct: 66  ARGDGAVARTLLDAWPARG--------------GD--------------TPVVWNALISG 97

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           + R   F+     F  M   G+ P     ++VL+AC     I  G+ VH       +  +
Sbjct: 98  HRRSRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPD 157

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +  A++DMY++C  + +A  +FEG+  ++  +W ++ISG    G   ++  LFD M +
Sbjct: 158 LKVGNALIDMYAECSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPE 217

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
             T     ++ A++     A   R+ L +F  M 
Sbjct: 218 RDT----VSWTAMIDGYVQAGQFREALEMFREMQ 247


>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 551

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 160/419 (38%), Positives = 254/419 (60%), Gaps = 5/419 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +L M      P+ +++P  +KAC  L  L +    +H+ V KFGF  D +V++SL+  YS
Sbjct: 125 FLQMRRFSVPPDFHSYPFALKACAHLRVL-SLAQCLHSQVFKFGFVSDLYVINSLIHVYS 183

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           L   +  A  +FD+S DRDVV++  +VDG+ K G+F  ARE+F+ MP R++VSW +++A 
Sbjct: 184 LFDCLNYACQVFDESSDRDVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAG 243

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y++ S   E + LF  M  + ++P+   LVS L+ACA LG + +G  +H Y K+  ++ +
Sbjct: 244 YAQGSYCNEAIGLFDLMMGLKLEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQAD 303

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             L+T +VD Y+K G + +A+ VFE   +K    WNAM+ G+AM+G++   L  F RM++
Sbjct: 304 SFLSTGLVDFYAKSGCIDTAIKVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMME 363

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G +P   +F+ VL  C+H  +V +   LF+ M ++YGV  +L+HY C+ DLLARAG+++
Sbjct: 364 AGIKPDGISFLGVLVGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIK 423

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA   +E   G   GGD  VW  LL  CRI+G IE+  +  +++ E+   D   + +  N
Sbjct: 424 EA---VELTKGLPMGGDIFVWSGLLGGCRIHGNIEIAEQAAKQVMELKPEDGGVYSILAN 480

Query: 378 IYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           +Y  A  W+      R + S   +KK  G S I++ G+  EFLAG++ HAQ+ EIY V+
Sbjct: 481 VYANADRWEDVVKIRRSMSSNRAVKKNAGRSSIQLGGLTHEFLAGESLHAQSSEIYMVL 539



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 116/260 (44%), Gaps = 41/260 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q ++   ++  +  M+ +  EP+N      + AC  LG LE  G  +H ++ K 
Sbjct: 240 LIAGYAQGSYCNEAIGLFDLMMGLKLEPDNIALVSALSACAQLGELEK-GKQIHDYIKKN 298

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D F+ + L++FY+    + TA  +F+ SPD+ ++TW  M+ G    G   N+  L 
Sbjct: 299 RIQADSFLSTGLVDFYAKSGCIDTAIKVFELSPDKSLITWNAMLIGIAMHG---NSHLL- 354

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L+ F +M E G+KP+    + VL  C+H G + 
Sbjct: 355 ---------------------------LNYFSRMMEAGIKPDGISFLGVLVGCSHGGLVD 387

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +   +    +  Y + + +     + D+ ++ G +  A+ + +G+    D   W+ ++ G
Sbjct: 388 EAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMGGDIFVWSGLLGG 447

Query: 239 VAMNGD-------AKKSLEL 251
             ++G+       AK+ +EL
Sbjct: 448 CRIHGNIEIAEQAAKQVMEL 467



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/279 (18%), Positives = 111/279 (39%), Gaps = 38/279 (13%)

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ +   +   ++ I+  ++  S     L  F QM+   + P+       L ACAHL  +
Sbjct: 94  FDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFALKACAHLRVL 153

Query: 180 TQGLWVHSYAKRYHL-------------------------------EKNVILATAVVDMY 208
           +    +HS   ++                                 +++V+   A+VD +
Sbjct: 154 SLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVVSYNALVDGF 213

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
            K G    A  +F+ +  +D+ +W ++I+G A      +++ LFD M+    +P     V
Sbjct: 214 VKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLKLEPDNIALV 273

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           + L+ C     +  G  + + +     ++        +VD  A++G ++ A K  E    
Sbjct: 274 SALSACAQLGELEKGKQIHDYIKK-NRIQADSFLSTGLVDFYAKSGCIDTAIKVFE---- 328

Query: 329 GLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            L    + + W A+L    ++G   +    + ++ E GI
Sbjct: 329 -LSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGI 366


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/430 (37%), Positives = 259/430 (60%), Gaps = 9/430 (2%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           PK S+F Y ++   G  P++Y+FP  +KA      ++  G  +H+  ++FG   D  V++
Sbjct: 59  PKASIFLYNNIQLAGLRPDSYSFPFALKAVTRFSSIQT-GRQLHSQSIRFGLHSDLHVLT 117

Query: 71  SLLEFYSLVHK--MGTARALFD--KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER 126
           + ++ YS      +  AR +FD       DV  W  M++GY K GD  NAR+LFE+MP+R
Sbjct: 118 AFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQR 177

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           N +SW+A++  Y++ +   + ++LFR+MQ   ++P+E  ++  LTACA LGA+  G W+ 
Sbjct: 178 NVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIR 237

Query: 187 SYAKRYHL-EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
            Y  R  L   N+ L  A++DMY+K G + SAL VFE +++K    W  MI+G+A++G  
Sbjct: 238 HYIDRLGLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLG 297

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
            ++LE+F RM ++  +P + TF+A+L+ C+H  +V+ G   F  M + YG+EP++EHY C
Sbjct: 298 TEALEMFSRMERARVKPNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGC 357

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++DLL RAG ++EA+  + +        +A +WG+LL+AC  +G  E+G    + L E+ 
Sbjct: 358 MIDLLGRAGHLKEAQTLLAQMP---FEPNAVIWGSLLAACNTHGDPELGELALQHLLELE 414

Query: 366 ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
             +   + L  NIY   G   E+  VRK++ + G+KK PG S+IEVN  V EF+AG+  H
Sbjct: 415 PDNSGNYALLSNIYASRGRWNESRVVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISH 474

Query: 426 AQAGEIYRVI 435
           +Q   I  V+
Sbjct: 475 SQFDRIQEVL 484



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 110/249 (44%), Gaps = 35/249 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY QAN P  ++  +  M     EP+       + AC  LG LE  G ++  ++ + 
Sbjct: 185 LITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALE-LGEWIRHYIDRL 243

Query: 61  GFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G       + ++L++ Y+    + +A  +F+    + ++TWTTM+ G    G    A E+
Sbjct: 244 GLLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEM 303

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M ER  V                              KPN+   +++L+AC+H+G +
Sbjct: 304 FSRM-ERARV------------------------------KPNDITFIAILSACSHVGLV 332

Query: 180 TQGLW-VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
             G W  +    RY +E  +     ++D+  + GH+  A ++   +    +A  W ++++
Sbjct: 333 QTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQMPFEPNAVIWGSLLA 392

Query: 238 GVAMNGDAK 246
               +GD +
Sbjct: 393 ACNTHGDPE 401


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 162/431 (37%), Positives = 249/431 (57%), Gaps = 13/431 (3%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           YL M +    P+ +TFP L+ +     PL    G   HA ++ FG  +DPFV +SLL  Y
Sbjct: 50  YLRMRNHRVSPDFHTFPFLLPS--FHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY 107

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           S    + +A+ +FD S  +D+  W ++V+ Y K G  ++AR+LF++MPERN +SWS ++ 
Sbjct: 108 SSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLIN 167

Query: 137 AYSRISDFKEVLSLFRQMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
            Y     +KE L LFR+MQ     E  ++PNE  + +VL+AC  LGA+ QG WVH+Y  +
Sbjct: 168 GYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDK 227

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLE 250
           YH+E +++L TA++DMY+KCG +  A  VF  + S KD  A++AMI  +AM G   +  +
Sbjct: 228 YHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQ 287

Query: 251 LFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           LF  M  S    P   TFV +L  C H  ++ +G + F+ M   +G+ P ++HY C+VDL
Sbjct: 288 LFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDL 347

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
             R+G+++EAE FI          D  +WG+LLS  R+ G I+      ++L E+   + 
Sbjct: 348 YGRSGLIKEAESFIASMP---MEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNS 404

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             +VL  N+Y + G  ME   +R  +   G+ K PGCS +EV GVV EF+ GD    ++ 
Sbjct: 405 GAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESE 464

Query: 430 EIYRVIHSFLK 440
            IY ++   ++
Sbjct: 465 RIYAMLDEIMQ 475


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 165/433 (38%), Positives = 254/433 (58%), Gaps = 7/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++ +     ++  Y  ML     P+NY    ++KAC     L   G  VH+  +K 
Sbjct: 118 LIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALRE-GREVHSRALKL 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V   ++E Y    ++G AR +F++ P+ DVV  T M+  Y   G  E A  +F
Sbjct: 177 GFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVF 235

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++  ++ V W+A++  + R  +    L  FR MQ   ++PNE  +V VL+AC+ LGA+ 
Sbjct: 236 SRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALE 295

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHSY +++ +E N+ +  A+++MYS+CG +  A +VF+ + ++D   +N MISG++
Sbjct: 296 IGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLS 355

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           MNG +++++ELF  MV    +PT  TFV VL  C+H  +V  G  +F +M+  Y VEPQ+
Sbjct: 356 MNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQI 415

Query: 301 EHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           EHY C+VDLL R G +EEA   I   KM      D  + G LLSAC+++  +E+G +V +
Sbjct: 416 EHYGCMVDLLGRVGRLEEAYDLIRTMKM----TPDHIMLGTLLSACKMHKNLELGEQVAK 471

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L + G  D  T+VL  ++Y  +G   EA +VR  + E GM+K+PGCS IEVN  + EFL
Sbjct: 472 ELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFL 531

Query: 420 AGDNRHAQAGEIY 432
            GD RH Q   IY
Sbjct: 532 LGDLRHPQKERIY 544



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 143/316 (45%), Gaps = 24/316 (7%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +++ G  +DPF+V  LL   S  H +  A  +F  + + +V  +T ++DG+   G+
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG------- 165
           +  A +L+ +M   + +  + +MA+  +    +  L   R++    +K   S        
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLR 187

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRY--HLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           ++ +   C  LG           A+R    + ++V+ +T ++  YS  G V  A +VF  
Sbjct: 188 IMELYGKCGELGD----------ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSR 237

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +  KD   W AMI G   N +  ++LE F  M     +P E T V VL+ C+    +  G
Sbjct: 238 VRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 297

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
             +   M   + +E  L     ++++ +R G ++EA+   +E    +   D   +  ++S
Sbjct: 298 RWVHSYMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDE----MKDRDVITYNTMIS 352

Query: 344 ACRIYGKIEVGNRVWR 359
              + GK      ++R
Sbjct: 353 GLSMNGKSRQAIELFR 368



 Score = 45.8 bits (107), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           ++  ++S+L    H   I Q L +H+   R    ++  +   ++   SKC  +  A  +F
Sbjct: 48  DQKQIISLLQRSRH---INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 104

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           +   N +   + A+I G   +G+  ++++L+ RM+     P      ++L  C     +R
Sbjct: 105 QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 164

Query: 282 DG 283
           +G
Sbjct: 165 EG 166


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 257/444 (57%), Gaps = 8/444 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY        S   Y  M   G  P ++TF  L KAC     ++  G  VHA  +  
Sbjct: 113 MIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMD-LGKQVHAQTILI 171

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G F  D +V +S+++ Y     +G AR +FD+  +RDVV+WT ++  Y K GD E+A  L
Sbjct: 172 GGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGL 231

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ +P ++ V+W+A++  Y++    KE L  F++MQ+VGM+ +E  L  V++ACA LGA+
Sbjct: 232 FDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAV 291

Query: 180 TQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
               W+   A+R  +    NV++ +A++DMYSKCG    A  VFE +  ++  ++++MI 
Sbjct: 292 KHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMIL 351

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G AM+G A  +L+LF  M+K+  +P + TF+ +L+ C+HA +V  G  LF  M   +GV 
Sbjct: 352 GYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVA 411

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P  +HYAC+VDLL RAG +EEA   ++       GG   VWGALL ACRI+G  ++    
Sbjct: 412 PSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGG---VWGALLGACRIHGNPDIAQIA 468

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE-VNGVVE 416
             +L ++       ++L  NIY  AG   E +K+RK+I E G KK PGCS  E  NG + 
Sbjct: 469 ANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIH 528

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLK 440
           +F AGD  H ++ EI + +   ++
Sbjct: 529 DFFAGDTTHPRSSEIRQALKQLIE 552



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 145/343 (42%), Gaps = 40/343 (11%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPL--------------IKACVILGPLENFGMFVH 54
           N   +S   +L  L     PN   FP L              +  C +   ++     VH
Sbjct: 7   NLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKLLEWRLMSILHDCTLFSQIKQ----VH 62

Query: 55  AHVVKFGFGEDPFVVSSLLEFYSLVH-KMGTARAL-FDKSPDRDVVTWTTMVDGYGKMGD 112
           AH+++ G  +  +V++ L+   + V   MG+   L F +    +   WT M+ GY   G 
Sbjct: 63  AHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGL 122

Query: 113 FENARELFEKMPERNAV-----SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE---- 163
              +   + +M  R+ V     ++SA+  A     +      +  Q   +G   ++    
Sbjct: 123 LSESTNFYTRM-RRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVG 181

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           + ++ +   C  LG   +     S       E++V+  T ++  Y+K G + SA  +F+ 
Sbjct: 182 NSMIDLYVKCGFLGCARKVFDEMS-------ERDVVSWTELIVAYAKYGDMESASGLFDD 234

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +  KD  AW AM++G A NG  K++LE F +M   G +  E T   V++ C     V+  
Sbjct: 235 LPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHA 294

Query: 284 LNLFENMSAVYGVEP--QLEHYACVVDLLARAGMVEEAEKFIE 324
            N   +++   G  P   +   + ++D+ ++ G  +EA K  E
Sbjct: 295 -NWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFE 336


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 161/445 (36%), Positives = 261/445 (58%), Gaps = 19/445 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++  +   ++  Y +M   G +P+  T   ++ +C  L  L+  G   H ++ + 
Sbjct: 151 MINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLD-LGRESHCYIEEN 209

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ Y     + +AR LFD   ++ +V+WTTM               LF
Sbjct: 210 GLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTM---------------LF 254

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP+++ V W+A++  Y   +  KE L+LF +MQ + + P+E  +VS L+AC+ LGA+ 
Sbjct: 255 DEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALD 314

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y +++ L  NV L TA++DMY+KCG +  A+ VF+ +  +++  W A+ISG+A
Sbjct: 315 VGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLA 374

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G+A  ++  F  M+ +   P E TF+ +L+ C H  +V +G   F  MS+ + + P+L
Sbjct: 375 LHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKL 434

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+C+VDLL RAG++EEAE+ I+         DA VWGAL  ACRI+G + +G R   K
Sbjct: 435 KHYSCMVDLLGRAGLLEEAEELIKSMP---IEADAVVWGALFFACRIHGNVLMGERAASK 491

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L +M   D   +VL  N+Y EA    EA K RKL+ + G++K PGCS IEVNG+V EF+ 
Sbjct: 492 LLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCSSIEVNGIVYEFIV 551

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
            D  H Q+ +IY  +    +   LV
Sbjct: 552 RDKSHPQSEQIYECLIQLTRQLELV 576



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 105/366 (28%), Positives = 177/366 (48%), Gaps = 54/366 (14%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           IRG++ +  P+ +V  Y  +L   G +P+NYT+P L KAC  L  L   G  +  HV+  
Sbjct: 50  IRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS-LIRMGSEILGHVLHL 108

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV ++++        +  AR +FDKS  RD+V+W +M++GY + G         
Sbjct: 109 GFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG--------- 159

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                     W     AY       E L+ +R+M+  G+KP+E  ++ V+++CA L  + 
Sbjct: 160 ----------W-----AY-------EALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLD 197

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-------------- 226
            G   H Y +   L+  V LA A++DMY KCG++ SA  +F+ ++N              
Sbjct: 198 LGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEM 257

Query: 227 --KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             KD   WNAMI G       K++L LF+ M      P E T V+ L+ C+    +  G+
Sbjct: 258 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI 317

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +   +   + +   +     ++D+ A+ G + +A +  +E    L G ++  W A++S 
Sbjct: 318 WIHHYIEK-HELSLNVALGTALIDMYAKCGKITKAIQVFQE----LPGRNSLTWTAIISG 372

Query: 345 CRIYGK 350
             ++G 
Sbjct: 373 LALHGN 378



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 93/203 (45%), Gaps = 10/203 (4%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           N  SW+  +  +    + +E + L+ R +Q  G KP+      +  ACA L  I  G  +
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
             +      + ++ ++ AV+ +   CG +  A  +F+    +D  +WN+MI+G    G A
Sbjct: 102 LGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWA 161

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN----LFENMSAVYGVEPQLE 301
            ++L  +  M   G +P E T + V+++C   + +  G      + EN     G++  + 
Sbjct: 162 YEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEEN-----GLKLTVP 216

Query: 302 HYACVVDLLARAGMVEEAEKFIE 324
               ++D+  + G +E A K  +
Sbjct: 217 LANALMDMYMKCGNLESARKLFD 239


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/439 (37%), Positives = 254/439 (57%), Gaps = 34/439 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY++  F +  V  + +M     + +  T   ++ +C  LG L   G  +H ++++ 
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLR-LGRKLHRYIIR- 254

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                        + + + DV     +VD Y K GD   AR++F
Sbjct: 255 -----------------------------NSNVNLDVFVGNALVDMYLKCGDANFARKVF 285

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP +N VSW+++++  ++   FKE L +FR+MQ +G+KP++  LV+VL +CA+LG + 
Sbjct: 286 QEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLE 345

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH+Y  R  +  +  +  A+VDMY+KCG +  A  VF+ ++ KD  ++ AMI G+A
Sbjct: 346 LGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLA 405

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G   K+L+LF  M K G +P E TFV VLT C+H  +V +G   FE+MS +Y + PQL
Sbjct: 406 MHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQL 465

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG++ EAE+FI          DA V GALL AC+I+GK+E+G  V +K
Sbjct: 466 EHYGCMVDLLGRAGLINEAEEFIRNMP---IEPDAFVLGALLGACKIHGKVELGESVMKK 522

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + ++       +VL  NIY  A    +A K+RK + E  ++K PGCS IE++GV+ EF  
Sbjct: 523 IEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQK 582

Query: 421 GDNRHAQAGEIYRVIHSFL 439
           GD  H +  EIY+++   +
Sbjct: 583 GDKSHPKIKEIYKLLDEIM 601



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 143/278 (51%), Gaps = 34/278 (12%)

Query: 1   MIRGYMQANFPKLS-VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG   +N   +  +  Y  ML  G  P+NYT P ++KAC     +   G  VH   +K
Sbjct: 95  IIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVRE-GEEVHGQAIK 153

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D +V ++L+  Y++                 DV+                +AR++
Sbjct: 154 MGLASDVYVSNTLMRMYAVC----------------DVI---------------RSARKV 182

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+  P+R+ VSW+ ++  Y ++   +E + LF +M    ++ +   LV VL++CA LG +
Sbjct: 183 FDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDL 242

Query: 180 TQGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             G  +H Y  R  ++  +V +  A+VDMY KCG  + A  VF+ +  K+  +WN+MISG
Sbjct: 243 RLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISG 302

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           +A  G  K+SL +F +M + G +P + T VAVL +C +
Sbjct: 303 LAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCAN 340



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 114/256 (44%), Gaps = 5/256 (1%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           D   A  L  ++   N   ++AI+   +  + D  E L +++QM   G+ P+   +  VL
Sbjct: 73  DPRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVL 132

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA   A+ +G  VH  A +  L  +V ++  ++ MY+ C  + SA  VF+    +D  
Sbjct: 133 KACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLV 192

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +W  MI G    G A++ + LF  M     Q    T V VL++C     +R G  L   +
Sbjct: 193 SWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYI 252

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                V   +     +VD+  + G    A K  +E    +   +   W +++S     G+
Sbjct: 253 IRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQE----MPVKNVVSWNSMISGLAQKGQ 308

Query: 351 IEVGNRVWRKLAEMGI 366
            +    ++RK+  +G+
Sbjct: 309 FKESLYMFRKMQRLGV 324



 Score = 46.2 bits (108), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 99/261 (37%), Gaps = 48/261 (18%)

Query: 217 ALSVFEGISNKDAGAWNAMISGVAM-NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           ALS+   +   +   +NA+I G+A  N D+ + L ++ +M+  G  P   T   VL  C 
Sbjct: 77  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136

Query: 276 HAKMVRDG----------------------------LNLFENMSAVYGVEPQ--LEHYAC 305
            ++ VR+G                             ++  +   V+   PQ  L  +  
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 196

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++    + G   E      E  G     D      +LS+C   G + +G ++ R +    
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNS 256

Query: 366 ITDFSTHVLS--YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
             +    V +   ++Y + G   +AN  RK+  E  +K     +V+  N ++        
Sbjct: 257 NVNLDVFVGNALVDMYLKCG---DANFARKVFQEMPVK-----NVVSWNSMISGL----- 303

Query: 424 RHAQAGEIYRVIHSFLKMSNL 444
             AQ G+    ++ F KM  L
Sbjct: 304 --AQKGQFKESLYMFRKMQRL 322


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/434 (38%), Positives = 258/434 (59%), Gaps = 8/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIR + ++  P+ S   Y  +L  G   +P+NYT   L++AC  LG  E  G+ VH   +
Sbjct: 85  MIRAHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRET-GLQVHGMTI 143

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF  DP V + L+  Y+ +  + +   +F+     D V  T MV    + GD   AR+
Sbjct: 144 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARK 203

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE MPE++ ++W+A+++ Y+++ + +E L+LF  MQ  G+K N   ++SVL+AC  LGA
Sbjct: 204 LFEGMPEKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGA 263

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W HSY +R  ++  V L T +VD+Y+KCG +  A+ VF G+  K+   W++ ++G
Sbjct: 264 LDQGRWAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNG 323

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AMNG  +K L+LF  M + G  P   TFV+VL  C+    V +G   F++M   +G+EP
Sbjct: 324 LAMNGFGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEP 383

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           QL+HY C+VDL ARAG +E+A   I++         A VW +LL A R+Y  +E+G    
Sbjct: 384 QLDHYGCLVDLYARAGRLEDAVSIIQQMP---MKAHAAVWSSLLHASRMYKNLELGVLAS 440

Query: 359 RKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           +K+ E+  ++   +VL  NIY ++  WD   + VR+ +   G++K+PGCSV+EVNG V E
Sbjct: 441 KKMLELETSNHGAYVLLSNIYADSDDWD-NVSHVRQSMKSKGVRKQPGCSVMEVNGEVHE 499

Query: 418 FLAGDNRHAQAGEI 431
           F  GD  H +  EI
Sbjct: 500 FFVGDKSHPKYNEI 513



 Score =  228 bits (581), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 132/438 (30%), Positives = 229/438 (52%), Gaps = 38/438 (8%)

Query: 3    RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
            RGY+   F  LS    +   ++GF PN  TF  +I ACV  G  E  G+ +H  V+K G 
Sbjct: 613  RGYLGKCFEVLS---RMMRSEVGFRPNEVTFLSMISACVHGGNKEE-GVCIHGLVMKSGV 668

Query: 63   GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
             E+  VV++L+  Y                               GK GD  ++ +LFE 
Sbjct: 669  LEEVKVVNALMNLY-------------------------------GKTGDLISSCKLFED 697

Query: 123  MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
            +  +N VSW+ ++  + +    +E L+ F   + VG+KP+++  ++VL  C  +G +   
Sbjct: 698  LSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLS 757

Query: 183  LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
              +H          N  + TA++D+Y+K G +  + +VF  I++ D+ AW AM++  A +
Sbjct: 758  QGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATH 817

Query: 243  GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
            G  + +++ F+ MV  G  P   TF  +L  C+H+ +V +G   FE MS  Y +EP+L+H
Sbjct: 818  GYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDH 877

Query: 303  YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
            Y+C+VDL+ R+G++++A   I+E       G   VWGALL ACR+Y   ++G +  ++L 
Sbjct: 878  YSCMVDLMGRSGLLQDAYGLIKEMPMEPSSG---VWGALLGACRVYKDTQLGTKAAKRLF 934

Query: 363  EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
            E+   D   +++  NIY  +G   +A+++R L+ + G+ +  G S IE    + +F+ GD
Sbjct: 935  ELEPRDGRNYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGD 994

Query: 423  NRHAQAGEIYRVIHSFLK 440
              H ++ +I + +    K
Sbjct: 995  WSHPESEKIQKKLKEIRK 1012


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 163/428 (38%), Positives = 257/428 (60%), Gaps = 22/428 (5%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           + D   +PN +TFP ++KAC     L   G  +H  +VKFGF ED FV+S+L+  Y +  
Sbjct: 113 LCDGRVKPNRFTFPSVLKACARASRLRE-GKQIHGLIVKFGFHEDEFVISNLVRMYVMCA 171

Query: 81  KMGTARALFDKS----------------PDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
            M  A +LF K+                 D +VV W  M+DG  ++GD ++A+ LF++MP
Sbjct: 172 VMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMP 231

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            R+ VSW+ +++ Y++   F E ++LF++MQ   + PN   LVSVL A A +GA+  G W
Sbjct: 232 PRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKW 291

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H YA +  +E + +L +A+VDMYSKCG +  AL VFE +  ++A  W+A+I   AM+G 
Sbjct: 292 IHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGR 351

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           A+ ++  F  M K+G  P +  ++ +L+ C+HA +V +G + F +M  V G++P++EHY 
Sbjct: 352 AEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYG 411

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C+VDLL RAG +EEAE+ I          D  +W ALL AC+++  +++G RV   L E+
Sbjct: 412 CMVDLLGRAGHLEEAEELIRNMP---IEPDDVIWKALLGACKMHKNLKMGERVAETLMEL 468

Query: 365 GITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
              D  ++V   N+Y   G W+  A +VR  +    ++K PGCS IE++G++ EFL  D+
Sbjct: 469 APHDSGSYVALSNLYASLGNWEAVA-RVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDD 527

Query: 424 RHAQAGEI 431
            H++A EI
Sbjct: 528 SHSKAKEI 535



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 165/372 (44%), Gaps = 43/372 (11%)

Query: 24  MGFEPNNYTFPPLI-----KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
           + F P     PPLI      +C     L+     +HA  +K G  +DP   + +++F + 
Sbjct: 12  LNFSPQ----PPLILSKPFTSCKTPRDLKQ----LHAIFIKTGQIQDPLTAAEVIKFCAF 63

Query: 79  VHK-MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE---LFEKM-----PERNAV 129
             + +  ARA+F + P+ +   W T++    +  D     E   LF  M      + N  
Sbjct: 64  SSRDIDYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRF 123

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE---SGLVSVLTACAHL----GAITQG 182
           ++ +++ A +R S  +E   +   + + G   +E   S LV +   CA +        + 
Sbjct: 124 TFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKN 183

Query: 183 LWVHSYAKRYHLEK-----NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +     + +  L+K     NV+L   ++D   + G + SA ++F+ +  +   +WN MIS
Sbjct: 184 VVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMIS 243

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYG 295
           G A NG   +++ LF  M  S   P   T V+VL        +  G  ++L+   + V  
Sbjct: 244 GYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKV-E 302

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++  L   + +VD+ ++ G +++A +  E     L   +A  W A++ A  ++G+ E   
Sbjct: 303 IDDVLG--SALVDMYSKCGSIDKALQVFET----LPKRNAITWSAIIGAFAMHGRAEDAI 356

Query: 356 RVWRKLAEMGIT 367
             +  + + G+T
Sbjct: 357 IHFHLMGKAGVT 368



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 102/248 (41%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q      ++  + +M     +PN  T   ++ A   +G LE  G ++H +  K 
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALE-LGKWIHLYAGKN 299

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  + S+L++ YS    +  A  +F+  P R+ +TW+ ++  +   G  E+A    
Sbjct: 300 KVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDA---- 355

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      +  F  M + G+ PN+   + +L+AC+H G + 
Sbjct: 356 ---------------------------IIHFHLMGKAGVTPNDVAYIGILSACSHAGLVE 388

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G    S+  K   L+  +     +VD+  + GH+  A  +   +    D   W A++  
Sbjct: 389 EGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGA 448

Query: 239 VAMNGDAK 246
             M+ + K
Sbjct: 449 CKMHKNLK 456


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/432 (38%), Positives = 254/432 (58%), Gaps = 5/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q    + ++  +++M   G   +       + AC  +  +E  G +VH   VK 
Sbjct: 241 MVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVE-MGRWVHGLAVKV 299

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENAREL 119
           G  +   + ++L+  YS   ++  AR +FD   +  D+++W +M+ GY + G  ++A  L
Sbjct: 300 GVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEML 359

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  MPE++ VSWSA+++ Y++   F E L+LF++MQ  G++P+E+ LVS ++AC HL  +
Sbjct: 360 FYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATL 419

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H+Y  R  L+ NVIL+T ++DMY KCG V +AL VF  +  K    WNA+I G+
Sbjct: 420 DLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGL 479

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG  ++SL +F  M K+GT P E TF+ VL  C H  +V DG + F +M   + +E  
Sbjct: 480 AMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEAN 539

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY C+VDLL RAG+++EAE+ I+         D   WGALL ACR +   E+G R+ R
Sbjct: 540 IKHYGCMVDLLGRAGLLKEAEELIDSMP---MAPDVATWGALLGACRKHRDNEMGERLGR 596

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL ++       HVL  NIY   G      ++R ++++ G+ K PGCS+IE NG V EFL
Sbjct: 597 KLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFL 656

Query: 420 AGDNRHAQAGEI 431
           AGD  H Q  +I
Sbjct: 657 AGDKTHPQINDI 668



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 193/417 (46%), Gaps = 80/417 (19%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHVVKFGFG 63
           Y+Q N P  ++  Y   L    +P++YT+P L++ C     +  F G  +HAH V  GF 
Sbjct: 81  YLQ-NSPHQALLHYKLFLASHAKPDSYTYPILLQCCA--ARVSEFEGRQLHAHAVSSGFD 137

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D +V ++L+  Y++   +G+AR +F++SP  D+V+W T++ GY + G+ E A  +FE M
Sbjct: 138 GDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGM 197

Query: 124 PERNA---------------------------------VSWSAIMAAYSRISDFKEVLSL 150
           PERN                                  VSWSA+++ Y +    +E L L
Sbjct: 198 PERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVL 257

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210
           F +M+  G+  +E  +VS L+AC+ +  +  G WVH  A +  +E  V L  A++ +YS 
Sbjct: 258 FVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSS 317

Query: 211 CGHVHSALSVFE--------------------------------GISNKDAGAWNAMISG 238
           CG +  A  +F+                                 +  KD  +W+AMISG
Sbjct: 318 CGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISG 377

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A +    ++L LF  M   G +P ET  V+ ++ CTH   +  G  +   +S    ++ 
Sbjct: 378 YAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISR-NKLQV 436

Query: 299 QLEHYACVVDLLARAGMVEEA-EKF--IEEKMGGLGGGDANVWGALLSACRIYGKIE 352
            +     ++D+  + G VE A E F  +EEK         + W A++    + G +E
Sbjct: 437 NVILSTTLIDMYMKCGCVENALEVFYAMEEK-------GVSTWNAVILGLAMNGSVE 486



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 122/281 (43%), Gaps = 9/281 (3%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDF-KEVLSLFRQMQEVGMKPNESGLVSVLT 171
           F  +  +F  +   N  +W+ IM A+  + +   + L  ++       KP+      +L 
Sbjct: 54  FHYSLRIFNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQ 113

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            CA   +  +G  +H++A     + +V +   ++++Y+ CG V SA  VFE     D  +
Sbjct: 114 CCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVS 173

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN +++G    G+ +++  +F+ M +  T  +  + +A+       +  R   N      
Sbjct: 174 WNTLLAGYVQAGEVEEAERVFEGMPERNTIAS-NSMIALFGRKGCVEKARRIFN------ 226

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
            V G E  +  ++ +V    +  M EEA     E  G     D  V  + LSAC     +
Sbjct: 227 GVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNV 286

Query: 352 EVGNRVWRKLAEMGITDF-STHVLSYNIYKEAGWDMEANKV 391
           E+G  V     ++G+ D+ S      ++Y   G  ++A ++
Sbjct: 287 EMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRI 327


>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  315 bits (807), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 250/417 (59%), Gaps = 3/417 (0%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P+ YT P ++KA   +  + + G  +HA  +K G   + FV +SLL  Y     M +
Sbjct: 100 GIHPDTYTLPYVLKASARMTNI-HLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRS 158

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR +FD+ P+   V+WT M+ GY  MGD + ARELF+    ++   W A+++ Y + + F
Sbjct: 159 ARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCF 218

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           KE L +FR MQ   ++P+E+ +V++L+ACAH+GA+  G+W+H Y  R  L   + ++T +
Sbjct: 219 KEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGL 278

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KCGH+  A  +F  +S +D   WNAMISG+AM+GD + +++LF  M K+G +P  
Sbjct: 279 IDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDN 338

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+AVL  C+++ MV +G+ ++  MS V+ +EP+ EHY CV+DLL+R G  EEAE  I+
Sbjct: 339 ITFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQ 398

Query: 325 E-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
                     +A  W A LSAC  +G+ +       +L ++       +VL  N+Y   G
Sbjct: 399 RLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE-RHSGAYVLLSNMYAALG 457

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
              +A +VR ++   G++K PGCS I+VNGVV EF+AG+  H     I+ V+    K
Sbjct: 458 KHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNK 514



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 130/307 (42%), Gaps = 49/307 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q N  K  +  +  M     EP+      ++ AC  +G L+  G+++H ++ + 
Sbjct: 208 MISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDT-GIWIHRYLGRL 266

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V + L++ Y+    +  A+ LF++   RD V W  M+ G    GD E A    
Sbjct: 267 GLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGA---- 322

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      + LF +M++ G+KP+    ++VL AC++ G + 
Sbjct: 323 ---------------------------IKLFMEMEKAGIKPDNITFIAVLAACSNSGMVD 355

Query: 181 QGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGI-----SNKDAGAWNA 234
           +G+ + +     H +E        V+D+ S+ G    A  V + +      +++A AW A
Sbjct: 356 EGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRA 415

Query: 235 MISGVAMNGDAKKSLELFDRMVK----SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            +S    +G  +++    +R+ +    SG     +   A L     AK VR       NM
Sbjct: 416 FLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVR-------NM 468

Query: 291 SAVYGVE 297
             + GVE
Sbjct: 469 MKLKGVE 475



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 143/338 (42%), Gaps = 21/338 (6%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY--SLVHKMGTARALFDKSP 93
           L+  C+ +  L+      HA V+K G     FV+S LL F   S    +  A  LF    
Sbjct: 11  LLHKCINMNQLKQ----AHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQ 66

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV-----SWSAIMAAYSRISDFKEVL 148
              +  + TM+      G+F NA  +F  +  RN +     +   ++ A +R+++     
Sbjct: 67  HPTICIFNTMIKALLLRGEFLNAIAVFSAIF-RNGIHPDTYTLPYVLKASARMTNIHLGE 125

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           S+     ++G   NE    S+L        +     V         E + +  T ++  Y
Sbjct: 126 SIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMP----ELSAVSWTVMIYGY 181

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +  G V +A  +F+  + KD G W AMISG   N   K+ L +F  M  +  +P E   V
Sbjct: 182 ANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIV 241

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            +L+ C H   +  G+ +   +  + G+   L     ++D+ A+ G ++ A+    E   
Sbjct: 242 TILSACAHMGALDTGIWIHRYLGRL-GLPLTLRVSTGLIDMYAKCGHLDLAKYLFNE--- 297

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +   D   W A++S   + G  E   +++ ++ + GI
Sbjct: 298 -MSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGI 334


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/420 (37%), Positives = 250/420 (59%), Gaps = 10/420 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y+ +L     PN +TF  L+K+C         G  +H HV+KFG G DP+V + L++ Y+
Sbjct: 118 YVQLLSSEINPNEFTFSSLLKSCST-----KSGKLIHTHVLKFGLGIDPYVATGLVDVYA 172

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               + +A+ +FD+ P+R +V+ T M+  Y K G+ E AR LF+ M ER+ VSW+ ++  
Sbjct: 173 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDG 232

Query: 138 YSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           Y++     + L LF+++   G  KP+E  +V+ L+AC+ +GA+  G W+H + K   +  
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           NV + T ++DMYSKCG +  A+ VF     KD  AWNAMI+G AM+G ++ +L LF+ M 
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352

Query: 257 K-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
             +G QPT+ TF+  L  C HA +V +G+ +FE+M   YG++P++EHY C+V LL RAG 
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           ++ A + I+         D+ +W ++L +C+++G   +G  +   L  + I +   +VL 
Sbjct: 413 LKRAYETIKNMN---MDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469

Query: 376 YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            NIY   G      KVR L+ E G+ K+PG S IE+   V EF AGD  H+++ EIY ++
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 130/298 (43%), Gaps = 51/298 (17%)

Query: 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
            Y   G   ++  LF +  + +   ++A +   S      +   L+ Q+    + PNE  
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHL------------------------------- 194
             S+L +C    +   G  +H++  ++ L                               
Sbjct: 133 FSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           E++++ +TA++  Y+K G+V +A ++F+ +  +D  +WN MI G A +G    +L LF +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 255 MVKSG-TQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYAC--VVDL 309
           ++  G  +P E T VA L+ C+    +  G  +++F   S +     +L    C  ++D+
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRI-----RLNVKVCTGLIDM 303

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
            ++ G +EEA     +        D   W A+++   ++G  +   R++ ++   GIT
Sbjct: 304 YSKCGSLEEAVLVFNDT----PRKDIVAWNAMIAGYAMHGYSQDALRLFNEM--QGIT 355



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 22/158 (13%)

Query: 178 AITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           ++ + L +H+   R++L    +  +L   +   Y+  G +  +L++F    + D   + A
Sbjct: 41  SVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 100

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-------HAKMVRDGLNLF 287
            I+  ++NG   ++  L+ +++ S   P E TF ++L +C+       H  +++ GL   
Sbjct: 101 AINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFGL--- 157

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
                  G++P +     +VD+ A+ G V  A+K  + 
Sbjct: 158 -------GIDPYVA--TGLVDVYAKGGDVVSAQKVFDR 186


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 179/491 (36%), Positives = 273/491 (55%), Gaps = 74/491 (15%)

Query: 1   MIRGYM-QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y  + +FP    F Y  ML     PN+YTFP LIK C  +G     G+  HA +VK
Sbjct: 77  IIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFRE-GLKGHARIVK 135

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------------------------- 92
           FGFG D F  +SL+  YS+  ++G AR +FD+S                           
Sbjct: 136 FGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKV 195

Query: 93  ----PDRDVVTWTTMVDGYGKMGDFENARELFEKMPER---------------------- 126
               PDRDV++W  ++ GY  +GD + A ELFE +PER                      
Sbjct: 196 FNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAV 255

Query: 127 -----------NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK--PNESGLVSVLTAC 173
                      N VSW++++A ++R+ ++ E L LF +M E G +  PNE+ LVSVLTAC
Sbjct: 256 KFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVE-GREAVPNEATLVSVLTAC 314

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A+LG ++ G+WVHS+ +  +++ +V+L T ++ MY+KCG +  A  VF+ +  +   +WN
Sbjct: 315 ANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWN 374

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           +MI G  ++G   K+LELF  M K+G QP + TF++VL+ CTHA MV +G   F+ M  V
Sbjct: 375 SMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRV 434

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           Y +EP++EHY C+VDLLARAG+VE +E+ I  +M  +  G A +WGALLS C  +   E+
Sbjct: 435 YKIEPKVEHYGCMVDLLARAGLVENSEELI--RMVPVKAGSA-IWGALLSGCSNHLDSEL 491

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVN 412
           G  V ++  E+   D   ++L  N+Y   G WD +   VR +I E G++K+   S++ + 
Sbjct: 492 GEIVAKRFIELEPQDIGPYILLSNMYAAKGRWD-DVEHVRLMIKEKGLQKEAASSLVHLE 550

Query: 413 GVVEEFLAGDN 423
               +++  ++
Sbjct: 551 DFESKYVKNNS 561



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 14/216 (6%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR-QMQEVGMKPNESGLVSVLT 171
           F  A  LF+ +   +A   + I+ AY+R  DF   L  +  +M    + PN      ++ 
Sbjct: 56  FPRATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIK 115

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            C  +G+  +GL  H+   ++    ++    +++ MYS  G + +A  VF+     D  +
Sbjct: 116 VCTDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVS 175

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           +N+MI G   NG+   + ++F+ M      P           C  A  V  G+   +  +
Sbjct: 176 YNSMIDGYVKNGEIGAARKVFNEM------PDRDVLS---WNCLIAGYV--GVGDLDAAN 224

Query: 292 AVYGVEPQLE--HYACVVDLLARAGMVEEAEKFIEE 325
            ++   P+ +   + C++D  AR G V  A KF + 
Sbjct: 225 ELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDR 260


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 161/427 (37%), Positives = 249/427 (58%), Gaps = 11/427 (2%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +ML  G  P ++T    + AC  L      G  +HA+  K     D +V ++LL  Y+  
Sbjct: 123 EMLGRGLIPTSHTLSSSLPACHGLA----LGRALHAYAFKLALAGDSYVATALLGMYARG 178

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                ARALFD+ PD  VV  T M+  Y KMG  ++ARELF+ MP ++ + W+A++  Y+
Sbjct: 179 GDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT 238

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEKNV 198
           +     E L LFR M   G+ P+E  ++  L+A A LG    G W+HSY K    ++ N 
Sbjct: 239 QHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNA 298

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            + TA++DMY KCG +  A+SVF  I +KD   WNAMI+G AM+GD++K+LE+F ++   
Sbjct: 299 RVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 358

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G  PT+ TF+ +L  C+H+ +V +G   F++M   Y + P++EHY C+VDLL RAG++EE
Sbjct: 359 GLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 418

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           A   ++         D  +W +LL+ACR++  + +G ++   L   G+ +   ++L  NI
Sbjct: 419 AFHLVQSMT---IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNI 475

Query: 379 YKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           Y   G   E  +VR ++  +G++K+PGCS IEV   V EF+AGD  H +  EIY ++   
Sbjct: 476 YAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLE-- 533

Query: 439 LKMSNLV 445
            KM+ +V
Sbjct: 534 -KMNGIV 539



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 13/322 (4%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA  V+ G   D  V   L   Y+   ++     L   +PD   V +T+ +  +   G 
Sbjct: 54  LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 113

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  L  +M  R  +  S  +++          L+L R +     K   +G   V TA
Sbjct: 114 HLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATA 170

Query: 173 CAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
              LG   +G    +    +    + +V+  TA++  Y+K G +  A  +F+G+ +KD  
Sbjct: 171 L--LGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFI 228

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            WNAMI G   +G   ++L LF  M++SG  P E   +  L+          G  L   +
Sbjct: 229 CWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYV 288

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                V+        ++D+  + G +E+A          +G  D  VW A+++   ++G 
Sbjct: 289 KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNS----IGDKDIVVWNAMINGYAMHGD 344

Query: 351 IEVGNRVWRKLAEMGI--TDFS 370
                 ++ +L   G+  TD +
Sbjct: 345 SRKALEMFSQLRSQGLWPTDIT 366


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  315 bits (806), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 161/427 (37%), Positives = 249/427 (58%), Gaps = 11/427 (2%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +ML  G  P ++T    + AC  L      G  +HA+  K     D +V ++LL  Y+  
Sbjct: 122 EMLGRGLIPTSHTLSSSLPACHGLA----LGRALHAYAFKLALAGDSYVATALLGMYARG 177

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                ARALFD+ PD  VV  T M+  Y KMG  ++ARELF+ MP ++ + W+A++  Y+
Sbjct: 178 GDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYT 237

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEKNV 198
           +     E L LFR M   G+ P+E  ++  L+A A LG    G W+HSY K    ++ N 
Sbjct: 238 QHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNA 297

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            + TA++DMY KCG +  A+SVF  I +KD   WNAMI+G AM+GD++K+LE+F ++   
Sbjct: 298 RVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQ 357

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G  PT+ TF+ +L  C+H+ +V +G   F++M   Y + P++EHY C+VDLL RAG++EE
Sbjct: 358 GLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEE 417

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           A   ++         D  +W +LL+ACR++  + +G ++   L   G+ +   ++L  NI
Sbjct: 418 AFHLVQSMT---IAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGMYILLSNI 474

Query: 379 YKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           Y   G   E  +VR ++  +G++K+PGCS IEV   V EF+AGD  H +  EIY ++   
Sbjct: 475 YAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEIYAMLE-- 532

Query: 439 LKMSNLV 445
            KM+ +V
Sbjct: 533 -KMNGIV 538



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 13/322 (4%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA  V+ G   D  V   L   Y+   ++     L   +PD   V +T+ +  +   G 
Sbjct: 53  LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 112

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  L  +M  R  +  S  +++          L+L R +     K   +G   V TA
Sbjct: 113 HLAALALLSEMLGRGLIPTSHTLSSSLPAC---HGLALGRALHAYAFKLALAGDSYVATA 169

Query: 173 CAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
              LG   +G    +    +    + +V+  TA++  Y+K G +  A  +F+G+ +KD  
Sbjct: 170 L--LGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFI 227

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            WNAMI G   +G   ++L LF  M++SG  P E   +  L+          G  L   +
Sbjct: 228 CWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYV 287

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                V+        ++D+  + G +E+A          +G  D  VW A+++   ++G 
Sbjct: 288 KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNS----IGDKDIVVWNAMINGYAMHGD 343

Query: 351 IEVGNRVWRKLAEMGI--TDFS 370
                 ++ +L   G+  TD +
Sbjct: 344 SRKALEMFSQLRSQGLWPTDIT 365


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/439 (37%), Positives = 259/439 (58%), Gaps = 14/439 (3%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
             P L++    DML  G  P  +T    + AC  L P    G  +H +  K     D +V
Sbjct: 370 RLPALALLS--DMLAQGLLPTAHTLSASLPACRGLSP----GRALHGYAFKLALAGDSYV 423

Query: 69  VSSLLEFYSLVHKMGTARALFDKS-PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
            ++LL  Y+       ARALFD   PD  VV+ T M+  Y  MG  ++AR LF+ +P ++
Sbjct: 424 ATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKD 483

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
            V W+A++  Y++     E L LFR+M   G++P+E  +V VL+A A LG +  G W+HS
Sbjct: 484 FVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHS 543

Query: 188 YAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
           Y K    ++ +V + TA++DMY KCG +  A+ VF GI +KD   WNAMI+G AM+GD++
Sbjct: 544 YVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSR 603

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
           K+LE+F +  + G  PT+ TF+ +L  C+H+ MV +G   F++M   YG++P++EHY C+
Sbjct: 604 KALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCM 663

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           VDLL RAG+++EA   ++         DA +W +LL+ACR++  + +G ++   L   G+
Sbjct: 664 VDLLGRAGLIKEAFCLVQSMK---ITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGL 720

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
            +   ++L  NIY   G   E  +VR ++  +G++K+PGCS IE++  V EF+AGD  H 
Sbjct: 721 ANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHP 780

Query: 427 QAGEIYRVIHSFLKMSNLV 445
           +  EIY ++    KM+ LV
Sbjct: 781 RTDEIYVMLD---KMNGLV 796



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 113/262 (43%), Gaps = 35/262 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q   P  ++  +  ML  G EP+  T   ++ A   LG +E+ G ++H++V   
Sbjct: 490 MIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVES-GKWLHSYVKNS 548

Query: 61  GFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              +    V ++L++ Y     +G A  +F    D+D+V W  M++GY   GD   A   
Sbjct: 549 RRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKA--- 605

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                       L +F Q +E G+ P +   + +L AC+H G +
Sbjct: 606 ----------------------------LEMFVQSREQGLWPTDITFIGLLNACSHSGMV 637

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G  +  S  + Y ++  +     +VD+  + G +  A  + + +    DA  W ++++
Sbjct: 638 EEGREFFQSMEREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLA 697

Query: 238 GVAMNGDAKKSLELFDRMVKSG 259
              ++ +     ++ D +V  G
Sbjct: 698 ACRLHKNMSLGQQIADYLVAKG 719


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  314 bits (805), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 257/443 (58%), Gaps = 12/443 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP-------NNYTFPPLIKACVILGPLENFGMFV 53
           MI+ Y Q +  + +V  Y+ ML     P       + +T+P L+KAC     LE  G  V
Sbjct: 83  MIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALE-LGKQV 141

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H HVV+ G      V +SL+E Y+    +  A  +FD+  +RDVV+W  ++  + ++G  
Sbjct: 142 HTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  LF  MP++  V+W+A+++ Y+ + D+   +  FR MQ  G +P++  +V+VL AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+  G W+++Y KR+ +  +  +  A+++MY+KCG +  AL +F+G+++KD  +W+
Sbjct: 262 AQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWS 321

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            +I G+A +G A +++ LF  M K G  +P   TFV +L+ C++A +V +GL+ F+ M+ 
Sbjct: 322 TVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMND 381

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           VYGVEP +EHY CVVDLL R+G +  A   + +        DA VWG+LLSACR +G ++
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMP---VPADAKVWGSLLSACRSHGDVD 438

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
                  +L E+   D    V+  N+Y  A    +    RK I    M+K PGCS+IEV 
Sbjct: 439 TAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVG 498

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
            VV EF+AG+   ++ G +  V+
Sbjct: 499 NVVREFVAGEGLSSELGGLAGVL 521



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 37/233 (15%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E  +++ L AC     +   L VH +  R  + ++  LAT +V + +    V  A  VF 
Sbjct: 14  EDAVMARLRACVTFRDL---LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFA 70

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET-------TFVAVLTTC- 274
            + + +    NAMI   A N   + ++ ++ RM++  T P +        T+  +L  C 
Sbjct: 71  QVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG 130

Query: 275 ----------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
                      H  +VR G     + SA+  V+  L      +++  RAG +  A K  +
Sbjct: 131 GTAALELGKQVHTHVVRSGC----DSSAI--VQNSL------IEMYTRAGDLALAHKVFD 178

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           E    +   D   W  L+SA    G++     ++  + +  I  ++  V  Y 
Sbjct: 179 E----MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYT 227


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 267/468 (57%), Gaps = 38/468 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIR Y+ +  P+ S+  +  M      P ++Y+   +I+AC  L    N G  +H  V+K
Sbjct: 75  MIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGN-GQKLHTQVLK 133

Query: 60  FGFGEDPFVVSSLLEFYS-------------------------------LVHKMGTARAL 88
            G G D FV ++L+E Y+                                V ++  A  L
Sbjct: 134 IGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDL 193

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           FD+ P+RD+V+W TM+ G+  +GD   A++LF++  ER+ +SWS+++AAY++     E L
Sbjct: 194 FDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEAL 253

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
            LF +MQ   + P++  +VSVL+AC  +GA+  G  +H   +R  +E ++ L T++VDMY
Sbjct: 254 RLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMY 313

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG + ++L VF G++N+D  AW+AMI G+A +G  + +L+ F +M+    +P + TF+
Sbjct: 314 AKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFI 373

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            VL+ C+H  +V +G   F +MS VY V P++EHY CVVD+L RAG ++EA + I+    
Sbjct: 374 GVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMP- 432

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDME 387
                DA VW ALL ACRIY  +E+       L E+       +VL  NIY +A  WD  
Sbjct: 433 --FAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKV 490

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            N VR+++    ++K PG S IEV+  V EF+AGD  H ++ +I R++
Sbjct: 491 VN-VRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRML 537



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 29/204 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K     + FV++ LL            R LF  S   D++              
Sbjct: 22  IHALIIKTSLDGNNFVLAKLL------------RRLFACSSANDLLY------------- 56

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES-GLVSVLT 171
              AR +F+++P  +   W+ ++ AY    + +E +SLF QM+     P +S  L  V+ 
Sbjct: 57  ---ARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQ 113

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           AC  L     G  +H+   +  L  ++ + TA+++MY+K G +  A ++ + +++ D   
Sbjct: 114 ACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVP 173

Query: 232 WNAMISGVAMNGDAKKSLELFDRM 255
           +N +++     G+   + +LFDRM
Sbjct: 174 YNVLLAEYVRVGEINLAHDLFDRM 197


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  314 bits (804), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 176/472 (37%), Positives = 256/472 (54%), Gaps = 38/472 (8%)

Query: 1   MIRGYMQAN--FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +++ + Q N     +S F    +L     P+ YTF  ++KAC  L  +   G  VH  V 
Sbjct: 96  LLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLE-GQKVHCFVT 154

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTW------------------ 100
           K+G   + FV +SL++ Y  V     A+ LFD+   RDVV+W                  
Sbjct: 155 KYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARM 214

Query: 101 -------------TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
                        +TM+ GY ++G+ E AR+LFE MP RN VSW+A++A Y++   + + 
Sbjct: 215 VFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADA 274

Query: 148 LSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           + LFRQMQ E G+ PN+  LVSVL+ACAHLGA+  G W+H + +R  +E  + L  A+ D
Sbjct: 275 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 334

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY+KCG V  A  VF  +  +D  +W+ +I G+AM G A ++   F  M++ G +P + +
Sbjct: 335 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 394

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           F+ +LT CTHA +V  GL  F+ M  VYG+ P++EHY CVVDLL+RAG +++AE  I   
Sbjct: 395 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 454

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386
                  +  VWGALL  CRIY   E G RV  ++ E+      + V   N+Y   G   
Sbjct: 455 P---MQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLD 511

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           +A   R  + +    K PGCS IE+N  V EF  GD+ H Q+  IY +I   
Sbjct: 512 DAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIREL 563



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 26/243 (10%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVLTACAHLGAITQGLW 184
           N  +++A++ A+S+ + +   +S F     +   PN  E    SVL ACA L  + +G  
Sbjct: 89  NIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQK 148

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH +  +Y  E N+ +  ++VD+Y K G    A  +F+ +  +D  +WN +ISG   +G 
Sbjct: 149 VHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGM 208

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM--------SAVYGV 296
             K+  +FD M++        ++  +++       + +   LFENM        +A+   
Sbjct: 209 VDKARMVFDGMMEKNL----VSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAG 264

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
             Q E YA  ++L  +            +  GGL   D  +  ++LSAC   G +++G  
Sbjct: 265 YAQNEKYADAIELFRQM-----------QHEGGLAPNDVTL-VSVLSACAHLGALDLGKW 312

Query: 357 VWR 359
           + R
Sbjct: 313 IHR 315


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 155/406 (38%), Positives = 249/406 (61%), Gaps = 5/406 (1%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKMGTAR 86
           PN+ T   ++ AC  L  L   G  ++   +K G  E   ++ ++L++ ++   +M  AR
Sbjct: 237 PNSVTLVLMLSACSKLKDLVG-GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAAR 295

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD+   RDV++WT++V G+      + AR+ F++MPER+ VSW+A++  Y R++ FKE
Sbjct: 296 GVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKE 355

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           VL+LFR MQ   +KP+E  +VS+LTACAHLGA+  G W  +Y  +  ++ +  +  A++D
Sbjct: 356 VLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALID 415

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY KCG+V  A  +F  +  KD   W AMI G+A NG  +++L +F  M+++   P E T
Sbjct: 416 MYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEIT 475

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           ++ V+  CTH  +V  G + F NM+  +G++P L HY C+VDLL RAG ++EA   +E  
Sbjct: 476 YIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEA---LEVI 532

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386
           M      ++ VWG+LL ACR++  +++      ++ E+   + + +VL  NIY       
Sbjct: 533 MNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWK 592

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
             + VRK++ E G+KK PGCS++E+NG+V EF+AGD  H Q+ EIY
Sbjct: 593 NLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIY 638



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 161/379 (42%), Gaps = 76/379 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY + N  +  V  Y  ML    +P+ +TFP L+K       L+ +G  +  H V  
Sbjct: 106 MIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALK-YGKVLLNHAVIH 164

Query: 61  GF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           GF   + FV    +  +SL   +  AR +FD     +VVTW  ++ GY +   +E ++ L
Sbjct: 165 GFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRL 224

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M ++                                + PN   LV +L+AC+ L  +
Sbjct: 225 FIEMEKKCEC-----------------------------VSPNSVTLVLMLSACSKLKDL 255

Query: 180 TQGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE---------------G 223
             G  +++ Y K   +E N+IL  A++DM++ CG + +A  VF+               G
Sbjct: 256 VGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTG 315

Query: 224 ISN----------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
            +N                +D  +W AMI G       K+ L LF  M  S  +P E T 
Sbjct: 316 FANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTM 375

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFI 323
           V++LT C H   +  G       +  Y  + ++++   +    +D+  + G VE+A+K  
Sbjct: 376 VSILTACAHLGALELG-----EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIF 430

Query: 324 EEKMGGLGGGDANVWGALL 342
            E    +   D   W A++
Sbjct: 431 NE----MQKKDKFTWTAMI 445



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 126/278 (45%), Gaps = 10/278 (3%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD   AR++F+++P+ +   W+ ++  YSRI+  +  +SL++ M    +KP+      +L
Sbjct: 83  GDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142

Query: 171 TACAHLGAITQGLWVHSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
                  A+  G  + ++A  +  L+ N+ +    + ++S CG V+ A  +F+     + 
Sbjct: 143 KGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEV 202

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
             WN ++SG       ++S  LF  M K      P   T V +L+ C+  K +  G  ++
Sbjct: 203 VTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIY 262

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
                   VEP L     ++D+ A  G ++ A    +E    +   D   W ++++    
Sbjct: 263 NKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDE----MKTRDVISWTSIVTGFAN 318

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSY---NIYKEA 382
             +I++  + + ++ E     ++  +  Y   N +KE 
Sbjct: 319 TCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEV 356


>gi|449447707|ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
 gi|449510706|ref|XP_004163739.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
          Length = 563

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 268/454 (59%), Gaps = 21/454 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVV 58
           MI  Y     PK +   Y +M+  G   PNN+ +P ++++C  +LG   N    VH  V+
Sbjct: 113 MITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPHVLRSCPDVLG--SNATKMVHTQVL 170

Query: 59  KFGFGEDPFVVSSLLEFYS-LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           K GFG  P V +++++ YS     +G+AR +FD+  +R VV+WT M+ GY ++G+F++A 
Sbjct: 171 KSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLERTVVSWTAMISGYARLGNFDSAI 230

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM---------KPNESGLVS 168
           ELFE MPER+  +W+A++A  ++   F E + LF++M  + +         KPN++ L S
Sbjct: 231 ELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMVLLALEGNNNDRENKPNKTTLGS 290

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
            L+AC H G +  G W+H Y  + +  ++  ++ A++DMY KCG++  A  VF+ I+ K+
Sbjct: 291 ALSACGHTGMLHLGKWIHGYVFKTYPGQDSFISNALLDMYGKCGNLKVARRVFDMITLKN 350

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVK--SGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
             +WN++I+ +A++G +  +++LF  ++    G +P E TFV VL  CTH  +V  G + 
Sbjct: 351 LTSWNSLINCLALHGHSGSAIDLFAELIHCGDGVKPNEVTFVGVLNACTHGGLVEKGYSY 410

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
           FE M   Y +EPQ+EH+ C++DLL RAG  EEA + +    G     D  VWG+LL+AC+
Sbjct: 411 FEMMRRDYDIEPQIEHFGCLIDLLGRAGRFEEAMEVVR---GMNIEPDEVVWGSLLNACK 467

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPG 405
           I+G+ ++     +KL EM   +    ++  NIY E G WD E  KVR+L+ E    K PG
Sbjct: 468 IHGRSDLAEYSVKKLIEMDPKNGGYRIMLANIYAEFGKWD-EVRKVRRLLKEKNAYKTPG 526

Query: 406 CSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           CS IEV+  V +F + D  H    EIY+ + S +
Sbjct: 527 CSWIEVDNQVYQFYSFDMSHPSVEEIYKTLESMI 560



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 42/216 (19%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVS 168
           + D   AR +F+ +   N   ++A++ AY+   D K    L+R M   G ++PN      
Sbjct: 89  LADLCYARYIFDNLTSPNVFLYTAMITAYASYPDPKAAFLLYRNMVRRGAIRPNNFIYPH 148

Query: 169 VLTACAH-LGA-------------------ITQGLWVHSYAKRYH------------LEK 196
           VL +C   LG+                   + Q   V SY++               LE+
Sbjct: 149 VLRSCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSARQMFDEMLER 208

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
            V+  TA++  Y++ G+  SA+ +FE +  +D  AWNA+I+G A NG   +++ LF RMV
Sbjct: 209 TVVSWTAMISGYARLGNFDSAIELFESMPERDVPAWNALIAGCAQNGFFCEAIWLFKRMV 268

Query: 257 ---------KSGTQPTETTFVAVLTTCTHAKMVRDG 283
                        +P +TT  + L+ C H  M+  G
Sbjct: 269 LLALEGNNNDRENKPNKTTLGSALSACGHTGMLHLG 304


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 257/443 (58%), Gaps = 12/443 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP-------NNYTFPPLIKACVILGPLENFGMFV 53
           MI+ Y Q +  + +V  Y+ ML     P       + +T+P L+KAC     LE  G  V
Sbjct: 83  MIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALE-LGKQV 141

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H HVV+ G      V +SL+E Y+    +  A  +FD+  +RDVV+W  ++  + ++G  
Sbjct: 142 HTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  LF  MP++  V+W+A+++ Y+ + D+   +  FR MQ  G +P++  +V+VL AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+  G W+++Y KR+ +  +  +  A+++MY+KCG +  AL +F+G+++KD  +W+
Sbjct: 262 AQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWS 321

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            +I G+A +G A +++ LF  M K G  +P   TFV +L+ C++A +V +GL+ F+ M+ 
Sbjct: 322 TVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMND 381

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           VYGVEP +EHY CVVDLL R+G +  A   + +        DA VWG+LLSACR +G ++
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMP---VPADAKVWGSLLSACRSHGDVD 438

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
                  +L E+   D    V+  N+Y  A    +    RK I    M+K PGCS+IEV 
Sbjct: 439 TAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVG 498

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
            VV EF+AG+   ++ G +  V+
Sbjct: 499 NVVREFVAGEGLSSELGGLAGVL 521



 Score = 45.1 bits (105), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 37/233 (15%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E  +++ L AC     +   L VH +  R  + ++  LAT +V + +    V  A  VF 
Sbjct: 14  EDAVMARLRACVTFRDL---LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFA 70

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET-------TFVAVLTTC- 274
            + + +    NAMI   A N   + ++ ++ RM++  T P +        T+  +L  C 
Sbjct: 71  QVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG 130

Query: 275 ----------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
                      H  +VR G     + SA+  V+  L      +++  RAG +  A K  +
Sbjct: 131 GTAALELGKQVHTHVVRSGC----DSSAI--VQNSL------IEMYTRAGDLALAHKVFD 178

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           E    +   D   W  L+SA    G++     ++  + +  I  ++  V  Y 
Sbjct: 179 E----MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYT 227


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 162/435 (37%), Positives = 249/435 (57%), Gaps = 7/435 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLEN---FGMFVHAHV 57
           +IR   ++  P L++  Y  +L  G  P  +T P L+K+  +   +       + VH H 
Sbjct: 43  LIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTHA 102

Query: 58  VKFGFGEDPFVVSSLLEFYS-LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           VK G      V ++L+  ++  +  +     L   +   D  T+ T++  Y + G   +A
Sbjct: 103 VKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADA 162

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R LF++MP RNAVSWSA++  Y +  D +E L +F +MQ   ++P+++ LV VL ACA  
Sbjct: 163 RALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQH 222

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+ QG WVH Y K + ++ N+   TA+VDMYSKCG V  A+ VFE +  K+  AW  MI
Sbjct: 223 GALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMI 282

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G+AM+G   +++ LF +M  SG +P +  F+ VL  CTHA +V  G  LF++M   YG+
Sbjct: 283 KGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGI 342

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P++EHY C+VDLLAR G + EA++ I +KM      DA +WGAL++ CR +  +E    
Sbjct: 343 KPKIEHYGCMVDLLARNGFLYEAKEMI-QKMP--MEPDALIWGALMAGCRFHKNVEFAEY 399

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
           V +    +       +VL  NIY  +G    A ++R L+ E G+ K PGCS +EVNGV+ 
Sbjct: 400 VAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIH 459

Query: 417 EFLAGDNRHAQAGEI 431
           +F+ GD  H +  +I
Sbjct: 460 QFIVGDLSHPRIKDI 474


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  314 bits (804), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 253/435 (58%), Gaps = 4/435 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++      +   Y  M ++   P+  T   ++ A   L  L   G  +H  + + 
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLA-LGRKLHQSIEEM 285

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ Y     +  A+ LF+    + VV+WTTMV GY K G  E+A  LF
Sbjct: 286 GLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLF 345

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPE++ V W+A++  + +    KE L+LF +MQ   + P++  +V+ L+AC+ LGA+ 
Sbjct: 346 NEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALD 405

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y  +++L  NV L TA+VDMY+KCG++  A+ VFE +  +++  W A+I G+A
Sbjct: 406 VGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA 465

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G    ++  F  M+  G  P E TF+ VL+ C H  +V  G + F  M++ YG+ P+L
Sbjct: 466 LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKL 525

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+C+VDLL RAG +EEAE+ I          DA VWGAL    RI+G + +G R   K
Sbjct: 526 KHYSCLVDLLGRAGFLEEAEELIRSMP---FEPDAVVWGALFFGSRIHGNVHMGERAASK 582

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   D   +VL  N+Y +A    +A KVRK++ E G++K PGCS IE+NG+V +F+ 
Sbjct: 583 LLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFII 642

Query: 421 GDNRHAQAGEIYRVI 435
            D  H Q+ +IY  +
Sbjct: 643 RDKSHPQSEKIYECL 657



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 184/374 (49%), Gaps = 21/374 (5%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           IRGY+++  P  +V  Y +ML  G   P+NYT+P L K C     L      +  HV++ 
Sbjct: 126 IRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS-LSWTANEILGHVIQL 184

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV ++++       ++  AR LFD+S  RD+V+W ++++GY + G  + A +L+
Sbjct: 185 GFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLY 244

Query: 121 EKMPERNA----VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK---PNESGLVSVLTAC 173
            KM E N     V+   +++A +++ +      L + ++E+G+    P  + L+ +   C
Sbjct: 245 YKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKC 304

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            ++ A    +   +  K     K V+  T +V  Y+K G + SA+ +F  +  KD   WN
Sbjct: 305 KNIEA--AKILFENMTK-----KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWN 357

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           A+I G      +K++L LF  M  S   P + T V  L+ C+    +  G+ +   +   
Sbjct: 358 ALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDK- 416

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           + +   +     +VD+ A+ G +++A +  EE    + G ++  W A++    ++G+   
Sbjct: 417 HNLTMNVALGTALVDMYAKCGNIKKAIQVFEE----MPGRNSLTWTAIICGLALHGQPHA 472

Query: 354 GNRVWRKLAEMGIT 367
               + ++  +G+ 
Sbjct: 473 AISYFSEMISIGLV 486


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  313 bits (803), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 166/409 (40%), Positives = 239/409 (58%), Gaps = 5/409 (1%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+ YTF  ++KAC  L  +   G  VH  V K+G   + FV +SL++ Y  V     A+ 
Sbjct: 125 PDEYTFTSVLKACAGLAQVLE-GQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQK 183

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           LFD+   RDVV+W T++ GY   G  + AR +F+ M E+N VSWS +++ Y+R   + + 
Sbjct: 184 LFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADA 243

Query: 148 LSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           + LFRQMQ E G+ PN+  LVSVL+ACAHLGA+  G W+H + +R  +E  + L  A+ D
Sbjct: 244 IELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALAD 303

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY+KCG V  A  VF  +  +D  +W+ +I G+AM G A ++   F  M++ G +P + +
Sbjct: 304 MYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDIS 363

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           F+ +LT CTHA +V  GL  F+ M  VYG+ P++EHY CVVDLL+RAG +++AE  I   
Sbjct: 364 FMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM 423

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386
                  +  VWGALL  CRIY   E G RV  ++ E+      + V   N+Y   G   
Sbjct: 424 P---MQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRLD 480

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           +A   R  + +    K PGCS IE+N  V EF  GD+ H Q+  IY +I
Sbjct: 481 DAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMI 529



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 104/235 (44%), Gaps = 34/235 (14%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  PN+ T   ++ AC  LG L+  G ++H  + +       F+ ++L + Y+    +  
Sbjct: 255 GLAPNDVTLVSVLSACAHLGALD-LGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLE 313

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A+ +F +  +RDV++W+ ++ G                            M  Y+     
Sbjct: 314 AKGVFHEMHERDVISWSIIIMGLA--------------------------MYGYA----- 342

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEKNVILATA 203
            E  + F +M E G++PN+   + +LTAC H G + +GL +     + Y +   +     
Sbjct: 343 NEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGC 402

Query: 204 VVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           VVD+ S+ G +  A S+   +    +   W A++ G  +  DA++   +  R+++
Sbjct: 403 VVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILE 457



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 8/181 (4%)

Query: 199 ILATAVVDMYSKCGHV-HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR--M 255
           I+A   + + S  G++ HS L     +S  +  A+NA++   + +     ++  F+   +
Sbjct: 59  IIAVKFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLV 118

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           + +   P E TF +VL  C     V +G  +   ++  YG E  L     +VDL  + G 
Sbjct: 119 LPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTK-YGCESNLFVRNSLVDLYFKVGC 177

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
              A+K  +E +      D   W  L+S     G ++    V+  + E  +  +ST +  
Sbjct: 178 NCIAQKLFDEMV----VRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISG 233

Query: 376 Y 376
           Y
Sbjct: 234 Y 234


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  313 bits (803), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 162/385 (42%), Positives = 236/385 (61%), Gaps = 5/385 (1%)

Query: 48  NFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY 107
           N G  +H+  +K G      + ++L+  YS    +  AR LFD++   D+++W +M+ GY
Sbjct: 393 NMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGY 452

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
            K    +NA+ +F+ MPE++ VSWS++++ Y++   F E L+LF++MQ  G KP+E+ LV
Sbjct: 453 LKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLV 512

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           SV++ACA L A+ QG WVH+Y KR  L  NVIL T ++DMY KCG V +AL VF G+  K
Sbjct: 513 SVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEK 572

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
               WNA+I G+AMNG  + SL++F  M K    P E TF+ VL  C H  +V +G + F
Sbjct: 573 GISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHF 632

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
            +M   + ++P ++HY C+VDLL RAG ++EAE+ +          D   WGALL AC+ 
Sbjct: 633 YSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP---MTPDVATWGALLGACKK 689

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGC 406
           +G  E+G RV RKL E+       HVL  NIY   G WD +  ++R ++++  + K PGC
Sbjct: 690 HGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWD-DVLEIRGMMTKHRVLKIPGC 748

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEI 431
           S+IE NGV+ EFLAGD  H     I
Sbjct: 749 SMIEANGVIHEFLAGDKTHPDMDAI 773



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 201/438 (45%), Gaps = 90/438 (20%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           R Y+Q N P  +   Y  ML      +NYT+P LI+AC I    E     VH HV+K GF
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRS-EWEAKQVHNHVLKLGF 244

Query: 63  GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
             D +V ++L+  +S+   M  A  +F++S   D V+W +++ GY ++G+ E A+ ++ +
Sbjct: 245 DSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQ 304

Query: 123 MPER-------------------------------NAVSWSAIMAAYSRISDFKEVLSLF 151
           MPER                               + V+WSA++A + +   ++E +  F
Sbjct: 305 MPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTF 364

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
             M ++G+  +E   VS L+ACA+L  +  G  +HS + +   E  + L  A++ MYSKC
Sbjct: 365 VGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC 424

Query: 212 GH-------------------------------VHSALSVFEGISNKDAGAWNAMISGVA 240
           G                                V +A ++F+ +  KD  +W++MISG A
Sbjct: 425 GDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYA 484

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNLFEN 289
            N    ++L LF  M  SG +P ETT V+V++ C            HA + R+GL +   
Sbjct: 485 QNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI--- 541

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            + + G          ++D+  + G VE A   +E   G +  G  + W AL+    + G
Sbjct: 542 -NVILGTT--------LIDMYMKCGCVETA---LEVFYGMIEKG-ISTWNALILGLAMNG 588

Query: 350 KIEVGNRVWRKLAEMGIT 367
            +E    ++  + +  +T
Sbjct: 589 LVESSLDMFSNMKKCHVT 606



 Score = 38.1 bits (87), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 35/198 (17%), Positives = 86/198 (43%), Gaps = 15/198 (7%)

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           KMP +      A   AY + +      +L++ M    +  +      ++ AC+   +  +
Sbjct: 178 KMPAK------ASRRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWE 231

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
              VH++  +   + +V +   +++ +S C ++  A  VF   S  D+ +WN++++G   
Sbjct: 232 AKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIE 291

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
            G+ +++  ++ +M +     + +  V          +V +   LF+ M     +E  + 
Sbjct: 292 IGNVEEAKHIYHQMPERSIIASNSMIVLF----GMRGLVVEACKLFDEM-----LEKDMV 342

Query: 302 HYACVVDLLARAGMVEEA 319
            ++ ++    +  M EEA
Sbjct: 343 TWSALIACFQQNEMYEEA 360


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  313 bits (803), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 161/416 (38%), Positives = 245/416 (58%), Gaps = 7/416 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML     P+NY    ++KAC     L   G  VH+  +K G   +  V   ++E Y 
Sbjct: 135 YSRMLHDSILPDNYLMASILKACGSQLALRE-GREVHSRALKLGLSSNRLVRLRIMELYG 193

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++G AR +F++ P+ DVV  T M+  Y   G  E A  +F ++  ++ V W+A++  
Sbjct: 194 KCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDG 252

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           + R  +    L  FR MQ   ++PNE  +V VL+AC+ LGA+  G WVHSY +++ +E N
Sbjct: 253 FVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELN 312

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +  A+++MYS+CG +  A +VF+ + ++D   +N MISG++MNG +++++ELF  M+ 
Sbjct: 313 LFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIG 372

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +PT  TFV VL  C+H  +V  G  +F +M+  YGVEPQ+EHY C+VDLL R G +E
Sbjct: 373 RRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLE 432

Query: 318 EAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           EA   I   KM      D  + G LLSAC+++  +E+G +V + L + G  D  T+VL  
Sbjct: 433 EAYDLIRTMKM----TPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLS 488

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           ++Y  +G   EA +VR  + E GM+K+PGCS IEVN  + EFL GD RH +   IY
Sbjct: 489 HVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIY 544



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 143/311 (45%), Gaps = 14/311 (4%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +++ G  +DPF+V  LL   S  H +  A  +F  + + +V  +T ++DG+   G+
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ----EVGMKPNESGLVS 168
           + +A +L+ +M   + +  + +MA+  +    +  L   R++     ++G+  N    + 
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLR 187

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           ++      G +     V        + ++V+ +T ++  YS  G V  A +VF  +  KD
Sbjct: 188 IMELYGKCGELGDARRVFE-----EMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKD 242

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
              W AMI G   N +  ++LE F  M     +P E T V VL+ C+    +  G  +  
Sbjct: 243 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 302

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M   + +E  L     ++++ +R G ++EA+   +E    +   D   +  ++S   + 
Sbjct: 303 YMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDE----MKDRDVITYNTMISGLSMN 357

Query: 349 GKIEVGNRVWR 359
           GK      ++R
Sbjct: 358 GKSRQAIELFR 368



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 72/164 (43%), Gaps = 4/164 (2%)

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           ++  ++S+L    H   I Q L +H+   R    ++  +   ++   SKC  +  A  +F
Sbjct: 48  DQKQIISLLQRSKH---INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 104

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           +   N +   + A+I G   +G+   +++L+ RM+     P      ++L  C     +R
Sbjct: 105 QYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALR 164

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           +G  +  + +   G+         +++L  + G + +A +  EE
Sbjct: 165 EGREV-HSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEE 207


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  313 bits (803), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 253/435 (58%), Gaps = 4/435 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++      +   Y  M ++   P+  T   ++ A   L  L   G  +H  + + 
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLA-LGRKLHQSIEEM 285

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ Y     +  A+ LF+    + VV+WTTMV GY K G  E+A  LF
Sbjct: 286 GLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLF 345

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPE++ V W+A++  + +    KE L+LF +MQ   + P++  +V+ L+AC+ LGA+ 
Sbjct: 346 NEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALD 405

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y  +++L  NV L TA+VDMY+KCG++  A+ VFE +  +++  W A+I G+A
Sbjct: 406 VGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLA 465

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G    ++  F  M+  G  P E TF+ VL+ C H  +V  G + F  M++ YG+ P+L
Sbjct: 466 LHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKL 525

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+C+VDLL RAG +EEAE+ I          DA VWGAL    RI+G + +G R   K
Sbjct: 526 KHYSCLVDLLGRAGFLEEAEELIRSMP---FEPDAVVWGALFFGSRIHGNVHMGERAASK 582

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   D   +VL  N+Y +A    +A KVRK++ E G++K PGCS IE+NG+V +F+ 
Sbjct: 583 LLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYDFII 642

Query: 421 GDNRHAQAGEIYRVI 435
            D  H Q+ +IY  +
Sbjct: 643 RDKSHPQSEKIYECL 657



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 184/374 (49%), Gaps = 21/374 (5%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           IRGY+++  P  +V  Y +ML  G   P+NYT+P L K C     L      +  HV++ 
Sbjct: 126 IRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFS-LSWTANEILGHVIQL 184

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV ++++       ++  AR LFD+S  RD+V+W ++++GY + G  + A +L+
Sbjct: 185 GFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLY 244

Query: 121 EKMPERNA----VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK---PNESGLVSVLTAC 173
            KM E N     V+   +++A +++ +      L + ++E+G+    P  + L+ +   C
Sbjct: 245 YKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKC 304

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            ++ A    +   +  K     K V+  T +V  Y+K G + SA+ +F  +  KD   WN
Sbjct: 305 KNIEA--AKILFENMTK-----KTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWN 357

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           A+I G      +K++L LF  M  S   P + T V  L+ C+    +  G+ +   +   
Sbjct: 358 ALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDK- 416

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           + +   +     +VD+ A+ G +++A +  EE    + G ++  W A++    ++G+   
Sbjct: 417 HNLTMNVALGTALVDMYAKCGNIKKAIQVFEE----MPGRNSLTWTAIICGLALHGQPHA 472

Query: 354 GNRVWRKLAEMGIT 367
               + ++  +G+ 
Sbjct: 473 AISYFSEMISIGLV 486


>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
          Length = 531

 Score =  313 bits (803), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 168/441 (38%), Positives = 252/441 (57%), Gaps = 15/441 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG    N P  S+  Y  +L  G  P+NYT+  ++K C  L  +   G  VH  V+K 
Sbjct: 94  MIRGLTLGNCPYDSLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFE-GKQVHCQVIKA 152

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + +SL+  Y+    +  A  +  +    +V+   +M+ GY   G  E AR +F
Sbjct: 153 GVAPDTHIHTSLIHMYAKSDCLACAEGVLAECSQENVLAINSMISGYMSQGHVEKARAMF 212

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV---GMKPNESGLVSVLTACAHLG 177
           +KM  ++A +WS ++  Y++    +E L +FR+M  V   G++PNES LVS L+A A LG
Sbjct: 213 DKMGAKDAATWSGMITGYTKNGMHEEALVMFREMMMVSNSGVQPNESALVSSLSATACLG 272

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ QG W+H+Y +R   + ++ L T +VDMY+KCG +H +  +F  +  +D   W  M+S
Sbjct: 273 ALDQGRWIHAYIRRIGAKISITLGTGLVDMYAKCGSIHCSYKLFREMQQRDVVTWGVMMS 332

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G AM+G A+K  +LFD MV  GT+P E  FVA+L+ C+HA  +  G + F  M   +G+ 
Sbjct: 333 GFAMHGQARKCFQLFDEMVAGGTRPNEVIFVAILSACSHAGYLELGHHYFNQMVTDFGIR 392

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFI----EEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           P +EHY C+VDLL RAG + EAE+ I    EE         A +WGALLSACRI+  +  
Sbjct: 393 PSVEHYGCMVDLLGRAGQLAEAEELIISMPEEP-------TAVIWGALLSACRIHKDLRR 445

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G R +R+L ++       + L+  ++  AG   EA+ V + I E  ++   G S IE+NG
Sbjct: 446 GRRAFRQLMQLEPLRGDRYKLAGQMFSSAGEKEEADNVTRFIKENELETTRGSSFIEING 505

Query: 414 VVEEFLAGDNRHAQAGEIYRV 434
           VV EF+ GD  H +A E+YR+
Sbjct: 506 VVHEFVVGDADHHKAREMYRM 526



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 123/282 (43%), Gaps = 39/282 (13%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++D Y  M     A  +F ++P  +  +++A++   +  +   + L L+ ++   G+ P+
Sbjct: 63  LLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDSLLLYNKLLLGGLTPD 122

Query: 163 ESGLVSVLTACAHLGAITQGLWVHS--------------------YAKRYHL-------- 194
                 VL  C+HL AI +G  VH                     YAK   L        
Sbjct: 123 NYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVLA 182

Query: 195 ---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
              ++NV+   +++  Y   GHV  A ++F+ +  KDA  W+ MI+G   NG  +++L +
Sbjct: 183 ECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALVM 242

Query: 252 FDRMV---KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           F  M+    SG QP E+  V+ L+       +  G  +   +  + G +  +     +VD
Sbjct: 243 FREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRI-GAKISITLGTGLVD 301

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           + A+ G +  + K   E    +   D   WG ++S   ++G+
Sbjct: 302 MYAKCGSIHCSYKLFRE----MQQRDVVTWGVMMSGFAMHGQ 339



 Score = 45.8 bits (107), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 1/125 (0%)

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           A  ++D Y     ++ AL VF  I + D  A+NAMI G+ +      SL L+++++  G 
Sbjct: 60  AGRLLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGNCPYDSLLLYNKLLLGGL 119

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P   T+  VL  C+H K + +G  +   +    GV P    +  ++ + A++  +  AE
Sbjct: 120 TPDNYTYTFVLKVCSHLKAIFEGKQVHCQVIKA-GVAPDTHIHTSLIHMYAKSDCLACAE 178

Query: 321 KFIEE 325
             + E
Sbjct: 179 GVLAE 183


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  313 bits (803), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 162/385 (42%), Positives = 236/385 (61%), Gaps = 5/385 (1%)

Query: 48  NFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY 107
           N G  +H+  +K G      + ++L+  YS    +  AR LFD++   D+++W +M+ GY
Sbjct: 258 NMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGY 317

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
            K    +NA+ +F+ MPE++ VSWS++++ Y++   F E L+LF++MQ  G KP+E+ LV
Sbjct: 318 LKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLV 377

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           SV++ACA L A+ QG WVH+Y KR  L  NVIL T ++DMY KCG V +AL VF G+  K
Sbjct: 378 SVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEK 437

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
               WNA+I G+AMNG  + SL++F  M K    P E TF+ VL  C H  +V +G + F
Sbjct: 438 GISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHF 497

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
            +M   + ++P ++HY C+VDLL RAG ++EAE+ +          D   WGALL AC+ 
Sbjct: 498 YSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP---MTPDVATWGALLGACKK 554

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGC 406
           +G  E+G RV RKL E+       HVL  NIY   G WD +  ++R ++++  + K PGC
Sbjct: 555 HGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWD-DVLEIRGMMTKHRVLKIPGC 613

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEI 431
           S+IE NGV+ EFLAGD  H     I
Sbjct: 614 SMIEANGVIHEFLAGDKTHPDMDAI 638



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 201/440 (45%), Gaps = 90/440 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+Q N P  +   Y  ML      +NYT+P LI+AC I    E     VH HV+K 
Sbjct: 49  MIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRS-EWEAKQVHNHVLKL 107

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V ++L+  +S+   M  A  +F++S   D V+W +++ GY ++G+ E A+ ++
Sbjct: 108 GFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIY 167

Query: 121 EKMPER-------------------------------NAVSWSAIMAAYSRISDFKEVLS 149
            +MPER                               + V+WSA++A + +   ++E + 
Sbjct: 168 HQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIR 227

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
            F  M ++G+  +E   VS L+ACA+L  +  G  +HS + +   E  + L  A++ MYS
Sbjct: 228 TFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYS 287

Query: 210 KCGH-------------------------------VHSALSVFEGISNKDAGAWNAMISG 238
           KCG                                V +A ++F+ +  KD  +W++MISG
Sbjct: 288 KCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISG 347

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNLF 287
            A N    ++L LF  M  SG +P ETT V+V++ C            HA + R+GL + 
Sbjct: 348 YAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTI- 406

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
              + + G          ++D+  + G VE A     E   G+     + W AL+    +
Sbjct: 407 ---NVILGTT--------LIDMYMKCGCVETA----LEVFYGMIEKGISTWNALILGLAM 451

Query: 348 YGKIEVGNRVWRKLAEMGIT 367
            G +E    ++  + +  +T
Sbjct: 452 NGLVESSLDMFSNMKKCHVT 471



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 35/204 (17%), Positives = 90/204 (44%), Gaps = 9/204 (4%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
            R +F  +   N   W+ ++ AY + +      +L++ M    +  +      ++ AC+ 
Sbjct: 31  TRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSI 90

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             +  +   VH++  +   + +V +   +++ +S C ++  A  VF   S  D+ +WN++
Sbjct: 91  RRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSI 150

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ++G    G+ +++  ++ +M +     + +  V          +V +   LF+ M     
Sbjct: 151 LAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLF----GMRGLVVEACKLFDEM----- 201

Query: 296 VEPQLEHYACVVDLLARAGMVEEA 319
           +E  +  ++ ++    +  M EEA
Sbjct: 202 LEKDMVTWSALIACFQQNEMYEEA 225


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/504 (35%), Positives = 268/504 (53%), Gaps = 67/504 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY Q    K  +  +  M  +   PN +TFP ++K+CV +  L+  G  VH  V+K 
Sbjct: 22  MFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVKINALKE-GEEVHCFVIKS 80

Query: 61  G---------------------------FGE----DPFVVSSLLEFYSLVHKMGTARALF 89
           G                           FGE    +    ++++  Y     + TAR LF
Sbjct: 81  GFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWTAMINGYITCCDLVTARRLF 140

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP------------------------- 124
           D +P+RD+V W TM+ GY +  D   ARELF+KMP                         
Sbjct: 141 DLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMSWNTVLNGYASNGDVMACER 200

Query: 125 ------ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLG 177
                 ERN  SW+A++  Y+R   F EVLS F++M   G + PN++ LV+VL+ACA LG
Sbjct: 201 LFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLG 260

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+  G WVH YA+ +  + NV +  A++DMY+KCG V +AL VF+ + NKD  +WN +I 
Sbjct: 261 ALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWNTIIG 320

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+A++G    +L LF  M  +G  P   TF+ +L  CTH  +V DG + F++M+  Y + 
Sbjct: 321 GLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIV 380

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY C+VDLL RAG++  A  FI  KM      DA +W ALL ACR+Y  +E+    
Sbjct: 381 PRIEHYGCIVDLLGRAGLLAHAVDFI-RKMP--IEADAVIWAALLGACRVYKNVELAELA 437

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             KL E    + + +V+  NIY + G   +  +++  + +TG KK PGCS+IEVN  + E
Sbjct: 438 LEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFKKLPGCSLIEVNDYLVE 497

Query: 418 FLAGDNRHAQAGEIYRVIHSFLKM 441
           F + D RH +  +IY  + +  K+
Sbjct: 498 FYSLDERHPEKEQIYGTLRTLTKL 521



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 79/140 (56%)

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           ENA ++F+++PE NA  W+A+   YS+    K+V+ LFRQM+ + + PN      +L +C
Sbjct: 2   ENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSC 61

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
             + A+ +G  VH +  +     N  +AT ++DMY+  G +H+A  VF  +  ++  AW 
Sbjct: 62  VKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAWT 121

Query: 234 AMISGVAMNGDAKKSLELFD 253
           AMI+G     D   +  LFD
Sbjct: 122 AMINGYITCCDLVTARRLFD 141



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           + +A  VF+ I   +A  WNAM  G + N   K  + LF +M      P   TF  +L +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 274 CTHAKMVRDG 283
           C     +++G
Sbjct: 61  CVKINALKEG 70


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  313 bits (801), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 162/440 (36%), Positives = 262/440 (59%), Gaps = 13/440 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-------FEPNNYTFPPLIKACVILGPLENFGMFV 53
           MIR +       L++  Y +ML +          P+ +TFP +IK+C  L    N G  V
Sbjct: 83  MIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKSCSGL-VCYNLGKQV 141

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HAH+ KFG   +  + ++L++ Y+    +  A  +FD   +RD ++W +++ G+  +G  
Sbjct: 142 HAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQM 201

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  LF+ MP R  VSW+A+++ Y+R+  + + L +FRQMQ VG++P+E  ++SVL AC
Sbjct: 202 RKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPAC 261

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+  G W+H Y  R  L +   +  A+++MYSKCG +  A  +F+ +S  D  +W+
Sbjct: 262 AQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWS 321

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            MI G+A +G A++++ELF RM K+  +P   TF+ +L+ C HA    +GL  F++MS  
Sbjct: 322 TMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKD 381

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           Y +EP++EHY C+VD+L RAG + +A   I EKM      D+ +WG+LLS+CR +  +++
Sbjct: 382 YHIEPEVEHYGCLVDILGRAGRLSQALDVI-EKMP--MKPDSKIWGSLLSSCRTHSNLDI 438

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
                  L E+   D   +VL  NIY + A WD   +++RKLI    MKK PG S+I++N
Sbjct: 439 AIIAMEHLEELEPDDTGNYVLLSNIYADLAKWD-GVSRMRKLIKSKSMKKTPGSSLIDIN 497

Query: 413 GVVEEFLAGDNRHAQAGEIY 432
            VV+EF++ D+    + +I+
Sbjct: 498 NVVQEFVSWDDSKPFSRDIF 517



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 47/292 (16%)

Query: 33  FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS 92
           F P+++ C  +  L++    +HAHV+K+   +  F+V                       
Sbjct: 17  FVPILQNCKNIVELKS----IHAHVIKYSLSQSSFLV----------------------- 49

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR-------ISDFK 145
                   T MVD   K  D   A  LF+++ E N   ++A++ A++        I  +K
Sbjct: 50  --------TKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYK 101

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E+L L     E  + P+      V+ +C+ L     G  VH++  ++  + N+ +  A++
Sbjct: 102 EMLRLKDPESENPIFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALI 161

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY+KC  +  A  VF+G+  +DA +WN++ISG    G  +K+  LFD M       T  
Sbjct: 162 DMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLM----PYRTIV 217

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           ++ A+++  T      D L +F  M  V GVEP       V+   A+ G +E
Sbjct: 218 SWTAMISGYTRLGSYADALYVFRQMQIV-GVEPDEISIISVLPACAQLGALE 268


>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 538

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/446 (36%), Positives = 264/446 (59%), Gaps = 7/446 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR    +  P LS+F +  +      P++Y+FP  +KA + L   +  G+  H+  ++F
Sbjct: 81  IIRALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKT-GLQFHSQAIRF 139

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMVDGYGKMGDFENARE 118
           G      V+ SL+  YS  H +  AR LFD  P   R+V  W  M+  Y K+ D  NA+ 
Sbjct: 140 GLHSHLHVLVSLIRMYSSSH-ISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQH 198

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+ MP+RN +SW+A+++ Y+ I+   + +++FR MQ   + P+E  L++VL+ACA LGA
Sbjct: 199 LFDSMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGA 258

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G W+ +Y   + L +NV L  A++DMY+K G++  AL +FE + +K    W  MI+G
Sbjct: 259 LELGEWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAG 318

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A++G   ++LE+F RM +   +P E TF+AVL+ C+H  +V+   + F NM + Y ++P
Sbjct: 319 LALHGLGTQALEMFSRMERDRVKPNEITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQP 378

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           ++EHY C++DLL RAG ++EA++ +++        +A +WG+LL+A   +G   +G R  
Sbjct: 379 KIEHYGCMIDLLGRAGYLQEAQQLLQQMP---FEPNAAIWGSLLAASYTHGDAMLGERTL 435

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           + L E+   +   + L  NIY   G    +  VRK++ + G+KK PG S IEVN  V EF
Sbjct: 436 KHLIELEPNNSGNYALLSNIYASLGRWKASRIVRKMMRDRGVKKIPGGSFIEVNNRVNEF 495

Query: 419 LAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +AG+  H Q  EIY VI+   + S L
Sbjct: 496 IAGETSHPQFDEIYEVIYKINEQSRL 521



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/277 (21%), Positives = 110/277 (39%), Gaps = 36/277 (12%)

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-NAVSWSAIM 135
           +L H   T   +  ++ D D +  +  +     +G    A  LF  +    N   ++ I+
Sbjct: 23  NLKHLHQTHAFMLCRALDHDNLLLSLFIQSSSSLGFSLYAYSLFTSLTHPPNIFLYNTII 82

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
            A S        + LF ++Q   ++P+       L A   L A   GL  HS A R+ L 
Sbjct: 83  RALSLSPQPSLSIFLFNRIQSARLRPDSYSFPFALKAVIRLSATKTGLQFHSQAIRFGLH 142

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            ++ +  +++ MYS   H+  A  +F+GI  + ++   WNAM++  A   D   +  LFD
Sbjct: 143 SHLHVLVSLIRMYSS-SHISDARKLFDGIPLTARNVALWNAMLTSYAKICDMPNAQHLFD 201

Query: 254 RMVK-------------------------------SGTQPTETTFVAVLTTCTHAKMVRD 282
            M +                                   P E T +AVL+ C     +  
Sbjct: 202 SMPQRNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALEL 261

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           G     N   ++G+   +  +  ++D+ A++G ++ A
Sbjct: 262 G-EWIRNYIDIHGLHRNVPLHNALIDMYAKSGNIKRA 297


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 163/441 (36%), Positives = 263/441 (59%), Gaps = 24/441 (5%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           L VFC + + +   EPN +TFP ++KAC ++  L   G  VH  ++KFG  +D FVV++L
Sbjct: 101 LLVFCQM-LSEATVEPNQFTFPSVLKACAVMARLAE-GKQVHGLLLKFGLVDDEFVVTNL 158

Query: 73  LEFYSLVHKMGTARALF----------------DKSPDRDVVTWTTMVDGYGKMGDFENA 116
           L  Y +   M  A  LF                ++  + +VV    MVDGY ++G+ + A
Sbjct: 159 LRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAA 218

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAH 175
           RELF++M +R+ VSW+ +++ Y++   +KE + +F +M ++G + PN   LVSVL A + 
Sbjct: 219 RELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISR 278

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LG +  G WVH YA++  +  + +L +A+VDMY+KCG +  A+ VFE +   +   WNA+
Sbjct: 279 LGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAV 338

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+AM+G A        RM K G  P++ T++A+L+ C+HA +V +G + F +M    G
Sbjct: 339 IGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVG 398

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++P++EHY C+VDLL RAG +EEAE+ I   +      D  +W ALL A +++  I++G 
Sbjct: 399 LKPKIEHYGCMVDLLGRAGYLEEAEELI---LNMPMKPDDVIWKALLGASKMHKNIKIGM 455

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           R    L +M   D   +V   N+Y  +G WD  A  VR ++ +  ++K PGCS IE++GV
Sbjct: 456 RAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVA-AVRLMMKDMDIRKDPGCSWIEIDGV 514

Query: 415 VEEFLAGDNRHAQAGEIYRVI 435
           + EFL  D+ H++A +I+ ++
Sbjct: 515 IHEFLVEDDSHSRAKDIHSML 535



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 171/409 (41%), Gaps = 102/409 (24%)

Query: 26  FEPNNYTF-----PPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF--YSL 78
           F+PN  ++      P IKAC  +  L+     VHA +VK G   D  + + +L     S 
Sbjct: 6   FQPNTASYYPRLDVPQIKACKSMRELKQ----VHAFLVKTGQTHDNAIATEILRLSATSD 61

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
              +G A ++FD+ P+R+   W T++    +  D    R L                   
Sbjct: 62  FRDIGYALSVFDQLPERNCFAWNTVIRALAETQD----RHL------------------- 98

Query: 139 SRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL--- 194
                  + L +F QM  E  ++PN+    SVL ACA +  + +G  VH    ++ L   
Sbjct: 99  -------DALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDD 151

Query: 195 --------------------------------------------EKNVILATAVVDMYSK 210
                                                       E NV+L   +VD Y++
Sbjct: 152 EFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYAR 211

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVA 269
            G++ +A  +F+ ++ +   +WN MISG A NG  K+++E+F RM++ G   P   T V+
Sbjct: 212 VGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVS 271

Query: 270 VLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           VL   +   ++  G  ++L+   + +  ++  L   + +VD+ A+ G +E+A +  E   
Sbjct: 272 VLPAISRLGVLELGKWVHLYAEKNKIR-IDDVLG--SALVDMYAKCGSIEKAIQVFER-- 326

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             L   +   W A++    ++GK    N ++  L+ M     S   ++Y
Sbjct: 327 --LPQNNVITWNAVIGGLAMHGK---ANDIFNYLSRMEKCGISPSDVTY 370



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 110/249 (44%), Gaps = 35/249 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q  F K ++  +  M+ MG   PN  T   ++ A   LG LE  G +VH +  K
Sbjct: 236 MISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLE-LGKWVHLYAEK 294

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                D  + S+L++ Y+    +  A  +F++ P  +V+TW  ++ G             
Sbjct: 295 NKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGG------------- 341

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                          +A + + +D    LS   +M++ G+ P++   +++L+AC+H G +
Sbjct: 342 ---------------LAMHGKANDIFNYLS---RMEKCGISPSDVTYIAILSACSHAGLV 383

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMIS 237
            +G  + +       L+  +     +VD+  + G++  A  +   +  K D   W A++ 
Sbjct: 384 DEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLG 443

Query: 238 GVAMNGDAK 246
              M+ + K
Sbjct: 444 ASKMHKNIK 452


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/443 (35%), Positives = 256/443 (57%), Gaps = 12/443 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP-------NNYTFPPLIKACVILGPLENFGMFV 53
           MI+ Y Q +  + +V  Y+ ML     P       + +T+P L+KAC     LE  G  V
Sbjct: 83  MIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACGGTAALE-LGKQV 141

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H HVV+ G      V +SL+E Y+    +  A  +FD+  +RDVV+W  ++  + ++G  
Sbjct: 142 HTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVSWNMLISAHARLGQM 201

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  LF  MP++  V+W+A+++ Y+ + D+   +  FR MQ  G +P++  +V+VL AC
Sbjct: 202 RKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGFEPDDVSIVAVLPAC 261

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LG +  G W+++Y KR+ +  +  +  A+++MY+KCG +  AL +F+G+++KD  +W+
Sbjct: 262 AQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQLFDGMADKDVISWS 321

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            +I G+A +G A +++ LF  M K G  +P   TFV +L+ C++A +V +GL+ F+ M+ 
Sbjct: 322 TVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAGLVDEGLSHFDRMND 381

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           VYGVEP +EHY CVVDLL R+G +  A   + +        DA VWG+LLSACR +G ++
Sbjct: 382 VYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMP---VPADAKVWGSLLSACRSHGDVD 438

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
                  +L E+   D    V+  N+Y  A    +    RK I    M+K PGCS+IEV 
Sbjct: 439 TAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMRKTPGCSLIEVG 498

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
            VV EF+AG+   ++ G +  V+
Sbjct: 499 NVVREFVAGEGLSSELGGLAGVL 521



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 95/233 (40%), Gaps = 37/233 (15%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E  +++ L AC     +   L VH +  R  + ++  LAT +V + +    V  A  VF 
Sbjct: 14  EDAVMARLRACVTFRDL---LRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFA 70

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET-------TFVAVLTTC- 274
            + + +    NAMI   A N   + ++ ++ RM++  T P +        T+  +L  C 
Sbjct: 71  QVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPFLLKACG 130

Query: 275 ----------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
                      H  +VR G     + SA+  V+  L      +++  RAG +  A K  +
Sbjct: 131 GTAALELGKQVHTHVVRSGC----DSSAI--VQNSL------IEMYTRAGDLALAHKVFD 178

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           E    +   D   W  L+SA    G++     ++  + +  I  ++  V  Y 
Sbjct: 179 E----MRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYT 227


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 264/513 (51%), Gaps = 79/513 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY QAN     V  +  M   G  PN +TFP ++K+C      +  G  VH  V K 
Sbjct: 91  MFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKE-GEEVHCVVAKR 149

Query: 61  GFGEDPFVVSSLLEFYSL---------------------------------VHKMGTARA 87
           GF  + FV  +L+  YSL                                    M +AR 
Sbjct: 150 GFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACRDMVSARR 209

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS-------- 139
           LFD +P RDVV W  +V GY ++GD   ARELF++MP+R+ +SW+ +++ Y+        
Sbjct: 210 LFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESF 269

Query: 140 -----------------------RISDFKEVLSLFRQM-----------QEVGMKPNESG 165
                                  R   FKE L  F++M            +  + PN+  
Sbjct: 270 VKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYT 329

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           +V+VLTAC+ LG +  G WVH YA+    + N+ +  A++DMY+KCG +  AL VF+G+ 
Sbjct: 330 VVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLD 389

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
            KD   WN +I+G+AM+G    +L LF+RM ++G +P   TFV +L+ CTH  +VR+GL 
Sbjct: 390 VKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLL 449

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
            F++M   Y + PQ+EHY C+VDLL RAG++++A   +  KM      DA +W ALL AC
Sbjct: 450 HFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIV-RKMP--MEPDAVIWAALLGAC 506

Query: 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405
           R+Y  +E+     ++L E+   +    V+  NIYK+ G   +  +++  + +TG +K PG
Sbjct: 507 RMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRDTGFRKVPG 566

Query: 406 CSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           CSVI  N  + EF + D RH +   IYR +   
Sbjct: 567 CSVIGCNDSMVEFYSLDERHPETDSIYRALQGL 599



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 126/338 (37%), Gaps = 66/338 (19%)

Query: 74  EFYSLVHKMGTARALFDKSPD--------RDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           +F SL+   GT   L               D VT  + +    ++G    AR +F+K  +
Sbjct: 24  KFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVT-PSFITACARLGGIRRARRVFDKTAQ 82

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
            N  +W+A+   Y++ +   +V+ LF +M   G  PN      V+ +CA   A  +G  V
Sbjct: 83  PNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEEV 142

Query: 186 HSYAKRYHLEKNVILATAVVDMYS---------------------------------KCG 212
           H    +   + N  +  A++ MYS                                  C 
Sbjct: 143 HCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVACR 202

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            + SA  +F+    +D   WN ++SG    GD   + ELFDRM         T    VL+
Sbjct: 203 DMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNT----VLS 258

Query: 273 TCTHAKMVRDGLNLFENMSA--VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM--- 327
                  V   + LFE M    VY     +  Y        R G+ +EA +  +  +   
Sbjct: 259 GYATNGEVESFVKLFEEMPVRNVYSWNGLIGGY-------VRNGLFKEALECFKRMLVLV 311

Query: 328 --GGLGGGDANVWG------ALLSACRIYGKIEVGNRV 357
              G  G D  V        A+L+AC   G +E+G  V
Sbjct: 312 EGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWV 349



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 3/121 (2%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E   +S+L  C     + Q   + +    + LE N  +  + +   ++ G +  A  VF+
Sbjct: 22  EDKFISLLRTCGTCVRLHQ---IQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFD 78

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
             +  +   WNAM  G A        + LF RM ++G  P   TF  V+ +C  A   ++
Sbjct: 79  KTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKE 138

Query: 283 G 283
           G
Sbjct: 139 G 139


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 182/504 (36%), Positives = 275/504 (54%), Gaps = 65/504 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPLEN----------- 48
           M++ Y +++ P+ ++  Y +M   G   +NYT+P ++KAC  + G LE            
Sbjct: 81  MVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRG 140

Query: 49  FG--MFV---------------HAHVVKFGFGEDPFVV-SSLLEFYSLVHKMGTARALFD 90
           FG  +FV                A  V  GF E   V  +S+L  Y    +M  A+ +FD
Sbjct: 141 FGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFD 200

Query: 91  KSPDRDVVTWTTMVDGYGK--------------------------------MGDFENARE 118
           + P+RDVV+W+ M+DGYGK                                +G+ E ARE
Sbjct: 201 EMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVARE 260

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+KM ++N +SWS ++  Y++  D KE L+LFRQM   G+KP+   +V  ++AC+ LGA
Sbjct: 261 IFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGA 320

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W+H Y KR  +  ++++ TA+VDMY KCG    A  +F  +  ++  +WN MI G
Sbjct: 321 LDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVG 380

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           + MNG  K++LE F +M        +  F+ VL  C+HA +V +GL++F  M  VY +EP
Sbjct: 381 LGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEP 440

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C+VDLL RAG +++ +  I+         +A +WG+LL ACRI+  + +   V 
Sbjct: 441 KLEHYGCLVDLLGRAGQLDQIQNIIQSMP---MKPNAALWGSLLLACRIHQNVTLAEIVV 497

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            +LAE+   D   +VL  NIY + G      ++RKL+ E  MKK  G SVIEV+G VEEF
Sbjct: 498 ERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEF 557

Query: 419 LAGDNRHAQAGEIYRVIHSFLKMS 442
           ++G+  H    EI  VI S  KM+
Sbjct: 558 VSGEKSHILREEIELVIWSLAKMA 581



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 68/140 (48%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F ++ + N+   + ++  Y+  S  +  L  + +M+  G+  +      VL AC  
Sbjct: 63  AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGA 122

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           +  + +G  V   A +     +V +   ++ MY +CG    A +VF+G S KD  +WN+M
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182

Query: 236 ISGVAMNGDAKKSLELFDRM 255
           + G    G+ + +  +FD M
Sbjct: 183 LGGYVWCGEMENAQNMFDEM 202


>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/417 (38%), Positives = 249/417 (59%), Gaps = 3/417 (0%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P+ YT P ++KA   +  + + G  +HA  +K G   + FV +SLL  Y     M +
Sbjct: 100 GIHPDTYTLPYVLKASARMTNI-HLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRS 158

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR +FD+ P+   V+WT M+ GY  MGD + ARELF+    ++   W A+++ Y + + F
Sbjct: 159 ARQVFDEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCF 218

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           KE L +FR MQ   ++P+E+ +V++L+ACAH+GA+  G+W+H Y  R  L   + ++T +
Sbjct: 219 KEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGL 278

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KCGH+  A  +F  +S +D   WNAMISG+AM+GD + +++LF  M K+G +P  
Sbjct: 279 IDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDN 338

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+AV   C+++ MV +G+ ++  MS V+ +EP+ EHY CV+DLL+R G  EEAE  I+
Sbjct: 339 ITFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQ 398

Query: 325 E-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
                     +A  W A LSAC  +G+ +       +L ++       +VL  N+Y   G
Sbjct: 399 RLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLE-RHSGAYVLLSNMYAALG 457

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
              +A +VR ++   G++K PGCS I+VNGVV EF+AG+  H     I+ V+    K
Sbjct: 458 KHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNK 514



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 129/307 (42%), Gaps = 49/307 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q N  K  +  +  M     EP+      ++ AC  +G L+  G+++H ++ + 
Sbjct: 208 MISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDT-GIWIHRYLGRL 266

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V + L++ Y+    +  A+ LF++   RD V W  M+ G    GD E A    
Sbjct: 267 GLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGA---- 322

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      + LF +M++ G+KP+    ++V  AC++ G + 
Sbjct: 323 ---------------------------IKLFMEMEKAGIKPDNITFIAVWXACSNSGMVD 355

Query: 181 QGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGI-----SNKDAGAWNA 234
           +G+ + +     H +E        V+D+ S+ G    A  V + +      +++A AW A
Sbjct: 356 EGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRA 415

Query: 235 MISGVAMNGDAKKSLELFDRMVK----SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            +S    +G  +++    +R+ +    SG     +   A L     AK VR       NM
Sbjct: 416 FLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVR-------NM 468

Query: 291 SAVYGVE 297
             + GVE
Sbjct: 469 MKLKGVE 475



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 143/338 (42%), Gaps = 21/338 (6%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY--SLVHKMGTARALFDKSP 93
           L+  C+ +  L+      HA V+K G     FV+S LL F   S    +  A  LF    
Sbjct: 11  LLHKCINMNQLKQ----AHAQVLKSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQ 66

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV-----SWSAIMAAYSRISDFKEVL 148
              +  + TM+      G+F NA  +F  +  RN +     +   ++ A +R+++     
Sbjct: 67  HPTICIFNTMIKALLLRGEFLNAIAVFSAIF-RNGIHPDTYTLPYVLKASARMTNIHLGE 125

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           S+     ++G   NE    S+L        +     V         E + +  T ++  Y
Sbjct: 126 SIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMP----ELSAVSWTVMIYGY 181

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +  G V +A  +F+  + KD G W AMISG   N   K+ L +F  M  +  +P E   V
Sbjct: 182 ANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIV 241

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            +L+ C H   +  G+ +   +  + G+   L     ++D+ A+ G ++ A+    E   
Sbjct: 242 TILSACAHMGALDTGIWIHRYLGRL-GLPLTLRVSTGLIDMYAKCGHLDLAKYLFNE--- 297

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +   D   W A++S   + G  E   +++ ++ + GI
Sbjct: 298 -MSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGI 334


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 159/431 (36%), Positives = 248/431 (57%), Gaps = 13/431 (3%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           Y  M      P+ +TFP L+ +     P+    G   HA ++ FG  +DPFV +SLL  Y
Sbjct: 49  YFRMRHHCVSPDFHTFPFLLPS--FHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY 106

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           S    + +A  +FD+S  +D+  W ++V+ Y K G   +AR+LF++MPERN +SWS ++ 
Sbjct: 107 SSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLIN 166

Query: 137 AYSRISDFKEVLSLFRQMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
            Y     +KE L LFR+MQ     EV + PN+  + +VL+AC  LGA+ QG WVHSY  +
Sbjct: 167 GYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDK 226

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLE 250
           Y +E +++L TA++DMY+KCG +  A  VF+ + S KD  A++AMI  +AM G   +  +
Sbjct: 227 YGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQ 286

Query: 251 LFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           +F  M  S    P   TFV +L  C H  ++  G + F+ M+  +G+ P ++HY C+VDL
Sbjct: 287 VFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDL 346

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
             R+G+++EAE FI          D  +WG+LLS  R+ G I+      ++L E+   + 
Sbjct: 347 YGRSGLIKEAESFIASMP---MEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNS 403

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             +VL  N+Y + G  +E  ++R  +   G+KK PGCS +EV GVV EF+ GD    ++ 
Sbjct: 404 GAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESE 463

Query: 430 EIYRVIHSFLK 440
            IY ++   ++
Sbjct: 464 RIYAMLEEIMQ 474


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 182/504 (36%), Positives = 274/504 (54%), Gaps = 65/504 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPLEN----------- 48
           M++ Y +++ P+ ++  Y +M   G   +NYT+P ++KAC  + G LE            
Sbjct: 81  MVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRG 140

Query: 49  FG--MFV---------------HAHVVKFGFGEDPFVV-SSLLEFYSLVHKMGTARALFD 90
           FG  +FV                A  V  GF E   V  +S+L  Y    +M  A+ +FD
Sbjct: 141 FGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFD 200

Query: 91  KSPDRDVVTWTTMVDGYGK--------------------------------MGDFENARE 118
           + P+RDVV+W+ M+DGYGK                                +G+ E ARE
Sbjct: 201 EMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVARE 260

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+KM ++N +SWS ++  Y+   D KE L+LFRQM   G+KP+   +V  ++AC+ LGA
Sbjct: 261 IFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGA 320

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W+H Y KR  +  ++++ TA+VDMY KCG    A  +F  +  ++  +WN MI G
Sbjct: 321 LDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVG 380

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           + MNG  K++LE F +M        +  F+ VL  C+HA +V +GL++F  M  VY +EP
Sbjct: 381 LGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEP 440

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C+VDLL RAG +++ +  I+         +A +WG+LL ACRI+  + +   V 
Sbjct: 441 KLEHYGCLVDLLGRAGQLDQIQNIIQSMP---MKPNAALWGSLLLACRIHQNVTLAEIVV 497

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            +LAE+   D   +VL  NIY + G      ++RKL+ E  MKK  G SVIEV+G VEEF
Sbjct: 498 ERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDGNVEEF 557

Query: 419 LAGDNRHAQAGEIYRVIHSFLKMS 442
           ++G+  H    EI  VI S  KM+
Sbjct: 558 VSGEKSHILREEIELVIWSLAKMA 581



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 69/140 (49%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F ++ + N+   + ++  Y+  S  +  L  + +M++ G+  +      VL AC  
Sbjct: 63  AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGA 122

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           +  + +G  V   A +     +V +   ++ MY +CG    A +VF+G S KD  +WN+M
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182

Query: 236 ISGVAMNGDAKKSLELFDRM 255
           + G    G+ + +  +FD M
Sbjct: 183 LGGYVWCGEMENAQNMFDEM 202


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  311 bits (797), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 164/412 (39%), Positives = 256/412 (62%), Gaps = 8/412 (1%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           EPN +TFP ++KAC  L  +E  G  +H  VVK G   D FV S+L+  Y +   M  A 
Sbjct: 120 EPNKFTFPCVLKACAKLARIEE-GKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAH 178

Query: 87  ALFDKSP-DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
            LF ++  + +VV W  M+DGY +MGD   +RELF+ MP ++ VSW+ +++  ++   FK
Sbjct: 179 VLFYQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFK 238

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E + +F  MQ   + PN   LVSVL A + LGAI  G WVH +A++  +E + +L +A++
Sbjct: 239 EAIEMFHDMQLGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALI 298

Query: 206 DMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           DMYSKCG +  A+ VFEGI N K+   W+A+I G+AM+G A+ +L+ F RM ++G  P++
Sbjct: 299 DMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSD 358

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             ++ VL+ C+HA +V +G +++ +M  + G+ P++EHY C+VDLL RAG +EEAE+ I 
Sbjct: 359 VVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLI- 417

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY-KEAG 383
             +      D  +  ALL AC+++G IE+G R+ + L      D  ++V   N++  E  
Sbjct: 418 --LNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGN 475

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           W+    KVR  + E  ++K PGCS IE++GV+ EFL  D+ H +A  I+ ++
Sbjct: 476 WE-GVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSML 526



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 161/353 (45%), Gaps = 37/353 (10%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV--HKMGTARALFDKS 92
           P I  C     L+     +HAH +K G    P   + LL+F +L    ++  AR  F + 
Sbjct: 20  PQISRCKTTRHLKQ----IHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQI 75

Query: 93  PDRDVVTWTTMVDGYGKMGDFE----NARE--------LFEKMPERNAVSWSAIMAAYSR 140
              +  +W T++       D +    N+ E        L + + E N  ++  ++ A ++
Sbjct: 76  HHPNCFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAK 135

Query: 141 ISDFKEVLSLFRQMQEVGMKPNE---SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           ++  +E   L   + ++G+  +E   S LV V   C   GA+      H    +  LE N
Sbjct: 136 LARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMC---GAMKDA---HVLFYQTRLEGN 189

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V+L   ++D Y + G + ++  +F+ + NK   +WN MISG A NG  K+++E+F  M  
Sbjct: 190 VVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQL 249

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
               P   T V+VL   +    +  G  ++LF   + +  ++  L   + ++D+ ++ G 
Sbjct: 250 GDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEI-EIDDVLG--SALIDMYSKCGS 306

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI-EVGNRVWRKLAEMGIT 367
           +++A +  E   G     +   W A++    ++G+  +  +  WR + + G+T
Sbjct: 307 IDKAVQVFE---GIRNKKNPITWSAIIGGLAMHGRARDALDHFWR-MQQAGVT 355


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  311 bits (797), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 262/439 (59%), Gaps = 4/439 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ ++   +LS   ++DM+         T+  ++ AC   G     GM VH  V++ 
Sbjct: 132 LISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACG-KGKDLLLGMQVHKRVLES 190

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V ++L++ Y+    M  A  LF+    R + +WT+++ G  + G  + AR+LF
Sbjct: 191 GVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLF 250

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPER+ ++W+A++  Y ++  F++ L  FR MQ   ++ +E  +VSV+TACA LGA+ 
Sbjct: 251 DHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALE 310

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W   Y  R  ++ +V +  A++DMYSKCG +  AL VF+ + N+D   W A+I G+A
Sbjct: 311 TGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLA 370

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG  ++++++F RM+++   P E TFV VLT CTHA +V  G   F +M+  Y + P +
Sbjct: 371 VNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTV 430

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C++D+L RAG ++EA   I +KM      ++ +WG LL++CR+YG  E+G     +
Sbjct: 431 VHYGCLIDVLGRAGKLKEALDTI-DKMP--MKPNSTIWGTLLASCRVYGNSEIGELAAER 487

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   + + ++L  N+Y ++    +  ++R++I E G+KK+PGCS+IE+NG++ EF+A
Sbjct: 488 LLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVA 547

Query: 421 GDNRHAQAGEIYRVIHSFL 439
            D  H    EIY  + + L
Sbjct: 548 ADRSHPMNKEIYSKLENVL 566



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 142/349 (40%), Gaps = 38/349 (10%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF----VHAHVVKFGFGEDPFVVSSLL 73
           Y+ ML  G  P+ YTFP L+KA                 +HAHVVKFG   +    SSL+
Sbjct: 39  YVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLI 98

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
             Y+       ARA+ +            +  G G                    V W+A
Sbjct: 99  VMYAARGDGAAARAVLEA---------ACLATGGGA------------------PVMWNA 131

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           +++ ++R   F+     F  M            VSVL+AC     +  G+ VH       
Sbjct: 132 LISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESG 191

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +  +  +  A+VDMY++CG + +A  +FEG+  +   +W ++ISG+  +G   ++ +LFD
Sbjct: 192 VLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFD 251

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M +  T      + A++         RD L  F  M  +  V         VV   A+ 
Sbjct: 252 HMPERDT----IAWTAMIDGYVQVGRFRDALETFRYMQ-ICKVRADEFTMVSVVTACAQL 306

Query: 314 GMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           G +E  E +    MG LG   D  V  AL+      G IE    V++ +
Sbjct: 307 GALETGE-WARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDM 354


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  310 bits (794), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 158/439 (35%), Positives = 256/439 (58%), Gaps = 5/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y   +     +  Y  +L   FE P+ +TFP + K+C  LG     G  VH H+ K
Sbjct: 79  IIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY-LGKQVHGHLCK 137

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FG        ++L++ Y     +  A  +FD+  +RDV++W +++ GY ++G  + A+ L
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGL 197

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  M ++  VSW+A+++ Y+ I  + E +  FR+MQ  G++P+E  L+SVL +CA LG++
Sbjct: 198 FHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSL 257

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H YA+R    K   +  A+++MYSKCG +  A+ +F  +  KD  +W+ MISG 
Sbjct: 258 ELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGY 317

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G+A  ++E F+ M ++  +P   TF+ +L+ C+H  M ++GL  F+ M   Y +EP+
Sbjct: 318 AYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPK 377

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C++D+LARAG +E A   +E         D+ +WG+LLS+CR  G ++V      
Sbjct: 378 IEHYGCLIDVLARAGKLERA---VEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMD 434

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L E+   D   +VL  NIY + G   + +++RK+I    MKK PG S+IEVN +V+EF+
Sbjct: 435 HLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFV 494

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           +GDN      EI  V+  F
Sbjct: 495 SGDNSKPFWTEISIVLQLF 513



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 135/306 (44%), Gaps = 46/306 (15%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T MVD   K+ D + A  LF ++   N   +++I+ AY+  S + +V+ +++Q+     +
Sbjct: 46  TKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFE 105

Query: 161 -PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
            P+      +  +CA LG+   G  VH +  ++    +V+   A++DMY K   +  A  
Sbjct: 106 LPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHK 165

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKK-------------------------------S 248
           VF+ +  +D  +WN+++SG A  G  KK                               +
Sbjct: 166 VFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEA 225

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACV 306
           ++ F  M  +G +P E + ++VL +C     +  G  ++L+       G   Q      +
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERR---GFLKQTGVCNAL 282

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC----RIYGKIEVGNRVWR-KL 361
           +++ ++ G++ +A +      G + G D   W  ++S        +G IE  N + R K+
Sbjct: 283 IEMYSKCGVISQAIQLF----GQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKV 338

Query: 362 AEMGIT 367
              GIT
Sbjct: 339 KPNGIT 344


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  310 bits (794), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 159/415 (38%), Positives = 248/415 (59%), Gaps = 10/415 (2%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+ +T   ++KAC+ L  + N G  +H    K GFG + F+ + +L  Y L  +MG A  
Sbjct: 8   PDTFTCSFVLKACLKLSDVVN-GKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAML 66

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           LF+K P RD VTW  ++    K GD + A   F +MP +N  SW+++++ + +     E 
Sbjct: 67  LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEA 126

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           + LF ++++  ++PNE  +VSVL ACA LG +  G  VH Y+ +   ++NV +   ++DM
Sbjct: 127 IDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDM 186

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y KCG + +A  VF  +  +   +W+AMI+G+AM+G A+++L LF  M+K G +P   TF
Sbjct: 187 YVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTF 246

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-- 325
           + +L  C+H  ++ +G   F +M+A YGV PQ+EHY CVVDL +RAG++EEA +FI    
Sbjct: 247 IGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMP 306

Query: 326 -KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
            K  G+      VWGALL  C+++  I++     + L+E+   +   +V+  NIY EA  
Sbjct: 307 IKPNGV------VWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAER 360

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
             +A +VRKL+ + G+KK  G S I VNGVV EF+AGD  H QA +I ++    L
Sbjct: 361 WEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLL 415



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 121/277 (43%), Gaps = 40/277 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G++Q   P  ++  ++ + D    PN  T   ++ AC  LG L+  G  VH +  K 
Sbjct: 113 MISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLD-LGRIVHEYSTKS 171

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V ++L++ Y     +  AR +F +  +R VV+W+ M+ G    G  E      
Sbjct: 172 GFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAE------ 225

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E L LF +M ++G+KPN    + +L AC+H+G I 
Sbjct: 226 -------------------------EALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLID 260

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMISG 238
           +G  +  S    Y +   +     VVD++S+ G +  A      +  K  G  W A++ G
Sbjct: 261 EGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320

Query: 239 VAMNGDAKKSLELFDRMVK--SGTQPTETTFVAVLTT 273
             ++    K+++L +  +K  S   P    +  V++ 
Sbjct: 321 CKVH----KNIDLAEEAIKHLSELDPLNDGYYVVISN 353


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 160/438 (36%), Positives = 262/438 (59%), Gaps = 9/438 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y   +   L++  +  ML      P+ +TFP +IK+C  L      G  VHAHV K
Sbjct: 76  IIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGL-LCRRLGQQVHAHVCK 134

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FG        ++L++ Y+    M  A  ++++  +RD V+W +++ G+ ++G  ++ARE+
Sbjct: 135 FGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREV 194

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP R  VSW+ ++  Y+R   + + L +FR+MQ VG++P+E  ++SVL ACA LGA+
Sbjct: 195 FDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGAL 254

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H Y+++    KN  +  A+V+MY+KCG +  A  +F  +  KD  +W+ MI G+
Sbjct: 255 EVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGL 314

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G    ++ +F+ M K+G  P   TFV VL+ C HA +  +GL  F+ M   Y +EPQ
Sbjct: 315 ANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQ 374

Query: 300 LEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +EHY C+VDLL R+G VE+A +  ++  M      D+  W +LLS+CRI+  +E+     
Sbjct: 375 IEHYGCLVDLLGRSGQVEQALDTILKMPM----QPDSRTWNSLLSSCRIHHNLEIAVVAM 430

Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            +L ++   +   +VL  NIY K   W+  +N VRKLI    +KK PGCS+IEVN +V+E
Sbjct: 431 EQLLKLEPEESGNYVLLANIYAKLDKWEGVSN-VRKLIRSKRIKKTPGCSLIEVNNLVQE 489

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F++GD+    + E++ ++
Sbjct: 490 FVSGDDSKPFSQEVFWIL 507



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/356 (24%), Positives = 154/356 (43%), Gaps = 51/356 (14%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           MG       F   ++ C  +  L+     +HAH+VK    +  F+V+ +L          
Sbjct: 1   MGVRELENRFVTTLRNCPKIAELKK----IHAHIVKLSLSQSNFLVTKML---------- 46

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
                 D   +   V + TM+               F+++   N  S++AI+  Y+    
Sbjct: 47  ------DLCDNLSHVDYATMI---------------FQQLENPNVFSYNAIIRTYTHNHK 85

Query: 144 FKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
               +++F QM       P++     V+ +CA L     G  VH++  ++  + + I   
Sbjct: 86  HPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITEN 145

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++DMY+KCG +  A  V+E ++ +DA +WN++ISG    G  K + E+FD M      P
Sbjct: 146 ALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEM------P 199

Query: 263 TET--TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
             T  ++  ++          D L +F  M  V G+EP       V+   A+ G + E  
Sbjct: 200 CRTIVSWTTMINGYARGGCYADALGIFREMQVV-GIEPDEISVISVLPACAQLGAL-EVG 257

Query: 321 KFIE---EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           K+I    EK G L   +A V+ AL+      G I+    ++ ++ E  +  +ST +
Sbjct: 258 KWIHKYSEKSGFL--KNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMI 311



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/221 (19%), Positives = 102/221 (46%), Gaps = 9/221 (4%)

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
           +G++  E+  V+ L  C  +  + +   +H++  +  L ++  L T ++D+     HV  
Sbjct: 1   MGVRELENRFVTTLRNCPKIAELKK---IHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDY 57

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCT 275
           A  +F+ + N +  ++NA+I     N     ++ +F++M+ + +  P + TF  V+ +C 
Sbjct: 58  ATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCA 117

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
                R G  +  ++   +G +        ++D+  + G +  A +  EE    +   DA
Sbjct: 118 GLLCRRLGQQVHAHVCK-FGPKTHAITENALIDMYTKCGDMSGAYQVYEE----MTERDA 172

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             W +L+S     G+++    V+ ++    I  ++T +  Y
Sbjct: 173 VSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGY 213


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  310 bits (793), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/472 (36%), Positives = 269/472 (56%), Gaps = 42/472 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGF-EPNNYTFPPLIKACVIL-GPLENFGMFVHAHV 57
           MI+ Y     P+ +   Y  ML D  +  PN++TF  +  AC    G  E  G   HA +
Sbjct: 104 MIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFE--GKQAHAQM 161

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGT--------------------------------A 85
           +KF F       +SLL+FY  V ++G                                 A
Sbjct: 162 IKFPFEFGVHSWNSLLDFYGKVGEVGIVVRRVFDKIEGPDVVSWNCLINGYVKSGDLDEA 221

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P+RDVV+WT M+ GY   G    A  LF++MP+RN VSWSA++  Y +I  + 
Sbjct: 222 RRLFDEMPERDVVSWTIMLVGYADAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYS 281

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + L LF++MQ   +K +E  + ++L+ACA LGA+ QG W+H Y  ++ ++ +  L+TA++
Sbjct: 282 KALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALI 341

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMYSKCG +  A  VF+   +K    W++MI G+AM+   +K++ELF +M++ G +P+E 
Sbjct: 342 DMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEI 401

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T++ +L  CTH+ +V  GL +F  M      +P+++HY C+VDLL RAG++ +A + +E 
Sbjct: 402 TYINILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVET 461

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-W 384
                   D  +W ALLSAC+++  +E+G +V R L +M   +   +VL  N+Y     W
Sbjct: 462 MP---VKADPAIWRALLSACKLHRNVELGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRW 518

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           D+ + K+R+ +   GM+K PGCS IE+NG V EF++ D+ H Q+  IY ++H
Sbjct: 519 DI-SGKLRREMKVRGMQKNPGCSSIELNGAVHEFVSRDHSHPQSQVIYELLH 569


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 258/440 (58%), Gaps = 44/440 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+   + ++  + +M      PN  T   ++ AC   G LE  G +V + +   
Sbjct: 235 MIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE-LGNWVRSWIEDH 293

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G +  +V++L++ YS                               K GD + AR+LF
Sbjct: 294 GLGSNLRLVNALIDMYS-------------------------------KCGDLDKARDLF 322

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E + E++ +SW+ ++  YS ++ +KE L+LFR+MQ+  ++PN+   VS+L ACA+LGA+ 
Sbjct: 323 EGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALD 382

Query: 181 QGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            G W+H+Y  K++    N  L T+++DMY+KCG++ +A  VF G+  K  G+WNAMISG+
Sbjct: 383 LGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G A  +LELF +M   G +P + TFV VL+ C+HA +V  G   F +M   Y + P+
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK 502

Query: 300 LEHYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           L+HY C++DLL RAG+ +EAE   K +E K       D  +WG+LL ACR++G +E+G  
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMK------PDGAIWGSLLGACRVHGNVELGEF 556

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
             + L E+   +   +VL  NIY  AG WD +  ++R  +++ GMKK PGCS IEV+ VV
Sbjct: 557 AAKHLFELEPENPGAYVLLSNIYATAGRWD-DVARIRTKLNDKGMKKVPGCSSIEVDSVV 615

Query: 416 EEFLAGDNRHAQAGEIYRVI 435
            EFL GD  H Q+ +IY+++
Sbjct: 616 HEFLVGDKVHEQSQDIYKML 635



 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 212/365 (58%), Gaps = 5/365 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG   ++ P  ++  Y+ ML  G EPN+YTFP L+K+C  +G  +  G  +H HV+K 
Sbjct: 103 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE-GKQIHGHVLKL 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DPFV +SL+  Y+   ++G A  +F KS  RD V++T ++ GY   G  ++AR LF
Sbjct: 162 GLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLF 221

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++P R+AVSW+A++A Y++   F+E L+ F++M+   + PNES +V+VL+ACA  G++ 
Sbjct: 222 EEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE 281

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WV S+ + + L  N+ L  A++DMYSKCG +  A  +FEGI  KD  +WN MI G +
Sbjct: 282 LGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
                K++L LF +M +S  +P + TFV++L  C +   +  G  +   +   +      
Sbjct: 342 HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT 401

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
             +  ++D+ A+ G +E A++       G+       W A++S   ++G   +   ++R+
Sbjct: 402 SLWTSLIDMYAKCGNIEAAKQVF----AGMKPKSLGSWNAMISGLAMHGHANMALELFRQ 457

Query: 361 LAEMG 365
           + + G
Sbjct: 458 MRDEG 462



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 142/345 (41%), Gaps = 65/345 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H+ ++K G     F +S L+EF ++             SP                 G+
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAI-------------SP----------------FGN 81

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  LFE + + N   W+ ++   S  S     +  + +M   G++PN      +L +
Sbjct: 82  LSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH------------------- 213
           CA +GA  +G  +H +  +  LE +  + T++++MY++ G                    
Sbjct: 142 CAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSF 201

Query: 214 ------------VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                       +  A  +FE I  +DA +WNAMI+G A +G  +++L  F  M ++   
Sbjct: 202 TALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVA 261

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E+T V VL+ C  +  +  G N   +    +G+   L     ++D+ ++ G +++A  
Sbjct: 262 PNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             E    G+   D   W  ++         +    ++RK+ +  +
Sbjct: 321 LFE----GICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV 361



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 90/197 (45%), Gaps = 10/197 (5%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM--YSKCGHVHSALSVFEGI 224
           +++L+ C     + Q   +HS   +  L       + +++    S  G++  AL +FE I
Sbjct: 36  LTLLSTCKSFQNLKQ---IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
              +   WN MI G +++     +++ + RM+  G +P   TF  +L +C      ++G 
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +  ++  + G+E     +  ++++ A+ G +  AE    +        DA  + AL++ 
Sbjct: 153 QIHGHVLKL-GLESDPFVHTSLINMYAQNGELGYAELVFSKS----SLRDAVSFTALITG 207

Query: 345 CRIYGKIEVGNRVWRKL 361
             + G ++   R++ ++
Sbjct: 208 YTLRGCLDDARRLFEEI 224


>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Vitis vinifera]
          Length = 573

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 162/426 (38%), Positives = 250/426 (58%), Gaps = 18/426 (4%)

Query: 28  PNNYTFPPLIKACV-ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY-SLVHKMGTA 85
           PN++ +P ++K+C  ++GP       VH  V++ GF + P V ++LL+ Y      + +A
Sbjct: 153 PNHFIYPHVLKSCTQVVGP--GSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESA 210

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+  +R+VV+WT M+ GY ++G   NA  LFE+MPER+  SW+A++A Y++   F 
Sbjct: 211 RLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFM 270

Query: 146 EVLSLFRQMQEV-------GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV 198
           E LSLFR+M  V       G +PN+   V  L+AC H G +  G W+H Y  R  L  + 
Sbjct: 271 EALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGLGLDS 330

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK- 257
            ++ A+VDMY KCG +  A  VF+    +   +WN+MI+ +A++G ++ ++ +F+ M+  
Sbjct: 331 FVSNALVDMYGKCGCLKEARRVFDRTLERSLTSWNSMINCLALHGQSQNAISVFEEMMTC 390

Query: 258 -SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
            SG +P E TF+ +L  CTH  +V  G   FE M+  YG+EPQ+EHY C+VDLL RAG  
Sbjct: 391 GSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRAGQF 450

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           EEA + +    G     D  +WG+LL+ C+I+G  ++     +KL +M   +    ++  
Sbjct: 451 EEAMEVVR---GMRIEPDEVIWGSLLNGCKIHGHTDLAEFSIKKLIDMDPNNGGYGIMLA 507

Query: 377 NIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           NIY E G WD E  KVRK++ E    K PGCS IE++  V +F + D  H +  EIY  +
Sbjct: 508 NIYGELGKWD-EVRKVRKVLKEQNAHKTPGCSWIEIDNQVHQFYSVDKTHPRTEEIYNTL 566

Query: 436 HSFLKM 441
            S + +
Sbjct: 567 ESLISL 572



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 49/298 (16%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVS 168
           + +   AR +F+ +   N   ++A++ AY+  SD    L L+R M +     PN      
Sbjct: 101 LSNLSYARFIFDHVESPNVYLYTAMITAYASHSDHTSALLLYRNMVRRRRPWPNHFIYPH 160

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHL--------------------------------EK 196
           VL +C  +        VH    R                                   E+
Sbjct: 161 VLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESARLLFDEMTER 220

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           NV+  TA++  Y++ G + +A+ +FE +  +D  +WNA+I+G   NG   ++L LF RM+
Sbjct: 221 NVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFMEALSLFRRMI 280

Query: 257 K-------SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA--CVV 307
                    G +P + T V  L+ C H  M+R G  +      VY     L+ +    +V
Sbjct: 281 AVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIH---GYVYRNGLGLDSFVSNALV 337

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           D+  + G ++EA +  +  +          W ++++   ++G+ +    V+ ++   G
Sbjct: 338 DMYGKCGCLKEARRVFDRTL----ERSLTSWNSMINCLALHGQSQNAISVFEEMMTCG 391


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 255/443 (57%), Gaps = 16/443 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ Y++  F    +  + +++   + P+N+T P +IK C  LG ++  G  +H   +K 
Sbjct: 87  IIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQE-GKQIHGLALKI 144

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDG-----------YGK 109
           GFG D FV  SL+  YS   ++  AR +FD   D+DVV W +++DG           Y K
Sbjct: 145 GFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMK 204

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
            GDF++A ELF +MP  + V+W+ ++A Y     F + + +F  M ++G +P+ + LVSV
Sbjct: 205 SGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSV 264

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L+A + L  + +G W+HSY ++   E + IL T++++MY+KCG + SAL+VF  I  K  
Sbjct: 265 LSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKV 324

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
           G W A+I G+ ++G A  +L LF  M K+G +P    F+ VL  C HA +V DG   F+ 
Sbjct: 325 GHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDM 384

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   Y +EP LEHY C+VD+L RAG +EEA+  IE         +  +W +LL   R +G
Sbjct: 385 MMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMP---ISPNKVIWMSLLGGSRNHG 441

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
           KI++G    +++ E+       ++L  N+Y  +G   + + VR+++ + G +K PGCS +
Sbjct: 442 KIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSV 501

Query: 410 EVNGVVEEFLAGDNRHAQAGEIY 432
           E  G + EF+ GD  H Q  EIY
Sbjct: 502 EHKGTLHEFIVGDISHPQTKEIY 524



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 131/322 (40%), Gaps = 99/322 (30%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYS--LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HA  +K      PFV S LL  YS   ++ +G AR++FD+   R ++ W T++  Y + 
Sbjct: 35  LHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIKCYVE- 93

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
                           N  S   I+  +  + ++                P+   L  V+
Sbjct: 94  ----------------NQFSHDGIVLFHELVHEY---------------LPDNFTLPCVI 122

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA- 229
             CA LG + +G  +H  A +     +V +  ++V+MYSKCG +  A  VF+G+ +KD  
Sbjct: 123 KGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVV 182

Query: 230 ----------GAWNAMISGVAMNGDAKKSLELFDR------------------------- 254
                      +WNAMI+G   +GD   +LELF +                         
Sbjct: 183 LWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDA 242

Query: 255 ------MVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVE 297
                 M+K G++P+  T V+VL+  +           H+ M ++G  L      + G  
Sbjct: 243 VKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFEL----DGILGTS 298

Query: 298 PQLEHYACVVDLLARAGMVEEA 319
                   ++++ A+ G +E A
Sbjct: 299 --------LIEMYAKCGCIESA 312


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  309 bits (791), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 171/437 (39%), Positives = 250/437 (57%), Gaps = 46/437 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+  ++ N P  ++  Y +M+   F PN YT+P ++KAC   G +   G+ VHAH+VK 
Sbjct: 129 MIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAE-GVQVHAHLVKH 187

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD-KSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G G D  ++SS +  Y+   ++  AR + D K  + D V                     
Sbjct: 188 GLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVC-------------------- 227

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
              MP+R                 F E L +F QMQ+  ++P +  L SVL+ACA+LGA+
Sbjct: 228 ---MPDRKGC--------------FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGAL 270

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H+YAKR  ++ + +L T++VDMY+KCG +  A  VFE +SNK+  +WNAMI G+
Sbjct: 271 DQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGL 330

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G A+ +++LF +M      P E TFV VL  C H  +V+ GL +F +M   YGVEPQ
Sbjct: 331 AMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQ 387

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL RAG++ EAEK +             VWGALL ACR +G +E+G RV +
Sbjct: 388 IEHYGCIVDLLGRAGLLTEAEKVVSSIP---TEPTPAVWGALLGACRKHGNVELGERVGK 444

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV-NGVVEEF 418
            L E+   +   + L  NIY +AG   E  +VRKL+ E G+K  PG S+I++  G V +F
Sbjct: 445 ILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKF 504

Query: 419 LAGDNRHAQAGEIYRVI 435
           + GD  H Q  +IY+++
Sbjct: 505 IIGDGSHPQVKDIYQML 521



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 134/304 (44%), Gaps = 46/304 (15%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA +++ G  +D ++  SL++ Y+ V    T R L                        F
Sbjct: 75  HALILRTGHLQDSYIAGSLVKSYANV---STNRYL-----------------------SF 108

Query: 114 ENARELFEKMPERNAVSWSA-IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           E++  +F+ + + N   W+  I         FK +L L+ +M     +PN+    +VL A
Sbjct: 109 ESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAIL-LYYEMMVAHFRPNKYTYPAVLKA 167

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+  G + +G+ VH++  ++ L  +  + ++ + MY+  G +  A  + +     D G  
Sbjct: 168 CSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILD-----DKGGE 222

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENM 290
              +      G   ++LE+F +M K   +P +    +VL+ C +   +  G  ++ +   
Sbjct: 223 VDAVCMPDRKGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKR 282

Query: 291 SAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
           +++     QL+      +VD+ A+ G ++ A +  E+    +   + + W A++    ++
Sbjct: 283 NSI-----QLDGVLGTSLVDMYAKCGRIDLAWEVFEK----MSNKEVSSWNAMIGGLAMH 333

Query: 349 GKIE 352
           G+ E
Sbjct: 334 GRAE 337


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 253/414 (61%), Gaps = 3/414 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY++    + +V  Y  M ++   +PN  T    + AC +L  LE  G  +H ++  
Sbjct: 180 MISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLE-LGKEIHDYIAN 238

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                 P + ++LL+ Y     +  AR +FD    ++V  WT+MV GY   G  + AR L
Sbjct: 239 -ELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYL 297

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+ P R+ V W+A++  Y + + F++ ++LF +MQ  G++P++  +V++LT CA LGA+
Sbjct: 298 FERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGAL 357

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H+Y     ++ + +++TA+++MY+KCG +  +L +F G+ + D  +W ++I G+
Sbjct: 358 EQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGL 417

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG   ++LELF+ M   G +P + TFVAVL+ C HA +V +G  LF +MS++Y +EP 
Sbjct: 418 AMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPN 477

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C +DLL RAG+++EAE+ +++           ++GALLSACR YG I++G R+  
Sbjct: 478 LEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLAT 537

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
            LA++  +D S H L  +IY  A    +  KVR  + + G+KK PG S IEV+G
Sbjct: 538 ALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG 591



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 176/377 (46%), Gaps = 49/377 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+ +++    + ++  +  + + G  P+NYT+P ++K    +G +   G  +HA VVK 
Sbjct: 79  MIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVRE-GEKIHAFVVKT 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DP+V +SL++ Y+ +  +     +F++ P+RD V+W  M+ GY +   FE      
Sbjct: 138 GLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFE------ 191

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
                                    E + ++R+MQ E   KPNE+ +VS L+ACA L  +
Sbjct: 192 -------------------------EAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNL 226

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H Y     L+   I+  A++DMY KCG V  A  +F+ +  K+   W +M++G 
Sbjct: 227 ELGKEIHDYIAN-ELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGY 285

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETT--FVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
            + G   ++  LF+R       P+     + A++          D + LF  M  + GVE
Sbjct: 286 VICGQLDQARYLFER------SPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQ-IRGVE 338

Query: 298 PQLEHYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           P       ++   A+ G +E+ +    +I+E    +   DA V  AL+      G IE  
Sbjct: 339 PDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKM---DAVVSTALIEMYAKCGCIEKS 395

Query: 355 NRVWRKLAEMGITDFST 371
             ++  L +M  T +++
Sbjct: 396 LEIFNGLKDMDTTSWTS 412



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/330 (20%), Positives = 154/330 (46%), Gaps = 40/330 (12%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T+  L+K+C  +  L+     + AH+  FG  +D  +++ L+ F              D 
Sbjct: 10  TYISLLKSCKSMSQLKQ----IQAHIFCFGLQQDRDILNKLMAFS------------MDS 53

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           S                 +GDF  A  +F  +   +   ++ ++ A+ +    +  +SLF
Sbjct: 54  S-----------------LGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLF 96

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           +Q++E G+ P+      VL     +G + +G  +H++  +  LE +  +  +++DMY++ 
Sbjct: 97  QQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAEL 156

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAV 270
           G V     VFE +  +DA +WN MISG       +++++++ RM ++S  +P E T V+ 
Sbjct: 157 GLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVST 216

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330
           L+ C   + +  G  + + ++    + P + +   ++D+  + G V  A +  +     +
Sbjct: 217 LSACAVLRNLELGKEIHDYIANELDLTPIMGN--ALLDMYCKCGCVSVAREIFD----AM 270

Query: 331 GGGDANVWGALLSACRIYGKIEVGNRVWRK 360
              + N W ++++   I G+++    ++ +
Sbjct: 271 IVKNVNCWTSMVTGYVICGQLDQARYLFER 300


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/431 (37%), Positives = 246/431 (57%), Gaps = 24/431 (5%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           YL M +    P+ +TFP L+ +     PL    G   HA ++ FG  +DPFV +SLL  Y
Sbjct: 50  YLRMRNHRVSPDFHTFPFLLPS--FHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY 107

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           S    + +A+ +FD S  +D+  W ++V+ Y K G  ++AR+LF++MPERN +SWS ++ 
Sbjct: 108 SSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLIN 167

Query: 137 AYSRISDFKEVLSLFRQMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
            Y     +KE L LFR+MQ     E  ++PNE  + +VL+AC  LGA+ QG WVH+Y  +
Sbjct: 168 GYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDK 227

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLE 250
           YH+E +++L TA++DMY+KCG +  A  VF  + S KD  A++AMI  +AM G   +  +
Sbjct: 228 YHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQ 287

Query: 251 LFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           LF  M  S    P   TFV +L  C H  ++ +G + F+ M   +G+ P ++HY C+VDL
Sbjct: 288 LFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDL 347

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
             R+G+++EAE FI          D  +WG+LLS  R+ G I+      ++L E+   + 
Sbjct: 348 YGRSGLIKEAESFIASMP---MEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNS 404

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             +VL  N+Y + G  ME           G+ K PGCS +EV GVV EF+ GD    ++ 
Sbjct: 405 GAYVLLSNVYAKTGRWME-----------GINKVPGCSYVEVEGVVHEFVVGDESQQESE 453

Query: 430 EIYRVIHSFLK 440
            IY ++   ++
Sbjct: 454 RIYAMLDEIMQ 464


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/433 (37%), Positives = 251/433 (57%), Gaps = 34/433 (7%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           IRG++ +  P+ +V  Y  +L   G +P+NYT+P L KAC  L  L   G  +  HV+  
Sbjct: 122 IRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLS-LIRMGSEILGHVLHL 180

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTW-------------------- 100
           GF  D FV ++++        +  AR +FDKS  RD+V+W                    
Sbjct: 181 GFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLESARKLFDS 240

Query: 101 ---------TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
                    TTMV GY + G  + A +LF++MP+++ V W+A++  Y   +  KE L+LF
Sbjct: 241 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 300

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +MQ + + P+E  +VS L+AC+ LGA+  G+W+H Y +++ L  NV L TA++DMY+KC
Sbjct: 301 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 360

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G +  A+ VF+ +  +++  W A+ISG+A++G+A  ++  F  M+ +   P E TF+ +L
Sbjct: 361 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 420

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           + C H  +V +G   F  MS+ + + P+L+HY+C+VDLL RAG++EEAE+ I+       
Sbjct: 421 SACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP---I 477

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391
             DA VWGAL  ACRI+G + +G R   KL +M   D   +VL  N+Y EA    EA K 
Sbjct: 478 EADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKA 537

Query: 392 RKLISETGMKKKP 404
           RKL+ + G++K P
Sbjct: 538 RKLMRQRGVEKTP 550



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 109/246 (44%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+ AN  K ++  + +M  M   P+  T    + AC  LG L+  G+++H ++ K 
Sbjct: 283 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALD-VGIWIHHYIEKH 341

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  + ++L++ Y+   K+  A  +F + P R+ +TWT ++ G    G+   A    
Sbjct: 342 ELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA---- 397

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      ++ F +M +  + P+E   + +L+AC H G + 
Sbjct: 398 ---------------------------IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVE 430

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +    + +++L   +   + +VD+  + G +  A  + + +    DA  W A+   
Sbjct: 431 EGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFA 490

Query: 239 VAMNGD 244
             ++G+
Sbjct: 491 CRIHGN 496


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 167/412 (40%), Positives = 246/412 (59%), Gaps = 6/412 (1%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D G+ PN Y+F     AC   G     G  V  H VK G   + FVV++L+  +    ++
Sbjct: 271 DSGYFPNRYSFVFAFGACGN-GMCVREGEQVFTHAVKVGLDGNVFVVNALIGMFGKWGRV 329

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             AR +FD + DRD  +W TM+  Y   G+   A+ELF++M ER+ VSWS I+A Y ++ 
Sbjct: 330 EDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVG 389

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            F E L  F +M +  +KPNE  +VS L AC++L A+ QG W+H Y +R +++ N  L  
Sbjct: 390 CFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLA 449

Query: 203 AVVDMYSKCGHVHSALSVF-EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
           +++DMY+KCG + SA SVF E    +    WNAMI G AM+G  ++++ +F++M      
Sbjct: 450 SLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVFEKMKVEKVS 509

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P + TF+A+L  C+H  MV++G + FE M++ YG+ P++EHY C+VDLL+R+G ++++E+
Sbjct: 510 PNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEE 569

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            I   +      D  +WGALL+ACRIY  +E G R+ R + E+       +VL  NIY  
Sbjct: 570 MI---LSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDPNHIGCNVLLGNIYST 626

Query: 382 AGWDMEANKVR-KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           +G   EA  VR K    +  KK PG S IE+NGV  EFL GD  H Q+ EIY
Sbjct: 627 SGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSHPQSREIY 678



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/376 (20%), Positives = 142/376 (37%), Gaps = 93/376 (24%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           N+     LI  C  +  ++      HA+++       P + +  L+  +L   +  A  L
Sbjct: 178 NHSKLSSLIDLCKSINQIKQ----THANLITTAQITLPVIANKFLKNVALA-SLTYAHKL 232

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           FD+ P  D+  + TM+  +                           M+ +S +       
Sbjct: 233 FDQIPQPDLFIYNTMIKSHS--------------------------MSPHSYLDSIAVFR 266

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           SL R   + G  PN    V    AC +   + +G  V ++A +  L+ NV +  A++ M+
Sbjct: 267 SLIR---DSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDGNVFVVNALIGMF 323

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD--------------- 253
            K G V  A +VF+   ++D  +WN MI     +G+   + ELFD               
Sbjct: 324 GKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIA 383

Query: 254 ----------------RMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNL 286
                           +M++S  +P E T V+ L  C+           H  + RD + +
Sbjct: 384 GYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKM 443

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSAC 345
            + +             A ++D+ A+ G ++ A   F E K+          W A++   
Sbjct: 444 NDRL------------LASLIDMYAKCGEIDSASSVFHEHKV----KRKVWPWNAMIGGF 487

Query: 346 RIYGKIEVGNRVWRKL 361
            ++GK E    V+ K+
Sbjct: 488 AMHGKPEEAINVFEKM 503



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 113/260 (43%), Gaps = 36/260 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q      ++  +  ML    +PN YT    + AC  L  L+  G ++H ++ + 
Sbjct: 381 IIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQ-GKWIHVYIRRD 439

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALF-DKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
               +  +++SL++ Y+   ++ +A ++F +    R V  W  M+ G+   G  E A  +
Sbjct: 440 NIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINV 499

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FEKM                             ++++V   PN+   +++L AC+H   +
Sbjct: 500 FEKM-----------------------------KVEKVS--PNKVTFIALLNACSHGYMV 528

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G  +    A  Y +   +     +VD+ S+ GH+  +  +   +    D   W A+++
Sbjct: 529 KEGKSYFELMASDYGINPEIEHYGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLN 588

Query: 238 GVAMNGDAKKSLELFDRMVK 257
              +  D ++   +  R++K
Sbjct: 589 ACRIYKDMERGYRI-GRIIK 607


>gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61800 [Vitis vinifera]
          Length = 576

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 151/424 (35%), Positives = 249/424 (58%), Gaps = 6/424 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR +   + P  ++  ++ M  +   P+ +TFP  +KAC +L P  +    +H+   KF
Sbjct: 100 MIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSLL-PALSLAQTLHSQAFKF 158

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D FV ++L+  YS+   +  A  +F+++  +DVV++  ++ G+ K+GD + AR LF
Sbjct: 159 GFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLF 218

Query: 121 EKMPERNAVSWSAIMAAYSRISDF-KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           +KMP R+AVSW  ++A Y++  D   + + LF +M    ++P+   LVS L+ACA LG +
Sbjct: 219 DKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGEL 278

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG  +H Y K+  +  N  L+T +VD+Y+KCG + +A  +FE   +K+   WNA++ G+
Sbjct: 279 EQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFESSPDKNLFTWNALLVGL 338

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            M+G    SL  F RM+++G +P   +F+ +L  C HA +V +  N F+ M  VY V  +
Sbjct: 339 GMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVCEARNFFQEMEVVYRVPRE 398

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           L+HY C+ DLL RAG++ EA + IE       GGD  VWG +L  CRI+G +E+  +   
Sbjct: 399 LKHYGCMADLLGRAGLIREAMEMIERMP---MGGDVFVWGGVLGGCRIHGNVEIAEKAAE 455

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV-NGVVEEF 418
            +  +   D   + +  +IY  AG   +  ++R+L+    +KK PGCS++++ NGV   F
Sbjct: 456 NVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKNPGCSLVQLNNGVFHGF 515

Query: 419 LAGD 422
           +AG 
Sbjct: 516 VAGS 519



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 153/373 (41%), Gaps = 76/373 (20%)

Query: 36  LIKACVILGPLENFGMFVHAHVVK----FGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           +I+ C  L  L      VHAH +     +G      +++++L  ++ +     A      
Sbjct: 21  VIRQCKSLKQLHQ----VHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNA------ 70

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           SP     T    + GY        A  +F ++P  +   ++ ++ A++ +S     L +F
Sbjct: 71  SP-----TTPAALTGY--------ALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIF 117

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +M+ + + P+       L AC+ L A++    +HS A ++    ++ +   ++ +YS  
Sbjct: 118 VRMRRLSVPPDTHTFPFCLKACSLLPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVN 177

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK------------------------ 247
            H+H A  VF   S KD  ++NA+I G    GD  +                        
Sbjct: 178 KHLHHACQVFNETSLKDVVSYNALIGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYA 237

Query: 248 --------SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
                   +++LF+RM+ S  +P     V+ L+ C     +  G ++      VY  + +
Sbjct: 238 QSGDLCMDAIQLFNRMLISTVRPDNIALVSALSACAQLGELEQGKSIH-----VYIKQNR 292

Query: 300 LEHYAC----VVDLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEV 353
           +   A     +VDL A+ G +E A +  E         D N+  W ALL    ++G+  +
Sbjct: 293 IPINAFLSTGLVDLYAKCGCIETAREIFESS------PDKNLFTWNALLVGLGMHGRGHL 346

Query: 354 GNRVWRKLAEMGI 366
               + ++ E GI
Sbjct: 347 SLHYFSRMIEAGI 359


>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 166/439 (37%), Positives = 255/439 (58%), Gaps = 9/439 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +     P  S+  ++ ML  G  P+  T+P L+KA   L   E  GM VH H+VK 
Sbjct: 84  LIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQE-LGMAVHVHIVKS 142

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ +SL+  Y+    + +AR +FD+ P +++VTW  M+DGY K GD   ARE+F
Sbjct: 143 GHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVF 202

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPE++ VSWS+++  Y +   + E ++LF +M   G   NE  LVS L ACAHLGA+ 
Sbjct: 203 NLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALE 262

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA--WNAMISG 238
            G  +H Y     L   ++L T++VDMY+KCG +H AL+VF   S ++A    WNA+I G
Sbjct: 263 HGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGG 322

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G  K+++ LF  M   G  P E T++ +L+ C H  +V +    F+ +   +G+ P
Sbjct: 323 LATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRK-HGMIP 381

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           ++EHYAC+VD L+RAG V EA +F+ +         +++ GALLS C  +GK+++   V 
Sbjct: 382 KVEHYACMVDALSRAGQVSEAYQFLCQMP---VQPTSSMLGALLSGCMKHGKLDIAKVVG 438

Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           R+L E+       +V   NIY  +  WD +A  +R+ +   G+KK PG S IEV GV+  
Sbjct: 439 RRLVELDPNHDGRYVGLSNIYAADKRWD-DAKNIREAMERKGVKKSPGFSFIEVYGVLHR 497

Query: 418 FLAGDNRHAQAGEIYRVIH 436
           F+A D  H    +I+ +++
Sbjct: 498 FMAHDKTHGDCEQIFMMLN 516



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/373 (21%), Positives = 145/373 (38%), Gaps = 75/373 (20%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
           N T   L+  C  +  L+     +HA +   G  +D  + S LL F +L           
Sbjct: 13  NQTLISLLDGCKSMFELKR----IHALLFTLGISQDETIKSKLLLFSAL----------- 57

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
             SP RD+                + + +L   +P     +W+ ++ A+S   +    ++
Sbjct: 58  --SPARDL----------------DYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSIT 99

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F +M + G+ P+      ++ A + L     G+ VH +  +   E +  +  +++ MY+
Sbjct: 100 VFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYA 159

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK----------------------- 246
            C  + SA  VF+ +  K+   WNAM+ G A  GD                         
Sbjct: 160 SCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDG 219

Query: 247 --------KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
                   +++ LF+RM   G    E T V+ L  C H   +  G      M   Y VE 
Sbjct: 220 YVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHG-----RMMHRYIVEN 274

Query: 299 QLE----HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           +L         +VD+ A+ G + EA      +   L   D  +W A++     +G I+  
Sbjct: 275 ELPLTIVLQTSLVDMYAKCGAIHEALTVF--RACSLQEADVLIWNAIIGGLATHGLIKEA 332

Query: 355 NRVWRKLAEMGIT 367
             ++ ++  +GI 
Sbjct: 333 MNLFCEMKMVGIV 345


>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
 gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
          Length = 537

 Score =  308 bits (788), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 265/441 (60%), Gaps = 13/441 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF----VHAH 56
           +IR +   +FP  ++  +  M  +    ++++FP  +KAC  LG     G+F    +H  
Sbjct: 95  IIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQLG-----GVFSARCLHCQ 149

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           V+KFGF  D +V++SL+  Y +      A  +FD+SP RDVV++  ++DG+ K GD   A
Sbjct: 150 VLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKA 209

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           RELF+ MP R++VSW+ I+A  ++    +E + LF  M ++ ++P+   LVS L+ACA L
Sbjct: 210 RELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVALVSTLSACAQL 269

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G + +G  +H Y +R  ++ +  L+T +VD Y+KCG V  AL +F+  S+K+   WNAM+
Sbjct: 270 GELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSSDKNLFTWNAML 329

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G+AM+G  +  LE F RM+++G +P   + + VL  C+H+ +V +   LF+ M +VYGV
Sbjct: 330 VGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEARKLFDEMESVYGV 389

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
             + +HY C+ DLL RAG++++  + I++      GGD +VW  LL  CRI+G +E+  +
Sbjct: 390 PREPKHYGCMADLLGRAGLIKKVMEMIKDMP---RGGDMSVWSGLLGGCRIHGDVEIAEK 446

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
             + L E+   D   + +  N+Y  A  W+   N  R L S   + K  G S+I+++GV 
Sbjct: 447 AAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIAGFSLIQLDGVA 506

Query: 416 EEFLAGDNRHAQAGEIYRVIH 436
            EF+AGD+ H+++ +IY V++
Sbjct: 507 HEFIAGDSLHSESDKIYLVLN 527



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/237 (19%), Positives = 94/237 (39%), Gaps = 8/237 (3%)

Query: 89  FDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           F  SP    + + T TT             A+ +F  +   +   ++ I+  ++ +S   
Sbjct: 47  FHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAKSIFNSIQNPSTFCYNTIIRVHTLLSFPI 106

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
             L  F QM+ + +  +       L ACA LG +     +H    ++    ++ +  +++
Sbjct: 107 PALHFFTQMRRLSVPLDSHSFPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLI 166

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
             Y      + A  VF+    +D  ++N +I G    GD  K+ ELFD M    +     
Sbjct: 167 HGYMVSDMSNDAYKVFDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDS----V 222

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           ++  ++  C       + + LF+ M  +  + P        +   A+ G +E+ +K 
Sbjct: 223 SWNTIIAGCAKGDYCEEAIELFDFMMDL-EIRPDNVALVSTLSACAQLGELEKGKKI 278


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  307 bits (787), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 170/436 (38%), Positives = 250/436 (57%), Gaps = 5/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q+ +P+ S+  +  M+  GF+PN   F  ++ A   +  L+  GM +H HV K 
Sbjct: 287 MIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQA-GMNIHGHVTKI 345

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF +D FV SSL++ Y    +    R LFD   ++++V+W  MV GY   G  E A+ LF
Sbjct: 346 GFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLF 405

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP RN VSWSAI+A +     F E+  +F +M  +G  PN+S   S+L ACA   ++ 
Sbjct: 406 NIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLD 465

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +H    +  ++ +  + TA+ DMY+K G + S+  VF  +  K+  +W AMI G+A
Sbjct: 466 KGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLA 525

Query: 241 MNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            +G A++SL LF+ M K S   P E  F+AVL  C+H+ +V  GL  F +M AVYG++P+
Sbjct: 526 ESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPK 585

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
             H+ CVVD+L+RAG + EAE+FI          + N W ALLS C+ Y   E+  RV  
Sbjct: 586 GRHFTCVVDMLSRAGRLFEAEEFI---YSMPFQPETNAWAALLSGCKTYKNEELAERVAG 642

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL EM   + + +VL  NIY  AG   +  KVRKL+   G+KK  GCS +E+   V  F 
Sbjct: 643 KLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDRVHSFY 702

Query: 420 AGDNRHAQAGEIYRVI 435
           + D  H+Q+ EIY ++
Sbjct: 703 SEDGAHSQSAEIYEIL 718



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 185/351 (52%), Gaps = 33/351 (9%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I GY+Q  F   ++  ++ +L+   +PN  TF  +++AC  LG     GM V   +VK G
Sbjct: 156 ISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDF-GLGMSVLGLIVKTG 214

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           +  D  V +SL+     + ++  AR +FD+  ++DVV+WT ++D Y +M +   AR +F+
Sbjct: 215 YEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFD 274

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MP+RN VSWSA++A Y +    +E L LF +M + G KPN S   S+L+A A + A+  
Sbjct: 275 EMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQA 334

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G+ +H +  +   EK+V ++++++DMY KCG       +F+ I  K+  +WNAM+ G ++
Sbjct: 335 GMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSL 394

Query: 242 NGDAKKS-------------------------------LELFDRMVKSGTQPTETTFVAV 270
           NG  +++                                E+F+ M+  G  P ++TF ++
Sbjct: 395 NGHMEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSL 454

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           L  C     +  G NL   +  + G++        + D+ A++G +E ++K
Sbjct: 455 LCACASTASLDKGKNLHGKIVKL-GIQCDTYVGTALTDMYAKSGDIESSKK 504



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 160/354 (45%), Gaps = 69/354 (19%)

Query: 33  FPPLIKACV-ILGPLENFGMF-----VHAHVVKFGFGEDPFVVSSLLEFYS--------- 77
           F    + CV +L  L N G+      +HAH+ K G   + ++   LL  Y          
Sbjct: 17  FKTYAQTCVSLLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEAD 76

Query: 78  -----------LVHK-----------MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
                      +VH            +  AR LFD+ P  + ++WT ++ G+ K G    
Sbjct: 77  QISKDFDGFDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRE 136

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           +   FE+ P +N VSW+A ++ Y +     E + LF ++ E  +KPN+    SV+ ACA+
Sbjct: 137 SMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACAN 196

Query: 176 LGAITQGLWV----------HSYAKRYHL---------------------EKNVILATAV 204
           LG    G+ V          H  A    L                     EK+V+  TA+
Sbjct: 197 LGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAI 256

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +D+Y +   +  A  +F+ +  ++  +W+AMI+    +G  ++SL LF RM++ G +P  
Sbjct: 257 LDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNI 316

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           + F ++L+     + ++ G+N+  +++ + G E  +   + ++D+  + G  ++
Sbjct: 317 SCFSSILSALASVEALQAGMNIHGHVTKI-GFEKDVFVSSSLIDMYCKCGETKD 369


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 171/438 (39%), Positives = 253/438 (57%), Gaps = 11/438 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY   +  + ++  +  ML    EPN  T   ++ AC  +G LE  G  VH  V + 
Sbjct: 329 MIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLE-MGKRVHEKVEEK 387

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  + ++LL+ Y     +  AR LFD+   +DV +WT+MV+GY K GD E+AR  F
Sbjct: 388 NMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFF 447

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++ P +NAV WSA++A YS+ +  KE L LF +M E G+ P E  LVSVL+AC  L  + 
Sbjct: 448 DQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLN 507

Query: 181 QGLWVHSY---AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            G W+H Y    K   L  +V L  A+VDMY+KCG + +A  VF  +  ++  +WN MI+
Sbjct: 508 LGDWIHQYFVVGKIIPL--SVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTMIA 565

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G A NG AK+++ +FD+M   G +P   TFV++LT C+H  ++ +G   F+NM   YG++
Sbjct: 566 GYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIK 625

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+  HYAC+VDLL R G++EEA K I      +   +A  WGALL+ACR++G +E+    
Sbjct: 626 PERGHYACMVDLLGRTGLLEEAYKLIANM--PMQPCEA-AWGALLNACRMHGNVELARLS 682

Query: 358 WRKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              L  +   D   +VL  N    +  W  +  +VR L+ + G+KK PG S+IE++G   
Sbjct: 683 AHNLLRLDPEDSGIYVLLANTCANDRKWS-DVRRVRSLMKDKGVKKIPGYSLIEIDGGFV 741

Query: 417 EFLAGDNRHAQAGEIYRV 434
           EFL  D  H Q+ EIY++
Sbjct: 742 EFLVADESHPQSEEIYKL 759



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 179/398 (44%), Gaps = 71/398 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY  A  P  +   ++ M  +  E ++ +F   +KAC     +   G  V+  V K 
Sbjct: 228 MIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFE-GESVYCVVWKM 286

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V + L+ FY+    +  AR +FD+S D+DVVTWTTM+DGY      E A E+F
Sbjct: 287 GFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAAHDCSEEAMEVF 346

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M                       +LS         ++PNE  L++V++AC+ +G + 
Sbjct: 347 ELM-----------------------LLS--------HVEPNEVTLIAVVSACSDMGNLE 375

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDM-------------------------------YS 209
            G  VH   +  ++  ++ L  A++DM                               Y+
Sbjct: 376 MGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYA 435

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG + SA   F+    K+A  W+AMI+G + N   K+SL+LF  M++ G  P E T V+
Sbjct: 436 KCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVS 495

Query: 270 VLTTCTHAKMVR--DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           VL+ C     +   D ++ +  +  +  +   LE+   +VD+ A+ G ++ A     E  
Sbjct: 496 VLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLEN--AIVDMYAKCGSIDAA----TEVF 549

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
             +   +   W  +++     G+ +    V+ ++  MG
Sbjct: 550 STMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMG 587



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/267 (19%), Positives = 117/267 (43%), Gaps = 5/267 (1%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD   A  +F ++ + N   W+ ++  Y          S F  M ++ ++ +    V  L
Sbjct: 205 GDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFAL 264

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC     + +G  V+    +   +  +++   ++  Y++ G + +A  VF+  S+KD  
Sbjct: 265 KACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVV 324

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            W  MI G A +  +++++E+F+ M+ S  +P E T +AV++ C+    +  G  + E +
Sbjct: 325 TWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKV 384

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                +   L  +  ++D+  +   + +A +  +     +   D   W ++++     G 
Sbjct: 385 EE-KNMRCSLSLHNALLDMYVKCDCLVDARELFDR----MATKDVYSWTSMVNGYAKCGD 439

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLSYN 377
           +E   R + +        +S  +  Y+
Sbjct: 440 LESARRFFDQTPRKNAVCWSAMIAGYS 466


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 167/433 (38%), Positives = 249/433 (57%), Gaps = 6/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  ++ P+L+   Y  ML      N+YTFP L++AC  L  +    + VH  V+K 
Sbjct: 59  IIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGE-ALQVHGLVIKL 117

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D F +++LL  Y+L  ++  AR LFD  P+RD V+W  M+DGY K GD + A  +F
Sbjct: 118 GFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVF 177

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP +N VSW+++++         E LSL  +MQ  G + +   + S+LTACA+LGA+ 
Sbjct: 178 LDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALD 237

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISG 238
           QG W+H Y     ++ + ++  A+V+MY KCG +  ALSVF  +  + KD   W AMI G
Sbjct: 238 QGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDG 297

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A++G   ++LE F+RM + G +P   TF AVL  C++  +V +G  LF++M   Y V P
Sbjct: 298 FAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNP 357

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C+VDLL R+G ++EA++ I +KM       A +WGALL AC I+    +G++V 
Sbjct: 358 SIEHYGCMVDLLGRSGRLDEAKELI-KKMP--MKPSAVIWGALLKACWIHRDFLLGSQVG 414

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
             L E+       ++    I    G   EA +VR  +   G+   PG S + +NG+V EF
Sbjct: 415 AHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEF 474

Query: 419 LAGDNRHAQAGEI 431
           LAG   H Q  +I
Sbjct: 475 LAGHQDHPQMEQI 487



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 2/147 (1%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL-FRQMQEVGMKPNESGLVS 168
           +GD   A+ +F  +   N   W+AI+ AYS  SD  E+  L ++QM    +  N      
Sbjct: 35  VGDLLYAQRVFNGITSPNTFMWNAIIRAYSN-SDEPELAFLSYQQMLSSSVPHNSYTFPF 93

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +L AC +L A+ + L VH    +     +V    A++ +Y+ CG +H A  +F+ I  +D
Sbjct: 94  LLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERD 153

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRM 255
           A +WN MI G   +GD K +  +F  M
Sbjct: 154 AVSWNIMIDGYIKSGDVKTAYGVFLDM 180


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 157/421 (37%), Positives = 250/421 (59%), Gaps = 6/421 (1%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M+  G +PN +T   ++KAC  +  LE  G   H +++K GF  D  V ++L+  Y+   
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQ-GKQAHNYIIKMGFESDVVVQTALVHMYARCG 59

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
            +  A  +FDK  +R   TW  M+ G+ +  D + A +LF +M ER+ VSW+A++A Y++
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
                E L++F QM++ GMK +   + SVL+ACA L A+  G   H+Y  +     ++++
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            +A+VDMY+K G +  A  VF+ +  ++  +WN++I+G A +G    ++ LF++M+++G 
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P E +FV VL+ C+H  +V +G   F  M+  YG+ P + HY C++DLL RAG ++EAE
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
            FI    G     D +VWGALL ACRI+G  E+  R+   L  M +     +VL  NIY 
Sbjct: 300 NFIN---GMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYA 356

Query: 381 EAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
            AG WD +A KVRKL+ + G+ K+PG S IEV  ++  F+AG+  H Q  EI+  + S  
Sbjct: 357 AAGQWD-DAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLS 415

Query: 440 K 440
           +
Sbjct: 416 R 416



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q  +   S+  +  M   G + + +    ++ AC  L  LE  G   HA+VV+ 
Sbjct: 113 VIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALE-LGRQFHAYVVQS 171

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  V S+L++ Y+    M  A  +FDK P R+ V+W +++ G  + G   +A  LF
Sbjct: 172 GFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLF 231

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E                               QM + G+KPNE   V VL+AC+H G + 
Sbjct: 232 E-------------------------------QMLQAGIKPNEISFVGVLSACSHTGLVN 260

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  + +   + Y +  +V   T ++D+  + G +  A +   G+    D   W A++  
Sbjct: 261 EGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGA 320

Query: 239 VAMNGDAK 246
             ++G+ +
Sbjct: 321 CRIHGNTE 328


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  306 bits (783), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 159/441 (36%), Positives = 256/441 (58%), Gaps = 8/441 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G++ +      V  Y  M+     P+NY    ++KAC +    E     +HA V+K 
Sbjct: 98  MIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCRE-----IHAQVLKL 152

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG    V   ++E Y    ++  A+ +FD+ PDRD V  T M++ Y + G  + A ELF
Sbjct: 153 GFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELF 212

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +  ++ V W+A++    R  +  + L LFR+MQ   +  NE   V VL+AC+ LGA+ 
Sbjct: 213 QDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALE 272

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHS+ +   +E +  +  A+++MYS+CG ++ A  VF  + +KD  ++N MISG+A
Sbjct: 273 LGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLA 332

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G + +++  F  MV  G +P + T VA+L  C+H  ++  GL +F +M  V+ VEPQ+
Sbjct: 333 MHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQI 392

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL R G +EEA +FIE         D  + G LLSAC+I+G +E+G ++ ++
Sbjct: 393 EHYGCIVDLLGRVGRLEEAYRFIENIP---IEPDHIMLGTLLSACKIHGNMELGEKIAKR 449

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E    D  T+VL  N+Y  +G   E+ ++R+ + ++G++K+PGCS IEV+  + EFL 
Sbjct: 450 LFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLV 509

Query: 421 GDNRHAQAGEIYRVIHSFLKM 441
           GD  H     IY+ +    ++
Sbjct: 510 GDIAHPHKEAIYQRLQELNRI 530



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 10/226 (4%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +++    +D FVV  L+   S +  +  A  +F    + +V  +T M+DG+   G 
Sbjct: 48  IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
             +   L+ +M   + +  + ++ +  +  D K    +  Q+ ++G   + S  + ++  
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEI 167

Query: 173 CAHLGAITQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
               G +         AK+   E   ++ + AT +++ YS+CG +  AL +F+ +  KD 
Sbjct: 168 YGKSGELVN-------AKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDT 220

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
             W AMI G+  N +  K+LELF  M        E T V VL+ C+
Sbjct: 221 VCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACS 266


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 168/450 (37%), Positives = 276/450 (61%), Gaps = 24/450 (5%)

Query: 1   MIRGYMQANFPK----LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           +IRG+ +++  K    +++FC + M D   EPN +TFP ++KAC   G ++  G  +H  
Sbjct: 89  IIRGFSESDEDKALIAITLFCEM-MSDEFIEPNRFTFPSVLKACAKTGKIQQ-GKQIHGL 146

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------------PDRDVVTWTT 102
            +K+GFG D FV+S+L+  Y +   M  A  LF K+               D +VV W  
Sbjct: 147 ALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNV 206

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKP 161
           M+DGY ++GD + AR LF+KM +R+ VSW+ +++ YS+   FK+ + +FR+M++   ++P
Sbjct: 207 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRP 266

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           N   LVSVL A + LG++  G W+H YA+   +  + +L +A++DMYSKCG +  A+ VF
Sbjct: 267 NYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVF 326

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           E +  ++   W+AMI+G A++G A  +++ F +M ++G +P++  ++ +LT C+HA +V 
Sbjct: 327 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVE 386

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
           +G   F  M +V G+EP++EHY C+VDLL R G+++EAE+FI   +      D  +W AL
Sbjct: 387 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFI---LNMPIKPDDVIWKAL 443

Query: 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
           L ACR++  +E+G RV   L +M   D   +V   N+Y   G   E +++R  + E  ++
Sbjct: 444 LGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIR 503

Query: 402 KKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           K PGCS I+++GV+ EFL  D+ H +A EI
Sbjct: 504 KDPGCSWIDIDGVLHEFLVEDDSHPRAKEI 533



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 23/290 (7%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV--LSLF-RQMQEVGMKPNESGLVS 168
           D + A ++F +MP+RN  SW+ I+  +S   + K +  ++LF   M +  ++PN     S
Sbjct: 67  DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPS 126

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF------- 221
           VL ACA  G I QG  +H  A +Y    +  + + +V MY  CG +  A  +F       
Sbjct: 127 VLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIER 186

Query: 222 -------EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
                      + +   WN MI G    GD K +  LFD+M     Q +  ++  +++  
Sbjct: 187 EMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKM----RQRSVVSWNTMISGY 242

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF-IEEKMGGLGGG 333
           +     +D + +F  M     + P       V+  ++R G +E  E   +  +  G+   
Sbjct: 243 SQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRID 302

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           D  +  AL+      G IE    V+ +L    +  +S  +  + I+ +AG
Sbjct: 303 DV-LGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAG 351


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 260/436 (59%), Gaps = 6/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    + +V  + +M ++G EP+ +T   L+      G  +  G FVH H+V  
Sbjct: 206 MINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFD-LGRFVHLHMVVT 264

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V ++L++ Y+    +  A+++FD+  D+DVV+WT M++ Y   G  + A E F
Sbjct: 265 GIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFF 324

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MP +N VSW++I+  + +   + E + LF +M + G+  N++ LV++L++C+H+G + 
Sbjct: 325 NQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLA 384

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   HSY    ++  +  L  A++DMY+KCG + +A+ VF G+  K+A +WN +I  +A
Sbjct: 385 LGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALA 444

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  K+++E+F++M  SG  P E TF  +L+ C+H+ +V  G + FE M+  +G+ P +
Sbjct: 445 LHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDV 504

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G++ EA   I +KM      D  VW ALL ACR YG + +G ++ ++
Sbjct: 505 EHYACMVDLLGRRGLLGEAISLI-KKMP--VKPDVVVWSALLGACRTYGNLAIGKQIMKQ 561

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+G  +   +VL  N+Y E+  WD +   + K++ + G+KK    S IE++G   +F+
Sbjct: 562 LLELGRYNSGLYVLLSNMYSESQRWD-DMKNIWKILDQNGIKKCRAISFIEIDGCCYQFM 620

Query: 420 AGDNRHAQAGEIYRVI 435
             D RH  +  IY ++
Sbjct: 621 VDDKRHGASTSIYSML 636



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 178/399 (44%), Gaps = 72/399 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+GY  ++ P  S+  Y  M+  G  PN +T P ++KAC         G+ VHA   K 
Sbjct: 105 LIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAA-KSCYWLGVCVHAQSFKL 163

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G    V +++L  Y                                  G   +AR +F
Sbjct: 164 GMGSHACVQNAILNIYV-------------------------------ACGLITSARRVF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + + ER  VSW++++  YS++   +E + +FR+MQEVG++P+   LV +L+     G   
Sbjct: 193 DDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFD 252

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G +VH +     +E + I+  A++DMY+KCG++  A SVF+ + +KD  +W  MI+  A
Sbjct: 253 LGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYA 312

Query: 241 MNGDAKKSLELFD-------------------------------RMVKSGTQPTETTFVA 269
            +G    +LE F+                               RM  SG    +TT VA
Sbjct: 313 NHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVA 372

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC--VVDLLARAGMVEEAEKFIEEKM 327
           +L++C+H   +  G    +  S ++     L    C  ++D+ A+ G ++ A     +  
Sbjct: 373 ILSSCSHMGDLALGK---QAHSYIFDNNITLSATLCNAIIDMYAKCGALQTA----MDVF 425

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            G+   +A  W  ++ A  ++G  +    ++ K+   G+
Sbjct: 426 FGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGV 464



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/359 (22%), Positives = 164/359 (45%), Gaps = 43/359 (11%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            P + T   LI  C+ L  L++    VHA ++                    +H + T  
Sbjct: 33  SPTHQTLHYLIDQCISLKQLKH----VHAQII--------------------LHGLAT-- 66

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
                     V+T   +V    ++ D   A +LF+++P+ N   ++ ++  YS  SD  +
Sbjct: 67  ---------QVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIK 117

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            L L+R+M   G+ PN+  +  VL ACA       G+ VH+ + +  +  +  +  A+++
Sbjct: 118 SLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILN 177

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           +Y  CG + SA  VF+ IS +   +WN+MI+G +  G +++++ +F  M + G +P   T
Sbjct: 178 IYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFT 237

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
            V +L+  T       G  +  +M  V G+E        ++D+ A+ G ++ A+   ++ 
Sbjct: 238 LVGLLSVSTKHGNFDLGRFVHLHM-VVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQM 296

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY---NIYKEA 382
           +      D   W  +++A   +G I+     + ++    +  +++ +  +    +Y EA
Sbjct: 297 L----DKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEA 351


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 171/447 (38%), Positives = 252/447 (56%), Gaps = 11/447 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G +  +  + S+  Y  M   G  P+++TFP L+KAC  L      G+ +H  VVK 
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLD-SKLGIKLHGLVVKA 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD-------F 113
           G   D FV +SL+  Y     +  A  +FD  P+++V  WT ++ GY  +G        F
Sbjct: 138 GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMF 197

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  +F+ M E++ VSWS+++  Y+     KE L LF +M   G +P+   +V VL AC
Sbjct: 198 RRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCAC 257

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+  G W  +   R     N +L TA++DMY+KCG + SA  VF G+  KD   WN
Sbjct: 258 ARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWN 317

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           A ISG+AM+G  K +  LF +M KSG +P   TFV +L  CTHA +V +G   F +M  V
Sbjct: 318 AAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV 377

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           + + P++EHY C+VDLL RAG ++EA + ++         +A VWGALL  CR++   ++
Sbjct: 378 FTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMP---MEANAIVWGALLGGCRLHRDTQL 434

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
              V ++L  +  ++   +VL  NIY  +    +A K+R ++SE G+KK PG S IEV+G
Sbjct: 435 VEGVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDG 494

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           VV EFL GD  H  + +IY  +   +K
Sbjct: 495 VVHEFLVGDTSHPLSEKIYAKLGELVK 521



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 134/332 (40%), Gaps = 47/332 (14%)

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
           F SL H      AL     D D      ++      G+   +  +F +  E N   ++ +
Sbjct: 20  FNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTM 79

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           +        F+E + ++  M++ G+ P+      +L ACA L     G+ +H    +   
Sbjct: 80  IHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGC 139

Query: 195 EKNVILATAVVDMYSKCGHVHSAL------------------------------------ 218
           E +  + T++V +Y KCG + +A                                     
Sbjct: 140 ESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRR 199

Query: 219 --SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
             SVF+G+  KD  +W++MI G A NG  K++L+LF +M+  G +P     V VL  C  
Sbjct: 200 ACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACAR 259

Query: 277 AKMVRDGLNLFENM--SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334
              +  G N   N+     +   P L     ++D+ A+ G ++ A     E   G+   D
Sbjct: 260 LGALELG-NWASNLMDRNEFLGNPVLG--TALIDMYAKCGRMDSA----WEVFRGMRKKD 312

Query: 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             VW A +S   + G ++    ++ ++ + GI
Sbjct: 313 IVVWNAAISGLAMSGHVKAAFGLFGQMEKSGI 344



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 81/199 (40%), Gaps = 12/199 (6%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH+   R  L+++  L   V+      G+ + +  +F      +   +N MI G+ +N  
Sbjct: 29  VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            ++S+E++  M K G  P   TF  +L  C      + G+ L   +    G E       
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKL-HGLVVKAGCESDAFVNT 147

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK---- 360
            +V L  + G ++ A K  ++    +   +   W A++S     GK      ++R+    
Sbjct: 148 SLVSLYGKCGFIDNAFKVFDD----IPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSV 203

Query: 361 ---LAEMGITDFSTHVLSY 376
              + E  I  +S+ +  Y
Sbjct: 204 FDGMLEKDIVSWSSMIQGY 222


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  305 bits (782), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 267/468 (57%), Gaps = 38/468 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+G++Q+  P  ++  Y+ ML     P +YTFP LIKAC ++  L  F   VH HV + 
Sbjct: 51  MIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLR-FAEAVHGHVWRN 109

Query: 61  GFGEDPFVVSSLLEFYS-------------------------------LVHKMGTARALF 89
           GF    FV +SL++FYS                                V  M +A  LF
Sbjct: 110 GFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLF 169

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
           D  PDR++ TW T++DGY ++ + + A  LF +MP R+ +SW+ ++  YS+   F+E L 
Sbjct: 170 DMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALG 229

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F +M + G+ P+E  + +V++ACAHLGA+  G  +H Y  ++    +V + +A++DMY+
Sbjct: 230 VFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYA 289

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  +L +F  +  K+   WN++I G+A++G A+++L +FD+M +   +P   TFV+
Sbjct: 290 KCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVS 349

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KMG 328
           VL+ C HA ++ +G   F +M+  + + P +EHY C+VDLL++AG++EEA + I   K+ 
Sbjct: 350 VLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKL- 408

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
                +A +WGALLS C+++  +E+      KL  +   +   + L  N+  E     EA
Sbjct: 409 ---EPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEA 465

Query: 389 NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            K+R  + E G++K+ PG S IE+   V +F A D  HA + EIY ++
Sbjct: 466 AKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLL 513



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/353 (19%), Positives = 134/353 (37%), Gaps = 30/353 (8%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           ++D       +         + A   + +M   N   ++A++  + +     + L L+ Q
Sbjct: 11  NQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQPVQALELYVQ 70

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M    + P      S++ AC  +  +     VH +  R   + +V + T++VD YS  G 
Sbjct: 71  MLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTSLVDFYSSMGR 130

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET-------- 265
           +  ++ VF+ +  +D  AW  M+SG+   GD   +  LFD M         T        
Sbjct: 131 IEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARL 190

Query: 266 -------------------TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
                              ++  ++   +  K  R+ L +F  M A +G+ P     A V
Sbjct: 191 REVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEM-AKHGISPDEVTMATV 249

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +   A  G ++  ++     M      D  +  AL+      G ++    ++ KL E  +
Sbjct: 250 ISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNL 309

Query: 367 TDFSTHV--LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             +++ +  L+ + Y E    M     R+ I   G+      S     G++EE
Sbjct: 310 FCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEE 362


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 158/421 (37%), Positives = 251/421 (59%), Gaps = 3/421 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY++    + +V  Y  M     E PN  T    + AC +L  LE  G  +H ++  
Sbjct: 180 MISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLE-LGKEIHDYIAS 238

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                   + ++LL+ Y     +  AR +FD    ++V  WT+MV GY   G  + AR L
Sbjct: 239 -ELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNL 297

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+ P R+ V W+A++  Y + + F+E ++LF +MQ  G+KP++  +V++LT CA  GA+
Sbjct: 298 FERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGAL 357

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H+Y     ++ + ++ TA+++MY+KCG +  +  +F G+  KD  +W ++I G+
Sbjct: 358 EQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGL 417

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AMNG   ++LELF  M   G +P + TFVAVL+ C+HA +V +G  LF +MS++Y +EP 
Sbjct: 418 AMNGKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPN 477

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C +DLL RAG+++EAE+ +++           ++GALLSACR YG I++G R+  
Sbjct: 478 LEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLAT 537

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            LA++  +D S H L  +IY  A    +  KVR  + + G+KK PG S IEV+G  ++ L
Sbjct: 538 ALAKVKSSDSSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGKWQQRL 597

Query: 420 A 420
           +
Sbjct: 598 S 598



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 190/406 (46%), Gaps = 50/406 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+ ++++   + ++  +  + + G  P+NYT+P ++K    +G +   G  VHA VVK 
Sbjct: 79  MIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVRE-GEKVHAFVVKT 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DP+V +S ++ Y+ +  +     +F++ PDRD V+W  M+ GY +   FE A +++
Sbjct: 138 GLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVY 197

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M       W+                       E   KPNE+ +VS L+ACA L  + 
Sbjct: 198 RRM-------WT-----------------------ESNEKPNEATVVSTLSACAVLRNLE 227

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y     L+   I+  A++DMY KCGHV  A  +F+ ++ K+   W +M++G  
Sbjct: 228 LGKEIHDYIAS-ELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYV 286

Query: 241 MNGDAKKSLELFDRMVKSGTQPTE--TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           + G   ++  LF+R       P+     + A++          + + LF  M  + GV+P
Sbjct: 287 ICGQLDQARNLFER------SPSRDIVLWTAMINGYVQFNRFEETIALFGEMQ-IRGVKP 339

Query: 299 QLEHYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
                  ++   A++G +E+ +    +I+E    +   DA V  AL+      G IE   
Sbjct: 340 DKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKV---DAVVGTALIEMYAKCGCIEKSF 396

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
            ++  L E   T +++ +    +    G   EA ++ K +   G+K
Sbjct: 397 EIFNGLKEKDTTSWTSIICGLAM---NGKPSEALELFKAMQTCGLK 439



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/284 (21%), Positives = 138/284 (48%), Gaps = 7/284 (2%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           DRD +           +GDF  A  +F  + + +   ++ ++ A+ +   F+  +SLF+Q
Sbjct: 39  DRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQ 98

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           ++E G+ P+      VL     +G + +G  VH++  +  LE +  +  + +DMY++ G 
Sbjct: 99  LREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGL 158

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLT 272
           V     VFE + ++DA +WN MISG       +++++++ RM  +S  +P E T V+ L+
Sbjct: 159 VEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLS 218

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
            C   + +  G  + + +++   +   + +   ++D+  + G V  A +  +     +  
Sbjct: 219 ACAVLRNLELGKEIHDYIASELDLTTIMGN--ALLDMYCKCGHVSVAREIFD----AMTV 272

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            + N W ++++   I G+++    ++ +     I  ++  +  Y
Sbjct: 273 KNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGY 316


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 252/439 (57%), Gaps = 37/439 (8%)

Query: 4   GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG 63
           GY++    +  +F Y  ML     PN +T+PPLI+AC I   +E  G  +HAHV+KFGFG
Sbjct: 68  GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEE-GKQIHAHVLKFGFG 126

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D F +++L+  Y                     V + ++          E AR +F+ M
Sbjct: 127 ADGFSLNNLIHMY---------------------VNFQSL----------EQARRVFDNM 155

Query: 124 PER--NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           P+R  N+VSW+A++AAY + +   E  +LF +M+   +  ++    S+L+AC  LGA+ Q
Sbjct: 156 PQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 215

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G W+H Y ++  +E +  LAT V+DMY KCG +  A  VF  +  K   +WN MI G+AM
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G  + ++ELF  M +    P   TFV VL+ C H+ +V +G + F+ M+ V G++P +E
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           H+ C+VDLL RAG++EEA K I E        DA V GAL+ ACRI+G  E+G ++ +K+
Sbjct: 336 HFGCMVDLLGRAGLLEEARKLINEMP---VNPDAGVLGALVGACRIHGNTELGEQIGKKV 392

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            E+   +   +VL  N+Y  AG   +  KVRKL+++ G+KK PG S+IE    V+EF+AG
Sbjct: 393 IELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAG 452

Query: 422 DNRHAQAGEIYRVIHSFLK 440
              H QA EIY  +   L+
Sbjct: 453 GRAHPQAKEIYAKLDEILE 471



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y+Q+N    +   +  M       + +    ++ AC  LG LE  G ++H ++ K 
Sbjct: 168 MIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ-GKWIHGYIEKS 226

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + +++++ Y     +  A  +F++ P + + +W  M+ G    G  E A ELF
Sbjct: 227 GIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELF 286

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M ER  V+                              P+    V+VL+ACAH G + 
Sbjct: 287 KEM-EREMVA------------------------------PDGITFVNVLSACAHSGLVE 315

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G     Y  +   L+  +     +VD+  + G +  A  +   +  N DAG   A++  
Sbjct: 316 EGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGA 375

Query: 239 VAMNGDAK 246
             ++G+ +
Sbjct: 376 CRIHGNTE 383



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 122/307 (39%), Gaps = 43/307 (14%)

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           + Y R    +  + ++ +M    + PN+     ++ AC    AI +G  +H++  ++   
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG--AWNAMISGVAMNGDAKKSLELFD 253
            +      ++ MY     +  A  VF+ +  +D    +WNAMI+    +    ++  LFD
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 254 RMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNL---------------- 286
           RM        +    ++L+ CT           H  + + G+ L                
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCG 246

Query: 287 -FENMSAVYGVEPQ--LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
             E  S V+   PQ  +  + C++  LA  G  E A +  +E    +   D   +  +LS
Sbjct: 247 CLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 306

Query: 344 ACRIYGKIEVGNRVWRKLAEM-----GITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398
           AC   G +E G   ++ + E+     G+  F   V   ++   AG   EA   RKLI+E 
Sbjct: 307 ACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMV---DLLGRAGLLEEA---RKLINEM 360

Query: 399 GMKKKPG 405
            +    G
Sbjct: 361 PVNPDAG 367


>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 540

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/449 (38%), Positives = 255/449 (56%), Gaps = 17/449 (3%)

Query: 1   MIRGYMQANFPKLSVFC-----YLDMLDMGFEPNNYTFPPLIKACV--ILGPLENFGMFV 53
           MIR Y+       + FC     Y  M      PN  TFP L+K C   + G     G  +
Sbjct: 92  MIRAYISMESGDDTHFCKALMLYKQMFCKDIVPNCLTFPFLLKGCTQWLDGAT---GQAI 148

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H  V+KFGF +D +V +SL+  Y     +  AR +FD+    DVVTW +MV G  + G  
Sbjct: 149 HTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVFDEMLVTDVVTWNSMVIGCLRNGGL 208

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG---MKPNESGLVSVL 170
           + A +LF KM  RN ++W++I+   ++    KE L LF +MQ +    +KP++  + SVL
Sbjct: 209 DMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLELFHEMQILSDDMVKPDKITIASVL 268

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
           +ACA LGAI  G WVH Y +R  +E +V++ TA+V+MY KCG V  A  +FE +  KDA 
Sbjct: 269 SACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVNMYGKCGDVQKAFEIFEEMPEKDAS 328

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AW  MIS  A++G   K+   F  M K+G +P   TFV +L+ C H+ +V  G   F+ M
Sbjct: 329 AWTVMISVFALHGLGWKAFNCFLEMEKAGVKPNHVTFVGLLSACAHSGLVEQGRWCFDVM 388

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
             VY +EPQ+ HYAC+VD+L+RA + +E+E  I          D  VWGALL  C+++G 
Sbjct: 389 KRVYSIEPQVYHYACMVDILSRARLFDESEILIRSMP---MKPDVYVWGALLGGCQMHGN 445

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK-PGCSVI 409
           +E+G +V   L ++   + + +V   +IY +AG    A ++R ++ E  ++KK PGCS+I
Sbjct: 446 VELGEKVVHHLIDLEPHNHAFYVNWCDIYAKAGMFDAAKRIRNIMKEKRIEKKIPGCSMI 505

Query: 410 EVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           E+NG V+EF AG +      E+  V++  
Sbjct: 506 EINGEVQEFSAGGSSELPMKELVLVLNGL 534


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 254/437 (58%), Gaps = 6/437 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +IRG+ +++FP++++  ++DML      +P   T+P + KA   LG L   G  +H  V+
Sbjct: 95  IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLG-LARDGRQLHGRVI 153

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G  +D F+ +++L  Y     +  A  LF      DVV W +++ G  K G  + A++
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQK 213

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF++MP+RN VSW+++++ + R   FK+ L +FR+MQE  +KP+   +VS+L ACA+LGA
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGA 273

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             QG W+H Y  R   E N I+ TA++DMY KCG     L VFE    K    WN+MI G
Sbjct: 274 SEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILG 333

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A NG  +++++LF  + ++G +P   +F+ VLT C H+  V      F  M   Y +EP
Sbjct: 334 LANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEP 393

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            ++HY C+V++L  AG+++EAE  I +KM     GD  +W +LL+ACR  G +E+  R  
Sbjct: 394 SIKHYTCMVNVLGGAGLLDEAEALI-KKMP--VEGDTIIWSSLLAACRKNGNVEMAKRAA 450

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
             L  +   +   +VL  N Y   G   EA + R L+ E  M+K+ GCS IEV+  V EF
Sbjct: 451 NCLKNLDPDETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEF 510

Query: 419 LAGDNRHAQAGEIYRVI 435
           ++   +H ++ EIY ++
Sbjct: 511 VSCGKKHPKSTEIYSLL 527



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/403 (22%), Positives = 146/403 (36%), Gaps = 99/403 (24%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           GF   N     +   C  +  L+     +HA+++K G   D    S +L F         
Sbjct: 20  GFVSGNTCLRLIDTRCSTMRELKQ----IHANLIKTGLISDTVAASRVLAFCC------- 68

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                  SP                  D   A  +F ++  +N   W+ I+  +SR S  
Sbjct: 69  ------ASPS-----------------DRNYAYLVFTRINHKNPFVWNTIIRGFSRSSFP 105

Query: 145 KEVLSLFRQM--QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           +  +S+F  M      +KP      SV  A A LG    G  +H    +  LE +  +  
Sbjct: 106 EMAISIFIDMLCSSPSVKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRN 165

Query: 203 AVVDMY-------------------------------SKCGHVHSALSVFEGISNKDAGA 231
            ++ MY                               +KCG +  A  +F+ +  ++  +
Sbjct: 166 TMLHMYVTCGCLVEAWRLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEMPQRNGVS 225

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMV 280
           WN+MISG   NG  K +LE+F  M +   +P   T V++L  C            H  +V
Sbjct: 226 WNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIV 285

Query: 281 RDGLNL-----------------FENMSAVYGVEP--QLEHYACVVDLLARAGMVEEA-E 320
           R+   L                 FE    V+   P  QL  +  ++  LA  G  E A +
Sbjct: 286 RNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMD 345

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
            F+E +  GL     +  G +L+AC   G++      +R + E
Sbjct: 346 LFLELERTGLEPDSVSFIG-VLTACAHSGEVHKAGEFFRLMRE 387


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 163/416 (39%), Positives = 242/416 (58%), Gaps = 15/416 (3%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P  +T    + AC  L      G  +H + VK     +P+V ++LL  Y+   +   
Sbjct: 119 GLLPTAHTLSASLPACGCLA----VGRALHGYAVKLALSGEPYVATALLGMYARAGEAAA 174

Query: 85  ARALFDK-SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           ARALFD   PD  VV+ T M+  Y KMG  ++AR LF+ +P ++ V W+A+M  Y++   
Sbjct: 175 ARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGR 234

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY----AKRYHLEKNVI 199
             E L LFRQM   G++P+E  +V  L+A A LG    G W+HS+     +R  +  N  
Sbjct: 235 PSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNAR 294

Query: 200 LATAVVDMYSKCGHVHSALSVFE---GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           + TA+VDMY KCG +  A++VF    G  ++D  AWNAMI+G AM+G ++++LE F ++ 
Sbjct: 295 VGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLR 354

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G  PT+ TF+ VL  C+H+ +V +G  LF  M   YG+ P++EHY C+VDLL RAG V
Sbjct: 355 AQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRV 414

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           EEA   ++         DA +W +LL ACR++  + +G RV   L   G+ +  T+VL  
Sbjct: 415 EEAFDLVQSMK---AKPDAAMWASLLGACRLHKNLALGQRVADYLVGNGLANSGTYVLLS 471

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           N+Y  AG   E  +VR ++  +G++K+PGCS +EV   V EF+AGD  H ++ EIY
Sbjct: 472 NMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDRSHPRSAEIY 527



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 41/274 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q   P  ++  +  ML  G EP+  +    + A   LG  E+ G ++H+ V   
Sbjct: 225 MMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAES-GRWLHSFVANG 283

Query: 61  GFGE----DPFVVSSLLEFYSLVHKMGTARALFDK---SPDRDVVTWTTMVDGYGKMGDF 113
           G       +  V ++L++ Y     +  A A+F       DRDVV W  M++GY   G  
Sbjct: 284 GRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHG-- 341

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
                                          +E L  F Q++  G+ P +   + VL AC
Sbjct: 342 -----------------------------RSREALEAFGQLRAQGLWPTDITFIGVLNAC 372

Query: 174 AHLGAITQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGA 231
           +H G + +G  +  +  + Y +   V     +VD+  + G V  A  + + +  K DA  
Sbjct: 373 SHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAM 432

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           W +++    ++ +      + D +V +G   + T
Sbjct: 433 WASLLGACRLHKNLALGQRVADYLVGNGLANSGT 466


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 166/438 (37%), Positives = 253/438 (57%), Gaps = 20/438 (4%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           RG   A    LS      +L  G  P  +T    + AC  L      G  +H + VK   
Sbjct: 106 RGLHHAALALLSEM----LLSHGLLPTAHTLSASLPACGGLA----VGRALHGYAVKLAL 157

Query: 63  GEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENARELFE 121
             +P+V ++LL  Y+       AR LFD   PD  VV+ T M+  Y KMG  ++AR LF+
Sbjct: 158 SGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFD 217

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            +P ++ + W+A+M  Y++     E L LFR+M   G++P+E  +V  L+A A LG    
Sbjct: 218 GLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAES 277

Query: 182 GLWVHSY-----AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE--GISNKDAGAWNA 234
           G W+HS+     ++R  L  N  + TA++DMY KCG +  A++VF   G  ++D  AWNA
Sbjct: 278 GRWLHSFVTNSSSRRVRL--NARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNA 335

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M++G AM+G ++++L  F ++   G  PT+ TF+ VL  C+H+ +V +G  LF +M+  Y
Sbjct: 336 MVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEY 395

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+EP++EHY C+VDLL RAG VEEA + ++         DA +W +LL+ACR++  +E+G
Sbjct: 396 GIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMT--RTKPDAVMWASLLAACRLHKNMELG 453

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
            R+   L   G+ +  T+VL  N+Y  AG   E  +VR ++  +G++K+PGCS +EV   
Sbjct: 454 QRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRR 513

Query: 415 VEEFLAGDNRHAQAGEIY 432
           V EF+AGD  H +A EIY
Sbjct: 514 VVEFVAGDRSHPRAAEIY 531



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 123/270 (45%), Gaps = 34/270 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q   P  ++  +  ML  G EP+  +    + A   LG  E+ G ++H+     
Sbjct: 230 MMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAES-GRWLHS----- 283

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                 FV +S      L  ++GTA                 ++D Y K G  E+A  +F
Sbjct: 284 ------FVTNSSSRRVRLNARVGTA-----------------LIDMYYKCGSLEDAVAVF 320

Query: 121 EKM--PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
             +   +R+ V+W+A++  Y+     +E L+ F Q++  G+ P +   + VL AC+H G 
Sbjct: 321 GDLGAGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGL 380

Query: 179 ITQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAM 235
           + +G  +  S A+ Y +E  V     +VD+  + G V  A  + + ++    DA  W ++
Sbjct: 381 VDEGRELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASL 440

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           ++   ++ + +    + D +V +G   + T
Sbjct: 441 LAACRLHKNMELGQRIADHLVANGLANSGT 470


>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 498

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 163/437 (37%), Positives = 247/437 (56%), Gaps = 10/437 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG M    P  S+  + ++L    +P+NYT+  ++KAC     L   G  VH  ++K 
Sbjct: 58  MIRGLMLGKRPYDSLLLFNELLLGCLKPDNYTYTFVLKACSNQKALPE-GKQVHCQIIKA 116

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  + SSL+  Y+    +  A  +  +  + + +   +M+ GY   G  + AR +F
Sbjct: 117 GISPNTHIHSSLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMF 176

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M  ++  SWSAI+   ++     E L+LF  M      PNES LVS+L+ACAHLGA+ 
Sbjct: 177 DQMKAKDVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNESALVSLLSACAHLGALH 236

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y  R   + ++ L+TA++DMY+KCG + S    F  +  +D   W A+ISG A
Sbjct: 237 QGRWIHAYIDRIGADMSIRLSTALIDMYAKCGDIQSGYKFFRKMPRRDIVTWGAIISGFA 296

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           + G AKK  ELF+ M+  G  P    FVA+L+ C+HA  V +G   F  M    G+ P +
Sbjct: 297 IYGQAKKCFELFEEMLADGIYPNGVIFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSI 356

Query: 301 EHYACVVDLLARAGMVEEAEKFI---EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           EHY C+VDLL RAG ++EAE+FI    EK       ++ +WG++LSACR +  +  G+  
Sbjct: 357 EHYGCMVDLLGRAGRLKEAEEFIISMPEK------PNSVIWGSMLSACRTHNDLNRGSWA 410

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           +R L E+       + L+  ++  AG   EA K+RK+I + GM+   G S IEV+G + E
Sbjct: 411 FRHLIELEPRSGDRYKLAGLMFGNAGEKQEATKIRKMIEDQGMETTSGSSFIEVDGTIHE 470

Query: 418 FLAGDNRHAQAGEIYRV 434
           FL GD  H +A EIY+V
Sbjct: 471 FLVGDTIHNEAAEIYKV 487



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 141/299 (47%), Gaps = 13/299 (4%)

Query: 72  LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDG--YGK--MGDFENARELFEKMPERN 127
           LLE Y  + ++  AR++F++ P  DV  + TM+ G   GK          EL     + +
Sbjct: 27  LLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFNELLLGCLKPD 86

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
             +++ ++ A S      E   +  Q+ + G+ PN     S++      G+I +   V  
Sbjct: 87  NYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECV-- 144

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
              R   E+N +   +++  Y   GHV  A ++F+ +  KD  +W+A+I+G   NG   +
Sbjct: 145 --LREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTE 202

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           +L LF+ M+ S T P E+  V++L+ C H   +  G  +   +  + G +  +     ++
Sbjct: 203 ALALFEDMMVSHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRI-GADMSIRLSTALI 261

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           D+ A+ G ++   KF  +    +   D   WGA++S   IYG+ +    ++ ++   GI
Sbjct: 262 DMYAKCGDIQSGYKFFRK----MPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGI 316



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 1/132 (0%)

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           L  + +    +++ Y     +  A S+FE I   D   +N MI G+ +      SL LF+
Sbjct: 17  LNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLGKRPYDSLLLFN 76

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            ++    +P   T+  VL  C++ K + +G  +   +    G+ P    ++ ++ +   +
Sbjct: 77  ELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKA-GISPNTHIHSSLIHMYTSS 135

Query: 314 GMVEEAEKFIEE 325
           G + EAE  + E
Sbjct: 136 GSIVEAECVLRE 147


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  305 bits (780), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 256/446 (57%), Gaps = 8/446 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I+ +     P      Y  M   G  PN Y+F  L  AC  L  +   G  +H+H  K G
Sbjct: 54  IQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYP-GQMLHSHFCKSG 112

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  D F +++LL+ Y+ +  + +AR LFD+ P RD+ TW +++ GY + G  E A ELF 
Sbjct: 113 FASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFN 172

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAIT 180
           KMP RN +SW+A+++ Y++   + + L +F  ++ E G KPNE  + SVL AC+ LGA+ 
Sbjct: 173 KMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALD 232

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGV 239
            G  + +YA+     KN  ++ AV++++++CG++  A  VF+ I S ++  +WN MI G+
Sbjct: 233 IGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGL 292

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G    +L+L+D+M+    +P + TFV +L  CTH  MV +G  LFE+M + + V P+
Sbjct: 293 AVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPK 352

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C+VDLL RAG ++EA   I+         D+ +WG LL AC  +G +E+G     
Sbjct: 353 LEHYGCLVDLLGRAGELQEAYNLIQNMP---MAPDSVIWGTLLGACSFHGNVELGEVAAE 409

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L ++   +   +V+  NIY  AG W   A ++RK++    + K+ G S IEV   + EF
Sbjct: 410 SLFKLEPWNPGNYVILSNIYALAGDWSGVA-RLRKMMKGGHITKRAGYSYIEVGDGIHEF 468

Query: 419 LAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +  D  H ++GEIY ++H    +  L
Sbjct: 469 IVEDRSHLKSGEIYALLHKIYDIIKL 494



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 40/282 (14%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +++   ++ D   A  LF+++P+ +   ++  +  +S I        L+ QM   G  PN
Sbjct: 22  LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPN 81

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +     +  ACA L  +  G  +HS+  +     ++   TA++DMY+K G + SA  +F+
Sbjct: 82  QYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFD 141

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-------------------------- 256
            +  +D   WN++I+G A +G  + +LELF++M                           
Sbjct: 142 EMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEM 201

Query: 257 ------KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
                 + GT+P E +  +VL  C+    +  G  + E  +   G          V++L 
Sbjct: 202 FIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRI-EAYARNNGFFKNAYVSNAVLELH 260

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGK 350
           AR G +EEA++  +E      G   N+  W  ++    ++G+
Sbjct: 261 ARCGNIEEAQQVFDEI-----GSKRNLCSWNTMIMGLAVHGR 297


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 254/442 (57%), Gaps = 16/442 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +IRG+ +++FP++++  ++DML      +P   T+P + KA   LG   + G  +H  V+
Sbjct: 95  IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARD-GRQLHGMVI 153

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G  +D F+ +++L  Y     +  A  +F      DVV W +M+ G+ K G  + A+ 
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQN 213

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF++MP+RN VSW+++++ + R   FK+ L +FR+MQE  +KP+   +VS+L ACA+LGA
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGA 273

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             QG W+H Y  R   E N I+ TA++DMY KCG +   L+VFE    K    WN+MI G
Sbjct: 274 SEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG 333

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A NG  +++++LF  + +SG +P   +F+ VLT C H+  V      F  M   Y +EP
Sbjct: 334 LANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEP 393

Query: 299 QLEHYACVVDLLARAGMVEEAEKFI-----EEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            ++HY  +V++L  AG++EEAE  I     EE        D  +W +LLSACR  G +E+
Sbjct: 394 SIKHYTLMVNVLGGAGLLEEAEALIKNMPVEE--------DTVIWSSLLSACRKIGNVEM 445

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
             R  + L ++   +   +VL  N Y   G   EA + R L+ E  M+K+ GCS IEV+ 
Sbjct: 446 AKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDF 505

Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
            V EF++    H ++ EIY ++
Sbjct: 506 EVHEFISCGGTHPKSAEIYSLL 527



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 77/353 (21%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSV 169
           D   A  +F ++  +N   W+ I+  +SR S  +  +S+F  M      +KP      SV
Sbjct: 73  DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY--------------------- 208
             A   LG    G  +H    +  LE +  +   ++ MY                     
Sbjct: 133 FKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDV 192

Query: 209 ----------SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
                     +KCG +  A ++F+ +  ++  +WN+MISG   NG  K +L++F  M + 
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252

Query: 259 GTQPTETTFVAVLTTCT-----------HAKMVR------------------------DG 283
             +P   T V++L  C            H  +VR                        +G
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG 312

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWGALL 342
           LN+FE        + QL  +  ++  LA  G  E A + F E +  GL     +  G +L
Sbjct: 313 LNVFE-----CAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIG-VL 366

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFST--HVLSYNIYKEAGWDMEANKVRK 393
           +AC   G++   +  +R + E  + + S   + L  N+   AG   EA  + K
Sbjct: 367 TACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIK 419


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 155/382 (40%), Positives = 240/382 (62%), Gaps = 7/382 (1%)

Query: 57  VVKFGFGEDP--FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE 114
           V  FG  ++P  F  ++++  ++L   + +A+ LFD  P++ +V+ T M+  Y K G+ +
Sbjct: 82  VALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELD 141

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
            AR LF+ M ER+ V W+ ++  Y++     E L LFR+M +   KPNE  ++SVL+AC 
Sbjct: 142 AARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACG 201

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            LGA+  G WVHSY +   ++ NV + TA+VDMYSKCG +  A  VF+ I +KD  AWN+
Sbjct: 202 QLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNS 261

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI G AM+G ++++L+LF  M + G  PT  TF+ +L+ C H+  V +G ++F  M   Y
Sbjct: 262 MIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEY 321

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+EP++EHY C+V+LL RAG VE+A + ++         D  +WG LL ACR++GKI +G
Sbjct: 322 GIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALG 378

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNG 413
            ++   L +  + +  T++L  NIY   G WD  A ++R ++ ++G+KK+PGCS IEVN 
Sbjct: 379 EKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVA-RLRTMMKDSGVKKEPGCSSIEVNN 437

Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
            V EFLAG   H +  EIY ++
Sbjct: 438 KVHEFLAGGLNHPKRKEIYMML 459



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 39/267 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q   P  ++  +  ML    +PN  T   ++ AC  LG LE+ G +VH+++   
Sbjct: 161 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALES-GRWVHSYIENN 219

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  V ++L++ YS    +  AR +FDK  D+DVV W +M+ GY             
Sbjct: 220 GIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYA------------ 267

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                         M  +S     +E L LF+ M  +G+ P     + +L+AC H G +T
Sbjct: 268 --------------MHGFS-----QEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVT 308

Query: 181 QGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  + +  K  Y +E  +     +V++  + GHV  A  + + ++   D   W  ++  
Sbjct: 309 EGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGA 368

Query: 239 VAMNGD---AKKSLELF--DRMVKSGT 260
             ++G     +K +EL     +  SGT
Sbjct: 369 CRLHGKIALGEKIVELLVDQNLANSGT 395



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 10/196 (5%)

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            I+  L +H+   R+ L+ + IL   +   Y+  G +  ++++F    N     W A+I 
Sbjct: 42  TISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIH 101

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G A+ GD   + +LFD M     + +  +  A+LT       +     LF+ M    GV 
Sbjct: 102 GHALRGDVVSAQQLFDTM----PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 157

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
                +  ++D   + GM  EA       +      +     ++LSAC   G +E G  V
Sbjct: 158 -----WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWV 212

Query: 358 WRKLAEMGITDFSTHV 373
              +   GI  F+ HV
Sbjct: 213 HSYIENNGI-QFNVHV 227


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  304 bits (778), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 256/469 (54%), Gaps = 41/469 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+  N    ++  +  ML   F P++YTFP ++KAC  L  L   G+ VH  +VK 
Sbjct: 108 MIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLR-VGLQVHDAIVKV 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE-- 118
           G   + F+ ++L+  Y     +  AR + D+ P RDVV+W +MV GY + G F++A E  
Sbjct: 167 GLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEIC 226

Query: 119 -----------------------------------LFEKMPERNAVSWSAIMAAYSRISD 143
                                              +FE+M ++N +SW+ ++A Y   S 
Sbjct: 227 KEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSM 286

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             E +SLF QM+E GMKP+   + S+L AC  L A+  G  +H Y ++ +L+ N++L  A
Sbjct: 287 PNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENA 346

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A  VF+ +  +D  +W +M+S    +G    ++ LF +M+ SG  P 
Sbjct: 347 LLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPD 406

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV+VL+ C+H  ++  G + F  M+  YG+ P++EH+AC+VDL  RAG VEEA  FI
Sbjct: 407 SIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFI 466

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           ++        +  VWGALLSACR++ K+++G      L ++       +VL  NIY +AG
Sbjct: 467 KQMP---MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAG 523

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              +   VR  + + G+KK PG S +E+NG V  FLAGD  H QA  IY
Sbjct: 524 MWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIY 572



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 140/323 (43%), Gaps = 22/323 (6%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D      ++  Y   G+   AR +F++  E+N V ++ ++ +Y   + + E LS+F+ M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
                P+      VL AC+ L  +  GL VH    +  L+ N+ +  A+V MY KCG + 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  V + +  +D  +WN+M++G A +G    +LE+   M          T  ++     
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 276 HAKM--VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGG 332
           +  +  V+   N+FE M+     +  L  +  ++ +     M  EA   F++ +  G+  
Sbjct: 250 YTSLENVQYIHNMFERMT-----KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGM-K 303

Query: 333 GDANVWGALLSAC----------RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
            DA    +LL AC          R++  IE GN     L E  + D           +EA
Sbjct: 304 PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKC---GCLEEA 360

Query: 383 GWDMEANKVRKLISETGMKKKPG 405
               +  ++R ++S T M    G
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYG 383



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           HL  +  LA  ++  YS  G    A  +F+    K+   +N MI     N    ++L +F
Sbjct: 66  HLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIF 125

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
             M+     P   TF  VL  C+    +R GL + + +  V G++  L     +V +  +
Sbjct: 126 QVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKV-GLDTNLFIGNALVAMYGK 184

Query: 313 AGMVEEAEKFIEE 325
            G + EA K +++
Sbjct: 185 CGCLREARKVLDQ 197


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/469 (35%), Positives = 255/469 (54%), Gaps = 41/469 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+  N    ++  +  ML   F P++YTFP ++KAC  L  L   G+ VH  +VK 
Sbjct: 108 MIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLR-VGLQVHDAIVKV 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE-- 118
           G   + F+ ++L+  Y     +  AR + D+ P RDVV+W +MV GY + G F++A E  
Sbjct: 167 GLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEIC 226

Query: 119 -----------------------------------LFEKMPERNAVSWSAIMAAYSRISD 143
                                              +FE+M ++N +SW+ ++A Y   S 
Sbjct: 227 KEMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSM 286

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             E +SLF QM+E GMKP+   + S+L AC  L A+  G  +H Y ++ +L  N++L  A
Sbjct: 287 PNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENA 346

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A  VF+ +  +D  +W +M+S    +G    ++ LF +M+ SG  P 
Sbjct: 347 LLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPD 406

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV+VL+ C+H  ++  G + F  M+  YG+ P++EH+AC+VDL  RAG VEEA  FI
Sbjct: 407 SIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFI 466

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           ++        +  VWGALLSACR++ K+++G      L ++       +VL  NIY +AG
Sbjct: 467 KQMP---MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAG 523

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              +   VR  + + G+KK PG S +E+NG V  FLAGD  H QA  IY
Sbjct: 524 MWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIY 572



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 140/323 (43%), Gaps = 22/323 (6%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D      ++  Y   G+   AR +F++  E+N V ++ ++ +Y   + + E LS+F+ M 
Sbjct: 70  DPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVML 129

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
                P+      VL AC+ L  +  GL VH    +  L+ N+ +  A+V MY KCG + 
Sbjct: 130 SCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLR 189

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  V + +  +D  +WN+M++G A +G    +LE+   M          T  ++     
Sbjct: 190 EARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC 249

Query: 276 HAKM--VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGG 332
           +  +  V+   N+FE M+     +  L  +  ++ +     M  EA   F++ +  G+  
Sbjct: 250 YTSLENVQYIHNMFERMT-----KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGM-K 303

Query: 333 GDANVWGALLSAC----------RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
            DA    +LL AC          R++  IE GN     L E  + D           +EA
Sbjct: 304 PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKC---GCLEEA 360

Query: 383 GWDMEANKVRKLISETGMKKKPG 405
               +  ++R ++S T M    G
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYG 383



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           HL  +  LA  ++  YS  G    A  +F+    K+   +N MI     N    ++L +F
Sbjct: 66  HLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIF 125

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
             M+     P   TF  VL  C+    +R GL + + +  V G++  L     +V +  +
Sbjct: 126 QVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKV-GLDTNLFIGNALVAMYGK 184

Query: 313 AGMVEEAEKFIEE 325
            G + EA K +++
Sbjct: 185 CGCLREARKVLDQ 197


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/439 (38%), Positives = 258/439 (58%), Gaps = 8/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY + N+   ++  +  ML    +PN  T   L+ AC   G  E  G  +H H+ + 
Sbjct: 224 MINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSE-MGKTLHEHIRRK 282

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  +++++L+ Y     + TAR +F+    RDV +WT++++GY K GD  +AR+LF
Sbjct: 283 DITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLF 342

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAI 179
           ++MPERN VSW+A++A YS+ S   E L LF  M +V G+ P E  LV VL+A   LG +
Sbjct: 343 DEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCL 402

Query: 180 TQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             G  +H ++  +  ++ ++IL  AV+DMY+KCG + +A  +F  +  K+  +WN+MIS 
Sbjct: 403 EMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISA 462

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A  G AKK+L LFD+M+ SG +P   TF+ VL+ C++   V +G   FE+M   +GVEP
Sbjct: 463 YASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEP 522

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           + EHYAC+VDLL+R G+++EA + I    M    GG    WGALL ACR +G +E+    
Sbjct: 523 KREHYACMVDLLSRVGLLKEAYELISRMPMEASEGG----WGALLDACRKHGNVEMAKLA 578

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             KL E+   D   + L  NI  +     +   VR+++ E G+KK PG S+IE+ G   E
Sbjct: 579 GEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFHE 638

Query: 418 FLAGDNRHAQAGEIYRVIH 436
           FL  D  H ++ EIYRV++
Sbjct: 639 FLVADTSHTRSSEIYRVVN 657



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 183/383 (47%), Gaps = 37/383 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY +AN P +    +  M+    E ++ +F   +KAC      +  GM VH+ + K 
Sbjct: 123 MIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAE-KIVGMAVHSVIWKR 181

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV + L++ Y     +G AR +FD+S  +DVVTWTTM++GY             
Sbjct: 182 GFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYA------------ 229

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                RN  +W              E ++LF  M    +KPNE  ++++L+AC+  G   
Sbjct: 230 -----RN--NW------------LDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSE 270

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H + +R  +  ++ L  A++DMY KCG + +A  +F  +  +D  +W ++++G A
Sbjct: 271 MGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYA 330

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NGD   + +LFD M +        ++ A++   +      + L LF NM  V G+ P  
Sbjct: 331 KNGDLGSARKLFDEMPERNI----VSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTE 386

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW-GALLSACRIYGKIEVGNRVWR 359
           +   CV+    + G +E  ++     +  +G   + +   A++      G I+   +++ 
Sbjct: 387 DTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFH 446

Query: 360 KLAEMGITDFSTHVLSYNIYKEA 382
            + E  +  +++ + +Y  Y  A
Sbjct: 447 SMPEKNLVSWNSMISAYASYGHA 469


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 265/442 (59%), Gaps = 7/442 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G++Q   P  ++  +  M     + ++ T   ++ AC  +  LE FG  V +++ + 
Sbjct: 205 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLE-FGRRVCSYIEEN 263

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  + +++L+ Y+    +  A+ LFD   ++D VTWTTM+DGY    D+E ARE+ 
Sbjct: 264 RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVL 323

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
             MP+++ V+W+A+++AY +     E L +F ++Q +  +K N+  LVS L+ACA +GA+
Sbjct: 324 NAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGAL 383

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+HSY K+  ++ N  + +A++ MYSKCG +  A  VF  +  +D   W+AMI G+
Sbjct: 384 ELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGL 443

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G   +++++F +M ++  +P   TF  V   C+H  +V +  +LF  M + YG+ P+
Sbjct: 444 AMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPE 503

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HYAC+VD+L R+G +E+A KFIE           +VWGALL AC+I+  + +      
Sbjct: 504 DKHYACIVDVLGRSGYLEKAVKFIE---AMPIPPSTSVWGALLGACKIHANLSLAEMACT 560

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L E+   +   HVL  NIY ++G WD   +++RK +  TG+KK+PGCS IE++G++ EF
Sbjct: 561 RLLELEPRNDGAHVLLSNIYAKSGKWD-NVSELRKHMRVTGLKKEPGCSSIEIDGMIHEF 619

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
           L+GDN H  + ++Y  +H  ++
Sbjct: 620 LSGDNAHPMSEKVYGKLHEVME 641



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 126/259 (48%), Gaps = 34/259 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE--PNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +IR Y     P  S++ +LDM+    +  PN YTFP LIKA   +  L + G  +H   +
Sbjct: 102 LIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSL-SLGQSLHGMAI 160

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K   G D FV +SL+  Y     + +A  +F    ++DVV+W +M++G+ + G  + A E
Sbjct: 161 KSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALE 220

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+KM   +                               +K +   +V VL+ACA +  
Sbjct: 221 LFKKMESED-------------------------------VKASHVTMVGVLSACAKIRD 249

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  V SY +   +  N+ LA A++DMY+KCG +  A  +F+ +  KD   W  M+ G
Sbjct: 250 LEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDG 309

Query: 239 VAMNGDAKKSLELFDRMVK 257
            A++ D + + E+ + M K
Sbjct: 310 YAISEDYEAAREVLNAMPK 328



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 173/409 (42%), Gaps = 55/409 (13%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           LI  C  L  L+      HAH+++ G   DP+  S L    +L                 
Sbjct: 37  LIDRCSSLRQLKQ----THAHMIRTGMFSDPYSASKLFAIAAL----------------- 75

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM- 154
                             E AR++F+++P+ N+ +W+ ++ AY+   D    +  F  M 
Sbjct: 76  ------------SSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMV 123

Query: 155 -QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
             E    PN+     ++ A A + +++ G  +H  A +  +  +V +A +++  Y  CG 
Sbjct: 124 SSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGD 183

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           + SA  VF  I  KD  +WN+MI+G    G   K+LELF +M     + +  T V VL+ 
Sbjct: 184 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSA 243

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C   + +  G  +   +     V   L     ++D+  + G +E+A++  +     +   
Sbjct: 244 CAKIRDLEFGRRVCSYIEE-NRVNVNLTLANAMLDMYTKCGSIEDAKRLFD----AMEEK 298

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393
           D   W  +L    I    E    V   + +  I  ++  +   + Y++ G   + N+   
Sbjct: 299 DNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALI---SAYEQNG---KPNEALL 352

Query: 394 LISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG--EIYRVIHSFLK 440
           +  E  ++K      I++N +    ++  +  AQ G  E+ R IHS++K
Sbjct: 353 VFHELQLQKN-----IKLNQIT--LVSTLSACAQVGALELGRWIHSYIK 394


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 153/441 (34%), Positives = 262/441 (59%), Gaps = 5/441 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G++Q   P  ++  +  M     + ++ T   ++ AC  +  LE FG  V +++ + 
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE-FGRQVCSYIEEN 261

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  + +++L+ Y+    +  A+ LFD   ++D VTWTTM+DGY    D+E ARE+ 
Sbjct: 262 RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVL 321

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
             MP+++ V+W+A+++AY +     E L +F ++Q +  MK N+  LVS L+ACA +GA+
Sbjct: 322 NSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL 381

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+HSY K++ +  N  + +A++ MYSKCG +  +  VF  +  +D   W+AMI G+
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGL 441

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G   +++++F +M ++  +P   TF  V   C+H  +V +  +LF  M + YG+ P+
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HYAC+VD+L R+G +E+A KFIE           +VWGALL AC+I+  + +      
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIE---AMPIPPSTSVWGALLGACKIHANLNLAEMACT 558

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L E+   +   HVL  NIY + G     +++RK +  TG+KK+PGCS IE++G++ EFL
Sbjct: 559 RLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFL 618

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
           +GDN H  + ++Y  +H  ++
Sbjct: 619 SGDNAHPMSEKVYGKLHEVME 639



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 126/256 (49%), Gaps = 33/256 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y     P LS++ +LDM+ +    PN YTFP LIKA   +  L + G  +H   VK
Sbjct: 101 LIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL-SLGQSLHGMAVK 159

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              G D FV +SL+  Y     + +A  +F    ++DVV+W +M++G+ + G  + A EL
Sbjct: 160 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALEL 219

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+KM   +                               +K +   +V VL+ACA +  +
Sbjct: 220 FKKMESED-------------------------------VKASHVTMVGVLSACAKIRNL 248

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  V SY +   +  N+ LA A++DMY+KCG +  A  +F+ +  KD   W  M+ G 
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 308

Query: 240 AMNGDAKKSLELFDRM 255
           A++ D + + E+ + M
Sbjct: 309 AISEDYEAAREVLNSM 324



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 177/410 (43%), Gaps = 58/410 (14%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           LI+ CV L  L+      H H+++ G   DP+  S L    +L                 
Sbjct: 36  LIERCVSLRQLKQ----THGHMIRTGTFSDPYSASKLFAMAAL----------------- 74

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF---R 152
                             E AR++F+++P+ N+ +W+ ++ AY+   D   VLS++    
Sbjct: 75  ------------SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPD--PVLSIWAFLD 120

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
            + E    PN+     ++ A A + +++ G  +H  A +  +  +V +A +++  Y  CG
Sbjct: 121 MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG 180

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            + SA  VF  I  KD  +WN+MI+G    G   K+LELF +M     + +  T V VL+
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
            C   + +  G  +   +     V   L     ++D+  + G +E+A++  +     +  
Sbjct: 241 ACAKIRNLEFGRQVCSYIEE-NRVNVNLTLANAMLDMYTKCGSIEDAKRLFD----AMEE 295

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392
            D   W  +L    I    E    V   + +  I  ++  +   + Y++ G   + N+  
Sbjct: 296 KDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI---SAYEQNG---KPNEAL 349

Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG--EIYRVIHSFLK 440
            +  E  ++K      +++N +    ++  +  AQ G  E+ R IHS++K
Sbjct: 350 IVFHELQLQKN-----MKLNQIT--LVSTLSACAQVGALELGRWIHSYIK 392


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  303 bits (776), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 168/456 (36%), Positives = 261/456 (57%), Gaps = 40/456 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  ++ P++++  + +ML     P+ Y+F  ++KAC      E  G  +H   +K 
Sbjct: 81  VIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEE-GRQIHGLFMKS 139

Query: 61  GFGEDPFVVSSLLEFY----------SLVHKMGT---------------------ARALF 89
               D FV ++L+  Y           ++ +M                       ARALF
Sbjct: 140 DLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALF 199

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
           D+  +R+V +W  M+ GY   G  + ARE+F+ MP ++ VSW+A++ AY+ +  + EVL 
Sbjct: 200 DEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLE 259

Query: 150 LFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           +F  M  +   +P+   LV+VL+ACA LG+++QG WVH Y  ++ +E    +ATA+VDMY
Sbjct: 260 VFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMY 319

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           SKCG +  AL VF   S +D   WN++I+G++++G  K +LE+F  MV  G +P   TF+
Sbjct: 320 SKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFI 379

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            VL+ C H  ++     LFE M++VYG+EP +EHY C+VDLL R G  EEAE+ + E   
Sbjct: 380 GVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNE--- 436

Query: 329 GLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
            +   +A++   +LL AC+ +GK+E   R+  +L E    + S +V   N+Y   G WD 
Sbjct: 437 -VPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRESSGYVQMSNLYASHGRWD- 494

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           EA +VR  +    +KK PGCS+IEV+GVV EFLAG+
Sbjct: 495 EAMEVRGKMRAERVKKNPGCSMIEVDGVVHEFLAGE 530



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/237 (20%), Positives = 106/237 (44%), Gaps = 32/237 (13%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA ++K G   D F  S L+ F +              +P+   V++             
Sbjct: 29  HAFMLKTGLFHDTFSASKLVAFAA-------------TNPEPKTVSY------------- 62

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  +  ++   N  + ++++ AY+  S  +  L++FR+M    + P++     VL AC
Sbjct: 63  --AHSILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKAC 120

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A      +G  +H    +  L  +V +   ++++Y + G+   A  V + +  +DA +WN
Sbjct: 121 AAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRDAVSWN 180

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +++S     G  +++  LFD M +   +    ++  +++    A +V++   +F++M
Sbjct: 181 SLLSAYLDKGLVEEARALFDEMEERNVE----SWNFMISGYAAAGLVKEAREVFDSM 233


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 171/446 (38%), Positives = 257/446 (57%), Gaps = 24/446 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLEN----FGMFVHAH 56
           M RGY Q+   +  +FC +      FE N   +  +I   ++   L +    F +     
Sbjct: 22  MFRGYAQSESYR-EIFCEM------FERNVVAWTSMINGYILSADLVSARRLFDLAPERD 74

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           VV +       +VS  +E   +V     AR LF + P+RDV+ W T++ GY   G+ E  
Sbjct: 75  VVLWNI-----MVSGYIEGGDMVE----ARKLFHEMPNRDVMFWNTVLKGYATNGNVEAL 125

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAH 175
             LFE+MPERN  SW+A++  Y+    F EVL  F++M  E  + PN++ LV+VL+ACA 
Sbjct: 126 EGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACAR 185

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G WVH YA+   L+ NV +  A++DMY+KCG + +A+SVF G+  KD  +WN +
Sbjct: 186 LGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNTL 245

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+AM+     +L LF +M  +G +P   TF+ +L  CTH  +V DG   F++M+  Y 
Sbjct: 246 IGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYL 305

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + PQ+EHY C+VD+LARAG +E+A  F+  KM      D  +W  LL ACRIY  +E+  
Sbjct: 306 IMPQIEHYGCMVDMLARAGRLEQAMAFV-RKMP--VEADGVIWAGLLGACRIYKNVELAE 362

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
              ++L E+   + + +V+  NIY +AG   +  +++  + +TG KK PGCS+IEVN  V
Sbjct: 363 LALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAV 422

Query: 416 EEFLAGDNRHAQAGEIYRVIHSFLKM 441
            EF + D RH Q  EIY V+   +K+
Sbjct: 423 VEFYSLDERHPQIEEIYGVLRGLVKV 448



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 130/274 (47%), Gaps = 25/274 (9%)

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           M  AR LFD+ PD ++  W +M  GY +    E+ RE+F +M ERN V+W++++  Y   
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQS---ESYREIFCEMFERNVVAWTSMINGYILS 57

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVI 199
           +D      LF    E      +  L +++ +    G I  G  V +  K +H    ++V+
Sbjct: 58  ADLVSARRLFDLAPE-----RDVVLWNIMVS----GYIEGGDMVEA-RKLFHEMPNRDVM 107

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KS 258
               V+  Y+  G+V +   +FE +  ++  +WNA+I G A NG   + L  F RM+ +S
Sbjct: 108 FWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSES 167

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
              P + T V VL+ C     +  G  ++++   S   G++  +     ++D+ A+ G++
Sbjct: 168 DVPPNDATLVTVLSACARLGALDLGKWVHVYAESS---GLKGNVYVGNALMDMYAKCGII 224

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           E A         G+   D   W  L+    ++ +
Sbjct: 225 ENAISVFR----GMDTKDLISWNTLIGGLAMHSR 254


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  302 bits (774), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 159/467 (34%), Positives = 260/467 (55%), Gaps = 36/467 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG +   + + ++  Y+ ML     P +Y+F  LIKAC +L     FG  VH HV K 
Sbjct: 47  LIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVD-SAFGEAVHGHVWKH 105

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---------------- 104
           GF    FV ++L+EFYS    +G +R +FD  P+RDV  WTTM+                
Sbjct: 106 GFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTMISAHVRDGDMASAGRLF 165

Query: 105 ---------------DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                          DGYGK+G+ E+A  LF +MP R+ +SW+ +M  YSR   +KEV++
Sbjct: 166 DEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIA 225

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LF  + + GM P+E  + +V++ACAHLGA+  G  VH Y      + +V + ++++DMY+
Sbjct: 226 LFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYA 285

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  AL VF  +  K+   WN +I G+A +G  +++L +F  M +   +P   TF++
Sbjct: 286 KCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFIS 345

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           +LT CTHA  + +G   F +M   Y + PQ+EHY C+VDLL++AG++E+A + I      
Sbjct: 346 ILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMT-- 403

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN 389
               ++ +WGALL+ C+++  +E+ +   + L  +  ++   + L  N+Y E     E  
Sbjct: 404 -VEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVA 462

Query: 390 KVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           K+R  + + G++K+ PG S +E+N  V  F A D  H    +++ ++
Sbjct: 463 KIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHLLL 509



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 61/140 (43%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A   F  +   N + ++A++         ++ L  +  M    + P      S++ AC  
Sbjct: 29  AASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTL 88

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L     G  VH +  ++  + +V + T +++ YS  G V  +  VF+ +  +D  AW  M
Sbjct: 89  LVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFDDMPERDVFAWTTM 148

Query: 236 ISGVAMNGDAKKSLELFDRM 255
           IS    +GD   +  LFD M
Sbjct: 149 ISAHVRDGDMASAGRLFDEM 168


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/430 (38%), Positives = 249/430 (57%), Gaps = 8/430 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML   F PN +TF  L  AC  L    + G  +H H +K GF  D F  ++LL+ Y+
Sbjct: 71  YSQMLLHSFLPNQHTFNFLFSACTSLSS-PSLGQMLHTHFIKSGFEPDLFAATALLDMYT 129

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
            V  +  AR LFD+ P R V TW  M+ G+ + GD + A ELF  MP RN VSW+ +++ 
Sbjct: 130 KVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISG 189

Query: 138 YSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           YSR   + E L LF +M QE GM PN   L S+  A A+LGA+  G  V +YA++    K
Sbjct: 190 YSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGFFK 249

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           N+ ++ AV++MY+KCG +  A  VF  I S ++  +WN+MI G+A++G+  K+L+L+D+M
Sbjct: 250 NLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQM 309

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           +  GT P + TFV +L  CTH  MV  G ++F++M+  + + P+LEHY C+VDLL RAG 
Sbjct: 310 LGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLGRAGQ 369

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           + EA + I+         D+ +WGALL AC  +  +E+       L  +   +   +V+ 
Sbjct: 370 LREAYEVIQRMP---MKPDSVIWGALLGACSFHDNVELAEIAAESLFALEPWNPGNYVIL 426

Query: 376 YNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
            NIY  AG WD  A K+RK++  + + K  G S IE  G + +F+  D  H ++ EI+ +
Sbjct: 427 SNIYASAGQWDGVA-KLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDRSHPESNEIFAL 485

Query: 435 IHSFLKMSNL 444
           +    +M  L
Sbjct: 486 LDGVYEMIKL 495



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 12/266 (4%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK-EVLSLFRQMQEVGMKP 161
           +++   ++ +   A ++    P+     ++ ++ AYS     + +  SL+ QM      P
Sbjct: 22  LIEKLLEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLP 81

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           N+     + +AC  L + + G  +H++  +   E ++  ATA++DMY+K G +  A  +F
Sbjct: 82  NQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLF 141

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           + +  +    WNAM++G A  GD   +LELF R++ S    + TT +   +  + +K   
Sbjct: 142 DQMPVRGVPTWNAMMAGHARFGDMDVALELF-RLMPSRNVVSWTTMI---SGYSRSKKYG 197

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW--G 339
           + L LF  M    G+ P     A +    A  G +E  ++   E      G   N++   
Sbjct: 198 EALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRV--EAYARKNGFFKNLYVSN 255

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMG 365
           A+L      GKI+V    W+   E+G
Sbjct: 256 AVLEMYAKCGKIDVA---WKVFNEIG 278


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  302 bits (773), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/439 (36%), Positives = 251/439 (57%), Gaps = 5/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  + Q  +   ++  Y +   +G + N ++F  ++  CV L  +      VH  ++  
Sbjct: 163 MVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEV-GLTRQVHGQILVA 221

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  + SS+L+ Y     MG AR LFD+   RDV+ WTTMV GY K GD ++A ELF
Sbjct: 222 GFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELF 281

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPE+N VSW+A+++ Y+R     + L LF +M    ++P++    S L ACA + ++ 
Sbjct: 282 VEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLK 341

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGV 239
            G  +H+Y  R + + N I+ +A++DMYSKCG +     VF+ + NK D   WN +IS +
Sbjct: 342 HGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISAL 401

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G  ++++++ D MV+SG +P + TFV +L  C+H+ +V+ GLN FE+MS  YG+ P 
Sbjct: 402 AQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPS 461

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHYAC++DLL RAG  EE    + EKM      D  VW ALL  CRI+G IE+G +   
Sbjct: 462 QEHYACLIDLLGRAGCFEEVMDQL-EKMP--YKPDDRVWNALLGVCRIHGHIELGRKAAE 518

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L E+     + +VL  +IY   G      KVR+L++E  +KK+   S +E+   V  F 
Sbjct: 519 RLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFS 578

Query: 420 AGDNRHAQAGEIYRVIHSF 438
             D+ H    +IY V+   
Sbjct: 579 VSDSSHPLKEQIYSVLEQL 597



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 163/357 (45%), Gaps = 37/357 (10%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVVSSLLEFYSLVHKMG 83
           G   ++ T   L++ C     L   G  VH H+   G      F+ + L+  Y+   K  
Sbjct: 54  GLRLDSRTLASLLQHCADSRALRE-GKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEV 112

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
            AR +FDK   R++ +W  M+ GY K+G  + AR+LF+KMPE++ VSW+ ++ A+++   
Sbjct: 113 EARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGY 172

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           + E L  + + +++G++ N      VLT C  L  +     VH          NV+L+++
Sbjct: 173 WDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSS 232

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK----------------- 246
           V+D Y KCG +  A  +F+ +S +D  AW  M+SG A  GD K                 
Sbjct: 233 VLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSW 292

Query: 247 --------------KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
                         K+LELF +M+    +P + TF + L  C     ++ G  +   +  
Sbjct: 293 TALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLR 352

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +   +P     + ++D+ ++ G +    K  +     L   D  +W  ++SA   +G
Sbjct: 353 I-NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL---DVVLWNTIISALAQHG 405


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  301 bits (772), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/440 (36%), Positives = 244/440 (55%), Gaps = 52/440 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY  +  P+ ++  Y  ML      N YTFP L+KAC  +  LE     +HAH++K 
Sbjct: 89  MIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQ-IHAHIIKM 147

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG + +  +SLL  YS                               K GD ++AR LF
Sbjct: 148 GFGSEIYTTNSLLNVYS-------------------------------KSGDIKSARLLF 176

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++ +R+                  E L+LF +MQ  G+K +   LVS L ACA LG + 
Sbjct: 177 DQVDQRDT-----------------EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLD 219

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H+Y K++ +E + IL   ++DMY+KCG +  A+ VF  +  K    W AMISG A
Sbjct: 220 QGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYA 279

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +++LE F +M  +G +P + TF  +LT C+HA +V +   LFE+M  ++G +P +
Sbjct: 280 IHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSI 339

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EAE+ IE         +A +WGALL+AC I+G +E+G ++ + 
Sbjct: 340 EHYGCMVDLLGRAGLLKEAEELIENMP---VKPNAAIWGALLNACHIHGNLELGKQIGKI 396

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L ++       ++   +I+  AG   +A +VR+ + E G+ K PGCSVI VNG   EFLA
Sbjct: 397 LIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLA 456

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
           GD  H Q  EI  ++   ++
Sbjct: 457 GDESHPQIKEIDHMLEQIVE 476


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 162/421 (38%), Positives = 247/421 (58%), Gaps = 8/421 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  M   G  PN ++F  L  AC  L   +  G  +H H VK GFG D F +++L++ Y+
Sbjct: 70  YTQMCLQGCSPNEHSFTFLFSACASLSSHQQ-GRMLHTHFVKSGFGCDVFALTALVDMYA 128

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
            +  +  AR  FD+   RDV TW +M+ GY + GD E A ELF  MP RN  SW+A+++ 
Sbjct: 129 KLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISG 188

Query: 138 YSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           Y++   + + LS+F  M +E  M+PNE  L SVL ACA+LGA+  G  +  YA+     K
Sbjct: 189 YAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFK 248

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           N+ ++ A+++MY++CG +  A  VFE I   ++  +WN+MI G+A++G   +++ELF +M
Sbjct: 249 NLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKM 308

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           ++ G  P + TFV VL  CTH  MV +G + FE+M   + + P+LEHY C+VDLL RAG 
Sbjct: 309 LREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGE 368

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           + EA   I   +      D+ VWG LL AC  +G +E+  +    L E+  ++   +V+ 
Sbjct: 369 LREAHDLI---LRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVIL 425

Query: 376 YNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
            NIY  AG WD  A ++RKL+    + K  G S IE  G + +F+  D  H+++ EIY +
Sbjct: 426 SNIYATAGRWDGVA-RLRKLMKGGKITKAAGYSFIEEGGHIHKFIVEDRSHSRSDEIYAL 484

Query: 435 I 435
           +
Sbjct: 485 L 485



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A +LF+ +P+     ++ ++ AYS      +  SL+ QM   G  PNE     + +ACA 
Sbjct: 35  AHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACAS 94

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L +  QG  +H++  +     +V   TA+VDMY+K G +  A   F+ ++ +D   WN+M
Sbjct: 95  LSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSM 154

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A  GD + +LELF  M         T++ A+++           L++F  M     
Sbjct: 155 IAGYARCGDLEGALELFRLMPARNV----TSWTAMISGYAQNGQYAKALSMFLMMEEETE 210

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEK 321
           + P     A V+   A  G +E  E+
Sbjct: 211 MRPNEVTLASVLPACANLGALEVGER 236


>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
 gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
          Length = 530

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 160/425 (37%), Positives = 249/425 (58%), Gaps = 9/425 (2%)

Query: 14  SVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           S+  +L ML  G   PN + +P +++A   +G        +H H  K GF    F+ +SL
Sbjct: 98  SLALFLRMLRRGRPAPNQFVYPLVLRAACAIG--VQLVRSIHCHACKDGFYGHDFIRTSL 155

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           L+ YS    MG AR LFD   DR+VV+WT +V GY + G   +A  LFE+MP+R+  +W+
Sbjct: 156 LDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWN 215

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
           AI+A  ++   F E + +FR+M + G +PN + +  +L+AC HLG +  G  +H YA R 
Sbjct: 216 AIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRS 275

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            +     +   ++DMY KCG++  A  +F+  S++    WN++I+ +A++G ++ ++ +F
Sbjct: 276 CVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVF 335

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
           + M   G QP E TFV +L  CTH   V +GL  FE M   +G+EP++EHY CVVDLL R
Sbjct: 336 NSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCR 395

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
           AG  ++A  FI +        D  +WG+LL+ACRI+  +E+     R L ++  ++ +  
Sbjct: 396 AGRFQDAMNFINDMK---VQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYV 452

Query: 373 VLSYNIYKEAGWDMEANKVRKLISE--TGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGE 430
           V+  N+Y E G+  E  KVRKL+ E  TG KK PGCS IEV+     F +GD+ H ++ +
Sbjct: 453 VMLANLYSEGGFWEEVRKVRKLMKEDVTG-KKLPGCSWIEVDRKTRRFYSGDDGHPESED 511

Query: 431 IYRVI 435
           IY  +
Sbjct: 512 IYDTL 516



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 156/361 (43%), Gaps = 68/361 (18%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDF-----KEVLSLFRQMQEVGMK-PNESGLVSV 169
           AR LF+  P  N   +SA+++AY+  S       ++ L+LF +M   G   PN+     V
Sbjct: 62  ARRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLV 121

Query: 170 L-TACA---------HLGAITQGLWVHSYAK--------RYHL------------EKNVI 199
           L  ACA         H  A   G + H + +        RY +            ++NV+
Sbjct: 122 LRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVV 181

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
             TA+V  Y++ G V  A+ +FE +  +D  AWNA+I+G   NG   +++ +F RMV  G
Sbjct: 182 SWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEG 241

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----------VDL 309
            +P  TT   +L+ C H  M++ G         ++G   +    +CV          +D+
Sbjct: 242 FRPNGTTVSCLLSACGHLGMLKIG-------KVIHGYAWR----SCVGFGSSVVNGLIDM 290

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-D 368
             + G + EA K+I +     G      W +L++   ++G  E    V+  +   G+  D
Sbjct: 291 YGKCGNLMEA-KWIFDAFSDRG---LTTWNSLINCLALHGCSESAIAVFNSMRNEGVQPD 346

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLI-SETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
             T V   N     G+  E  +  +L+  E G++ +     IE  G V + L    R   
Sbjct: 347 EVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPE-----IEHYGCVVDLLCRAGRFQD 401

Query: 428 A 428
           A
Sbjct: 402 A 402



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 40/277 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G  Q      +V  +  M+D GF PN  T   L+ AC  LG L+  G  +H +  + 
Sbjct: 217 IIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLK-IGKVIHGYAWRS 275

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G    VV+ L++ Y     +  A+ +FD   DR + TW ++++     G  E+A    
Sbjct: 276 CVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESA---- 331

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      +++F  M+  G++P+E   V +L AC H G + 
Sbjct: 332 ---------------------------IAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVD 364

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +GL +       + +E  +     VVD+  + G    A++    +    D   W ++++ 
Sbjct: 365 EGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNA 424

Query: 239 VAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTT 273
             ++    + LEL +  +++     P+   +V +L  
Sbjct: 425 CRIH----RHLELAEHAIRNLLDLNPSNANYVVMLAN 457


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/440 (35%), Positives = 255/440 (57%), Gaps = 35/440 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M  GY ++   +  V  + +ML++    +  T   ++ AC  L  LE  G +++ +V + 
Sbjct: 196 MFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLE-LGEWINRYVEEK 254

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +P +++SL                               VD Y K G  + AR LF
Sbjct: 255 GLKGNPTLITSL-------------------------------VDMYAKCGQVDTARRLF 283

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M  R+ V+WSA+++ YS+ S  +E L LF +MQ+  + PNE  +VS+L++CA LGA+ 
Sbjct: 284 DQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALE 343

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH + K+  ++  V L TA++D Y+KCG V S++ VF  +  K+  +W  +I G+A
Sbjct: 344 TGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLA 403

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG  KK+LE F  M++   +P + TF+ VL+ C+HA +V +G +LF +MS  +G+EP++
Sbjct: 404 SNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRI 463

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VD+L RAG++EEA +FI+         +A +W  LL++C+++  +E+G    ++
Sbjct: 464 EHYGCMVDILGRAGLIEEAFQFIKNMP---IQPNAVIWRTLLASCKVHKNVEIGEESLKQ 520

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L  +  T    ++L  NIY   G   +A KVR  + E G+KK PGCS+IE++GV+ EF A
Sbjct: 521 LIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFA 580

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
            DN H+Q+ EIY  I   +K
Sbjct: 581 EDNVHSQSEEIYNAIEDMMK 600



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 150/274 (54%), Gaps = 32/274 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+     P  ++  + +M +   +P+ +TFP ++K C  L  L   G  +HA ++K 
Sbjct: 95  MIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSE-GEQIHALIMKC 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG   FV ++L+  Y+                                 G+ E AR +F
Sbjct: 154 GFGSHGFVKNTLIHMYA-------------------------------NCGEVEVARRVF 182

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M ERN  +W+++ A Y++  +++EV+ LF +M E+ ++ +E  LVSVLTAC  L  + 
Sbjct: 183 DEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLE 242

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W++ Y +   L+ N  L T++VDMY+KCG V +A  +F+ +  +D  AW+AMISG +
Sbjct: 243 LGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYS 302

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
                +++L+LF  M K+   P E T V++L++C
Sbjct: 303 QASRCREALDLFHEMQKANIDPNEITMVSILSSC 336



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 134/293 (45%), Gaps = 38/293 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH++K      P V  +LLE         +A  L   S D  V               
Sbjct: 43  IHAHLIKTRLLLKPKVAENLLE---------SAAILLPTSMDYAV--------------- 78

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                 +F ++ E ++ +++ ++  ++      E + LF++M E  ++P+E     +L  
Sbjct: 79  -----SIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+ L A+++G  +H+   +     +  +   ++ MY+ CG V  A  VF+ +S ++   W
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENM 290
           N+M +G   +G+ ++ ++LF  M++   +  E T V+VLT C     +  G  +N +   
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEE 253

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
             + G  P L     +VD+ A+ G V+ A +  ++    +   D   W A++S
Sbjct: 254 KGLKG-NPTL--ITSLVDMYAKCGQVDTARRLFDQ----MDRRDVVAWSAMIS 299


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 249/440 (56%), Gaps = 35/440 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY ++N P  ++  ++  L+    P++YTFP L+KACV+    +  G  +H   +K 
Sbjct: 98  MFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAKAFQQ-GKQLHCLAIKL 156

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  E+P+V                                 T+++ Y    D + A+ +F
Sbjct: 157 GLNENPYVCP-------------------------------TLINMYAGCNDVDGAQRVF 185

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++ E   VS++AI+  Y+R S   E LSLFRQ+Q   +KPN+  ++SVL++CA LGA+ 
Sbjct: 186 DEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALD 245

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H Y K+  L+K V + TA++DMY+KCG +  A+SVFE +S +D  AW+AMI   A
Sbjct: 246 LGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYA 305

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  +  + +F+ M ++  QP E TF+ +L  C+H  +V +G   F +MS VYG+ P +
Sbjct: 306 MHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGI 365

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG++ EA KFI+E           +W  LLS+C  +G +E+  +V  +
Sbjct: 366 KHYGCMVDLLGRAGLLHEAYKFIDELP---IKPTPILWRTLLSSCSSHGNLELAKQVMNQ 422

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+  +    +V+  N+   AG   + + +RKL+   G  K PGCS IEV+ VV EF +
Sbjct: 423 ILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFS 482

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
           GD  H  +  ++R +   +K
Sbjct: 483 GDGVHYVSTALHRALDELVK 502



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 121/250 (48%), Gaps = 8/250 (3%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A +LFE +P+ + V ++++   YSR +   + +SLF +     + P++    S+L AC  
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             A  QG  +H  A +  L +N  +   +++MY+ C  V  A  VF+ I      ++NA+
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A +    ++L LF ++     +P + T ++VL++C     +  G  + E +    G
Sbjct: 200 ITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKK-NG 258

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++  ++    ++D+ A+ G ++ A    E     +   D   W A++ A  ++G+   G 
Sbjct: 259 LDKYVKVNTALIDMYAKCGSLDGAISVFE----SMSVRDTQAWSAMIVAYAMHGQ---GQ 311

Query: 356 RVWRKLAEMG 365
            V     EM 
Sbjct: 312 DVMSMFEEMA 321


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 166/494 (33%), Positives = 258/494 (52%), Gaps = 67/494 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ Y++  F    +  + +++   + P+N+T P +IK C  LG ++  G  +H   +K 
Sbjct: 84  IIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQE-GKQIHGLALKI 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD------------------------------ 90
           GFG D FV  SL+  YS   ++  AR +FD                              
Sbjct: 142 GFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLF 201

Query: 91  -KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
            + P+RD  +WT +VDG  K G  E+AR+LF++MP RN VSW+A++  Y +  DF   L 
Sbjct: 202 EEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALE 261

Query: 150 LFRQMQ-------------------------------EVGMKPNESGLVSVLTACAHLGA 178
           LF QM                                ++G +P+ + LVSVL+A + L  
Sbjct: 262 LFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAV 321

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + +G W+HSY ++   E + IL T++++MY+KCG + SAL+VF  I  K  G W A+I G
Sbjct: 322 LGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVG 381

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           + ++G A  +L LF  M K+G +P    F+ VL  C HA +V DG   F+ M   Y +EP
Sbjct: 382 LGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEP 441

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            LEHY C+VD+L RAG +EEA+  IE         +  +W +LL   R +GKI++G    
Sbjct: 442 TLEHYGCLVDILCRAGHLEEAKNTIENMP---ISPNKVIWMSLLGGSRNHGKIDIGEYAA 498

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +++ E+       ++L  N+Y  +G   + + VR+++ + G +K PGCS +E  G + EF
Sbjct: 499 QRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEF 558

Query: 419 LAGDNRHAQAGEIY 432
           + GD  H Q  EIY
Sbjct: 559 IVGDISHPQTKEIY 572



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 34/240 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA  +K      PFV S LL  YS               P               K+ D
Sbjct: 32  LHAFSLKTAIFNHPFVSSRLLALYS--------------DP---------------KIND 62

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              AR +F+++  R+ + W+ I+  Y       + + LF ++    + P+   L  V+  
Sbjct: 63  LGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYL-PDNFTLPCVIKG 121

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA LG + +G  +H  A +     +V +  ++V+MYSKCG +  A  VF+G+ +KD   W
Sbjct: 122 CARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLW 181

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N++I G A  G+   +L+LF+ M +     + T  V  L+ C   +  R    LF+ M  
Sbjct: 182 NSLIDGYARCGEIDIALQLFEEMPERDAF-SWTVLVDGLSKCGKVESAR---KLFDQMPC 237


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 179/512 (34%), Positives = 268/512 (52%), Gaps = 73/512 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-------------------- 40
           +IRG    N  + ++  Y +M+  G  P+ YTFP L K+C                    
Sbjct: 59  IIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEGKQIHCHSTKLGFAS 118

Query: 41  ------VILGPLENFGMFVHAHVVKFGFGEDPFVVS--SLLEFYSLVHKMGTARALFDK- 91
                  ++    N G  V A  V F   ED  VVS  +++  ++   +   A  LFD+ 
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKV-FDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRM 177

Query: 92  ------SPD---------------------------------RDVVTWTTMVDGYGKMGD 112
                  P+                                 R VV  T ++D Y K G 
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            + AR+LF+K  E+N  SW+ ++  +   S+++E L LFR+MQ  G+K ++  + S+L A
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C HLGA+  G W+H+Y K+  ++ +V L TA+VDMY+KCG + +A+ VF  +  KD   W
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTW 357

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            A+I G+AM G A+ +L+ FD M   G +P   TFV VL  C+HA  V +G++ F +MS 
Sbjct: 358 TALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSD 417

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
            YG++P +EHY  +VD+L RAG + EAE+ I+         D  V G LL ACRI+G +E
Sbjct: 418 TYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMP---MAPDQFVLGGLLGACRIHGNLE 474

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
              R  ++L E+      T+VL  NIYK +    EA + R+L++E GM+K PGCS IEV+
Sbjct: 475 AAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVH 534

Query: 413 GVVEEFLAGDNRHAQAGEIYRVIHSFL-KMSN 443
           GVV EF+ GD+ H Q+ EI  ++   + K+ N
Sbjct: 535 GVVHEFVKGDSSHRQSSEINEMLEDMISKLKN 566


>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
          Length = 522

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 237/423 (56%), Gaps = 7/423 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR       P  +V  ++DML     P+  +FP L+ A   LG   + G  +H   +K 
Sbjct: 104 VIRALSDGARPDAAVALFVDMLSSPTPPDRRSFPSLLAAYARLGRAGD-GEALHGMALKL 162

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V ++ +  Y+   +   A ALF + P+ DVV   +++    + G  + AR +F
Sbjct: 163 GLAGDAYVRNATIAMYASCGRADEALALFGQCPELDVVACNSVIVALARAGRVDEARSVF 222

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPER   +WSA+++AY+R +   E L+LF  MQ  GM+PN + LVSVL  CA LGA+ 
Sbjct: 223 DAMPERTVATWSAMVSAYARAARCSEALALFSAMQADGMEPNANVLVSVLGCCASLGALV 282

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMIS 237
           QG WVH Y  R+ +  N ++ TA+VDMY KCG V  A  VF+   ++      +WN+M+ 
Sbjct: 283 QGAWVHEYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQ 342

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+A++G  ++++ LF  +   G  P   TF+AVLT   H+ M  +    F +MS+ +GVE
Sbjct: 343 GLAVHGQWREAVALFSELKSYGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMSSEHGVE 402

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P +EHY C+VD LARAG + EAE  I          DA +WGALLS CR++G  E+G R 
Sbjct: 403 PGIEHYGCLVDALARAGRLREAEDAIRAMP---MAPDAAIWGALLSGCRLHGDAELGARA 459

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            R+       D   +VL+ ++    G       +R  + E G+ K PG S+IEVNGVV E
Sbjct: 460 AREAVRCDPRDSGAYVLAASVLARGGDPGRGAGIRGRMREAGVGKVPGSSMIEVNGVVHE 519

Query: 418 FLA 420
           F++
Sbjct: 520 FVS 522



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 160/430 (37%), Gaps = 76/430 (17%)

Query: 40  CVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVT 99
           CV +  L       HA +VK G  +DP   S  + F +               P RDV+ 
Sbjct: 44  CVSMAHLRQL----HAALVKSGLAKDPIAASRAVAFCA--------------GPGRDVLY 85

Query: 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
                           A  L    P  N+  W+ ++ A S  +     ++LF  M     
Sbjct: 86  ----------------AERLVRHHPRPNSFMWNTVIRALSDGARPDAAVALFVDMLSSPT 129

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL- 218
            P+     S+L A A LG    G  +H  A +  L  +  +  A + MY+ CG    AL 
Sbjct: 130 PPDRRSFPSLLAAYARLGRAGDGEALHGMALKLGLAGDAYVRNATIAMYASCGRADEALA 189

Query: 219 ------------------------------SVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
                                         SVF+ +  +    W+AM+S  A      ++
Sbjct: 190 LFGQCPELDVVACNSVIVALARAGRVDEARSVFDAMPERTVATWSAMVSAYARAARCSEA 249

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           L LF  M   G +P     V+VL  C     +  G  + E +   +GV         +VD
Sbjct: 250 LALFSAMQADGMEPNANVLVSVLGCCASLGALVQGAWVHEYIDR-HGVAMNALVVTALVD 308

Query: 309 LLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           +  + G V++A + F   +  GL     + W +++    ++G+      ++ +L   G++
Sbjct: 309 MYCKCGSVDDARQVFDAARSQGL--AKLSSWNSMMQGLAVHGQWREAVALFSELKSYGLS 366

Query: 368 -DFSTHVLSYNIYKEAGWDMEANKV-RKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
            D  T +     Y  +G   EA      + SE G+  +PG   IE  G + + LA   R 
Sbjct: 367 PDNVTFIAVLTAYGHSGMPDEAQAAFASMSSEHGV--EPG---IEHYGCLVDALARAGRL 421

Query: 426 AQAGEIYRVI 435
            +A +  R +
Sbjct: 422 REAEDAIRAM 431


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  301 bits (770), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 168/439 (38%), Positives = 253/439 (57%), Gaps = 33/439 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC---VILGPLENFGMFVHAHV 57
           +IR +++ + P L+   + +M D G   +N+T+P L+KAC   V +  +E     +HA V
Sbjct: 86  LIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVE----MIHAQV 141

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
            K GF  D FV +SL++ Y  + ++G AR LFD+ P+RD V+W T++DGY K G+   A 
Sbjct: 142 EKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAF 201

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ELFEKMP RN VSWS +                     E G+K ++  ++S+L+ACA  G
Sbjct: 202 ELFEKMPARNVVSWSTM---------------------EAGLKFDDGTVISILSACAVSG 240

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH+  +R   + +  ++ A++DMY+KCG + +ALS+F G+  KD  +WNA+I 
Sbjct: 241 LLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQ 300

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+AM+G  +K+L+LF RM   G  P + TFV VL  CTHA  V +GL+ F  M   YGV 
Sbjct: 301 GLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVP 360

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY C+VDLL R G ++EA + +          +A +WG LL ACR++    +   V
Sbjct: 361 PEVEHYGCMVDLLGRGGRLKEAFRLVHSMP---LEPNAIIWGTLLGACRMHSATGLAEEV 417

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
           + +L +  ++D     +  NIY  AG WD  AN +R  +  T ++K  G S IEV+  V 
Sbjct: 418 FDRLVKSELSDSGNLSMLSNIYAAAGDWDNFAN-IRLRMKSTSIQKPSGGSSIEVDDEVH 476

Query: 417 EFLAGDNRHAQAGEIYRVI 435
           EF   D  H ++  IY+ I
Sbjct: 477 EFTVFDRSHPKSDRIYKTI 495



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/330 (18%), Positives = 138/330 (41%), Gaps = 60/330 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA V+K     + FV   L+  +SL  +M  A  +F++  D DV+ + T++        
Sbjct: 36  IHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLI-------- 87

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                   A+ R S+     S+F +MQ+ G+  +      +L A
Sbjct: 88  -----------------------RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKA 124

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+    +     +H+  ++     ++ +  +++D Y K G +  A  +F+ +  +D  +W
Sbjct: 125 CSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSW 184

Query: 233 NAMISGVAMNGDAKKSLELFDRM----------VKSGTQPTETTFVAVLTTCTHAKMVRD 282
           N ++ G    G+   + ELF++M          +++G +  + T +++L+ C  + ++  
Sbjct: 185 NTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGL 244

Query: 283 GLNLFENMSAVYGVEPQLEHYAC-------VVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           G  +  ++        +   + C       ++D+ A+ G +E A         G+   D 
Sbjct: 245 GKRVHASI--------ERTRFKCSTPVSNALIDMYAKCGSLENALSIFH----GMVRKDV 292

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
             W A++    ++G  E   +++ ++   G
Sbjct: 293 VSWNAIIQGLAMHGHGEKALQLFSRMKGEG 322



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/214 (18%), Positives = 82/214 (38%), Gaps = 26/214 (12%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           +S L  C+ L  + Q   +H+   + +L +   +   ++  +S C  +  A++VF  I +
Sbjct: 21  ISDLHRCSSLNQVKQ---IHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQD 77

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            D   +N +I     N +   +  +F  M  SG      T+  +L  C+    VR     
Sbjct: 78  PDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVR----- 132

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVE---------EAEKFIEEKMGGLGGGDANV 337
                 V  +  Q+E     +D+     +++         EA +  +E    +   D   
Sbjct: 133 -----VVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLFDE----MPERDTVS 183

Query: 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           W  +L      G++     ++ K+    +  +ST
Sbjct: 184 WNTILDGYVKAGEMNAAFELFEKMPARNVVSWST 217


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  300 bits (769), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 257/439 (58%), Gaps = 9/439 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE---PNNYTFPPLIKACVILGPL-ENFGMFVHAH 56
           +IR Y        ++  ++ ML        P+ +TFP +IK+C   G L    GM VH  
Sbjct: 79  IIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCT--GILCHRLGMQVHGL 136

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           V KFG        ++L++ Y+    +  A  +F++   RDV++W +++ GY K+G   +A
Sbjct: 137 VYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSA 196

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           RELF+ MP R  VSW+ ++  Y R+  + + L +FR+MQ VG++P+E  +++VL ACA L
Sbjct: 197 RELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQL 256

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G W+H YA +    +   +  A+++MY+KCG +  A ++F+ +  KD  +W+ MI
Sbjct: 257 GALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMI 316

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G+A +G   ++++LF+ M K    P E TF+ VL  C+H  +  +GL  F+ MSA Y +
Sbjct: 317 GGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHI 376

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           EP++EHY C++DLL R+G + +A   I  KM      D+ +W +LLS+CRI+  +++   
Sbjct: 377 EPEIEHYGCLIDLLGRSGCLGQALDTI-SKMP--IKPDSRIWNSLLSSCRIHRNLQIAVI 433

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             ++L E+   +   +VL  N+Y E G   + + +RKLI    +KK PG S IEVN VV+
Sbjct: 434 AVKQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQ 493

Query: 417 EFLAGDNRHAQAGEIYRVI 435
           EF++ D+    + E++ ++
Sbjct: 494 EFVSSDDSKPFSQEVFWIL 512



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 138/329 (41%), Gaps = 49/329 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAHVVK    +  F+V                               T M+D    +G 
Sbjct: 29  IHAHVVKLSLSQSNFLV-------------------------------TKMLDSCDNLGH 57

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSV 169
              A  LF+++   N  +++AI+  Y+        +S+F QM       + P++     V
Sbjct: 58  VSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFV 117

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           + +C  +     G+ VH    ++  + + I   A++DMY+K G + +A  VFE +S++D 
Sbjct: 118 IKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDV 177

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET--TFVAVLTTCTHAKMVRDGLNLF 287
            +WN++I G    G    + ELFD M      P  T  ++  ++T         D L++F
Sbjct: 178 ISWNSLIFGYVKLGQMNSARELFDDM------PVRTIVSWTTMITGYGRMGCYGDALDVF 231

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE--KFIEEKMGGL-GGGDANVWGALLSA 344
             M  V G+EP       V+   A+ G +E  +      +K G L   G  N    + + 
Sbjct: 232 REMQMV-GIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAK 290

Query: 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           C   G I+    ++ +L E  +  +ST +
Sbjct: 291 C---GCIDEAWNLFDQLVEKDVISWSTMI 316



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 11/226 (4%)

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M  + ++  E+  ++ L  C     ITQ   +H++  +  L ++  L T ++D     GH
Sbjct: 1   MATIFIRELENRYITSLKNCF---KITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGH 57

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ---PTETTFVAV 270
           V  A  +F+ + + +   +NA+I   A N     ++ +F +M+   T    P + TF  V
Sbjct: 58  VSYATLLFKQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFV 117

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330
           + +CT     R G+ +   +   +G +        ++D+  + G +  A K  EE    +
Sbjct: 118 IKSCTGILCHRLGMQV-HGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEE----M 172

Query: 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
              D   W +L+      G++     ++  +    I  ++T +  Y
Sbjct: 173 SHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGY 218


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 169/467 (36%), Positives = 255/467 (54%), Gaps = 36/467 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+++A  P+ ++  Y  M   G E N +TF  ++KA   L P    G  VH  +VK 
Sbjct: 97  MIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKA-YGLRPSYQEGRIVHGKLVKV 155

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F  ++L+  Y     +  A  LFD+ P+ +VVTW TM+ G    GD E AR LF
Sbjct: 156 GFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLF 215

Query: 121 EKMPERNAVSWSAIMAAYSRISDFK-------------------------------EVLS 149
            +MPERN  SW+A++  YS++                                   E L 
Sbjct: 216 GEMPERNVGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALE 275

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LF++M   G+  +   + S+L+ACA +GA+  G W+H+Y KR  L  +V L TA+VDMY+
Sbjct: 276 LFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYA 335

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG + +A  VF  +  K+  +WNAM+SG+A++G    +LELF +M  +G  P + TFVA
Sbjct: 336 KCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVA 395

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VL+ C+H   V +G   F  M   + + P++EHY C+VD+L R G++ EA++ I      
Sbjct: 396 VLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMP-- 453

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN 389
               +  +WGALL+AC+++G   VG  V   + ++   D   +VL  NI+       E  
Sbjct: 454 -LEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVE 512

Query: 390 KVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           K RK++ + G++KK PG S IE++ VV +F A D  H++  E+  VI
Sbjct: 513 KTRKMMKQMGVEKKIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVI 559



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 134/327 (40%), Gaps = 45/327 (13%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL-VHKMGTARA 87
           +NY     +++C     L+     +HA ++  G  +D F+ +  +E Y++    +  A  
Sbjct: 26  SNYKTLSALQSCKSTEDLKK----IHAQLIITGQIKDTFIATKTVESYAVSARNIDYAFW 81

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           +F      D  +WTTM+ G+ +            K PE+                     
Sbjct: 82  VFVGINYPDSYSWTTMIRGFVE-----------AKNPEK--------------------A 110

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L  +  M++ G++ N+   + VL A     +  +G  VH    +     +V    A++ M
Sbjct: 111 LEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHM 170

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y KCG +  A  +F+ + N +   WN MI+G    GD +++  LF  M +     +    
Sbjct: 171 YLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVG-SWNAV 229

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V   +   H  + R   +LF+ M      E  +  +  ++    + G   EA +  +E M
Sbjct: 230 VGGYSKLGHVDIAR---SLFDLMP-----ERDVVSWGSMISAYVQNGRAAEALELFKEMM 281

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVG 354
                 D+ +  ++LSAC   G +++G
Sbjct: 282 LAGVSADSIIITSILSACAQIGALDMG 308


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  300 bits (768), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 159/422 (37%), Positives = 248/422 (58%), Gaps = 8/422 (1%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           +++FC   M+      +NY    ++KACV+   L + G  VH  V+K G G D  +   L
Sbjct: 110 INLFC--QMVRKHVLADNYAVTAMLKACVLQRALGS-GKEVHGLVLKSGLGLDRSIALKL 166

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           +E Y     +  AR +FD  P+RDVV  T M+      G  E A E+F +M  R+ V W+
Sbjct: 167 VELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWT 226

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
            ++    R  +F   L +FR+MQ  G++PNE   V VL+ACA LGA+  G W+H+Y ++ 
Sbjct: 227 MVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKC 286

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            +E N  +A A+++MYS+CG +  A ++F+G+  KD   +N+MI G+A++G + +++ELF
Sbjct: 287 GVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELF 346

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
             M+K   +P   TFV VL  C+H  +V  G  +FE+M  ++G+EP++EHY C+VD+L R
Sbjct: 347 SEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGR 406

Query: 313 AGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
            G +EEA  FI    G +G   D  +  +LLSAC+I+  I +G +V + L+E    D  +
Sbjct: 407 VGRLEEAFDFI----GRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGS 462

Query: 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
            ++  N Y   G    A +VR+ + + G+ K+PGCS IEVN  + EF +GD RH +   I
Sbjct: 463 FIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRI 522

Query: 432 YR 433
           Y+
Sbjct: 523 YK 524



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 11/301 (3%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H H +K    +DPFV   LL  Y  V+ +  A  LF  + + +V  +T+++DG+   G 
Sbjct: 46  IHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGS 105

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           + +A  LF +M  ++ ++ +  + A  +    +  L   +++  + +K   SGL    + 
Sbjct: 106 YTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVLK---SGLGLDRSI 162

Query: 173 CAHLGAITQGLWVHSYAKRYH---LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
              L  +     V   A++      E++V+  T ++     CG V  A+ VF  +  +D 
Sbjct: 163 ALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDT 222

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
             W  +I G+  NG+  + LE+F  M   G +P E TFV VL+ C     +  G  +   
Sbjct: 223 VCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAY 282

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M    GVE        ++++ +R G ++EA+   +    G+   D + + +++    ++G
Sbjct: 283 MRKC-GVEVNRFVAGALINMYSRCGDIDEAQALFD----GVRVKDVSTYNSMIGGLALHG 337

Query: 350 K 350
           K
Sbjct: 338 K 338


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  300 bits (768), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 164/413 (39%), Positives = 238/413 (57%), Gaps = 8/413 (1%)

Query: 23  DMGFEPNNYTFPPLIKACVI-LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81
           D+G  PN Y+F     AC   LG  E  G  V  H VK G   + FVV++L+  Y     
Sbjct: 108 DLGLFPNRYSFVFAFSACGNGLGVQE--GEQVRIHAVKVGLENNVFVVNALIGMYGKWGL 165

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +G ++ +F  + DRD+ +W T++  Y   G+   A+ELF+ M ER+ VSWS I+A Y ++
Sbjct: 166 VGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQV 225

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
             F E L  F +M ++G KPNE  LVS L AC++L A+ QG W+H+Y  +  ++ N  L 
Sbjct: 226 GCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLL 285

Query: 202 TAVVDMYSKCGHVHSALSV-FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            +++DMY+KCG + SA  V FE    +    WNAMI G AM+G   +++ +F++M     
Sbjct: 286 ASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKI 345

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P + TF+A+L  C+H  MV +G   F  M + Y + P++EHY C+VDLL+R+G+++EAE
Sbjct: 346 SPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAE 405

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
             I          D  +WGALL+ACRIY  +E G R+ R +  M       HVL  NIY 
Sbjct: 406 DMISSMP---MAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPNHIGCHVLLSNIYS 462

Query: 381 EAGWDMEANKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
            +G   EA  +R+    +  +KK PGCS IE+ G   +FL GD  H Q+ EIY
Sbjct: 463 TSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHPQSREIY 515



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 122/270 (45%), Gaps = 43/270 (15%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYS-RISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTAC 173
           A +LF+++P+ +   ++ ++ A+S         L +FR + Q++G+ PN    V   +AC
Sbjct: 66  AHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSAC 125

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            +   + +G  V  +A +  LE NV +  A++ MY K G V  +  VF+   ++D  +WN
Sbjct: 126 GNGLGVQEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWN 185

Query: 234 AMISGVAMNGDAKKSLELFD-------------------------------RMVKSGTQP 262
            +I+    +G+   + ELFD                               +M++ G +P
Sbjct: 186 TLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKP 245

Query: 263 TETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            E T V+ L  C++   +  G  ++ +     +   E  L   A ++D+ A+ G +E A 
Sbjct: 246 NEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLL---ASIIDMYAKCGEIESAS 302

Query: 321 K-FIEEKMGGLGGGDANVWGALLSACRIYG 349
           + F E K+         +W A++    ++G
Sbjct: 303 RVFFEHKV----KQKVWLWNAMIGGFAMHG 328



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 115/266 (43%), Gaps = 37/266 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q      ++  +  ML +G +PN YT    + AC  L  L+  G ++HA++ K 
Sbjct: 218 IIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQ-GKWIHAYIGKG 276

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTA-RALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
               +  +++S+++ Y+   ++ +A R  F+    + V  W  M+ G+   G        
Sbjct: 277 EIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHG-------- 328

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
              MP                     E +++F QM+   + PN+   +++L AC+H   +
Sbjct: 329 ---MP--------------------NEAINVFEQMKVEKISPNKVTFIALLNACSHGYMV 365

Query: 180 TQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G L+       Y +   +     +VD+ S+ G +  A  +   +    D   W A+++
Sbjct: 366 EEGKLYFRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLN 425

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPT 263
              +  D ++   +  R++K G  P 
Sbjct: 426 ACRIYKDMERGYRI-GRIIK-GMDPN 449


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  300 bits (768), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 256/437 (58%), Gaps = 10/437 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK- 59
           MI+GY + N P+ ++  + +M + G  P+ +TF  L   C +L    N G  +HA V K 
Sbjct: 183 MIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNE-PNVGKQIHAQVYKN 241

Query: 60  -FGFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENAR 117
                 +  + S++++ Y+    +  A  +F      +    W++MV GY + G+   AR
Sbjct: 242 LRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVAR 301

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF  M ER+ +SW+A+++ YS+     E L LF++M+ +G+KP+E  LV+VL+ACA LG
Sbjct: 302 KLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLG 361

Query: 178 AITQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE--GISNKDAGAWNA 234
           A   G  + H Y +     +N IL  AV+DMY+KCG + SAL +F   G + K    +N+
Sbjct: 362 AFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNS 421

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI+G+A +G  + ++ +F  ++ +G +P E TFV VL  C H+ ++ +G  LFE+M   Y
Sbjct: 422 MIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAY 481

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G++PQ+EHY C+VDLL R G +EEA   + +KM      ++ +W ALLSACR +G +++G
Sbjct: 482 GIKPQMEHYGCMVDLLGRYGCLEEAYDLV-QKMP--FEANSVIWRALLSACRTHGNVKIG 538

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
               +KL EM     + +VL  NI  +A    EA +VRK++ + G++K PG S IE+ G 
Sbjct: 539 EIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGA 598

Query: 415 VEEFLAGDNRHAQAGEI 431
           +  F+A D  H Q  EI
Sbjct: 599 IHRFVASDKSHPQGKEI 615



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 187/403 (46%), Gaps = 73/403 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIRGY +++ P+ ++  Y+ M+  G   PNN+TFP L+ +C  L  LE  G  VH+H++K
Sbjct: 81  MIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEP-GHEVHSHIIK 139

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  D FV ++L+  YS+   +  AR LFD+S  RD+V++ TM+ GY ++   E+A   
Sbjct: 140 HGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA--- 196

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                       L LF +MQ  G+ P+E   V++ + C+ L   
Sbjct: 197 ----------------------------LCLFGEMQNSGILPDEFTFVALFSVCSVLNEP 228

Query: 180 TQGLWVHS--YAKRYHLEKNVILATAVVDMYSK--------------------------- 210
             G  +H+  Y     ++ N++L +A+VDMY+K                           
Sbjct: 229 NVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMV 288

Query: 211 -----CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
                CG ++ A  +F  +  +D  +W AMISG +  G   ++LELF  M   G +P E 
Sbjct: 289 CGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEV 348

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENM--SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           T VAVL+ C        G  L+     + V+     L   A V+D+ A+ G ++ A +  
Sbjct: 349 TLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILT--AAVMDMYAKCGSIDSALEIF 406

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
                 +  G   V+ ++++    +G  E    V+R+L   G+
Sbjct: 407 RRVGKNMKTG--FVFNSMIAGLAQHGLGETAITVFRELISTGL 447



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 166/358 (46%), Gaps = 44/358 (12%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G+ +HA  +  G     F +S L+ F+SL+                            G 
Sbjct: 25  GLQIHAQTIVNGLHHQIFSISRLISFFSLL----------------------------GS 56

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVS 168
               +++R LF ++   N   W+ ++  YSR  + +E + L+  M   G+  PN      
Sbjct: 57  KDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPF 116

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +L +CA L ++  G  VHS+  ++  E ++ +  A++ +YS  G+++ A ++F+    +D
Sbjct: 117 LLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRD 176

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             ++N MI G A     + +L LF  M  SG  P E TFVA+ + C+    V +  N+ +
Sbjct: 177 LVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCS----VLNEPNVGK 232

Query: 289 NMSA-VY----GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
            + A VY     ++  +   + +VD+ A+ G++  AE+ +   MG      A  W +++ 
Sbjct: 233 QIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAER-VFSTMG--TSKSAAAWSSMVC 289

Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
                G+I V  +++  + E  +  ++  +  Y+   +AG   EA ++ K +   G+K
Sbjct: 290 GYARCGEINVARKLFNHMHERDVISWTAMISGYS---QAGQCSEALELFKEMEALGIK 344


>gi|357466867|ref|XP_003603718.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355492766|gb|AES73969.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 629

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/428 (39%), Positives = 250/428 (58%), Gaps = 14/428 (3%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           LSVF    ML+M   PN++TF  L+K+CV L  LE     V    +K G   D + VSS+
Sbjct: 109 LSVFT--KMLNMNIRPNSHTFTTLVKSCVTLSSLEQ----VFTLTMKSGNSSDVYFVSSV 162

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           +  +S    +  AR +FD+S +R+VV WT++V GY   G     R++F+KMP+RN  S S
Sbjct: 163 INVFSKHGAIHLARQVFDESSNRNVVCWTSLVSGYCSCGLVNEVRDVFDKMPQRNEASNS 222

Query: 133 AIMAAYSRISDFKEVLSLFRQMQE-----VGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           A+++ Y R S F E + LFR++++       +K N + LVSVL AC  +GA  +G W+HS
Sbjct: 223 AMVSGYVRNSFFSEGVQLFRELKKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHS 282

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           Y +   LE ++ L TA++D Y+KCG V  A  VF+ +  KD   W+AMI G+A+NG+ K 
Sbjct: 283 YVEENGLEYDLELGTALIDFYAKCGWVKDAEKVFDKMLVKDVATWSAMILGLAINGNNKM 342

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           +LELF++M K G +P E TFV VLT C H  +  +   LF  MS  Y + P +EHY C+V
Sbjct: 343 ALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESSRLFGIMSEKYNITPSIEHYGCIV 402

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           D+LAR+G V++A  FI          D  +WG+LL+ C ++G  E+G +V + L E    
Sbjct: 403 DILARSGQVKKALIFINSMH---IEPDGAIWGSLLNGCLMHGHYELGQKVGKYLIEFDPE 459

Query: 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
               +VL  N+Y   G     ++VRKL+ + G+    G S IE++  + +F A D     
Sbjct: 460 HSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVVIVYGWSFIEIDQTLHKFSADDKCCLY 519

Query: 428 AGEIYRVI 435
           +GEIY V+
Sbjct: 520 SGEIYEVL 527



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 65/294 (22%), Positives = 128/294 (43%), Gaps = 50/294 (17%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GDF  A  LF  MP  N   +++I+ +Y+  S F + LS+F +M  + ++PN     +++
Sbjct: 72  GDFRYAETLFTHMPNPNIFDYNSIITSYTTNSQFDKSLSVFTKMLNMNIRPNSHTFTTLV 131

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            +C  L ++ Q   V +   +     +V   ++V++++SK G +H A  VF+  SN++  
Sbjct: 132 KSCVTLSSLEQ---VFTLTMKSGNSSDVYFVSSVINVFSKHGAIHLARQVFDESSNRNVV 188

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            W +++SG    G   +  ++FD+M     Q  E +  A+++         +G+ LF  +
Sbjct: 189 CWTSLVSGYCSCGLVNEVRDVFDKM----PQRNEASNSAMVSGYVRNSFFSEGVQLFREL 244

Query: 291 SAV---------------------------------------YGVEPQLEHYACVVDLLA 311
                                                      G+E  LE    ++D  A
Sbjct: 245 KKKDKGRARVKFNGALLVSVLNACTVMGAFEEGKWIHSYVEENGLEYDLELGTALIDFYA 304

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           + G V++AEK  ++ +      D   W A++    I G  ++   ++ K+ ++G
Sbjct: 305 KCGWVKDAEKVFDKML----VKDVATWSAMILGLAINGNNKMALELFEKMEKVG 354


>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
          Length = 748

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/425 (37%), Positives = 249/425 (58%), Gaps = 9/425 (2%)

Query: 14  SVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           S+  +L ML  G   PN + +P +++A   +G        +H H  K GF    F+ +SL
Sbjct: 316 SLALFLRMLRRGRPAPNQFVYPLVLRAACAIG--VQLVRSIHCHACKDGFYGHDFIRTSL 373

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           L+ YS    MG AR LFD   DR+VV+WT +V GY + G   +A  LFE+MP+R+  +W+
Sbjct: 374 LDGYSRYGMMGDARKLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWN 433

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
           AI+A  ++   F E + +FR+M + G +PN + +  +L+AC HLG +  G  +H YA R 
Sbjct: 434 AIIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAWRS 493

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            +     +   ++DMY KCG++  A  +F+  S++    WN++I+ +A++G ++ ++ +F
Sbjct: 494 CVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESAIAVF 553

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
           + M   G QP E TFV +L  CTH   V +GL  FE M   +G+EP++EHY CVVDLL R
Sbjct: 554 NSMRNEGVQPDEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCR 613

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
           AG  ++A  FI +        D  +WG+LL+ACRI+  +E+     R L ++  ++ +  
Sbjct: 614 AGRFQDAMNFINDMK---VQPDEVIWGSLLNACRIHRHLELAEHAIRNLLDLNPSNANYV 670

Query: 373 VLSYNIYKEAGWDMEANKVRKLISE--TGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGE 430
           V+  N+Y E G+  E  KVRKL+ E  TG KK PGCS IEV+     F +GD+ H ++ +
Sbjct: 671 VMLANLYSEGGFWEEVRKVRKLMKEDVTG-KKLPGCSWIEVDRKTRRFYSGDDGHPESED 729

Query: 431 IYRVI 435
           IY  +
Sbjct: 730 IYDTL 734



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 40/277 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G  Q      +V  +  M+D GF PN  T   L+ AC  LG L+  G  +H +  + 
Sbjct: 435 IIAGCTQNGLFVEAVGIFRRMVDEGFRPNGTTVSCLLSACGHLGMLK-IGKVIHGYAWRS 493

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G    VV+ L++ Y     +  A+ +FD   DR + TW ++++     G  E+A    
Sbjct: 494 CVGFGSSVVNGLIDMYGKCGNLMEAKWIFDAFSDRGLTTWNSLINCLALHGCSESA---- 549

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      +++F  M+  G++P+E   V +L AC H G + 
Sbjct: 550 ---------------------------IAVFNSMRNEGVQPDEVTFVGLLNACTHGGFVD 582

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +GL +       + +E  +     VVD+  + G    A++    +    D   W ++++ 
Sbjct: 583 EGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNFINDMKVQPDEVIWGSLLNA 642

Query: 239 VAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTT 273
             ++    + LEL +  +++     P+   +V +L  
Sbjct: 643 CRIH----RHLELAEHAIRNLLDLNPSNANYVVMLAN 675



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 36/204 (17%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDF-----KEVLSLFRQMQEVGMK-PNESGLVSV 169
           AR LF+  P  N   +SA+++AY+  S       ++ L+LF +M   G   PN+     V
Sbjct: 280 ARRLFDATPSPNVFLYSAMLSAYAAASSHSQEHARDSLALFLRMLRRGRPAPNQFVYPLV 339

Query: 170 L-TACA---------HLGAITQGLWVHSYAK--------RYHL------------EKNVI 199
           L  ACA         H  A   G + H + +        RY +            ++NV+
Sbjct: 340 LRAACAIGVQLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDARKLFDGLTDRNVV 399

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
             TA+V  Y++ G V  A+ +FE +  +D  AWNA+I+G   NG   +++ +F RMV  G
Sbjct: 400 SWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVEAVGIFRRMVDEG 459

Query: 260 TQPTETTFVAVLTTCTHAKMVRDG 283
            +P  TT   +L+ C H  M++ G
Sbjct: 460 FRPNGTTVSCLLSACGHLGMLKIG 483


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/383 (41%), Positives = 227/383 (59%), Gaps = 3/383 (0%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA   + G   DP V S  +  Y+ V  +G  RA F +    DVV  T M+      GD
Sbjct: 146 VHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVSPDVVCVTAMLGALSAGGD 205

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            + ARELF+ MP+R+ V+W+A++  Y R+   +E L LF +MQ+ G+  +E  LVSVLTA
Sbjct: 206 VDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTA 265

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA +GA+ +G+WVHSY     +  +V L TA+VDMYSKCG V  ++ VFE +  ++   W
Sbjct: 266 CAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTW 325

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            + +SG+AMNG  ++ LELF RM  +G +P   TFVAVL  C+ A +V +G   F++M  
Sbjct: 326 TSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKD 385

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
            + VEP LEHY C+VDL  RAG +++A  FI         G   VWGALL+A RI+  ++
Sbjct: 386 KHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEG---VWGALLNASRIHNNVD 442

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           +G     KL E+   + + HVL  NIY E+      +KVR ++   G+KK PGCS IEV+
Sbjct: 443 LGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMKSKGVKKMPGCSAIEVD 502

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
           G V EF  G   H +  +I  ++
Sbjct: 503 GKVHEFFVGSKSHPRYKDIQTML 525



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 101/240 (42%), Gaps = 34/240 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY++    + ++  + +M   G   +  T   ++ AC  +G LE  GM+VH++V   
Sbjct: 227 MLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALER-GMWVHSYVCSR 285

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ YS    +  +  +F+   +R++ TWT+ + G    G  E   EL 
Sbjct: 286 GMRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLEL- 344

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                         F++M+  GM+PN    V+VL  C+  G + 
Sbjct: 345 ------------------------------FKRMESAGMEPNGVTFVAVLRGCSVAGLVE 374

Query: 181 QGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G       K  H +E  +     +VD+Y + G +  A+     +      G W A+++ 
Sbjct: 375 EGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEGVWGALLNA 434


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 246/436 (56%), Gaps = 37/436 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q    K ++  + DM      PN  T   ++ AC     L+  G  + + +   
Sbjct: 232 MIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALD-LGNSMRSWIEDR 290

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  +V++L++ YS                               K GD + ARELF
Sbjct: 291 GLCSNLKLVNALIDMYS-------------------------------KCGDLQTARELF 319

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M ER+ +SW+ ++  Y+ +  +KE L+LFR+M   G++P E   +S+L +CAHLGAI 
Sbjct: 320 DDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAID 379

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H+Y  +     +  L+T+++D+Y+KCG++ +A  VF+G+  K   +WNAMI G+A
Sbjct: 380 LGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLA 439

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A K+ ELF +M   G +P E TFV +L+ C HA +V  G   F +M   Y + P+ 
Sbjct: 440 MHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKS 499

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C++DLL RAG+ EEAE  ++       G    +WG+LL ACR +G++E+G  V  +
Sbjct: 500 QHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGA---IWGSLLGACRDHGRVELGELVAER 556

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +VL  NIY  AG WD +  ++R  +++ GMKK PGC+ IEV+ VV EFL
Sbjct: 557 LFELEPDNPGAYVLLSNIYAGAGKWD-DVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFL 615

Query: 420 AGDNRHAQAGEIYRVI 435
            GD  H Q+ +IYR++
Sbjct: 616 VGDKVHPQSEDIYRML 631



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/366 (33%), Positives = 208/366 (56%), Gaps = 6/366 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG   +  P L++  ++ M+  G EPN+YTFP L+K+C  L      G  +HAHV+K 
Sbjct: 100 MIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHE-GKQIHAHVLKL 158

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F+ +SL+  Y+   +M  A+ +FD+S  RD +++T ++ GY   G  + AR+LF
Sbjct: 159 GFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLF 218

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP ++ VSW+A++A Y+++   KE L LF  M++  + PNES +VSVL+ACA   A+ 
Sbjct: 219 DEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALD 278

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  + S+ +   L  N+ L  A++DMYSKCG + +A  +F+ +  +D  +WN MI G  
Sbjct: 279 LGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYT 338

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
                K++L LF  M+ SG +PTE TF+++L +C H   +  G  +   ++  +      
Sbjct: 339 HMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTS 398

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
              + ++DL A+ G +  A +  +    G+       W A++    ++G+ +    ++ K
Sbjct: 399 LSTS-LIDLYAKCGNIVAARQVFD----GMKIKSLASWNAMICGLAMHGQADKAFELFSK 453

Query: 361 LAEMGI 366
           ++  GI
Sbjct: 454 MSSDGI 459



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 132/306 (43%), Gaps = 61/306 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH++K G     F +S L+EF ++                              + GD
Sbjct: 48  IHAHIIKTGLHNTLFALSKLIEFSAV-----------------------------SRSGD 78

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  LF  + E N   W++++   S        L  F +M   G++PN      +L +
Sbjct: 79  ISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKS 138

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG--------- 223
           CA L +  +G  +H++  +     +V + T++++MY++ G +++A  VF+          
Sbjct: 139 CAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISF 198

Query: 224 ----------------------ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                                 +  KD  +WNAMI+G A  G +K++L LF+ M K+   
Sbjct: 199 TALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVP 258

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E+T V+VL+ C  +  +  G N   +     G+   L+    ++D+ ++ G ++ A +
Sbjct: 259 PNESTIVSVLSACAQSNALDLG-NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 322 FIEEKM 327
             ++ +
Sbjct: 318 LFDDML 323



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 21/228 (9%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM--YSKCGHVHSALSVFEGI 224
           + +L+ C  +    Q   +H++  +  L   +   + +++    S+ G +  A+S+F  I
Sbjct: 33  LKLLSKCQSIRTFKQ---IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSI 89

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
              +   WN+MI G++M+     +L  F RM+ SG +P   TF  +L +C       +G 
Sbjct: 90  EEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGK 149

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +  ++  +  V     H + ++++ A++G +  A+   ++        DA  + AL++ 
Sbjct: 150 QIHAHVLKLGFVSDVFIHTS-LINMYAQSGEMNNAQLVFDQS----NFRDAISFTALIAG 204

Query: 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI----YKEAGWDMEA 388
             ++G ++   R  +   EM + D    V+S+N     Y + G   EA
Sbjct: 205 YALWGYMD---RARQLFDEMPVKD----VVSWNAMIAGYAQMGRSKEA 245


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/444 (36%), Positives = 252/444 (56%), Gaps = 40/444 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG  Q+  P  ++  Y  M +    P+ +TFP ++KAC  L  ++  G  VH  V + 
Sbjct: 84  MIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVK-MGFGVHGRVFRL 142

Query: 61  GFGEDPFVVSSLLEF-------------------------------YSLVHKMGTARALF 89
           GF  + FV ++L+ F                               Y+   ++G AR LF
Sbjct: 143 GFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLF 202

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
           D+ P +D+V+W  M+ GY K G+ E+AR+LF+++P+R+ V+W+A++A Y      ++ L 
Sbjct: 203 DEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALE 262

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-NVILATAVVDMY 208
           +F +M+ VG  P+E  ++S+L+AC  LG +  G  +H           +V+L  A++DMY
Sbjct: 263 MFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMY 322

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG +  AL VF+G+  KD   WN+++ G+A +G A+KS+ LF  M K   +P E TFV
Sbjct: 323 AKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFV 382

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KM 327
            VL  C+HA  V +G   F+ M   Y +EP + HY C+VDLL RAG++ EA  FI+  K+
Sbjct: 383 GVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKI 442

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
                 +A VW  LL ACRI+G +E+G R   +L +M   +   +VL  NIY   G WD 
Sbjct: 443 ----EPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWD- 497

Query: 387 EANKVRKLISETGMKKKPGCSVIE 410
              KVRKL+ ++G++K+ GCS+IE
Sbjct: 498 GVEKVRKLMDDSGVRKEAGCSLIE 521



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 167/423 (39%), Gaps = 67/423 (15%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV--HKMGTA 85
           P+      L ++C  +G L+     +HA ++  GF  +   +  L+   S+     M  A
Sbjct: 11  PSRQQRSQLWRSCTTIGTLKQ----IHASMIVKGFNSNTSALRELIYASSIAISGTMAYA 66

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
             LF    + D   W TM+ G  +     NA                             
Sbjct: 67  HQLFPHITEPDTFMWNTMIRGSAQSPSPLNA----------------------------- 97

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
             +SL+ QM+   ++P++     VL AC  L  +  G  VH    R   E N  +   ++
Sbjct: 98  --ISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLI 155

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
             ++ CG +  A ++F+G + +D  AW+A+ +G A  G+   + +LFD M      P + 
Sbjct: 156 YFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEM------PVKD 209

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE--HYACVVDLLARAGMVEEAEKFI 323
                +    +AK         E+   ++   P+ +   +  ++      G  ++A +  
Sbjct: 210 LVSWNVMITGYAKR-----GEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMF 264

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS--YNIYKE 381
           EE        D     +LLSAC   G ++ G R+   ++EMG  D S  + +   ++Y +
Sbjct: 265 EEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAK 324

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441
            G     + VR L    GM++K    V   N V    L G   H  A    + IH F +M
Sbjct: 325 CG-----SIVRALEVFQGMREK---DVSTWNSV----LGGLAFHGHA---EKSIHLFTEM 369

Query: 442 SNL 444
             L
Sbjct: 370 RKL 372


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 164/444 (36%), Positives = 252/444 (56%), Gaps = 40/444 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG  Q+  P  ++  Y  M +    P+ +TFP ++KAC  L  ++  G  VH  V + 
Sbjct: 49  MIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVK-MGFGVHGRVFRL 107

Query: 61  GFGEDPFVVSSLLEF-------------------------------YSLVHKMGTARALF 89
           GF  + FV ++L+ F                               Y+   ++G AR LF
Sbjct: 108 GFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLF 167

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
           D+ P +D+V+W  M+ GY K G+ E+AR+LF+++P+R+ V+W+A++A Y      ++ L 
Sbjct: 168 DEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALE 227

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-NVILATAVVDMY 208
           +F +M+ VG  P+E  ++S+L+AC  LG +  G  +H           +V+L  A++DMY
Sbjct: 228 MFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMY 287

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG +  AL VF+G+  KD   WN+++ G+A +G A+KS+ LF  M K   +P E TFV
Sbjct: 288 AKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFV 347

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KM 327
            VL  C+HA  V +G   F+ M   Y +EP + HY C+VDLL RAG++ EA  FI+  K+
Sbjct: 348 GVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKI 407

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
                 +A VW  LL ACRI+G +E+G R   +L +M   +   +VL  NIY   G WD 
Sbjct: 408 ----EPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWD- 462

Query: 387 EANKVRKLISETGMKKKPGCSVIE 410
              KVRKL+ ++G++K+ GCS+IE
Sbjct: 463 GVEKVRKLMDDSGVRKEAGCSLIE 486



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 144/338 (42%), Gaps = 30/338 (8%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    A +LF  + E +   W+ ++   ++       +SL+ QM+   ++P++     VL
Sbjct: 26  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC  L  +  G  VH    R   E N  +   ++  ++ CG +  A ++F+G + +D  
Sbjct: 86  KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AW+A+ +G A  G+   + +LFD M      P +      +    +AK         E+ 
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEM------PVKDLVSWNVMITGYAKR-----GEMESA 194

Query: 291 SAVYGVEPQLE--HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
             ++   P+ +   +  ++      G  ++A +  EE        D     +LLSAC   
Sbjct: 195 RKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDL 254

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLS--YNIYKEAGWDMEANKVRKLISETGMKKKPGC 406
           G ++ G R+   ++EMG  D S  + +   ++Y + G     + VR L    GM++K   
Sbjct: 255 GDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCG-----SIVRALEVFQGMREK--- 306

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
            V   N V    L G   H  A    + IH F +M  L
Sbjct: 307 DVSTWNSV----LGGLAFHGHA---EKSIHLFTEMRKL 337


>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
 gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
          Length = 521

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 160/424 (37%), Positives = 236/424 (55%), Gaps = 9/424 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR       P+ +V  ++DML     P   T P L+ A   LG   + G  +H   +K 
Sbjct: 103 VIRALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAAYARLGRAGD-GAALHGMALKL 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V ++ +  Y+   +   A ALF + P+ D V   + +    + G  + AR +F
Sbjct: 162 GLAGDAYVRNATIAMYASCARADEALALFGQCPEFDAVACNSAIVALARAGRVDEARAVF 221

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPER   +WSA+++AY+R +   E L+LF  MQ  G++PN + LVSVL  CA LGA+ 
Sbjct: 222 DGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGVEPNANVLVSVLGCCASLGALD 281

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMIS 237
           QG WVH+Y  R+ +  N ++ TA+VDMY KCG V  A  VF+   ++ +    +WN+M+ 
Sbjct: 282 QGAWVHAYIDRHGVAMNALVVTALVDMYCKCGSVDDARQVFDAARSQGSAKLSSWNSMMQ 341

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+A++G  ++++ LF  +   G  P   TF+AVLT   HA M  +    F +M+  + VE
Sbjct: 342 GLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYGHAGMPDEAQAAFASMATEHSVE 401

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           P +EHY C+VD LARAG + EAE  I    M      DA VWGALLS CR++G  E+G R
Sbjct: 402 PGIEHYGCLVDALARAGRLREAEDAIRSMPM----APDAAVWGALLSGCRLHGDAELGAR 457

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             R+       D   +VL+ ++    G       VR  + E G+ K PGCS+IEVNGVV 
Sbjct: 458 AAREAVRCDPRDSGAYVLAASVLARGGNPGRGAGVRGRMREAGVGKVPGCSMIEVNGVVH 517

Query: 417 EFLA 420
           EF++
Sbjct: 518 EFVS 521



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/413 (22%), Positives = 152/413 (36%), Gaps = 68/413 (16%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +VK G  +DP   S  + F +               P RDV               
Sbjct: 52  LHAALVKSGLAKDPIAASRAVAFCA--------------GPGRDV--------------- 82

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  L    P  N+  W+ ++ A S  +  +  ++LF  M      P    L S+L A
Sbjct: 83  -SYAERLVRHHPRPNSFMWNTVIRALSDGARPEAAVALFVDMLGSPTPPERRTLPSLLAA 141

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC--------------------- 211
            A LG    G  +H  A +  L  +  +  A + MY+ C                     
Sbjct: 142 YARLGRAGDGAALHGMALKLGLAGDAYVRNATIAMYASCARADEALALFGQCPEFDAVAC 201

Query: 212 ----------GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                     G V  A +VF+G+  +    W+AM+S  A      ++L LF  M   G +
Sbjct: 202 NSAIVALARAGRVDEARAVFDGMPERTVATWSAMVSAYARAARCGEALALFSAMQADGVE 261

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P     V+VL  C     +  G  +   +   +GV         +VD+  + G V++A +
Sbjct: 262 PNANVLVSVLGCCASLGALDQGAWVHAYID-RHGVAMNALVVTALVDMYCKCGSVDDARQ 320

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYK 380
             +      G    + W +++    ++G+      ++ +L   G++ D  T +     Y 
Sbjct: 321 VFDAAR-SQGSAKLSSWNSMMQGLAVHGQWREAVALFSELRSYGLSPDNVTFIAVLTAYG 379

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
            AG   EA      ++ T    +PG   IE  G + + LA   R  +A +  R
Sbjct: 380 HAGMPDEAQAAFASMA-TEHSVEPG---IEHYGCLVDALARAGRLREAEDAIR 428


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/425 (37%), Positives = 247/425 (58%), Gaps = 15/425 (3%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML    +PN +T   L+KAC  L P       VH+H +KFG     +V + L++ Y+
Sbjct: 109 YSQMLTHPIQPNAFTLSSLLKACT-LHPARA----VHSHAIKFGLSSHLYVSTGLVDAYA 163

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               + +A+ LFD  P+R +V++T M+  Y K G    AR LFE M  ++ V W+ ++  
Sbjct: 164 RGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDG 223

Query: 138 YSRISDFKEVLSLFRQMQEVG-------MKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           Y++     E L  FR+M  +        ++PNE  +V+VL++C  +GA+  G WVHSY +
Sbjct: 224 YAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVE 283

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
              ++ NV + TA+VDMY KCG +  A  VF+ +  KD  AWN+MI G  ++G + ++L+
Sbjct: 284 NNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQ 343

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           LF  M   G +P++ TFVAVLT C HA +V  G  +F++M   YG+EP++EHY C+V+LL
Sbjct: 344 LFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLL 403

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
            RAG ++EA   +          D  +WG LL ACRI+  + +G  +   L   G+    
Sbjct: 404 GRAGRMQEAYDLVRSME---VEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSG 460

Query: 371 THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGE 430
           T+VL  N+Y  A   +   KVR ++  +G++K+PGCS IEV   V EF+AGD RH ++ +
Sbjct: 461 TYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKD 520

Query: 431 IYRVI 435
           IY ++
Sbjct: 521 IYSML 525



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 128/298 (42%), Gaps = 47/298 (15%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y  +G   ++  LF + P  N   W+ I+ A++    F   LS + QM    ++PN   L
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS------- 219
            S+L AC     +     VHS+A ++ L  ++ ++T +VD Y++ G V SA         
Sbjct: 125 SSLLKAC----TLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPE 180

Query: 220 ------------------------VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
                                   +FEG+  KD   WN MI G A +G   ++L  F +M
Sbjct: 181 RSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKM 240

Query: 256 VKSG-------TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           +           +P E T VAVL++C     +  G     +     G++  +     +VD
Sbjct: 241 MMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECG-KWVHSYVENNGIKVNVRVGTALVD 299

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +  + G +E+A K  +     + G D   W +++    I+G  +   +++ ++  +G+
Sbjct: 300 MYCKCGSLEDARKVFDV----MEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGV 353



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 75/198 (37%), Gaps = 40/198 (20%)

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
           L +H+   R  L  + IL   +   Y+  GH+H ++++F    N +   W  +I+  A  
Sbjct: 40  LQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHF 99

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-------HAKMVRDGLN---------- 285
                +L  + +M+    QP   T  ++L  CT       H+  ++ GL+          
Sbjct: 100 DLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLV 159

Query: 286 --------------LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
                         LF+ M      E  L  Y  ++   A+ GM+ EA    E    G+G
Sbjct: 160 DAYARGGDVASAQKLFDAMP-----ERSLVSYTAMLTCYAKHGMLPEARVLFE----GMG 210

Query: 332 GGDANVWGALLSACRIYG 349
             D   W  ++     +G
Sbjct: 211 MKDVVCWNVMIDGYAQHG 228


>gi|357519199|ref|XP_003629888.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355523910|gb|AET04364.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 515

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 169/434 (38%), Positives = 247/434 (56%), Gaps = 13/434 (2%)

Query: 7   QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP 66
            + F KL  F +  ML+    PN++TF  L+KACV L  LE     V    +K G   D 
Sbjct: 66  NSQFHKL-FFVFTKMLNTNIRPNSHTFTTLVKACVSLSSLEQ----VFTLSMKLGNSSDV 120

Query: 67  FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER 126
           + VSS++  +S    +  AR +FD+  +R+VV WT++V GY   G    AR++F+KMP R
Sbjct: 121 YFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSLVSGYCSCGLVNEARDVFDKMPLR 180

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQE-----VGMKPNESGLVSVLTACAHLGAITQ 181
           N  S+SA+++ Y R   F E + LFR++++       +K N + LVSVL AC  +GA  +
Sbjct: 181 NEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCACLKFNGALLVSVLNACTMVGAFEE 240

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G W+HSY +   LE ++ L TA++D Y KCG V  A  VF  +  KD   W+AMI G+A+
Sbjct: 241 GKWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGAEKVFNKMPVKDVATWSAMILGLAI 300

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           NG+ K +LELF++M K G +P E TFV VLT C H  +  +   LF  MS  Y + P +E
Sbjct: 301 NGNNKMALELFEKMEKVGPKPNEVTFVGVLTACNHKSLFGESARLFGIMSEKYNITPSIE 360

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY CVVD+LAR+G V++A  FI          D  +WG+LL+ C ++G  E+G +V + L
Sbjct: 361 HYGCVVDVLARSGQVKKALTFINSMH---IEPDGAIWGSLLNGCLMHGHYELGQKVGKYL 417

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            E        +VL  N+Y   G     ++VRKL+ + G+    G S IE++  + +F A 
Sbjct: 418 IEFEPKHSGRYVLLANMYANMGKWEGVSEVRKLMKDRGVMIVSGWSFIEIDQTIHKFFAD 477

Query: 422 DNRHAQAGEIYRVI 435
           D     + EIY V+
Sbjct: 478 DKCCLYSREIYDVL 491



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 142/346 (41%), Gaps = 67/346 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH +        ++ S +L F++L             SP                 GD
Sbjct: 7   IHAHAITNNLTRFSYISSRILAFFAL-------------SPR----------------GD 37

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F  A  LF  +P  N   +++I+ +Y+  S F ++  +F +M    ++PN     +++ A
Sbjct: 38  FRYAETLFTHIPNPNIFDYNSIITSYTTNSQFHKLFFVFTKMLNTNIRPNSHTFTTLVKA 97

Query: 173 CAHLGAITQGLW-----------------VHSYAKR--YHL---------EKNVILATAV 204
           C  L ++ Q                    +++++K    HL          +NV+  T++
Sbjct: 98  CVSLSSLEQVFTLSMKLGNSSDVYFVSSVINAFSKHSAIHLARQVFDECSNRNVVCWTSL 157

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           V  Y  CG V+ A  VF+ +  ++  +++AM+SG   NG   + ++LF  + K       
Sbjct: 158 VSGYCSCGLVNEARDVFDKMPLRNEASYSAMVSGYVRNGFFSEGVQLFRELKKKDKGCAC 217

Query: 265 TTF-----VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             F     V+VL  CT      +G     +     G+E  LE    ++D   + G V+ A
Sbjct: 218 LKFNGALLVSVLNACTMVGAFEEG-KWIHSYVEENGLEYDLELGTALIDFYMKCGWVKGA 276

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           EK   +    +   D   W A++    I G  ++   ++ K+ ++G
Sbjct: 277 EKVFNK----MPVKDVATWSAMILGLAINGNNKMALELFEKMEKVG 318


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 176/503 (34%), Positives = 267/503 (53%), Gaps = 76/503 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC---VILGPLENFGMFVHAHV 57
           +IR +++ + P L+   + +M D G   +N+T+P L+KAC   V +  +E     +HA V
Sbjct: 86  LIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVE----MIHAQV 141

Query: 58  VKFGFGEDPFVVSSLLEFY---------------------------------SLVHKMGT 84
            K GF  D FV +SL++ Y                                   V ++G 
Sbjct: 142 EKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELGE 201

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR LFD+ P+RD V+W T++DGY K G+   A ELFEKMP RN VSWS ++  YS+  D 
Sbjct: 202 ARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGDM 261

Query: 145 -------------------------------KEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
                                          K+ ++L+ QM+E G+K ++  ++S+L+AC
Sbjct: 262 DMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSAC 321

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A  G +  G  VH+  +R   + +  ++ A++DMY+KCG + +ALS+F G+  KD  +WN
Sbjct: 322 AVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWN 381

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           A+I G+AM+G  +K+L+LF RM   G  P + TFV VL  CTHA  V +GL+ F  M   
Sbjct: 382 AIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERD 441

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           YGV P++EHY C+VDLL R G ++EA + +          +A +WG LL ACR++    +
Sbjct: 442 YGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMP---LEPNAIIWGTLLGACRMHSATGL 498

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVN 412
              V+ +L +  ++D     +  NIY  AG WD  AN +R  +  T ++K  G S IEV+
Sbjct: 499 AEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFAN-IRLRMKSTSIQKPSGGSSIEVD 557

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
             V EF   D  H ++  IY+ I
Sbjct: 558 DEVHEFTVFDRSHPKSDRIYKTI 580



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 137/334 (41%), Gaps = 65/334 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA V+K     + FV   L+  +SL  +M  A  +F++  D DV+ + T++        
Sbjct: 36  IHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLI-------- 87

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                   A+ R S+     S+F +MQ+ G+  +      +L A
Sbjct: 88  -----------------------RAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKA 124

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--HVHSALSVFEGISNKDAG 230
           C+    +     +H+  ++     ++ +  +++D Y KCG   V +A  VFE ++ +D  
Sbjct: 125 CSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTV 184

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN+MI G+   G+  ++  LFD M +  T     ++  +L     A  +     LFE M
Sbjct: 185 SWNSMIGGLVKVGELGEARRLFDEMPERDT----VSWNTILDGYVKAGEMNAAFELFEKM 240

Query: 291 SA------------------------VYGVEP--QLEHYACVVDLLARAGMVEEAEKFIE 324
            A                        ++   P   L  +  ++   A  G+ ++A     
Sbjct: 241 PARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYN 300

Query: 325 E-KMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           + +  GL   D  V  ++LSAC + G + +G RV
Sbjct: 301 QMEEAGLKFDDGTVI-SILSACAVSGLLGLGKRV 333



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 115/288 (39%), Gaps = 46/288 (15%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           +S L  C+ L  + Q   +H+   + +L +   +   ++  +S C  +  A++VF  I +
Sbjct: 21  ISDLHRCSSLNQVKQ---IHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQD 77

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT----------- 275
            D   +N +I     N +   +  +F  M  SG      T+  +L  C+           
Sbjct: 78  PDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMI 137

Query: 276 HAKMVRDG--LNLF--------------ENMSAVYGV-----EPQLEHYACVVDLLARAG 314
           HA++ + G  L++F              + ++A   V     E     +  ++  L + G
Sbjct: 138 HAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVG 197

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
            + EA +  +E    +   D   W  +L      G++     ++ K+    +  +ST VL
Sbjct: 198 ELGEARRLFDE----MPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVL 253

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
            Y+  K    DM     R L  +  +K     +++ ++G  E+ LA D
Sbjct: 254 GYS--KAGDMDM----ARILFDKMPVKNLVPWTIM-ISGYAEKGLAKD 294


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 257/440 (58%), Gaps = 6/440 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +  F   ++  + +ML +G E + +T   L+ A      L+  G FVH ++V  
Sbjct: 209 MIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLD-LGRFVHLYIVIT 267

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V ++L++ Y+    +  A+ +FD+  D+DVV+WT+MV+ Y   G  ENA ++F
Sbjct: 268 GVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIF 327

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP +N VSW++I+    +   + E + LF +M   G+ P+++ LVS+L+ C++ G + 
Sbjct: 328 NHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLA 387

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H Y     +  +V L  +++DMY+KCG + +A+ +F G+  K+  +WN +I  +A
Sbjct: 388 LGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALA 447

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  ++++E+F  M  SG  P E TF  +L+ C+H+ +V  G   F+ M + + + P +
Sbjct: 448 LHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGV 507

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G + EA   I +KM      D  VWGALL ACRIYG +E+  ++ ++
Sbjct: 508 EHYACMVDLLGRGGFLGEAMTLI-QKMP--VKPDVVVWGALLGACRIYGNLEIAKQIMKQ 564

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+G  +   +VL  N+Y E+  WD +  K+RK++ ++G+KK    S IE++G   +F+
Sbjct: 565 LLELGRFNSGLYVLLSNMYSESQRWD-DMKKIRKIMDDSGIKKCRAISFIEIDGCCYQFM 623

Query: 420 AGDNRHAQAGEIYRVIHSFL 439
             D RH  +  IY ++   +
Sbjct: 624 VDDKRHCASTGIYSILDQLM 643



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 143/308 (46%), Gaps = 63/308 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  +N P  S+  +  M+  G  PN +TFP ++KAC    P     + VHA  +K 
Sbjct: 108 LIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAA-KPFYWEAVIVHAQAIKL 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G    V +++L  Y     + +AR +FD   DR +V+W +M+ GY KMG  +      
Sbjct: 167 GMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCD------ 220

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E + LF++M ++G++ +   LVS+L+A +    + 
Sbjct: 221 -------------------------EAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLD 255

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G +VH Y     +E + I+  A++DMY+KCGH+  A  VF+ + +KD  +W +M++  A
Sbjct: 256 LGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYA 315

Query: 241 -------------------------------MNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                                            G   +++ELF RM  SG  P + T V+
Sbjct: 316 NQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVS 375

Query: 270 VLTTCTHA 277
           +L+ C++ 
Sbjct: 376 ILSCCSNT 383



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)

Query: 97  VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
           VVT   ++    + GD   A  LF+++P+ N   ++ ++  YS  +D  + L LFRQM  
Sbjct: 71  VVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVS 130

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
            G  PN+     VL ACA      + + VH+ A +  +  +  +  A++  Y  C  + S
Sbjct: 131 AGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILS 190

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           A  VF+ IS++   +WN+MI+G +  G   +++ LF  M++ G +    T V++L+    
Sbjct: 191 ARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLS--AS 248

Query: 277 AKMVRDGLNLFENMSAVY-GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           +K     L  F ++  V  GVE        ++D+ A+ G ++ A+   ++ +      D 
Sbjct: 249 SKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQML----DKDV 304

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKL 361
             W ++++A    G +E   +++  +
Sbjct: 305 VSWTSMVNAYANQGLVENAVQIFNHM 330


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  299 bits (766), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/426 (38%), Positives = 246/426 (57%), Gaps = 39/426 (9%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           SV  Y+ ML  G  P+N+TFP LIK+     P    G  +HAHVVKFG   D FVV++++
Sbjct: 93  SVTFYVCMLHAGHFPDNFTFPFLIKSSSA-SPTSLLGHQLHAHVVKFGLDRDVFVVNNMI 151

Query: 74  EFYSLVHKMGTARALFDKS--------------------------------PDRDVVTWT 101
             YS   ++ +AR +FD+S                                P ++ V+W 
Sbjct: 152 ALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKNTVSWN 211

Query: 102 TMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMK 160
            M+ GY        AR+LF++MP+R+A SWSA+++ YS++    E L LF +M     M 
Sbjct: 212 AMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMI 271

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           PNE+ LVS ++ACA L A+ +G W+HSY K   L  NV L T ++DMY KCG +  A  V
Sbjct: 272 PNEAALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGV 331

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F  +S ++  +WN+MI+G+A+NG  K++L LF +M   G  P   TF+A+LT C+H+ ++
Sbjct: 332 FNLMSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLI 391

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
            +G  LF  M+ VYG++PQL+HY C+VDLL RAG+V+EA  F+ EKM       + +WGA
Sbjct: 392 TEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFV-EKMP--MKPHSELWGA 448

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETG 399
           L+ ACRI+G++E+G  + ++L ++       + L  NI+  A  WD +   VR L     
Sbjct: 449 LVGACRIHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWD-DVAMVRDLEKGRK 507

Query: 400 MKKKPG 405
           + K PG
Sbjct: 508 VLKNPG 513


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 161/420 (38%), Positives = 248/420 (59%), Gaps = 8/420 (1%)

Query: 15  VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLE 74
           VFC + ++  G +PN  T   ++ A   +G L  FG  V+ +V   G G    + ++L++
Sbjct: 229 VFCRM-VVAGGLQPNEVTLVAVVSAMGQMGLLA-FGRMVYRYVADGGVGRSVNLENALID 286

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            +       +AR +FD    +DV +WTTMV+ Y K GD E+A  LF+ MP RNAVSWS +
Sbjct: 287 MFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGDLESAARLFDDMPRRNAVSWSCM 346

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH-SYAKRYH 193
           +AAYS+ +  +E + LF+ M E G++P  +GLVSVL+ACA LG +  G W++ +Y     
Sbjct: 347 IAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLDLGRWIYDNYVISGK 406

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
               V L  A +D+Y+KCG   +A  +F  ++ ++  +WN+MI   A++G +++ L LF+
Sbjct: 407 AVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVSWNSMIMAHAVHGQSEEVLRLFE 466

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           ++  +   P E TF+ +L+ C+H+ +V +G   F+ M  +YG+EP+ EHYAC++DLL + 
Sbjct: 467 QLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMKLIYGIEPKSEHYACMIDLLGKI 526

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G++EEA    E   G     D   WGALL+ACR+YG +E+G     KL ++   D   +V
Sbjct: 527 GLLEEA---FEVAKGMPMETDEAGWGALLNACRMYGNVEIGEFAADKLVQLNPLDSGIYV 583

Query: 374 LSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           L   IY     WD +   +R L+ E G+KK PGCS IEV+G   EFL  D  H  + +IY
Sbjct: 584 LMSQIYASKNKWD-QVKILRVLMRERGVKKNPGCSSIEVDGKFHEFLVADVSHVHSEDIY 642



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 176/386 (45%), Gaps = 39/386 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           M+R +++A  P  +   +  ++      +  T    IKA        +   G  VH   +
Sbjct: 108 MMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKAAASEHEHHSPSGGEGVHCVAL 167

Query: 59  KFG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           K+G   +   V ++L+ FY+    +  AR LFD+ PDRDVV+WTT+VDGY + G  + A 
Sbjct: 168 KWGHVAQSVLVGNALVHFYANHRSLAHARNLFDEMPDRDVVSWTTLVDGYARRGLADEAW 227

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            +F +M          ++A                     G++PNE  LV+V++A   +G
Sbjct: 228 RVFCRM----------VVAG--------------------GLQPNEVTLVAVVSAMGQMG 257

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  V+ Y     + ++V L  A++DM+ K G   SA  VF+ ++ KD  +W  M++
Sbjct: 258 LLAFGRMVYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVN 317

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A  GD + +  LFD M +        ++  ++   + A    + + LF+ M    GVE
Sbjct: 318 AYAKCGDLESAARLFDDMPRRNA----VSWSCMIAAYSQANQPEEAVRLFKAMIE-EGVE 372

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEK-MGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           P       V+   A+ G ++      +   + G      N+  A +      G  +  ++
Sbjct: 373 PINAGLVSVLSACAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASK 432

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEA 382
           ++ ++AE  +  +++ ++++ ++ ++
Sbjct: 433 LFAEMAERNVVSWNSMIMAHAVHGQS 458



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 140/306 (45%), Gaps = 49/306 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y QAN P+ +V  +  M++ G EP N     ++ AC  LG L+  G +++      
Sbjct: 346 MIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSACAQLGCLD-LGRWIY------ 398

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D +V+S       L   +G A                  +D Y K GDF+ A +LF
Sbjct: 399 ----DNYVISGKA---VLTVNLGNA-----------------FIDVYAKCGDFDAASKLF 434

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M ERN VSW++++ A++     +EVL LF Q++   + P+E   + +L+AC+H G ++
Sbjct: 435 AEMAERNVVSWNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVS 494

Query: 181 QGLWVHSYAKRYHLEKNVILA--------TAVVDMYSKCGHVHSALSVFEGIS-NKDAGA 231
           +G       +RY  E  +I            ++D+  K G +  A  V +G+    D   
Sbjct: 495 EG-------RRYFKEMKLIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAG 547

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           W A+++   M G+ +      D++V+    P ++    +++    +K   D + +   + 
Sbjct: 548 WGALLNACRMYGNVEIGEFAADKLVQ--LNPLDSGIYVLMSQIYASKNKWDQVKILRVLM 605

Query: 292 AVYGVE 297
              GV+
Sbjct: 606 RERGVK 611


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 157/415 (37%), Positives = 250/415 (60%), Gaps = 9/415 (2%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHK 81
           G EPN+ TF  L+ AC    P E+F     +H +  K+G      +V ++L++ YS   +
Sbjct: 87  GVEPNHITFITLLSACADF-PSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQ 145

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +G AR +F     ++ V+W TM++G+ + G+ E A +LF++MP R+A+SW+A++    + 
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
              ++ L  F QMQ  G+  +   +++VL ACA LGA+T GLWVH +      + N+ ++
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS 265

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            +++DMYS+CG +  A  VF  ++ +   +WN++I G A+NG A +SLE F  M K G +
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFK 325

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   ++   LT C+HA +V  GL LF+NM +V+ + P++EHY C+VDL  RAG +E+A  
Sbjct: 326 PDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALN 385

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            IEE        +  V G+LL+ACR +G + +  R+ + L ++     + +VL  NIY  
Sbjct: 386 MIEEMP---MKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAA 442

Query: 382 AG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            G WD  AN VR+ +   G++KKPG S +E++G V EF+AGDN HA A  IY ++
Sbjct: 443 IGKWD-GANNVRRTMKARGVQKKPGYSSVEIDGKVHEFVAGDNYHADADNIYSML 496



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT--QGLWVH 186
           V W++ +A Y R     E  + F +M+  G++PN    +++L+ACA   + +      +H
Sbjct: 58  VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117

Query: 187 SYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
            YA +Y L+  +V++ TA++DMYSKC  +  A  VF  +  K++ +WN M++G   NG+ 
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177

Query: 246 KKSLELFDRM 255
           + +++LFD M
Sbjct: 178 ELAIQLFDEM 187


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 254/495 (51%), Gaps = 69/495 (13%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P L    +  M   G  P+N+T+P L+KAC     L    M +HAHV KFGF  D FV +
Sbjct: 101 PSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRM-IHAHVEKFGFYGDIFVPN 159

Query: 71  SLLEFYSLVHKMGT---------------------------------ARALFDKSPDRDV 97
           SL++ YS     G                                  A  LFD+ P+RD+
Sbjct: 160 SLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDM 219

Query: 98  VTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF------------- 144
           V+W TM+DGY K G+ + A ELFE+MP+RN VSWS ++  YS+  D              
Sbjct: 220 VSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAK 279

Query: 145 ------------------KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
                             +E   L+ +M+E G++P++  L+S+L ACA  G +  G  +H
Sbjct: 280 NVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIH 339

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAMISGVAMNGDA 245
           +  +R+       +  A +DMY+KCG + +A  VF G ++ KD  +WN+MI G AM+G  
Sbjct: 340 ASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHG 399

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
           +K+LELF RMV  G +P   TFV +L  CTHA +V +G   F +M  VYG+ PQ+EHY C
Sbjct: 400 EKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGC 459

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++DLL R G ++EA   +          +A + G LL+ACR++  ++    V  +L ++ 
Sbjct: 460 MMDLLGRGGHLKEAFTLLRSMP---MEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVE 516

Query: 366 ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
            TD   + L  NIY +AG  M    VR  +  TG +K  G S IEV   V EF   D  H
Sbjct: 517 PTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSH 576

Query: 426 AQAGEIYRVIHSFLK 440
            ++ +IY++I   ++
Sbjct: 577 PKSDDIYKMIDRLVQ 591



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 90/205 (43%), Gaps = 32/205 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA V+K    +D FV   L+  +SL   + +A  +F+  P  +V  + +++  +     
Sbjct: 40  IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAH--- 96

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                        S      + F QMQ+ G+ P+      +L A
Sbjct: 97  ---------------------------NTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKA 129

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH--VHSALSVFEGISNKDAG 230
           C    ++     +H++ +++    ++ +  +++D YS+CG   +  A+S+F  +  +D  
Sbjct: 130 CTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVV 189

Query: 231 AWNAMISGVAMNGDAKKSLELFDRM 255
            WN+MI G+   G+ + + +LFD M
Sbjct: 190 TWNSMIGGLVRCGELEGACKLFDEM 214



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 118/280 (42%), Gaps = 45/280 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +  F + +   Y  M + G  P++     ++ AC   G L   G  +HA + ++
Sbjct: 287 IIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAESGML-GLGKRIHASMRRW 345

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD----KSPDRDVVTWTTMVDGYGKMGDFENA 116
            F     V+++ ++ Y+   K G   A FD        +DVV+W +M+ G+   G  E A
Sbjct: 346 RFRCGTKVLNAFIDMYA---KCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKA 402

Query: 117 RELFEKM-PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
            ELF +M PE                                G +P+    V +L AC H
Sbjct: 403 LELFSRMVPE--------------------------------GFEPDTYTFVGLLCACTH 430

Query: 176 LGAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWN 233
            G + +G  + +S  K Y +   V     ++D+  + GH+  A ++   +    +A    
Sbjct: 431 AGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILG 490

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
            +++   M+ D   +  + +++ K   +PT+    ++L+ 
Sbjct: 491 TLLNACRMHNDVDFARAVCEQLFK--VEPTDPGNYSLLSN 528



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 106/255 (41%), Gaps = 44/255 (17%)

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L  C++L ++ Q   +H+   + +L +++ +A  ++  +S C H+ SA++VF  + + + 
Sbjct: 28  LHKCSNLDSVNQ---IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNV 84

Query: 230 GAWNAMISGVAMNGDAKK-SLELFDRMVKSGTQPTETTFVAVLTTCT-----------HA 277
             +N++I   A N          F +M K+G  P   T+  +L  CT           HA
Sbjct: 85  HLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHA 144

Query: 278 KMVRDGL--------NLFENMSAVYGV-------------EPQLEHYACVVDLLARAGMV 316
            + + G         +L ++ S                  E  +  +  ++  L R G +
Sbjct: 145 HVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGEL 204

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           E A K  +E    +   D   W  +L      G+++    ++ ++ +  I  +ST V  Y
Sbjct: 205 EGACKLFDE----MPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGY 260

Query: 377 NIYKEAGWDMEANKV 391
           +     G DM+  +V
Sbjct: 261 S----KGGDMDMARV 271


>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
           thaliana]
 gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
 gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
           thaliana]
          Length = 534

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 160/439 (36%), Positives = 259/439 (58%), Gaps = 8/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG+  +  P+ S+  Y+ ML  G  P++ T+P L+K+   L      G  +H  VVK 
Sbjct: 79  VIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSN-RKLGGSLHCSVVKS 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ ++L+  Y       +AR LFD+ P +++VTW +++D Y K GD  +AR +F
Sbjct: 138 GLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVF 197

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
           ++M ER+ V+WS+++  Y +  ++ + L +F QM  +G  K NE  +VSV+ ACAHLGA+
Sbjct: 198 DEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGAL 257

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF--EGISNKDAGAWNAMIS 237
            +G  VH Y    HL   VIL T+++DMY+KCG +  A SVF    +   DA  WNA+I 
Sbjct: 258 NRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIG 317

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+A +G  ++SL+LF +M +S   P E TF+ +L  C+H  +V++  + F+++    G E
Sbjct: 318 GLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES-GAE 376

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+ EHYAC+VD+L+RAG+V++A  FI E      G   ++ GALL+ C  +G +E+   V
Sbjct: 377 PKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTG---SMLGALLNGCINHGNLELAETV 433

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            +KL E+   +   +V   N+Y        A  +R+ + + G+KK  G S+++++G    
Sbjct: 434 GKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHR 493

Query: 418 FLAGDNRHAQAGEIYRVIH 436
           F+A D  H  + +IY V+ 
Sbjct: 494 FIAHDKTHFHSDKIYAVLQ 512



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 64/328 (19%), Positives = 134/328 (40%), Gaps = 39/328 (11%)

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
           S+ E Y  +H +     L ++ P    V+ T         GD + A +   K+ +     
Sbjct: 20  SMSELYK-IHTLLITLGLSEEEP---FVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYG 75

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+ ++  +S   + ++ +S++ QM   G+ P+      ++ + + L     G  +H    
Sbjct: 76  WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV 135

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN----------------- 233
           +  LE ++ +   ++ MY       SA  +F+ + +K+   WN                 
Sbjct: 136 KSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARL 195

Query: 234 --------------AMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAK 278
                         +MI G    G+  K+LE+FD+M++ G ++  E T V+V+  C H  
Sbjct: 196 VFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLG 255

Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
            +  G  +   +  V+ +   +     ++D+ A+ G + +A          +   DA +W
Sbjct: 256 ALNRGKTVHRYILDVH-LPLTVILQTSLIDMYAKCGSIGDAWSVFYR--ASVKETDALMW 312

Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGI 366
            A++     +G I    +++ K+ E  I
Sbjct: 313 NAIIGGLASHGFIRESLQLFHKMRESKI 340


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 248/442 (56%), Gaps = 8/442 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y +  F + +V  Y  M   GF  + +TFP ++K+ V L  +   G  VH  +++ 
Sbjct: 142 MIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVW-MGKCVHGLILRI 200

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL+  Y    ++  A  +FD    RDV +W  ++ GY K G  + A  +F
Sbjct: 201 GLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIF 260

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHLGA 178
           E+MP RN VSW+ +++ YS+    ++ LSLF +M  ++ G++PN   ++SVL ACA L  
Sbjct: 261 ERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLST 320

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMI 236
           + +G  +H  A R  L  N  +  A+  MY+KCG +  A + F+ ++   K+  AWN MI
Sbjct: 321 LERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMI 380

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +  A  G   +++  F  M+++G QP + TF  +L+ C+H+ +V  GL  F +MS  Y +
Sbjct: 381 TAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSI 440

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P++EHYACV DLL RAG + EA K + E     G    ++WG+LL+ACR +  +E+   
Sbjct: 441 NPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAG---PSIWGSLLAACRKHRNLEMAET 497

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             RKL  +   +   +VL  N+Y EAG   E +K+R ++   G KK PGCS IE+NG   
Sbjct: 498 AARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAH 557

Query: 417 EFLAGDNRHAQAGEIYRVIHSF 438
            FL GD  H Q  EIY  + + 
Sbjct: 558 MFLGGDTSHPQGKEIYMFLEAL 579



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 135/301 (44%), Gaps = 40/301 (13%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           + MV  Y   GD +++  +F  + E +++ +++++ AY+R    +  ++ +  M   G  
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFT 168

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
            +      VL +   L ++  G  VH    R  L+ ++ +AT+++ +Y KCG ++ A  V
Sbjct: 169 GDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKV 228

Query: 221 FEGISNKDAGAWNA-------------------------------MISGVAMNGDAKKSL 249
           F+ ++ +D  +WNA                               MISG + +G A+++L
Sbjct: 229 FDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQAL 288

Query: 250 ELFDRMVK--SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
            LFD MVK  SG +P   T ++VL  C     +  G  + E ++   G+         + 
Sbjct: 289 SLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHE-LACRMGLNSNASVLIALT 347

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMG 365
            + A+ G + +A    ++    L   + N+  W  +++A   YG        +R++ + G
Sbjct: 348 AMYAKCGSLVDARNCFDK----LNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAG 403

Query: 366 I 366
           I
Sbjct: 404 I 404



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 31/215 (14%)

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L  +  G  VH++     L+   ++ + +V  Y+  G + S++SVF GI    +  +N+M
Sbjct: 83  LNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSM 142

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-----------CTHAKMVRDGL 284
           I   A  G A++++  +  M   G      TF  VL +           C H  ++R GL
Sbjct: 143 IRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGL 202

Query: 285 NLFENMSAVYGVEPQLEHYAC--VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
                         Q + Y    ++ L  + G + +A K  +     +   D + W ALL
Sbjct: 203 --------------QFDLYVATSLIILYGKCGEINDAGKVFDN----MTIRDVSSWNALL 244

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           +     G I+    ++ ++    I  ++T +  Y+
Sbjct: 245 AGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYS 279


>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 478

 Score =  298 bits (764), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 255/456 (55%), Gaps = 16/456 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY +++ P  +V CY  M+    EP+ +T   L+ AC   G L   G  VHA V+  
Sbjct: 12  VIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACA-RGGLVKEGEQVHATVLVK 70

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  + FV +SL+ FY+    +  AR +FD  P R VV+W +M+ GY +  DF+ AR +F
Sbjct: 71  GYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGARRVF 130

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP RN VSW+ ++A  +R    ++ L LF +M+   ++ ++  LV+ L+ACA LG + 
Sbjct: 131 DVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAALSACAELGDLK 190

Query: 181 QGLWVHSYAKRYHLEKN-----VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
            G W+H Y ++  + +N     V L  A++ MY+ CG +H A  VF  +  K   +W +M
Sbjct: 191 LGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVFVKMPRKSTVSWTSM 250

Query: 236 ISGVAMNGDAKKSLELFDRMVK-----SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           I   A  G  K++L+LF  M+       G +P E TF+ VL  C+HA  V +G  +F +M
Sbjct: 251 IMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEGHQIFASM 310

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
              +G+ P +EHY C+VDLL+RAG+++EA   IE     L   DA +WGALL  CRI+  
Sbjct: 311 KHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETM--PLNPNDA-IWGALLGGCRIHRN 367

Query: 351 IEVGNRVWRKLAEMGITDFSTH--VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
            E+ ++V  KL      D +    VL  NIY       +   VR+ + E G+KK PG S 
Sbjct: 368 SELASQVENKLVPELNGDQAAGYLVLLSNIYAFGQRWQDVITVRQKMIEMGVKKPPGRSW 427

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           I++NGVV  F+AGD  H  +  IY  +    K +NL
Sbjct: 428 IQINGVVHNFIAGDMTHKHSSFIYETLRDVTKQANL 463



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 35/232 (15%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           M       W+ ++  Y+R     + +  +  M     +P+     S+L+ACA  G + +G
Sbjct: 1   MDNPTTTVWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEG 60

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA-------- 234
             VH+         NV + T+++  Y+  G V  A  VF+G+  +   +WN+        
Sbjct: 61  EQVHATVLVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRC 120

Query: 235 -----------------------MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
                                  M++G A NG ++++L LF  M ++  +  +   VA L
Sbjct: 121 ADFDGARRVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRACVELDQVALVAAL 180

Query: 272 TTCTHAKMVRDGLNLF----ENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           + C     ++ G  +     +   A    +P +     ++ + A  G++ EA
Sbjct: 181 SACAELGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEA 232


>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1281

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 166/439 (37%), Positives = 258/439 (58%), Gaps = 8/439 (1%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            +IRG+  +  P+ S+  Y+ +L  GF P++ T+P L+K+   L   E  G  +H  VVK 
Sbjct: 825  VIRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKSSSRLSNRE-IGGSLHCSVVKT 883

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G   D F+ ++L+  Y       +AR LFD+ P +++VTW +++D Y K GD  +AR +F
Sbjct: 884  GLEWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNLVTWNSILDSYAKSGDVVSARLVF 943

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
            ++M  R+ V+WS+++  Y +  ++ E L +F QM  +G  K NE  +VSVL ACAHLG +
Sbjct: 944  DEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGEL 1003

Query: 180  TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAGAWNAMIS 237
             +G  VH Y    HL   VIL T+++DMY+KCG +  A  VF G S K  DA  WNAMI 
Sbjct: 1004 NRGKVVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIG 1063

Query: 238  GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
            G+A +G  ++SL LF +M +S   P E TF+ +L  C+H  +V++  + F ++    G E
Sbjct: 1064 GLASHGFIRESLLLFHKMRESEIDPDEITFLCLLAACSHGGLVKEAWHFFTSLKES-GAE 1122

Query: 298  PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
            P+ EHYAC+VD+L+RAG+V++A  FI E +    G   +V GAL + C  +G +E+   V
Sbjct: 1123 PKSEHYACMVDVLSRAGLVKDAHDFISEMLIKPTG---SVLGALFNGCINHGNLELAETV 1179

Query: 358  WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             +KL E+   +   +V   N+Y        A  +R+ + + G+KK  G S+I++NG    
Sbjct: 1180 GKKLIELQPHNDGRYVGLANVYAINKQFGAARSMREAMEKKGVKKIAGHSIIKLNGTSHR 1239

Query: 418  FLAGDNRHAQAGEIYRVIH 436
            F+A D  H  + +IY V+ 
Sbjct: 1240 FIAHDQTHFHSDKIYAVLQ 1258



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/324 (19%), Positives = 129/324 (39%), Gaps = 46/324 (14%)

Query: 75   FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            F  +VHK       F  S DR+   +   VD      D   A +L  K+       W+ +
Sbjct: 777  FREMVHK-----GRFPVSVDRN---YLLAVDA---TSDVNYAYKLLSKLSNPPDYGWNFV 825

Query: 135  MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
            +  +S   + ++ + ++ Q+   G  P+      +L + + L     G  +H    +  L
Sbjct: 826  IRGFSNSKNPEKSIRVYIQILRSGFSPDHMTYPFLLKSSSRLSNREIGGSLHCSVVKTGL 885

Query: 195  EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA--------- 245
            E ++ ++  ++ MY       SA  +F+ +  K+   WN+++   A +GD          
Sbjct: 886  EWDLFISNTLIHMYGSFRDKASARKLFDEMPYKNLVTWNSILDSYAKSGDVVSARLVFDE 945

Query: 246  ----------------------KKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRD 282
                                   ++LE+FD+M++ G ++  E T V+VL  C H   +  
Sbjct: 946  MTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNR 1005

Query: 283  GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            G  +   +  V+ +   +     ++D+ A+ G + +A          +   DA +W A++
Sbjct: 1006 GKVVHRYILDVH-LPLTVILQTSLIDMYAKCGSIGDAWGVF--CGASVKKTDALMWNAMI 1062

Query: 343  SACRIYGKIEVGNRVWRKLAEMGI 366
                 +G I     ++ K+ E  I
Sbjct: 1063 GGLASHGFIRESLLLFHKMRESEI 1086



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 100/217 (46%), Gaps = 26/217 (11%)

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER----NAVSWSAIMAAYSRISD 143
           +++   + DV+T+T+++ G         A   + +M  +    N +++ A++        
Sbjct: 675 MYEDEKNPDVITYTSLIHGLCASRRPSEAISRWNEMKGKDCYPNRITFMALIQGLCNCGW 734

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-----WVHSYAKRYHLEKNV 198
             E L  FR+M+E  M+P+ +  +S++++      I+ G       VH       +++N 
Sbjct: 735 SSEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENISAGFGIFREMVHKGRFPVSVDRNY 794

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +LA   VD  S   + +  LS    +SN     WN +I G + + + +KS+ ++ ++++S
Sbjct: 795 LLA---VDATSDVNYAYKLLS---KLSNPPDYGWNFVIRGFSNSKNPEKSIRVYIQILRS 848

Query: 259 GTQPTETTFVAVLTTCT-----------HAKMVRDGL 284
           G  P   T+  +L + +           H  +V+ GL
Sbjct: 849 GFSPDHMTYPFLLKSSSRLSNREIGGSLHCSVVKTGL 885



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 5/131 (3%)

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + V+D   K   V+ A+++   I           +N +I G+   G +++SL+L   M  
Sbjct: 443 SIVIDCLVKANKVNMAVTLLHDIVQNGLIPSLMMYNNIIEGMCKEGRSEESLKLLAEMKD 502

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G +P++ T   +             L+L + M   YG EP ++H  C+V  L   G   
Sbjct: 503 AGVEPSQYTLNCIYGCLAERCDFAGALDLLKKMR-FYGFEPWIKHTTCLVKKLCENGKAV 561

Query: 318 EAEKFIEEKMG 328
           +A K+I++  G
Sbjct: 562 DACKYIDDVAG 572



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 128/310 (41%), Gaps = 29/310 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYT----FPPLIKACVILGPLENFGMFVHAH 56
           +I G  +    + S+    +M D G EP+ YT    +  L + C   G L+         
Sbjct: 480 IIEGMCKEGRSEESLKLLAEMKDAGVEPSQYTLNCIYGCLAERCDFAGALDLLKK----- 534

Query: 57  VVKFGFGEDPFV------VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
            ++F +G +P++      V  L E    V        +  +   R +V++T  ++G  + 
Sbjct: 535 -MRF-YGFEPWIKHTTCLVKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIRN 592

Query: 111 GDFENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
              +   ELF          + +++  ++ A  +     E  +LF +M   G+KP+ +  
Sbjct: 593 EGVDRGLELFRDTCANGHCPDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKPSVATY 652

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEGI 224
            S++      G I +GL      + Y  EKN  VI  T+++           A+S +  +
Sbjct: 653 NSMIDGWCKEGEIDRGL--SCIVRMYEDEKNPDVITYTSLIHGLCASRRPSEAISRWNEM 710

Query: 225 SNKDAG----AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
             KD       + A+I G+   G + ++L  F  M +   +P    +++++++   ++ +
Sbjct: 711 KGKDCYPNRITFMALIQGLCNCGWSSEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENI 770

Query: 281 RDGLNLFENM 290
             G  +F  M
Sbjct: 771 SAGFGIFREM 780



 Score = 40.8 bits (94), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 5/178 (2%)

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           +E L L  +M++ G++P++  L  +    A        L +    + Y  E  +   T +
Sbjct: 491 EESLKLLAEMKDAGVEPSQYTLNCIYGCLAERCDFAGALDLLKKMRFYGFEPWIKHTTCL 550

Query: 205 VDMYSKCGHVHSALSVFEGISN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           V    + G    A    + ++     +   ++ A I G+  N    + LELF     +G 
Sbjct: 551 VKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIRNEGVDRGLELFRDTCANGH 610

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
            P    +  ++     A    +  NLF  M +  G++P +  Y  ++D   + G ++ 
Sbjct: 611 CPDVIAYHVLIKALCKACRTTEADNLFNEMVS-KGLKPSVATYNSMIDGWCKEGEIDR 667


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/415 (37%), Positives = 250/415 (60%), Gaps = 9/415 (2%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHK 81
           G EPN+ TF  L+ AC    P E+F     +H +  K+G      +V ++L++ YS   +
Sbjct: 87  GVEPNHITFITLLSACADF-PSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQ 145

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +G AR +F     ++ V+W TM++G+ + G+ E A +LF++MP R+A+SW+A++    + 
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
              ++ L  F QMQ  G+  +   +++VL ACA LGA+T GLWVH +      + N+ ++
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVMPQEFKDNIKIS 265

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            +++DMYS+CG +  A  VF  ++ +   +WN++I G A+NG A +SLE F  M K G +
Sbjct: 266 NSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFK 325

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   ++   LT C+HA +V  GL LF+NM +V+ + P++EHY C+VDL  RAG +E+A  
Sbjct: 326 PDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALN 385

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            IEE        +  V G+LL+ACR +G + +  R+ + L ++     + +VL  NIY  
Sbjct: 386 MIEEMP---MKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEGDAYYVLLSNIYAA 442

Query: 382 AG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            G WD  AN VR+ +   G++KKPG S +E++G V EF+AGDN HA A  IY ++
Sbjct: 443 IGKWD-GANNVRRTMKARGVQKKPGYSSVEIDGKVHEFVAGDNYHADADNIYSML 496



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/130 (33%), Positives = 77/130 (59%), Gaps = 3/130 (2%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT--QGLWVH 186
           V W++ +A Y R     E  + F +M+  G++PN    +++L+ACA   + +      +H
Sbjct: 58  VLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLH 117

Query: 187 SYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
            YA +Y L+  +V++ TA++DMYSKC  +  A  VF  +  K++ +WN M++G   NG+ 
Sbjct: 118 GYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGEI 177

Query: 246 KKSLELFDRM 255
           + +++LFD M
Sbjct: 178 ELAIQLFDEM 187


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/373 (39%), Positives = 228/373 (61%), Gaps = 4/373 (1%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D  + S L+  Y     M  AR LFDK P+RD ++W  M++GY   G+ E   ++F++M
Sbjct: 205 RDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEM 264

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQG 182
           PERN  SW+ ++  Y +   F E L  F++M   G + PN+  LV+VL+AC+ LGA+  G
Sbjct: 265 PERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMG 324

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            WVH YA+    + N+ +   ++DMY+KCG + +A+ VF  +  KD  +WN +I+G+A++
Sbjct: 325 KWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNCLDRKDIISWNTIINGLAIH 384

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G A  +L +FDRM   G +P   TFV +L+ CTH  +V+DG   F++M   Y + PQ+EH
Sbjct: 385 GHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEH 444

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y C+VDLL RAG++++A  FI  KM      DA +W ALL ACR+Y  +E+     ++L 
Sbjct: 445 YGCMVDLLGRAGLLDQALNFI-RKMP--IEPDAVIWAALLGACRLYKNVEIAELALQRLI 501

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           E+   + +  V+  NIYK+ G   +  +++  + +TG +K PGCSVIE N  V EF + D
Sbjct: 502 ELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGCSVIECNDSVVEFYSLD 561

Query: 423 NRHAQAGEIYRVI 435
            RH++   IYRV+
Sbjct: 562 ERHSETESIYRVL 574



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 157/352 (44%), Gaps = 50/352 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           M RGY+Q    + +V  + ++  +   PN +TFP +IK+C   G LE    G  VH    
Sbjct: 81  MFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSC---GKLEGVREGEEVHCCAT 137

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GF  + FV +SL++ YS    +  A  +F +  +R+VV WT +++GY   GD  + R 
Sbjct: 138 KHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIINGYILCGDVVSGRR 197

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+  PER+ V WS +++ Y    +      LF +M      PN                
Sbjct: 198 LFDLAPERDVVMWSVLISGYIESKNMAAARELFDKM------PN---------------- 235

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
                            ++ +   A+++ Y+  G V     VF+ +  ++  +WN +I G
Sbjct: 236 -----------------RDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGG 278

Query: 239 VAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              NG   ++LE F RM+  G   P + T VAVL+ C+    +  G  +     ++ G +
Sbjct: 279 YVKNGLFSETLESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESI-GYK 337

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
             L     ++D+ A+ G++E A          L   D   W  +++   I+G
Sbjct: 338 GNLFVGNVLIDMYAKCGVIENAVVV----FNCLDRKDIISWNTIINGLAIHG 385



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 75/139 (53%)

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           +AR+LF+K+P+ N  +W+A+   Y +    ++ + LF ++  +   PN      ++ +C 
Sbjct: 62  HARKLFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCG 121

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            L  + +G  VH  A ++  + N  +AT+++DMYSK G V  A  VF  +  ++   W A
Sbjct: 122 KLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTA 181

Query: 235 MISGVAMNGDAKKSLELFD 253
           +I+G  + GD      LFD
Sbjct: 182 IINGYILCGDVVSGRRLFD 200



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 94/214 (43%), Gaps = 8/214 (3%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E   +++L +C +   + Q   + +    + LE N  +A   +   S+   +H A  +F+
Sbjct: 12  EEKFITLLRSCKNYERLHQ---IQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFD 68

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            I   +   WNAM  G   NG  + ++ LF  + +    P   TF  ++ +C   + VR+
Sbjct: 69  KIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVRE 128

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G  +    +  +G +        ++D+ ++ G VE+A K      G +   +  VW A++
Sbjct: 129 GEEV-HCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKV----FGEMHERNVVVWTAII 183

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +   + G +  G R++    E  +  +S  +  Y
Sbjct: 184 NGYILCGDVVSGRRLFDLAPERDVVMWSVLISGY 217


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/422 (37%), Positives = 255/422 (60%), Gaps = 10/422 (2%)

Query: 25  GFEPNNYTFPPLIKACVILGPLE--NFGMFVHAHVVKFGFG-EDPFVVSSLLEFYSLVHK 81
           G  PN+ TF  L+ AC    PLE   FG  +HA+V K G   E+  V ++L++ YS   +
Sbjct: 84  GVRPNHITFLTLLSACTDF-PLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQ 142

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +  A  +FD+   R+ V+W TM+DG  + G+   A  LF++M ER+A+SW++++  + + 
Sbjct: 143 LDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKK 202

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
             F++ L  FR+MQ  G++P+   ++SVL ACA+LGA+  GLW++ +  +   + N+ ++
Sbjct: 203 GCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKIS 262

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            +++DMYS+CG +  A  VFE +  +   +WN+MI G A+NG A+++LE F+ M K G +
Sbjct: 263 NSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFR 322

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   +F   LT C+H+ +V +GL  F+ M     + P++EHY C+VDL +RAG +E+A  
Sbjct: 323 PDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALN 382

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            I          +  V G+LL+ACR +G + +  R+ + L E+     S +VL  NIY  
Sbjct: 383 VIANMP---MKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAA 439

Query: 382 AG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI-HSFL 439
            G WD  A+KVRK +   G+ KKPG S IE++G + EF+AGD  H +   IY ++ H FL
Sbjct: 440 VGRWD-GASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYAMLDHLFL 498

Query: 440 KM 441
           ++
Sbjct: 499 EL 500



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 37/237 (15%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH--LGAITQ 181
           P    VSW++ +A + R     E  + F +MQ  G++PN    +++L+AC    L  +  
Sbjct: 50  PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109

Query: 182 GLWVHSYAKRYHLE-KNVILATAVVDMYSKCG------------HVHSALS--------- 219
           G  +H+Y ++  L+ +NV++ TA+VDMYSKCG            HV +++S         
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169

Query: 220 ----------VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                     +F+ +S +DA +W +MI G    G  +++LE F  M  +G +P   T ++
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229

Query: 270 VLTTCTHAKMVRDGLNLFENMSAV-YGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           VL  C  A +   GL L+ N   +    +  ++    ++D+ +R G +  A +  E+
Sbjct: 230 VLAAC--ANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQ 284


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 241/402 (59%), Gaps = 4/402 (0%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           +R + + + P  ++  +  + +    P++YT   ++KAC  L  + N G  VH +V K G
Sbjct: 85  LRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRN-GKIVHGYVEKLG 143

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
              + F+ + ++  Y+L  ++G AR +FDK P RDV+TW  M+    KMGD E A +LF 
Sbjct: 144 LQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFA 203

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MPERN  SW++++  Y++    KE + LF +M++ G+ PNE  +V+VL ACA +G +  
Sbjct: 204 EMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVL 263

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  +H ++ R   EKN+ +   ++DMY KCG +  A  +F+ +  +   +W+AMI+G+A 
Sbjct: 264 GRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAA 323

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G A+ +L LF++M+ +G +P   TF+ +L  C+H  MV  G   F +M+  YG+ P++E
Sbjct: 324 HGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIE 383

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+VDL +RAG+++EA +FI   M      +  VWGALL  C+++  +++     R L
Sbjct: 384 HYGCMVDLFSRAGLLQEAHEFI---MNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHL 440

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403
           +++   +   +V+  NIY EAG   +  +VRKL+ + G  +K
Sbjct: 441 SKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGTWEK 482



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 40/287 (13%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F  A+ +F+ +       W+  + +++      + +SLF +++E  + P+      VL A
Sbjct: 63  FSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKA 122

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+ L  +  G  VH Y ++  L+ N+ L   +V +Y+ CG +  A  VF+ +  +D   W
Sbjct: 123 CSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITW 182

Query: 233 N-------------------------------AMISGVAMNGDAKKSLELFDRMVKSGTQ 261
           N                               +MI G A  G +K++++LF  M  +G  
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL 242

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNL--FENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           P E T VAVL  C     +  G  +  F N S   G E  +     ++D+  + G +E+A
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRS---GYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +  +     +       W A+++    +G+ E    ++ K+   G+
Sbjct: 300 CRIFD----NMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGV 342



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 115/275 (41%), Gaps = 36/275 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q    K ++  +L+M D G  PN  T   ++ AC  +G L   G  +H    + 
Sbjct: 216 MIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLV-LGRRIHDFSNRS 274

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+ ++  V ++L++ Y     +  A  +FD   +R VV+W+ M+ G    G  E+A  LF
Sbjct: 275 GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM                                  G+KPN    + +L AC+H+G + 
Sbjct: 335 NKMI-------------------------------NTGVKPNAVTFIGILHACSHMGMVE 363

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMISG 238
           +G  +  S  + Y +   +     +VD++S+ G +  A      +     G  W A++ G
Sbjct: 364 KGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGG 423

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
             ++ + K + E    + K    P    +  VL+ 
Sbjct: 424 CKVHKNVKLAEEATRHLSK--LDPLNDGYYVVLSN 456


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 257/445 (57%), Gaps = 6/445 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y+   FP+ ++  +  M ++G  P+      ++ AC +LG L      +H  + K 
Sbjct: 163 IIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDL-GVAKAMHCFIEKS 221

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV S+L+  Y     +  A   F ++P +++V W TM+    +  + E  ++LF
Sbjct: 222 GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLF 281

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP+R+ VSW++++  ++RI  ++E L+ F +M+  G+ PN   L+S L+ACA  GA+ 
Sbjct: 282 QSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALD 341

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H+Y  +  + ++  L ++++DMYSKCG +  A+ +FE  + +D   W +++ G+A
Sbjct: 342 TGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLA 401

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  +K+L  F +M ++  QP + T V VL+ C HA ++  G   F++M  V+G+ P++
Sbjct: 402 MHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKV 461

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL R G ++EA   I   MG     +  +WGA LSACR++  +E+G    R+
Sbjct: 462 EHYGCMVDLLGRMGCLKEAYDLI---MGMPMEANEIIWGAFLSACRVHNNVELGEVAARR 518

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L  +   D    V+  N+Y +EA WD  +  +RK I + G+KK PGCS IEVNG V  FL
Sbjct: 519 LLGLDPRDPWARVMLSNMYAEEAKWD-RSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFL 577

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNL 444
            GDN H    EI  ++    K+  L
Sbjct: 578 VGDNSHPCYTEINSMVEKIEKLMRL 602



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 162/388 (41%), Gaps = 90/388 (23%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y+  L  G  PN +TF  L+KA ++ G     G  VHA VV+ GF    FV  +LL FY 
Sbjct: 79  YMQGLRAGLRPNGHTFMYLLKA-LVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYV 137

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +G  R +FD+     +V WT ++  Y           +    PE+           
Sbjct: 138 ACGLVGKGRQVFDEMRQPGLVLWTLIIRAY-----------VCVTFPEK----------- 175

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                     L LFR M+EVG+ P+   + +V++AC  LG +     +H + ++  +E +
Sbjct: 176 ---------ALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226

Query: 198 VILATAVVDMYSKCGH----------------------VHSAL---------SVFEGISN 226
             +++ ++  Y +CG                       +H ++          +F+ + +
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPD 286

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT----------- 275
           +D  +WN+MI G A  G  +++L  F  M  SG  P   T ++ L+ C            
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           HA + ++ +N   ++             + ++D+ ++ G +++A +  EE        D 
Sbjct: 347 HAYVDKNDMNRDGSLD------------SSLIDMYSKCGDIDKAVQIFEEST----RRDL 390

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAE 363
             W +++    ++G+ E     + K+ E
Sbjct: 391 FTWTSIVCGLAMHGRGEKALHYFSKMKE 418



 Score = 45.8 bits (107), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L  + Q    G++PN    + +L A      + +G  VH+   R     +  ++ A++  
Sbjct: 76  LLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGF 135

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y  CG V     VF+ +       W  +I         +K+LELF  M + G  P     
Sbjct: 136 YVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAI 195

Query: 268 VAVLTTC--THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
             V++ C       V   ++ F   S   G+E      + ++      G ++ A +F +E
Sbjct: 196 STVVSACGLLGDLGVAKAMHCFIEKS---GIEVDAFVSSTLISTYGECGSLDYAYRFFQE 252

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
                   +  VW  ++     +  +E+G ++++ + +  +  +++ +
Sbjct: 253 T----PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMI 296


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  298 bits (763), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 257/445 (57%), Gaps = 12/445 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAH---V 57
           +IRGY+     K S   Y  M   G  P ++TF  L KAC   G   + G+    H   +
Sbjct: 117 LIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKAC---GAKMDVGLGRQIHGQTI 173

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +  GFGED  V +S+++ Y     +   R +FD+ P+RDV++WT ++  Y K G+ E+A 
Sbjct: 174 LVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAG 233

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ELF+ +P ++ V+W+ +++ +++ +  +E +  F +MQE G++ +E  L+ V++ACA LG
Sbjct: 234 ELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLG 293

Query: 178 AITQGLWVHSYAKRYHL--EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           A     W+   A++     + +V++ +A++DMYSKCG V  A  VF+G+  ++  ++++M
Sbjct: 294 AAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSM 353

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G AM+G    +++LFD MVK+  +P   TF+ VLT C+HA MV  G  +FE M   YG
Sbjct: 354 ILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYG 413

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++P  +HY C+VDLL RAG ++EA + ++       GG   VWGALL ACRI+   ++  
Sbjct: 414 IKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGG---VWGALLGACRIHKSPDIAA 470

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV-NGV 414
                L E+       ++L  NIY   G   + + VRKL+   G++K P  S IE   G+
Sbjct: 471 IAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGM 530

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
           V EF +GD  H ++GEI + +   L
Sbjct: 531 VHEFFSGDMTHPRSGEIKQALEDLL 555



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 43/244 (17%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F ++   N   ++A++  Y      KE    +  M++ G+ P      ++  AC     
Sbjct: 102 IFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMD 161

Query: 179 ITQGLWVHS---------------------YAKRYHLE-----------KNVILATAVVD 206
           +  G  +H                      Y K   LE           ++VI  T ++ 
Sbjct: 162 VGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELIS 221

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
            Y K G++ SA  +F+G+  KD  AW  M+SG A N   ++++  F++M + G +  E T
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEIT 281

Query: 267 FVAVLTTCT------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            + V++ C       +A  +RD     E     +G +  +   + ++D+ ++ G V +A 
Sbjct: 282 LIGVISACAQLGAAKYADWIRDVAEKSE-----FGGKHSVVVGSALIDMYSKCGSVGDAY 336

Query: 321 KFIE 324
           +  +
Sbjct: 337 RVFQ 340



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 9/201 (4%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA--LSV 220
           ES +V+ L  C +L  I Q   VH+      L+++  +   ++   +K         LS+
Sbjct: 46  ESQIVTTLDGCKNLTQIKQ---VHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSI 102

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F  ++  +   +NA+I G  +    K+S E +  M K G  P   TF A+   C     V
Sbjct: 103 FNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDV 162

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
             G  +      V G    L     ++D+  + G +E   K  +E    +   D   W  
Sbjct: 163 GLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDE----MPNRDVISWTE 218

Query: 341 LLSACRIYGKIEVGNRVWRKL 361
           L+SA    G +E    ++  L
Sbjct: 219 LISAYVKSGNMESAGELFDGL 239


>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Glycine max]
          Length = 549

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 150/403 (37%), Positives = 242/403 (60%), Gaps = 8/403 (1%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           +G  P++Y+FP ++KA V L  + + G  +H   +  G    P VV+SL++ YS    + 
Sbjct: 121 LGMPPDSYSFPFVLKAVVCLSAV-HVGKQIHCQAIVSGLDSHPSVVTSLVQMYSSCAHLS 179

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRI 141
           +AR LFD +  +    W  M+ GY K+G+  NAR LFE MPE  R+ VSW+ +++ Y++ 
Sbjct: 180 SARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQT 239

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVI 199
               E ++LFR M    ++P+E  +++VL+ACA LGA+  G W+H+Y ++++  L K V 
Sbjct: 240 HSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVP 299

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L  +++DMY+K G +  A  +F+ + +K    W  +ISG+A++G  K++L++F  M K+ 
Sbjct: 300 LCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDVFSCMEKAR 359

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P E T +AVL+ C+H  +V  G N+F +M + YG+EP++EHY C++DLL RAG ++EA
Sbjct: 360 VKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQEA 419

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
            + +          +A VWG+LLSA   YG   +     R L+ +   +   + L  N Y
Sbjct: 420 MELVRVMP---SEANAAVWGSLLSASNRYGDAALAAEALRHLSVLEPHNCGNYSLLSNTY 476

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
              GW  EA  VRK++ +T  +K PG S +E+N  V EF+AGD
Sbjct: 477 AALGWWKEAAMVRKVMRDTCAEKVPGVSFVELNNRVYEFIAGD 519



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 38/255 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q + P  ++  +  ML    +P+      ++ AC  LG L+  G ++H ++ K 
Sbjct: 232 LISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQ-LGEWIHNYIEKH 290

Query: 61  G--FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
                +   + +SL++ Y+    +  AR LF     + ++TWTT++ G    G       
Sbjct: 291 NNKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHG------- 343

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDF-KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
                                    F KE L +F  M++  +KPNE  L++VL+AC+H+G
Sbjct: 344 -------------------------FGKEALDVFSCMEKARVKPNEVTLIAVLSACSHVG 378

Query: 178 AITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAM 235
            +  G  +  S   +Y +E  +     ++D+  + G++  A+ +   + S  +A  W ++
Sbjct: 379 LVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQEAMELVRVMPSEANAAVWGSL 438

Query: 236 ISGVAMNGDAKKSLE 250
           +S     GDA  + E
Sbjct: 439 LSASNRYGDAALAAE 453



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 111/252 (44%), Gaps = 7/252 (2%)

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           +L H   T   +  +  D+D +     +     +G    A  +F      +   ++ ++ 
Sbjct: 42  NLSHLQQTQGFMLTRGLDQDDILLARFIYTSASLGLSSYAYSVFISNHRPSIFFYNNVIW 101

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           A S  S+    +SLF  ++ +GM P+      VL A   L A+  G  +H  A    L+ 
Sbjct: 102 ALSS-SNPTRAISLFNAIRLLGMPPDSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDS 160

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           +  + T++V MYS C H+ SA  +F+G + K A  WNAM++G A  G+   +  LF+ M 
Sbjct: 161 HPSVVTSLVQMYSSCAHLSSARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMP 220

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
           +        T +    T TH+    + + LF  M  +  V+P       V+   A  G +
Sbjct: 221 EKDRDVVSWTTLISGYTQTHSP--NEAITLFRIM-LLQNVQPDEIAILAVLSACADLGAL 277

Query: 317 EEAE---KFIEE 325
           +  E    +IE+
Sbjct: 278 QLGEWIHNYIEK 289


>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
 gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
          Length = 438

 Score =  298 bits (762), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 164/422 (38%), Positives = 254/422 (60%), Gaps = 10/422 (2%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML +G  P++ T+P L KA   L   E  G+ +H HV+K GF  D FV +SL+  Y    
Sbjct: 1   MLQVGIYPDHLTYPFLAKATSRLLRKE-LGVSIHGHVIKSGFEIDRFVANSLIHMYGSCG 59

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
            +  AR +FD +P +++V+W +MVDGY K G  + AR LF+ MPER+  SWS ++  Y++
Sbjct: 60  DIVYARKVFDGTPVKNLVSWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAK 119

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
             ++ + +++F +M+  G K NE  +VSVL ACAHLGA+ +G  +H Y      E N++L
Sbjct: 120 SGNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVL 179

Query: 201 ATAVVDMYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            T+++DMY+KCG V  A +VF G+S    D   WNAMI G+A +G  K+SL+L+  M  +
Sbjct: 180 RTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDLYTEMQIA 239

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G +P E TF+ +L+ C H  +V+    +FE +    G+ P+ EHYAC+VD++ARAG V E
Sbjct: 240 GIKPDEITFLCLLSACAHGGLVKQASYVFEGLGK-NGMTPKTEHYACMVDVMARAGQVAE 298

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           A +F+ +         A++ GALLS C  +GK+++   + +KL E+       +V   N+
Sbjct: 299 AYQFLCQMP---LEPTASMLGALLSGCMNHGKLDLAELIGKKLIELDPEHDGRYVGLSNV 355

Query: 379 YKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           Y     WD EA  +R+ +   G+KK PG S +E++G    F+A D  H  + +IY ++ S
Sbjct: 356 YAIGRRWD-EARIMREAMERRGVKKTPGYSFLEMSGAHHRFIAHDKSHPSSEQIYTML-S 413

Query: 438 FL 439
           F+
Sbjct: 414 FI 415


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 151/445 (33%), Positives = 250/445 (56%), Gaps = 4/445 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+     ++  + +M +   EP+      ++ AC   G L ++G  +H  +++ 
Sbjct: 194 MIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNL-SYGKMIHDFIMEN 252

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               DP + S+L+  Y+    M  A  LF+K   +++V  T MV GY K+G  ENAR +F
Sbjct: 253 NIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVF 312

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +++ V WSA+++ Y+     +E L+LF +MQ +G+KP++  ++SV+TACAHLGA+ 
Sbjct: 313 NQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALD 372

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           Q  W+H +  +      + +  A+++MY+KCG +  A  +F+ +  K+  +W  MIS  A
Sbjct: 373 QAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFA 432

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+GDA  +L  F +M     +P   TFV VL  C+HA +V +G  +F +M   + + P+ 
Sbjct: 433 MHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKH 492

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C+VDL  RA ++ EA + +E         +  +WG+L++ACR++G+IE+G    ++
Sbjct: 493 VHYGCMVDLFGRANLLREALELVE---AMPLAPNVIIWGSLMAACRVHGEIELGEFAAKR 549

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+       HV   NIY +A    +  +VRKL+   G+ K+ GCS  E+N  + EFL 
Sbjct: 550 LLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLV 609

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
            D  H  A EIY  ++  +    LV
Sbjct: 610 ADRSHKHADEIYEKLYEVVSKLKLV 634



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 181/383 (47%), Gaps = 39/383 (10%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           +R   ++  P+ ++  Y  M   G   + ++FPPL+KA   +  L   G+ +H    K G
Sbjct: 94  LRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVE-GLEIHGLAAKLG 152

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  DPFV                                T +V  Y   G    AR +F+
Sbjct: 153 FDSDPFV-------------------------------QTGLVRMYAACGRIAEARLMFD 181

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           KM  R+ V+WS ++  Y +   F + L LF +M+   ++P+E  L +VL+AC   G ++ 
Sbjct: 182 KMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSY 241

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  +H +    ++  +  L +A+V MY+ CG +  AL++FE ++ K+  A  AM++G + 
Sbjct: 242 GKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSK 301

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
            G  + +  +F++MVK         + A+++    +   ++ LNLF  M ++ G++P   
Sbjct: 302 LGQIENARSVFNQMVKKDL----VCWSAMISGYAESDSPQEALNLFNEMQSL-GIKPDQV 356

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRK 360
               V+   A  G +++A K+I   +   G GG   +  AL+      G +E   R++ K
Sbjct: 357 TMLSVITACAHLGALDQA-KWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDK 415

Query: 361 LAEMGITDFSTHVLSYNIYKEAG 383
           +    +  ++  + ++ ++ +AG
Sbjct: 416 MPRKNVISWTCMISAFAMHGDAG 438



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 64/316 (20%), Positives = 134/316 (42%), Gaps = 18/316 (5%)

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD-FENARELFEKMPER 126
           + S+L    SL H       +     DR       +V     +    + A  +F  +P+ 
Sbjct: 26  LFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKP 85

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
                +  +   SR  + ++ L ++ +M+  G+  +      +L A + + ++ +GL +H
Sbjct: 86  ETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIH 145

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
             A +   + +  + T +V MY+ CG +  A  +F+ + ++D   W+ MI G   +G   
Sbjct: 146 GLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFN 205

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTC------THAKMVRDGLNLFENMSAVYGVEPQL 300
            +L LF+ M     +P E     VL+ C      ++ KM+ D +     M     V+P L
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFI-----MENNIVVDPHL 260

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +  + +V + A  G ++ A    E+    +   +     A+++     G+IE    V+ +
Sbjct: 261 Q--SALVTMYASCGSMDLALNLFEK----MTPKNLVASTAMVTGYSKLGQIENARSVFNQ 314

Query: 361 LAEMGITDFSTHVLSY 376
           + +  +  +S  +  Y
Sbjct: 315 MVKKDLVCWSAMISGY 330


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  297 bits (761), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 264/456 (57%), Gaps = 16/456 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+ Q+  P   V  Y  M++   EPN +T+  LI  C     L   G  VH  VV  
Sbjct: 87  MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCA-RSRLLREGEQVHGRVVAN 145

Query: 61  GFGEDPFVVSSLLEFYSLV---HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           G+  + FV +SL+  Y++      +  AR +FD+  DR++V+W +++ GY + GD + AR
Sbjct: 146 GYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGAR 205

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            +F++MPERN VSW+ ++A  ++I   K+ L LF +M+  G+K ++  LV+ L+ACA LG
Sbjct: 206 RIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 265

Query: 178 AITQGLWVHSYA-KRYHLEKNVILAT---AVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            +  G W+HSY  +R H     +L +   +++ MY+ CG +  A  VF G+  +   +W 
Sbjct: 266 DLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT 325

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGT---QPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +MI+G A  G A+++L +F  M + GT   +P   TF+ VL  C+HA  V  G + FE M
Sbjct: 326 SMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECM 385

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           +  +G+ P++EHY C+VDLL+RAG ++EA + IE     +   DA VWGALL  CRI+  
Sbjct: 386 NKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESM--PMKPNDA-VWGALLGGCRIHKN 442

Query: 351 IEVGNRVWRKLA-EMGITDFSTH-VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
            E+ + V +KLA E+     + + VL  N+Y  A    +   VR+ + E G++K  G S 
Sbjct: 443 AELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSW 502

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +++NGVV +F+AGD  H  A  +Y ++    + + L
Sbjct: 503 VQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKL 538



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 115/257 (44%), Gaps = 15/257 (5%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G       F  L++ C  +  L+     +H  ++  GF +  F++  LL FY     +  
Sbjct: 13  GLRALQQHFFSLLQTCDTIKKLKQ----IHTQIIVNGFSQKNFLLVKLLSFYITSGNLLN 68

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM----PERNAVSWSAIMAAYSR 140
           A  +F++  +     W  M+ G+ +        EL+ +M     E N  ++S ++   +R
Sbjct: 69  AHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCAR 128

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH---LEKN 197
               +E   +  ++   G   N    V V T+  +L AI  G      A+R     +++N
Sbjct: 129 SRLLREGEQVHGRVVANGYCTN----VFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRN 184

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           ++   +++  Y +CG V  A  +F+ +  ++  +W  MI+G A  G  K++L LF  M +
Sbjct: 185 IVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRR 244

Query: 258 SGTQPTETTFVAVLTTC 274
           +G +  +   VA L+ C
Sbjct: 245 AGVKLDQVALVAALSAC 261



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 103/221 (46%), Gaps = 15/221 (6%)

Query: 158 GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
           G++  +    S+L  C  +  + Q   +H+        +   L   ++  Y   G++ +A
Sbjct: 13  GLRALQQHFFSLLQTCDTIKKLKQ---IHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNA 69

Query: 218 LSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
             VFE I N     WN MI G + +    K +EL++RMV++  +P E T+  ++  C  +
Sbjct: 70  HKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARS 129

Query: 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG---MVEEAEKFIEEKMGGLGGGD 334
           +++R+G  +   + A  G    +     +V+L A AG    V +A +  +E +      D
Sbjct: 130 RLLREGEQVHGRVVA-NGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIV------D 182

Query: 335 ANV--WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
            N+  W +LL+     G ++   R++ ++ E  +  ++T +
Sbjct: 183 RNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMI 223


>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
          Length = 1280

 Score =  297 bits (761), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/439 (36%), Positives = 259/439 (58%), Gaps = 8/439 (1%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            +IRG+  +  P+ S+  Y+ ML  G  P++ T+P L+K+   L      G  +H  VVK 
Sbjct: 825  VIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSN-RKLGGSLHCSVVKS 883

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G   D F+ ++L+  Y       +AR LFD+ P +++VTW +++D Y K GD  +AR +F
Sbjct: 884  GLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVF 943

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
            ++M ER+ V+WS+++  Y +  ++ + L +F QM  +G  K NE  +VSV+ ACAHLGA+
Sbjct: 944  DEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGAL 1003

Query: 180  TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF--EGISNKDAGAWNAMIS 237
             +G  VH Y    HL   VIL T+++DMY+KCG +  A SVF    +   DA  WNA+I 
Sbjct: 1004 NRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIG 1063

Query: 238  GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
            G+A +G  ++SL+LF +M +S   P E TF+ +L  C+H  +V++  + F+++    G E
Sbjct: 1064 GLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES-GAE 1122

Query: 298  PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
            P+ EHYAC+VD+L+RAG+V++A  FI E      G   ++ GALL+ C  +G +E+   V
Sbjct: 1123 PKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTG---SMLGALLNGCINHGNLELAETV 1179

Query: 358  WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             +KL E+   +   +V   N+Y        A  +R+ + + G+KK  G S+++++G    
Sbjct: 1180 GKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHR 1239

Query: 418  FLAGDNRHAQAGEIYRVIH 436
            F+A D  H  + +IY V+ 
Sbjct: 1240 FIAHDKTHFHSDKIYAVLQ 1258



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/362 (19%), Positives = 144/362 (39%), Gaps = 47/362 (12%)

Query: 75   FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            F  +VHK       F  S DR+ +    +        D + A +   K+ +     W+ +
Sbjct: 777  FREMVHK-----GRFPVSVDRNYMLAVNVT------SDVDYAYKFLSKLSDPPNYGWNFV 825

Query: 135  MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
            +  +S   + ++ +S++ QM   G+ P+      ++ + + L     G  +H    +  L
Sbjct: 826  IRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGL 885

Query: 195  EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN--------------------- 233
            E ++ +   ++ MY       SA  +F+ + +K+   WN                     
Sbjct: 886  EWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDE 945

Query: 234  ----------AMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRD 282
                      +MI G    G+  K+LE+FD+M++ G ++  E T V+V+  C H   +  
Sbjct: 946  MSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNR 1005

Query: 283  GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            G  +   +  V+ +   +     ++D+ A+ G + +A          +   DA +W A++
Sbjct: 1006 GKTVHRYILDVH-LPLTVILQTSLIDMYAKCGSIGDAWSVFYR--ASVKETDALMWNAII 1062

Query: 343  SACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
                 +G I    +++ K+ E  I  D  T +         G   EA    K + E+G +
Sbjct: 1063 GGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAE 1122

Query: 402  KK 403
             K
Sbjct: 1123 PK 1124



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 57/317 (17%), Positives = 130/317 (41%), Gaps = 49/317 (15%)

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER----NAVSWSAIMAAYSRISD 143
           +++   + DV+T+T+++ G    G    A   + +M  +    N +++ A++    +   
Sbjct: 675 MYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGW 734

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-----WVHSYAKRYHLEKNV 198
             E L  FR+M+E  M+P+ +  +S++++      I  G       VH       +++N 
Sbjct: 735 SGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREMVHKGRFPVSVDRNY 794

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +LA  V         V  A      +S+     WN +I G + + + +KS+ ++ +M++ 
Sbjct: 795 MLAVNVT------SDVDYAYKFLSKLSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRF 848

Query: 259 GTQPTETTFVAVLTTCT-----------HAKMVRDGLNL--------------FENMSAV 293
           G  P   T+  ++ + +           H  +V+ GL                F + ++ 
Sbjct: 849 GLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASA 908

Query: 294 YGVEPQLEH-----YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
             +  ++ H     +  ++D  A++G V  A    +E    +   D   W +++      
Sbjct: 909 RKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDE----MSERDVVTWSSMIDGYVKR 964

Query: 349 GKIEVGNRVWRKLAEMG 365
           G+      ++ ++  MG
Sbjct: 965 GEYNKALEIFDQMMRMG 981



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           +N +I G+   G +++SL+L   M  +G +P++ T   +             L+L + M 
Sbjct: 477 YNNIIEGMCKEGRSEESLKLLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKKMR 536

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
             YG EP ++H   +V  L   G   +A K++++  G
Sbjct: 537 -FYGFEPWIKHTTFLVKKLCENGRAVDACKYLDDVAG 572



 Score = 41.6 bits (96), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 119/295 (40%), Gaps = 37/295 (12%)

Query: 20  DMLDMGFEPNNYT----FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           +M D G EP+ +T    +  L + C  +G L+          ++F +G +P++  +    
Sbjct: 499 EMKDAGVEPSQFTLNCIYGCLAERCDFVGALDLLKK------MRF-YGFEPWIKHTTF-- 549

Query: 76  YSLVHKMGTARALFDKSPDRD----------VVTWTTMVDGYGKMGDFENARELFEKMPE 125
             LV K+       D     D          +V  T  +DG  K    +   ELF  +  
Sbjct: 550 --LVKKLCENGRAVDACKYLDDVAGEGFLGHMVASTAAIDGLIKNEGVDRGLELFRDICA 607

Query: 126 R----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
                + +++  ++ A  +     E   LF +M   G+KP  +   S++      G I +
Sbjct: 608 NGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDR 667

Query: 182 GLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEGISNKDAG----AWNAM 235
           GL      + Y  EKN  VI  T+++      G    A+  +  +  KD       + A+
Sbjct: 668 GL--SCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMAL 725

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           I G+   G + ++L  F  M +   +P    +++++++   ++ +  G  +F  M
Sbjct: 726 IQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENINAGFGIFREM 780



 Score = 38.5 bits (88), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 72/161 (44%), Gaps = 10/161 (6%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +M D GF  + +T  P+++     G  E   + V   ++  G+  D  + + L+  +   
Sbjct: 204 EMRDCGFHFDKFTLTPVLQVYCNTGKSER-ALSVFNEILSRGW-LDEHISTILVVSFCKW 261

Query: 80  HKMGTARALFDKSPDRDV----VTWTTMVDGYGKMGDFENARELFEKMPE----RNAVSW 131
            ++  A  L +   +RD+     T+  ++ G+ K    + A +LFEKM       +   +
Sbjct: 262 GQVDKAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALY 321

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
             ++    +  D +  LSL+ +++  G+ P+   L  +L +
Sbjct: 322 DVLIGGLCKHKDLEMALSLYLEIKRSGIPPDRGILGKLLCS 362


>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
          Length = 467

 Score =  297 bits (760), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 264/456 (57%), Gaps = 16/456 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+ Q+  P   V  Y  M++   EPN +T+  LI  C     L   G  VH  VV  
Sbjct: 1   MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCA-RSRLLREGEQVHGRVVAN 59

Query: 61  GFGEDPFVVSSLLEFYSLV---HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           G+  + FV +SL+  Y++      +  AR +FD+  DR++V+W +++ GY + GD + AR
Sbjct: 60  GYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGAR 119

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            +F++MPERN VSW+ ++A  ++I   K+ L LF +M+  G+K ++  LV+ L+ACA LG
Sbjct: 120 RIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 179

Query: 178 AITQGLWVHSYA-KRYHLEKNVILAT---AVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            +  G W+HSY  +R H     +L +   +++ MY+ CG +  A  VF G+  +   +W 
Sbjct: 180 DLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT 239

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGT---QPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +MI+G A  G A+++L +F  M + GT   +P   TF+ VL  C+HA  V  G + FE M
Sbjct: 240 SMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECM 299

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           +  +G+ P++EHY C+VDLL+RAG ++EA + IE     +   DA VWGALL  CRI+  
Sbjct: 300 NKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESM--PMKPNDA-VWGALLGGCRIHKN 356

Query: 351 IEVGNRVWRKLA-EMGITDFSTH-VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
            E+ + V +KLA E+     + + VL  N+Y  A    +   VR+ + E G++K  G S 
Sbjct: 357 AELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSW 416

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +++NGVV +F+AGD  H  A  +Y ++    + + L
Sbjct: 417 VQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKL 452


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 149/423 (35%), Positives = 249/423 (58%), Gaps = 6/423 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY+Q  +   S+  +  M      P+      ++ ACV L   +  G  VHA +V +
Sbjct: 339 MMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFD-LGRSVHAFIVTY 397

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ ++LL+ Y+   K+  A   F++ P +   +W +M+DG+ + G  + AR+ F
Sbjct: 398 GMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFF 457

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            K+PE++ VSW+ ++ AY +   F E   +F +MQ   +KP+++ L+S+L++CA +GA+ 
Sbjct: 458 NKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALN 517

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+WV+ Y ++  +  + +L TA++DMY KCG V  A  +F  I  K+   W AM++  A
Sbjct: 518 HGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYA 577

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M G A ++++L+  M + G +P   TF+A+L  C+H  +V +G   F  + + Y + P +
Sbjct: 578 MEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTI 637

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C+VDLL R G +EE  KFIE         D ++W +L+ ACR +  +E+  + +++
Sbjct: 638 HHYGCMVDLLGRVGHLEETVKFIERMP---IEPDVSIWSSLMRACRSHHNVELAEQAFKQ 694

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+  T+   HVL  NIY +AG WD + +KVR  + ETG+ K+PG ++IE NGVV EF+
Sbjct: 695 LIEIDPTNNGAHVLLSNIYADAGRWD-DVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFV 753

Query: 420 AGD 422
           A +
Sbjct: 754 ASN 756



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/401 (27%), Positives = 194/401 (48%), Gaps = 43/401 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y+     + ++  + +ML  G  P+  T   L+  C  L  LE  G  +H ++V  
Sbjct: 205 MISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLE-MGKRLHLYIVDN 263

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR--DVVTWTTMVDGYGKMGDFENARE 118
                  +++ L++ YS   KM  A  L  +  +   DVV WTT+V GY K    + AR+
Sbjct: 264 KLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQ 323

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+KM ER+ VSW+ +M+ Y +   + E L LF+QM+   + P+E  LV+VL+AC HL  
Sbjct: 324 LFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLED 383

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
              G  VH++   Y +  +  L  A++D+Y+KCG +  AL  FE +  K A +WN+M+ G
Sbjct: 384 FDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDG 443

Query: 239 VAMNGDAKK-------------------------------SLELFDRMVKSGTQPTETTF 267
              +G   K                               S E+F +M  S  +P +TT 
Sbjct: 444 FCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTL 503

Query: 268 VAVLTTCTHAKMVRDGL--NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           +++L++C     +  G+  N++   + + G++  L     ++D+  + G VE A +   +
Sbjct: 504 ISLLSSCAKVGALNHGIWVNVYIEKNEI-GIDAMLG--TALIDMYGKCGCVEMAYEIFTQ 560

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +      +  VW A+++A  + G+      ++ ++ E G+
Sbjct: 561 II----EKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGV 597



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 169/414 (40%), Gaps = 80/414 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF----GMFVHAH 56
           ++   ++   P+  + CY  M+  G   +  TF  LI AC      +NF    G  VH  
Sbjct: 104 LLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACC-----KNFDVKLGSEVHGR 158

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           ++K GFG +  + ++L+  YS   K+     LF+K   RDV++W TM+  Y   G +   
Sbjct: 159 ILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMY--- 215

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
                                       +E L LF +M   G+ P+E  +VS+++ CA L
Sbjct: 216 ----------------------------REALDLFDEMLVSGVLPDEITMVSLVSTCAKL 247

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG------------------------ 212
             +  G  +H Y     L     L   +VDMYSKCG                        
Sbjct: 248 KDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTT 307

Query: 213 ---------HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
                     +  A  +F+ ++ +   +W  M+SG    G   +SLELF +M      P 
Sbjct: 308 LVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPD 367

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           E   V VL+ C H +    G ++   +   YG+         ++DL A+ G ++EA +  
Sbjct: 368 EVALVTVLSACVHLEDFDLGRSVHAFI-VTYGMLVDGFLGNALLDLYAKCGKLDEALRTF 426

Query: 324 EEKMGGLGGGDANVWGALLSA-CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           E+    L    A  W ++L   CR  G ++     + K+ E  I  ++T V +Y
Sbjct: 427 EQ----LPCKSAASWNSMLDGFCR-SGGVDKARDFFNKIPEKDIVSWNTMVNAY 475



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 42/328 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH++      DP + S +L F   V+ +  A  +   S + + + W T+++       
Sbjct: 54  IHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLEN------ 107

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                +L E  P+                    EVL  +  M   G+  + S    ++ A
Sbjct: 108 -----KLKEGCPQ--------------------EVLECYYHMVTQGVLLDISTFHFLIHA 142

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C     +  G  VH    +    +N  L   ++ +YSKCG +     +FE ++++D  +W
Sbjct: 143 CCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISW 202

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N MIS   + G  +++L+LFD M+ SG  P E T V++++TC   K +  G  L      
Sbjct: 203 NTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLH----- 257

Query: 293 VYGVEPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
           +Y V+ +L        C+VD+ ++ G ++EA   +          D  +W  L+S     
Sbjct: 258 LYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSR--CDESEVDVVLWTTLVSGYVKS 315

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            KI+   +++ K+ E  +  ++T +  Y
Sbjct: 316 NKIDKARQLFDKMNERSLVSWTTMMSGY 343


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  297 bits (760), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 163/447 (36%), Positives = 258/447 (57%), Gaps = 8/447 (1%)

Query: 1   MIRGYMQANFPKLS--VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           ++ GY +   P  +  VFC + +   G+ PN  T      A   +G L   G  VH  VV
Sbjct: 203 LVDGYARGGLPDEAWRVFCRMVVAGGGW-PNEVTLVAAASAAGQIG-LLGLGRMVHQCVV 260

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + G      + ++L++ +     + +A+ +FD  P +DV +WT+MV  Y K GD ENA +
Sbjct: 261 ESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLENAGK 320

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+++P RNAVSWS ++AAYS+ +  +E + +F  M   G++P ++ LVSVL+ACA LG 
Sbjct: 321 LFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGC 380

Query: 179 ITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +  G  ++ +Y   + +E  V L+ A +DM++KCG V +A  +F  + +K+  +WN MI 
Sbjct: 381 LDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIV 440

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A++G ++++L LF +    G  P E T++ VL+ C+H+ +V +G   F+ M  VYG+E
Sbjct: 441 AHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVYGIE 500

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+ EHYAC++DLL + G++EEA    E       G D   WGALL+ACR++G +E+G   
Sbjct: 501 PRAEHYACMIDLLGKVGLLEEA---FEVARSMPVGADEAGWGALLNACRMHGNVEIGKCA 557

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             KL  +  +D   +VL   IY       +   +R ++ + G+KK PGCS IEV+G   E
Sbjct: 558 ADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHE 617

Query: 418 FLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           FLA D  HA + +IY  + +    S L
Sbjct: 618 FLAADVSHAHSEDIYAALENIYLHSKL 644



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 172/401 (42%), Gaps = 75/401 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVK 59
           M+RG+++A  P  ++  +  +L      +  T    +KA      P E     +H    K
Sbjct: 103 MMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKAATTSSSPAEA----IHCVAFK 158

Query: 60  FGF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            GF G+   V ++L+  Y+    +  AR LFD+  DRDVV+WTT+VDGY + G  + A  
Sbjct: 159 RGFIGQSVLVGNALVHMYASSMSLPDARKLFDEMADRDVVSWTTLVDGYARGGLPDEAWR 218

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F +M          ++A                     G  PNE  LV+  +A   +G 
Sbjct: 219 VFCRM----------VVAG--------------------GGWPNEVTLVAAASAAGQIGL 248

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  VH       +  +V L  A+VDM+ KCG V SA  +F+G+  KD  +W +M+S 
Sbjct: 249 LGLGRMVHQCVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSA 308

Query: 239 VAMNGD-------------------------------AKKSLELFDRMVKSGTQPTETTF 267
            A  GD                                ++++ +F+ M+ +G +P + T 
Sbjct: 309 YAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATL 368

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V+VL+ C     +  G  L++     + VE  +      +D+ A+ G V  A +      
Sbjct: 369 VSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNME 428

Query: 328 GGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGI 366
                 D NV  W  ++ A  ++G+ E    +++K   +GI
Sbjct: 429 ------DKNVVSWNTMIVAHALHGQSEEALHLFQKFKAIGI 463


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/411 (38%), Positives = 239/411 (58%), Gaps = 35/411 (8%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G +PN+ T   ++ AC  L  LE  G  +H + ++ GF  +  V ++L            
Sbjct: 317 GIKPNSITMVSVLPACAHLFALEQ-GQQIHGYAIRSGFESNDVVGNAL------------ 363

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                              V+ Y K G+  +A +LFE+MP++N V+W+AI++ YS+    
Sbjct: 364 -------------------VNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHP 404

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E L+LF +MQ  G+KP+   +VSVL ACAH  A+ QG  +H Y  R   E NV++ T +
Sbjct: 405 HEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGL 464

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           VD+Y+KCG+V++A  +FE +  +D  +W  MI    ++G  + +L LF +M ++GT+   
Sbjct: 465 VDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDH 524

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             F A+LT C+HA +V  GL  F+ M + YG+ P+LEHYAC+VDLL RAG ++EA   I+
Sbjct: 525 IAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIK 584

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
                    DANVWGALL ACRI+  IE+G +  + L E+   +   +VL  NIY EA  
Sbjct: 585 NMS---LEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQR 641

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
             +  K+RK++ E G+KK+PGCSV+ V+  V+ FL GD  H Q+ +IY ++
Sbjct: 642 WEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAML 692



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/378 (30%), Positives = 183/378 (48%), Gaps = 45/378 (11%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I GY++  F   ++  Y  M   G  P+   F  +IKAC     L+  G  VH  ++  G
Sbjct: 92  IIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQA-GRKVHEDIIARG 150

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F                               + DV+  T +   Y K G  ENAR++F+
Sbjct: 151 F-------------------------------ESDVIVGTALASMYTKCGSLENARQVFD 179

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MP+R+ VSW+AI+A YS+     E L+LF +MQ  G+KPN S LVSV+  CAHL A+ Q
Sbjct: 180 RMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ 239

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  +H YA R  +E +V++   +V+MY+KCG+V++A  +FE +  +D  +WNA+I G ++
Sbjct: 240 GKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSL 299

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           N    ++L  F+RM   G +P   T V+VL  C H   +  G  +       Y +    E
Sbjct: 300 NSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHG-----YAIRSGFE 354

Query: 302 HYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
               V    V++ A+ G V  A K  E     +   +   W A++S    +G       +
Sbjct: 355 SNDVVGNALVNMYAKCGNVNSAYKLFER----MPKKNVVAWNAIISGYSQHGHPHEALAL 410

Query: 358 WRKLAEMGITDFSTHVLS 375
           + ++   GI   S  ++S
Sbjct: 411 FIEMQAQGIKPDSFAIVS 428



 Score =  184 bits (467), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 118/365 (32%), Positives = 177/365 (48%), Gaps = 37/365 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q   P  ++  + +M   G +PN+ T   ++  C  L  LE  G  +H + ++ 
Sbjct: 192 IIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ-GKQIHCYAIRS 250

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  VV+ L                               V+ Y K G+   A +LF
Sbjct: 251 GIESDVLVVNGL-------------------------------VNMYAKCGNVNTAHKLF 279

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+MP R+  SW+AI+  YS  S   E L+ F +MQ  G+KPN   +VSVL ACAHL A+ 
Sbjct: 280 ERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALE 339

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG  +H YA R   E N ++  A+V+MY+KCG+V+SA  +FE +  K+  AWNA+ISG +
Sbjct: 340 QGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYS 399

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   ++L LF  M   G +P     V+VL  C H   +  G  +    +   G E  +
Sbjct: 400 QHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQI-HGYTIRSGFESNV 458

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                +VD+ A+ G V  A+K  E     +   D   W  ++ A  I+G  E    ++ K
Sbjct: 459 VVGTGLVDIYAKCGNVNTAQKLFER----MPEQDVVSWTTMILAYGIHGHGEDALALFSK 514

Query: 361 LAEMG 365
           + E G
Sbjct: 515 MQETG 519



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 5/228 (2%)

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           N  +  +     NAV W   +  Y +   + + L L+ QMQ  G+ P++   +SV+ AC 
Sbjct: 72  NQTQFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACG 131

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
               +  G  VH        E +VI+ TA+  MY+KCG + +A  VF+ +  +D  +WNA
Sbjct: 132 SQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNA 191

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I+G + NG   ++L LF  M  +G +P  +T V+V+  C H   +  G  +    +   
Sbjct: 192 IIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQI-HCYAIRS 250

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G+E  +     +V++ A+ G V  A K  E     +   D   W A++
Sbjct: 251 GIESDVLVVNGLVNMYAKCGNVNTAHKLFER----MPIRDVASWNAII 294



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 34/238 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q   P  ++  +++M   G +P+++    ++ AC     LE  G  +H + ++ 
Sbjct: 394 IISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQ-GKQIHGYTIRS 452

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V + L++ Y+    + TA+ LF++ P++DVV+WTTM+  YG  G  E+A  LF
Sbjct: 453 GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALF 512

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            K                               MQE G K +     ++LTAC+H G + 
Sbjct: 513 SK-------------------------------MQETGTKLDHIAFTAILTACSHAGLVD 541

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMI 236
           QGL +       Y L   +     +VD+  + GH+  A  + + +S   DA  W A++
Sbjct: 542 QGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  296 bits (759), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 163/436 (37%), Positives = 256/436 (58%), Gaps = 7/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY QA   + +   + +M   GF  + +T   L+ AC   G LE FG  VH  ++  
Sbjct: 117 MIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLE-FGRLVHCLMLVS 175

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  +  +L++ YS    +  AR  F+  P + VV+WT+M+    K G  + AR  F
Sbjct: 176 GSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWF 235

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPERN VSW+ +++ Y +   + E L L++QMQ  G  P+E+ LV VL+AC  +G +T
Sbjct: 236 DHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLT 295

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y +      ++ L  +++DMY+KCG V +A+ +F  + N++  +WN +I G+A
Sbjct: 296 VGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLA 355

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A  ++  F  MV++ T P   TFVA+L++C+H  ++  G + FE+M  VY V+ ++
Sbjct: 356 MHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEV 414

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G +E+A   I+E        D  VWGALL ACRI+G +++G +V ++
Sbjct: 415 EHYACMVDLLGRRGHLEKAVCLIKEMP---MKPDVVVWGALLGACRIHGNVKIGKQVIKQ 471

Query: 361 LAEM-GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+ GI+     ++S  +Y+   W+ +  ++RKL+ E G +K  G S IE+N  + EF 
Sbjct: 472 LLELEGISGGLFVLISNLLYETNQWE-DMKRLRKLMKERGTRKDMGVSSIEINNSIHEFG 530

Query: 420 AGDNRHAQAGEIYRVI 435
             D RH  + EIY V+
Sbjct: 531 VEDIRHESSSEIYAVV 546



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 153/362 (42%), Gaps = 76/362 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           + R Y  ++ P+ ++  +  ML  G  PN +T P ++KAC      +N  + VH   +K 
Sbjct: 16  ITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDN-ALAVHGVALKL 74

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV ++LL  Y+    +G +R  FD+   R+VV+W +M+ GY + G         
Sbjct: 75  GFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAG--------- 125

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                 D +E  +LF +M+  G   +E  L S+L AC+  G + 
Sbjct: 126 ----------------------DTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLE 163

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKC----------------------------- 211
            G  VH          ++IL  A+VDMYSKC                             
Sbjct: 164 FGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQT 223

Query: 212 --GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
             G V +A   F+ +  ++  +WN MIS     G   ++L+L+ +M   G  P E T V 
Sbjct: 224 KHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVP 283

Query: 270 VLTTC------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           VL+ C      T  KMV   L + +N+       P +     ++D+ A+ G V+ A +  
Sbjct: 284 VLSACGRIGDLTVGKMVH--LYIRDNIH-----NPDISLINSLLDMYAKCGQVDTAIRLF 336

Query: 324 EE 325
            E
Sbjct: 337 RE 338



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 112/258 (43%), Gaps = 5/258 (1%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+ + + + V ++ I  AY      +E L L R M   G+ PNE  L  V+ AC    A
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
               L VH  A +      V +A A++  Y+  G +  +   F+ ++ ++  +WN+MI G
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGG 120

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A  GD +++  LF  M + G    E T  ++L  C+    +  G  L   +  V G   
Sbjct: 121 YAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFG-RLVHCLMLVSGSPV 179

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            L     +VD+ ++ G +  A +  E     +       W ++L A   +G ++     +
Sbjct: 180 DLILGGALVDMYSKCGDLCMARRCFEM----MPIKSVVSWTSMLCAQTKHGSVDAARCWF 235

Query: 359 RKLAEMGITDFSTHVLSY 376
             + E     ++T +  Y
Sbjct: 236 DHMPERNTVSWNTMISCY 253


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 160/444 (36%), Positives = 255/444 (57%), Gaps = 12/444 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y +      S+  Y  ML+    P ++TF  L    ++  P  + G  +H H   F
Sbjct: 83  LIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFS--LLKNP--SLGSQLHLHAFLF 138

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V ++++  Y     +  AR +FD+ P RDVVTWT ++  Y + GD ++A ELF
Sbjct: 139 GFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELF 198

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +P ++ V+W++++  YS+ +  K+ L  FR+M+E G+  +E  LV  ++ACA LG   
Sbjct: 199 VGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSG 258

Query: 181 QGLWVHSYAK--RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
              W+   A+  R+    NV + +A++DMYSKCG+V  A +VF+G+   +  ++++MI G
Sbjct: 259 YADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVG 318

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A++G A+ +++LF  M+++G +P   TFV + T C+HA MV  G  LF  M   YGV P
Sbjct: 319 FAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSP 378

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
             +HYAC+ DLL RAG +E+A + ++       GG   VWGALL A  I+G  +V     
Sbjct: 379 TADHYACMADLLGRAGHLEKALQLVQTMPMEPNGG---VWGALLGASHIHGNPDVAEIAS 435

Query: 359 RKLAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEV-NGVVE 416
           R L E+   +   ++L    Y   A WD + ++VRKL+ E  ++K PGCS +E  NG++ 
Sbjct: 436 RSLFELEPDNLGNYLLLSKTYALAAKWD-DVSRVRKLMREKQLRKNPGCSWVEAKNGIIH 494

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLK 440
           EF AGD +H +  EI + +   L+
Sbjct: 495 EFFAGDVKHPEINEIKKALDDLLQ 518


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/416 (38%), Positives = 245/416 (58%), Gaps = 5/416 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  M  +  +PN  TFP  IK+C  L  L + G   H   + FGF  D FV S+L++ YS
Sbjct: 64  FSSMRKLSLKPNRSTFPCAIKSCSALLDLHS-GRQAHQQALIFGFEPDLFVSSALVDMYS 122

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++  AR LFD+   R++V+WT+M+ GY +  D   A  +F+ M ER+ +SW++I+A 
Sbjct: 123 KCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAV 182

Query: 138 YSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           Y++     E + +F +M + G +  N   L +VL ACAH G+   G  +H    +  LE 
Sbjct: 183 YAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES 242

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           NV + T+++DMY KCG V  A   F+ +  K+  +W+AM++G  M+G AK++LE+F  M 
Sbjct: 243 NVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMN 302

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
            +G +P   TFV+VL  C+HA ++ +G + F+ MS  + VEP +EHY C+VDLL RAG +
Sbjct: 303 MAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYL 362

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +EA   I+   G     D  VWGALL ACR++  +++G    RKL E+   +   +VL  
Sbjct: 363 KEAFDLIK---GMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLS 419

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           NIY +AG   +  ++R L+  +G+ K PG S++++ G V  FL GD  H Q  +IY
Sbjct: 420 NIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIY 475



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 38/285 (13%)

Query: 115 NARELFEKMPER-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           N   LF K  ++ N  SW++++A  +R  D  E L  F  M+++ +KPN S     + +C
Sbjct: 27  NLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC 86

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV------------------- 214
           + L  +  G   H  A  +  E ++ +++A+VDMYSKCG +                   
Sbjct: 87  SALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWT 146

Query: 215 ------------HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQ 261
                       H AL VF+G++ +D  +WN++I+  A NG + +S+E+F RMVK G   
Sbjct: 147 SMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN 206

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
               T  AVL  C H+   R G  + + +  + G+E  +     ++D+  + G VE A K
Sbjct: 207 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM-GLESNVFVGTSIIDMYCKCGKVEMARK 265

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             +     +   +   W A+++   ++G  +    V+ ++   G+
Sbjct: 266 AFDR----MREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGV 306


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/455 (36%), Positives = 243/455 (53%), Gaps = 38/455 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML +G  PN YT+P ++KAC  L  +E+ G+ +H+H   FG   D FV ++L++FY+
Sbjct: 97  YHSMLHLGVRPNKYTYPFVLKACSGLLAIED-GVEIHSHAKMFGLESDVFVCTALVDFYA 155

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDG---YGKMGD---------------------- 112
               +  A+ LF     RDVV W  M+ G   YG   D                      
Sbjct: 156 KCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVG 215

Query: 113 -------FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
                     AR++F+ M  RN VSWSA++  Y      KE L +FR MQ  G+ P+ + 
Sbjct: 216 VLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTT 275

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           ++ VL AC+HL A+  G   H Y        + ++  A++DMYSKCG +  A  VF  + 
Sbjct: 276 MLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD 335

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
             D  +WNAMI G  ++G   ++L LF  ++  G +P + TF+ +L++C+H+ +V +G  
Sbjct: 336 RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRL 395

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
            F+ MS  + + P++EH  C+VD+L RAG+++EA  FI          D  +W ALLSAC
Sbjct: 396 WFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMP---FEPDVRIWSALLSAC 452

Query: 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKP 404
           RI+  IE+G  V +K+  +G       VL  NIY  AG WD +A  +R    + G+KK P
Sbjct: 453 RIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWD-DAAHIRITQKDWGLKKIP 511

Query: 405 GCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           GCS IE+NG+V  F+ GD  H Q  +I R +   L
Sbjct: 512 GCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 546



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 151/328 (46%), Gaps = 46/328 (14%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           NNY    L++AC+    L      +H H +K     D  V+  L   Y   +++  AR L
Sbjct: 9   NNYLH--LLEACIQSKSLTE-AKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRL 65

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           FD+ P+  V+ W  ++  Y   G F+ A                               +
Sbjct: 66  FDEIPNPSVILWNQIIRAYAWNGPFDGA-------------------------------I 94

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
            L+  M  +G++PN+     VL AC+ L AI  G+ +HS+AK + LE +V + TA+VD Y
Sbjct: 95  DLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFY 154

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG +  A  +F  +S++D  AWNAMI+G ++ G    +++L  +M + G  P  +T V
Sbjct: 155 AKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIV 214

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            VL TC      R    +F+    V GV  ++   A +   +A   M E  + F   +M 
Sbjct: 215 GVLPTCQCLLYAR---KIFD----VMGVRNEVSWSAMIGGYVASDCMKEALDIF---RMM 264

Query: 329 GLGGGDANVWGAL--LSACRIYGKIEVG 354
            L G D ++   L  L AC     ++ G
Sbjct: 265 QLSGIDPDLTTMLGVLPACSHLAALQHG 292



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/265 (21%), Positives = 119/265 (44%), Gaps = 34/265 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+ ++  K ++  +  M   G +P+  T   ++ AC  L  L++ G   H +++  
Sbjct: 244 MIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQH-GFCSHGYLIVR 302

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  + ++L++ YS   K+  AR +F++    D+V+W  M+ GYG  G         
Sbjct: 303 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHG--------- 353

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E L LF  +  +G+KP++   + +L++C+H G + 
Sbjct: 354 ----------------------LGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVM 391

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G LW  + ++ + +   +     +VD+  + G +  A      +    D   W+A++S 
Sbjct: 392 EGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSA 451

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPT 263
             ++ + +   E+  ++   G + T
Sbjct: 452 CRIHKNIELGEEVSKKIQSLGPEST 476



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 98/208 (47%), Gaps = 5/208 (2%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           + +L AC    ++T+   +H +  +     +  +   +  +Y  C  V  A  +F+ I N
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
                WN +I   A NG    +++L+  M+  G +P + T+  VL  C+    + DG+ +
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEI 131

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
             + + ++G+E  +     +VD  A+ G++ EA++        +   D   W A+++ C 
Sbjct: 132 HSH-AKMFGLESDVFVCTALVDFYAKCGILVEAQRL----FSSMSHRDVVAWNAMIAGCS 186

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           +YG  +   ++  ++ E GI   S+ ++
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIV 214


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 170/444 (38%), Positives = 248/444 (55%), Gaps = 70/444 (15%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV------------------- 68
           PN+YTFP L+K C  +G + + G  +HA ++KFGF  D FV                   
Sbjct: 8   PNHYTFPLLVKVCWEIGSIGD-GEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARA 66

Query: 69  ------VSSLLEFYSLVH------KMGTARALFDKSPDRD-------------------- 96
                 +S L+ + S++       ++G AR LF++ P+RD                    
Sbjct: 67  MFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAA 126

Query: 97  -----------VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                      +V+W  M+DGY ++ + E A ELF  MP RN VSW+ ++A Y RI D+ 
Sbjct: 127 EDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYD 186

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH-LEKNVILATAV 204
           E L +F +M    M PNE+ LVSVLTACAHLG + +G W+HSY K    +E +V+L+TA+
Sbjct: 187 ECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTAL 245

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           + MY+KCG +  A  VF+ +SN+   +WN+MI G  M+G A K+LE+F  M K G  P +
Sbjct: 246 LTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPND 305

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+ VL+ C H+ M+ +G   F+ M   Y +EP++EHY C+VDLL RAG++++ E+ I 
Sbjct: 306 ATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELI- 364

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
            KM   GG    +WGALLSACR +   E+   V ++L E+   D   ++L  NIY   G 
Sbjct: 365 RKMPMEGG--TALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGK 422

Query: 384 WDMEANKVRKLISETGMKKKPGCS 407
           WD +   VRK++ E G+ K  G S
Sbjct: 423 WD-DVEIVRKMMKERGLTKTTGLS 445


>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 160/409 (39%), Positives = 242/409 (59%), Gaps = 10/409 (2%)

Query: 7   QANFPKL-SVFCYLDMLDMGFE--PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG 63
            ++FP     F + +++ M     P+N+TFPPL+KA   L   +  G  +HAHV   GF 
Sbjct: 82  HSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYD-LGQCLHAHVTALGFY 140

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
               V   LLE YS   KM  A  +FD+   R+VV W  M++G+ KMGD E   +LF++M
Sbjct: 141 RHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRM 200

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
            +R+ VSW+ +++  ++     E   +FR+M E G +P+++ LV+VL  CA LG +  G 
Sbjct: 201 GQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVLPVCARLGDVDAGE 260

Query: 184 WVHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
           W+HSYA    L + VI +  ++VD Y KCG++ +A  VF  ++ K+  +WNAMISG+ +N
Sbjct: 261 WIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNVVSWNAMISGLGLN 320

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G  +  +ELF++M + G  P+++TFV VL  C HA  V  G  +F++M+  + + P+LEH
Sbjct: 321 GKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEH 380

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y CVVDLL R G V+EA   I   M  +   +A +WGALLSACR +G  EV     ++L 
Sbjct: 381 YGCVVDLLGRCGHVKEAYDLIRN-MPLM--PNAALWGALLSACRTHGDREVAEIAAKELV 437

Query: 363 EMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
            +   +   +VL  N+Y +E  W+ E  KVR L+   G+KK PG S ++
Sbjct: 438 RLEPGNSGNYVLLSNVYAEERKWN-EVEKVRVLMQGVGIKKNPGQSALQ 485


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 155/446 (34%), Positives = 257/446 (57%), Gaps = 11/446 (2%)

Query: 1   MIRGYMQANFPKLS----VFCYLD-MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           MI GY Q+ +        VF  L+ M   G  PN  TF  +++AC   G LE  G  +HA
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQ-GRQIHA 388

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            + K GF  D  + +++   Y+    +  A  +F K  +++VV WT+ +  Y K GD  +
Sbjct: 389 ELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSS 448

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ++F +MP RN VSW+ ++A Y++  D  +V  L   M+  G +P+   ++++L AC  
Sbjct: 449 AEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGA 508

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L  + +G  VH+ A +  LE + ++AT+++ MYSKCG V  A +VF+ +SN+D  AWNAM
Sbjct: 509 LAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAM 568

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ++G   +GD  ++++LF RM+K    P E T  AV++ C+ A +V++G  +F  M   + 
Sbjct: 569 LAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFK 628

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P+ +HY C+VDLL RAG ++EAE+FI+         D +VW ALL AC+ +  +++  
Sbjct: 629 MTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMP---CEPDISVWHALLGACKSHNNVQLAE 685

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           R    + E+  +  S ++   NIY +AG WD ++ KVR+++ + G+KK  G S IE++G 
Sbjct: 686 RAAHHILELEPSYASVYITLSNIYAQAGRWD-DSTKVRRVMDDRGLKKDRGESSIEIDGR 744

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLK 440
           +  F+A D  H +   I+  + +  K
Sbjct: 745 IHTFVAEDCAHPEIDAIHAELETLTK 770



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 172/381 (45%), Gaps = 42/381 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y   N P  +   +  M D   EPN  TF  ++KAC     LE  G  +H      
Sbjct: 128 MIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEK-GRKIH------ 180

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                           ++V  MG          + DV   T ++  Y K G+   A E+F
Sbjct: 181 ----------------TIVKAMGM---------ETDVAVATALITMYSKCGEISVACEVF 215

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM ERN VSW+AI+ A ++     E   L+ QM + G+ PN    VS+L +C    A+ 
Sbjct: 216 HKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALN 275

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +HS+     LE ++I+A A++ MY KC  V  A  +F+ +S +D  +W+AMI+G A
Sbjct: 276 RGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYA 335

Query: 241 MNGDAKKS-----LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
            +G   K       +L +RM + G  P + TF+++L  CT    +  G  +   +S V G
Sbjct: 336 QSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV-G 394

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            E        + ++ A+ G + EAE+   +    +   +   W + LS     G +    
Sbjct: 395 FELDRSLQTAIFNMYAKCGSIYEAEQVFSK----MANKNVVAWTSFLSMYIKCGDLSSAE 450

Query: 356 RVWRKLAEMGITDFSTHVLSY 376
           +V+ ++    +  ++  +  Y
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGY 471



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 185/397 (46%), Gaps = 53/397 (13%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L +A  +LG ++  G+ V+++   +G   +    +   E   +VHK      L +   + 
Sbjct: 37  LREAIQLLGIIKQRGLLVNSNT--YGCVIEHCAKARRFEDGKMVHKQ-----LDELGVEI 89

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D+    ++++ Y K  D  +A ++F +M  R+ V+WS+++AAY+  +   +    F +M 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           +  ++PN    +S+L AC +   + +G  +H+  K   +E +V +ATA++ MYSKCG + 
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEIS 209

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  VF  ++ ++  +W A+I   A +    ++ EL+++M+++G  P   TFV++L +C 
Sbjct: 210 VACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
             + +  G  +  ++S   G+E  +     ++ +  +   V+EA +  +     +   D 
Sbjct: 270 TPEALNRGRRIHSHISE-RGLETDMIVANALITMYCKCNSVQEAREIFDR----MSKRDV 324

Query: 336 NVWGAL----------------------------------------LSACRIYGKIEVGN 355
             W A+                                        L AC  +G +E G 
Sbjct: 325 ISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGR 384

Query: 356 RVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKV 391
           ++  +L+++G   D S     +N+Y + G   EA +V
Sbjct: 385 QIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 161/425 (37%), Positives = 247/425 (58%), Gaps = 8/425 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  M  +G   +N+T P ++K+C  L  +   G  VH   ++ G   D +V +SL++ Y 
Sbjct: 169 YARMHFLGLLGDNFTLPFVLKSCADLSRV-CMGRCVHGQGLRVGLEGDFYVGASLIDMYV 227

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +G AR LFDK   RD+ +W  ++ GY K G+   A +LFE+M  RN VSW+A+++ 
Sbjct: 228 KCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISG 287

Query: 138 YSRISDFKEVLSLFRQMQEVG--MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           Y++    ++ L LF +M + G  MKPN   +VSVL ACA   A+ +G  +H +A    L 
Sbjct: 288 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFD 253
            N  + TA+  MY+KC  +  A   F+ I+   K+  AWN MI+  A +G   +++ +F+
Sbjct: 348 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 407

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M+++G QP   TF+ +L+ C+H+ ++  GLN F +M  ++ VEP++EHYACVVDLL RA
Sbjct: 408 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRA 467

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G + EA++ I +     G    +VWGALL+ACR +  +E+     R+L  +   +   +V
Sbjct: 468 GRLVEAKELISQMPMQAG---PSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYV 524

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y EAG   E  K+R L+   GMKK PGCS IE+NG    F+  D  H QA EIY+
Sbjct: 525 LLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYK 584

Query: 434 VIHSF 438
            + + 
Sbjct: 585 FLEAL 589



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 154/375 (41%), Gaps = 79/375 (21%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR---ISDFKEVLSLFRQMQEVGM 159
           MV  Y   GD ++A  +F+++   +++ +++I+ AY+R          L  + +M  +G+
Sbjct: 118 MVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGL 177

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
             +   L  VL +CA L  +  G  VH    R  LE +  +  +++DMY KCG +  A  
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK 237

Query: 220 VFEGISNKDAGAWN-------------------------------AMISGVAMNGDAKKS 248
           +F+ +  +D  +WN                               AMISG   NG A+++
Sbjct: 238 LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQA 297

Query: 249 LELFDRMVKSGTQ--PTETTFVAVLTTCTHAKMVRDGLNL--FEN-------------MS 291
           L LFD M++ G++  P   T V+VL  C  +  +  G  +  F N             ++
Sbjct: 298 LGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALA 357

Query: 292 AVYGVEPQLEHYACVVDLLARAG--------MVE---------EAEKFIEEKMGGLGGGD 334
            +Y     L    C  D++A+ G        M+          EA    E  +      D
Sbjct: 358 GMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPD 417

Query: 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMG-ITDFSTHVLSY----NIYKEAGWDMEAN 389
           A  +  LLS C   G I+ G        +MG I      V  Y    ++   AG  +EA 
Sbjct: 418 AVTFMGLLSGCSHSGLIDAG---LNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEA- 473

Query: 390 KVRKLISETGMKKKP 404
             ++LIS+  M+  P
Sbjct: 474 --KELISQMPMQAGP 486



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 38/244 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE--PNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY Q  F + ++  + +ML  G E  PN  T   ++ AC     LE  G  +H    
Sbjct: 284 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALER-GRRIHDFAN 342

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFD--KSPDRDVVTWTTMVDGYGKMGDFENA 116
             G   +  V ++L   Y+  + +  AR  FD      ++++ W TM+  Y   G     
Sbjct: 343 GIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHG----- 397

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
                                        E +S+F  M   G++P+    + +L+ C+H 
Sbjct: 398 --------------------------CGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHS 431

Query: 177 GAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNA 234
           G I  GL   +     + +E  V     VVD+  + G +  A  +   +        W A
Sbjct: 432 GLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGA 491

Query: 235 MISG 238
           +++ 
Sbjct: 492 LLAA 495



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 11/247 (4%)

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+ S    +         I  G   H+    + L+ N  LA  +V MY+  G + SA+ V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 221 FEGISNKDAGAWNAMISGVAMNG---DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
           F+ I N  +  +N++I     +G        LE + RM   G      T   VL +C   
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337
             V  G           G+E      A ++D+  + G++ +A K  ++ +      D   
Sbjct: 195 SRVCMG-RCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMI----VRDMAS 249

Query: 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397
           W AL++     G+I V   ++ ++    I  ++  +  Y    + G+  +A  +   + +
Sbjct: 250 WNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYT---QNGFAEQALGLFDEMLQ 306

Query: 398 TGMKKKP 404
            G + KP
Sbjct: 307 DGSEMKP 313


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 151/407 (37%), Positives = 244/407 (59%), Gaps = 4/407 (0%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T    + AC +L  LE  G  ++ +VV   F       ++L++ +     +  ARA+FD 
Sbjct: 134 TIVSTLSACSVLKNLE-IGERIYRYVVT-EFEMSVRTGNALVDMFCKCGCLDKARAIFDS 191

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
             D++V  WT+MV GY   G  + ARELFE+ P ++ V W+A+M  Y + + F E L LF
Sbjct: 192 MRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 251

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           R MQ   ++P+   LVS+LT CA  GA+ QG W+H Y +   +  + ++ TA+VDMY+KC
Sbjct: 252 RCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKC 311

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G + +AL VF  +  +D  +W ++I G+A NG + ++L+L+  M   G +  + TFVAVL
Sbjct: 312 GCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVL 371

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           T C+H   V +G  +F +M+  + ++P+ EHY+C++DLL RAG+++EAE+ I++  G   
Sbjct: 372 TACSHGGFVAEGRRIFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERD 431

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391
                V+ +LLSA R YG +++  RV  KL ++ ++D S H L  ++Y  A    +   V
Sbjct: 432 KTLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNV 491

Query: 392 RKLISETGMKKKPGCSVIEVNGVVEEFLAGDN--RHAQAGEIYRVIH 436
           R+ + + G++K PGCS IEV+GV  EF+ G++   H +  EI  ++H
Sbjct: 492 RRKMKDLGIRKFPGCSSIEVDGVSHEFIVGNDPSSHPKMDEINSMLH 538



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 115/232 (49%), Gaps = 36/232 (15%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           G  P+N+T P ++K+   +G L     G  VH + VK G   D +V +SL+  Y+ + KM
Sbjct: 25  GLYPDNFTLPVVLKS---IGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLMGMYAALGKM 81

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
                +FD+ P+RDVV+W  ++  Y   G FE+A  +F++M                   
Sbjct: 82  EITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMS------------------ 123

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
                       +E  +K +E  +VS L+AC+ L  +  G  ++ Y      E +V    
Sbjct: 124 ------------RESNLKADEGTIVSTLSACSVLKNLEIGERIYRYVVT-EFEMSVRTGN 170

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           A+VDM+ KCG +  A ++F+ + +K+   W +M+SG   NG   ++ ELF+R
Sbjct: 171 ALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDEARELFER 222



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 104/218 (47%), Gaps = 7/218 (3%)

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           F +VL+LF +++  G+ P+   L  VL +   L  + +G  VH YA +  LE +  +  +
Sbjct: 11  FTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNS 70

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQP 262
           ++ MY+  G +     VF+ +  +D  +WN +IS    +G  + ++ +F RM + S  + 
Sbjct: 71  LMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKA 130

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E T V+ L+ C+  K +  G  ++  +  V   E  +     +VD+  + G +++A   
Sbjct: 131 DEGTIVSTLSACSVLKNLEIGERIYRYV--VTEFEMSVRTGNALVDMFCKCGCLDKARAI 188

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            +     +   +   W +++S     G+ +    ++ +
Sbjct: 189 FD----SMRDKNVKCWTSMVSGYVSNGRTDEARELFER 222


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  295 bits (755), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 167/455 (36%), Positives = 265/455 (58%), Gaps = 43/455 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG  Q   P  +V  Y  M + G  P+ +TF  ++KAC  L  ++  G  +H  V+K 
Sbjct: 84  MIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVK-LGFGIHGKVLKS 142

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKS---------------------------- 92
           GF  + FV ++L+ F++    + TARALFD S                            
Sbjct: 143 GFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRGKLDVARQLF 202

Query: 93  ---PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY--SRISDFKEV 147
              P +D+V+W  M+  Y K G+ E AR+LF+++P+++ V+W+A++A Y  SR++  KE 
Sbjct: 203 DEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKDVVTWNAMIAGYVLSRLN--KEA 260

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH-SYAKRYHLEKNVILATAVVD 206
           L +F  M+++G +P++  ++S+L+A A LG +  G  +H S       + +V+L+ A++D
Sbjct: 261 LEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALID 320

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY+KCG + +AL VF+G+  KD  +WN++I G+A++G A++S+ LF  M++   +P E T
Sbjct: 321 MYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLFQEMLRLKMKPNEIT 380

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           FVAVL  C+HA  VR+G   F  M  V+ +EP ++HY C+VD+L RAG++ EA  FI+  
Sbjct: 381 FVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTM 440

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WD 385
                  +A +W  LL ACR++G +E+G R   +L +M   +   +VL  NIY   G WD
Sbjct: 441 E---IEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRKDESGDYVLLSNIYASQGEWD 497

Query: 386 MEANKVRKLISETGMKKKPGCSVIEV-NGVVEEFL 419
               KVRKL+ + G+KKK G S+I+  N  +  FL
Sbjct: 498 -GVQKVRKLMDDGGVKKKVGHSLIDSDNSFLMHFL 531



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/304 (18%), Positives = 121/304 (39%), Gaps = 66/304 (21%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G  + A +LF ++ + +   W+ ++   ++       +SL+ QM+  G++P++     VL
Sbjct: 61  GTMDYAHQLFAQISQPDIFMWNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVL 120

Query: 171 TACAHLGAITQGLWVH-------------------------------------------- 186
            AC  L  +  G  +H                                            
Sbjct: 121 KACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALFDASAKREVV 180

Query: 187 -------SYAKRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
                   YA+R  L+           K+++    ++  Y+K G +  A  +F+ +  KD
Sbjct: 181 PWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARKLFDEVPKKD 240

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
              WNAMI+G  ++   K++LE+FD M   G +P + T +++L+       +  G  +  
Sbjct: 241 VVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHR 300

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
           ++  +   +  +     ++D+ A+ G +  A +  +    G+   D + W +++    ++
Sbjct: 301 SIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQ----GMRKKDTSSWNSIIGGLALH 356

Query: 349 GKIE 352
           G  E
Sbjct: 357 GHAE 360


>gi|356544269|ref|XP_003540576.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 522

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 165/436 (37%), Positives = 248/436 (56%), Gaps = 21/436 (4%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P  S   ++ ML+    PN+ TF           P   F   +H+H+++ G   D +V++
Sbjct: 78  PHYSSLFFIQMLNAAVSPNSRTF---SLLLSKSSPSLPFLHQLHSHIIRRGHVSDFYVIT 134

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER--NA 128
           SLL  YS       AR LFD+SP ++V  WT++V GY   G   +AR LF+ +PER  N 
Sbjct: 135 SLLAAYSNHGSTRAARRLFDQSPYKNVACWTSLVTGYCNNGLVNDARNLFDAIPERERND 194

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           VS+SA+++ Y +   F+E + LFR++++  +KPN S L SVL+ACA +GA  +G W+H+Y
Sbjct: 195 VSYSAMVSGYVKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAY 254

Query: 189 AKR------YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             +      Y LE    L TA++D Y+KCG V  A  VF  +  KD  AW+AM+ G+A+N
Sbjct: 255 VDQNKSQCYYELE----LGTALIDFYTKCGCVEPAQRVFGNMKTKDVAAWSAMVLGLAIN 310

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
              +++LELF+ M K G +P   TF+ VLT C H  +  + L LF  MS  YG+   +EH
Sbjct: 311 AKNQEALELFEEMEKVGPRPNAVTFIGVLTACNHKDLFGEALKLFGYMSDKYGIVASIEH 370

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y CVVD+LAR+G +EEA +FI+         D  +WG+LL+ C ++  IE+G++V + L 
Sbjct: 371 YGCVVDVLARSGKIEEALEFIKSME---VEPDGVIWGSLLNGCFLHNNIELGHKVGKYLV 427

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           E+       +VL  N+Y   G      + RK + + G+    G S IE++  V +FL  D
Sbjct: 428 ELEPGHGGRYVLLSNVYATMGKWEAVLETRKFMKDRGVPAVSGSSFIEIHQTVHKFLVHD 487

Query: 423 NRH---AQAGEIYRVI 435
           N H   +   E+YRV+
Sbjct: 488 NNHHCGSYPAEVYRVL 503



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 115/246 (46%), Gaps = 32/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY++    +  +  + ++ D   +PNN     ++ AC  +G  E  G ++HA+V + 
Sbjct: 200 MVSGYVKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEE-GKWIHAYVDQ- 257

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                    +    +Y L  ++GTA                 ++D Y K G  E A+ +F
Sbjct: 258 ---------NKSQCYYEL--ELGTA-----------------LIDFYTKCGCVEPAQRVF 289

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             M  ++  +WSA++   +  +  +E L LF +M++VG +PN    + VLTAC H     
Sbjct: 290 GNMKTKDVAAWSAMVLGLAINAKNQEALELFEEMEKVGPRPNAVTFIGVLTACNHKDLFG 349

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           + L +  Y + +Y +  ++     VVD+ ++ G +  AL   + +    D   W ++++G
Sbjct: 350 EALKLFGYMSDKYGIVASIEHYGCVVDVLARSGKIEEALEFIKSMEVEPDGVIWGSLLNG 409

Query: 239 VAMNGD 244
             ++ +
Sbjct: 410 CFLHNN 415



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 65/319 (20%), Positives = 134/319 (42%), Gaps = 20/319 (6%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H H +  G     F+ S LL FY+    +  A  LF   P  ++  + T++  +     
Sbjct: 23  IHGHAITHGLARFAFISSKLLAFYARS-DLRYAHTLFSHIPFPNLFDYNTIITAFSPHYS 81

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                ++       N+ ++S +++  S    F  +  L   +   G   +   + S+L A
Sbjct: 82  SLFFIQMLNAAVSPNSRTFSLLLSKSSPSLPF--LHQLHSHIIRRGHVSDFYVITSLLAA 139

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-- 230
            ++ G+      +   +      KNV   T++V  Y   G V+ A ++F+ I  ++    
Sbjct: 140 YSNHGSTRAARRLFDQSPY----KNVACWTSLVTGYCNNGLVNDARNLFDAIPERERNDV 195

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF--- 287
           +++AM+SG   NG  ++ ++LF  +     +P  +   +VL+ C       +G  +    
Sbjct: 196 SYSAMVSGYVKNGCFREGIQLFRELKDRNVKPNNSLLASVLSACASVGAFEEGKWIHAYV 255

Query: 288 -ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
            +N S  Y    +LE    ++D   + G VE A++      G +   D   W A++    
Sbjct: 256 DQNKSQCY---YELELGTALIDFYTKCGCVEPAQRV----FGNMKTKDVAAWSAMVLGLA 308

Query: 347 IYGKIEVGNRVWRKLAEMG 365
           I  K +    ++ ++ ++G
Sbjct: 309 INAKNQEALELFEEMEKVG 327


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  295 bits (754), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 161/425 (37%), Positives = 247/425 (58%), Gaps = 8/425 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  M  +G   +N+T P ++K+C  L  +   G  VH   ++ G   D +V +SL++ Y 
Sbjct: 95  YARMHFLGLLGDNFTLPFVLKSCADLSRV-CMGRCVHGQGLRVGLEGDFYVGASLIDMYV 153

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +G AR LFDK   RD+ +W  ++ GY K G+   A +LFE+M  RN VSW+A+++ 
Sbjct: 154 KCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISG 213

Query: 138 YSRISDFKEVLSLFRQMQEVG--MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           Y++    ++ L LF +M + G  MKPN   +VSVL ACA   A+ +G  +H +A    L 
Sbjct: 214 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 273

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFD 253
            N  + TA+  MY+KC  +  A   F+ I+   K+  AWN MI+  A +G   +++ +F+
Sbjct: 274 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 333

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M+++G QP   TF+ +L+ C+H+ ++  GLN F +M  ++ VEP++EHYACVVDLL RA
Sbjct: 334 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRA 393

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G + EA++ I +     G    +VWGALL+ACR +  +E+     R+L  +   +   +V
Sbjct: 394 GRLVEAKELISQMPMQAG---PSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYV 450

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y EAG   E  K+R L+   GMKK PGCS IE+NG    F+  D  H QA EIY+
Sbjct: 451 LLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYK 510

Query: 434 VIHSF 438
            + + 
Sbjct: 511 FLEAL 515



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 129/327 (39%), Gaps = 76/327 (23%)

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L  + +M  +G+  +   L  VL +CA L  +  G  VH    R  LE +  +  +++DM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWN-------------------------------AMI 236
           Y KCG +  A  +F+ +  +D  +WN                               AMI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQ--PTETTFVAVLTTCTHAKMVRDGLNL--FEN--- 289
           SG   NG A+++L LFD M++ G++  P   T V+VL  C  +  +  G  +  F N   
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIG 271

Query: 290 ----------MSAVYGVEPQLEHYACVVDLLARAG--------MVE---------EAEKF 322
                     ++ +Y     L    C  D++A+ G        M+          EA   
Sbjct: 272 LHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSI 331

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG-ITDFSTHVLSY----N 377
            E  +      DA  +  LLS C   G I+ G        +MG I      V  Y    +
Sbjct: 332 FENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG---LNHFNDMGTIHSVEPRVEHYACVVD 388

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKP 404
           +   AG  +EA   ++LIS+  M+  P
Sbjct: 389 LLGRAGRLVEA---KELISQMPMQAGP 412



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 93/243 (38%), Gaps = 38/243 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE--PNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY Q  F + ++  + +ML  G E  PN  T   ++ AC     LE  G  +H    
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALER-GRRIHDFAN 268

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFD--KSPDRDVVTWTTMVDGYGKMGDFENA 116
             G   +  V ++L   Y+  + +  AR  FD      ++++ W TM+  Y   G     
Sbjct: 269 GIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHG----- 323

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
                                        E +S+F  M   G++P+    + +L+ C+H 
Sbjct: 324 --------------------------CGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHS 357

Query: 177 GAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNA 234
           G I  GL   +     + +E  V     VVD+  + G +  A  +   +        W A
Sbjct: 358 GLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGA 417

Query: 235 MIS 237
           +++
Sbjct: 418 LLA 420


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 177/505 (35%), Positives = 257/505 (50%), Gaps = 77/505 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC---VILGPLENFGMFVHAHV 57
           MIR +   + P  +   +  M   G   +N+TFP L+K C   V L  +E+    VHA +
Sbjct: 89  MIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIES----VHAQI 144

Query: 58  VKFGFGEDPFVVSSLLEFYS------------LVHKMGT--------------------- 84
            KFGF  D FV +SL++ YS            L   MG                      
Sbjct: 145 EKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYE 204

Query: 85  -ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
            AR +FD+ P++D ++W TM+DGY K+G  ++A +LF++MPERN VSWS ++  Y +  D
Sbjct: 205 EARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGYCKAGD 264

Query: 144 F-------------------------------KEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                           +E +SLF QM++  +K +   ++S+L A
Sbjct: 265 MEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAA 324

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA  G +  G  +H+  K  + +    ++ A+VDMY+KCG ++ A  VF  I NKD  +W
Sbjct: 325 CAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSW 384

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           NAM+ G+AM+G   K+LELF RM + G  P + T + VL  CTHA ++ DG+  F  M  
Sbjct: 385 NAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYFSTMER 444

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
            Y + P++EHY C+VDLL R G +EEA + I          +A +WG LL ACR++  +E
Sbjct: 445 DYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMP---MAPNAIIWGTLLGACRMHNAVE 501

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEV 411
           +   V   L E+  TD     +  NIY  AG W+  AN  R  +   G KK  G S IEV
Sbjct: 502 LAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVAN-TRLRMRSIGTKKPSGASSIEV 560

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVIH 436
           N  V EF   D  H ++  IY+VI+
Sbjct: 561 NNEVHEFTVFDRSHPKSDNIYQVIN 585



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 124/313 (39%), Gaps = 22/313 (7%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K     D FVV  L+  +SL  +M  A   F++    +V  + TM+  +     
Sbjct: 39  LHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQ 98

Query: 113 FENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN---ESG 165
              A   F  M       +  ++  ++   +       + S+  Q+++ G   +    + 
Sbjct: 99  PSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNS 158

Query: 166 LVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
           L+   + C   G +  + L+V   A+R     +V+   +++   +K G    A  VF+ +
Sbjct: 159 LIDSYSKCGSCGISAAKKLFVSMGARR-----DVVSWNSMISGLAKGGLYEEARKVFDEM 213

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             KD  +WN M+ G    G    + +LFD M +       T    VL  C    M    +
Sbjct: 214 PEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTM---VLGYCKAGDMEMARM 270

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            LF+ M         L  +  +V   A  G+  EA    ++        D     ++L+A
Sbjct: 271 -LFDKMPV-----KNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAA 324

Query: 345 CRIYGKIEVGNRV 357
           C   G + +G ++
Sbjct: 325 CAESGLLGLGEKI 337


>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
 gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]
          Length = 514

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 250/451 (55%), Gaps = 30/451 (6%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACV------ILGPLENFGMF-----VHAHVVKFG 61
           L +F  L  +   F PNNYTF  L+KA         LGP   FG       +HA  V   
Sbjct: 58  LRLFPRLRRIFPDFRPNNYTFSFLLKAAADSSAPPSLGPDYPFGAHAIVPSLHALAVVLA 117

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDK---SPDRDVVTWTTMVDGYGKMGDFENARE 118
           +    +V + L+  Y+    + +AR LF+    S   DV +WT+++    K G  E AR 
Sbjct: 118 WDAHAYVANGLIHAYATHGVVPSARRLFEDALASRAADVCSWTSLLTACAKAGQVEEARA 177

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+ MP RN V+WSA+++AY     F + + LF  M   G++PN + +V VL AC  LGA
Sbjct: 178 LFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFEDMLRSGVRPNRAAVVGVLAACGALGA 237

Query: 179 ITQGLWVH------SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI---SNKDA 229
           + QG WVH      ++        + ++ATA+VDMY+KCG + +A  VF      S +D 
Sbjct: 238 LDQGRWVHALLVSGTHGGDGATAMDGVVATALVDMYAKCGSLDTARQVFAAAAPRSQRDV 297

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            A+ AMISG++ +G   ++++LF +M   G +P E TF+ VLT C  A +V     +F +
Sbjct: 298 FAYTAMISGLSDHGRCGEAIDLFGQMQAEGVRPNEVTFICVLTACGRAGLVGRAKEVFRS 357

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M+AV+G+EP +EHY C+VD+L RAG++ EA + +          DA V GALL+AC  +G
Sbjct: 358 MAAVHGMEPGVEHYGCLVDVLGRAGLLAEAMETVRSMT---MRPDAYVLGALLNACAAHG 414

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM--EANKVRKLISETGMKKKPGCS 407
            +E G +V R LAE+G+     HV   N+Y  AGW    E  KVR+ + +  + K PGCS
Sbjct: 415 DVEAGEQVVRWLAELGLDHSGVHVQLSNMY--AGWSKWEEVLKVRRTMDQRKVAKVPGCS 472

Query: 408 VIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           ++EV+GV  EF+AGD  H +  EI   I   
Sbjct: 473 MLEVDGVASEFVAGDRSHPRMQEIMSAIRDL 503



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 31/249 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y+ A     +V  + DML  G  PN      ++ AC  LG L+  G +VHA +V  
Sbjct: 193 MLSAYVAAGSFDDAVRLFEDMLRSGVRPNRAAVVGVLAACGALGALDQ-GRWVHALLVSG 251

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G D                   A A+       D V  T +VD Y K G  + AR++F
Sbjct: 252 THGGD------------------GATAM-------DGVVATALVDMYAKCGSLDTARQVF 286

Query: 121 ---EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
                  +R+  +++A+++  S      E + LF QMQ  G++PNE   + VLTAC   G
Sbjct: 287 AAAAPRSQRDVFAYTAMISGLSDHGRCGEAIDLFGQMQAEGVRPNEVTFICVLTACGRAG 346

Query: 178 AITQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAM 235
            + +   V  S A  + +E  V     +VD+  + G +  A+     ++ + DA    A+
Sbjct: 347 LVGRAKEVFRSMAAVHGMEPGVEHYGCLVDVLGRAGLLAEAMETVRSMTMRPDAYVLGAL 406

Query: 236 ISGVAMNGD 244
           ++  A +GD
Sbjct: 407 LNACAAHGD 415


>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Glycine max]
          Length = 483

 Score =  294 bits (753), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 160/400 (40%), Positives = 231/400 (57%), Gaps = 8/400 (2%)

Query: 11  PKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV 69
           P  + F +  ++      P+ YT  PL K+   L      G  VHAHVV+ GF     V 
Sbjct: 86  PFHASFSFFSLMKTRAISPDEYTLAPLFKSASNL-RYYVLGGCVHAHVVRLGFTRHASVR 144

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
            + LE Y+   +MG A  +FD+  D DVV W  M+ G+ KMGD E   ++F +M ER  V
Sbjct: 145 VAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQMKERTVV 204

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+ +M+  ++ +  ++ L LF +M E G +P+++ LV+VL  CA LGA+  G W+HSYA
Sbjct: 205 SWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLPVCARLGAVDIGEWIHSYA 264

Query: 190 K-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             +  L+  + +  ++VD Y KCG++ +A S+F  +++K+  +WNAMISG+A NG+ +  
Sbjct: 265 NSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVVSWNAMISGLAYNGEGEVG 324

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           + LF+ MV  G +P ++TFV VL  C H  +V  G +LF +MS  + V P+LEHY CVVD
Sbjct: 325 VNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSPKLEHYGCVVD 384

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           LL R G V EA   I           A +WGALLSACR YG  E+     ++L  +   +
Sbjct: 385 LLGRCGHVREARDLITSMP---LKPTAALWGALLSACRTYGDREIAENAAKELVRLEPWN 441

Query: 369 FSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCS 407
              +VL  N+Y E G WD E  KVR L+   G+KK PG S
Sbjct: 442 SGNYVLLSNVYAEEGRWD-EVEKVRVLMRGGGVKKVPGQS 480



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 114/281 (40%), Gaps = 35/281 (12%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  LF      N + ++AI+ A+S    F    S F  M+   + P+E  L  +  + ++
Sbjct: 59  ATRLFAHTHNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASN 118

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L     G  VH++  R    ++  +  A +++Y+ C  +  A  VF+ + + D   WN M
Sbjct: 119 LRYYVLGGCVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLM 178

Query: 236 ISG-------------------------------VAMNGDAKKSLELFDRMVKSGTQPTE 264
           I G                               +A N   +K+LELF+ M++ G +P +
Sbjct: 179 IRGFCKMGDLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDD 238

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            + V VL  C     V  G  +    ++   ++  +     +VD   + G ++ A     
Sbjct: 239 ASLVTVLPVCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFN 298

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           +    +   +   W A++S     G+ EVG  ++ ++   G
Sbjct: 299 D----MASKNVVSWNAMISGLAYNGEGEVGVNLFEEMVHGG 335



 Score = 38.1 bits (87), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 32/144 (22%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G       ++ V  + +M+  GFEPN+ TF  ++  C  +G ++       +  VKF
Sbjct: 311 MISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKF 370

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                   VS  LE Y  V                        VD  G+ G    AR+L 
Sbjct: 371 K-------VSPKLEHYGCV------------------------VDLLGRCGHVREARDLI 399

Query: 121 EKMPER-NAVSWSAIMAAYSRISD 143
             MP +  A  W A+++A     D
Sbjct: 400 TSMPLKPTAALWGALLSACRTYGD 423


>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
          Length = 768

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 254/439 (57%), Gaps = 5/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y+  + P  +   +  +   G  P+++     + AC     L N G  VH  V +F
Sbjct: 325 LISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSN-GRIVHGMVFRF 383

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G DP V ++L++ YS    +  A ++F     +DV +WT++++G+ K  D E AR +F
Sbjct: 384 ELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIF 443

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAI 179
           ++MP RN+VSW+A++  Y +       L LF++M+  G   P    +V+VL+ CA +GA 
Sbjct: 444 DEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAF 503

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VH Y  + +L+ +V +  A++DMY+K G +  AL +F+ +  +D  +W  MISG+
Sbjct: 504 DLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGL 563

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G    +LE F  M KSG  P E T ++VL+ C+HA +V +G +LF+ M   +G++P+
Sbjct: 564 ALHGKGTHALEAFSDMSKSGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPK 623

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY C+VDLL RAG++ EA++ IE         D+ +W +LLSAC ++G + +     +
Sbjct: 624 IQHYGCMVDLLGRAGLLREAKELIEHMP---IKPDSVIWRSLLSACLVHGNLALAEMAGK 680

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            + E+   D   ++L +NIY  A    +A K RK + +  +KKKPGCS +EVNGVV EFL
Sbjct: 681 MIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFL 740

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           A D  H    ++Y V+ + 
Sbjct: 741 AEDAVHCIRADVYTVLEAI 759



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 4/190 (2%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +++ Y ++G   +A+++F  +   + VSW+ +++ Y   S   +  S+F  +   G++P+
Sbjct: 294 LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 353

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
              +V  ++AC H   ++ G  VH    R+ L  + I+  A++DMYS+ G +  A SVF+
Sbjct: 354 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 413

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +  KD  +W ++++G     D + +  +FD M          ++ A++T     ++   
Sbjct: 414 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM----PMRNSVSWTAMITGYVQGEVPIP 469

Query: 283 GLNLFENMSA 292
           GL LF+ M A
Sbjct: 470 GLELFQEMRA 479



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 87/204 (42%), Gaps = 18/204 (8%)

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           H  A+T GL     +KR HL      A  +++ Y++ G    A  VF  I N D  +W  
Sbjct: 274 HGKAVTLGLLC---SKRQHL------ACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTC 324

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +IS         K+  +F  +  SG +P     V  ++ C H K + +G  +   M   +
Sbjct: 325 LISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNG-RIVHGMVFRF 383

Query: 295 --GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             G +P + +   ++D+ +R+G +E A    +     +   D + W +LL+       IE
Sbjct: 384 ELGSDPIVGN--ALIDMYSRSGAIEVACSVFKT----MEIKDVSSWTSLLNGFIKCNDIE 437

Query: 353 VGNRVWRKLAEMGITDFSTHVLSY 376
              R++ ++       ++  +  Y
Sbjct: 438 AARRIFDEMPMRNSVSWTAMITGY 461


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 149/344 (43%), Positives = 218/344 (63%), Gaps = 5/344 (1%)

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           P++ +V+ T M+  Y K G  + AR LF+ + ER+A+ W+ ++  Y++     E L LFR
Sbjct: 2   PEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFR 61

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           QM    ++PNE  +++VL+AC   GA+  G WVHSY +   +  NV + T+++DMYSKCG
Sbjct: 62  QMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCG 121

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            +  A  VFE ISNKD  AWN+M+ G AM+G ++ +L LF  M   G QPT+ TF+ VL 
Sbjct: 122 SLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLN 181

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
            C+HA +V +G   F +M   YG+EP++EHY C+V+LL RAG +EEA + ++        
Sbjct: 182 ACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNME---ID 238

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKV 391
            D  +WG LL ACR++G I +G ++   L    + +  T+VL  NIY  AG W+  A +V
Sbjct: 239 QDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVA-RV 297

Query: 392 RKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           R L+ E+G +K+PGCS IEVN  V EFLAGD RH ++ EIY ++
Sbjct: 298 RTLMKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEML 341



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q   P   +  +  ML+    PN  T   ++ AC   G LE  G +VH+++   
Sbjct: 43  MIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGALET-GRWVHSYIENN 101

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G +  V +SL++ YS    +  AR +F++  ++DVV W +MV GY   G  ++A    
Sbjct: 102 GIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDA---- 157

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L LF++M  +G +P +   + VL AC+H G ++
Sbjct: 158 ---------------------------LRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  + +S    Y +E  V     +V++  + G++  A  + + +  ++D   W  ++  
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250

Query: 239 VAMNGD 244
             ++G+
Sbjct: 251 CRLHGN 256


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 240/420 (57%), Gaps = 7/420 (1%)

Query: 22  LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81
           LDMGF  N ++F  ++  CV L  L+     VH  V+  GF  +  + SS+++ YS   +
Sbjct: 189 LDMGF--NAFSFAGVLILCVKLKELQ-LAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGE 245

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           M  AR LFD+   +D+  WTT+V GY K GD  +A ELF +MPE+N VSWSA+++ Y+R 
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARN 305

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
           S   E L  F +M + G+ P +    S L ACA + A+  G  VH Y  R +   N I+ 
Sbjct: 306 SLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVV 365

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           ++++DMYSKCG + ++  VF  + NK D   WN MIS +A NG  +K++++F+ MV+SG 
Sbjct: 366 SSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P   TF+ +L+ C+H+ +V++GL  F+ M+  +GV P  EHYAC++DLL RAG   E  
Sbjct: 426 KPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVE-- 483

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
             + E        D  VW ALL  CRI+  IE+G +V  ++ E+     + +V   ++Y 
Sbjct: 484 -LVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYA 542

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
             G      KVR+L+ E  ++K+ G S I+V      F+A D  H    EIY ++    +
Sbjct: 543 FLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLAR 602



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 175/393 (44%), Gaps = 40/393 (10%)

Query: 7   QANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           Q   P+     YLD L   G       F  L++ C      +  G  VH H+   GF   
Sbjct: 40  QGRLPE--ALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKG-GKCVHLHLKHTGFKRP 96

Query: 66  PFVVSS-LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
             +V++ L+  Y    +   AR +FDK   R++ +W  M+ GY K+GD  NAR+LF++M 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           E++ VSW+ I+ AY++   F E + L+R  + + M  N      VL  C  L  +     
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA------------- 231
           VH          N++L++++VD YSKCG +  A ++F+ +  KD  A             
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 232 ------------------WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
                             W+A+ISG A N    ++L+ F +M+K G  P + TF + L  
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C     ++ G  +   +   Y         + ++D+ ++ GM+ EA   +   MG     
Sbjct: 337 CASIAALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKCGML-EASCCVFHLMG--NKQ 392

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           D  VW  ++SA    G  E   +++  + E G+
Sbjct: 393 DVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 117/266 (43%), Gaps = 35/266 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY + +    ++  +  M+  G  P  YTF   + AC  +  L++ G  VH ++++ 
Sbjct: 298 LISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKH-GKQVHGYLIRT 356

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENAREL 119
            F  +  VVSSL++ YS    +  +  +F    ++ DVV W TM+    + G  E A   
Sbjct: 357 YFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKA--- 413

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                       + +F  M E G+KP+    + +L+AC+H G +
Sbjct: 414 ----------------------------MQMFNDMVESGLKPDRITFIVILSACSHSGLV 445

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMIS 237
            +GL +  +    + +  +      ++D+  + G     ++  E +S K D   W+A++ 
Sbjct: 446 QEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLG 505

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPT 263
              ++ + +   ++ +R+++   Q +
Sbjct: 506 VCRIHNNIELGRKVAERVIELKPQSS 531


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 245/445 (55%), Gaps = 35/445 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY ++N P L+   + ++L  G  P++YTF  L+KAC     L   GM +H   VK 
Sbjct: 101 MARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALRE-GMGLHCFAVKL 159

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + ++                                 T+++ Y +  D   AR +F
Sbjct: 160 GLNHNIYICP-------------------------------TLINMYAECNDMNAARGVF 188

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M +   VS++AI+  Y+R S   E LSLFR++Q   ++P +  ++SV+ +CA LGA+ 
Sbjct: 189 DEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALD 248

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H Y K+   +K V + TA++DM++KCG +  A+S+FEG+  +D  AW+AMI   A
Sbjct: 249 LGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFA 308

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +GD  K++ +F+ M + G +P E TF+ +L  C+HA +V  G   F +MS  YG+ P +
Sbjct: 309 THGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGI 368

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG ++EA  F+++           +W  LLSAC  +G +E+  RV  +
Sbjct: 369 KHYGCMVDLLGRAGHLDEAYNFVDKLE---IKATPILWRTLLSACSTHGNVEMAKRVIER 425

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+       +V+  N+Y   G   + N +RKL+ + G+ K PGCS +EVN VV EF +
Sbjct: 426 IFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFS 485

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
           GD  H  + E+ R +   +K   LV
Sbjct: 486 GDGVHCVSVELRRALDELMKEIKLV 510


>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
 gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 254/439 (57%), Gaps = 5/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y+  + P  +   +  +   G  P+++     + AC     L N G  VH  V +F
Sbjct: 74  LISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSN-GRIVHGMVFRF 132

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G DP V ++L++ YS    +  A ++F     +DV +WT++++G+ K  D E AR +F
Sbjct: 133 ELGSDPIVGNALIDMYSRSGAIEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAI 179
           ++MP RN+VSW+A++  Y +       L LF++M+  G   P    +V+VL+ CA +GA 
Sbjct: 193 DEMPMRNSVSWTAMITGYVQGEVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAF 252

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VH Y  + +L+ +V +  A++DMY+K G +  AL +F+ +  +D  +W  MISG+
Sbjct: 253 DLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQEMPKRDVFSWTTMISGL 312

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G    +LE F  M KSG  P E T ++VL+ C+HA +V +G +LF+ M   +G++P+
Sbjct: 313 ALHGKGTHALEAFSDMSKSGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPK 372

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY C+VDLL RAG++ EA++ IE         D+ +W +LLSAC ++G + +     +
Sbjct: 373 IQHYGCMVDLLGRAGLLREAKELIEHMP---IKPDSVIWRSLLSACLVHGNLALAEMAGK 429

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            + E+   D   ++L +NIY  A    +A K RK + +  +KKKPGCS +EVNGVV EFL
Sbjct: 430 MIIELEPDDDGVYILLWNIYCSASRWEDALKARKAMRDRRVKKKPGCSWVEVNGVVHEFL 489

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           A D  H    ++Y V+ + 
Sbjct: 490 AEDAVHCIRADVYTVLEAI 508



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 99/190 (52%), Gaps = 4/190 (2%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +++ Y ++G   +A+++F  +   + VSW+ +++ Y   S   +  S+F  +   G++P+
Sbjct: 43  LLNTYTQLGSPVDAQKVFNHIQNPDIVSWTCLISLYLHTSQPCKAFSIFSHLFHSGLRPD 102

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
              +V  ++AC H   ++ G  VH    R+ L  + I+  A++DMYS+ G +  A SVF+
Sbjct: 103 SFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGAIEVACSVFK 162

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +  KD  +W ++++G     D + +  +FD M          ++ A++T     ++   
Sbjct: 163 TMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEM----PMRNSVSWTAMITGYVQGEVPIP 218

Query: 283 GLNLFENMSA 292
           GL LF+ M A
Sbjct: 219 GLELFQEMRA 228



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 24/207 (11%)

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           H  A+T GL     +KR HL      A  +++ Y++ G    A  VF  I N D  +W  
Sbjct: 23  HGKAVTLGLLC---SKRQHL------ACKLLNTYTQLGSPVDAQKVFNHIQNPDIVSWTC 73

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +IS         K+  +F  +  SG +P     V  ++ C H K + +G  +   M   +
Sbjct: 74  LISLYLHTSQPCKAFSIFSHLFHSGLRPDSFCVVGAVSACGHRKDLSNG-RIVHGMVFRF 132

Query: 295 --GVEPQLEHYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLSACRIYG 349
             G +P + +   ++D+ +R+G +E A    K +E K       D + W +LL+      
Sbjct: 133 ELGSDPIVGN--ALIDMYSRSGAIEVACSVFKTMEIK-------DVSSWTSLLNGFIKCN 183

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSY 376
            IE   R++ ++       ++  +  Y
Sbjct: 184 DIEAARRIFDEMPMRNSVSWTAMITGY 210


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  293 bits (751), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 158/448 (35%), Positives = 255/448 (56%), Gaps = 39/448 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY ++  P  +V  Y  M++ G   +NYT+P ++ AC  LG ++  G   H  V+K 
Sbjct: 82  MIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVK-LGRRFHCEVLKN 140

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D FV+++L++FY      G A  +FD+S  RDVVTW  M++ +   G  E A +L 
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M + +                               ++P+E  +VS++ ACA LG + 
Sbjct: 201 DEMTKLD------------------------------NLRPDEVTMVSLVPACAQLGNLE 230

Query: 181 QGLWVHSYAK---RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +G ++HSY+K   ++ +  +++L TA+VDMY+KCG +  AL VF  +  ++   WNA+I 
Sbjct: 231 RGKFLHSYSKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIG 290

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+AM+G  + ++ LFD+M      P + TF+A+L  C+HA +V +GL +F+ M   + +E
Sbjct: 291 GLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIE 350

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY CVVDLL RA  V++A  FIE         ++ +W  LL ACR  G  ++  ++
Sbjct: 351 PRMEHYGCVVDLLCRARKVDDALAFIENMP---IKANSVLWATLLGACRSGGHFDLAEKI 407

Query: 358 WRKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            R++ E+       +V+  N+Y   + WD  A K+RK +   G++K PGCS IE+NG++ 
Sbjct: 408 GRRVIELEPDSCGRYVMLSNLYAGVSQWD-HALKLRKQMKNKGIEKTPGCSWIELNGMIH 466

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +F+AGD  H Q  +IY +I    +  NL
Sbjct: 467 QFVAGDRSHLQTEQIYAMIEEMTRRVNL 494



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 108/245 (44%), Gaps = 7/245 (2%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD   AR+LF +M   +    + ++  Y+R  +  E +SL+  M E G+  +      VL
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA LGA+  G   H    +     ++ +  A++  Y  CG    A  VF+  + +D  
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDG--LNLF 287
            WN MI+     G ++K+ +L D M K    +P E T V+++  C     +  G  L+ +
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY 238

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
                 + +   L     +VD+ A+ G ++ A +        +   +   W AL+    +
Sbjct: 239 SKELDKFEINCDLVLETALVDMYAKCGSIDLALQVFRR----MRVRNVFTWNALIGGLAM 294

Query: 348 YGKIE 352
           +G  E
Sbjct: 295 HGHGE 299



 Score = 44.7 bits (104), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 159 MKPNE--SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY--SKCGHV 214
           +KP+   + L+SV     H  +I++    H+   R HL  N + ++ ++     S  G +
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           + A  +F  + N D    N MI G A + +  +++ L+  MV+ G      T+  VL  C
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 275 THAKMVRDG 283
                V+ G
Sbjct: 122 ARLGAVKLG 130


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  293 bits (751), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 169/438 (38%), Positives = 243/438 (55%), Gaps = 36/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G ++      ++ C+++M   G E +  T   ++ A  +L  +  FG +VH   V+ 
Sbjct: 175 LINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVW-FGRWVHGFYVES 233

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                        R ++D      V   + +VD Y K G  ++A ++F
Sbjct: 234 G------------------------RVIWD------VYVGSALVDMYSKCGYCDDAVKVF 263

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MP RN VSW A++A Y + + +KE L +F++M   G++PN+S + S LTACA LG++ 
Sbjct: 264 NEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLD 323

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H Y  R  L  N  L TA+VDMYSKCG V  AL VFE +  KD   W AMI+G+A
Sbjct: 324 QGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLA 383

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M GDA  SL LF +M++S  QP   TF+ VL+ C H  +V +GL LF  M   Y +EP +
Sbjct: 384 MRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNV 443

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG +EEA KFIE        G   VWGAL S C I+   E+G  +   
Sbjct: 444 DHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG---VWGALFSGCMIHKAFELGEHIGNH 500

Query: 361 LAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L ++       ++L  N+Y     W+  AN VR+L+   G+ K PGCS IEVNGV+ EF+
Sbjct: 501 LIKLQPHHSGRYILLANLYSRCQKWEAAAN-VRRLMKGKGVDKSPGCSWIEVNGVIHEFI 559

Query: 420 AGDNRHAQAGEIYRVIHS 437
           A D  H ++  +Y ++ S
Sbjct: 560 AFDKSHTESINVYMMLES 577



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 169/352 (48%), Gaps = 43/352 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF-VHAHVVK 59
           +IRG+  ++ P++ +  Y  + + G  P+ +TFP L+KA      L N   F  +AH+VK
Sbjct: 75  IIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA---FSKLRNENPFQFYAHIVK 131

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FG   D FV +SL                               V  +   G  + +R L
Sbjct: 132 FGLDFDAFVQNSL-------------------------------VSAFAHCGYVDCSRRL 160

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +  +++ VSW+A++    R     E L  F +M+  G++ +E  +VSVL A A L  +
Sbjct: 161 FIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDV 220

Query: 180 TQGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             G WVH  Y +   +  +V + +A+VDMYSKCG+   A+ VF  +  ++  +W A+I+G
Sbjct: 221 WFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAG 280

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS-AVYGVE 297
                  K++L++F  M+  G +P ++T  + LT C     +  G  L E +  +  G+ 
Sbjct: 281 YVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLN 340

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            +L     +VD+ ++ G V+EA    E+    L   D   W A+++   + G
Sbjct: 341 SKLG--TALVDMYSKCGCVDEALLVFEK----LPAKDVYPWTAMINGLAMRG 386



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 123/265 (46%), Gaps = 21/265 (7%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+++       W+ I+  +S  S  + VL  + +++  G+ P+      +L A + L  
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
                  +++  ++ L+ +  +  ++V  ++ CG+V  +  +F   + KD  +W A+I+G
Sbjct: 120 -ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD--------GLNLFENM 290
              NG A ++LE F  M  SG +  E T V+VL     A M+RD        G  + E+ 
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCA---AAMLRDVWFGRWVHGFYV-ESG 234

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
             ++ V       + +VD+ ++ G  ++A K   E    +   +   WGAL++      +
Sbjct: 235 RVIWDVYVG----SALVDMYSKCGYCDDAVKVFNE----MPTRNLVSWGALIAGYVQCNR 286

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLS 375
            +   +V++++   GI    + V S
Sbjct: 287 YKEALKVFQEMIIEGIEPNQSTVTS 311


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 262/456 (57%), Gaps = 16/456 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+ Q+  P   V  Y  M++   EPN +T+  LI  C     L   G  VH  VV  
Sbjct: 103 MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLRE-GEQVHGRVVAN 161

Query: 61  GFGEDPFVVSSLLEFYSLV---HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           G+  + FV +SL+  Y++      +  AR +FD+  DR++V+W +++ GY + GD + AR
Sbjct: 162 GYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGAR 221

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            +F++MPERN VSW+ ++A  ++I   K+ L LF +M+  G+K ++  LV+ L+ACA LG
Sbjct: 222 RIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 281

Query: 178 AITQGLWVHSYA-KRYHLEKNVILAT---AVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            +  G W+HSY  +R H     +L +   +++ MY+ CG +  A  VF G+  +   +W 
Sbjct: 282 DLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT 341

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGT---QPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +MI+G A  G A+++L +F  M + GT   +P   TF+ VL  C+HA  V  G + FE M
Sbjct: 342 SMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECM 401

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           +  +G+ P++EHY C+VDLL+RAG ++EA +  E     +   DA VWGALL  CRI+  
Sbjct: 402 NKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESM--PMKPNDA-VWGALLGGCRIHKN 458

Query: 351 IEVGNRVWRKLA-EMGITDFSTH-VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
            E+ + V +KL  E+     + + VL  N+Y  A    +   VR+ + E G++K  G S 
Sbjct: 459 AELASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSW 518

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +++NGVV +F+AGD  H  A  +Y ++    + + L
Sbjct: 519 VQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKL 554



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 11/229 (4%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H  ++  GF +  F++  LL FY     +  A  +F++  +     W  M+ G+ +   
Sbjct: 53  IHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSET 112

Query: 113 FENARELFEKM----PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
                EL+ +M     E N  ++S ++   +R    +E   +  ++   G   N    V 
Sbjct: 113 PHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTN----VF 168

Query: 169 VLTACAHLGAITQGLWVHSYAKRYH---LEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           V T+  +L AI  G      A+R     +++N++   +++  Y +CG V  A  +F+ + 
Sbjct: 169 VRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMP 228

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
            ++  +W  MI+G A  G  K++L LF  M ++G +  +   VA L+ C
Sbjct: 229 ERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSAC 277



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 91/184 (49%), Gaps = 13/184 (7%)

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           +KN +L   ++  Y   G++ +A  VFE I N     WN MI G + +    K +EL++R
Sbjct: 64  QKNFLL-VKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNR 122

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           MV++  +P E T+  ++  C  + ++R+G  +   + A  G    +     +V+L A AG
Sbjct: 123 MVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVA-NGYCTNVFVRTSLVNLYAIAG 181

Query: 315 ---MVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
               V +A +  +E +      D N+  W +LL+     G ++   R++ ++ E  +  +
Sbjct: 182 GYDGVRKARRVFDEIV------DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSW 235

Query: 370 STHV 373
           +T +
Sbjct: 236 TTMI 239


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 256/446 (57%), Gaps = 10/446 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD----MGFEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           MIR Y +    +  +  +L ML     M   P+ YTF  +I +C     L  +G  VH  
Sbjct: 145 MIRTYSKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLI-YGEIVHGM 203

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           VVK GF  + +V +S++   S+  +M  AR +F++  +RDV +WT+++ GY K G+ + A
Sbjct: 204 VVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRA 263

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAH 175
            ELF  MP RN VSW+ +++ +     + E L+ F  M  +  + PNE+ LV VL+ACAH
Sbjct: 264 CELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAH 323

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+ QG W+H Y  +  + ++  ++TA++DMY+KCG +  A  VF GI  +D  ++ +M
Sbjct: 324 LGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSM 383

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ISG++ +G  K +L +F +M+     P E T + VL  C+H+ +V +G ++  NM +++G
Sbjct: 384 ISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWG 443

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P++EHY C +DLL RAG +E A + ++         D  +W ALLSA RI+  + +G 
Sbjct: 444 IAPKIEHYGCYIDLLGRAGYLERALEVVKTMP---MEPDIVIWRALLSASRIHHNVNLGE 500

Query: 356 RVWRKLAEMGITDFS-THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           ++   + ++  +D +   VL  N+Y   G      ++RKL+ +   +  PGCS IEVNG+
Sbjct: 501 QIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGL 560

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLK 440
           V EF   D  H Q  EI   ++  LK
Sbjct: 561 VHEFRVADQLHPQIVEIRNKLNEILK 586



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 158/373 (42%), Gaps = 44/373 (11%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV 69
           FP +S+      +D+   PN  TF  L+     L PL+     +HA VV      +  + 
Sbjct: 57  FPSISIPTNPIPIDL---PNPQTFSLLLNQRPKLSPLQQ----IHAQVVTQALSSNASLT 109

Query: 70  SSLLEFYSLVHKMGTARALFD--KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           +SL+  Y        AR LFD   SP   +  W  M+  Y K+ + +    LF +M    
Sbjct: 110 ASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRM---- 165

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
                               L+L   MQ V   P+E     V+T+C+H  ++  G  VH 
Sbjct: 166 --------------------LTLDGPMQVV---PDEYTFTFVITSCSHQISLIYGEIVHG 202

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
              +   E N+ +  +V++M S    +  A  VF  +S +D  +W +++ G A +G+  +
Sbjct: 203 MVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDR 262

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           + ELF+ M        + ++  +++         + L  F NM     V P      CV+
Sbjct: 263 ACELFNMMPVRN----DVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAVLVCVL 318

Query: 308 DLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
              A  G +++   +I   +  +G    +N+  AL+      G+I+  +RV+  + +  +
Sbjct: 319 SACAHLGALDQG-NWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDV 377

Query: 367 TDFSTHV--LSYN 377
             F++ +  LSY+
Sbjct: 378 LSFTSMISGLSYH 390


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/452 (36%), Positives = 246/452 (54%), Gaps = 50/452 (11%)

Query: 1   MIRGYMQA-------NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGP-LENFGMF 52
           +IR ++QA           +S+F  + M   G +P+ +TFP L+++     P L + G  
Sbjct: 30  LIRAHVQARAQPTGPTHSPISIF--VRMRFHGVQPDFHTFPFLLQS--FASPSLLHLGRS 85

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA +++FG   DPFV +SL+  YS                                 G 
Sbjct: 86  VHAQILRFGLAIDPFVQTSLISMYS-------------------------------SSGL 114

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM---KPNESGLVSV 169
            + AR LF  MPERN +SWS ++  Y R   +KE L+LFR+MQ +G+   +PNE  +  V
Sbjct: 115 VDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGV 174

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKD 228
           L AC  LGA+  G W H+Y  +  +  +V+L TA++DMY+KCG V  A  VF  +  NKD
Sbjct: 175 LAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 234

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             AW+AMISG+AM+G A++ + LF +M+  G +P   TF+AV   C H  +V +G +   
Sbjct: 235 VMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLR 294

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M+  Y + P ++HY C+VDL  RAG ++EA   ++         D  VWGALLS  R++
Sbjct: 295 RMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMP---MEPDVLVWGALLSGSRMH 351

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
           G IE      +KL E+  T+   +VL  N+Y + G   +   VR L+   G+KK PGCS+
Sbjct: 352 GDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSL 411

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           IEV GV+ EF  GD+ H +  +I+ ++   L+
Sbjct: 412 IEVGGVLHEFFVGDDSHPETRQIHMMLEEILE 443


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/468 (32%), Positives = 267/468 (57%), Gaps = 37/468 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI+G++   +P  ++ CY+ ML+     P +YTF  L+KAC  +  +E  G  VH H+ K
Sbjct: 205 MIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVE-LGQMVHCHIWK 263

Query: 60  FGFGEDPFVVSSLLEFYS-------------------------------LVHKMGTARAL 88
            GF    FV ++L++FYS                                V  M +AR L
Sbjct: 264 KGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKL 323

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           F++ P+R+  TW TM+DGY ++G+ E+A  LF +MP ++ +SW+ ++  YS+   +++ L
Sbjct: 324 FEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDAL 383

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           +++ +M+  G+ P+E  + +V +ACAH+GA+  G  +H Y     L  +V + +A+VDMY
Sbjct: 384 AIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMY 443

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG +  +L +F  +++K+   WNA+I G+A++G A+K+L +F  M +    P   TF+
Sbjct: 444 AKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFI 503

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           ++L+ CTHA +V +G + F +M+  Y + P + HY C+VD+L+++G + EA + I+    
Sbjct: 504 SILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSME- 562

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
                ++ +WGALL+ C+++G  E+      +L  +   +   + L  ++Y E    ME 
Sbjct: 563 --FEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEV 620

Query: 389 NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
             +R ++ E G++KK PG S IE+ G + +F A  + H  + +IY V+
Sbjct: 621 AHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFVL 668



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 31/328 (9%)

Query: 120 FEKMPERNAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           F +M   N   ++A++  +      F+ +      ++E  + P      S++ AC  + A
Sbjct: 191 FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 250

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  VH +  +   E ++ + TA+VD YSK   +  A  VF+ +  +DA AW AM+S 
Sbjct: 251 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMVSA 310

Query: 239 VAMNGDAKKSLELFDRMVKSGT-------------------------QPTE--TTFVAVL 271
           +A  GD   + +LF+ M +  T                          PT+   ++  ++
Sbjct: 311 LARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMI 370

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           T  +  K  +D L ++  M  + G+ P     + V    A  G +E  ++     M    
Sbjct: 371 TCYSQNKQYQDALAIYSEMR-LNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGL 429

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV--LSYNIYKEAGWDMEAN 389
             D  +  AL+      G +++   ++ KL +  +  ++  +  L+ + Y E    M A 
Sbjct: 430 NLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAI 489

Query: 390 KVRKLISETGMKKKPGCSVIEVNGVVEE 417
             R+ I   G+      S     G+V+E
Sbjct: 490 MEREKIMPNGVTFISILSACTHAGLVDE 517



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 6/164 (3%)

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLT 272
           VH  +  F  + N +   +NAMI G    G   ++L+ +  M+ +S   PT  TF +++ 
Sbjct: 184 VHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVK 243

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
            CT    V  G  +  ++    G E  L     +VD  ++  ++ EA K  +E    +  
Sbjct: 244 ACTFMCAVELGQMVHCHIWK-KGFESHLFVQTALVDFYSKLEILSEARKVFDE----MCE 298

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            DA  W A++SA    G ++   +++ ++ E     ++T +  Y
Sbjct: 299 RDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGY 342


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  293 bits (750), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 151/419 (36%), Positives = 247/419 (58%), Gaps = 8/419 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLEN--FGMFVHAHVVKFGFG-EDPFVVSSLLE 74
           ++ M +   EPN+ TF  L+ AC       +  FG  +HAHV K G    D  V ++L++
Sbjct: 79  FVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALID 138

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            Y+   ++ +AR  FD+   R++V+W TM+DGY + G FE+A ++F+ +P +NA+SW+A+
Sbjct: 139 MYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTAL 198

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           +  + +    +E L  FR+MQ  G+ P+   +++V+ ACA+LG +  GLWVH        
Sbjct: 199 IGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDF 258

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
             NV ++ +++DMYS+CG +  A  VF+ +  +   +WN++I G A+NG A ++L  F+ 
Sbjct: 259 RNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNS 318

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           M + G +P   ++   L  C+HA ++ +GL +FE+M  V  + P++EHY C+VDL +RAG
Sbjct: 319 MQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAG 378

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
            +EEA   ++         +  + G+LL+ACR  G I +   V   L E+     S +VL
Sbjct: 379 RLEEALNVLKNMP---MKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYVL 435

Query: 375 SYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
             NIY   G WD  ANKVR+ + E G++KKPG S IE++  + +F++GD  H +   IY
Sbjct: 436 LSNIYAAVGKWD-GANKVRRRMKERGIQKKPGFSSIEIDSSIHKFVSGDKSHEEKDHIY 493



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 110/233 (47%), Gaps = 38/233 (16%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL---GAITQGLWV 185
           VSW+  +A Y +     +  S F QM+E  ++PN    +++L+ACAH     +I+ G  +
Sbjct: 57  VSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAI 116

Query: 186 HSYAKRYHLEKN-VILATAVVDMYSKCGHVHS---------------------------- 216
           H++ ++  L+ N V++ TA++DMY+KCG V S                            
Sbjct: 117 HAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNGK 176

Query: 217 ---ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
              AL VF+G+  K+A +W A+I G       +++LE F  M  SG  P   T +AV+  
Sbjct: 177 FEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIAA 236

Query: 274 CTHAKMVRDGLNLF-ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           C  A +   GL L+   +         ++    ++D+ +R G ++ A +  + 
Sbjct: 237 C--ANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDR 287


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/408 (37%), Positives = 240/408 (58%), Gaps = 4/408 (0%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T    + AC  L  LE  G  ++  VV   F     + ++L++ +     +  ARA+FD 
Sbjct: 150 TIVSTLSACSALKNLE-IGERIYRFVVT-EFEMSVRIGNALVDMFCKCGCLDKARAVFDS 207

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
             D++V  WT+MV GY   G  + AR LFE+ P ++ V W+A+M  Y + + F E L LF
Sbjct: 208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           R MQ  G++P+   LVS+LT CA  GA+ QG W+H Y     +  + ++ TA+VDMY+KC
Sbjct: 268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G + +AL VF  I  +D  +W ++I G+AMNG + ++L+L+  M   G +    TFVAVL
Sbjct: 328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           T C H   V +G  +F +M+  + V+P+ EH +C++DLL RAG+++EAE+ I++  G   
Sbjct: 388 TACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESD 447

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391
                V+ +LLSA R YG +++  RV  KL ++ ++D S H L  ++Y  A    +   V
Sbjct: 448 ETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNV 507

Query: 392 RKLISETGMKKKPGCSVIEVNGVVEEFLAGDN--RHAQAGEIYRVIHS 437
           R+ + + G++K PGCS IE++GV  EF+ GD+   H +  EI  ++H 
Sbjct: 508 RRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPKMDEINSMLHQ 555



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 168/407 (41%), Gaps = 107/407 (26%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           G  P+N+T P ++K+   +G L     G  VH + VK G   D +V +SL+  Y+ + K+
Sbjct: 41  GLYPDNFTLPVVLKS---IGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKI 97

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
                +FD+ P RDVV+W  ++  Y   G FE+A  +F++M                   
Sbjct: 98  EITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMS------------------ 139

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
                       QE  +K +E  +VS L+AC+ L  +  G  ++ +      E +V +  
Sbjct: 140 ------------QESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVT-EFEMSVRIGN 186

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG------------------------ 238
           A+VDM+ KCG +  A +VF+ + +K+   W +M+ G                        
Sbjct: 187 ALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVL 246

Query: 239 --VAMNGDAK-----KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL----NLF 287
               MNG  +     ++LELF  M  +G +P     V++LT C     +  G      + 
Sbjct: 247 WTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIN 306

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEK---------------MGGLG 331
           EN   V  V         +VD+ A+ G +E A E F E K               M G+ 
Sbjct: 307 ENRVTVDKVVG-----TALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMS 361

Query: 332 GG---------------DANVWGALLSACRIYGKIEVGNRVWRKLAE 363
           G                DA  + A+L+AC   G +  G +++  + E
Sbjct: 362 GRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTE 408



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 93/177 (52%), Gaps = 3/177 (1%)

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           F +VL+LF +++  G+ P+   L  VL +   L  + +G  VH YA +  LE +  ++ +
Sbjct: 27  FTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNS 86

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQP 262
           ++ MY+  G +     VF+ +  +D  +WN +IS    NG  + ++ +F RM + S  + 
Sbjct: 87  LMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKF 146

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            E T V+ L+ C+  K +  G  ++  +   + +  ++ +   +VD+  + G +++A
Sbjct: 147 DEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN--ALVDMFCKCGCLDKA 201



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 33/218 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY+Q N    ++  +  M   G  P+N+    L+  C   G LE  G ++H ++ + 
Sbjct: 250 MMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQ-GKWIHGYINEN 308

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y+    + TA  +F +  +RD  +WT+++ G              
Sbjct: 309 RVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAM----------- 357

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                 N +S  A              L L+ +M+ VG++ +    V+VLTAC H G + 
Sbjct: 358 ------NGMSGRA--------------LDLYYEMENVGVRLDAITFVAVLTACNHGGFVA 397

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
           +G  + HS  +R++++      + ++D+  + G +  A
Sbjct: 398 EGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEA 435


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/428 (37%), Positives = 262/428 (61%), Gaps = 14/428 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPN-NYTFPPLIKACVILGPLENF--GMFVHAH 56
           +I+G+   + P  S+  Y  ML  + +     ++ P ++KAC   G L  F  G  VH  
Sbjct: 78  LIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKAC---GKLLAFDEGRQVHGQ 134

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           V+K     DPFV +S++  Y    ++  AR +FD+ P+RDVV+W +M+ GY K G+ E A
Sbjct: 135 VLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           +++FE M +++ V+W+++++AY +     + L LFR+M  +G++P+   +VSVL+A A L
Sbjct: 195 KKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADL 254

Query: 177 GAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNA 234
           G + +G W+H+Y     +E  +  + +A++DMYSKCG++ +A  VF  IS+ ++ G WN+
Sbjct: 255 GFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNS 314

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MISG+A++G A+++L++F  M +   +P E TF+ +L+TC+H  +V +G   FE+M   Y
Sbjct: 315 MISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKY 374

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            + P+++HY C++DL  RAG +E+A   I+         D   W A+LSA   +G IE+G
Sbjct: 375 KIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMP---FEADLLAWKAILSASMKHGHIEIG 431

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNG 413
                +  E+   D S++VL  NIY +AG WD +  K+R ++ + G+KK  GCS + VNG
Sbjct: 432 KSAALRAIELAPDDSSSYVLLSNIYAKAGRWD-DVAKIRLMMRQRGVKKIAGCSSMLVNG 490

Query: 414 VVEEFLAG 421
            V EFL G
Sbjct: 491 KVHEFLLG 498


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 155/445 (34%), Positives = 256/445 (57%), Gaps = 6/445 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y+   FP+ ++  +  M ++G  P+      ++ AC +LG L      +H  + K 
Sbjct: 163 IIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDL-GVAKAMHCFIEKS 221

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV S+L+  Y     +  A   F ++P +++V W TM+    +  + E  ++LF
Sbjct: 222 GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLF 281

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP+R+ VSW++++  ++RI  ++E L+ F +M+  G+ PN   L+S L+ACA  GA+ 
Sbjct: 282 QSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALD 341

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H+Y  +  + ++  L ++++DMYSKCG +  A+ +FE  + +D   W +++ G+A
Sbjct: 342 TGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLA 401

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  +K+L  F +M ++  QP + T V VL+ C HA ++  G   F++M  V+G+ P++
Sbjct: 402 MHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKV 461

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY  +VDLL R G ++EA   I   MG     +  +WGA LSACR++  +E+G    R+
Sbjct: 462 EHYGXMVDLLGRMGCLKEAYDLI---MGMPMEANEIIWGAFLSACRVHNNVELGEVAARR 518

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L  +   D    V+  N+Y +EA WD  +  +RK I + G+KK PGCS IEVNG V  FL
Sbjct: 519 LLGLXPRDPWARVMLSNMYAEEAKWD-RSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFL 577

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNL 444
            GDN H    EI  ++    K+  L
Sbjct: 578 VGDNSHPCYTEINSMVEKIEKLMRL 602



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 162/388 (41%), Gaps = 90/388 (23%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y+  L  G  PN +TF  L+KA ++ G     G  VHA VV+ GF    FV  +LL FY 
Sbjct: 79  YMQGLRAGLRPNGHTFMYLLKA-LVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYV 137

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +G  R +FD+     +V WT ++  Y           +    PE+           
Sbjct: 138 ACGLVGKGRQVFDEMRQPGLVLWTLIIRAY-----------VCVTFPEK----------- 175

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                     L LFR M+EVG+ P+   + +V++AC  LG +     +H + ++  +E +
Sbjct: 176 ---------ALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVD 226

Query: 198 VILATAVVDMYSKCGH----------------------VHSAL---------SVFEGISN 226
             +++ ++  Y +CG                       +H ++          +F+ + +
Sbjct: 227 AFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPD 286

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT----------- 275
           +D  +WN+MI G A  G  +++L  F  M  SG  P   T ++ L+ C            
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           HA + ++ +N   ++             + ++D+ ++ G +++A +  EE        D 
Sbjct: 347 HAYVDKNDMNRDGSLD------------SSLIDMYSKCGDIDKAVQIFEEST----RRDL 390

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAE 363
             W +++    ++G+ E     + K+ E
Sbjct: 391 FTWTSIVCGLAMHGRGEKALHYFSKMKE 418



 Score = 45.4 bits (106), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 9/228 (3%)

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L  + Q    G++PN    + +L A      + +G  VH+   R     +  ++ A++  
Sbjct: 76  LLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGF 135

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y  CG V     VF+ +       W  +I         +K+LELF  M + G  P     
Sbjct: 136 YVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAV 195

Query: 268 VAVLTTC--THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
             V++ C       V   ++ F   S   G+E      + ++      G ++ A +F +E
Sbjct: 196 STVVSACGLLGDLGVAKAMHCFIEKS---GIEVDAFVSSTLISTYGECGSLDYAYRFFQE 252

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
                   +  VW  ++     +  +E+G ++++ + +  +  +++ +
Sbjct: 253 T----PMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMI 296


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 252/445 (56%), Gaps = 10/445 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP--NNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I G     F K S+  +  ML        + +T   L+ +C  LG  E     VH   +
Sbjct: 117 LISGLGHHGFRKESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQ-VHGAAI 175

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
             G   +  + ++L++ Y    +   + ++F + P+RDVV+WT+MV  Y +    E+A  
Sbjct: 176 IIGLNSNIIIGNALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHW 235

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF +M E+N VSW+A++A +++     E L LF QM+E G+ P+     SVL+ACA L  
Sbjct: 236 LFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLAL 295

Query: 179 ITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           I +G  +H +  R        N+ +  A++DMY KCG + SA ++F+G+  KD  +WN++
Sbjct: 296 IARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSL 355

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A NG  ++SL +F+RM+++  +P   TF+ +L+ C H  +V +GL + ++M   YG
Sbjct: 356 ITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYG 415

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           V P+ +HYA ++DLL R   +EEA   I  K    G     +WGALL ACRI+G +++  
Sbjct: 416 VCPRSDHYAIMIDLLGRNNRLEEAMGLI--KRAPKGSDHVGMWGALLGACRIHGNMDLAR 473

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           R    L ++   + + +V+ YNIY  A  WD EA +VR+L+ E G++K+  CS IEV   
Sbjct: 474 RAAEVLFQLEPGNAARYVMVYNIYAAASRWD-EARQVRRLMMERGLRKEAACSWIEVRNT 532

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
             +F+A +  H Q  E+Y VIH+ +
Sbjct: 533 RHQFVAKERSHCQINEVYEVIHNLV 557



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 167/381 (43%), Gaps = 50/381 (13%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
            +P +  +  LI  C+    L+  G  +H+H +K       F+ + L++FYS    + +A
Sbjct: 10  LDPAHQHYSSLISKCITTRHLK-LGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSA 68

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
             +F   P ++  +W  ++  Y + G F  A  L ++MP+ N VS++++++        K
Sbjct: 69  HKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRK 128

Query: 146 EVLSLFRQM--QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           E L++F+ M  Q   +  +E  LVS++ +CA LGA      VH  A    L  N+I+  A
Sbjct: 129 ESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNA 188

Query: 204 VVDMYSKCGHVHSALSVFEGISNKD-------------------------------AGAW 232
           ++D Y KCG    + S+F  +  +D                                 +W
Sbjct: 189 LIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSW 248

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            A+I+G A NG   ++L LF++M + G  P+  TF +VL+ C    ++  G  +  ++  
Sbjct: 249 TALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHI-- 306

Query: 293 VYGVEPQLEHYAC-------VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
              +      Y C       ++D+  + G +  A    +    G+   D   W +L++  
Sbjct: 307 ---IRSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFK----GMHEKDIVSWNSLITGF 359

Query: 346 RIYGKIEVGNRVWRKLAEMGI 366
              G  E    V+ ++ E  I
Sbjct: 360 AQNGHGEESLAVFERMIEADI 380


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/468 (32%), Positives = 267/468 (57%), Gaps = 37/468 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI+G++   +P  ++ CY+ ML+     P +YTF  L+KAC  +  +E  G  VH H+ K
Sbjct: 108 MIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCAVE-LGQMVHCHIWK 166

Query: 60  FGFGEDPFVVSSLLEFYS-------------------------------LVHKMGTARAL 88
            GF    FV ++L++FYS                                V  M +AR L
Sbjct: 167 KGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKL 226

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           F++ P+R+  TW TM+DGY ++G+ E+A  LF +MP ++ +SW+ ++  YS+   +++ L
Sbjct: 227 FEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDAL 286

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           +++ +M+  G+ P+E  + +V +ACAH+GA+  G  +H Y     L  +V + +A+VDMY
Sbjct: 287 AIYSEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMY 346

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG +  +L +F  +++K+   WNA+I G+A++G A+K+L +F  M +    P   TF+
Sbjct: 347 AKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFI 406

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           ++L+ CTHA +V +G + F +M+  Y + P + HY C+VD+L+++G + EA + I+    
Sbjct: 407 SILSACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSME- 465

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
                ++ +WGALL+ C+++G  E+      +L  +   +   + L  ++Y E    ME 
Sbjct: 466 --FEPNSIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEV 523

Query: 389 NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
             +R ++ E G++KK PG S IE+ G + +F A  + H  + +IY ++
Sbjct: 524 AHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFIL 571



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 31/328 (9%)

Query: 120 FEKMPERNAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           F +M   N   ++A++  +      F+ +      ++E  + P      S++ AC  + A
Sbjct: 94  FTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVKACTFMCA 153

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  VH +  +   E ++ + TA+VD YSK   +  A  VF+ +  +DA AW AM+S 
Sbjct: 154 VELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMCERDAFAWTAMLSA 213

Query: 239 VAMNGDAKKSLELFDRMVKSGT-------------------------QPTE--TTFVAVL 271
           +A  GD   + +LF+ M +  T                          PT+   ++  ++
Sbjct: 214 LARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMI 273

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           T  +  K  +D L ++  M  + G+ P     + V    A  G +E  ++     M    
Sbjct: 274 TCYSQNKQYQDALAIYSEMR-LNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGL 332

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV--LSYNIYKEAGWDMEAN 389
             D  +  AL+      G +++   ++ KL +  +  ++  +  L+ + Y E    M A 
Sbjct: 333 NLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAI 392

Query: 390 KVRKLISETGMKKKPGCSVIEVNGVVEE 417
             R+ I   G+      S     G+V+E
Sbjct: 393 MEREKIMPNGVTFISILSACTHAGLVDE 420



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLT 272
           VH  +  F  + N +   +NAMI G    G   ++L+ +  M+ +S   PT  TF +++ 
Sbjct: 87  VHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFSSLVK 146

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
            CT    V  G  +        G E  L     +VD  ++  ++ EA K  +E    +  
Sbjct: 147 ACTFMCAVELG-QMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDE----MCE 201

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
            DA  W A+LSA    G ++   +++ ++ E     ++T +  Y 
Sbjct: 202 RDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYT 246


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/433 (35%), Positives = 253/433 (58%), Gaps = 8/433 (1%)

Query: 7   QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP 66
           + N   +++  Y        +P+ +TFP ++K  V +  +  FG  VH   V FGF    
Sbjct: 93  ERNAHSIAITVYRKFWAFCAKPDTFTFPFVLKIVVRVSDVW-FGRQVHGQAVVFGFDSSV 151

Query: 67  FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-- 124
            VV+ L++ YS    +G AR +FD+   RDV  W  ++ GYGK+G+ + AR L E MP  
Sbjct: 152 HVVTGLIQMYSSCGGLGDARKVFDEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCW 211

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            RNAVSW+ +++ Y+R     E + +F++M    + P+E  L++VL+ACA LG++  G  
Sbjct: 212 VRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGER 271

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           + SY     + + V L  AV+DMY+K G++  AL VFE ++ ++   W  +I+G+A +G 
Sbjct: 272 ICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGH 331

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
             ++L +FDRMVK+G +P + TF+A+L+ C+H   V  G   F +M + YG+ P +EHY 
Sbjct: 332 GAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYG 391

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C++DLL RAG + EAE+ I+         +A +WG+LL+A  ++  I+VG R   +L ++
Sbjct: 392 CMIDLLGRAGKLREAEEVIKSMP---FESNAAIWGSLLAASNVHHDIDVGERALYQLIKL 448

Query: 365 GITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
              +   ++L  N+Y   G WD E+  +RK++   G+KK  G S IEV   V +F++GD 
Sbjct: 449 EPNNSGNYMLLANLYSNLGRWD-ESRMMRKMMKGIGVKKLAGESSIEVENRVYKFISGDL 507

Query: 424 RHAQAGEIYRVIH 436
            H Q  +I+ ++ 
Sbjct: 508 SHPQVEKIHELLQ 520



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/246 (21%), Positives = 110/246 (44%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY ++     ++  +  ML    +P+  T   ++ AC  LG LE  G  + ++V   
Sbjct: 221 VISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLE-LGERICSYVDHR 279

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + +++++ Y+    +  A  +F+   +R+VVTWTT++ G    G    A    
Sbjct: 280 GMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEA---- 335

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L +F +M + G+KPN+   +++L+AC+H+G + 
Sbjct: 336 ---------------------------LVMFDRMVKAGVKPNDVTFIAILSACSHVGWVD 368

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            G  + +S   +Y +  N+     ++D+  + G +  A  V + +    +A  W ++++ 
Sbjct: 369 LGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAA 428

Query: 239 VAMNGD 244
             ++ D
Sbjct: 429 SNVHHD 434


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 161/436 (36%), Positives = 242/436 (55%), Gaps = 6/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY QA     +   + +M   G   + +T   L+ AC   G LE  G  VH H++  
Sbjct: 186 MIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLE-VGRLVHCHMLVS 244

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + ++LL+ Y     +  A   FD  P ++VVTWT+M+    K G  +  R+ F
Sbjct: 245 GSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWF 304

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+MPERN VSW+A+++ Y +     E L L+ +M+ +G+ P+E  L  VL+AC   G + 
Sbjct: 305 EQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLA 364

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y +    +  V L  +++DMY++CG V +A+ +F  + NK+  +WN +I  +A
Sbjct: 365 SGKMIHCYVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALA 424

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A++++  F  MV     P E TFV +L+ C+H  ++  G   FE M+ VY VEP++
Sbjct: 425 MHGRAQETVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEV 484

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL R G + +A   I++        D  VWGALL ACRI+G +E+G  V ++
Sbjct: 485 EHYGCMVDLLGRRGHLAKAVNLIKDMS---IKPDVVVWGALLGACRIHGNVEIGKLVIKQ 541

Query: 361 LAEM-GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+ GIT     VL  N++ E     +  K+RKL+ E G KK  G S IEV  ++ EF 
Sbjct: 542 LLELEGITG-GLFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFG 600

Query: 420 AGDNRHAQAGEIYRVI 435
             D RH    EIY  +
Sbjct: 601 VEDLRHESTNEIYAAV 616



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 166/393 (42%), Gaps = 88/393 (22%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R Y  ++ P+ ++  +  +L  G  PN +T P ++KAC  +  +E+  +  H  VVK 
Sbjct: 85  LVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEH-ALAAHGVVVKL 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF +  FV ++LL F++                                 G   ++R  F
Sbjct: 144 GFVQQIFVANALLHFHA-------------------------------SAGSLRDSRRFF 172

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +RN VSW+ ++  Y++  +  E  +LF +M+  G+  +   LVS+L AC+  G + 
Sbjct: 173 GEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLE 232

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV-------------------------- 214
            G  VH +        + IL  A++DMY KCG +                          
Sbjct: 233 VGRLVHCHMLVSGSRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQA 292

Query: 215 -HSALSV----FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            H ++      FE +  ++  +WNAMIS     G   ++L+L++RM   G  P E T   
Sbjct: 293 KHGSVDAVRDWFEQMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAG 352

Query: 270 VLTTC------THAKM----VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           VL+ C         KM    VRD  N           +P +     ++D+ AR G V+ A
Sbjct: 353 VLSACGQNGDLASGKMIHCYVRDNFN-----------DPGVTLLNSLLDMYARCGQVDTA 401

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
                E    +   +   W  ++ A  ++G+ +
Sbjct: 402 IGLFTE----MPNKNVISWNVIIGALAMHGRAQ 430



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 108/240 (45%), Gaps = 29/240 (12%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L++ C  +  L+     +HAH+V  GF +   V S L+  Y  +            + DR
Sbjct: 16  LLRQCRSIQHLDQ----IHAHLVVHGFSDVSSVASQLIASYCTL-----------SAGDR 60

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D              G   +AR LF+++PE +   ++ ++ AYS     +E L L R + 
Sbjct: 61  D--------------GGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVL 106

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + G+ PNE  L  VL AC  + A+   L  H    +    + + +A A++  ++  G + 
Sbjct: 107 QRGILPNEFTLPFVLKACTTVRAVEHALAAHGVVVKLGFVQQIFVANALLHFHASAGSLR 166

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            +   F  +++++  +WN MI G A  G+  ++  LF  M   G      T V++L  C+
Sbjct: 167 DSRRFFGEMADRNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACS 226



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 25/225 (11%)

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           M A + +   + VL L RQ + +                 HL  I   L VH ++    +
Sbjct: 1   MLAPAAVVASRHVLELLRQCRSI----------------QHLDQIHAHLVVHGFSDVSSV 44

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
              +I +   +    + G +  A  +F+ I   D   +N ++   + +   +++L L   
Sbjct: 45  ASQLIASYCTLSAGDRDGGLCHARRLFDRIPEPDRFMYNTLVRAYSNSDCPQEALRLHRG 104

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           +++ G  P E T   VL  CT  + V   L     +    G   Q+     ++   A AG
Sbjct: 105 VLQRGILPNEFTLPFVLKACTTVRAVEHALAA-HGVVVKLGFVQQIFVANALLHFHASAG 163

Query: 315 MVEEAEKFIEE-------KMGGLGGGDANVWGALLSACRIYGKIE 352
            + ++ +F  E           + GG A   G +  AC ++G++ 
Sbjct: 164 SLRDSRRFFGEMADRNVVSWNTMIGGYAQA-GEVSEACALFGEMR 207


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 165/441 (37%), Positives = 238/441 (53%), Gaps = 37/441 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q + P  ++  +  M     +PN  T   ++ AC     LE     VH ++ + 
Sbjct: 209 MIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQ-VHKYIDET 267

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G    + S+L+                               D Y K G +  AR+LF
Sbjct: 268 GIGFHTVLTSALM-------------------------------DVYCKCGCYPLARDLF 296

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KMPE+N   W+ ++  +   SD++E LSLF +MQ  G+K ++  + S+L AC HLGA+ 
Sbjct: 297 NKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALE 356

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H Y ++  +E +V L TA+VDMY+KCG + SA+ VF+ +  KD   W A+I G+A
Sbjct: 357 LGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLA 416

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M G   K+LELF  M  S  +P   TFV VL  C+HA +V +G+  F +M   YG++P +
Sbjct: 417 MCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSI 476

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VD+L RAG + EAE  I+         D  V   LLSACRI+G + V  R  ++
Sbjct: 477 EHYGCMVDMLGRAGRIAEAEDLIQNMP---MAPDYFVLVGLLSACRIHGNLVVAERAAQQ 533

Query: 361 LAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +  T+VL  NIY     W+  A K+R+L+ E  +KK PGCS IEV GVV EF+
Sbjct: 534 LIELDPKNGGTYVLLSNIYSSMKNWE-AAKKMRELMVERNIKKPPGCSAIEVGGVVHEFV 592

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
            GD  H Q+ EIY  +   ++
Sbjct: 593 KGDVSHPQSSEIYETLDDMMR 613



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 177/376 (47%), Gaps = 43/376 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY   N P+ ++  Y  M+  G +P+ +TFP L K+C +L      G  +H H  K 
Sbjct: 111 IIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE----GKQLHCHSTKL 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D ++ ++L+  YS                                 G   +AR++F
Sbjct: 167 GFASDAYIQNTLMNMYS-------------------------------NCGCLVSARKVF 195

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KM  ++ VSW+ ++ AY++     E + LFR+M+   +KPNE  LV+VLTACA    + 
Sbjct: 196 DKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLE 255

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
               VH Y     +  + +L +A++D+Y KCG    A  +F  +  K+   WN MI+G  
Sbjct: 256 TAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHV 315

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            + D +++L LF+ M  SG +  + T  ++L  CTH   +  G  L   +     +E  +
Sbjct: 316 EDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK-EKIEVDV 374

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                +VD+ A+ G +E A +  +E    +   D   W AL+    + G+   G +    
Sbjct: 375 ALGTALVDMYAKCGSIESAMRVFQE----MPEKDVMTWTALIVGLAMCGQ---GLKALEL 427

Query: 361 LAEMGITDFSTHVLSY 376
             EM +++     +++
Sbjct: 428 FHEMQMSEVKPDAITF 443



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 142/349 (40%), Gaps = 68/349 (19%)

Query: 37  IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRD 96
           ++ C  +  L+     +HA +++     DPF  S ++ F           AL D      
Sbjct: 47  LEKCTTMSQLKQ----IHAQMLRTCLFVDPFSASKIVAFC----------ALHDS----- 87

Query: 97  VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
                         G    AR +F ++P     + ++I+  Y+  +  ++ +  ++ M  
Sbjct: 88  --------------GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMML 133

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
            G+ P+     S+  +C   G + +G  +H ++ +     +  +   +++MYS CG + S
Sbjct: 134 QGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVS 190

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           A  VF+ + NK   +W  MI   A      ++++LF RM  +  +P E T V VLT C  
Sbjct: 191 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACAR 250

Query: 277 AKMVRDGLNLFENM------------SAVYGVEPQLEHYACVVDLLARA----------- 313
           ++ +     + + +            SA+  V  +   Y    DL  +            
Sbjct: 251 SRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIM 310

Query: 314 --GMVEEAEK------FIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
             G VE+++       F E ++ G+  GD     +LL AC   G +E+G
Sbjct: 311 INGHVEDSDYEEALSLFNEMQLSGV-KGDKVTMASLLIACTHLGALELG 358


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/437 (36%), Positives = 243/437 (55%), Gaps = 41/437 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++ +     ++  Y  ML     P+NY    ++KAC     L   G  VH+  +K 
Sbjct: 108 LIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALRE-GREVHSRALKL 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V   ++E Y                               GK G+  +AR +F
Sbjct: 167 GFSSNRLVRLRIMELY-------------------------------GKCGELGDARRVF 195

Query: 121 EKMPE----RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           E+MPE    ++ V W+A++  + R  +    L  FR MQ   ++PNE  +V VL+AC+ L
Sbjct: 196 EEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 255

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G WVHSY +++ +E N+ +  A+++MYS+CG +  A +VF+ + ++D   +N MI
Sbjct: 256 GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 315

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           SG++MNG +++++ELF  MV    +PT  TFV VL  C+H  +V  G  +F +M+  Y V
Sbjct: 316 SGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRV 375

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           EPQ+EHY C+VDLL R G +EEA   I   KM      D  + G LLSAC+++  +E+G 
Sbjct: 376 EPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKM----TPDHIMLGTLLSACKMHKNLELGE 431

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           +V ++L + G  D  T+VL  ++Y  +G   EA +VR  + E GM+K+PGCS IEVN  +
Sbjct: 432 QVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 491

Query: 416 EEFLAGDNRHAQAGEIY 432
            EFL GD RH Q   IY
Sbjct: 492 HEFLLGDLRHPQKERIY 508



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 40/311 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +++ G  +DPF+V  LL   S  H +  A  +F  + + +V  +T ++DG+   G+
Sbjct: 58  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 117

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           +                                E + L+ +M    + P+   + S+L A
Sbjct: 118 Y-------------------------------LEAIQLYSRMLHESILPDNYLMASILKA 146

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN----KD 228
           C    A+ +G  VHS A +     N ++   ++++Y KCG +  A  VFE +      KD
Sbjct: 147 CGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 206

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
              W AMI G   N +  ++LE F  M     +P E T V VL+ C+    +  G  +  
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 266

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M   + +E  L     ++++ +R G ++EA+   +E    +   D   +  ++S   + 
Sbjct: 267 YMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDE----MKDRDVITYNTMISGLSMN 321

Query: 349 GKIEVGNRVWR 359
           GK      ++R
Sbjct: 322 GKSRQAIELFR 332



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           ++  ++S+L    H   I Q L +H+   R    ++  +   ++   SKC  +  A  +F
Sbjct: 38  DQKQIISLLQRSRH---INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 94

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           +   N +   + A+I G   +G+  ++++L+ RM+     P      ++L  C     +R
Sbjct: 95  QYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALR 154

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
           +G  +      +     +L     +++L  + G + +A +  EE    +   D   W A+
Sbjct: 155 EGREVHSRALKLGFSSNRLVRLR-IMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 213

Query: 342 L 342
           +
Sbjct: 214 I 214


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 253/437 (57%), Gaps = 6/437 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIR +++ + P+ S+  Y  M       PN +T   +++AC     +   G  V  HV+K
Sbjct: 103 MIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIRE-GAQVQTHVIK 161

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARE 118
            GF +D FV ++L+  Y    ++ +A+ +FD+ P  RDVV+W +M+ G+ ++G    A++
Sbjct: 162 LGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQK 221

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF +MPE++ +SW  I++   +  + ++ L  F+++ E  ++PNE+ LVS+L A A LG 
Sbjct: 222 LFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGT 281

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +HS A          L TA+VDMY+KCG +  +  +F+ +  KD  +WN MI G
Sbjct: 282 LEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICG 341

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G  +++L LF++ +  G  P   TF+ VLT C+ A +V +G + F+ M+  YG+EP
Sbjct: 342 LATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEP 401

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           ++EHY C+VDLL+RAG V +A + I          D  +W ++L +C+++G IE+G  + 
Sbjct: 402 EMEHYGCMVDLLSRAGFVYDAVEMINRMP---APPDPVLWASVLGSCQVHGFIELGEEIG 458

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            KL +M  T    +V    I+       + +KVR+L++E    K  G S+IE  G V  F
Sbjct: 459 NKLIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRF 518

Query: 419 LAGDNRHAQAGEIYRVI 435
           +AGD  H +  EIY+++
Sbjct: 519 VAGDKEHERTTEIYKML 535


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 137/339 (40%), Positives = 215/339 (63%), Gaps = 3/339 (0%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++D Y K G+   AR LF+ M  R+ V+WSA+++ Y++    +E L+LF +MQ   ++
Sbjct: 259 TALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVE 318

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           PN+  +VSVL+ACA LGA+  G WVHSY +R  L   +IL TA+VD Y+KCG +  A+  
Sbjct: 319 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEA 378

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           FE +  K++  W A+I G+A NG  +++LELF  M K+  +PT+ TF+ VL  C+H+ +V
Sbjct: 379 FESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLV 438

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
            +G   F++M+  YG++P+ EHY CVVDLL RAG+++EA +FI          +A +W A
Sbjct: 439 EEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMP---IEPNAVIWRA 495

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
           LLS+C ++  +E+G    +++  +  +    ++L  NIY   G    A  +RK + + G+
Sbjct: 496 LLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGI 555

Query: 401 KKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           +K PGCS+IE++GVV EF A D+ H Q  EIY+ +   +
Sbjct: 556 EKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVEEMI 594



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 165/336 (49%), Gaps = 56/336 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++R  + A  P+ ++  +++MLD+    P+ +T    +K+C  +  L + G  + A+ VK
Sbjct: 89  LMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTL-DVGRGIQAYAVK 147

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D FV+SSL+  Y+                 RDV                  A+ L
Sbjct: 148 RGLMADRFVLSSLIHMYASC---------------RDVAA----------------AQLL 176

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ + E   V W+AI+ AY +  ++ EV+ +F+ M EVG+  +E  LVSV+TAC  +G  
Sbjct: 177 FDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDA 236

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WV  Y     L +N  L TA++DMY+KCG +  A  +F+G+ ++D  AW+AMISG 
Sbjct: 237 KLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGY 296

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNLFE 288
                 +++L LF  M  +  +P + T V+VL+ C            H+ + R  L+L  
Sbjct: 297 TQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSL-- 354

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             + + G          +VD  A+ G +++A +  E
Sbjct: 355 --TIILGTA--------LVDFYAKCGCIDDAVEAFE 380



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 34/258 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY QA+  + ++  + +M     EPN+ T   ++ AC +LG LE  G +VH+++ + 
Sbjct: 292 MISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALET-GKWVHSYIRRK 350

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  + ++L++FY+    +  A   F+  P ++  TWT ++ G              
Sbjct: 351 RLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKG-------------- 396

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                         MA   R    +E L LF  M++  ++P +   + VL AC+H   + 
Sbjct: 397 --------------MATNGR---GREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVE 439

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G     S  + Y ++        VVD+  + G +  A      +    +A  W A++S 
Sbjct: 440 EGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSS 499

Query: 239 VAMNGDAKKSLELFDRMV 256
            A++ + +   E   ++V
Sbjct: 500 CAVHKNVEIGEEALKQIV 517



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 104/221 (47%), Gaps = 6/221 (2%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQG 182
           P  +   ++ +M A       ++ L LF +M +V  + P++  +   L +C+ +  +  G
Sbjct: 79  PPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVG 138

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             + +YA +  L  +  + ++++ MY+ C  V +A  +F+ +       WNA+I+    N
Sbjct: 139 RGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKN 198

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G+  + +E+F  M++ G    E T V+V+T C      + G  + E +    G+      
Sbjct: 199 GNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDE-KGLVRNRNL 257

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
              ++D+ A+ G + +A +  +    G+   D   W A++S
Sbjct: 258 MTALIDMYAKCGELGKARRLFD----GMQSRDVVAWSAMIS 294


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 163/422 (38%), Positives = 252/422 (59%), Gaps = 26/422 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHV 57
           +IR   ++N P  ++  +++M+ D   EPN +TFP + KAC   G  E    G  VH   
Sbjct: 59  LIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKAC---GRAERLREGRQVHGLA 115

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALF---------------DKSPDRDVVTWTT 102
           VKFG   D FVVS+++  Y     M  A  LF                +  D DVV W  
Sbjct: 116 VKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNV 175

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           M+DGY ++G+ E AR LF++MP+R+ VSW+ ++A Y++   FKE + +FR+MQ   + PN
Sbjct: 176 MIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPN 235

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
              LVSVL A + LGA+  G WVH YA R ++  + +L +A++DMY+KCG +  AL VFE
Sbjct: 236 YVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFE 295

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
           G+  ++   W+ +I+G+AM+G AK +L+ F+ M ++G  P++ T++ +L+ C+HA +V +
Sbjct: 296 GLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNE 355

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G   F++M  V G+EP++EHY C+VDLL RAG++EE+E+ I          D  +W ALL
Sbjct: 356 GRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMP---IKPDDVIWKALL 412

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMK 401
            AC+++G +E+G RV   L E+   D  ++V   NIY   G W+  A KVR ++ E  + 
Sbjct: 413 GACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVA-KVRLMMKEMDVS 471

Query: 402 KK 403
            +
Sbjct: 472 AR 473



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/347 (20%), Positives = 138/347 (39%), Gaps = 85/347 (24%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K     DP   + LL F ++                                 D
Sbjct: 7   LHAQMIKTAQIRDPLAAAELLRFSAV-----------------------------SDHRD 37

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLT 171
            + AR++F  M   N  S++ ++ A S  +D  + L +F +M ++  ++PN     SV  
Sbjct: 38  LDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFK 97

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC-------------------- 211
           AC     + +G  VH  A ++ L+ +  + + VV MY  C                    
Sbjct: 98  ACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCD 157

Query: 212 --------------------------GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
                                     G +  A ++F+ +  +   +WN MI+G A +G  
Sbjct: 158 GIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF 217

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHY 303
           K+++E+F  M  +   P   T V+VL   +    +  G  ++L+   + + GV+  L   
Sbjct: 218 KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNI-GVDDVLG-- 274

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           + ++D+ A+ G +E+A +  E    GL   +   W  +++   ++G+
Sbjct: 275 SALIDMYAKCGSIEKALQVFE----GLPKRNVVTWSTIIAGLAMHGR 317


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 156/420 (37%), Positives = 240/420 (57%), Gaps = 7/420 (1%)

Query: 22  LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81
           LDMGF  N ++F  ++  CV L  L+     VH  V+  GF  +  + SS+++ Y+   +
Sbjct: 189 LDMGF--NAFSFAGVLILCVKLKELQ-LAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGE 245

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           M  AR LFD+   +D+  WTT+V GY K GD  +A ELF +MPE+N VSWSA+++ Y+R 
Sbjct: 246 MRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARN 305

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
           S   E L  F +M + G+ P +    S L ACA + A+  G  VH Y  R +   N I+ 
Sbjct: 306 SLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVV 365

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           ++++DMYSKCG + ++  VF  + NK D   WN MIS +A NG  +K++++F+ MV+SG 
Sbjct: 366 SSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P   TF+ +L+ C+H+ +V++GL  F+ M+  +GV P  EHY+C++DLL RAG   E  
Sbjct: 426 KPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVE-- 483

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
             + E        D  VW ALL  CRI+  IE+G +V  ++ E+     + +V   ++Y 
Sbjct: 484 -LVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAYVSLASLYA 542

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
             G      KVR+L+ E  ++K+ G S I+V      F+A D  H    EIY ++    +
Sbjct: 543 FLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIYLLLEQLAR 602



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 175/393 (44%), Gaps = 40/393 (10%)

Query: 7   QANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           Q   P+     YLD L   G       F  L++ C      +  G  VH H+   GF   
Sbjct: 40  QGRLPE--ALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKG-GKCVHLHLKHTGFKRP 96

Query: 66  PFVVSS-LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
             +V++ L+  Y    +   AR +FDK   R++ +W  M+ GY K+GD  NAR+LF++M 
Sbjct: 97  TTIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMM 156

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           E++ VSW+ I+ AY++   F E + L+R  + + M  N      VL  C  L  +     
Sbjct: 157 EKDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQ 216

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA------------- 231
           VH          N++L++++VD Y+KCG +  A ++F+ +  KD  A             
Sbjct: 217 VHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGD 276

Query: 232 ------------------WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
                             W+A+ISG A N    ++L+ F +M+K G  P + TF + L  
Sbjct: 277 MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C     ++ G  +   +   Y         + ++D+ ++ GM+ EA   +   MG     
Sbjct: 337 CASIAALKHGKQVHGYLIRTY-FRCNTIVVSSLIDMYSKCGML-EASCCVFHLMG--NKQ 392

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           D  VW  ++SA    G  E   +++  + E G+
Sbjct: 393 DVVVWNTMISALAQNGHGEKAMQMFNDMVESGL 425



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/266 (21%), Positives = 118/266 (44%), Gaps = 35/266 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY + +    ++  +  M+  G  P  YTF   + AC  +  L++ G  VH ++++ 
Sbjct: 298 LISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKH-GKQVHGYLIRT 356

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENAREL 119
            F  +  VVSSL++ YS    +  +  +F    ++ DVV W TM+    + G  E A   
Sbjct: 357 YFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKA--- 413

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                       + +F  M E G+KP+    + +L+AC+H G +
Sbjct: 414 ----------------------------MQMFNDMVESGLKPDRITFIVILSACSHSGLV 445

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMIS 237
            +GL +  +    + +  +    + ++D+  + G     ++  E +S K D   W+A++ 
Sbjct: 446 QEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLG 505

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPT 263
              ++ + +   ++ +R+++   Q +
Sbjct: 506 VCRIHNNIELGRKVAERVIELKPQSS 531


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 145/364 (39%), Positives = 227/364 (62%), Gaps = 6/364 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM-PERNA 128
           +S++  Y  +  + +AR +FD +P +DVV+W  ++DGY K      A+ELF  M   RN+
Sbjct: 111 NSMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNS 170

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           V+W+ +++AY +  +F   +S+F+QMQ   +KP E  +VS+L+ACAHLGA+  G W+H Y
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGY 230

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
            +   L+ +V+L  A++DMY KCG + +A+ VF G+S K+   WN++I G+ MNG  +++
Sbjct: 231 IRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 290

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           +  F  M K G +P   TFV +L+ C+H+ ++  G   F  M  VYG+EP +EHY C+VD
Sbjct: 291 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 350

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           LL RAG ++EA + I          ++ V G+LL AC+I+   ++G +V ++L E+   D
Sbjct: 351 LLGRAGYLKEALELIRAMP---MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD 407

Query: 369 FSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
              +V   N+Y   + WD + N  RKL+ + G+ K PGCS IEVN +V EF+AGD  H Q
Sbjct: 408 GGNYVFLSNLYASLSRWD-DVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQ 466

Query: 428 AGEI 431
             +I
Sbjct: 467 FTQI 470



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 115/257 (44%), Gaps = 41/257 (15%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML     P+  +F  ++++C I G  +  G   H  ++K GF  D  + + LL+FY+ V 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQ-LGEAFHCQIMKMGFEYDMILQTGLLDFYAKVG 59

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
            +  A+ +F   P RDVV    M+    K G  E AR LF+ M ERN+ SW++++  Y +
Sbjct: 60  DLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYCK 119

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
           + D      +F                     C  +                   K+V+ 
Sbjct: 120 LGDINSARLMFD--------------------CNPV-------------------KDVVS 140

Query: 201 ATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
             A++D Y K   + +A  +F  + S +++  WN MIS     G+   ++ +F +M    
Sbjct: 141 WNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN 200

Query: 260 TQPTETTFVAVLTTCTH 276
            +PTE T V++L+ C H
Sbjct: 201 VKPTEVTMVSLLSACAH 217



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 37/239 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y+Q      ++  +  M     +P   T   L+ AC  LG L+  G ++H ++   
Sbjct: 176 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALD-MGEWIHGYIRT- 233

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                         K    DVV    ++D Y K G  E A ++F
Sbjct: 234 ------------------------------KRLKIDVVLGNALIDMYCKCGALEAAIDVF 263

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  +N   W++I+         +E ++ F  M++ G+KP+    V +L+ C+H G ++
Sbjct: 264 HGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLS 323

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G  +       Y LE  V     +VD+  + G++  AL +   +  K     N+M+ G
Sbjct: 324 AGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 378


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 253/467 (54%), Gaps = 40/467 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG    +    ++F +  ML  G +P+  T+P ++K+   L   E  GM +H  +++ 
Sbjct: 150 LIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTE-LGMAIHCMILRC 208

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR------------------------- 95
           G   D FV  SL++ Y  V K+G+A  +FD+SP+R                         
Sbjct: 209 GIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKK 268

Query: 96  -----------DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                      + V+W+T++DG+ K GD + A ELF++MPE+N VSW+ ++  +SR  D 
Sbjct: 269 AVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDS 328

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           ++ LS+F +M E G++PN   +VS L+ACA +G +  GL +H Y K   L     L TA+
Sbjct: 329 EKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTAL 388

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           VDMY+KCG++ SA  VF     K    W  MI G A++G +++++  F +M+ +G +P E
Sbjct: 389 VDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDE 448

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             F+A+LT C H+  V  GLN F++M   Y +EP ++HY  +VD+L R+G ++EA +FIE
Sbjct: 449 VVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIE 508

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
                    D  +WGAL  ACR + K ++      KL ++  T    ++   N Y   G 
Sbjct: 509 RMP---MNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQ 565

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             +A +VR L+   G+ K  G S IEV G V  F++GD+ H  +  I
Sbjct: 566 WEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAI 612



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/314 (23%), Positives = 130/314 (41%), Gaps = 23/314 (7%)

Query: 66  PFVVSSLLEFYSLVHKMGT--------ARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           P    +   F SL+H   T        A+ +        ++T T ++          ++ 
Sbjct: 75  PPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLIT-TQLISSSSLRKSINHSL 133

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            +F     +N  +++A++   +  S F   +  FR M   G+KP+      VL + A L 
Sbjct: 134 AVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLF 193

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGA----W 232
           +   G+ +H    R  +E +  +  ++VDMY K   + SA  VF+    + D+G+    W
Sbjct: 194 STELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLW 253

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N +I G    G  KK+++LF  M K       T          +  M R  + LF+ M  
Sbjct: 254 NVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGF---AKNGDMDR-AMELFDQMP- 308

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
               E  +  +  +VD  +R G  E+A     + +      +A    + LSAC   G +E
Sbjct: 309 ----EKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLE 364

Query: 353 VGNRVWRKLAEMGI 366
            G R+ + + + G+
Sbjct: 365 AGLRIHKYIKDNGL 378


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 258/442 (58%), Gaps = 10/442 (2%)

Query: 1   MIRGYMQANFPKLS--VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           ++ GY +A     +  +FC + ++  G  PN  T    + A   +G L  FG+ +H +V 
Sbjct: 215 LVDGYARAGLADEAWRLFCRMVVVG-GMRPNAVTLVAAVSAIGQMGLLA-FGIMLHKYVT 272

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + G      + ++L++ +     +  AR +FD    +DV +WT+MV+ Y K GD E+A +
Sbjct: 273 EGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQ 332

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+ MP RN VSWS ++AAYS+++  +E + LFR+M   G+ P ++ LVSVL+ACA LG 
Sbjct: 333 LFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGC 392

Query: 179 ITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +  G W++ +Y     +   V L  A++DM++KCG V  A  +F+ ++ ++  +WN MI 
Sbjct: 393 LDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIM 452

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A++G +++++ LF+++      P + TF+ +L +C+H+ +V +G   F+ M   Y +E
Sbjct: 453 AHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIE 512

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHYAC++DLL + G++EEA    E   G     D   WGALL+ACR++G +E+G  V
Sbjct: 513 PRVEHYACMIDLLGKVGLLEEA---FEVARGMPMEADEAGWGALLNACRMHGNVEIGACV 569

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             KL E+  +D   +VL   IY     WD +   +R  + + G+KK PGCS IEV G   
Sbjct: 570 ADKLVELDPSDSGIYVLMSQIYASKNKWD-QVKMLRMTMRDRGVKKNPGCSSIEVEGKFH 628

Query: 417 EFLAGDNRHAQAGEIYRVIHSF 438
           +FL  D  HA + EIY  + + 
Sbjct: 629 DFLVADVSHACSEEIYSALKNI 650



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 177/400 (44%), Gaps = 75/400 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVIL-----GPLENFGMFVHA 55
           M+RG+++A  P  ++  +  ++      +  TF   +KA         G   + G  +H 
Sbjct: 107 MMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHC 166

Query: 56  HVVKFGF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE 114
             +K GF GE   V ++L+ FY+    +  A  +FD+ P+RDVV+WTT+VDGY + G  +
Sbjct: 167 AALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLAD 226

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
            A  LF +M                              +   GM+PN   LV+ ++A  
Sbjct: 227 EAWRLFCRM------------------------------VVVGGMRPNAVTLVAAVSAIG 256

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            +G +  G+ +H Y     + ++V L  A+VDM+ KCG V  A  VF+G+  KD  +W +
Sbjct: 257 QMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTS 316

Query: 235 MISGVAMNGD-------------------------------AKKSLELFDRMVKSGTQPT 263
           M++  A  GD                                ++++ LF  M+ +G  P 
Sbjct: 317 MVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPI 376

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + T V+VL+ C     +  G  ++EN      +   +     ++D+ A+ G V EA K  
Sbjct: 377 DATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLF 436

Query: 324 EEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKL 361
           +E        + NV  W  ++ A  ++G+ E   R++ +L
Sbjct: 437 DEM------AERNVVSWNTMIMAHAVHGQSEEAIRLFEQL 470


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 247/437 (56%), Gaps = 12/437 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           MI G+  +     +V  +LDM   GFEP+  T   ++ A   +G LE+   G+ +H +V+
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPA---VGDLEDLVMGILIHGYVI 277

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D  V S+L++ Y           +FD+    DV +    + G  + G  E++  
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337

Query: 119 LFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           LF ++ ++    N VSW++++A  S+     E L LFR+MQ  G+KPN   +  +L AC 
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACG 397

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           ++ A+  G   H ++ R  +  +V + +A++DMY+KCG + ++   F+GI  K+   WNA
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNA 457

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I+G AM+G AK+++E+FD M +SG +P   +F  VL+ C+ + +  +G   F +MS+ Y
Sbjct: 458 VIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKY 517

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+E ++EHYAC+V LL+RAG +E+A   I          DA VWGALLS+CR++  + +G
Sbjct: 518 GIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP---VNPDACVWGALLSSCRVHNNVSLG 574

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL E+  ++   ++L  NIY   G   E N+VR ++   G++K PGCS IEV   
Sbjct: 575 EVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNK 634

Query: 415 VEEFLAGDNRHAQAGEI 431
           V   LAGD  H Q  +I
Sbjct: 635 VHMLLAGDKSHPQMTQI 651



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 6/294 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  ML  G  P+N   P  +KAC  L  L+     VH      GF  D FV SSL+  Y 
Sbjct: 102 FSQMLTRGLMPDNRVLPSAVKACAGLSALKP-ARQVHGIASVSGFDSDSFVQSSLVHMYI 160

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER----NAVSWSA 133
             +++  A  +FD+  + DVV+W+ +V  Y + G  + A+ LF +M +     N +SW+ 
Sbjct: 161 KCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNG 220

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           ++A ++    + E + +F  M   G +P+ + + SVL A   L  +  G+ +H Y  +  
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           L  +  +++A++DMY KC        VF+ + + D G+ NA I G++ NG  + SL LF 
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           ++   G +    ++ +++  C+      + L LF  M  + GV+P      C++
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQ-IAGVKPNSVTIPCLL 393



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D    T ++  Y     F +A  + + +PE N  S+S ++ A+S+   F   LS F QM 
Sbjct: 47  DTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQML 106

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G+ P+   L S + ACA L A+     VH  A     + +  + +++V MY KC  + 
Sbjct: 107 TRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIR 166

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  VF+ +   D  +W+A+++  A  G   ++  LF  M  SG QP   ++  ++    
Sbjct: 167 DAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFN 226

Query: 276 HAKMVRDGLNLFENMSAVYGVEP 298
           H+ +  + + +F +M  + G EP
Sbjct: 227 HSGLYSEAVLMFLDMH-LRGFEP 248


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 163/436 (37%), Positives = 250/436 (57%), Gaps = 6/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY QA   +     + +M   GF  + +T   L+ AC   G LE  G  VH  ++  
Sbjct: 184 MIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLE-IGRLVHCRMLVS 242

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + S+L++ Y     +  AR  F+  P + VV+WT+M+    K G    AR  F
Sbjct: 243 GSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWF 302

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPERN VSW+A+++ Y +     E L L+ QMQ  G+ P+E  LV+VL+A   +G +T
Sbjct: 303 DHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLT 362

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y +      +V L  +++DMY+KCG V +A+S+F  + N++  +WN +I G+A
Sbjct: 363 VGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLA 422

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A  ++  F  MV     P   TFVA+L+ C+H  ++  G + FE+M  VY V+ ++
Sbjct: 423 MHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEV 482

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G +E+A   I+E        D  VWGALL ACRI+G +++G +V ++
Sbjct: 483 EHYACMVDLLGRRGHLEKAVCLIKEMP---MKPDVVVWGALLGACRIHGNVKIGRQVIKQ 539

Query: 361 LAEM-GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+ GI+     ++S  +Y+   W+ +  ++RKL+ E G +K  G S IE+N  + EF 
Sbjct: 540 LLELEGISGGLFVLISNLLYETHQWE-DMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFG 598

Query: 420 AGDNRHAQAGEIYRVI 435
             D RH ++ EIY V+
Sbjct: 599 VEDIRHERSSEIYAVV 614



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 159/362 (43%), Gaps = 76/362 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  ++ P+ ++  +  ML  G  PN +T P ++KAC I    E+  + VH   ++ 
Sbjct: 83  IIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREH-ALAVHGVALRL 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G     FV ++LL  Y+    +G +R  FD+  DR+VV+W +M+ GY + G         
Sbjct: 142 GLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMIGGYAQAG--------- 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                 D +EV SLF +M+  G   +E  LVS+L AC+  G + 
Sbjct: 193 ----------------------DTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLE 230

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKC----------------------------- 211
            G  VH          ++IL +A+VDMY KC                             
Sbjct: 231 IGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQT 290

Query: 212 --GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
             G V++A   F+ +  ++  +WNAMIS     G   ++L+L+++M   G  P E T VA
Sbjct: 291 KHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVA 350

Query: 270 VLTTC------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           VL+        T  KMV   L + +N+       P +     ++D+ A+ G V+ A    
Sbjct: 351 VLSASGRIGDLTVGKMVH--LYIRDNI-----YNPDVSLVNSLLDMYAKCGQVDTAISLF 403

Query: 324 EE 325
            E
Sbjct: 404 SE 405



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 5/266 (1%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G   +AR LF+ +P  + V ++ I+ AY   S  +E L L R M   G+ PNE  L  V+
Sbjct: 60  GVLCHARRLFDGIPGPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVV 119

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC    A    L VH  A R  L   V +  A++  Y+  G +  +   F+ + +++  
Sbjct: 120 KACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVV 179

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN+MI G A  GD ++   LF  M + G    E T V++L  C+    +  G  L    
Sbjct: 180 SWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIG-RLVHCR 238

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
             V G    L   + +VD+  + G +  A +  E     +       W ++L A   +G 
Sbjct: 239 MLVSGSRVDLILESALVDMYGKCGDLWMARRCFEM----MPIKSVVSWTSMLCAQTKHGS 294

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLSY 376
           +      +  + E  I  ++  +  Y
Sbjct: 295 VNAARCWFDHMPERNIVSWNAMISCY 320


>gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g10330-like [Vitis vinifera]
          Length = 531

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 172/457 (37%), Positives = 253/457 (55%), Gaps = 20/457 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           +IRGY+    P  ++  +  ML     PNN TFP +IK      P   F  G  +H HV+
Sbjct: 63  LIRGYLNFVEPHKTLLIFTHMLAHQAPPNNLTFPSIIKKAASCSPSLAFMIGTPLHTHVI 122

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D F+ +SL+  Y+ + K+  A  +F++     VV+   M+D  GK GD  +A  
Sbjct: 123 KRGLSHDLFIQTSLVVLYARLCKVSDACRVFEEISRPCVVSSNAMLDALGKNGDMGSALF 182

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM------QEVGMKPNESGLVSVLTA 172
           LFE MPER+ VSW++I+  + R   F+E +  F +M      +   +KPNE+  VSVL++
Sbjct: 183 LFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEATFVSVLSS 242

Query: 173 CAHL---GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           C +L   GA+ QG  +H Y  R  +E  V + TA++ +Y K G + +A+ +F G+  K  
Sbjct: 243 CTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENAMKIFNGMVVKGV 302

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
             WNAMIS +A NG  K++L+LF++M   G  P E TFVAV+T C  +K V  GL  F++
Sbjct: 303 CTWNAMISSLACNGREKQALDLFEKMKMQGLCPDEVTFVAVITACARSKFVVLGLGFFQS 362

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   +GV P++ HY CVVDLL RAG++EEA +FI+         DA V GALL AC+++G
Sbjct: 363 MWCDFGVVPRMVHYGCVVDLLGRAGLLEEATEFIKRMP---FEPDATVLGALLGACKVHG 419

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
            IE+GN V R+L E+       +V   NIY        A   RK ++E G+ K P  S+ 
Sbjct: 420 AIELGNEVGRRLLELQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGISKIPAYSMN 479

Query: 410 EVNGVVEEF-----LAGDNRHAQAGEIYRVIHSFLKM 441
                  EF     L+G +      E+Y ++H FL++
Sbjct: 480 PAISATLEFSYKWALSGTSPQNLVAELYSLVH-FLQI 515


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 147/438 (33%), Positives = 253/438 (57%), Gaps = 22/438 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +    + ++  Y  M   G +P++ T   L+ +C +LG L N G   + +V   
Sbjct: 153 LINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDL-NRGKEFYEYVKAN 211

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ +S    +  AR +FD    R +V+                  +LF
Sbjct: 212 GLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVS------------------KLF 253

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E++ V W+A++    +    ++ L+LF++MQ     P+E  ++  L+AC+ LGA+ 
Sbjct: 254 DDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALD 313

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W+H Y +++ L  NV L T++VDMY+KCG++  AL VF GI  +++  + A+I G+A
Sbjct: 314 VGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTRNSLTYTAIIGGLA 373

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++GDA  ++  F+ M+ +G  P E TF+ +L+ C H  M++ G + F  M + + + PQL
Sbjct: 374 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 433

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY+ +VDLL RAG++EEA+K +E         DA VWGALL  CR++G +++G +  +K
Sbjct: 434 KHYSIMVDLLGRAGLLEEADKLMESMP---MEADAAVWGALLFGCRMHGNVKLGEKAAKK 490

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+  +D   +VL   +Y EA    +A + R++++E G++K PGCS IEVNG+V EF+ 
Sbjct: 491 LLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVSEFIV 550

Query: 421 GDNRHAQAGEIYRVIHSF 438
            D    ++ +IY  +H  
Sbjct: 551 RDKSRPESEKIYDCLHCL 568



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 157/334 (47%), Gaps = 49/334 (14%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGF---EPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           IRG+ ++  PK +V  Y  ML  G     P+++T+P L K C  L  L + G  +  HV 
Sbjct: 50  IRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADL-RLNSLGHMILGHVF 108

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K             LE  S VH                       +  +   G+ ENAR+
Sbjct: 109 KLR-----------LELVSHVH--------------------NASIHMFASCGEMENARK 137

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F++ P R+ VSW+ ++  Y +I + ++ + +++ M+  G+KP++  ++ ++++CA LG 
Sbjct: 138 VFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGD 197

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN------------ 226
           + +G   + Y K   L   + LA A++DM+SKCG +H A  +F+ +              
Sbjct: 198 LNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDME 257

Query: 227 -KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
            KD   WNAMI G      ++ +L LF  M  S T P E T +  L+ C+    +  G+ 
Sbjct: 258 EKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIW 317

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           +   +   + +   +     +VD+ A+ G + EA
Sbjct: 318 IHRYIEK-HSLSLNVALGTSLVDMYAKCGNISEA 350



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 100/210 (47%), Gaps = 4/210 (1%)

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM---KPNESGLVSVLTACA 174
           ++ + +   NA SW+  +  +S   + K+ +  ++QM   G    +P+      +   CA
Sbjct: 33  KILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCA 92

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            L   + G  +  +  +  LE    +  A + M++ CG + +A  VF+    +D  +WN 
Sbjct: 93  DLRLNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNC 152

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I+G    G+ +K++E++  M   G +P + T + ++++C     +  G   +E + A  
Sbjct: 153 LINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKA-N 211

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           G+   +     ++D+ ++ G + EA +  +
Sbjct: 212 GLRMTIPLANALMDMFSKCGDIHEARRIFD 241



 Score = 38.5 bits (88), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 74/165 (44%), Gaps = 16/165 (9%)

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG---TQPTET 265
           S+  +++  + + +GI N +A +WN  I G + + + K ++  + +M++ G   ++P   
Sbjct: 23  SESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPKDAVLAYKQMLRRGCCESRPDHF 82

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEK 321
           T+  +   C   +     LN   +M   +  + +LE  + V    + + A  G +E A K
Sbjct: 83  TYPVLFKVCADLR-----LNSLGHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARK 137

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             +E        D   W  L++  +  G+ E    V++ +   G+
Sbjct: 138 VFDES----PVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGV 178


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  291 bits (745), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 256/438 (58%), Gaps = 15/438 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  YM+A   +L+     ++ ++  E N +T   ++      G +++       HV + 
Sbjct: 176 MIAAYMEAGEVELAE----ELFEVMPERNTHTLMEMVGGYSARGDMDS-----AKHVFEM 226

Query: 61  GFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVD-GYGKMGDFENARE 118
             G    V+ ++++  ++    +  AR++FD    RDV TW  M+   Y K G  E+AR+
Sbjct: 227 ANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVEDARK 286

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+ MPERN V W+++++ Y+++  FK+ + LFR MQ  G+K +++ + +V+++C  +GA
Sbjct: 287 VFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGA 346

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G +VH+Y   + L K + +  +++DMYSKCG +  A  +F G+  +D  +W  MI G
Sbjct: 347 LDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMG 406

Query: 239 VAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
            A+NG + ++L+LF +M + G   P E TF+ VLT+C+H  +V  G + F  MS VYG+ 
Sbjct: 407 FAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIA 466

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY C+VDLL RA ++ EAE+FIEE        D  +W +LL ACR  G++ +   V
Sbjct: 467 PRIEHYGCMVDLLGRAKLLAEAEQFIEEMP---IAPDVAIWRSLLFACRARGEVGLAEYV 523

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             ++ E+  +    +VL  N+Y      ++ NKVR  +  + + K+PGCSVIEVNG   E
Sbjct: 524 AERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVNGCAHE 583

Query: 418 FLAGDNRHAQAGEIYRVI 435
           FL+GD  H +   IY ++
Sbjct: 584 FLSGDETHLETEAIYNIL 601



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 10/299 (3%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P  +T   ++KA      L   G  VH HV K GF  D  + ++L++ Y+   ++  
Sbjct: 99  GVRPLTFTVSSVLKAAARREMLRE-GEQVHVHVFKNGFQTDERIATTLVDLYARCGRLDD 157

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR +FD+   +D   + TM+  Y + G+ E A ELFE MPERN  +   ++  YS   D 
Sbjct: 158 ARRVFDRLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDM 217

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-NVILATA 203
                +F     V    N     ++++  A  G++     V    ++  +   NV++   
Sbjct: 218 DSAKHVFEMANGV---VNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGV- 273

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
              MY+KCG V  A  VF+ +  ++   W +MISG    G  K++++LF  M  SG +  
Sbjct: 274 ---MYAKCGLVEDARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKAD 330

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           + T   V+++C     +  G         V+G+   +     ++D+ ++ G +++A + 
Sbjct: 331 DATIATVVSSCGQMGALDLG-RYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEI 388


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  291 bits (744), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 164/507 (32%), Positives = 262/507 (51%), Gaps = 72/507 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR + Q + P  + F + +M   G   +N+T+P L+KAC     L    M +H H+ K 
Sbjct: 88  LIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKM-MHNHIEKL 146

Query: 61  GFGEDPFVVSSLLEFYS------------LVHKMG---------------------TARA 87
           G   D +V ++L++ YS            L  KM                       AR 
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARR 206

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD---- 143
           LFD+ P RD+++W TM+DGY +  +   A ELFEKMPERN VSWS ++  YS+  D    
Sbjct: 207 LFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMA 266

Query: 144 -----------------------------FKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
                                         KE   L  QM   G+K + + ++S+L AC 
Sbjct: 267 RVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACT 326

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
             G ++ G+ +HS  KR +L  N  +  A++DMY+KCG++  A  VF  I  KD  +WN 
Sbjct: 327 ESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNT 386

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M+ G+ ++G  K+++ELF RM + G +P + TF+AVL +C HA ++ +G++ F +M  VY
Sbjct: 387 MLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVY 446

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            + PQ+EHY C+VDLL R G ++EA K ++         +  +WGALL ACR++ ++++ 
Sbjct: 447 DLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMP---MEPNVVIWGALLGACRMHNEVDIA 503

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
             V   L ++   D   + L  NIY  A  W+  A+ +R  +   G++K  G S +E+  
Sbjct: 504 KEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVAD-IRSKMKSMGVEKPSGASSVELED 562

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            + EF   D  H ++ +IY+++ S ++
Sbjct: 563 GIHEFTVFDKSHPKSDQIYQMLGSLIE 589



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 34/272 (12%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F ++ E N    ++++ A+++ S   +   +F +MQ  G+  +      +L AC+ 
Sbjct: 70  AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--HVHSALSVFEGISNKDAGAWN 233
              +     +H++ ++  L  ++ +  A++D YS+CG   V  A+ +FE +S +D  +WN
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           +M+ G+   G+ + +  LFD M     Q    ++  +L      + +     LFE M   
Sbjct: 190 SMLGGLVKAGELRDARRLFDEM----PQRDLISWNTMLDGYARCREMSKAFELFEKMPER 245

Query: 294 -----------YGVEPQLEHYACVVDLL-----------------ARAGMVEEAEKFIEE 325
                      Y     +E    + D +                 A  G+++EA++ +++
Sbjct: 246 NTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQ 305

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
            +      DA    ++L+AC   G + +G R+
Sbjct: 306 MVASGLKFDAAAVISILAACTESGLLSLGMRI 337


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 247/437 (56%), Gaps = 12/437 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           MI G+  +     +V  +LDM   GFEP+  T   ++ A   +G LE+   G+ +H +V+
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPA---VGDLEDLVMGILIHGYVI 277

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D  V S+L++ Y           +FD+    DV +    + G  + G  E++  
Sbjct: 278 KQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLR 337

Query: 119 LFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           LF ++ ++    N VSW++++A  S+     E L LFR+MQ  G+KPN   +  +L AC 
Sbjct: 338 LFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACG 397

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           ++ A+  G   H ++ R  +  +V + +A++DMY+KCG + ++   F+GI  K+   WNA
Sbjct: 398 NIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNA 457

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I+G AM+G AK+++E+FD M +SG +P   +F  VL+ C+ + +  +G   F +MS+ Y
Sbjct: 458 VIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKY 517

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+E ++EHYAC+V LL+RAG +E+A   I          DA VWGALLS+CR++  + +G
Sbjct: 518 GIEARVEHYACMVTLLSRAGKLEQAYAMIRRMP---VNPDACVWGALLSSCRVHNNVSLG 574

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL E+  ++   ++L  NIY   G   E N+VR ++   G++K PGCS IEV   
Sbjct: 575 EVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNK 634

Query: 415 VEEFLAGDNRHAQAGEI 431
           V   LAGD  H Q  +I
Sbjct: 635 VHMLLAGDKSHPQMTQI 651



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 147/294 (50%), Gaps = 6/294 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  ML  G  P+N   P  +KAC  L  L+     VH      GF  D FV SSL+  Y 
Sbjct: 102 FSQMLTRGLMPDNRVLPSAVKACAGLSALKP-ARQVHGIASVSGFDSDSFVQSSLVHMYI 160

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER----NAVSWSA 133
             +++  A  +FD+  + DVV+W+ +V  Y + G  + A+ LF +M +     N +SW+ 
Sbjct: 161 KCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNG 220

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           ++A ++    + E + +F  M   G +P+ + + SVL A   L  +  G+ +H Y  +  
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           L  +  +++A++DMY KC        VF+ + + D G+ NA I G++ NG  + SL LF 
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           ++   G +    ++ +++  C+      + L LF  M  + GV+P      C++
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQ-IAGVKPNSVTIPCLL 393



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 1/198 (0%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y     F +A  + + +PE N  S+S ++ A+S+   F   LS F QM   G+ 
Sbjct: 52  TKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLM 111

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   L S + ACA L A+     VH  A     + +  + +++V MY KC  +  A  V
Sbjct: 112 PDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRV 171

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F+ +   D  +W+A+++  A  G   ++  LF  M  SG QP   ++  ++    H+ + 
Sbjct: 172 FDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLY 231

Query: 281 RDGLNLFENMSAVYGVEP 298
            + + +F +M  + G EP
Sbjct: 232 SEAVLMFLDMH-LRGFEP 248


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  291 bits (744), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 158/400 (39%), Positives = 237/400 (59%), Gaps = 12/400 (3%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           P   AC  LG        VHA  VK G   D FV ++L+ FY +   +G  R +FD+ P 
Sbjct: 156 PSASACSFLGS------HVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPR 209

Query: 95  -RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
            RDV+TW  ++ GY + G    ARE+F++MP R+ +SWS ++  Y +  + +  L +FR 
Sbjct: 210 VRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRN 269

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M E G++PN++ +V+ L+A A LG +  G +VH+  +R  +   + +  A+VDMY+KCG 
Sbjct: 270 MVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGC 329

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           V  A  VF+G+  +D  AWNAMI G+A +G  + ++ELF+R +  G  PT  TFV VL  
Sbjct: 330 VAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNG 389

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C+ + +V +G   F+ +   Y +EP++EHY C+VDLL RAG+V EA + IE   G     
Sbjct: 390 CSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIE---GMHIAP 446

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVR 392
           D  +WG +LS+C+ +G +++G  V  KL E+  T    +VL   IY +A  WD E  +VR
Sbjct: 447 DPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWD-EVREVR 505

Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           KL+S  G  K  G S++E +G V +FL GD  H  + +IY
Sbjct: 506 KLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIY 545



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 36/274 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY++    ++++  + +M++ G  PN       + A   LG LE+ G FVH  V + 
Sbjct: 250 LVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEH-GKFVHNVVQRS 308

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V ++L++ Y+    +  AR +FD    RDV  W  M+ G    G   +A ELF
Sbjct: 309 GMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELF 368

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+                  IS+              G+ P     V VL  C+  G + 
Sbjct: 369 ERF-----------------ISE--------------GLSPTNVTFVGVLNGCSRSGLVA 397

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +     ++Y +E  +     +VD+  + G V  A+ + EG+    D   W  ++S 
Sbjct: 398 EGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSS 457

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
              +G     + + +++++    PT + +  +L+
Sbjct: 458 CKTHGLVDLGVSVGNKLIE--LDPTHSGYYVLLS 489


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  291 bits (744), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 152/419 (36%), Positives = 241/419 (57%), Gaps = 35/419 (8%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML++G   +  T   ++ AC  +G     G +V  HV + G   +P +V++L+       
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGD-AKLGKWVAGHVDEEGLARNPKLVTALM------- 263

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                   D Y K G+   AR LF+ M  R+ V+WSA+++ Y++
Sbjct: 264 ------------------------DMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQ 299

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               +E L LF +MQ   ++PN+  +VSVL+ACA LGA+  G WVHSY +R  L    IL
Sbjct: 300 ADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTIL 359

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA+VD Y+KCG +  A+  FE +  K++  W A+I G+A NG  +++LELF  M ++G 
Sbjct: 360 GTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGI 419

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +PT+ TF+ VL  C+H+ +V +G   F++M+  YG++P++EHY C+VDLL RAG+V+EA 
Sbjct: 420 EPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAY 479

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           +FI          +A +W ALLS+C ++  + +G    +++  +  +    +VL  NIY 
Sbjct: 480 QFIRTMP---IEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYA 536

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
            AG   +A  VRK + + G++K PGCS+IE++GVV EF A D+ H +  EIY+ +   +
Sbjct: 537 SAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMI 595



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 177/379 (46%), Gaps = 61/379 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           ++R ++ A  P+ ++  +++ML        + +T    +K+C  +  L + G  V A+ V
Sbjct: 89  LMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCAL-DVGRGVQAYAV 147

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D FV+SSL+  Y+                                 GD   AR 
Sbjct: 148 KRGLVADRFVLSSLIHMYA-------------------------------SCGDVAAARL 176

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+   E   V W+AI+AAY +  D+ EV+ +F+ M EVG+  +E  LVSV+TAC  +G 
Sbjct: 177 VFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGD 236

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
              G WV  +     L +N  L TA++DMY+KCG +  A  +F+G+ ++D  AW+AMISG
Sbjct: 237 AKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISG 296

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLF 287
                  +++L LF  M  +  +P + T V+VL+ C            H+ + R  L+L 
Sbjct: 297 YTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSL- 355

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
              + + G          +VD  A+ G +++A +  E     +   ++  W AL+     
Sbjct: 356 ---TTILGTA--------LVDFYAKCGCIDDAVEAFE----SMPVKNSWTWTALIKGMAT 400

Query: 348 YGKIEVGNRVWRKLAEMGI 366
            G+      ++  + E GI
Sbjct: 401 NGRGREALELFSSMREAGI 419



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 102/222 (45%), Gaps = 7/222 (3%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG--MKPNESGLVSVLTACAHLGAITQ 181
           P  +   ++ +M A+      ++ L LF +M         ++      L +C+ + A+  
Sbjct: 79  PPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDV 138

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  V +YA +  L  +  + ++++ MY+ CG V +A  VF+         WNA+++    
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLK 198

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           NGD  + +E+F  M++ G    E T V+V+T C      + G  +  ++    G+    +
Sbjct: 199 NGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDE-EGLARNPK 257

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
               ++D+ A+ G + +A +  +    G+   D   W A++S
Sbjct: 258 LVTALMDMYAKCGEIGKARRLFD----GMQSRDVVAWSAMIS 295


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 253/438 (57%), Gaps = 11/438 (2%)

Query: 1   MIRGYMQANFPKLS----VFCYLD-MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           MI GY Q+ +        VF  L+ M   G  PN  TF  ++KAC + G LE  G  +HA
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQ-GRQIHA 410

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            + K GF  D  + +++   Y+    +  A  +F K  +++VV W +++  Y K GD  +
Sbjct: 411 EISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTS 470

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ++F +M  RN VSW+ ++A Y++  D  +V  L   M+  G +P+   ++S+L AC  
Sbjct: 471 AEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGA 530

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L A+ +G  VH+ A +  LE + ++AT+++ MYSKCG V  A +VF+ ISN+D  AWNAM
Sbjct: 531 LSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAM 590

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ++G   +G   ++++LF RM+K    P E TF AV++ C  A +V++G  +F  M   + 
Sbjct: 591 LAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFR 650

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++P  +HY C+VDLL RAG ++EAE+FI+         D +VW ALL AC+ +  +++  
Sbjct: 651 MKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMP---CEPDISVWHALLGACKSHDNVQLAE 707

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                +  +  ++ S +V   NIY +AG WD ++ KVRK++ + G+KK  G S IE++G 
Sbjct: 708 WAAHHILRLEPSNASVYVTLSNIYAQAGRWD-DSTKVRKVMDDKGLKKDRGESSIEIDGR 766

Query: 415 VEEFLAGDNRHAQAGEIY 432
           +  F+A D  H +   I+
Sbjct: 767 IHTFVAEDCAHPEIDSIH 784



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 206/442 (46%), Gaps = 61/442 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y   N P  +   +  M D   EPN  TF  ++KAC       N+ M   A     
Sbjct: 150 MIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKAC------NNYSMLEKAR---- 199

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                        E +++V   G          + DV   T ++  Y K G+   A E+F
Sbjct: 200 -------------EIHTVVKASGM---------ETDVAVATALITMYSKCGEISLACEIF 237

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KM ERN VSW+AI+ A ++     E   L+ +M + G+ PN    VS+L +C    A+ 
Sbjct: 238 QKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALN 297

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +HS+     LE +V++A A++ MY KC  +  A   F+ +S +D  +W+AMI+G A
Sbjct: 298 RGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYA 357

Query: 241 MNG-DAKKSL----ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
            +G   K+SL    +L +RM + G  P + TF+++L  C+    +  G  +   +S V G
Sbjct: 358 QSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV-G 416

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            E        + ++ A+ G + EAE+   +    +   +   W +LL+     G +    
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSK----MENKNVVAWASLLTMYIKCGDLTSAE 472

Query: 356 RVWRKLAEMGITDFSTHVLSYNI----YKEAGWDMEANKVRKLISETGMKK-KPG----C 406
           +V+ +++       + +V+S+N+    Y ++G   +  KV +L+S   ++  +P      
Sbjct: 473 KVFSEMS-------TRNVVSWNLMIAGYAQSG---DIAKVFELLSSMKVEGFQPDRVTII 522

Query: 407 SVIEVNGVVEEFLAGDNRHAQA 428
           S++E  G +     G   HA+A
Sbjct: 523 SILEACGALSALERGKLVHAEA 544



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/408 (22%), Positives = 181/408 (44%), Gaps = 78/408 (19%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G   N+ T+  +I+ C  L   E+ G  VH  + + G   D ++ +SL+ FYS       
Sbjct: 73  GLLVNSNTYGCIIEHCAKLRRFED-GKMVHKQLDELGLAIDIYLGNSLINFYS------- 124

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                                   K GD  +  ++F +M  R+ V+WS+++AAY+  +  
Sbjct: 125 ------------------------KFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHP 160

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            +    F +M++  ++PN    +S+L AC +   + +   +H+  K   +E +V +ATA+
Sbjct: 161 AKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATAL 220

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           + MYSKCG +  A  +F+ +  ++  +W A+I   A +    ++ EL+++M+++G  P  
Sbjct: 221 ITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNA 280

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFV++L +C   + +  G  +  ++S   G+E  +     ++ +  +   +++A     
Sbjct: 281 VTFVSLLNSCNTPEALNRGRRIHSHISE-RGLETDVVVANALITMYCKCNCIQDA----R 335

Query: 325 EKMGGLGGGDANVWGAL----------------------------------------LSA 344
           E    +   D   W A+                                        L A
Sbjct: 336 ETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKA 395

Query: 345 CRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV 391
           C ++G +E G ++  +++++G  +D S     +N+Y + G   EA +V
Sbjct: 396 CSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQV 443



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 106/226 (46%), Gaps = 9/226 (3%)

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            KE + L   +++ G+  N +    ++  CA L     G  VH       L  ++ L  +
Sbjct: 59  LKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNS 118

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +++ YSK G V S   VF  ++ +D   W++MI+  A N    K+ + F+RM  +  +P 
Sbjct: 119 LINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPN 178

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TF+++L  C +  M+     +   + A  G+E  +     ++ + ++ G +  A + I
Sbjct: 179 RITFLSILKACNNYSMLEKAREIHTVVKA-SGMETDVAVATALITMYSKCGEISLACE-I 236

Query: 324 EEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
            +KM      + NV  W A++ A   + K+     ++ K+ + GI+
Sbjct: 237 FQKM-----KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGIS 277


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 158/400 (39%), Positives = 237/400 (59%), Gaps = 12/400 (3%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           P   AC  LG        VHA  VK G   D FV ++L+ FY +   +G  R +FD+ P 
Sbjct: 156 PSASACSFLGS------HVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPR 209

Query: 95  -RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
            RDV+TW  ++ GY + G    ARE+F++MP R+ +SWS ++  Y +  + +  L +FR 
Sbjct: 210 VRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRN 269

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M E G++PN++ +V+ L+A A LG +  G +VH+  +R  +   + +  A+VDMY+KCG 
Sbjct: 270 MVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGC 329

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           V  A  VF+G+  +D  AWNAMI G+A +G  + ++ELF+R +  G  PT  TFV VL  
Sbjct: 330 VAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNG 389

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C+ + +V +G   F+ +   Y +EP++EHY C+VDLL RAG+V EA + IE   G     
Sbjct: 390 CSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIE---GMHIAP 446

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVR 392
           D  +WG +LS+C+ +G +++G  V  KL E+  T    +VL   IY +A  WD E  +VR
Sbjct: 447 DPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWD-EVREVR 505

Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           KL+S  G  K  G S++E +G V +FL GD  H  + +IY
Sbjct: 506 KLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIY 545



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 36/274 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY++    ++++  + +M++ G  PN       + A   LG LE+ G FVH  V + 
Sbjct: 250 LVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEH-GKFVHNVVQRS 308

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V ++L++ Y+    +  AR +FD    RDV  W  M+ G    G   +A ELF
Sbjct: 309 GMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELF 368

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+                  IS+              G+ P     V VL  C+  G + 
Sbjct: 369 ERF-----------------ISE--------------GLSPTNVTFVGVLNGCSRSGLVA 397

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +     ++Y +E  +     +VD+  + G V  A+ + EG+    D   W  ++S 
Sbjct: 398 EGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSS 457

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
              +G     + + +++++    PT + +  +L+
Sbjct: 458 CKTHGLVDLGVSVGNKLIE--LDPTHSGYYVLLS 489


>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
 gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
          Length = 664

 Score =  290 bits (743), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 158/400 (39%), Positives = 237/400 (59%), Gaps = 12/400 (3%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           P   AC  LG        VHA  VK G   D FV ++L+ FY +   +G  R +FD+ P 
Sbjct: 156 PSASACSFLGS------HVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPR 209

Query: 95  -RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
            RDV+TW  ++ GY + G    ARE+F++MP R+ +SWS ++  Y +  + +  L +FR 
Sbjct: 210 VRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRN 269

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M E G++PN++ +V+ L+A A LG +  G +VH+  +R  +   + +  A+VDMY+KCG 
Sbjct: 270 MVEQGVRPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGC 329

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           V  A  VF+G+  +D  AWNAMI G+A +G  + ++ELF+R +  G  PT  TFV VL  
Sbjct: 330 VAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNG 389

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C+ + +V +G   F+ +   Y +EP++EHY C+VDLL RAG+V EA + IE   G     
Sbjct: 390 CSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIE---GMHIAP 446

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVR 392
           D  +WG +LS+C+ +G +++G  V  KL E+  T    +VL   IY +A  WD E  +VR
Sbjct: 447 DPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWD-EVREVR 505

Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           KL+S  G  K  G S++E +G V +FL GD  H  + +IY
Sbjct: 506 KLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIY 545



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 117/274 (42%), Gaps = 36/274 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY++    ++++  + +M++ G  PN       + A   LG LE+ G FVH  V + 
Sbjct: 250 LVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGLLEH-GKFVHNVVQRS 308

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V ++L++ Y+    +  AR +FD    RDV  W  M+ G    G   +A ELF
Sbjct: 309 GMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELF 368

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+                  IS+              G+ P     V VL  C+  G + 
Sbjct: 369 ERF-----------------ISE--------------GLSPTNVTFVGVLNGCSRSGLVA 397

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +     ++Y +E  +     +VD+  + G V  A+ + EG+    D   W  ++S 
Sbjct: 398 EGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSS 457

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
              +G     + + +++++    PT + +  +L+
Sbjct: 458 CKTHGLVDLGVSVGNKLIE--LDPTHSGYYVLLS 489


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 158/437 (36%), Positives = 242/437 (55%), Gaps = 41/437 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++ +     ++  Y  ML     P+NY    ++KAC     L   G  VH+  +K 
Sbjct: 101 LIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALRE-GREVHSRALKL 159

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  V   ++E Y                               GK G+  +AR +F
Sbjct: 160 GLSSNRLVRLRIMELY-------------------------------GKCGELGDARRVF 188

Query: 121 EKMPE----RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           E+MPE    ++ V W+A++  + R  +    L  FR MQ   ++PNE  +V VL+AC+ L
Sbjct: 189 EEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQL 248

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G WVHSY +++ +E N+ +  A+++MYS+CG +  A +VF+ + ++D   +N MI
Sbjct: 249 GALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMI 308

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           SG++MNG +++++ELF  M+    +PT  TFV VL  C+H  +V  G  +F +M+  YGV
Sbjct: 309 SGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGV 368

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           EPQ+EHY C+VDLL R G +EEA   I   KM      D  + G LLSAC+++  +E+G 
Sbjct: 369 EPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKM----TPDHIMLGTLLSACKMHKNLELGE 424

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           +V + L + G  D  T+VL  ++Y  +G   EA +VR  + E GM+K+PGCS IEVN  +
Sbjct: 425 QVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEI 484

Query: 416 EEFLAGDNRHAQAGEIY 432
            EFL GD RH +   IY
Sbjct: 485 HEFLLGDLRHPRKERIY 501



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 139/311 (44%), Gaps = 40/311 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +++ G  +DPF+V  LL   S  H +  A  +F  + + +V  +T ++DG+   G+
Sbjct: 51  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 110

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           + +A +L+ +M   + +  + +MA                               S+L A
Sbjct: 111 YFDAIQLYSRMLHDSILPDNYLMA-------------------------------SILKA 139

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN----KD 228
           C    A+ +G  VHS A +  L  N ++   ++++Y KCG +  A  VFE +      KD
Sbjct: 140 CGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKD 199

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
              W AMI G   N +  ++LE F  M     +P E T V VL+ C+    +  G  +  
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHS 259

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M   + +E  L     ++++ +R G ++EA+   +E    +   D   +  ++S   + 
Sbjct: 260 YMRK-FEIELNLFVGNALINMYSRCGSIDEAQTVFDE----MKDRDVITYNTMISGLSMN 314

Query: 349 GKIEVGNRVWR 359
           GK      ++R
Sbjct: 315 GKSRQAIELFR 325



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/181 (19%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           ++  ++S+L    H   I Q L +H+   R    ++  +   ++   SKC  +  A  +F
Sbjct: 31  DQKQIISLLQRSKH---INQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIF 87

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           +   N +   + A+I G   +G+   +++L+ RM+     P      ++L  C     +R
Sbjct: 88  QYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALR 147

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
           +G  +  + +   G+         +++L  + G + +A +  EE    +   D   W A+
Sbjct: 148 EGREV-HSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAM 206

Query: 342 L 342
           +
Sbjct: 207 I 207


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 170/488 (34%), Positives = 251/488 (51%), Gaps = 69/488 (14%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  M   G  P+N+T+P L+KAC     L    M +HAHV K GF  D FV +SL++ YS
Sbjct: 108 FFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRM-IHAHVEKIGFYGDIFVPNSLIDSYS 166

Query: 78  LVHKMGT---------------------------------ARALFDKSPDRDVVTWTTMV 104
                G                                  A  LFD+ PDRD+V+W TM+
Sbjct: 167 RCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTML 226

Query: 105 DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF-------------------- 144
           DGY K G+ + A ELFE+MP RN VSWS ++  YS+  D                     
Sbjct: 227 DGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTT 286

Query: 145 -----------KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
                      +E   L+ +M+E GM+P++  L+S+L ACA  G +  G  +H+  +R+ 
Sbjct: 287 IIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWR 346

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAMISGVAMNGDAKKSLELF 252
                 +  A +DMY+KCG + +A  VF G ++ KD  +WN+MI G AM+G  +K+LELF
Sbjct: 347 FRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELF 406

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
             MV+ G +P   TFV +L  CTHA +V +G   F +M  VYG+ PQ+EHY C++DLL R
Sbjct: 407 SWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGR 466

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
            G ++EA   +          +A + G LL+ACR++  +++   V  +L ++  +D   +
Sbjct: 467 GGHLKEAFMLLRSMP---MEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNY 523

Query: 373 VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
            L  NIY +AG  M    VR  +  TG +K  G S IEV   V EF   D  H ++ +IY
Sbjct: 524 SLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIY 583

Query: 433 RVIHSFLK 440
           ++I   ++
Sbjct: 584 QMIDRLVQ 591



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 44/248 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +    + +   Y  M + G  P++     ++ AC   G L   G  +HA + ++
Sbjct: 287 IIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAESGML-GLGKRIHASMRRW 345

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD----KSPDRDVVTWTTMVDGYGKMGDFENA 116
            F     V+++ ++ Y+   K G   A FD        +DVV+W +M+ G+   G  E A
Sbjct: 346 RFRCGAKVLNAFIDMYA---KCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKA 402

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            ELF         SW                      M + G +P+    V +L AC H 
Sbjct: 403 LELF---------SW----------------------MVQEGFEPDTYTFVGLLCACTHA 431

Query: 177 GAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           G + +G  + +S  K Y +   V     ++D+  + GH+  A  +   +  +     NA+
Sbjct: 432 GLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEP----NAI 487

Query: 236 ISGVAMNG 243
           I G  +N 
Sbjct: 488 ILGTLLNA 495



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/237 (19%), Positives = 96/237 (40%), Gaps = 65/237 (27%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA V+K    +D FV   L+  +SL   + +A  +F+                      
Sbjct: 40  IHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNH--------------------- 78

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEV-LSLFRQMQEVGMKPNESGLVSVLT 171
                     +P  N   +++I+ A++  S  + +  + F QMQ+ G+ P+      +L 
Sbjct: 79  ----------VPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLK 128

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH------------------ 213
           AC+   ++     +H++ ++     ++ +  +++D YS+CG+                  
Sbjct: 129 ACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDV 188

Query: 214 ---------------VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
                          +  A  +F+ + ++D  +WN M+ G A  G+   + ELF+RM
Sbjct: 189 VTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERM 245


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 257/437 (58%), Gaps = 7/437 (1%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           +++ N    ++  +++M   G +P+  T   L   C  LG +   G   H  +VK G G 
Sbjct: 93  FVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV-VGAQGHGCMVKMGLGG 151

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
                +++++ Y+    MG AR +F +   + VV+WT ++DG  +     N R +F++MP
Sbjct: 152 VEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMP 211

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGL 183
           ERN V+W+ ++A Y      +E  +L R+M  ++ M+ N   L S+LTAC+  G +  G 
Sbjct: 212 ERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGR 271

Query: 184 WVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
           WVH+YA K    E N+++ TA+VDMY+KCG +H A   F+ +  ++  +WNAM+SG+AM+
Sbjct: 272 WVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMH 331

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G  + +L++F +M K   +P + TF +VL+ C+H+ +V  G   F N+ +VYG+ P++EH
Sbjct: 332 GLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEH 390

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           YAC+VDLL RAG +EEAE  + E        +  V G+LL +C I+GK+++G  + ++L 
Sbjct: 391 YACMVDLLGRAGRLEEAEILVREMPIR---PNEVVLGSLLGSCSIHGKLQLGEHLLQELV 447

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           ++   +   H+L  N+Y  AG    AN +R+++ + G+KK PG S I V G V +F AGD
Sbjct: 448 QLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGD 507

Query: 423 NRHAQAGEIYRVIHSFL 439
             H +  E+Y ++   +
Sbjct: 508 KSHPRTREVYNMLDEMI 524



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 140/355 (39%), Gaps = 70/355 (19%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP--FVVSSLLEFYSLVHKMGTAR 86
            +Y F  L+++C     L + G  +HA ++  G    P  F+ ++LL+FY+       AR
Sbjct: 14  RHYRF--LLRSCARESSL-DIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQAR 70

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD+ P                                ++ V W+ +M  + R +   E
Sbjct: 71  KVFDEIPH-----------------------------SHKDTVDWTTLMGCFVRHNVSDE 101

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            L +F +M+  G+KP+E  LV +   CA LG +  G   H    +  L        AV+D
Sbjct: 102 ALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMD 161

Query: 207 MYSKCGHVHSALSVF---------------------EGISN----------KDAGAWNAM 235
           MY+K G +  A  VF                     EG+ N          ++  AW  M
Sbjct: 162 MYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEMPERNEVAWTIM 221

Query: 236 ISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           I+G   +G  ++S  L   M+     +    T  ++LT C+ +  +  G  +        
Sbjct: 222 IAGYLDSGLTQESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTK 281

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
             E  +     +VD+ A+ G +  A KF ++    +   +   W A+LS   ++G
Sbjct: 282 EKELNIMVGTAMVDMYAKCGRIHIAFKFFKK----MPQRNVVSWNAMLSGLAMHG 332


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  290 bits (742), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 152/343 (44%), Positives = 209/343 (60%), Gaps = 5/343 (1%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DV   + +VD Y K G  ++A ++F +MP RN VSW A++A Y + + +KE L +F++M 
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G++PN+S + S LTACA LG++ QG W+H Y  R  L  N  L TA+VDMYSKCG V 
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            AL VFE +  KD   W AMI+G+AM GDA  SL LF +M++S  QP   TF+ VL+ C 
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           H  +V +GL LF  M   Y +EP ++HY C+VDLL RAG +EEA KFIE        G  
Sbjct: 419 HGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG-- 476

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKL 394
            VWGAL S C I+   E+G  +   L ++       ++L  N+Y     W+  AN VR+L
Sbjct: 477 -VWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAAN-VRRL 534

Query: 395 ISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +   G+ K P CS IEVNGV+ EF+A D  H ++  +Y ++ S
Sbjct: 535 MKGKGVDKSPACSWIEVNGVIHEFIAFDKSHIESINVYMMLGS 577



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 168/352 (47%), Gaps = 43/352 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF-VHAHVVK 59
           ++R +  ++ P++ +  Y  + + G  P+ +TFP L+KA      L N   F  +AH+VK
Sbjct: 75  IVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA---FSKLRNENPFQFYAHIVK 131

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FG   D FV +SL                               V  +   G  + +R L
Sbjct: 132 FGLDFDAFVQNSL-------------------------------VSAFAHCGYVDCSRRL 160

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +  +++ VSW+A++    R     E L  F +M+  G++ +E  +VSVL A A L  +
Sbjct: 161 FIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDV 220

Query: 180 TQGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             G WVH  Y +   +  +V + +A+VDMYSKCG+   A+ VF  +  ++  +W A+I+G
Sbjct: 221 WFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAG 280

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS-AVYGVE 297
                  K++L++F  M+  G +P ++T  + LT C     +  G  L E +  +  G+ 
Sbjct: 281 YVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLN 340

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            +L     +VD+ ++ G V+EA    E+    L   D   W A+++   + G
Sbjct: 341 SKLG--TALVDMYSKCGCVDEALLVFEK----LPAKDVYPWTAMINGLAMRG 386



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 115/253 (45%), Gaps = 38/253 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q N  K ++  + +M+  G EPN  T    + AC  LG L+  G ++H +V + 
Sbjct: 277 LIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQ-GRWLHEYVDRS 335

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G +  + ++L++ YS    +  A  +F+K P +DV  WT M++G    GD  ++    
Sbjct: 336 KLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSS---- 391

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L+LF QM    ++PN    + VL+ACAH G + 
Sbjct: 392 ---------------------------LNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVD 424

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +GL +       Y LE NV     +VD+  + G +  A+   E +      G W A+ SG
Sbjct: 425 EGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484

Query: 239 VAMNGDAKKSLEL 251
             ++    K+ EL
Sbjct: 485 CMIH----KAFEL 493



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 124/265 (46%), Gaps = 21/265 (7%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+++       W+ I+ ++S  S  + VL  + +++  G+ P+      +L A + L  
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
                  +++  ++ L+ +  +  ++V  ++ CG+V  +  +F   + KD  +W A+I+G
Sbjct: 120 -ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD--------GLNLFENM 290
              NG A ++LE F  M  SG +  E T V+VL     A M+RD        G  + E+ 
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCA---AAMLRDVWFGRWVHGFYV-ESG 234

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
             ++ V       + +VD+ ++ G  ++A K   E    +   +   WGAL++      +
Sbjct: 235 RVIWDVYVG----SALVDMYSKCGYCDDAVKVFNE----MPTRNLVSWGALIAGYVQCNR 286

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLS 375
            +   +V++++   GI    + V S
Sbjct: 287 YKEALKVFQEMIIEGIEPNQSTVTS 311


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 152/423 (35%), Positives = 254/423 (60%), Gaps = 10/423 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLEN---FGMFVHAHVVKFGFG-EDPFVVSSLL 73
           ++ ML+   EPN+ T   L+ AC    P +    FG  +H H  K GF   D  V ++L+
Sbjct: 75  FIQMLEAEVEPNHITLITLLSACA-HSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALI 133

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           + Y+   K+  AR +FD+   R++V+W TM+DGY K GD ++A +LF+K+P +N VSW+ 
Sbjct: 134 DMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTV 193

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           ++  + +   ++E L  FR+MQ  G+ P+   ++++++ACA+LGA+  GLWVH    +  
Sbjct: 194 VIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKE 253

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
              NV +  +++DMY++CG +  A  VF+G+S ++  +WN++I G A+NG A K+L  F 
Sbjct: 254 FRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFR 313

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M K G +P   ++ + LT C+HA ++ +GL +F ++   +   P++EHY C+VDL +RA
Sbjct: 314 SMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRA 373

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G ++EA   I +KM  +   +  V G+LL+ACR  G +E+  +V +   E+     S +V
Sbjct: 374 GRLKEAWDVI-KKMPMM--PNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPGGDSNYV 430

Query: 374 LSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           L  NIY   G WD  A+KVR+ + E G++K    S IE++  + +F++GD  H +   IY
Sbjct: 431 LFSNIYAAVGKWD-GASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSGDKYHEENDYIY 489

Query: 433 RVI 435
             +
Sbjct: 490 SAL 492



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 132/280 (47%), Gaps = 43/280 (15%)

Query: 124 PERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH---LGAI 179
           P  N  VSW++ ++ + + ++F +  S F QM E  ++PN   L+++L+ACAH     +I
Sbjct: 47  PNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSI 106

Query: 180 TQGLWVHSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           T G  +H++A ++    N V++ TA++DMY+KCG +  A  VF+ +  ++  +WN MI G
Sbjct: 107 TFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDG 166

Query: 239 VAMNGDAKKSLELFDR-------------------------------MVKSGTQPTETTF 267
              NGD   +L+LFD+                               M  +G  P   T 
Sbjct: 167 YMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTV 226

Query: 268 VAVLTTCTHAKMVRDGLNLF-ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           +A+++ C  A +   GL L+   +         ++    ++D+ AR G +E A +  +  
Sbjct: 227 IAIISAC--ANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFD-- 282

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             G+   +   W +++    + G  +     +R + + G+
Sbjct: 283 --GMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGL 320


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/445 (34%), Positives = 262/445 (58%), Gaps = 10/445 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y        ++  Y  M      P ++TF  L  AC  +      G  +HA  +  
Sbjct: 80  LIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRH-SALGAQLHAQTLLL 138

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G F  D +V +++++ Y     +  AR +FD+ P+RDV++WT ++  Y ++GD   AR+L
Sbjct: 139 GGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDL 198

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ +P ++ V+W+A++  Y++ +   + L +FR++++ G++ +E  LV V++ACA LGA 
Sbjct: 199 FDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGAS 258

Query: 180 TQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
               W+   A+   + +  NV++ +A++DMYSKCG+V  A  VF+G+  ++  ++++MI 
Sbjct: 259 KYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIV 318

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G A++G A+ +++LF  M+++G +P   TFV VLT C+HA +V  G  LF +M   YGV 
Sbjct: 319 GFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVA 378

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P  E YAC+ DLL+RAG +E+A + +E         D  VWGALL A  ++G  +V    
Sbjct: 379 PTAELYACMTDLLSRAGYLEKALQLVETMP---MESDGAVWGALLGASHVHGNPDVAEIA 435

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEV-NGVV 415
            ++L E+   +   ++L  N Y  AG WD + +KVRKL+ E  +KK PG S +E  NG++
Sbjct: 436 SKRLFELEPDNIGNYLLLSNTYASAGRWD-DVSKVRKLLREKNLKKNPGWSWVEAKNGMI 494

Query: 416 EEFLAGDNRHAQAGEIYRVIHSFLK 440
            +F+AGD  H +  EI + ++  L+
Sbjct: 495 HKFVAGDVSHPKINEIKKELNDLLE 519



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 129/288 (44%), Gaps = 47/288 (16%)

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH- 175
           R LF ++   N  +W+A++ AY+      + LS +  M++  + P      ++ +ACA  
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 176 ---------------LGAITQGLWVHS-----YAKRYHL-----------EKNVILATAV 204
                          LG  +  L+V++     Y K   L           E++VI  T +
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +  Y++ G + +A  +F+G+  KD   W AM++G A N     +LE+F R+   G +  E
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 265 TTFVAVLTTCT------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
            T V V++ C       +A  +RD        S+ +GV   +   + ++D+ ++ G VEE
Sbjct: 243 VTLVGVISACAQLGASKYANWIRDIAE-----SSGFGVGDNVLVGSALIDMYSKCGNVEE 297

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           A    +    G+   +   + +++    I+G+     +++  + E G+
Sbjct: 298 AYDVFK----GMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGV 341


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/345 (40%), Positives = 214/345 (62%), Gaps = 3/345 (0%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +VD Y K G+ + AR LF++M  R+ V+WSA+++ Y++    +E L++F +MQ   + 
Sbjct: 311 TALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVN 370

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           PN+  +VSVL+ACA LGA+  G WVHSY +R  L   VIL TA+VD Y+KCG +  A+  
Sbjct: 371 PNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKA 430

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           FE +  ++   W A+I G+A NG ++++LELF  M+++  +PT+ TF+ VL  C+H  +V
Sbjct: 431 FESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLV 490

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
            +G   F +M+  YG+ P++EHY C+VDLL RAG+++EA +FI          +A VW A
Sbjct: 491 EEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMP---IEPNAVVWRA 547

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
           LLSAC ++  +E+G    +++  +       ++L  N Y   G    A  VRK + E G+
Sbjct: 548 LLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGV 607

Query: 401 KKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
           +K PGCS+IE+ G + EF A D+ H Q  EIY  +H  ++   +V
Sbjct: 608 EKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMV 652



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 164/336 (48%), Gaps = 56/336 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR +++A  P+ ++  +++MLD     P+ +T    +K+C  +  L + G  V A+  K
Sbjct: 141 LIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDL-SVGRGVQAYAFK 199

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  D FV++SL+  Y+                                 GD   A  L
Sbjct: 200 RGFMVDQFVLNSLIHMYA-------------------------------SCGDVVAAHVL 228

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  +  +  ++W+A++A Y +  D+KEV+ +F+ M EV    +E  L+SV TAC  LG  
Sbjct: 229 FHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDA 288

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+  YA+   + ++  LATA+VDMY+KCG +  A  +F+ + ++D  AW+AMISG 
Sbjct: 289 NLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGY 348

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNLFE 288
             +   +++L +F+ M  +   P + T V+VL+ C            H+ + R  L L  
Sbjct: 349 TQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPL-- 406

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             + + G          +VD  A+ G +++A K  E
Sbjct: 407 --TVILGT--------ALVDFYAKCGCIKDAVKAFE 432



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 34/258 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q++  + ++  + +M      PN+ T   ++ AC +LG LE  G +VH+++ + 
Sbjct: 344 MISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALET-GKWVHSYIRR- 401

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                         K     V+  T +VD Y K G  ++A + F
Sbjct: 402 ------------------------------KDLPLTVILGTALVDFYAKCGCIKDAVKAF 431

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E MP RN  +W+A++   +     +E L LF  M E  ++P +   + VL AC+H   + 
Sbjct: 432 ESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVE 491

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G     S  + Y +   +     +VD+  + G +  A      +    +A  W A++S 
Sbjct: 492 EGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551

Query: 239 VAMNGDAKKSLELFDRMV 256
             ++ + +   E   ++V
Sbjct: 552 CTVHKNVEIGEEALKQIV 569



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQG 182
           P R+A S++ ++ ++ R    ++ L LF +M  +  + P++  + + + +C+ +  ++ G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             V +YA +     +  +  +++ MY+ CG V +A  +F  +  K   AWNAMI+G   N
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           GD K+ +E+F  M++      E T ++V T C        G  + E  +   G+      
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAE-YAEEKGMLRSRNL 309

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
              +VD+ A+ G +++A +  +     +   D   W A++S
Sbjct: 310 ATALVDMYAKCGELDKARRLFDR----MHSRDVVAWSAMIS 346


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/465 (33%), Positives = 252/465 (54%), Gaps = 39/465 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  A   + ++  Y+ ML +G  PN+YTFP ++  C  +      G+ VH  VVK 
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCE-GIQVHGSVVKM 160

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG------------ 108
           G  ED F+ + L+ FY+    M     +F+   +R+VV+WT+++ GY             
Sbjct: 161 GLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLF 220

Query: 109 -----------------KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
                            K G  + A+ LF++  +RN V ++ I++ Y+R    +E L++ 
Sbjct: 221 FEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAIL 280

Query: 152 RQMQEVGMKPNESGLVSVLTACAHL-----GAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            +M + G +P+   ++S ++A A L     G +  G WVH+Y ++  +  ++ L TA+VD
Sbjct: 281 DEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVD 340

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           M+++CG   SA+ VF  ++ +D  AW A I  +AM G+ + +  LF++M+  G +P    
Sbjct: 341 MFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVL 400

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           FV VLT C+H   V  GL++F  M   +G+ PQ+EHY C+VDLL RAG++ EA   I  K
Sbjct: 401 FVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLGRAGLLREAFDLI--K 457

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386
              +   D  VWG+LL+ACR++  +E+      ++ E+       HVL  NIY  AG   
Sbjct: 458 SMPMEPNDV-VWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWT 516

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           +  +VR  + E G++K PG S ++VNGV+ EF +GD  H +   I
Sbjct: 517 DVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHI 561



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 109/242 (45%), Gaps = 19/242 (7%)

Query: 94  DRDVVTWTTMVDGYGKMGDFEN---ARELFEKMPER-----NAVSWSAIMAAYSRISDFK 145
           D+   T T +V+   ++   E+   AR+ FE   E           ++++  YS     +
Sbjct: 54  DQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGR 113

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E + L+ +M  +G+ PN      VL+ C  + A  +G+ VH    +  LE++V +   ++
Sbjct: 114 EAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLI 173

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
             Y++CGH+     VFEG+S ++  +W ++I G A     K+++ LF  M+    +    
Sbjct: 174 HFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEML---NKVMVN 230

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
             V +   C      +    LF+       V+  L  Y  ++   AR G+  EA   ++E
Sbjct: 231 ALVDMYMKCGAIDAAK---RLFDEC-----VDRNLVLYNTILSNYARQGLAREALAILDE 282

Query: 326 KM 327
            +
Sbjct: 283 ML 284


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/445 (35%), Positives = 250/445 (56%), Gaps = 35/445 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY + + P  +   +  +L  G  P++YTFP L+KAC     LE  G  +H   +K 
Sbjct: 92  MARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEE-GRQLHCLAIKL 150

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  E+ +V  +L+  Y+  ++M                               + AR +F
Sbjct: 151 GLSENVYVCPTLINMYTACNEM-------------------------------DCARRVF 179

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +K+ E   V+++A++  Y+R S   E LSLFR++Q   +KP +  ++SVL++CA LGA+ 
Sbjct: 180 DKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALD 239

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H Y K+    + V + TA++DMY+KCG +  A+ VFE ++ +D  AW+AMI   A
Sbjct: 240 LGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYA 299

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G   K++ LF  M K+GT+P E TF+ +L  C+H  +V +G   F  M   YGV P +
Sbjct: 300 IHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGI 359

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL RAG +EEA +FI   +G        +W  LLSAC  +G +E+G RV  +
Sbjct: 360 KHYGCMVDLLGRAGRLEEAYEFI---VGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQ 416

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+  +    +++  N+   AG   + N VRKL++E G+ K PGCS +EVN VV EF +
Sbjct: 417 IFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFS 476

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
           GD  H+ + ++++ +   +K   LV
Sbjct: 477 GDGVHSVSTKLHQALDELVKELKLV 501



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 116/247 (46%), Gaps = 27/247 (10%)

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           ++A  LF+++P+ + V ++ +   Y+R        +LF Q+   G+ P++    S+L AC
Sbjct: 72  QHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKAC 131

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A   A+ +G  +H  A +  L +NV +   +++MY+ C  +  A  VF+ I       +N
Sbjct: 132 ASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYN 191

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRD 282
           AMI+G A      ++L LF  +     +PT+ T ++VL++C            H  + ++
Sbjct: 192 AMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKN 251

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G N F  +               ++D+ A+ G +++A    E     +   D   W A++
Sbjct: 252 GFNRFVKVDTA------------LIDMYAKCGSLDDAVCVFE----NMAVRDTQAWSAMI 295

Query: 343 SACRIYG 349
            A  I+G
Sbjct: 296 MAYAIHG 302


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 255/468 (54%), Gaps = 41/468 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG  + +  + S+  ++ ML     P+  TFP ++K+   L      G  +H  ++KF
Sbjct: 111 LIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSN-GGVGRALHCGILKF 169

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-------------------------- 94
           G   D FV  SL++ Y  V ++G+A  +FD+SP+                          
Sbjct: 170 GLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKA 229

Query: 95  ---------RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                    +D  +W ++++G+ KMGD   A+ELF KMPE+N VSW+ ++  +S+  D +
Sbjct: 230 TELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPE 289

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + L  F  M E G +PN+  +VS L+ACA +GA+  GL +H+Y      + N+++ TA+V
Sbjct: 290 KALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALV 349

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY+KCG++  A  VF     K    W+ MI G A++G  +K+L+ F+ M  +GT+P   
Sbjct: 350 DMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSV 409

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            F+AVL  C+H+  V +GL  F+NM   Y +EP ++HY  VVD+L RAG ++EA KFI  
Sbjct: 410 VFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRA 469

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-W 384
                   D  VWGAL  ACR +  +E+     +KL ++      ++V   N Y   G W
Sbjct: 470 MP---ITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRW 526

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           D +A +VR  + + G  K PG S IEV+  +  F+AGDN H +A EIY
Sbjct: 527 D-DAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIY 573



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 122/306 (39%), Gaps = 68/306 (22%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T  +     +   + A  +F++   +N+  ++A++   +  S F+  +S F  M +  + 
Sbjct: 78  TQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKIS 137

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+      VL + A L     G  +H    ++ LE +  +  ++VDMY K   + SAL V
Sbjct: 138 PDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKV 197

Query: 221 F----EGISN-------------------------------KDAGAWNA----------- 234
           F    E + N                               KD G+WN+           
Sbjct: 198 FDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDM 257

Query: 235 --------------------MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
                               M++G + NGD +K+LE F  M++ G +P + T V+ L+ C
Sbjct: 258 GRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALSAC 317

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGG 333
                +  GL +   +S   G +  L     +VD+ A+ G +E AEK F E K  GL   
Sbjct: 318 AKIGALDAGLRIHNYLSG-NGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIW 376

Query: 334 DANVWG 339
              +WG
Sbjct: 377 SVMIWG 382



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 197 NVILATAVVDMY-SKCGHVHS---ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           NV  ++ VV  + S C  ++S   A+S+F+    K++  +NA+I G+A N   + S+  F
Sbjct: 69  NVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFF 128

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV-YGVEPQLEHYACVVDLLA 311
             M+K    P   TF  VL +   A +   G+    +   + +G+E        +VD+  
Sbjct: 129 VLMLKWKISPDRLTFPFVLKSA--AALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYV 186

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA-CRI 347
           +   +  A K  +E    +  G   +W  L+   CR+
Sbjct: 187 KVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRM 223


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  289 bits (740), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/419 (35%), Positives = 256/419 (61%), Gaps = 6/419 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N  K  +  +  M     + +  T   +I AC  LG  E F   +  ++ + 
Sbjct: 188 LICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE-FADSMVKYIKEN 246

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D ++ ++L++ Y        A+ +FD+  +R++V+W  +V G+ K+G+   AR+LF
Sbjct: 247 NLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLF 306

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP+R+ +SW++++  YS+ S F + + LF++M    +KP++  + SVL+ACAHLG + 
Sbjct: 307 DNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLD 366

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y +R+ ++ ++ +  +++DMY KCG V  AL VF  + +KD+ +W ++ISG+A
Sbjct: 367 VGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLA 426

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG A  +L+LF +M++ G QPT  TFV +L  C HA +V  GL  FE+M +V+G+ P +
Sbjct: 427 VNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAM 486

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY CVVDLL+R+G +++A +FI +KM  +   D  VW  LLSAC+++G + +     ++
Sbjct: 487 KHYGCVVDLLSRSGNIDKAYEFI-KKMPIV--PDVVVWRILLSACKLHGNVVLAEIATKR 543

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           L E+   D   +VL  N Y     WD +A K+R+L+ ++ ++K  G S IEV+G+V  +
Sbjct: 544 LLELDPCDSGNYVLLSNTYAGVDRWD-DAMKMRELMEDSDVQKPSGSSSIEVDGMVSNY 601



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 168/380 (44%), Gaps = 68/380 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG  Q++ P  ++  Y  M   G   NN T   L KAC  +  + + G  +H H +K 
Sbjct: 87  MIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVS-GRKIHVHALKL 145

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV ++L+  Y++  ++G A+ +FD   DRD+V+W T++ GY             
Sbjct: 146 GFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGY------------- 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                             S+ + +KEVL LF  M    +K +   +V ++ AC+HLG   
Sbjct: 193 ------------------SQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWE 234

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMY-------------------------------S 209
               +  Y K  +LE +V L   ++DMY                               +
Sbjct: 235 FADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHA 294

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           K G++ +A  +F+ +  +D  +W +MI+G +       +++LF  M+ +  +P + T  +
Sbjct: 295 KVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVAS 354

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VL+ C H   +  G  +   +   +GV+  +     ++D+  + GMVE+A +        
Sbjct: 355 VLSACAHLGKLDVGWAVHHYIRR-HGVQADIYVGNSLIDMYCKCGMVEKALEVFHR---- 409

Query: 330 LGGGDANVWGALLSACRIYG 349
           +   D+  W +++S   + G
Sbjct: 410 MKDKDSVSWTSVISGLAVNG 429



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 30/224 (13%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH+++     DPF++S ++  YSL                                 +
Sbjct: 36  LHAHLIRTQLHTDPFLMSDVIRSYSL------------------------------SSTN 65

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  +F ++     V W+ ++   S+     E + ++ +M   G+  N   L+ +  A
Sbjct: 66  LHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKA 125

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA +  I  G  +H +A +   E  + ++ A++ MY+ CG +  A  +F+G+ ++D  +W
Sbjct: 126 CARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSW 185

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           N +I G +     K+ L LFD M  +  +    T V ++  C+H
Sbjct: 186 NTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSH 229


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 159/472 (33%), Positives = 250/472 (52%), Gaps = 42/472 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+     + ++  +  M + GF P+NYT+P ++KAC + G L   G+ +H  VVK 
Sbjct: 108 MIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLW-VGLQIHGAVVKL 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
           G   + ++ + L+  Y     +  AR + D+ P RD+V+W +MV GY + G F +A    
Sbjct: 167 GLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLC 226

Query: 117 ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
                                            +++F K+ E++ +SW+ ++A Y   + 
Sbjct: 227 REMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAM 286

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             E + L+ QMQ  G++P+   + SVL AC  L A   G  +H Y +R  L  N++L  A
Sbjct: 287 PNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENA 346

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A +VF+ +  +D  +W +MIS   M+G  K ++ LF +M  SG  P 
Sbjct: 347 LIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPD 406

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV+VL  C+HA +V +G   F N+ A YG+ P +EHY C+VDLL RAG ++EA    
Sbjct: 407 WIAFVSVLAACSHAGLVDEGRYCF-NLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLT 465

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
            +        +  VWG+LLSACR+Y  + +       L ++       +VL  NIY +AG
Sbjct: 466 RQMP---MEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAG 522

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              +   VR +++  G+KK PG S +E+N  V  FLAGD  H Q+ EIY+ +
Sbjct: 523 RWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKAL 574



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 130/279 (46%), Gaps = 15/279 (5%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           ++ L D++   +      ++  Y   G+    R +F+++ ++N V ++ ++ +Y     +
Sbjct: 59  SKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLY 118

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           ++ L +F+ M   G  P+      VL AC+  G +  GL +H    +  L+ N+ +   +
Sbjct: 119 QDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGL 178

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           V MY KC  + +A  V + +  +D  +WN+M++G A NG    +L+L   M     +P  
Sbjct: 179 VSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDA 238

Query: 265 TTFVAVL-----TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            T  ++L     T+C +   V+D   +F  +      E  L  +  ++ +     M  EA
Sbjct: 239 GTMGSLLPAVTNTSCDNVLYVKD---MFVKLK-----EKSLISWNVMIAVYVNNAMPNEA 290

Query: 320 -EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
            + +++ ++ G+   DA    ++L AC       +G R+
Sbjct: 291 VDLYLQMQVHGV-EPDAVSISSVLPACGDLSAAVLGRRI 328



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           +L  N  L   ++  Y+ CG       +F+ I++K+   +N MI     NG  + +L +F
Sbjct: 66  NLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVF 125

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
             M   G  P   T+  VL  C+ +  +  GL +   +  + G++  L     +V +  +
Sbjct: 126 KTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKL-GLDMNLYIGNGLVSMYGK 184

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
              ++ A + ++E    + G D   W ++++     G+     ++ R++ ++ +
Sbjct: 185 CKWLDAARRVLDE----MPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKL 234


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 154/424 (36%), Positives = 244/424 (57%), Gaps = 8/424 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I+ +     P      Y  M   G  PN Y+F  L  AC  L  +   G  +H+H  K G
Sbjct: 54  IQTFSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYP-GQMLHSHFCKSG 112

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  D F +++LL+ Y+ +  + +AR LFD+ P RD+ TW +++ GY + G  E A ELF 
Sbjct: 113 FASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFN 172

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAIT 180
           KMP RN +SW+A+++ Y++   + + L +F  ++ E G KPNE  + SVL AC+ LGA+ 
Sbjct: 173 KMPVRNVISWTALISGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALD 232

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGV 239
            G  + +YA+     KN  ++ AV++++++CG++  A  VF+ I S ++  +WN MI G+
Sbjct: 233 IGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGL 292

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G    +L+L+D+M+    +P + TFV +L  CTH  MV +G  LFE+M + + V P+
Sbjct: 293 AVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPK 352

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C+VDLL RAG ++EA   I+         D+ +WG LL AC  +G +E+G     
Sbjct: 353 LEHYGCLVDLLGRAGELQEAYNLIQNMP---MAPDSVIWGTLLGACSFHGNVELGEVAAE 409

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L ++   +   +V+  NIY  AG W   A ++RK++    + K+ G S IEV   + EF
Sbjct: 410 SLFKLEPWNPGNYVILSNIYALAGDWSGVA-RLRKMMKGGHITKRAGYSYIEVGDGIHEF 468

Query: 419 LAGD 422
           +  D
Sbjct: 469 IVED 472



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/282 (23%), Positives = 124/282 (43%), Gaps = 40/282 (14%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +++   ++ D   A  LF+++P+ +   ++  +  +S I        L+ QM   G  PN
Sbjct: 22  LIEKLLQLPDLPYACTLFDQIPKPSVYLYNKFIQTFSSIGHPHRCWLLYCQMCSQGCSPN 81

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +     +  ACA L  +  G  +HS+  +     ++   TA++DMY+K G + SA  +F+
Sbjct: 82  QYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFD 141

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-------------------------- 256
            +  +D   WN++I+G A +G  + +LELF++M                           
Sbjct: 142 EMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEM 201

Query: 257 ------KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
                 + GT+P E +  +VL  C+    +  G  + E  +   G          V++L 
Sbjct: 202 FIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRI-EAYARNNGFFKNAYVSNAVLELH 260

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGK 350
           AR G +EEA++  +E      G   N+  W  ++    ++G+
Sbjct: 261 ARCGNIEEAQQVFDEI-----GSKRNLCSWNTMIMGLAVHGR 297


>gi|115468780|ref|NP_001057989.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|50725579|dbj|BAD33047.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113596029|dbj|BAF19903.1| Os06g0597500 [Oryza sativa Japonica Group]
 gi|125597760|gb|EAZ37540.1| hypothetical protein OsJ_21869 [Oryza sativa Japonica Group]
          Length = 530

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 245/413 (59%), Gaps = 4/413 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y++  +   +V     M   G  P+  T    + AC     L + G  +H ++   
Sbjct: 121 MVRCYIRCGWYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDL-SLGRRIHVYMDNV 179

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG +  V ++LL+ Y+    +  A  LF++ P R++++WT +V GYG  G  + AR LF
Sbjct: 180 -FGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLF 238

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +  E++ + W+A++ A  +   F+E L+LFR MQ   ++P+   +V++LT CA+LGA+ 
Sbjct: 239 NQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALD 298

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H YA++  ++ + +L TA++DMYSKCGH+  +L VF  +  +DA AW A+I G+A
Sbjct: 299 QGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLA 358

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A ++LELF  M +S  +P   TF+ VL+ C H  +V +G   F  M  VY +EP++
Sbjct: 359 TNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRV 418

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+V+LL RAG+++EAE+ I +    +      ++GALL+AC+ +G +E+  R+ ++
Sbjct: 419 EHYSCLVNLLGRAGLLDEAERLIGDV--PINKDAMPLFGALLTACKAHGNVEMSERLTKR 476

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           + E        ++L  N+Y  A    +  +VR  ++   +KK  GCS+IEV G
Sbjct: 477 ICEQDSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKNAGCSLIEVKG 529



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 171/384 (44%), Gaps = 50/384 (13%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y D+   G   +++T+P +++A  +L  L   G   HA  VK GF  D +  SSL+E Y+
Sbjct: 37  YYDLRARGLVADSFTYPFVLRAVGVL-KLSVEGRKAHAAAVKTGFRWDAYTGSSLMEMYT 95

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           ++ ++  AR +FD+ P R +V W  MV  Y + G                   W      
Sbjct: 96  MLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCG-------------------W------ 130

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                 +   ++L  QM+  G+ P+   LV+ +TAC+    ++ G  +H Y        N
Sbjct: 131 ------YSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFN 183

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +A A++DMY+K   +  A+ +FE +  ++  +W  ++SG  + G   K+  LF++   
Sbjct: 184 LPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQC-- 241

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +     + A++  C       + L LF +M  +  VEP       ++   A  G ++
Sbjct: 242 --KEKDLILWTAMINACVQHGCFEEALTLFRDMQ-MQRVEPDRFTVVTLLTCCANLGALD 298

Query: 318 EAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           + E   ++ E++   +   DA +  AL+      G IE    V+ ++     T ++  + 
Sbjct: 299 QGEWIHQYAEQRKMKI---DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIIC 355

Query: 375 SYNIYKEAG------WDMEANKVR 392
                 +AG       DM+ +KV+
Sbjct: 356 GLATNGQAGRALELFQDMQRSKVK 379



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 88/194 (45%), Gaps = 2/194 (1%)

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           + ++   +R   F  V++++  ++  G+  +      VL A   L    +G   H+ A +
Sbjct: 18  NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAVK 77

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
                +    +++++MY+  G V  A  VF+ + ++    WN M+      G    ++ L
Sbjct: 78  TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGWYSAAVAL 137

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
            ++M +SG  P   T V  +T C+ A+ +  G  +   M  V+G    + +   ++D+  
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVAN--ALLDMYT 195

Query: 312 RAGMVEEAEKFIEE 325
           +   +EEA K  E+
Sbjct: 196 KNDCLEEAVKLFEQ 209


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/442 (37%), Positives = 252/442 (57%), Gaps = 45/442 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q+   + ++ C+  M +    PN  T   ++ AC  L  LE  G ++ + V   
Sbjct: 230 MIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLE-LGKWIGSWVRDR 288

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG++  +V++L                               VD Y K G+   AR+LF
Sbjct: 289 GFGKNLQLVNAL-------------------------------VDMYSKCGEIGTARKLF 317

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M +++ + W+ ++  Y  +S ++E L LF  M    + PN+   ++VL ACA LGA+ 
Sbjct: 318 DGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALD 377

Query: 181 QGLWVHSYAKRYHLE-----KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
            G WVH+Y  + +L+      NV L T+++ MY+KCG V  A  VF  + ++   +WNAM
Sbjct: 378 LGKWVHAYIDK-NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAM 436

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ISG+AMNG A+++L LF+ M+  G QP + TFV VL+ CT A  V  G   F +M+  YG
Sbjct: 437 ISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYG 496

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVG 354
           + P+L+HY C++DLLAR+G  +EA+      MG +    D  +WG+LL+ACRI+G++E G
Sbjct: 497 ISPKLQHYGCMIDLLARSGKFDEAKVL----MGNMEMEPDGAIWGSLLNACRIHGQVEFG 552

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNG 413
             V  +L E+   +   +VL  NIY  AG WD +  K+R  +++ GMKK PGC+ IE++G
Sbjct: 553 EYVAERLFELEPENSGAYVLLSNIYAGAGRWD-DVAKIRTKLNDKGMKKVPGCTSIEIDG 611

Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
           VV EFL GD  H Q+  I+R++
Sbjct: 612 VVHEFLVGDKFHPQSENIFRML 633



 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 192/356 (53%), Gaps = 10/356 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +     P  S+  +  ML  G  PN++TFP L K+C       +    +HAH +K 
Sbjct: 98  LIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAK-SKATHEAKQLHAHALKL 156

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                P V +SL+  YS V ++  AR +FDKS  RD V++T ++ GY   G  ++AR LF
Sbjct: 157 ALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLF 216

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A++A Y +   F+E L+ F +MQE  + PN+S +VSVL+AC HL ++ 
Sbjct: 217 DEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLE 276

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+ S+ +     KN+ L  A+VDMYSKCG + +A  +F+G+ +KD   WN MI G  
Sbjct: 277 LGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYC 336

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG----LNLFENMSAVYGV 296
                +++L LF+ M++    P + TF+AVL  C     +  G      + +N+     V
Sbjct: 337 HLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNV 396

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
              +  +  ++ + A+ G VE AE+        +G      W A++S   + G  E
Sbjct: 397 N-NVSLWTSIIVMYAKCGCVEVAEQVFR----SMGSRSLASWNAMISGLAMNGHAE 447



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 131/323 (40%), Gaps = 67/323 (20%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H+ ++K G     F  S L+EF +L             SP RD+               
Sbjct: 44  IHSLIIKSGLHNTLFAQSKLIEFCAL-------------SPSRDL--------------- 75

Query: 113 FENARELFEKMPER--NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
              A  LF  +  +  N   W+ ++ A+S        L LF QM   G+ PN     S+ 
Sbjct: 76  -SYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLF 134

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC------------------- 211
            +CA   A  +   +H++A +  L  +  + T+++ MYS+                    
Sbjct: 135 KSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAV 194

Query: 212 ------------GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
                       GHV  A  +F+ I  KD  +WNAMI+G   +G  +++L  F RM ++ 
Sbjct: 195 SFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEAD 254

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             P ++T V+VL+ C H + +  G     +     G    L+    +VD+ ++ G +  A
Sbjct: 255 VSPNQSTMVSVLSACGHLRSLELG-KWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTA 313

Query: 320 EKFIEEKMGGLGGGDANVWGALL 342
            K  +    G+   D  +W  ++
Sbjct: 314 RKLFD----GMEDKDVILWNTMI 332


>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 254/439 (57%), Gaps = 9/439 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  +  P  S+  +L ML  G  P+  T+P L+KA   L   +  G+ VHA ++K 
Sbjct: 85  IIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLVKASARLSK-QKSGVSVHAQIIKT 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ +SL+  Y+    +  A  +F+    +++V+W +M+DGY K G+   A+++F
Sbjct: 144 GHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLVSWNSMLDGYAKCGEMAMAQKVF 203

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M ER+  SWS+ +  Y +  +++E +++F +M+ VG K NE  +VSVL+ACAHLGA+ 
Sbjct: 204 ESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQ 263

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISG 238
           +G  +H Y     L   ++L T++VDMY+KCG +  AL VF GI  S  D   WNAMI G
Sbjct: 264 KGRMMHQYIIDNLLPMTMVLQTSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGG 323

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G  ++SL+LF  M  +G +  E T++ +L  C H  +V++  N FE++    G+ P
Sbjct: 324 LATHGLVEESLKLFKEMQMAGIRSDEITYLCLLAACAHGGLVKEAWNFFESL-VKRGMTP 382

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
             EHYAC+VD+LARAG +  A +FI +         A++ GA+ S C  +   ++   V 
Sbjct: 383 TSEHYACMVDVLARAGQLTTAYQFICQIP---IEPTASMLGAIFSGCINHRNFDLAETVG 439

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           RKL E+   +   ++   N+Y     WD ++  +R+ +   G+KK PG S +E++ +   
Sbjct: 440 RKLIELDPNNDGRYIGLSNVYAVVKRWD-DSKSMREAMERRGVKKSPGFSFVEISEIHHR 498

Query: 418 FLAGDNRHAQAGEIYRVIH 436
           F+A D  H  + E Y ++H
Sbjct: 499 FIAHDKTHPDSDETYSMLH 517



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 129/288 (44%), Gaps = 36/288 (12%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD + +  +F ++      SW+ I+  YS   +    LS+F +M   G+ P+      ++
Sbjct: 62  GDIDYSYRVFSQISSPTIFSWNIIIRGYSNSKNPIHSLSIFLKMLRHGVAPDYLTYPFLV 121

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            A A L     G+ VH+   +   E +  +  +++ MY+ CG++  A  VFE +  K+  
Sbjct: 122 KASARLSKQKSGVSVHAQIIKTGHESDRFIQNSLIHMYASCGNIMWAHKVFESMQGKNLV 181

Query: 231 AWNAMISGVAMNGDA-------------------------------KKSLELFDRMVKSG 259
           +WN+M+ G A  G+                                ++++ +F++M   G
Sbjct: 182 SWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVG 241

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEE 318
            +  E T V+VL+ C H   ++ G  + + +  +  + P  +     +VD+ A+ G +EE
Sbjct: 242 PKANEVTMVSVLSACAHLGALQKGRMMHQYI--IDNLLPMTMVLQTSLVDMYAKCGAIEE 299

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           A  F+   +      D  +W A++     +G +E   ++++++   GI
Sbjct: 300 A-LFVFRGISK-SQTDVFIWNAMIGGLATHGLVEESLKLFKEMQMAGI 345


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 253/448 (56%), Gaps = 38/448 (8%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M+     P ++TF  L+KAC ++  L  FG  VH H+ K+GF    FV ++L++FY    
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSEL-GFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAG 59

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           K+  AR +FD+  +RDV  WTTM+  + + GD  +AR+LF++MP RN  SW+A++  YSR
Sbjct: 60  KIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSR 119

Query: 141 ISD-------------------------------FKEVLSLFRQMQEVGMKPNESGLVSV 169
           + +                               F+E L++F +MQ  G+ P+E  + ++
Sbjct: 120 LRNVESAELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATI 179

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           ++ACAHLGA+  G  +H YA     + +V + +A++DMY+KCG +  +L VF  +  K+ 
Sbjct: 180 ISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNL 239

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
             WN++I G+A++G A+++L +F RM +   +P   TF++VL  CTHA +V +G   F +
Sbjct: 240 FCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLS 299

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIY 348
           MS  + + P++EHY C+VDLL +AG++E+A + +   +M      ++ +WGALL  C+++
Sbjct: 300 MSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRM----EPNSVIWGALLGGCKLH 355

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK-KPGCS 407
             +++      +   +   +   + L  N+Y E     E   +R  + E G++K  PG S
Sbjct: 356 RNLKIAQVAVNESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSS 415

Query: 408 VIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            IE++  + +F A D  H  + EIY ++
Sbjct: 416 WIEMDRKIHQFAASDKSHLASDEIYTLL 443



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 108/248 (43%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q    + ++  + +M   G +P+  T   +I AC  LG L + G  +H + ++ 
Sbjct: 144 MIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGAL-DLGKEIHLYAMEM 202

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D ++ S+L++ Y+    +  +  +F K   +++  W ++++G    G  E      
Sbjct: 203 GFDLDVYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAE------ 256

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E L++F +MQ   +KPN    +SVL AC H G + 
Sbjct: 257 -------------------------EALAMFSRMQREKIKPNGVTFISVLGACTHAGLVE 291

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G     S ++ + +   +     +VD+  K G +  AL +   +    ++  W A++ G
Sbjct: 292 EGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLGG 351

Query: 239 VAMNGDAK 246
             ++ + K
Sbjct: 352 CKLHRNLK 359


>gi|225465641|ref|XP_002270476.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Vitis vinifera]
          Length = 539

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 254/443 (57%), Gaps = 9/443 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG+ +   P  SV  ++ ML  G  P++ T+P + KA   L  L    + VH  + K 
Sbjct: 83  IIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIAKAVARLSELR-LALAVHCRIAKE 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ +SL+  Y     +G+AR +FD+   R+ V+W  M+DGY K GD ++AR++F
Sbjct: 142 GLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSARQVF 201

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E MP+R+ VSWS+++    +  ++   L++F +M+ VG K NE  +VSVL ACAHLGA+ 
Sbjct: 202 ESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANEVTMVSVLCACAHLGALE 261

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISG 238
           QG  +H Y     +   ++L T+++DMY+KCG +  A++VF G+     D   WN +I G
Sbjct: 262 QGRTMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGG 321

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G   +SLELF  M   G  P E T++ + + C H  +V +  + F+++    G+ P
Sbjct: 322 LATHGLVHESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGK-QGMVP 380

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           + EHYAC+VD+L+RAG + EA  FI +         A++ GALL+ C  + + ++  RV 
Sbjct: 381 KSEHYACMVDVLSRAGQLAEAYDFIAQMP---MEPTASMLGALLNGCMNHRRFDLAERVG 437

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           RKL E+       ++   N+Y     WD  A  +R+ +   G+KK PG S +EV G +  
Sbjct: 438 RKLIELEPDHDGRYIGLSNVYAGVKLWD-NARMMREAMERRGVKKSPGFSFVEVLGTLHR 496

Query: 418 FLAGDNRHAQAGEIYRVIHSFLK 440
           F+A D  H    +IY ++++ ++
Sbjct: 497 FIAHDKTHNDLEKIYMMLNTIVR 519



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 138/325 (42%), Gaps = 35/325 (10%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD +++  +F ++P     +W++I+  +S+  +    +S+F +M   G+ P+      + 
Sbjct: 60  GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFIA 119

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            A A L  +   L VH    +  L  +  +A +++ MY  CG + SA  VF+ +  +++ 
Sbjct: 120 KAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSV 179

Query: 231 AWNAMISGVAMNGDAKK-------------------------------SLELFDRMVKSG 259
           +WNAM+ G A  GD                                  +L +F+RM   G
Sbjct: 180 SWNAMLDGYAKCGDLDSARQVFESMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVG 239

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +  E T V+VL  C H   +  G  + + M     +   L     ++D+ A+ G +EEA
Sbjct: 240 PKANEVTMVSVLCACAHLGALEQGRTMHQYM-VDNTMRFTLVLRTSLMDMYAKCGAIEEA 298

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNI 378
                 +   +   D  +W  ++     +G +     +++++  +GI  D  T++  ++ 
Sbjct: 299 IAVF--RGVPMDQTDVLMWNTIIGGLATHGLVHESLELFKEMQVLGIVPDEITYLCLFSA 356

Query: 379 YKEAGWDMEANKVRKLISETGMKKK 403
               G   EA    K + + GM  K
Sbjct: 357 CAHGGLVHEAWHFFKSLGKQGMVPK 381


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 255/438 (58%), Gaps = 4/438 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY      K +   +  M + G EP+ +TF  L+  C     L+  G +VH  +   
Sbjct: 160 MIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLD-LGRYVHFCIEIT 218

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V ++L++ Y+    + +A+A+FD++ +++VV+WT+M+  Y + G  E AR++F
Sbjct: 219 GVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIF 278

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP +N VSW+++++ Y R   ++E L LF +M+   + P+E+ LVS+L AC+ LG + 
Sbjct: 279 DQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLV 338

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H+Y         V L  +++DMY+KCG V +AL +F  +  K+  +WN +I  +A
Sbjct: 339 MGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALA 398

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G   ++++LF+ M   GT P E T   +L+ C+H+ +V  GL  F+ M  +Y V  ++
Sbjct: 399 LHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREI 458

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G++ EA + I          D  VWGALL ACRI+G +E+G ++ ++
Sbjct: 459 EHYACMVDLLGRGGLLGEAIELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQILKQ 515

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+       +VL  NIY EA    +  K+RKL+ + G+KK    S IE++G + EF+ 
Sbjct: 516 LLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMV 575

Query: 421 GDNRHAQAGEIYRVIHSF 438
            D RH  +  IY ++   
Sbjct: 576 DDKRHKISSSIYAMLDQL 593



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 176/386 (45%), Gaps = 80/386 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           +IRGY  ++ P  +V  +  M+  G  PN +T P ++KAC   G    +   + VH   +
Sbjct: 59  LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKAC---GCKSAYWEAVLVHGLAI 115

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G G   FV ++L+  Y +   +  AR LFD   D+ +V+W +M+ GY  MG+++    
Sbjct: 116 KLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWK---- 171

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
                                      E   LFR+M+E GM+P+    V++L+ C+    
Sbjct: 172 ---------------------------EAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRD 204

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G +VH   +   ++ ++I+  A+VDMY+KCG++HSA ++F+    K+  +W +MIS 
Sbjct: 205 LDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISA 264

Query: 239 VAMNGDA-------------------------------KKSLELFDRMVKSGTQPTETTF 267
            A +G                                 +++L+LF++M  S   P E T 
Sbjct: 265 YAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATL 324

Query: 268 VAVLTTCTHAK---MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFI 323
           V++L  C+      M +   N   +    YGV      Y  ++D+ A+ G V  A + F+
Sbjct: 325 VSILAACSQLGDLVMGKKIHNYILSNKGAYGVTL----YNSLIDMYAKCGPVVTALDIFL 380

Query: 324 EEKMGGLGGGDANVWGALLSACRIYG 349
           E     + G +   W  ++ A  ++G
Sbjct: 381 E-----MPGKNLVSWNVIIGALALHG 401



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 145/277 (52%), Gaps = 12/277 (4%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD + A+ +F+++P+ N   +++++  YS   D  + + LFR+M   G+ PNE  L  VL
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC    A  + + VH  A +  +   V +  A++ +Y  CG +H A  +F+ I++K   
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 155

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN+MI G A  G+ K++  LF +M + G +P   TFV +L+ C+ ++ +  G  +   +
Sbjct: 156 SWNSMIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCI 215

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIY 348
             + GV+  +     +VD+ A+ G +  A+   +         + NV  W +++SA   +
Sbjct: 216 E-ITGVKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQ------EKNVVSWTSMISAYAQH 268

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSY---NIYKEA 382
           G IEV  +++ ++    +  +++ +  Y     Y+EA
Sbjct: 269 GSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREA 305


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 150/418 (35%), Positives = 252/418 (60%), Gaps = 37/418 (8%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML+    PN +T+P ++KAC  +G L N G  VH  V+KFGFG++  V ++L+  Y    
Sbjct: 1   MLERKKLPNKFTYPFVLKACAGIGNL-NLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCR 59

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                      G  G  E AR++F++M + ++VSWSA++  Y R
Sbjct: 60  ---------------------------GGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVR 92

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
           +    + ++LFR+MQ  G+ P+E  +VSVL+AC  LGA+  G WV SY ++  ++KNV L
Sbjct: 93  VGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVEL 152

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           + A++DM++KCG V  A ++F  +  ++  +W ++I G+AM+G   +++ +F+ MV+SG 
Sbjct: 153 SNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGV 212

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P +  F+ +L+ C+H+ +V  G   F++M   + + P++EHY C+VD+L RAG+V+EA 
Sbjct: 213 TPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEAL 272

Query: 321 KFIEEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           KF++E        D N  VW  L++ACR +G++++G ++ R+L        S +VL  NI
Sbjct: 273 KFVQEM-----PIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNI 327

Query: 379 Y-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           Y K + W+ +  ++R+ +   GMKK PG ++IE++  + EF+AGD  HAQ+ EIY ++
Sbjct: 328 YAKMSDWE-KKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMV 384



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/281 (20%), Positives = 128/281 (45%), Gaps = 37/281 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++      ++  + +M   G  P+  T   ++ AC  LG LE  G +V ++V K 
Sbjct: 86  MIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALE-LGKWVESYVEKE 144

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
              ++  + ++L++ ++    +  A  LF    +R++V+WT+++ G              
Sbjct: 145 RVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGG-------------- 190

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                         +A + R     E +++F +M   G+ P++   + +L+AC+H G + 
Sbjct: 191 --------------LAMHGRGV---EAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVD 233

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +  S  K + +   +     +VDM  + G V  AL   + +  + +   W  +I+ 
Sbjct: 234 KGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINA 293

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279
              +G+ K   ++  +++++  +P   +   +L+   +AKM
Sbjct: 294 CRAHGELKLGEKITRQLIRN--EPMHESNYVLLSN-IYAKM 331


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 251/438 (57%), Gaps = 39/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + +M+ M  +P+  T   ++  C   G +E  G  +H+ +   
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVE-LGRQIHSWIDNH 239

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L++ YS                               K G+ E A  LF
Sbjct: 240 GFGSNLKLVNALIDLYS-------------------------------KCGEMERAHGLF 268

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  ++ +SW+ ++  Y+ I+  KE L +F++M ++G  PN+  ++S+L ACAHLGAI 
Sbjct: 269 EGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAID 328

Query: 181 QGLWVHSY--AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y   K   +  N  L T+++DMY+KCG++ +A  VF+ I NK   + NAMI G
Sbjct: 329 IGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  + +L  RM K G +P + TFV +L+ C+HA +   G  +F++M+  Y +EP
Sbjct: 389 FAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEP 448

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL R+G+ +EAE+ I          D  +WG+LL AC+I+  +E+G  + 
Sbjct: 449 KLEHYGCMIDLLGRSGLFKEAEELINSMT---MEPDGVIWGSLLKACKIHKNLELGELIA 505

Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           +KL ++   +  ++VL  NIY   A WD +  +VR L+++ G+KK PGCS IE++ +V E
Sbjct: 506 QKLMKIEPKNPGSYVLLSNIYATSARWD-DVARVRTLLNDKGLKKVPGCSSIEIDSMVHE 564

Query: 418 FLAGDNRHAQAGEIYRVI 435
           FL GD  H Q  EIY+++
Sbjct: 565 FLIGDKFHPQNKEIYKML 582



 Score =  212 bits (540), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 195/342 (57%), Gaps = 5/342 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+  ++ P  ++  Y+ M+ +G  PN+YTFP L K+C      +  G  +HA ++K+
Sbjct: 49  MIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQE-GKQIHAQILKY 107

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V +SL+  Y+    +  A  +FD S  RDVV++T M+ GY   G+ + A+++F
Sbjct: 108 GLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMF 167

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+ I  +KE L LF +M ++ +KP+ES + +VL+ C H G + 
Sbjct: 168 DEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVE 227

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +HS+   +    N+ L  A++D+YSKCG +  A  +FEG+  KD  +WN +I G A
Sbjct: 228 LGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYA 287

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L +F  M+K G  P + T +++L  C H   +  G  ++++ +   + G+  
Sbjct: 288 YINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYID-KKLKGIIT 346

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMG-GLGGGDANVWG 339
                  ++D+ A+ G +E A +  +  +   L   +A ++G
Sbjct: 347 NTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFG 388



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 133/291 (45%), Gaps = 36/291 (12%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F+ + E N +SW+ ++  ++  SD    L+L+  M  +G+ PN      +  +CA 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             A  +G  +H+   +Y L  ++ + T+++ MY++ G V  A  VF+  S++D  ++ AM
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 236 ISGVAMNGDA-------------------------------KKSLELFDRMVKSGTQPTE 264
           I+G A  G+                                K++LELF+ M+K   +P E
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           +T   VL+TCTH+  V  G  +   +   +G    L+    ++DL ++ G +E A    E
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDN-HGFGSNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
               GL   D   W  L+         +    V++++ ++G T     +LS
Sbjct: 270 ----GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLS 316


>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
          Length = 499

 Score =  288 bits (737), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 147/385 (38%), Positives = 228/385 (59%), Gaps = 6/385 (1%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMG 111
           +H+ +V+ G   DP   +SL++ Y     + +AR +FD++    DVV+W  M+DGY K G
Sbjct: 93  LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSG 152

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D   ARELF+ MP RN VSW+ ++ AY+++   +E + +FR+MQ  G++P+   L+SVL+
Sbjct: 153 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLS 212

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           AC  LG +  G WVH +  R  L + + L  A++DMY KCG V  AL VFEG+  K    
Sbjct: 213 ACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVT 272

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           W  MI+G A++G   +++ELF RM K    P + TF+AVL+ C+H  +   G   F+ M 
Sbjct: 273 WTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMV 332

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
           + Y ++P++EHY C++DLL RAG + EA   I++        +A +WGALL+A R +G  
Sbjct: 333 SQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMP---FKANAAIWGALLAAARTHGDT 389

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIE 410
           E+G +    L E+   +   ++L  NIY E   WD    ++R  + + G++  PG S I+
Sbjct: 390 ELGEQALLHLIELEPHNSGNYILLSNIYAEQERWD-AVRELRISMRDRGLRNVPGASSID 448

Query: 411 VNGVVEEFLAGDNRHAQAGEIYRVI 435
           V+G+V EF + D  H    +I  V+
Sbjct: 449 VDGMVHEFTSRDGSHPSLHKIREVL 473



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q   P+ ++  +  M   G EP+      ++ AC  LG + + G +VH  V++ 
Sbjct: 175 VIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVV-DLGEWVHRFVLRR 233

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  ++  +++++++ Y     +  A  +F+    + +VTWTTM+ G+   G    A ELF
Sbjct: 234 GLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAVELF 293

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M + N                               + PN+   ++VL+ C+H+G   
Sbjct: 294 RRMEKEN-------------------------------VSPNDITFLAVLSVCSHVGLTD 322

Query: 181 QGLW-VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
            G W   +   +Y ++  V     ++D+  + G +  A  + + +  K +A  W A+++ 
Sbjct: 323 LGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAA 382

Query: 239 VAMNGDAK 246
              +GD +
Sbjct: 383 ARTHGDTE 390


>gi|125555946|gb|EAZ01552.1| hypothetical protein OsI_23585 [Oryza sativa Indica Group]
          Length = 530

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 244/413 (59%), Gaps = 4/413 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y++      +V     M   G  P+  T    + AC     L + G  +H ++   
Sbjct: 121 MVRCYIRCGRYSAAVALSEQMERSGVTPDRVTLVTAVTACSRARDL-SLGRRIHVYMDNV 179

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG +  V ++LL+ Y+    +  A  LF++ P R++++WT +V GYG  G  + AR LF
Sbjct: 180 -FGFNLPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLF 238

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +  E++ + W+A++ A  +   F+E L+LFR MQ   ++P+   +V++LT CA+LGA+ 
Sbjct: 239 NQCKEKDLILWTAMINACVQHGCFEEALTLFRDMQMQRVEPDRFTVVTLLTCCANLGALD 298

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H YA++  ++ + +L TA++DMYSKCGH+  +L VF  +  +DA AW A+I G+A
Sbjct: 299 QGEWIHQYAEQRKMKIDAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIICGLA 358

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A ++LELF  M +S  +P   TF+ VL+ C H  +V +G   F  M  VY +EP++
Sbjct: 359 TNGQAGRALELFQDMQRSKVKPDGVTFIGVLSACCHGGLVDEGRKQFHAMREVYQIEPRV 418

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+V+LL RAG+++EAE+ I +    +      ++GALL+AC+ +G +E+  R+ ++
Sbjct: 419 EHYSCLVNLLGRAGLLDEAERLIGDV--PINKDAMPLFGALLTACKAHGNVEMSERLTKR 476

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           + E        ++L  N+Y  A    +  +VR  ++   +KK  GCS+IEV G
Sbjct: 477 ICEQDSQITDVNLLMSNVYATASRWEDVIRVRGKMAHPTVKKTAGCSLIEVKG 529



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 171/384 (44%), Gaps = 50/384 (13%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y D+   G   +++T+P +++A  +L  L   G   HA  +K GF  D +  SSL+E Y+
Sbjct: 37  YYDLRARGLVADSFTYPFVLRAVGVL-KLSVEGRKAHAAAIKTGFRWDAYTGSSLMEMYT 95

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           ++ ++  AR +FD+ P R +V W  MV  Y + G +  A                     
Sbjct: 96  MLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAA--------------------- 134

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                     ++L  QM+  G+ P+   LV+ +TAC+    ++ G  +H Y        N
Sbjct: 135 ----------VALSEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNV-FGFN 183

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +A A++DMY+K   +  A+ +FE +  ++  +W  ++SG  + G   K+  LF++   
Sbjct: 184 LPVANALLDMYTKNDCLEEAVKLFEQMPARNIISWTILVSGYGLAGQLDKARVLFNQC-- 241

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +     + A++  C       + L LF +M  +  VEP       ++   A  G ++
Sbjct: 242 --KEKDLILWTAMINACVQHGCFEEALTLFRDMQ-MQRVEPDRFTVVTLLTCCANLGALD 298

Query: 318 EAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           + E   ++ E++   +   DA +  AL+      G IE    V+ ++     T ++  + 
Sbjct: 299 QGEWIHQYAEQRKMKI---DAVLGTALIDMYSKCGHIEKSLEVFWRMQGRDATAWTAIIC 355

Query: 375 SYNIYKEAG------WDMEANKVR 392
                 +AG       DM+ +KV+
Sbjct: 356 GLATNGQAGRALELFQDMQRSKVK 379



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 88/194 (45%), Gaps = 2/194 (1%)

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           + ++   +R   F  V++++  ++  G+  +      VL A   L    +G   H+ A +
Sbjct: 18  NVLIRTLARRGSFARVMAVYYDLRARGLVADSFTYPFVLRAVGVLKLSVEGRKAHAAAIK 77

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
                +    +++++MY+  G V  A  VF+ + ++    WN M+      G    ++ L
Sbjct: 78  TGFRWDAYTGSSLMEMYTMLGRVDIARKVFDEMPSRALVLWNMMVRCYIRCGRYSAAVAL 137

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
            ++M +SG  P   T V  +T C+ A+ +  G  +   M  V+G    + +   ++D+  
Sbjct: 138 SEQMERSGVTPDRVTLVTAVTACSRARDLSLGRRIHVYMDNVFGFNLPVAN--ALLDMYT 195

Query: 312 RAGMVEEAEKFIEE 325
           +   +EEA K  E+
Sbjct: 196 KNDCLEEAVKLFEQ 209


>gi|242045040|ref|XP_002460391.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
 gi|241923768|gb|EER96912.1| hypothetical protein SORBIDRAFT_02g027420 [Sorghum bicolor]
          Length = 573

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 251/435 (57%), Gaps = 20/435 (4%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVV 69
           P L++  +  +L  G +P+   +   + +C   G        +HAH  K GF      V 
Sbjct: 59  PHLALRLFDHLLRSGADPDPAAYELALASCA-RGKDRATAAQLHAHAAKRGFLASHRRVR 117

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG-DFENARELFEKMPERNA 128
             L+  Y++   +  AR +FD   D D+V W  ++ GY + G D +  R+ F +MP R++
Sbjct: 118 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDADLLRDFFARMPSRDS 177

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           VSW+ +++      ++ E +++FR+M   QE   +P+   LVSV++A A+LGA+ QGLW 
Sbjct: 178 VSWNTVLSLCVVNGEYDEAIAVFREMLASQEC--QPDRVTLVSVVSAIAYLGALAQGLWA 235

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA-GAWNAMISGVAMNGD 244
           H+Y  R  +E    L++A+++MYSKCG +  A+ VF+ +  K +   WNAM++G   NG 
Sbjct: 236 HAYVIRKGVEVEEKLSSALINMYSKCGFLEGAVYVFDNVRGKRSLDTWNAMLAGFTANGC 295

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           + ++L LF RM  +G  P + TF  +L  C+H  +V +G+  F+ MS VYG+EP + HY 
Sbjct: 296 SGRALALFTRMETTGLMPNKITFNCILNACSHGGLVEEGMRCFQRMSRVYGIEPDIAHYG 355

Query: 305 CVVDLLARAGMVEEAEKFIE----EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           C+VDL  RAGM E+AE+ I+    E        DA++  ALL ACR +  +E+G +   +
Sbjct: 356 CMVDLFCRAGMFEKAEEIIQIMPMEP-------DASMLKALLGACRTHKNLELGKKAGHR 408

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E    D + +VL  NIY   G     +KVRKL+ + G+ K PG S +E+NGV+ EF++
Sbjct: 409 LIEAAPNDHAGYVLLSNIYALDGNWGRVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFIS 468

Query: 421 GDNRHAQAGEIYRVI 435
           GD  H++  +IY+++
Sbjct: 469 GDKSHSRKRDIYKML 483


>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
           sativa Japonica Group]
          Length = 503

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 147/385 (38%), Positives = 228/385 (59%), Gaps = 6/385 (1%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTWTTMVDGYGKMG 111
           +H+ +V+ G   DP   +SL++ Y     + +AR +FD++    DVV+W  M+DGY K G
Sbjct: 97  LHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKSG 156

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D   ARELF+ MP RN VSW+ ++ AY+++   +E + +FR+MQ  G++P+   L+SVL+
Sbjct: 157 DLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLS 216

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           AC  LG +  G WVH +  R  L + + L  A++DMY KCG V  AL VFEG+  K    
Sbjct: 217 ACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVT 276

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           W  MI+G A++G   +++ELF RM K    P + TF+AVL+ C+H  +   G   F+ M 
Sbjct: 277 WTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMV 336

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
           + Y ++P++EHY C++DLL RAG + EA   I++        +A +WGALL+A R +G  
Sbjct: 337 SQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMP---FKANAAIWGALLAAARTHGDT 393

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIE 410
           E+G +    L E+   +   ++L  NIY E   WD    ++R  + + G++  PG S I+
Sbjct: 394 ELGEQALLHLIELEPHNSGNYILLSNIYAEQERWD-AVRELRISMRDRGLRNVPGASSID 452

Query: 411 VNGVVEEFLAGDNRHAQAGEIYRVI 435
           V+G+V EF + D  H    +I  V+
Sbjct: 453 VDGMVHEFTSRDGSHPSLHKIREVL 477



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/248 (21%), Positives = 110/248 (44%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q   P+ ++  +  M   G EP+      ++ AC  LG + + G +VH  V++ 
Sbjct: 179 VIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVV-DLGEWVHRFVLRR 237

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  ++  +++++++ Y     +  A  +F+    + +VTWTTM+ G+   G    A ELF
Sbjct: 238 GLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGLEAVELF 297

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M + N                               + PN+   ++VL+ C+H+G   
Sbjct: 298 RRMEKEN-------------------------------VSPNDITFLAVLSVCSHVGLTD 326

Query: 181 QGLW-VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
            G W   +   +Y ++  V     ++D+  + G +  A  + + +  K +A  W A+++ 
Sbjct: 327 LGRWYFKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAA 386

Query: 239 VAMNGDAK 246
              +GD +
Sbjct: 387 ARTHGDTE 394


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  288 bits (736), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 254/441 (57%), Gaps = 11/441 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-----PNNYTFPPLIKACVILGPLENFGMFVHA 55
           MIR Y       L++  +  ML          P+ +TFP ++K C  L    N G  VH 
Sbjct: 57  MIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGL-MCYNLGKQVHG 115

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           H  KFG   +  + +SL+E Y     +  A  +F++  +RD V+W T++ G+ ++G    
Sbjct: 116 HAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRR 175

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR +FE++ ++   SW+AI++ Y+RI      L  FR+MQ V ++ +E  LVSVL ACA 
Sbjct: 176 ARAIFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQ 235

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G W+H YA +    +++ +  A++++Y+K G +     +F  ++ +D  +W+ M
Sbjct: 236 LGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTM 295

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+A +G A++++ELF  M K+  +P   TFV +L+ C HA ++ +GL  FE+M     
Sbjct: 296 IVGLANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDN 355

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +EP +EHY C+V+LL  +G +++A + I +KM      D+++WG L S+CR +G +E+  
Sbjct: 356 IEPGVEHYGCLVNLLGLSGRLDQALELI-KKMP--MKPDSDIWGLLSSSCRSHGNLEIVA 412

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                L E+   D   ++   N+Y + G WD   +++RKL+S   M K PGCS IEV+ +
Sbjct: 413 IAMEHLLELEPDDTGNYITLSNLYADLGKWD-GVSRMRKLMSSKYMNKTPGCSSIEVDNM 471

Query: 415 VEEFLAGDNRHAQAGEIYRVI 435
           V+E+ +GD+    +  IYRV+
Sbjct: 472 VQEYASGDDSKPFSKAIYRVL 492



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 140/329 (42%), Gaps = 45/329 (13%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAHVVKF      F+V                               T MVD     G+
Sbjct: 7   IHAHVVKFSLSXSSFLV-------------------------------TKMVDMCNHHGE 35

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-----EVGMKPNESGLV 167
            E A  LF+++ + NA  ++A++ AY     +   +++ +QM      E    P++    
Sbjct: 36  TEYANLLFKRVADPNAFLYNAMIRAYKHNKVYILAITVHKQMLGHSHGENPXFPDKFTFP 95

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
            V+  CA L     G  VH +A ++  + N ++  ++V+MY KC  +  A  VFE ++ +
Sbjct: 96  FVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTER 155

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           DA +WN +ISG    G  +++  +F+ +       T  ++ A+++           L  F
Sbjct: 156 DAVSWNTLISGHVRLGQMRRARAIFEEL----QDKTIFSWTAIVSGYARIGCHAVALEFF 211

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE--KFIEEKMGGLGGGDANVWGALLSAC 345
             M  V  +E        V+   A+ G +E  +      +K G L   D  V  AL+   
Sbjct: 212 RRMQMV-DIELDEISLVSVLPACAQLGALELGKWIHIYADKAGFL--RDICVCNALIEVY 268

Query: 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
              G ++ G R++ K+ E  +  +ST ++
Sbjct: 269 AKRGSMDEGRRLFHKMNERDVISWSTMIV 297


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 250/430 (58%), Gaps = 11/430 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFY 76
           +++M+  G EP+  T   ++ AC  +  ++  G  +HA VVK   F  D  + ++LL+ Y
Sbjct: 240 FVEMIKCGVEPDEVTLASVVSACATISAIKE-GQQIHARVVKCDEFRNDLILGNALLDMY 298

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           +  +++  AR +FD  P R VV+ T+MV GY K    + AR +F  M  ++ ++W+A++A
Sbjct: 299 AKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIA 358

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR----- 191
             ++  + +E L LFR ++   + P      ++L ACA+L  +  G   HS+  +     
Sbjct: 359 GCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRF 418

Query: 192 -YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
            Y  + +V +  +++DMY KCG V +   VF+ +  KD  +WNAMI G A NG   K+LE
Sbjct: 419 QYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALE 478

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           +F +M++SG  P   T + VL  C+HA ++ +G   F +M+A +G+ P  +HY C+VDLL
Sbjct: 479 VFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLL 538

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
            RAG +EEA+  IEE        DA VWG+LL+AC+++  I++G  V +KL E+   +  
Sbjct: 539 GRAGYLEEAKNLIEEMS---MQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEVDPENSG 595

Query: 371 THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGE 430
            +VL  N+Y E        +VRKL+ + G+ K+PGCS IE+ G +  F+  D RHA+  E
Sbjct: 596 PYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGELNVFMVKDKRHARKKE 655

Query: 431 IYRVIHSFLK 440
           IY V+ + L+
Sbjct: 656 IYMVLRTILQ 665



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 144/268 (53%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA ++K  F  + F+ + L++ Y     +  AR LFD+  +R++ +W +++  + K G 
Sbjct: 41  VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF 100

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            ++A  +FEKMP+ +  SW+++++ + +   F E L  F QM   G   NE    S L+A
Sbjct: 101 LDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSA 160

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA L  +  G  +HS   R +   +V + +A+VDMYSKCG V  A SVF+ ++ +   +W
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSW 220

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N++I+    NG   ++L++F  M+K G +P E T  +V++ C     +++G  +   +  
Sbjct: 221 NSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVK 280

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAE 320
                  L     ++D+ A+   + EA 
Sbjct: 281 CDEFRNDLILGNALLDMYAKCNRINEAR 308



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 173/405 (42%), Gaps = 79/405 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+ Q      ++  +  M   GF  N Y+F   + AC  L  L+  G  +H+ V + 
Sbjct: 122 MISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLK-LGSQIHSLVYRS 180

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            +  D ++ S+L++ YS   ++  A+++FD+   R  V+W +++  Y + G  + A ++F
Sbjct: 181 NYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIF 240

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                           +M + G++P+E  L SV++ACA + AI 
Sbjct: 241 V-------------------------------EMIKCGVEPDEVTLASVVSACATISAIK 269

Query: 181 QGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--------------- 224
           +G  +H+   K      ++IL  A++DMY+KC  ++ A  +F+ +               
Sbjct: 270 EGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGY 329

Query: 225 -------------SN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                        SN   KD   WNA+I+G   NG+ +++L LF  + +    PT  TF 
Sbjct: 330 AKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFG 389

Query: 269 AVLTTCTHAKMVRDGLN-----LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
            +L  C +   ++ G       L       YG +  +     ++D+  + G VE   +  
Sbjct: 390 NLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVF 449

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNR---VWRKLAEMG 365
           +  +      D   W A++     Y +   GN+   V+ K+ E G
Sbjct: 450 QHML----EKDCVSWNAMIVG---YAQNGFGNKALEVFCKMLESG 487



 Score = 47.4 bits (111), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 40/238 (16%)

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV------- 214
           + S    +L  CA   +      VH+   +        +   ++D+Y KCG V       
Sbjct: 18  DSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLF 77

Query: 215 ------------------------HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
                                     A+ +FE +   D  +WN+MISG   +G   ++L 
Sbjct: 78  DRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALV 137

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY--ACVVD 308
            F +M   G    E +F + L+ C   + ++ G  +    S VY      + Y  + +VD
Sbjct: 138 YFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIH---SLVYRSNYLSDVYMGSALVD 194

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           + ++ G VE A+   +E    +       W +L++     G ++   +++ ++ + G+
Sbjct: 195 MYSKCGRVEYAQSVFDE----MTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGV 248


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 153/436 (35%), Positives = 240/436 (55%), Gaps = 37/436 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y  +N    SVF Y  M   G  P++ TFP ++K+   L   E  G  +H  +++ 
Sbjct: 113 MIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQE-LGKAIHCCIIQM 171

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + +V                                T +V+ YG      +AR++F
Sbjct: 172 GFESNVYVS-------------------------------TALVNMYGTCSSVSDARQVF 200

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P+RN VSW+A++  Y+    F++V+ +FR+MQ  G KP E  +V VL ACAHLGA+ 
Sbjct: 201 DEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLGALN 260

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+  Y     L  NV + TA++DMY+KCG V  A  +F+ +  K+   WN +ISG A
Sbjct: 261 QGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNVYTWNVLISGYA 320

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           MNG  + +L+ F RM+    +P E TF+ VL  C H  +V +G   F +M   +G+ P++
Sbjct: 321 MNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRI 380

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG ++EA++ I+         D  +W  LL ACRI+G I++G    +K
Sbjct: 381 EHYGCMVDLLGRAGFLDEAQQLIQAMS---MQPDPIIWRELLGACRIHGNIQLGEFAIKK 437

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +VL  N+Y ++  WD +  +VR+++    ++K PGCS IE++ VV EF+
Sbjct: 438 LLELEPNNGENYVLLANLYARDQRWD-KVGEVREMMDCRRVRKVPGCSSIEIDNVVYEFV 496

Query: 420 AGDNRHAQAGEIYRVI 435
             +       E+Y+++
Sbjct: 497 VSNYIKPGFEEVYKLL 512


>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Brachypodium distachyon]
          Length = 527

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 243/413 (58%), Gaps = 4/413 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y++      ++    +M   G  P+  T    +  C   G L + G  +HA++   
Sbjct: 118 MIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDL-SLGRRIHAYMDGV 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG    V ++LL+ Y     +  A  LF++ P R++++WT +V GY   G  + AR LF
Sbjct: 177 -FGFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLF 235

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +  E++ + W+A++ A  +   F+E LSLFR+MQ   ++P+   +V++LT CA+LGA+ 
Sbjct: 236 YQCSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALD 295

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H +A    ++ + +L TA++DMY+KCGHV  ++ VFE +  +D  AW ++I G+A
Sbjct: 296 QGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLA 355

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A ++LELF+ M +S  +P   TF+ VL+ C H  +V +G   F  M  VY + P++
Sbjct: 356 TNGQAGRALELFEDMERSKVKPDSITFIGVLSACCHGGLVDEGRKQFHAMKDVYRIPPRI 415

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+V+LL RAG+++EAEK I +    +      ++GALL+AC+  G +E+  R+ ++
Sbjct: 416 EHYSCLVNLLGRAGLLDEAEKLIRDIQ--INKDAMPLFGALLTACKAQGNVEMSERLTKR 473

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           + E G      ++L  N+Y  A    +A +VR  ++   +KK  GCS+IEV G
Sbjct: 474 IGEQGYQIPDVNLLMSNVYATASRWEDAIRVRSKMAHPTIKKTAGCSLIEVKG 526



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 171/381 (44%), Gaps = 44/381 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y D+   G   +++T+P +++A  +L  L   G   HA  +K GF  D +  SSL++ Y+
Sbjct: 34  YYDLRGRGLVADSFTYPFVLRAIGVL-KLSVEGRKAHAAAMKTGFWWDAYTASSLMDMYT 92

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           L                               +G  + AR+LF++MP R  V W+ ++  
Sbjct: 93  L-------------------------------LGRADVARKLFDEMPHRALVVWNMMIRC 121

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y R   +   ++L  +M+  G+ P++  LV+ +T C+  G ++ G  +H+Y        +
Sbjct: 122 YVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGV-FGFS 180

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +A A++DMY K G +  A+ +FE + +++  +W  ++SG A  G   K+  LF +   
Sbjct: 181 LPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQC-- 238

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
             ++     + A++  C       + L+LF  M  +  VEP       ++   A  G ++
Sbjct: 239 --SEKDLIMWTAMINACVQHGCFEEALSLFREMQ-MQRVEPDRFTIVTLLTCCANLGALD 295

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           + E   +  +      DA +  AL+      G ++    V+ ++     T +++ +    
Sbjct: 296 QGEWIHQFAVDRKMKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLA 355

Query: 378 IYKEAGW------DMEANKVR 392
              +AG       DME +KV+
Sbjct: 356 TNGQAGRALELFEDMERSKVK 376



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP R+    + ++   +R   F  V++++  ++  G+  +      VL A   L    +G
Sbjct: 9   MPLRDC---NLLIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEG 65

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
              H+ A +     +   A++++DMY+  G    A  +F+ + ++    WN MI      
Sbjct: 66  RKAHAAAMKTGFWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRC 125

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G    ++ L + M +SG  P + T V  +T C+ A  +  G  +   M  V+G    + +
Sbjct: 126 GRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSLPVAN 185

Query: 303 YACVVDLLARAGMVEEAEKFIEE 325
              ++D+  + G +EEA K  E+
Sbjct: 186 --ALLDMYMKNGCLEEAVKLFEQ 206


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 149/389 (38%), Positives = 235/389 (60%), Gaps = 5/389 (1%)

Query: 49  FGMFVHAHVVKFGFGEDPFV--VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDG 106
            G  +HA+V++    E   V   ++LL+ Y+    +G AR LF+    + VV+WT M+ G
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
             +    E AR LF+    R+ + W+A+++AY++ +   +  +LF QM+  G++P +  +
Sbjct: 303 CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTI 362

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           VS+L+ CA  GA+  G WVHSY  +  +E + IL TA+VDMY+KCG +++A  +F    +
Sbjct: 363 VSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAIS 422

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           +D   WNA+I+G AM+G  +++L++F  M + G +P + TF+ +L  C+HA +V +G  L
Sbjct: 423 RDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKL 482

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
           FE M   +G+ PQ+EHY C+VDLL RAG+++EA + I+         +  VWGAL++ACR
Sbjct: 483 FEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMP---IKPNTIVWGALVAACR 539

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGC 406
           ++   ++G     +L E+   +   +VL  NIY  A    +A  VRK +   GMKK+PG 
Sbjct: 540 LHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGH 599

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           SVIEVNG V EFL GD  H Q   I  ++
Sbjct: 600 SVIEVNGTVHEFLMGDQSHPQIRRINEML 628



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 174/399 (43%), Gaps = 70/399 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y + N P+ ++  Y  +  M FE +N+  P ++KAC  +      G  +H  V+K 
Sbjct: 95  VITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVS-WTQLGKEIHGFVLKK 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV ++L+  Y     +  AR +FDK  +RDVV+W+TM+            R L 
Sbjct: 154 GLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMI------------RSL- 200

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                             SR  +F   L L R+M  + ++P+E  +VS++   A    + 
Sbjct: 201 ------------------SRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMR 242

Query: 181 QGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEGIS------------- 225
            G  +H+Y  R    ++  V   TA++DMY+KCGH+  A  +F G++             
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302

Query: 226 ------------------NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
                             N+D   W AM+S  A      ++  LFD+M  SG +PT+ T 
Sbjct: 303 CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTI 362

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V++L+ C  A  +  G  +   +     VE        +VD+ A+ G +  A +   E +
Sbjct: 363 VSLLSLCAVAGALDLGKWVHSYIDK-ERVEVDCILNTALVDMYAKCGDINAAGRLFIEAI 421

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
                 D  +W A+++   ++G  E    ++ ++   G+
Sbjct: 422 ----SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGV 456



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/230 (21%), Positives = 105/230 (45%), Gaps = 13/230 (5%)

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           +  W+ ++ +Y++ +  +  L+++ Q++++  + +     SVL AC  +     G  +H 
Sbjct: 89  SAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHG 148

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           +  +  L+++V +  A++ MY +C  V  A  VF+ +  +D  +W+ MI  ++ N +   
Sbjct: 149 FVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM 208

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY---- 303
           +LEL   M     +P+E   V+++        +R G    + M A        EH     
Sbjct: 209 ALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG----KAMHAYVIRNSNNEHMGVPT 264

Query: 304 -ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
              ++D+ A+ G +  A +       GL       W A+++ C    ++E
Sbjct: 265 TTALLDMYAKCGHLGLARQLF----NGLTQKTVVSWTAMIAGCIRSNRLE 310


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 159/474 (33%), Positives = 262/474 (55%), Gaps = 42/474 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           +IRGY  ++ P  +V  +  M+  G  PN +T P ++KAC   G    +   + VH   +
Sbjct: 59  LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKAC---GCKSAYWEAVLVHGLAI 115

Query: 59  KFGFGEDPFVVSSLLEFY---SLVH-------------------------------KMGT 84
           K G G   FV ++L+  Y    L+H                                + +
Sbjct: 116 KLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLIDIIVRNALVDMYAKCGNLHS 175

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A+A+FD++ +++VV+WT+M+  Y + G  E AR++F++MP +N VSW+++++ Y R   +
Sbjct: 176 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 235

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           +E L LF +M+   + P+E+ LVS+L AC+ LG +  G  +H+Y         V L  ++
Sbjct: 236 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSL 295

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KCG V +AL +F  +  K+  +WN +I  +A++G   ++++LF+ M   GT P E
Sbjct: 296 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 355

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            T   +L+ C+H+ +V  GL  F+ M  +Y V  ++EHYAC+VDLL R G++ EA + I 
Sbjct: 356 ITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIG 415

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
                    D  VWGALL ACRI+G +E+G ++ ++L E+       +VL  NIY EA  
Sbjct: 416 RMP---MKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQR 472

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
             +  K+RKL+ + G+KK    S IE++G + EF+  D RH  +  IY ++   
Sbjct: 473 WEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQL 526



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 126/308 (40%), Gaps = 78/308 (25%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD + A+ +F+++P+ N   +++++  YS   D  + + LFR+M   G+ PNE  L  VL
Sbjct: 36  GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 95

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---- 226
            AC    A  + + VH  A +  +   V +  A++ +Y  CG +H A  +F+ I++    
Sbjct: 96  KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLI 155

Query: 227 ------------------------------KDAGAWNAMISGVAMNGDA----------- 245
                                         K+  +W +MIS  A +G             
Sbjct: 156 DIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMP 215

Query: 246 --------------------KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK---MVRD 282
                               +++L+LF++M  S   P E T V++L  C+      M + 
Sbjct: 216 GKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKK 275

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWGAL 341
             N   +    YGV      Y  ++D+ A+ G V  A + F+E     + G +   W  +
Sbjct: 276 IHNYILSNKGAYGVTL----YNSLIDMYAKCGPVVTALDIFLE-----MPGKNLVSWNVI 326

Query: 342 LSACRIYG 349
           + A  ++G
Sbjct: 327 IGALALHG 334


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/344 (42%), Positives = 215/344 (62%), Gaps = 5/344 (1%)

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           LFD     DV     ++D Y K G    AR+LF  MP +N VSW+++++  +    FKE 
Sbjct: 266 LFDV--HSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEA 323

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L +FR+MQ +G+KP+   LV VL +CA+LG +  G WVHSY  + H++ +  +A A+VDM
Sbjct: 324 LHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDM 383

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG +  A  VF+ +  KD  ++ AMI G AM+G A ++L +F  M + G +P   T 
Sbjct: 384 YAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTL 443

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V VL+ C+HA ++ +G   F++MS +Y ++PQ EHY C+VDLL RAG++ EAE F   KM
Sbjct: 444 VGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAF-TNKM 502

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
             +   DA+VWG+LL AC+I+ K+E+G  V +KL EM       ++L  NIY  A    +
Sbjct: 503 PIV--PDASVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRD 560

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           A K RK + +  +KK PGCS IEV+G+V EF  G+  H ++ E+
Sbjct: 561 ALKWRKAMKQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREM 604



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 165/357 (46%), Gaps = 54/357 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML +G  P+ YT P L+KAC          + +HAH +K G   + FV ++L+ FY+
Sbjct: 126 YRQMLLIGLSPDTYTLPYLLKACSQSHAFIE-ALQIHAHSIKTGLSSNLFVKNTLMRFYA 184

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     V G+      E   ++F++ P  + +SW+ ++ A
Sbjct: 185 --------------------------VSGF-----IEAVEKVFDQGPHWDLISWTTLIQA 213

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR--YHLE 195
           YS++    E ++ F +M       +   LV VL+AC+ LG  T G  + +Y     + + 
Sbjct: 214 YSKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVH 270

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +V L  A++DMY KCG  H A  +F  +  K+  +WN+MISG+A  G  K++L +F RM
Sbjct: 271 SDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRM 330

Query: 256 VKSGTQPTETTFVAVLTTCTH------AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
              G +P   T V VL +C +       K V   ++   +M A   V   L      VD+
Sbjct: 331 QTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDK-NHMKADGYVANAL------VDM 383

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            A+ G +++A    +     +   D   + A++    ++GK +    ++ ++  MG+
Sbjct: 384 YAKCGSIDQAFMVFQ----AMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGV 436



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 118/275 (42%), Gaps = 12/275 (4%)

Query: 131 WSAIMAAYSRISD-FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           ++AI+ + S  ++ F  + SL+RQM  +G+ P+   L  +L AC+   A  + L +H+++
Sbjct: 105 FNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHS 164

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +  L  N+ +   ++  Y+  G + +   VF+   + D  +W  +I   +  G   +++
Sbjct: 165 IKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAI 224

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS-AVYGVEPQLEHYACVVD 308
             F RM          T V VL+ C+       G  +   M   ++ V   +     ++D
Sbjct: 225 AAFFRM---NCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLD 281

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-T 367
           +  + G    A +        +   +   W +++S     G  +    ++R++  MG+  
Sbjct: 282 MYLKCGQPHLARQLFHL----MPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKP 337

Query: 368 DFSTHVLSYNIYKEAGWDMEANK-VRKLISETGMK 401
           D  T V   N     G D+E  K V   I +  MK
Sbjct: 338 DSVTLVGVLNSCANLG-DLELGKWVHSYIDKNHMK 371


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 230/373 (61%), Gaps = 4/373 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++LL+ Y     +  ARA+FD+  +++V+ WT+MV GY   G  + ARELFE+ P R+ V
Sbjct: 254 NALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIV 313

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
            W+A++  Y + + F E L LFR+MQ   ++P+   LV++L  CA  GA+ QG W+H Y 
Sbjct: 314 LWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHGYI 373

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
               +  + ++ TA+VD+Y+KCG V  AL VF  +  +D  +W ++I G+A+NG   K+L
Sbjct: 374 HENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSKAL 433

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           + F +M ++G +P + TF+ VLT C H  +V +G   F++M+  Y ++P+ EHY+C++DL
Sbjct: 434 DFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDL 493

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           L RAG+++EAE     +M  +   D  V  + +LLSACR YG +++  RV R+L  + + 
Sbjct: 494 LCRAGLLDEAEL--LLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVK 551

Query: 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
           D S H L  ++Y  A    +   VR+ + E G++K PGCS IEVNGV+ EF+ G   H +
Sbjct: 552 DSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHME 611

Query: 428 AGEIYRVIHSFLK 440
             +I+ V+    K
Sbjct: 612 MDDIHSVLGQVTK 624



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 127/247 (51%), Gaps = 37/247 (14%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           NF K+ V  + ++   G  P+N+T PP+ KA   LG +   G  VH +VVK GF  D  V
Sbjct: 96  NFRKVLVL-FSELRKQGLNPDNFTLPPVFKAMGCLGKVVE-GEKVHGYVVKSGF--DACV 151

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            +S++  Y  + KM  A+ +FD+ P+RDVV+W  ++  Y     FE+A            
Sbjct: 152 CNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDA------------ 199

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
                              +++FR+M +E  +K +E+ +VS L+AC+ L     G  +H 
Sbjct: 200 -------------------IAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHR 240

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           Y     LE    +  A++DMY KCG V  A ++F+ + NK+   W +M+SG A NG   +
Sbjct: 241 YVD-AELEMTTKIGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDE 299

Query: 248 SLELFDR 254
           + ELF+R
Sbjct: 300 ARELFER 306



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 123/258 (47%), Gaps = 12/258 (4%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           V ++ ++ A ++  +F++VL LF ++++ G+ P+   L  V  A   LG + +G  VH Y
Sbjct: 82  VMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGKVVEGEKVHGY 141

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             +   +  V    +V+ MY   G +  A  VF+ I  +D  +WN +IS    +   + +
Sbjct: 142 VVKSGFDACV--CNSVMGMYGALGKMEVAKKVFDEIPERDVVSWNVLISSYVGHRKFEDA 199

Query: 249 LELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           + +F RM + S  +  E T V+ L+ C+  +    G  +   + A   +  ++ +   ++
Sbjct: 200 IAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTKIGN--ALL 257

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           D+  + G V++A    +E    +G  +   W +++S     G ++    ++ +     I 
Sbjct: 258 DMYCKCGCVDKARAIFDE----MGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIV 313

Query: 368 DFSTHV---LSYNIYKEA 382
            ++  +   + +N++ EA
Sbjct: 314 LWTAMINGYVQFNLFDEA 331



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 93/213 (43%), Gaps = 33/213 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q N    ++  +  M      P+N+    L+K C   G LE  G ++H ++ + 
Sbjct: 318 MINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQ-GKWLHGYIHEN 376

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y+    +  A  +F +  +RD  +WT+++ G              
Sbjct: 377 SITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGL------------- 423

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                       A+    S+  DF      F QM+E G +P++   + VLTAC H G + 
Sbjct: 424 ------------AVNGMTSKALDF------FSQMEEAGFRPDDITFIGVLTACNHGGLVE 465

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           +G  +  S  K Y ++      + ++D+  + G
Sbjct: 466 EGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAG 498


>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
 gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
          Length = 506

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 143/389 (36%), Positives = 232/389 (59%), Gaps = 6/389 (1%)

Query: 49  FGMFVHAHVVKFG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY 107
            G  +H+ +++ G    D  V +SL++ Y     +  AR++F +   RDVV W  M+ GY
Sbjct: 96  LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGY 155

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
            K GD  +ARELF+ MPERN VSW+ ++  Y+++   +E + +FR+MQ  G++P+   L+
Sbjct: 156 VKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALL 215

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           SVL+AC  LGA+  G WVH +  R  L + + L  +++DMY KCG +  A+ VFEG+  K
Sbjct: 216 SVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEK 275

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
               W  +I+G A++G   +++E+F RM +    P + TF+A+L+ C+H  +   G   F
Sbjct: 276 SVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLGRWYF 335

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
             M + Y ++PQ+EHY C+VDLL RAG ++EA+  +++        +A +WGALL+A R 
Sbjct: 336 NIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMP---LKANAAIWGALLAASRT 392

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGC 406
           +G  ++G      L E+  ++   ++L  NI+ E   WD + +K+RK + E G++  PG 
Sbjct: 393 HGDADLGEEALVHLIELEPSNSGNYILLSNIFAEQERWD-DVSKLRKAMKERGLRNVPGA 451

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           S IEV+G+V EF + D  H    +I  V+
Sbjct: 452 SSIEVDGMVHEFTSRDGSHPFLHKICEVL 480



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 34/247 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q   P+ +V  +  M   G EP+      ++ AC  LG + + G +VH  VV+ 
Sbjct: 182 VIGGYAQMRRPEEAVEVFRRMQVEGIEPDGVALLSVLSACGDLGAV-DLGEWVHRFVVRR 240

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  ++  +++S+++ Y     +  A  +F+   ++ VVTWTT++ G+   G    A E+F
Sbjct: 241 GLRQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMF 300

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M   N                               M PN+   +++L+AC+H+G   
Sbjct: 301 RRMEREN-------------------------------MAPNDVTFLAILSACSHVGLTD 329

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
            G W  +    +Y ++  V     +VD+  + G +  A  + + +  K +A  W A+++ 
Sbjct: 330 LGRWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLKANAAIWGALLAA 389

Query: 239 VAMNGDA 245
              +GDA
Sbjct: 390 SRTHGDA 396


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 254/433 (58%), Gaps = 8/433 (1%)

Query: 7   QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP 66
           + N   +++  Y  +  +  +P+ +TFP ++K  V +  +  FG  +H  VV FGF    
Sbjct: 93  EPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVW-FGRQIHGQVVVFGFDSSV 151

Query: 67  FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-- 124
            VV+ L++ Y     +G AR +FD+   +DV  W  ++ GYGK+G+ + AR L E MP  
Sbjct: 152 HVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCW 211

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            RN VSW+ +++ Y++     E + +F++M    ++P+E  L++VL+ACA LG++  G  
Sbjct: 212 VRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGER 271

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           + SY     + + V L  AV+DMY+K G++  AL VFE ++ ++   W  +I+G+A +G 
Sbjct: 272 ICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGH 331

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
             ++L +F+RMVK+G +P + TF+A+L+ C+H   V  G  LF +M + YG+ P +EHY 
Sbjct: 332 GAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYG 391

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C++DLL RAG + EA++ I+         +A +WG+LL+A  ++  +E+G R   +L ++
Sbjct: 392 CMIDLLGRAGKLREADEVIKSMP---FKANAAIWGSLLAASNVHHDLELGERALSELIKL 448

Query: 365 GITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
              +   ++L  N+Y   G WD E+  +R ++   G+KK  G S IEV   V +F++GD 
Sbjct: 449 EPNNSGNYMLLANLYSNLGRWD-ESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDL 507

Query: 424 RHAQAGEIYRVIH 436
            H Q   I+ ++ 
Sbjct: 508 THPQVERIHEILQ 520



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 117/256 (45%), Gaps = 38/256 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY ++     ++  +  ML    EP+  T   ++ AC  LG LE  G  + ++V   
Sbjct: 221 VISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLE-LGERICSYVDHR 279

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + +++++ Y+    +  A  +F+   +R+VVTWTT++ G    G    A    
Sbjct: 280 GMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEA---- 335

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L++F +M + G++PN+   +++L+AC+H+G + 
Sbjct: 336 ---------------------------LAMFNRMVKAGVRPNDVTFIAILSACSHVGWVD 368

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
            G  + +S   +Y +  N+     ++D+  + G +  A  V + +  K +A  W ++++ 
Sbjct: 369 LGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAA 428

Query: 239 VAMNGDAKKSLELFDR 254
             ++ D    LEL +R
Sbjct: 429 SNVHHD----LELGER 440


>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
          Length = 613

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 247/446 (55%), Gaps = 44/446 (9%)

Query: 1   MIRGYMQANF-----PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           ++RGY+         P  ++  ++DM+D G EP++YTFP + KAC  LG L+  G  +  
Sbjct: 104 LMRGYVAGGGGGGRDPAAALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQE-GRQLQG 162

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           H+VK GF  D    +SL+ FY                               GK G+ + 
Sbjct: 163 HLVKLGFQRDEHSQNSLISFY-------------------------------GKCGEADL 191

Query: 116 ARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           AR  FE+M   E+   SWSA++AAY+R   + E +  F  M   G +P+ES +VS L+AC
Sbjct: 192 ARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSAC 251

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           AHLGA   G  +H    R     N  ++T++VDMY+KCG + +A +VF+ + +K+A  ++
Sbjct: 252 AHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYS 311

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AM+SG+A++GD +K+LE+FD MV+ G +P    +V VL  C+ A ++ +GL  F+ M   
Sbjct: 312 AMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLE 371

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIE 352
           + + P  +HY C+VDL+ARAG +++A   I    G +  G  +  W +LL+ACRI+G +E
Sbjct: 372 HKLTPNAQHYGCMVDLMARAGRLDDARALI----GNMPTGPTDTAWRSLLNACRIHGNLE 427

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           +  R  ++L  +G T+   +++  +++  A     A   R    + G+ + PG S +EV+
Sbjct: 428 LAERALQELERLGATNAGDYIILSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVH 487

Query: 413 GVVEEFLAGDNRHAQAGEIYRVIHSF 438
           G    F++ D  H +A +IY ++H  
Sbjct: 488 GATHRFVSQDRSHPRADDIYEMLHQM 513


>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
 gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
 gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 538

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 246/419 (58%), Gaps = 11/419 (2%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY-SLVHKMGTA 85
            PN++ +P ++K+   L    +  + VH H+ K GF     V ++LL  Y S V  +  A
Sbjct: 123 RPNHFIYPLVLKSTPYLSSAFSTPL-VHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+  +R+VV+WT M+ GY + GD  NA  LFE MPER+  SW+AI+AA ++   F 
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241

Query: 146 EVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           E +SLFR+M  E  ++PNE  +V VL+ACA  G +     +H++A R  L  +V ++ ++
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSL 301

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK---SGTQ 261
           VD+Y KCG++  A SVF+  S K   AWN+MI+  A++G +++++ +F+ M+K   +  +
Sbjct: 302 VDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIK 361

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   TF+ +L  CTH  +V  G   F+ M+  +G+EP++EHY C++DLL RAG  +EA +
Sbjct: 362 PDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALE 421

Query: 322 FIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
            +   KM      D  +WG+LL+AC+I+G +++     + L  +   +     +  N+Y 
Sbjct: 422 VMSTMKM----KADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYG 477

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           E G   EA + RK+I      K PG S IE++  V +F + D  H +  EIY ++ S +
Sbjct: 478 EMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSLI 536


>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
          Length = 489

 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 245/421 (58%), Gaps = 6/421 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGP-LENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  L+  C       E  G  +H +  K G      +V +++L  
Sbjct: 48  FSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGM 107

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS   ++  AR +FD   D++ VTW TM+DGY + G  +NA ++F+KMPER+ +SW+A++
Sbjct: 108 YSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMI 167

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E L+ FR+MQ  G+KP+   +++ L AC +LGA++ GLWVH Y      +
Sbjct: 168 NGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFK 227

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 228 NNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 287

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G +P   TF   LT C+H  +V +GL  F+ M   + + P++EHY C+VDL +RAG 
Sbjct: 288 QEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGR 347

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVL 374
           +EEA K ++         +  V G+LL+ACR +G   V   R+ + L+++ +   S +V+
Sbjct: 348 LEEALKVVQSMP---MKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDVNVKGHSNYVI 404

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
             N+Y   G    A+++R+ +   G+KK+PG S IE++     F+AGD+ H +  +I  V
Sbjct: 405 LSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETADIREV 464

Query: 435 I 435
           +
Sbjct: 465 L 465



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 37/232 (15%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL--WVH 186
           VSW++ +   +R     E    F  M+  G++PN    +++L+ C    + ++ L   +H
Sbjct: 26  VSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIALLSGCGDFSSGSEALGDLLH 85

Query: 187 SYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
            YA K  H   +V++ TA++ MYSK   V  A  VF+ + +K++  WN MI G   NG  
Sbjct: 86  GYACKLGHDRTHVMVGTAILGMYSKHSRVKKARLVFDYMEDKNSVTWNTMIDGYMRNGQV 145

Query: 246 KKSLELFDRMVK-------------------------------SGTQPTETTFVAVLTTC 274
             ++++FD+M +                               SG +P     +A L  C
Sbjct: 146 DNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNAC 205

Query: 275 THAKMVRDGLNLFEN-MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T+   +  GL +    MS  +    ++ +   ++DL  R G VE A +  ++
Sbjct: 206 TNLGALSFGLWVHRYVMSQDFKNNVKVSN--SLIDLYCRCGCVEFAREVFDK 255


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 252/436 (57%), Gaps = 13/436 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +A  P  +V+C+  ML  G EP+       + AC  L  LE FG  +H  V K 
Sbjct: 206 LIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLE-FGRLLHLLVGKK 264

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD-----KSPDRDVVTWTTMVDGYGKMGDFEN 115
                  +V +L++ Y+    +  A+A+FD     + P+     W  ++DGY K+G  + 
Sbjct: 265 RIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPE----PWNVIIDGYCKLGHVDI 320

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LF++M  R+ +++++++  Y      ++ L LF Q++  GM+ +   +VS+LTACA 
Sbjct: 321 ARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACAS 380

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+ QG  +H+  ++  +E++V L TA+VDMY KCG V  A +VF  +  +D   W+AM
Sbjct: 381 LGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAM 440

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G+A NG    +LE F +M + G QPT  T++AVLT C+H+ ++ +G   F  M +++ 
Sbjct: 441 IAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHK 500

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + PQ+EHY C++DLLAR+G+++EA   ++         +A +W ++LSACR++  I++  
Sbjct: 501 LHPQIEHYGCMIDLLARSGLLDEAMHLVQTMP---MQPNAVIWASILSACRVHKNIDLAR 557

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
                L ++   + + +V  YNIY ++   +EA ++R L+ E G+KK  G S I V G V
Sbjct: 558 HAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYSSITVAGQV 617

Query: 416 EEFLAGDNRHAQAGEI 431
            +F+  D  H    EI
Sbjct: 618 HKFVVNDQSHPWTLEI 633



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 142/309 (45%), Gaps = 37/309 (11%)

Query: 67  FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER 126
            V + L+  Y+ +     AR  FD+ P +D V W T++ G  + G  + AR L  + PER
Sbjct: 139 IVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPER 198

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           N VSW++++A YSR     + +  F  M   G++P+E  ++  L+AC+ L  +  G  +H
Sbjct: 199 NVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLH 258

Query: 187 SYAKRYHLEKNVILATAVVDMYSKC--------------------------------GHV 214
               +  ++    L   ++DMY+KC                                GHV
Sbjct: 259 LLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHV 318

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             A S+F+ +  +D   +N+MI+G   +G  + +L+LF ++ + G +    T V++LT C
Sbjct: 319 DIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTAC 378

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334
                +  G  L  ++     VE  +     +VD+  + G V+EA          +G  D
Sbjct: 379 ASLGALPQGRALHASIEQRI-VEEDVYLVTALVDMYMKCGRVDEATAVFHR----MGERD 433

Query: 335 ANVWGALLS 343
            + W A+++
Sbjct: 434 VHTWSAMIA 442


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 166/496 (33%), Positives = 261/496 (52%), Gaps = 71/496 (14%)

Query: 1   MIRGYM--QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I+ Y+  Q +   +++FC L + D  F P+++T P ++K C  LG L+  G  +H  V+
Sbjct: 86  LIKCYIENQRSNDAIALFCKL-LCD--FVPDSFTLPCVLKGCARLGALQE-GKQIHGLVL 141

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GFG D FV+SSL+  YS   ++   R +FD+  D+DVV+W +++DGY + G+ E A E
Sbjct: 142 KIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALE 201

Query: 119 LFEKMPE-------------------------------RNAVSWSAIMAAYSRISD---- 143
           +FE+MPE                               RN+VSW+A++  Y +  D    
Sbjct: 202 MFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTA 261

Query: 144 ---------------------------FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
                                      F + L LF  M    + PN + ++  ++A + +
Sbjct: 262 KELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGM 321

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            ++  G WVHSY  +   + + +L T +++MYSKCG V SAL VF  I  K  G W ++I
Sbjct: 322 VSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVI 381

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G+ M+G  +++LELFD M ++G +P   TF+ VL  C+HA    D    F+ M+  YG+
Sbjct: 382 VGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGI 441

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P +EHY C++D+L RAG +EEA+  IE         +  +W +LLS  R +G I +G  
Sbjct: 442 KPSIEHYGCLIDVLCRAGHLEEAKDTIERMP---IKANKVIWTSLLSGSRKHGNIRMGEY 498

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             + L ++       +V+  N+Y  AG   +  +VR+++ + GMKK PGCS IE  G + 
Sbjct: 499 AAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIH 558

Query: 417 EFLAGDNRHAQAGEIY 432
           EF+ GD  H Q  EIY
Sbjct: 559 EFIVGDKSHPQTEEIY 574



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 1/147 (0%)

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           ++ + + A  LF+ + E   VSW+ ++  Y       + ++LF ++      P+   L  
Sbjct: 61  RINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPC 119

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL  CA LGA+ +G  +H    +     +  + +++V MYSKCG +     VF+ + +KD
Sbjct: 120 VLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKD 179

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRM 255
             +WN++I G A  G+ + +LE+F+ M
Sbjct: 180 VVSWNSLIDGYARCGEIELALEMFEEM 206


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  286 bits (732), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/441 (35%), Positives = 239/441 (54%), Gaps = 37/441 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+  N    S++ +  M      P++ TFP ++KA   L      G  +H  V++ 
Sbjct: 60  MIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCD-TGVGKMIHGIVIQM 118

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF                                 DV T T +V  Y       +A +LF
Sbjct: 119 GF-------------------------------ICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPERNAV+W+A++  Y+    F + +  FR M   G +P+E  +V VL+AC+HLGA  
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H +     L  NV + TA++DMY+KCG V+    VFE I  K+   WN +ISG A
Sbjct: 208 QGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYA 267

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           MNG    +L+ F RM+    +P E TF+ VL  C H  +V +G   F +M   +G++P++
Sbjct: 268 MNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRI 327

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG++EEA + I+         D  +W ALL ACR++G  ++G  + ++
Sbjct: 328 EHYGCMVDLLGRAGLLEEALELIQSMS---IEPDPIIWRALLCACRVHGNTKLGEYIIKR 384

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +VL  NIY +E  W  E  K+R ++S  G++K PGCS IE+N VV EF+
Sbjct: 385 LIELEPNNGENYVLLSNIYSRERRW-AEVGKLRGMMSLRGIRKVPGCSSIEINNVVYEFV 443

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
           A ++R  +   IY+ + + +K
Sbjct: 444 ASNDRKPEFEAIYKQLDNLIK 464



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 13/277 (4%)

Query: 103 MVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
           ++D       FE+   +F K     N+   ++++  Y  ++     L +F  M +  + P
Sbjct: 28  LIDDSVSRNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILP 87

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           + S   +VL A A L     G  +H    +     +V  +TA+V +Y  C  +  A  +F
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           + +  ++A  WNA+I+G   N    K+++ F  M+  G QP+E T V VL+ C+H     
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 282 DGLNLFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
            G  + E    +Y    +L  +    ++D+ A+ G V E EK  EE    +   +   W 
Sbjct: 208 QGKWIHE---FIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEE----IREKNVYTWN 260

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            L+S   + G+   G+   +  + M + +F    +++
Sbjct: 261 VLISGYAMNGQ---GDAALQAFSRMLMENFKPDEVTF 294


>gi|357142551|ref|XP_003572610.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 454

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 153/362 (42%), Positives = 217/362 (59%), Gaps = 11/362 (3%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA  +K G      V +SLL+ Y  +  +  AR +FD     DV +W TMV GYGK GD 
Sbjct: 99  HAQALKCGALAHSVVTNSLLKLYCTLGLLPHARRVFDSGAALDVASWNTMVSGYGKSGDL 158

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             ARE+F +MP RN VSWSA++ A     +F E LS+F QM   G KP+   LVS+L AC
Sbjct: 159 AAAREVFGRMPGRNLVSWSAMIDALVHAEEFGEALSVFDQMMREGFKPDVVVLVSMLKAC 218

Query: 174 AHLGAITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
           AHLGA+ +G W H Y +       ++NV++ TA+VDMY KCG +  A  VF+G+  +D  
Sbjct: 219 AHLGAVKRGRWAHQYLETEGFAGRQRNVMVETALVDMYCKCGCMEEAWCVFDGVRYRDVV 278

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            WN+MI G+AMNG   ++LELF RM++ G  P ++TF   L  CTH   V +G  +F++M
Sbjct: 279 LWNSMIGGLAMNGHGDRALELFQRMLQEGFVPNQSTFAGALCACTHTGHVDEGREIFKSM 338

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSACRIYG 349
              +G+EPQ EHY C+ DLL RAG V EAE   ++  M       A+ WGAL+ +C+++ 
Sbjct: 339 WH-HGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPM----EPHASQWGALMLSCQMHN 393

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSV 408
            I VG RV ++L E+       + + +N+Y   G WD +A  +R+++ E G KK  G S+
Sbjct: 394 DITVGERVGKRLIELEPHHGGRYAILFNLYAVNGLWD-DARAIRQMMVEKGAKKDAGLSL 452

Query: 409 IE 410
           +E
Sbjct: 453 VE 454



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 101/249 (40%), Gaps = 38/249 (15%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG---EDPFVV 69
           LSVF    M+  GF+P+      ++KAC  LG ++  G + H ++   GF     +  V 
Sbjct: 193 LSVF--DQMMREGFKPDVVVLVSMLKACAHLGAVKR-GRWAHQYLETEGFAGRQRNVMVE 249

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++L++ Y     M  A  +FD    RDVV W +M+ G    G  + A ELF++M      
Sbjct: 250 TALVDMYCKCGCMEEAWCVFDGVRYRDVVLWNSMIGGLAMNGHGDRALELFQRM------ 303

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
                                   +QE G  PN+S     L AC H G + +G  +    
Sbjct: 304 ------------------------LQE-GFVPNQSTFAGALCACTHTGHVDEGREIFKSM 338

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKS 248
             + +E        + D+  + G V  A +V   +     A  W A++    M+ D    
Sbjct: 339 WHHGIEPQREHYGCLADLLGRAGRVGEAEAVLLDMPMEPHASQWGALMLSCQMHNDITVG 398

Query: 249 LELFDRMVK 257
             +  R+++
Sbjct: 399 ERVGKRLIE 407


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 152/416 (36%), Positives = 241/416 (57%), Gaps = 26/416 (6%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLV 79
           + +   +PN++TFP L KAC       ++G  +H HV+KF     D FV +SLL FY+  
Sbjct: 241 LTNKNLQPNSFTFPSLFKACCSNQSWFHYGPLLHTHVLKFLQPPFDNFVQASLLNFYAKY 300

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            KM  +R +FD+  + D+ TW  +++ Y +   + +    F+                  
Sbjct: 301 GKMCVSRYIFDRINEPDLATWNVILNAYARSSSYHSYSNSFDD----------------- 343

Query: 140 RISDFK-EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV 198
             +DF  E L LFR MQ +G++PNE  +V++++AC++LGA++QG WVH +  R  ++ N 
Sbjct: 344 --ADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQGFWVHCFVLRNKIKMNR 401

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
            + TA VDMYSKCG ++ A  VF+ +  +++D+  + AMI G A++G   ++LEL+ +M 
Sbjct: 402 FVGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKMK 461

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G  P   TFV  +  C+H  +V +GL +F++M  V+GVEP+LEHY C++DLL RAG +
Sbjct: 462 FKGLVPDSATFVVTMFACSHVGLVEEGLEIFKSMKEVHGVEPKLEHYGCLIDLLGRAGRL 521

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +EAE+++ +        +A +W +LL A RI+G + VG     KL E+       +VL  
Sbjct: 522 KEAEEWLADMP---MKPNAVLWRSLLGAARIHGNLGVGEVALTKLIELEPETSGNYVLLS 578

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           N+Y   G   +  +VRKL+   G+ K PG S++E+ G + EFL GD  H  + EIY
Sbjct: 579 NMYASVGRVNDVKRVRKLMKHHGVNKLPGFSLVEIKGAMHEFLTGDRSHPFSKEIY 634



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 105/241 (43%), Gaps = 36/241 (14%)

Query: 8   ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPF 67
           A+F   S++ + DM  +G  PN  T   LI AC  LG +   G +VH  V++     + F
Sbjct: 344 ADFSLESLYLFRDMQVIGIRPNEVTIVALISACSNLGAVSQ-GFWVHCFVLRNKIKMNRF 402

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           V ++ ++ YS    +  A  +FDK P  DRD   +T M+ G+   G    A EL+ KM  
Sbjct: 403 VGTAFVDMYSKCGCLNLACQVFDKMPENDRDSFCYTAMIGGFAVHGYGNQALELYRKM-- 460

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
                             FK            G+ P+ +  V  + AC+H+G + +GL +
Sbjct: 461 -----------------KFK------------GLVPDSATFVVTMFACSHVGLVEEGLEI 491

Query: 186 HSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNG 243
               K  H +E  +     ++D+  + G +  A      +  K +A  W +++    ++G
Sbjct: 492 FKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIHG 551

Query: 244 D 244
           +
Sbjct: 552 N 552


>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 250/435 (57%), Gaps = 9/435 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  +  P  S+  +L ML +G  P+  T+P L+KA   L   E  G+ VHAH++K 
Sbjct: 85  IIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQET-GVSVHAHIIKT 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ +SL+  Y+       A+ +FD    ++VV+W +M+DGY K G+   A++ F
Sbjct: 144 GHESDRFIQNSLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEMVMAQKAF 203

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M E++  SWS+++  Y +  ++ E +++F +MQ  G K NE  +VSV  ACAH+GA+ 
Sbjct: 204 ESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALE 263

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISG 238
           +G  ++ Y     L   ++L T++VDMY+KCG +  AL +F  +  S  D   WNA+I G
Sbjct: 264 KGRMIYKYIVDNGLPLTLVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGG 323

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G  ++SL+LF  M   G  P E T++ +L  C H  +V++    FE++S   G+ P
Sbjct: 324 LATHGLVEESLKLFKEMQIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLSKC-GMTP 382

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
             EHYAC+VD+LARAG +  A +FI +         A++ GALLS C  +  + +   V 
Sbjct: 383 TSEHYACMVDVLARAGQLTTAYQFICQMP---TEPTASMLGALLSGCINHRNLALAEIVG 439

Query: 359 RKLAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           RKL E+       ++   N+Y  +  WD +A  +R+ +   G+KK PG S +E++GV+  
Sbjct: 440 RKLIELEPNHDGRYIGLSNMYAVDKRWD-DARSMREAMERRGVKKSPGFSFVEISGVLHR 498

Query: 418 FLAGDNRHAQAGEIY 432
           F+A D  H  + E Y
Sbjct: 499 FIAHDKTHPDSEETY 513



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/323 (21%), Positives = 155/323 (47%), Gaps = 19/323 (5%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK--MGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HA V+  G  +D   +S +L F +L +   +  +  +F +     + +W T++ GY   
Sbjct: 33  LHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLSSPTIFSWNTIIRGYSNS 92

Query: 111 GDFENARELFEKMPE----RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN---E 163
            +   +  +F KM       + +++  ++ A +R+ + +  +S+   + + G + +   +
Sbjct: 93  KNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQ 152

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           + L+ +  AC +       +W          +KNV+   +++D Y+KCG +  A   FE 
Sbjct: 153 NSLIHMYAACGN------SMWAQKVFDSIQ-QKNVVSWNSMLDGYAKCGEMVMAQKAFES 205

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +S KD  +W+++I G    G+  +++ +F++M  +G +  E T V+V   C H   +  G
Sbjct: 206 MSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKG 265

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
             +++ +    G+   L     +VD+ A+ G +EEA   +  +       D  +W A++ 
Sbjct: 266 RMIYKYI-VDNGLPLTLVLQTSLVDMYAKCGAIEEA--LLIFRRVSKSQTDVLIWNAVIG 322

Query: 344 ACRIYGKIEVGNRVWRKLAEMGI 366
               +G +E   ++++++  +GI
Sbjct: 323 GLATHGLVEESLKLFKEMQIVGI 345


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 164/473 (34%), Positives = 255/473 (53%), Gaps = 49/473 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI  Y+       ++ C+  +L +    P+ YTFPP++KAC   G L + G  +H    K
Sbjct: 88  MISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD-GRKIHCWAFK 143

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDG------------- 106
            GF  + FV +SL+  YS     G AR+LFD  P RD+ +W  M+ G             
Sbjct: 144 LGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 203

Query: 107 --------------------------YGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                     Y K+G  ++A ++FE +P ++ +SW+ ++  Y++
Sbjct: 204 LDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQ 263

Query: 141 ISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
                E + +++ M+E   + PN+   VS+L A AH+GA+ QG+ +H    + +L  +V 
Sbjct: 264 NGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVF 323

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           +AT ++D+Y KCG +  A+S+F  +  + +  WNA+IS   ++G A+K+L+LF  M+  G
Sbjct: 324 VATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEG 383

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P   TFV++L+ C+H+  V +G   F  M   YG++P L+HY C+VDLL RAG +E A
Sbjct: 384 VKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMA 442

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
             FI++        DA++WGALL ACRI+G IE+G     +L E+   +   +VL  NIY
Sbjct: 443 YDFIKDMP---LQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIY 499

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              G     +KVR L  E G+KK PG S IEVN  V+ F  G+  H +  EIY
Sbjct: 500 ANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIY 552



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 137/265 (51%), Gaps = 18/265 (6%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-M 159
           T +V+ Y  +GD   +R  F+++P+++  +W+++++AY     F E +  F Q+  V  +
Sbjct: 55  TRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEI 114

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
           +P+      VL AC   G +  G  +H +A +   + NV +A +++ MYS+ G    A S
Sbjct: 115 RPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARS 171

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT--HA 277
           +F+ +  +D G+WNAMISG+  NG+A ++L++ D M   G +    T V++L      +A
Sbjct: 172 LFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYA 231

Query: 278 KMVRDGLNLFENMSAVYGVEP--QLEHYACVVDLLARAGMVEEA---EKFIEEKMGGLGG 332
           K     L L ++   V+ + P   +  +  ++   A+ G+  EA    K +EE    +  
Sbjct: 232 K-----LGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEII-- 284

Query: 333 GDANVWGALLSACRIYGKIEVGNRV 357
            +   W ++L A    G ++ G ++
Sbjct: 285 PNQGTWVSILPAYAHVGALQQGMKI 309



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR- 254
           +++ ++T +V++Y+  G V  +   F+ I  KD  AWN+MIS    NG   +++  F + 
Sbjct: 49  QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL 108

Query: 255 MVKSGTQPTETTFVAVLTTC 274
           ++ S  +P   TF  VL  C
Sbjct: 109 LLVSEIRPDFYTFPPVLKAC 128


>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
 gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
          Length = 530

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/422 (35%), Positives = 243/422 (57%), Gaps = 11/422 (2%)

Query: 18  YLDMLDMGFE-PNNYTFPPLIKAC--VILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLE 74
           +L ML  G   PN + +P +++A   V +G +++    +H+H  K GF     + +S+L+
Sbjct: 107 FLRMLRHGRPAPNQFVYPLVLRAASGVGVGIVKS----IHSHACKSGFCGHDIIRTSVLD 162

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            YS    M  AR LFD   +R+VV+WT +V GY + G   +A  LFE+MPER+  +W+AI
Sbjct: 163 GYSRHGMMADARKLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAI 222

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           +A  S+   F E + +F +M   G +PN + +  VL+AC HLG +  G  +H YA R  +
Sbjct: 223 IAGCSQNGLFVEAVGIFGRMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCV 282

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
                +   ++DMY KCG++  A  +F+ +S++    WN++I+ +A++G +K ++ +F+ 
Sbjct: 283 GFGSSVLNGLIDMYGKCGNLEGARWIFDEVSDRSLTTWNSLINCLALHGHSKCAISVFNE 342

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           M   G +P   TFV +L  CTH   V +G+  FE M   +G+EP++EHY C++DLL RAG
Sbjct: 343 MRGEGVEPDVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAG 402

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
             ++A   I +        D  +WG+LL+ACR++ ++E      RKL E+   + +  V+
Sbjct: 403 RFQDALNVISDMR---IEADEVMWGSLLNACRVHRQVEFAELAIRKLLELDPNNANYVVM 459

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
             N+Y E G   E  KVRK + E  + KK PGCS IEV+     F +GD+ H ++  IY 
Sbjct: 460 LANVYSEGGLWEEVRKVRKFVKEENIGKKLPGCSWIEVDRKTHRFYSGDDAHPESENIYD 519

Query: 434 VI 435
            +
Sbjct: 520 TL 521



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 150/359 (41%), Gaps = 58/359 (16%)

Query: 116 ARELFEKMPERNAVSWSAIM-----------AAYSRISDFKEVLSLFRQMQEVGMK-PNE 163
           AR LF+  P  +   +SAI+           +     +  ++ L+LF +M   G   PN+
Sbjct: 61  ARHLFDATPHPSVFLYSAILSAYVSAAATASSYAHAHAHARDALALFLRMLRHGRPAPNQ 120

Query: 164 SGLVSVLTACAHLG----------AITQGLWVHSYAKRYHL------------------- 194
                VL A + +G          A   G   H   +   L                   
Sbjct: 121 FVYPLVLRAASGVGVGIVKSIHSHACKSGFCGHDIIRTSVLDGYSRHGMMADARKLFDGL 180

Query: 195 -EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            E+NV+  TA+V  Y++ G V  A+ +FE +  +D  AWNA+I+G + NG   +++ +F 
Sbjct: 181 TERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVEAVGIFG 240

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLA 311
           RMV +G +P  TT   VL+ C H  M++ G  ++ +   + V      L     ++D+  
Sbjct: 241 RMVGAGFRPNATTVSCVLSACGHLGMLKIGKLIHCYAWRTCVGFGSSVLNG---LIDMYG 297

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFS 370
           + G +E A    +E    +       W +L++   ++G  +    V+ ++   G+  D  
Sbjct: 298 KCGNLEGARWIFDE----VSDRSLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEPDVV 353

Query: 371 THVLSYNIYKEAGWDMEANKVRKLIS-ETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
           T V   N     G+  E  +  +L+  E G++ +     IE  G + + L    R   A
Sbjct: 354 TFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPE-----IEHYGCIIDLLGRAGRFQDA 407


>gi|359485621|ref|XP_003633297.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g10330-like [Vitis
           vinifera]
          Length = 454

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 164/422 (38%), Positives = 238/422 (56%), Gaps = 14/422 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           +IRGY+    P  ++  +  ML     PNN TFP +IK      P   F  G  +H HV+
Sbjct: 35  LIRGYLNFVEPHKTLLIFTHMLAHQARPNNLTFPSIIKKAASCLPSLAFMIGTPLHTHVI 94

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D F+ +SL+  Y+ + K+  A  +F++     VV+   M+D  GK GD  +A  
Sbjct: 95  KRGLWHDLFIQTSLVVLYARLCKVSDACPVFEEISRPCVVSSNAMLDALGKNGDMGSALX 154

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM------QEVGMKPNESGLVSVLTA 172
           LFE MPER+ VSW++I+  + R   F+E +  F +M      +   +KPNE+  VSVL++
Sbjct: 155 LFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNEATFVSVLSS 214

Query: 173 CAHL---GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           C +L   GA+ QG  +H Y  R  +E  V + TA++ +Y K G + + + +F G+  K  
Sbjct: 215 CTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENVMKIFNGMVVKGV 274

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
             WNAMIS +A NG  K++L+LF++M   G  P E TFVAV+T C  +K V  GL  F++
Sbjct: 275 CTWNAMISSLACNGREKQALDLFEKMKMKGLCPDEVTFVAVITACARSKFVVLGLGFFQS 334

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   +GV P++ HY CVVDLL RAG++EEA +FI+         DA V GALL AC+++G
Sbjct: 335 MRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEFIKSMP---FEPDATVLGALLGACKVHG 391

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
            IE+GN V R+L E        +V   NIY        A   RK ++E G+ K P  S+I
Sbjct: 392 AIELGNEVGRRLLEFQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGISKIPAYSMI 451

Query: 410 EV 411
           +V
Sbjct: 452 DV 453


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 254/450 (56%), Gaps = 41/450 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GYM+ + P  ++  Y  M + GF P+  T   L+ AC  L  L   GM +H+H+ + 
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDL-GVGMKLHSHIREM 209

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                            +   +G+A                 +V+ Y K GD + AR++F
Sbjct: 210 DM--------------KICAVLGSA-----------------LVNMYAKCGDLKTARQVF 238

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACAHLGAI 179
           +K+ +++  +WSA++  Y + +   E L LFR++     M+PNE  +++V++ACA LG +
Sbjct: 239 DKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDL 298

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WVH Y  R     +V L  +++DM+SKCG + +A  +F+ +S KD  +WN+M++G 
Sbjct: 299 ETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGF 358

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G  +++L  F  M  +  QP E TF+ VLT C+HA +V++G  LF  + A+YGV  +
Sbjct: 359 ALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLK 418

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHY C+VDLL RAG++ EA +FI  ++  L   D  +WG++L ACR+Y  +E+G    R
Sbjct: 419 SEHYGCMVDLLCRAGLLAEAREFI--RVMPL-QPDGAIWGSMLGACRVYNNLELGEEAAR 475

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L ++  T+   ++L  NIY K   W+ E  KVR+L++E G++K PGCS + ++ +   F
Sbjct: 476 FLLKLEPTNDGVYILLSNIYAKRKMWN-EVKKVRELMNEKGIQKTPGCSSVVIDNIAHSF 534

Query: 419 LAGDNRHAQAGEI---YRVIHSFLKMSNLV 445
           LAGD  H +  EI    R +   LK++  V
Sbjct: 535 LAGDCSHPEIAEISIMLRQVREKLKLAGYV 564



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 191/383 (49%), Gaps = 52/383 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M+R ++ +N P+ ++  Y +ML+     P+ +TFP L+K C +L   +  G  +H  VVK
Sbjct: 49  MLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFK-VGKVLHGQVVK 107

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           +    D ++                                TT+++ Y   GD ++AR L
Sbjct: 108 YMLHSDLYIE-------------------------------TTLLNMYAACGDLKSARFL 136

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+M  RN V W+++++ Y +     E L L+++M+E G  P+E  + ++++ACA L  +
Sbjct: 137 FERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDL 196

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +HS+ +   ++   +L +A+V+MY+KCG + +A  VF+ +S+KD  AW+A+I G 
Sbjct: 197 GVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGY 256

Query: 240 AMNGDAKKSLELFDRMVKSGT--QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             N  + ++L+LF R V  G+  +P E T +AV++ C     +  G  + +     Y   
Sbjct: 257 VKNNRSTEALQLF-REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHD-----YITR 310

Query: 298 PQLEHYA----CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            Q  H       ++D+ ++ G ++ A++  +     +   D   W ++++   ++G   +
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFD----SMSYKDLISWNSMVNGFALHG---L 363

Query: 354 GNRVWRKLAEMGITDFSTHVLSY 376
           G     +   M  TD     +++
Sbjct: 364 GREALAQFRLMQTTDLQPDEITF 386



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 20/235 (8%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACA 174
           A  +F    E + ++W++++ A+   +  +  L  + +M E     P+     S+L  CA
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            L     G  +H    +Y L  ++ + T +++MY+ CG + SA  +FE + +++   W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN----- 289
           MISG   N    ++L L+ +M + G  P E T   +++ C   K +  G+ L  +     
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 290 --MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
             + AV G        + +V++ A+ G ++ A +  ++    L   D   W AL+
Sbjct: 211 MKICAVLG--------SALVNMYAKCGDLKTARQVFDK----LSDKDVYAWSALI 253


>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
 gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 241/413 (58%), Gaps = 7/413 (1%)

Query: 26  FEPNNYTFPPLIKACVILGPLEN-FGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKMG 83
            +PN+ TF  L+  C  L    N  G  +HA+  K G      +V ++L++ Y+    + 
Sbjct: 6   IDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVE 65

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
            +R  FD+   ++  +W TM+DG+ + G    A E+F++MPER  +SW+ ++  + ++  
Sbjct: 66  LSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGL 125

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           F+E L  FR+MQ   ++P+   +V+VL+ACA+LGA+  GLWVH YA +  L  NV +  +
Sbjct: 126 FEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNS 185

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++D+YS+CG +  A  VFE +  +   +WN++I G+A NG  +++LE FD M K G +P 
Sbjct: 186 LIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPN 245

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + +F   LT C+H  +V +GL  F+ M  V+ + P++EHY C+VDL +RAG +E+A   +
Sbjct: 246 DVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVV 305

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +         +  V G+LL+ACR  G +E+  R+   L  +     S +VL  NIY   G
Sbjct: 306 QNMP---MKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNYVLLSNIYAAVG 362

Query: 384 -WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            WD  A K R  +   G++KKPG S IE+   + EF+AGD  H +A +IY ++
Sbjct: 363 RWD-GACKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIYSML 414



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 117/258 (45%), Gaps = 34/258 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+++    + ++  +  M     EP+  T   ++ AC  LG L   G++VH + +K 
Sbjct: 116 LINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGAL-GLGLWVHRYALKK 174

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  ++  + +SL++ YS    +  AR +F+K  +R +V+W +++ G    G  E A E F
Sbjct: 175 GLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHF 234

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +                                MQ+ G KPN+      LTAC+H G + 
Sbjct: 235 D-------------------------------LMQKQGFKPNDVSFTGALTACSHTGLVD 263

Query: 181 QGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
           +GL      +R H +   +     +VD+YS+ G +  A+SV + +  K +     ++++ 
Sbjct: 264 EGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAA 323

Query: 239 VAMNGDAKKSLELFDRMV 256
               GD + +  L + +V
Sbjct: 324 CRTRGDVELAERLMNYLV 341


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 245/432 (56%), Gaps = 36/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GYM+ + P  ++  Y  M + GF P+  T   L+ AC  L  L   GM +H+H+ + 
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDL-GVGMKLHSHIREM 209

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                            +   +G+A                 +V+ Y K GD + AR++F
Sbjct: 210 DM--------------KICAVLGSA-----------------LVNMYAKCGDLKTARQVF 238

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACAHLGAI 179
           +++ +++  +WSA++  Y + +   E L LFR++     M+PNE  +++V++ACA LG +
Sbjct: 239 DQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDL 298

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WVH Y  R     +V L  +++DM+SKCG + +A  +F+ +S KD  +WN+M++G+
Sbjct: 299 ETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGL 358

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G  +++L  F  M  +  QP E TF+ VLT C+HA +V++G  LF  + A+YGV  +
Sbjct: 359 ALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLK 418

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHY C+VDLL RAG++ EA +FI  ++  L   D  +WG++L ACR+Y  +E+G    R
Sbjct: 419 SEHYGCMVDLLCRAGLLAEAREFI--RVMPL-QPDGAIWGSMLGACRVYNNLELGEEAAR 475

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L E+  T+   ++L  NIY       E  KVR+L++E G++K PGCS + ++ +   FL
Sbjct: 476 CLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFL 535

Query: 420 AGDNRHAQAGEI 431
           AGD  H +  EI
Sbjct: 536 AGDCSHPEIAEI 547



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 191/383 (49%), Gaps = 52/383 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M+R ++ +N P+ ++  Y +ML+     P+ +TFP L+K C +L   +  G  +H  VVK
Sbjct: 49  MLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFK-VGKVLHGQVVK 107

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           +    D ++                                TT+++ Y   GD ++AR L
Sbjct: 108 YMLHSDLYIE-------------------------------TTLLNMYAACGDLKSARFL 136

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+M  RN V W+++++ Y +     E L L+++M+E G  P+E  + ++++ACA L  +
Sbjct: 137 FERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDL 196

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +HS+ +   ++   +L +A+V+MY+KCG + +A  VF+ +S+KD  AW+A+I G 
Sbjct: 197 GVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGY 256

Query: 240 AMNGDAKKSLELFDRMVKSGT--QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             N  + ++L+LF R V  G+  +P E T +AV++ C     +  G  + +     Y   
Sbjct: 257 VKNNRSTEALQLF-REVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHD-----YITR 310

Query: 298 PQLEHYA----CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            Q  H       ++D+ ++ G ++ A++  +     +   D   W ++++   ++G   +
Sbjct: 311 TQKGHSVSLNNSLIDMFSKCGDIDAAKRIFD----SMSYKDLISWNSMVNGLALHG---L 363

Query: 354 GNRVWRKLAEMGITDFSTHVLSY 376
           G     +   M  TD     +++
Sbjct: 364 GREALAQFHLMQTTDLQPDEITF 386



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 20/224 (8%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAITQGLWV 185
           + ++W++++ A+   +  +  L  + +M E     P+     S+L  CA L     G  +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
           H    +Y L  ++ + T +++MY+ CG + SA  +FE + +++   W +MISG   N   
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN-------MSAVYGVEP 298
            ++L L+ +M + G  P E T   +++ C   K +  G+ L  +       + AV G   
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG--- 218

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
                + +V++ A+ G ++ A +  ++    L   D   W AL+
Sbjct: 219 -----SALVNMYAKCGDLKTARQVFDQ----LSDKDVYAWSALI 253


>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
          Length = 494

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/427 (34%), Positives = 246/427 (57%), Gaps = 9/427 (2%)

Query: 25  GFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKM 82
           G EPN+ TF  L+  C  +    E  G  +H +  K G      +V +++L  YS   + 
Sbjct: 60  GVEPNHITFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRF 119

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           G AR +FD   D++ VTW TM+DGY + G   NA +LF++MPER+ +SW+A++  + +  
Sbjct: 120 GKARLVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKG 179

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             +E L+ FR+MQ  G+KP+   +++ L AC HLGA++ GLWVH Y      + N+ ++ 
Sbjct: 180 FHEEALAWFREMQISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSN 239

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M + G +P
Sbjct: 240 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 299

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
              TF   LT C+H  +V +GL  F+ M   + + P++EHY C+VDL +RAG +E+A   
Sbjct: 300 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNV 359

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVLSYNIYKE 381
           ++         +  V G+LL+ACR +G   V   R+ + L+++ +   S +V+  N+Y  
Sbjct: 360 VQSMP---MKPNEVVIGSLLAACRNHGNNTVLAERLVKHLSDLNVKSHSNYVILSNMYAA 416

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG---EIYRVIHSF 438
            G    A+K+R+ +   G+KK+PG S +E++     F+AGD+ H +     E+  +I S 
Sbjct: 417 DGIWEGASKMRRKMKGLGLKKQPGFSSVEIDDCTHVFMAGDSAHVETAYIREVLELISSD 476

Query: 439 LKMSNLV 445
           L++   V
Sbjct: 477 LRLQGCV 483



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 102/232 (43%), Gaps = 35/232 (15%)

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL--WV 185
            VSW++ +   SR     E    F  M+  G++PN    +++L+ C  + + ++ L   +
Sbjct: 30  TVSWTSRITLLSRNGRLAEAAKEFSSMRLAGVEPNHITFIALLSGCGDVSSGSEALGDLL 89

Query: 186 HSYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           H YA +  L++ +V++ TA++ MYSK G    A  VF+ + +K++  WN MI G   +G 
Sbjct: 90  HGYACKLGLDRTHVMVGTAILGMYSKRGRFGKARLVFDFMEDKNSVTWNTMIDGYMRSGQ 149

Query: 245 AKKSLELFDRMVK-------------------------------SGTQPTETTFVAVLTT 273
              +++LFD M +                               SG +P     +A L  
Sbjct: 150 VNNAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAA 209

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           CTH   +  GL +   +      +  +     ++DL  R G VE A +  ++
Sbjct: 210 CTHLGALSFGLWVHRYVMN-QDFKNNIRVSNSLIDLYCRCGCVEFAREVFDK 260


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 236/420 (56%), Gaps = 32/420 (7%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML     PN +TFP L+KAC  L    + G+  HA  +KFGF  D +V ++L+  YS   
Sbjct: 117 MLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCF- 175

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                    G G +GD   AR +F++MP+ +AV+WSA++  Y R
Sbjct: 176 -------------------------GGGFLGD---ARNVFDRMPKESAVTWSAMIGGYVR 207

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
                + + LFR+MQ  G++ +E  ++ VL A   LGA+    WV  + +R  + K+V L
Sbjct: 208 GGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTL 267

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             A++D  +KCG V  A++VFEG+  +   +W ++I  +AM G  K+++ +F+ M  +G 
Sbjct: 268 CNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGV 327

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P +  F+ VLT C+HA MV +G   F+ M   YG+EP++EHY C+VD+  RAGMVE A 
Sbjct: 328 PPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAM 387

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           +F+          +  +W +L+SACR +G++E+G  + R L        + +++  N++ 
Sbjct: 388 EFVRTMP---IQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFA 444

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
                 E +++R+ +S+ G+KK PGCS++E++G V EF+AGD  H Q  +IYR++    +
Sbjct: 445 LTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMAR 504


>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
 gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
           DEFECTIVE 247; Flags: Precursor
 gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
           thaliana gb|AC007109.6, and contains two DUF17 PF|01535
           domains [Arabidopsis thaliana]
 gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
          Length = 500

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 248/434 (57%), Gaps = 9/434 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  L+  C       E  G  +H +  K G   +  +V ++++  
Sbjct: 59  FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS   +   AR +FD   D++ VTW TM+DGY + G  +NA ++F+KMPER+ +SW+A++
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E L  FR+MQ  G+KP+   +++ L AC +LGA++ GLWVH Y      +
Sbjct: 179 NGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFK 238

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF  +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 239 NNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 298

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G +P   TF   LT C+H  +V +GL  F+ M   Y + P++EHY C+VDL +RAG 
Sbjct: 299 QEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGR 358

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDFSTHVL 374
           +E+A K ++         +  V G+LL+AC  +G  I +  R+ + L ++ +   S +V+
Sbjct: 359 LEDALKLVQSMP---MKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVI 415

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG---EI 431
             N+Y   G    A+K+R+ +   G+KK+PG S IE++  +  F+AGDN H +     E+
Sbjct: 416 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREV 475

Query: 432 YRVIHSFLKMSNLV 445
             +I S L++   V
Sbjct: 476 LELISSDLRLQGCV 489



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 35/228 (15%)

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL--GAITQGLWV 185
            VSW++ +   +R     E    F  M   G++PN    +++L+ C     G+   G  +
Sbjct: 36  TVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLL 95

Query: 186 HSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           H YA +  L++N V++ TA++ MYSK G    A  VF+ + +K++  WN MI G   +G 
Sbjct: 96  HGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQ 155

Query: 245 AKKSLELFDRMVK-------------------------------SGTQPTETTFVAVLTT 273
              + ++FD+M +                               SG +P     +A L  
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           CT+   +  GL +   + +    +  +     ++DL  R G VE A +
Sbjct: 216 CTNLGALSFGLWVHRYVLS-QDFKNNVRVSNSLIDLYCRCGCVEFARQ 262


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 141/410 (34%), Positives = 245/410 (59%), Gaps = 4/410 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N  K  +  +  M     + +  T   +I AC  LG        V  ++ + 
Sbjct: 482 LIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVR-YIERN 540

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D ++ ++L+++Y  + ++ +A  +F +  D++ VT   M+  Y K G+  +A+++F
Sbjct: 541 HIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIF 600

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ +SWS+++ AYS+ S F + L LFRQMQ   +KP+   + SVL+ACAHLGA+ 
Sbjct: 601 DQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALD 660

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H Y +R +++ + I+  +++DM++KCG +  AL VF  +  KD  +WN++I G+A
Sbjct: 661 LGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLA 720

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG   ++L +F  M+  G +P E TF+ VL  C + ++V++GL+ FE M  V+ +EPQ+
Sbjct: 721 NNGFEDEALNIFYSMLTEGPRPNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQM 780

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY CVV +L+RAG +E+A+ FI E        D  VW  LL AC+ +G + V     +K
Sbjct: 781 KHYGCVVGILSRAGQLEKAKNFINEMP---LAPDPVVWRILLGACKTHGNVAVAEVATKK 837

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           L+E+  ++   ++L  NIY  A    +A  VR+ +++T ++K P CSV++
Sbjct: 838 LSELDPSNSGDYMLLSNIYASADRWSDALNVRQWMADTAVRKSPACSVVD 887



 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 105/318 (33%), Positives = 190/318 (59%), Gaps = 4/318 (1%)

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           P ++VV+W  ++ G+   G+ E AR LF++MP RN VSW+ ++  Y+R   + E ++LFR
Sbjct: 2   PMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFR 61

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
            M   G+ P+E  +++V+ A ++LG I  G  +H Y  +  +  +  +  +++D+Y+K G
Sbjct: 62  HMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIG 121

Query: 213 HVHSALSVF-EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
            V ++L VF E +  ++  +W ++ISG AM+G + ++LELF  M ++G +P   TF++V+
Sbjct: 122 SVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVI 181

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
             C+H  +V  GL  F++M   Y ++P+++H+ C++D+L RAG + EAE+ IE   G   
Sbjct: 182 NACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIE---GLPV 238

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391
             +  VW  LL  C  YG++E+G R  + ++++         +  N+  E G   +A + 
Sbjct: 239 EVNVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQA 298

Query: 392 RKLISETGMKKKPGCSVI 409
           RKL+ E  + K PG +++
Sbjct: 299 RKLLDERKIVKVPGLALV 316



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 162/357 (45%), Gaps = 66/357 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVK 59
           ++RG  Q++ PK ++  Y    + G +P+N TFP ++KAC     P E  G  +H+HV+K
Sbjct: 381 LLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKE--GEQMHSHVIK 438

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  D FV +SL+  Y+    +  AR++FD+   +DVV+W +++ GY            
Sbjct: 439 LGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYS----------- 487

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                +RN                FKEVL+LF  MQ   ++ ++  +V V++AC HLG  
Sbjct: 488 -----QRNR---------------FKEVLALFELMQAEEVQADKVTMVKVISACTHLGDW 527

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV------------------- 220
           +    +  Y +R H+E +V L   ++D Y + G + SA  V                   
Sbjct: 528 SMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAY 587

Query: 221 ------------FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                       F+ I NKD  +W++MI   +       SLELF +M ++  +P      
Sbjct: 588 AKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIA 647

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           +VL+ C H   +  G     +      ++        ++D+ A+ G ++EA +   E
Sbjct: 648 SVLSACAHLGALDLG-KWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQEALQVFTE 703



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 87/168 (51%)

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           +  D   A ++FE++       W+ ++   ++    K+ +  +++ QE GMKP+      
Sbjct: 356 QQSDLVFAHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPF 415

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL ACA   A  +G  +HS+  +     ++ ++ +++ +Y+ CG +  A S+F+ +  KD
Sbjct: 416 VLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKD 475

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
             +WN++I G +     K+ L LF+ M     Q  + T V V++ CTH
Sbjct: 476 VVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTH 523



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/291 (19%), Positives = 115/291 (39%), Gaps = 14/291 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+        ++  + +M   G  PN  TF  +I AC   G +E    F  + V ++
Sbjct: 145 IISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEY 204

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTWTTMVDGYGKMGDFENAREL 119
               +      +++      ++  A  + +  P + +V+ W  ++    K G+ E  +  
Sbjct: 205 NIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRA 264

Query: 120 FEKMPERNAVS------WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
            + + +    S       S ++    R SD ++   L  + + V +     GL  V+T  
Sbjct: 265 IKMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKV----PGLALVVTRS 320

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS-KCGHVHSALSVFEGISNKDAGAW 232
             +    + L  H      H  +  +  + V+  Y+ +   +  A  VFE I +     W
Sbjct: 321 FVMMEAVKKLHAHLVVSGLHNCQYAM--SKVIRSYALQQSDLVFAHKVFEQIESPTTFLW 378

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           N ++ G+A +   K ++  + +  + G +P   TF  VL  C      ++G
Sbjct: 379 NTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEG 429


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 236/420 (56%), Gaps = 32/420 (7%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML     PN +TFP L+KAC  L    + G+  HA  +KFGF  D +V ++L+  YS   
Sbjct: 117 MLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCF- 175

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                    G G +GD   AR +F++MP+ +AV+WSA++  Y R
Sbjct: 176 -------------------------GGGFLGD---ARNVFDRMPKESAVTWSAMIGGYVR 207

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
                + + LFR+MQ  G++ +E  ++ VL A   LGA+    WV  + +R  + K+V L
Sbjct: 208 GGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIGKSVTL 267

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             A++D  +KCG V  A++VFEG+  +   +W ++I  +AM G  K+++ +F+ M  +G 
Sbjct: 268 CNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGV 327

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P +  F+ VLT C+HA MV +G   F+ M   YG+EP++EHY C+VD+  RAGMVE A 
Sbjct: 328 PPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAM 387

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           +F+          +  +W +L+SACR +G++E+G  + R L        + +++  N++ 
Sbjct: 388 EFVRTMP---IQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNVFA 444

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
                 E +++R+ +S+ G+KK PGCS++E++G V EF+AGD  H Q  +IYR++    +
Sbjct: 445 LTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEMAR 504


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 158/437 (36%), Positives = 235/437 (53%), Gaps = 36/437 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+   + ++  + +M      PN  T   ++ AC   G     G +V + +   
Sbjct: 231 MISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDR 290

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G +  +V+ L                               +D Y K GD E A  LF
Sbjct: 291 GLGSNIRLVNGL-------------------------------IDMYVKCGDLEEASNLF 319

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           EK+ ++N VSW+ ++  Y+ +S +KE L LFR+M +  + PN+   +S+L ACA+LGA+ 
Sbjct: 320 EKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALD 379

Query: 181 QGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G WVH+Y  +    ++  V L T+++DMY+KCG +  A  +F+ ++ K    WNAMISG
Sbjct: 380 LGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISG 439

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G    +L LF RM   G  P + TFV VLT C HA ++  G   F +M   Y V P
Sbjct: 440 FAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSP 499

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +L HY C++DL  RAG+ +EAE  ++       G    +W +LL ACRI+ +IE+   V 
Sbjct: 500 KLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGA---IWCSLLGACRIHRRIELAESVA 556

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           + L E+   + S +VL  NIY  AG   +  K+R  +++  MKK PGCS IEV+ VV EF
Sbjct: 557 KHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEF 616

Query: 419 LAGDNRHAQAGEIYRVI 435
           L GD  H Q+ EIY+++
Sbjct: 617 LVGDKVHPQSNEIYKML 633



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/390 (32%), Positives = 213/390 (54%), Gaps = 16/390 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVK 59
           MIRG   +  P L++  Y+ M+  G EPN YTFP + K+C  I G  E  G  VHAHV+K
Sbjct: 99  MIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHE--GKQVHAHVLK 156

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   + FV +SL+  Y+   ++  AR +FDKS  RD V++T ++ GY   G  + AREL
Sbjct: 157 LGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEAREL 216

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+++P R+ VSW+A+++ Y++    +E ++ F +M+   + PN S ++SVL+ACA  G+ 
Sbjct: 217 FDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSS 276

Query: 180 TQ-GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            Q G WV S+ +   L  N+ L   ++DMY KCG +  A ++FE I +K+  +WN MI G
Sbjct: 277 LQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGG 336

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG----LNLFENMSAVY 294
                  K++L LF RM++S   P + TF+++L  C +   +  G      + +NM +  
Sbjct: 337 YTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKS-- 394

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            ++  +  +  ++D+ A+ G +  A++  +     +       W A++S   ++G  +  
Sbjct: 395 -MKNTVALWTSLIDMYAKCGDLAVAKRIFD----CMNTKSLATWNAMISGFAMHGHTDTA 449

Query: 355 NRVWRKLAEMG-ITDFSTHVLSYNIYKEAG 383
             ++ ++   G + D  T V      K AG
Sbjct: 450 LGLFSRMTSEGFVPDDITFVGVLTACKHAG 479



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 129/321 (40%), Gaps = 64/321 (19%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L+  C  L  L+     +H+ ++K G     F +S L+EF ++             SP  
Sbjct: 34  LLSNCKTLQTLKQ----IHSQIIKTGLHNTHFALSKLIEFCAV-------------SPH- 75

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
                          GD   A  LF+ +   N V W+ ++   S        L  +  M 
Sbjct: 76  ---------------GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMI 120

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G +PNE    S+  +C  +    +G  VH++  +  LE N  + T++++MY++ G + 
Sbjct: 121 SSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELV 180

Query: 216 SALSVFEGISNKDA-------------------------------GAWNAMISGVAMNGD 244
           +A  VF+  S +DA                                +WNAMISG A +G 
Sbjct: 181 NARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGR 240

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            ++++  F+ M ++   P  +T ++VL+ C  +       N   +     G+   +    
Sbjct: 241 VEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVN 300

Query: 305 CVVDLLARAGMVEEAEKFIEE 325
            ++D+  + G +EEA    E+
Sbjct: 301 GLIDMYVKCGDLEEASNLFEK 321


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 250/434 (57%), Gaps = 7/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y ++ F   ++  Y ++  +G   N Y+F  L+  CV +  LE      H  V+  
Sbjct: 154 MVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELE-LSKQAHGQVLVA 212

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  + SS+L+ Y+   +MG AR LFD+   RDV+ WTTMV GY + GD E ARELF
Sbjct: 213 GFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELF 272

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE+N V+W++++A Y+R     + L LF +M  + ++P++    S L A A + ++ 
Sbjct: 273 DLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLN 332

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGV 239
            G  +H Y  R ++  N I+ ++++DMYSKCG +     VF+ + +K D   WN +IS +
Sbjct: 333 HGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSL 392

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G  ++++++FD MV+ G +P   T + +L  C+H+ +V++GL L+E++++ +GV P 
Sbjct: 393 AQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPN 452

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHYAC++DLL RAG  +     + EKM      +  +W ALL  CR++G IE G  V  
Sbjct: 453 QEHYACLIDLLGRAGHFDTLMNQL-EKMP--CKPNDEIWNALLGVCRMHGNIEFGREVAE 509

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           K+ E+     + +VL  +I+   G W++  N VR+L++E  ++K    S IE+   V  F
Sbjct: 510 KIIELDPQSSAAYVLLSSIHAAVGRWELVEN-VRQLMNERHVRKDRAISWIEIENKVHSF 568

Query: 419 LAGDNRHAQAGEIY 432
            A D  H     IY
Sbjct: 569 TASDRLHPLKEVIY 582



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 137/283 (48%), Gaps = 6/283 (2%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMG 83
           G    + T   L++ C     L+  G +VH H+   G    + F+ + L+  YS      
Sbjct: 45  GIRLPSKTLAYLLQQCANTKSLK-LGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYP 103

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           +A  +FD+   R++ +W  M+ GY K+G  + AR+LF+KMPE++ VSW+ ++ AY++   
Sbjct: 104 SAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGF 163

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             + L  +R+++ +G+  NE     +L  C  +  +      H          N++++++
Sbjct: 164 CNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSS 223

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           V+D Y+KC  +  A  +F+ +  +D  AW  M+SG A  GD + + ELFD M     +  
Sbjct: 224 VLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLM----PEKN 279

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
              + +++       +    L LF  M A+     Q    +C+
Sbjct: 280 PVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCL 322


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 239/412 (58%), Gaps = 4/412 (0%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +ML  G  P+  T    I AC  LG L + G   HA+V++ G      + +++++ Y   
Sbjct: 322 EMLQKGPRPDKVTMLSTIAACAQLGDL-SVGKSSHAYVLRNGLEGWDNISNAIIDMYMKC 380

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            K   A  +F+  P++ VVTW +++ G  + GD E A  +F++M ER+ VSW+ ++ A  
Sbjct: 381 GKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALV 440

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           ++S F+E + LFR+MQ  G+  +   +V + +AC +LGA+    WV +Y ++  +  ++ 
Sbjct: 441 QVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQ 500

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L TA+VDM+S+CG   SA+ VF+ +  +D  AW A I  +AM G+ + ++ELF+ M++  
Sbjct: 501 LGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQK 560

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P +  FVA+LT C+H   V  G  LF +M   +G+ P + HY C+VDLL RAG++EEA
Sbjct: 561 VKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEA 620

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
              I+     +   D  VWG+LL+ACR +  +E+ +    KL ++       HVL  NIY
Sbjct: 621 VDLIQSM--PIEPNDV-VWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIY 677

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             AG   +  +VR  + E G++K PG S IEV G++ EF +GD  HA+   I
Sbjct: 678 ASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHI 729



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/396 (28%), Positives = 194/396 (48%), Gaps = 62/396 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  A     ++  Y+ ML MG  P+ YTFP L+ AC  +  L   G+ VH  V+K 
Sbjct: 101 LIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSE-GVQVHGAVLKM 159

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL+ FY+   K+   R LFD   +R+VV+WT++++GY       + R+L 
Sbjct: 160 GLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGY-------SGRDL- 211

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                   KE +SLF QM E G++PN   +V V++ACA L  + 
Sbjct: 212 -----------------------SKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLE 248

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V SY     +E + I+  A+VDMY KCG + +A  +F+  +NK+   +N ++S   
Sbjct: 249 LGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYV 308

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNLFEN 289
            +  A   L + D M++ G +P + T ++ +  C           +HA ++R+GL  ++N
Sbjct: 309 HHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDN 368

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +S              ++D+  + G  E A K  E     +       W +L++     G
Sbjct: 369 ISNA------------IIDMYMKCGKREAACKVFEH----MPNKTVVTWNSLIAGLVRDG 412

Query: 350 KIEVGNRVWRKLAEMGITDFSTHV---LSYNIYKEA 382
            +E+  R++ ++ E  +  ++T +   +  ++++EA
Sbjct: 413 DMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEA 448



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 105/195 (53%), Gaps = 1/195 (0%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           ++ ++  Y+      + + L+ QM  +G+ P++     +L+AC+ + A+++G+ VH    
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +  LE ++ ++ +++  Y++CG V     +F+G+  ++  +W ++I+G +    +K+++ 
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVS 217

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           LF +M ++G +P   T V V++ C   K +  G  +   +S + G+E        +VD+ 
Sbjct: 218 LFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISEL-GMELSTIMVNALVDMY 276

Query: 311 ARAGMVEEAEKFIEE 325
            + G +  A +  +E
Sbjct: 277 MKCGDICAARQIFDE 291


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/437 (37%), Positives = 248/437 (56%), Gaps = 5/437 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q+ + + ++  +  M+  GF+PN   F   + A   L  L + G+ +H HV K 
Sbjct: 287 MIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL-SAGINIHGHVTKI 345

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  +D F+ SSL++ Y    K    R +FD   +++VV W +MV GY   G  E   ELF
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELF 405

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +PE+N VSW  I+A Y      ++VL +F  +   G  PN+S   SVL ACA + ++ 
Sbjct: 406 ELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ VH    +  ++ ++ + TA+ DMY+KCG + S+  VFE +  K+  +W  MI G+A
Sbjct: 466 KGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLA 525

Query: 241 MNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            +G A +SL LF+ M + S   P E   ++VL  C+H  +V  GL  F +M  VYG++P+
Sbjct: 526 ESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPK 585

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HY CVVDLL+R+G + EAE+FI          +AN W ALLS C+ Y   ++  R  +
Sbjct: 586 GKHYTCVVDLLSRSGRLYEAEEFIRTIP---FQPEANAWAALLSGCKKYKDEKIAERTAK 642

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL ++   + + +VL  NIY  AG  ++ + +RKL+ E G+KK  GCS +EV   V  F 
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFY 702

Query: 420 AGDNRHAQAGEIYRVIH 436
           + D  H+Q+ EIY  + 
Sbjct: 703 SEDGSHSQSNEIYGTLQ 719



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 180/347 (51%), Gaps = 35/347 (10%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           NF  L +F    +L+ G  PN+ TF  +++AC  LG     GM +   VVK GF     V
Sbjct: 165 NFEALKLF--FRLLESGVRPNDVTFTSVVRACGELGDF-GLGMSILGLVVKAGFEHYLSV 221

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            +SL+     + ++  AR +FD+   RDVV+WT ++D Y + GD   AR +F++MPERN 
Sbjct: 222 SNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNE 281

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           +SWSA++A YS+    +E L LF +M + G KPN S     L+A A L A++ G+ +H +
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG----- 243
             +  ++K+V + ++++D+Y KCG       VF+ I  K+   WN+M+ G ++NG     
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401

Query: 244 --------------------------DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
                                       +K LE+F+ ++ SG  P ++TF +VL  C   
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             +  G+N+   +  + G++  +     + D+ A+ G +  +++  E
Sbjct: 462 ASLDKGMNVHGKIIKL-GIQYDIFVGTALTDMYAKCGDIGSSKQVFE 507



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 24  MGFEPNNYTFPPLIKACV-ILGPLENFGMF-----VHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  +P   +F    + CV +L    N G+      +HAH++K GF    ++   LL  Y 
Sbjct: 9   LAIDPKK-SFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYL 67

Query: 78  LVHKMG-------------------------------TARALFDKSPDRDVVTWTTMVDG 106
              K                                  AR LFD+ P+R+ V+W+ ++ G
Sbjct: 68  NCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISG 127

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
             K G  E +   FE+ P +N VSW+A ++ + R     E L LF ++ E G++PN+   
Sbjct: 128 LMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTF 187

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLE------------------------------- 195
            SV+ AC  LG    G+ +     +   E                               
Sbjct: 188 TSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEK 247

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           ++V+  TA++D Y + G +  A  +F+ +  ++  +W+AMI+  + +G A+++L+LF +M
Sbjct: 248 RDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKM 307

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           V+ G +P  + F   L+     + +  G+N+  +++ + G++  +   + ++DL  + G
Sbjct: 308 VQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI-GIDKDVFIGSSLIDLYCKCG 365


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/411 (37%), Positives = 237/411 (57%), Gaps = 23/411 (5%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF-GFGEDPFVVSSLLEFYSLVHKMGT 84
            +PN++TFP L KAC    P    G  +HAHV+KF     DPFV +SLL FY+   K+  
Sbjct: 100 LQPNSFTFPSLFKACAS-HPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCV 158

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           +R LFD+  + D+ TW TM+  Y +     +    FE           A M+        
Sbjct: 159 SRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFE----------DADMSL------- 201

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E L LF  MQ   +KPNE  LV++++AC++LGA++QG W H Y  R +L+ N  + TA+
Sbjct: 202 -EALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLKLNRFVGTAL 260

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           VDMYSKCG ++ A  +F+ +S++D   +NAMI G A++G   ++LEL+  M      P  
Sbjct: 261 VDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQALELYRNMKLEDLVPDG 320

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            T V  +  C+H  +V +GL +FE+M  V+G+EP+LEHY C++DLL RAG ++EAE+ ++
Sbjct: 321 ATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQ 380

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
           +        +A +W +LL A +++G +E+G    + L E+       +VL  N+Y   G 
Sbjct: 381 DMP---MKPNAILWRSLLGAAKLHGNLEMGEAALKHLIELEPETSGNYVLLSNMYASIGR 437

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
             +  +VR L+ + G+ K PG S++E+NG + EFL GD  H  + EIY  I
Sbjct: 438 WNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKAHPFSKEIYSKI 488



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 36/234 (15%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           L +FC  DM     +PN  T   LI AC  LG L   G + H +V++     + FV ++L
Sbjct: 204 LHLFC--DMQLSQIKPNEVTLVALISACSNLGALSQ-GAWAHGYVLRNNLKLNRFVGTAL 260

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           ++ YS    +  A  LFD+  DRD   +  M+ G+   G    A                
Sbjct: 261 VDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHGNQA---------------- 304

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
                          L L+R M+   + P+ + +V  + AC+H G + +GL +    K  
Sbjct: 305 ---------------LELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGV 349

Query: 193 H-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGD 244
           H +E  +     ++D+  + G +  A    + +  K +A  W +++    ++G+
Sbjct: 350 HGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGN 403


>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 499

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/412 (37%), Positives = 241/412 (58%), Gaps = 8/412 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF-----VHA 55
           +IRGY +++ P   V  +  M     +P+ +TF  LIKA   +  + NF        +H 
Sbjct: 87  IIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHG 146

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            V K+GF    FV ++L+  Y++      A  +F+++   DVV+W+ +V  + + G+ E 
Sbjct: 147 AVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELEL 206

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR++F+ MPE++ VSW+A+++ YS+ +  +E L LF +M + G++P+E  +VSV++AC +
Sbjct: 207 ARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACTN 266

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LG +  G+ VHSY         V L  A+++MY+KCG V  A  VF  +  K    WN+M
Sbjct: 267 LGDVETGMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSM 326

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           IS  A +G A+ + ELF  M+ SG  P   TF+A+L   TH  +V +G  LF+ M   YG
Sbjct: 327 ISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYG 386

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +E  +EHY C+VD+L RAG +EEA + I      +   D  VWGALL+ACRIYG + +G 
Sbjct: 387 IEASIEHYGCIVDMLGRAGRLEEAYELIVTM--PIPSNDI-VWGALLAACRIYGDVNMGE 443

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
           RV +KL E+   +   ++L  +IY  +G   EAN +R+ + E+G  K PG S
Sbjct: 444 RVVKKLLELKPDEGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYS 495



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 146/333 (43%), Gaps = 33/333 (9%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK--MGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HAH +         ++  +L F ++     +  A+ LFD+ P  +   + T++ GY K 
Sbjct: 35  IHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNTIIRGYAKS 94

Query: 111 GDFENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
                   LF +M +     +  +++ ++ A SR+       S   +  E+       G 
Sbjct: 95  SSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTL-ECDEI------HGA 147

Query: 167 VSVLTACAHLGAITQGLWVHSYAKR-----------YHLEKNVILATAVVDMYSKCGHVH 215
           V     C+HL    Q   ++ YA +             +  +V+  + +V  + + G + 
Sbjct: 148 VFKYGFCSHL--FVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELE 205

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  VF+ +  KD  +W AM+SG +    ++++LELF  M  +G +P E T V+V++ CT
Sbjct: 206 LARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACT 265

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGD 334
           +   V  G+N+   ++   G    +     ++++ A+ G V+ A + F   K   L    
Sbjct: 266 NLGDVETGMNVHSYINE-NGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSL---- 320

Query: 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
              W +++SAC  +G  E    ++  +   GI 
Sbjct: 321 -ITWNSMISACANHGYAEDAFELFSCMLNSGIA 352



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 94/240 (39%), Gaps = 16/240 (6%)

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           S L S+   C  +  + Q +  HS     H    ++         S  G +  A  +F+ 
Sbjct: 17  SILASIAENCQSMNHLKQ-IHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQ 75

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD- 282
           +   +   +N +I G A +      + LF++M ++   P E TF  ++   +    V + 
Sbjct: 76  MPQPNTFFYNTIIRGYAKSSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNF 135

Query: 283 --GLNLFENMSAV--YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
              L   E   AV  YG    L     +++L A  G    A +   E +    G D   W
Sbjct: 136 PSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPAAAWRVFNETV----GVDVVSW 191

Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY---NIYKEA---GWDMEANKVR 392
             L+ A    G++E+  +V+  + E  +  ++  V  Y   N  +EA    W+M    +R
Sbjct: 192 SGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIR 251


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 241/427 (56%), Gaps = 11/427 (2%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFYSLV 79
           M ++GF+P+  T   ++ AC  L   +  G+ +HA VVK   F  D  + ++L++ Y+  
Sbjct: 248 MTELGFKPDEVTLASVVSACATLAAFKE-GVQIHARVVKSDKFRNDLILGNALVDMYAKC 306

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            ++  AR +FD+ P R+ V+ TTMV GY K    + AR +F  + +++ VSW+A++A Y+
Sbjct: 307 GRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYT 366

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL----- 194
           +  + +E L LFR ++   + P      ++L A A+L  +  G   HS+  ++       
Sbjct: 367 QNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSG 426

Query: 195 -EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            E ++ +  +++DMY KCG V   L VFE +  KD  +WN MI G A NG   ++LELF 
Sbjct: 427 EEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQ 486

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           +M++SG +P   T +  L  C+HA +V +G   F +M+  +G+ P  +HY C+VDLL RA
Sbjct: 487 KMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRA 546

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G +EEA+  IE         DA VW +LLSAC+++  I +G  V  K+ E+  T    +V
Sbjct: 547 GCLEEAKDLIESMP---KQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYV 603

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y E G   +A  VRKL+   G+ K+PGCS I++   V  F+  D RH Q  EIY 
Sbjct: 604 LLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQKKEIYS 663

Query: 434 VIHSFLK 440
           ++    K
Sbjct: 664 ILKLLTK 670



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 1/295 (0%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
           F  ++  F  L+  CV L    +    VH  +++  F E+ F+ + L++ Y     +  A
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRD-ARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYA 78

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R +FD+  +R+V ++ +++    + G  + +  LF  MPE++  SW++++A +++   F+
Sbjct: 79  RKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFE 138

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E L  F +M       N+    S L+AC+ L  +  G  +H    +     +V + + ++
Sbjct: 139 EALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLI 198

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           D YSKCG V  A  VF+G+  K+  +WN +I+    NG A ++LE F RM + G +P E 
Sbjct: 199 DFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEV 258

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           T  +V++ C      ++G+ +   +         L     +VD+ A+ G V EA 
Sbjct: 259 TLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEAR 313


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 157/441 (35%), Positives = 239/441 (54%), Gaps = 37/441 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+  N    S++ +  M      P++ TFP ++KA   L      G  +H  V++ 
Sbjct: 60  MIRTYLDLNKHLNSLYIFALMHKFSILPDSSTFPAVLKATAQLCD-TGVGKMIHGIVIQM 118

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF                                 DV T T +V  Y       +A +LF
Sbjct: 119 GF-------------------------------ICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPERNAV+W+A++  Y+    F + +  FR M   G +P+E  +V VL+AC+HLGA  
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H +     L  NV + TA++DMY+KCG V+    VFE I  K+   WN +ISG A
Sbjct: 208 QGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYA 267

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           MNG    +L+ F RM+    +P E TF+ VL  C H  +V +G   F +M   +G++P++
Sbjct: 268 MNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRI 327

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG++EEA + I+         D  +W ALL ACR++G  ++G  + ++
Sbjct: 328 EHYGCMVDLLGRAGLLEEALELIQSMS---IEPDPIIWRALLCACRVHGNTKLGEYIIKR 384

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +VL  NIY +E  W  E  K+R +++  G++K PGCS IE+N VV EF+
Sbjct: 385 LIELEPNNGENYVLLSNIYSRERRW-AEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFV 443

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
           A ++R  +   IY+ + + +K
Sbjct: 444 ASNDRKPEFEAIYKQLDNLIK 464



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 13/277 (4%)

Query: 103 MVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
           ++D       FE+   +F K     N+   ++++  Y  ++     L +F  M +  + P
Sbjct: 28  LIDDSVSRNGFESIARIFSKYRGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKFSILP 87

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           + S   +VL A A L     G  +H    +     +V  +TA+V +Y  C  +  A  +F
Sbjct: 88  DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLF 147

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           + +  ++A  WNA+I+G   N    K+++ F  M+  G QP+E T V VL+ C+H     
Sbjct: 148 DEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFN 207

Query: 282 DGLNLFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
            G  + E    +Y    +L  +    ++D+ A+ G V E EK  EE    +   +   W 
Sbjct: 208 QGKWIHE---FIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEE----IREKNVYTWN 260

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            L+S   + G+   G+   +  + M + +F    +++
Sbjct: 261 VLISGYAMNGQ---GDAALQAFSRMLMENFKPDEVTF 294


>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 582

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 143/362 (39%), Positives = 220/362 (60%), Gaps = 8/362 (2%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR LFD++P+RD+V W +M+DGY + G  + AR LFE+MPERN +SWS ++  Y R  + 
Sbjct: 225 ARELFDETPNRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEP 284

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E L LF++M   G+KP+    V   TACA LGA+ QG W+HSY ++  +  +V++ TA+
Sbjct: 285 SEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTAL 344

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY KCG +     +FE + +K    WN MI G+  +     +++LF +M   G    +
Sbjct: 345 IDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDD 404

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            + +AVLT CTHA ++ +GL +F  M   +G++P++EHY  +VDLL RAG ++ A   IE
Sbjct: 405 LSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIE 464

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                       +WG+LL+ACR +  +E+      +LA +G  DF  +VL  NIY + G 
Sbjct: 465 TMP---MEPTPELWGSLLAACRSHRCVELAELSVERLASLGADDFGVYVLLSNIYADEGM 521

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443
           WD    ++R+L+S  GMKK  G SVIEV+G   EF+ G + H+   E++ ++ +   +SN
Sbjct: 522 WD-GVFRIRRLMSAEGMKKDIGRSVIEVDGQTHEFVNGGSSHSCKDEVHLMLQN---LSN 577

Query: 444 LV 445
           +V
Sbjct: 578 MV 579



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 33/223 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY++   P  ++  +  ML  G +P+         AC  LG LE  G ++H+++ K 
Sbjct: 274 VVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQ-GRWLHSYLEKK 332

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y    ++   + +F+  PD+ VVTW  M+ G G            
Sbjct: 333 KVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKSVVTWNVMIIGLGT----------- 381

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                 ++    A+               LF QM+  G   ++  +++VLTAC H G I+
Sbjct: 382 ------HSCGLHAV--------------KLFYQMEAEGAPIDDLSVLAVLTACTHAGLIS 421

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +GL + H   K + ++  V    A+VD+  + GH+  A    E
Sbjct: 422 EGLGIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIE 464



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 110/314 (35%), Gaps = 106/314 (33%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +  A+ P+ ++  +  M     EP+ YTFP ++KAC         G+ VHA  V+ 
Sbjct: 84  LIRLHAPAS-PRNALAYFACMRRAAVEPDAYTFPAVLKACAC----GVLGLPVHAEAVRT 138

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F  ++L+ FY                                ++GD  + R++F
Sbjct: 139 GMDGDLFTRNALVSFYC-------------------------------RIGDCRSGRKVF 167

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +    R+ VSW++++A Y    + +    LF      GM   +              A +
Sbjct: 168 DH-GARDLVSWNSMVAGYVACGELELAQELFD-----GMPLRD--------------AFS 207

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
               + +Y KR                    G V  A  +F+   N+D   W +MI G A
Sbjct: 208 WATMIDAYGKRS-------------------GGVDRARELFDETPNRDLVCWCSMIDGYA 248

Query: 241 MN-------------------------------GDAKKSLELFDRMVKSGTQPTETTFVA 269
                                            G+  ++LELF RM++ G +P     V 
Sbjct: 249 RQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVG 308

Query: 270 VLTTCTHAKMVRDG 283
             T C     +  G
Sbjct: 309 AFTACAQLGALEQG 322



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 108/268 (40%), Gaps = 58/268 (21%)

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           R+A  W+ ++  ++  S  +  L+ F  M+   ++P+     +VL ACA  G +  GL V
Sbjct: 76  RDAFPWNTLIRLHAPASP-RNALAYFACMRRAAVEPDAYTFPAVLKACA-CGVL--GLPV 131

Query: 186 HSYAKRYHLEKNVILATAVVDMYSK------------------------------CGHVH 215
           H+ A R  ++ ++    A+V  Y +                              CG + 
Sbjct: 132 HAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGARDLVSWNSMVAGYVACGELE 191

Query: 216 SALSVFEGISNKDAGAWNAMISGVA-MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
            A  +F+G+  +DA +W  MI      +G   ++ ELFD          ET    ++  C
Sbjct: 192 LAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFD----------ETPNRDLVCWC 241

Query: 275 T----HAKMVR--DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM- 327
           +    +A+  R  +   LFE M      E  +  ++ VVD   R G   EA +  +  + 
Sbjct: 242 SMIDGYARQGRMDEARALFEEMP-----ERNVISWSIVVDGYVRCGEPSEALELFQRMLR 296

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGN 355
            G+        GA  +AC   G +E G 
Sbjct: 297 CGIKPDRVAAVGA-FTACAQLGALEQGR 323


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/418 (35%), Positives = 242/418 (57%), Gaps = 7/418 (1%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV--SSLLEFYS 77
           +M+ +G +P+ +T   L+  C  LG  +  G  VHA + + G  +   ++  ++LL+ Y 
Sbjct: 218 EMVGLGLKPDEFTMLGLLICCGRLGDAQ-LGKSVHAWIERRGLIKSSNLILNNALLDMYV 276

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++  A+++F+    +D ++W TM+ GY K+G+ E A   FE MP R+ VSW++I+A 
Sbjct: 277 KCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVSWNSIIAG 336

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y++  D   V  LF  M    + P+   ++++++A A +GA+  G W+H +  R  ++ +
Sbjct: 337 YAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVVRMQMKID 396

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             L +A +DMY KCG +  A  VF  ++ KD   W  MI+G A +G   K+L+LF  M +
Sbjct: 397 AFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQLFYEM-Q 455

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
               P + TFVAVLT C+H+  V  GL +F +M   YG+EP +EHY C+VDLL R+G   
Sbjct: 456 EYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLLGRSGRFS 515

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           E +  IE  M  +    + +WGA+LSACR YG IE+     ++L ++       +VL  N
Sbjct: 516 EVKDVIE--MMPMKPSRS-IWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYVLLSN 572

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           IY  +G    ++K+R+++   G+KK  GCS + V+G++ EF+A D RH +  EI  ++
Sbjct: 573 IYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEIQSIL 630



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 107/240 (44%), Gaps = 37/240 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  +L     PN  TF  L++A   L  +    M +H H +  G     ++ ++L++ Y 
Sbjct: 118 YNSLLSSCIYPNRSTFLFLLQASKFLSQV----MQIHCHAIITGSFYYGYLQNTLMKIYL 173

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              KMG A  +F +    D V++  M+ GY K G   N                      
Sbjct: 174 ENEKMGLAYQVFQQMAAPDAVSFNIMIFGYAKKG--HNI--------------------- 210

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK- 196
                   E L    +M  +G+KP+E  ++ +L  C  LG    G  VH++ +R  L K 
Sbjct: 211 --------EALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKS 262

Query: 197 -NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            N+IL  A++DMY KC  +  A S+F  I  KD  +WN MI+G A  G+ + +   F+ M
Sbjct: 263 SNLILNNALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDM 322


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 156/372 (41%), Positives = 225/372 (60%), Gaps = 13/372 (3%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D F  +S++  Y     M  A  LF+K P RD+V+W  M+DGY ++ + E A ELF  M
Sbjct: 254 RDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWM 313

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           P RN VSW+ ++A Y RI D+ E L +F +M    M PNE+ LVSVLTACAHLG + +G 
Sbjct: 314 PYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGK 372

Query: 184 WVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
           W+HSY K    +E +V+L+TA++ MY+KCG +  A  VF+ +SN+   +WN+MI G  M+
Sbjct: 373 WIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMH 432

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G A K+LE+F  M K G  P + TF+ VL+ C H+ M+ +G   F+ M   Y +EP++EH
Sbjct: 433 GQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEH 492

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y C+VDLL RAG++++ E+ I  KM   GG    +WGALLSACR +   E+   V ++L 
Sbjct: 493 YGCMVDLLGRAGLMKDLEELI-RKMPMEGG--TALWGALLSACRTHSNSELAEIVAKRLI 549

Query: 363 EMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
           E+   D   ++L  NIY   G WD +   VRK++ E G+ K  G S +     +EEF  G
Sbjct: 550 ELEPRDIGPYLLLSNIYAAEGKWD-DVEIVRKMMKERGLTKTTGFSWVH----IEEF--G 602

Query: 422 DNRHAQAGEIYR 433
                +   ++R
Sbjct: 603 TQSFVEKASVHR 614



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 159/326 (48%), Gaps = 42/326 (12%)

Query: 1   MIRGYMQANFPKLSV-FCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++R Y+  N P  ++ F Y  M+     PN+YTFP L+K C  +G + + G  +HA ++K
Sbjct: 129 IMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGD-GEKIHARILK 187

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF  D FV +SL+  YS+  ++G ARA+F+     D+VTW +M+DGY K G+   AREL
Sbjct: 188 FGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAAREL 247

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+MPER+  SW++++A Y    D      LF +M                         
Sbjct: 248 FEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMP------------------------ 283

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
                           ++++    ++D Y++  ++  A  +F  +  ++  +WN M++  
Sbjct: 284 ---------------FRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALY 328

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
               D  + L +FD+M+   T P E T V+VLT C H   +  G  +   +     +EP 
Sbjct: 329 VRIKDYDECLRMFDKMMGE-TMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPD 387

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEE 325
           +     ++ + A+ G ++ A    ++
Sbjct: 388 VLLSTALLTMYAKCGAMDLARDVFDK 413



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTA 172
           ++A  LFE + E +A   + IM  Y  ++D    L  +  QM    + PN      ++  
Sbjct: 109 QHAVSLFEGLEEPDAFICNTIMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKV 168

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C  +G+I  G  +H+   ++  E ++ +  +++ MYS CG +  A ++FE  S  D   W
Sbjct: 169 CWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTW 228

Query: 233 NAMISGVAMNGDAKKSLELFDRM 255
           N+MI G   NG+   + ELF+ M
Sbjct: 229 NSMIDGYVKNGEIGAARELFEEM 251


>gi|242096286|ref|XP_002438633.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
 gi|241916856|gb|EER90000.1| hypothetical protein SORBIDRAFT_10g023240 [Sorghum bicolor]
          Length = 529

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 146/413 (35%), Positives = 248/413 (60%), Gaps = 5/413 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y++      +V    +M   G  P+  T    + AC   G L + G  + A++   
Sbjct: 118 MMRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDL-SLGRRIRAYMDGV 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG    V ++LL+ Y+    +  A  +F + P+R++++WT +V GY   G  + AR LF
Sbjct: 177 -FGFSLPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLF 235

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +  +++ + W+A++ A  +   F+E L+LFR MQ   ++P++  +V++LT CA++GA+ 
Sbjct: 236 YQCTQKDLILWTAMINACVQHGSFEEALTLFRDMQLQRVEPDKFTVVTLLTCCANIGALD 295

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H YA+  +++ + +L TA+++MYSKCGHV  +L +F  +  +DA AW A+I G+A
Sbjct: 296 QGEWIHQYAEGRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGRDAAAWTAIICGLA 355

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A K+LELF+ M +S T+P   TF+ VL  C H  +V +G   F+ M  +Y +EP++
Sbjct: 356 TNGQASKALELFEEMQRSKTKPDGITFIGVLNACCHGGLVDEGRRHFQAMKEIYQIEPRI 415

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+V+LL  AG++ EAEK I +    +      ++GALL+AC+ YG +E+  R+ ++
Sbjct: 416 EHYSCLVNLLGHAGLLYEAEKLIRDM--PVNNDTMPLFGALLTACKAYGNVEMSERLTKR 473

Query: 361 LAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           +A+   + +   +VL  N+Y  A    E+ +VR  ++   +KK  GCS+IEV 
Sbjct: 474 IAKEDCSQNPDVNVLMSNVYATASRWEESIRVRSKMTHPAVKKTAGCSMIEVK 526



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 142/303 (46%), Gaps = 38/303 (12%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y D+   G   ++YT+P +++A  ++  L   G  VHA  VK GF  D +  SSLLE Y+
Sbjct: 34  YYDLRARGLVADSYTYPFVLRAIGVM-KLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYT 92

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           +                               +G  + AR++F++MP+R  V W+ +M  
Sbjct: 93  M-------------------------------LGRVDFARKVFDEMPQRFLVLWNMMMRC 121

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y R   F   ++L  +M+  G  P+   LV+ +TAC+  G ++ G  + +Y        +
Sbjct: 122 YIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGV-FGFS 180

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +A A++DMY+K G++  A+ +F+ +  ++  +W  ++SG A+ G   K+  LF     
Sbjct: 181 LPVANALLDMYTKNGYLEEAVKMFQQMPERNIISWTILVSGYAVAGQLDKARMLF----Y 236

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
             TQ     + A++  C       + L LF +M  +  VEP       ++   A  G ++
Sbjct: 237 QCTQKDLILWTAMINACVQHGSFEEALTLFRDMQ-LQRVEPDKFTVVTLLTCCANIGALD 295

Query: 318 EAE 320
           + E
Sbjct: 296 QGE 298



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 5/210 (2%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A   +  MP R+    + ++   +R   F  V++++  ++  G+  +      VL A   
Sbjct: 2   ATACYHAMPLRDC---NVLIRTLARRGSFARVMAVYYDLRARGLVADSYTYPFVLRAIGV 58

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           +    +G  VH+ A +     +   A+++++MY+  G V  A  VF+ +  +    WN M
Sbjct: 59  MKLSVEGRKVHAAAVKTGFRWDAYTASSLLEMYTMLGRVDFARKVFDEMPQRFLVLWNMM 118

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           +      G    ++ L + M +SG  P   T V  +T C+ A  +  G  +   M  V+G
Sbjct: 119 MRCYIRCGRFTAAVALAEEMERSGATPDRVTLVTAVTACSRAGDLSLGRRIRAYMDGVFG 178

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
               + +   ++D+  + G +EEA K  ++
Sbjct: 179 FSLPVAN--ALLDMYTKNGYLEEAVKMFQQ 206


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 156/442 (35%), Positives = 239/442 (54%), Gaps = 37/442 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY+Q++  +L++  + ++L D    P+  T    +  C  LG L+  G  +H     
Sbjct: 201 MISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLD-LGKKIHGLFTG 259

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  D FV SSL                               +D Y K G  E+AR++
Sbjct: 260 SGFVLDVFVGSSL-------------------------------IDMYSKCGQIEDARKV 288

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+++P RN V W++++A Y++   FKE + LFR+MQ  G   + + +  VL+AC H GA+
Sbjct: 289 FDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGAL 348

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+H Y +R  +E ++    A++ MYSKCG +  AL +F G++  D  +W+A+ISG+
Sbjct: 349 AQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGL 408

Query: 240 AMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           AMNG++ K+L LF +M + S  +P E TF+ VL  C H   V  GL  F  M+ +Y + P
Sbjct: 409 AMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTP 468

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C+VDLL RA ++ EAEKFI          D  +W +LL ACR +G IE+     
Sbjct: 469 GIEHYGCMVDLLGRANLLVEAEKFIRTLP---IQPDVVIWRSLLFACRNHGNIELAEFAA 525

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +++ E+        VL  N+Y  A    +  +VRK ++   +KK+PGCS +E++G+V E 
Sbjct: 526 KQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPGCSFVEIDGLVHEL 585

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
              D  H + G IY  + S  K
Sbjct: 586 FVADRSHPEMGAIYETMISINK 607



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 169/354 (47%), Gaps = 42/354 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M R Y +++FP  ++  Y  ML  G  P+NY+FP ++KAC  L  L   G  +H+  +K 
Sbjct: 98  MFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHK-GREIHSSTLKL 156

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--RDVVTWTTMVDGYGKMGDFENARE 118
           G   D FV ++L+  +S    +  ARA+FD  P   RDVV+W +M+ GY +   +E A +
Sbjct: 157 GVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALK 216

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F ++                              + +  + P+E  LVS L+ C  LG 
Sbjct: 217 VFWEL------------------------------LGDGSLSPDEVTLVSALSVCGRLGL 246

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +H          +V + ++++DMYSKCG +  A  VF+ I +++   W +MI+G
Sbjct: 247 LDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAG 306

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGV 296
            A +   K+++ELF  M   G      T   VL+ C H   +  G  ++L+   ++   +
Sbjct: 307 YAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNS---I 363

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           E  L     ++ + ++ G +++A     E   GL   D   W A++S   + G+
Sbjct: 364 EMDLNARNALIGMYSKCGDIQKA----LEIFHGLTQPDIFSWSAVISGLAMNGE 413



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 147/337 (43%), Gaps = 65/337 (19%)

Query: 55  AHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE 114
           +H +  G   DP VVSS L +YSL H                               DF 
Sbjct: 49  SHAIASGVFRDP-VVSSKLLYYSLSHDH-----------------------------DFA 78

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
            +R LF ++ + N  SW+ +  AYSR S   E ++L+  M   G  P+      VL ACA
Sbjct: 79  FSRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACA 138

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAW 232
            L  + +G  +HS   +  +  +V +  A++  +S CG V +A +VF+ +    +D  +W
Sbjct: 139 RLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSW 198

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDG-------- 283
           N+MISG   +   + +L++F  ++  G+  P E T V+ L+ C    ++  G        
Sbjct: 199 NSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFT 258

Query: 284 -----LNLFENMSAV--YGVEPQLEHYACVVDLL---------------ARAGMVEEA-E 320
                L++F   S +  Y    Q+E    V D +               A++ + +EA E
Sbjct: 259 GSGFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIE 318

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
            F E ++GG    DA     +LSAC  +G +  G  +
Sbjct: 319 LFREMQIGGF-AADAATIACVLSACGHWGALAQGRWI 354


>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
          Length = 613

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 238/424 (56%), Gaps = 39/424 (9%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++DM+D G EP++YTFP + KAC  LG L+  G  +  H+VK GF  D    +SL+ FY 
Sbjct: 126 FVDMVDDGVEPDSYTFPFVFKACAQLGALQE-GRQLQGHLVKLGFQRDEHSQNSLISFY- 183

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP--ERNAVSWSAIM 135
                                         GK G+ + AR  FE+M   E+   SWSA++
Sbjct: 184 ------------------------------GKCGEADLARRAFEQMEDDEQTTASWSALL 213

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           AAY+R   + E +  F  M   G +P+ES +VS L+ACAHLGA   G  +H    R    
Sbjct: 214 AAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNTAR 273

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            N  ++T++VDMY+KCG + +A +VF+ + +K+A  ++AM+SG+A++GD +K+LE+FD M
Sbjct: 274 LNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFDAM 333

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           V+ G +P    +V VL  C+ A ++ +GL  F+ M   + + P  +HY C+VDL+ARAG 
Sbjct: 334 VREGHRPDAAVYVGVLNACSRAGLLEEGLRCFDRMRLEHKLTPNAQHYGCMVDLMARAGR 393

Query: 316 VEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           +++A   I    G +  G  +  W +LL+ACRI+G +E+  R  ++L  +G T+   +++
Sbjct: 394 LDDARALI----GSMPTGPTDTAWRSLLNACRIHGNLELAERALQELERLGATNAGDYII 449

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
             +++  A     A   R    + G+ + PG S +EV+G    F++ D  H +A +IY +
Sbjct: 450 LSDMHARAHNRDAAAARRTEAVDRGLAQAPGYSAVEVHGATHRFVSQDRSHPRADDIYEM 509

Query: 435 IHSF 438
           +H  
Sbjct: 510 LHQM 513



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 32/246 (13%)

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L LF  M + G++P+      V  ACA LGA+ +G  +  +  +   +++     +++  
Sbjct: 123 LRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISF 182

Query: 208 YSKCGHVHSALSVFEGISNKD--AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           Y KCG    A   FE + + +    +W+A+++     G   + +E F  MV++G +P E+
Sbjct: 183 YGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDES 242

Query: 266 TFVAVLTTCT-----------HAKMVRDG--LNLF---------------ENMSAVYGV- 296
           + V+ L+ C            H  ++R+   LN F               EN +AV+   
Sbjct: 243 SMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFDAM 302

Query: 297 -EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            +     Y+ +V  LA  G   +A +  +  +      DA V+  +L+AC   G +E G 
Sbjct: 303 DDKNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGL 362

Query: 356 RVWRKL 361
           R + ++
Sbjct: 363 RCFDRM 368


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 162/433 (37%), Positives = 247/433 (57%), Gaps = 5/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q+ + + ++  +  M+  GF+PN   F   + A   L  L + G+ +H HV K 
Sbjct: 287 MIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL-SAGINIHGHVTKI 345

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  +D F+ SSL++ Y    K    R +FD   +++VV W +MV GY   G  E   ELF
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELF 405

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +PE+N VSW  I+A Y      ++VL +F  +   G  PN+S   SVL ACA + ++ 
Sbjct: 406 ELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ VH    +  ++ ++ + TA+ DMY+KCG + S+  VFE +  K+  +W  MI G+A
Sbjct: 466 KGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLA 525

Query: 241 MNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            +G A +SL LF+ M + S   P E   ++VL  C+H  +V  GL  F +M  VYG++P+
Sbjct: 526 ESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPK 585

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HY CVVDLL+R+G + EAE+FI          +AN W ALLS C+ Y   ++  R  +
Sbjct: 586 GKHYTCVVDLLSRSGRLYEAEEFIRTIP---FQPEANAWAALLSGCKKYKDEKIAERTAK 642

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL ++   + + +VL  NIY  AG  ++ + +RKL+ E G+KK  GCS +EV   V  F 
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFY 702

Query: 420 AGDNRHAQAGEIY 432
           + D  H+Q+ EIY
Sbjct: 703 SEDGSHSQSNEIY 715



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 180/347 (51%), Gaps = 35/347 (10%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           NF  L +F    +L+ G  PN+ TF  +++AC  LG     GM +   VVK GF     V
Sbjct: 165 NFEALKLF--FRLLESGVRPNDVTFTSVVRACGELGDF-GLGMSILGLVVKAGFEHYLSV 221

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            +SL+     + ++  AR +FD+   RDVV+WT ++D Y + GD   AR +F++MPERN 
Sbjct: 222 SNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNE 281

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           +SWSA++A YS+    +E L LF +M + G KPN S     L+A A L A++ G+ +H +
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG----- 243
             +  ++K+V + ++++D+Y KCG       VF+ I  K+   WN+M+ G ++NG     
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEET 401

Query: 244 --------------------------DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
                                       +K LE+F+ ++ SG  P ++TF +VL  C   
Sbjct: 402 EELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             +  G+N+   +  + G++  +     + D+ A+ G +  +++  E
Sbjct: 462 ASLDKGMNVHGKIIKL-GIQYDIFVGTALTDMYAKCGDIGSSKQVFE 507



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 24  MGFEPNNYTFPPLIKACV-ILGPLENFGMF-----VHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  +P   +F    + CV +L    N G+      +HAH++K GF    ++   LL  Y 
Sbjct: 9   LAIDPKK-SFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYL 67

Query: 78  LVHKMG-------------------------------TARALFDKSPDRDVVTWTTMVDG 106
              K                                  AR LFD+ P+R+ V+W+ ++ G
Sbjct: 68  NCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISG 127

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
             K G  E +   FE+ P +N VSW+A ++ + R     E L LF ++ E G++PN+   
Sbjct: 128 LMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTF 187

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLE------------------------------- 195
            SV+ AC  LG    G+ +     +   E                               
Sbjct: 188 TSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEK 247

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           ++V+  TA++D Y + G +  A  +F+ +  ++  +W+AMI+  + +G A+++L+LF +M
Sbjct: 248 RDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKM 307

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           V+ G +P  + F   L+     + +  G+N+  +++ + G++  +   + ++DL  + G
Sbjct: 308 VQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI-GIDKDVFIGSSLIDLYCKCG 365


>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
          Length = 491

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 150/434 (34%), Positives = 247/434 (56%), Gaps = 9/434 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  L+  C       E     +H +  K G      +V ++++  
Sbjct: 50  FSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSNLLHGYACKLGLDRTHVMVGTAIIGM 109

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS    +  AR +FD   D + VTW TM+DGY + G  +NA ++F+KMPER+ +SW+A++
Sbjct: 110 YSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQVDNAVKMFDKMPERDLISWTAMI 169

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E L  FR+MQ  G++P+   +++ L AC +LGA++ GLWVH Y      +
Sbjct: 170 NGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNACTNLGALSFGLWVHRYVMNQDFK 229

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 230 NNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 289

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G +P   TF   LT C+H  +V +GL  F+ M   YG+ P++EHY C+VDL +RAG 
Sbjct: 290 QEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGR 349

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVL 374
           +E+A K IE         +  V G+LL+ACR +G   V   R+ + L+++ +   S +V+
Sbjct: 350 LEDALKVIESMP---MKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDLNVKSHSNYVI 406

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG---EI 431
             N+Y   G    A+++R+ +   G+KK+PG S IE++     F+AGD+ H +     E+
Sbjct: 407 LSNMYAADGKWEGASQMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETAIIREV 466

Query: 432 YRVIHSFLKMSNLV 445
             ++ S L++   V
Sbjct: 467 LELVSSDLRLQGCV 480



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 105/233 (45%), Gaps = 37/233 (15%)

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL--GAITQGLWV 185
            VSW++ +   +R     E    F  M+  G++PN    +++L+ C     G+ T    +
Sbjct: 27  TVSWTSRITLLTRNGRLAEAAKXFSDMRLSGVEPNHITFIALLSGCGDFPSGSETLSNLL 86

Query: 186 HSYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           H YA +  L++ +V++ TA++ MYSK GHV  A  VF+ + + ++  WN MI G   +G 
Sbjct: 87  HGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGYMRSGQ 146

Query: 245 AKKSLELFDRMVK-------------------------------SGTQPTETTFVAVLTT 273
              ++++FD+M +                               SG +P     +A L  
Sbjct: 147 VDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQISGVRPDYVAIIAALNA 206

Query: 274 CTHAKMVRDGLNLFEN-MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           CT+   +  GL +    M+  +    ++ +   ++DL  R G VE A +  ++
Sbjct: 207 CTNLGALSFGLWVHRYVMNQDFKNNVRVSN--SLIDLYCRCGCVEFAREVFDK 257


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 163/428 (38%), Positives = 257/428 (60%), Gaps = 26/428 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPN-NYTFPPLIKACVILGPLENF--GMFVHAH 56
           +I+G+   + P  S+  Y  ML  + +     ++ P ++KAC   G L  F  G  VH  
Sbjct: 78  LIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKAC---GKLLAFDEGRQVHGQ 134

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           V+K     DPFV +S++  Y    ++  AR +FD+ P+RDVV+W +M+ GY K G+ E A
Sbjct: 135 VLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            ELF++MPER+ VS +A++  Y      KE+LSL       G++P+   +VSVL+A A L
Sbjct: 195 SELFDEMPERDLVSCNAMIDGYG-----KEMLSL-------GLRPDGPAIVSVLSAIADL 242

Query: 177 GAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNA 234
           G + +G W+H+Y     +E  +  + +A++DMYSKCG++ +A  VF  IS++ + G WN+
Sbjct: 243 GFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNS 302

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MISG+A++G A+++L++F  M +   +P E TF+ +L+TC+H  +V +G   FE+M   Y
Sbjct: 303 MISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKY 362

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            + P+++HY C++DL  RAG +E+A   I+         D   W A+LSA   +G IE+G
Sbjct: 363 KIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMP---FEADLLAWKAILSASMKHGHIEIG 419

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNG 413
                +  E+   D S++VL  NIY +AG WD +  K+R ++ + G+KK  GCS + VNG
Sbjct: 420 KSAALRAIELAPDDSSSYVLLSNIYAKAGRWD-DVAKIRLMMRQRGVKKIAGCSSMLVNG 478

Query: 414 VVEEFLAG 421
            V EFL G
Sbjct: 479 KVHEFLLG 486


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  284 bits (727), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 154/388 (39%), Positives = 231/388 (59%), Gaps = 6/388 (1%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYG 108
           G  VHA  VK G   D +V ++ + FY +   +   R +FD+ P  RDVVTW  ++ GY 
Sbjct: 151 GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYV 210

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           + G    ARE+F+ MP R+ VSWS ++  Y +  + +  L +F+ M   G+K NE+ +V+
Sbjct: 211 RAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVT 270

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
            L+A A LG + QG +VH   KR  +  +V L  A++DMYSKCG V +A  VF+ +  +D
Sbjct: 271 ALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRD 330

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             AWN+MI G+A +G    +++LF++ V  G  PT  TFV VL  C+   +V +G   F+
Sbjct: 331 VFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFK 390

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M+  Y +E ++EHY C+VDLL+RAG+V+EA + IE   G     D  +WG +LSAC+ +
Sbjct: 391 LMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE---GMRIPPDPVLWGTILSACKRH 447

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCS 407
           G +++G  V  KL E+       +VL  +IY +A  WD E  KVRKL+S  G  K  G S
Sbjct: 448 GLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWD-EVRKVRKLMSNRGTSKSAGWS 506

Query: 408 VIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           ++E +G+V +FL GD  H  +  IY ++
Sbjct: 507 LMEAHGIVHKFLVGDMNHKDSARIYNML 534



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/313 (19%), Positives = 116/313 (37%), Gaps = 62/313 (19%)

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF ++P RN  S++ ++A+ S   D                +P  +G ++         
Sbjct: 111 RLFPRLPRRNPHSFTFLLASLSNHLD---------------TEPAAAGSIA--------- 146

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS--------------------- 216
           +   G  VH+ A +     ++ +  A +  Y  CG V +                     
Sbjct: 147 SRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVL 206

Query: 217 -----------ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
                      A  VF+G+  +D  +W+ +I G    G+ + +L +F  MV  G +  E 
Sbjct: 207 AGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEA 266

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
             V  L+      ++  G  + E +  V G+   +   A ++D+ ++ G V  A++  + 
Sbjct: 267 AIVTALSAAAQLGLLEQGKFVHEVVKRV-GMTMSVNLGAALIDMYSKCGSVAAAKEVFD- 324

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS-THVLSYNIYKEAGW 384
               +   D   W +++     +G      +++ K    G    S T V   N     G 
Sbjct: 325 ---AMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGL 381

Query: 385 DMEANKVRKLISE 397
             E  +  KL++E
Sbjct: 382 VDEGRRYFKLMAE 394


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 242/410 (59%), Gaps = 4/410 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N  K  +  +  M + G + +  T   ++ AC  LG        V  ++  +
Sbjct: 159 LICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVR-YIEDY 217

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D ++ ++L++++    ++ +A  +F     R++VT   M+  Y K  D  +AR++F
Sbjct: 218 CIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIF 277

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P+++ +SWS++++ YS+ + F + L +FRQMQ   +KP+   + SV+++CAHLGA+ 
Sbjct: 278 DQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALD 337

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH Y +R +++ + I+  +++DMY KCG    AL VF+ +  KD  +WN++I G+A
Sbjct: 338 LGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLA 397

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG  K+SL LF  M+  G +P   TF+ VL  C +AK+V +GL+ FE+M  +Y +EPQ+
Sbjct: 398 NNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQM 457

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY CVVDLL RAG +E+A +FI E        D  VW  LL +C  +G + +   V +K
Sbjct: 458 KHYGCVVDLLGRAGQLEKALRFITEMP---IDPDPVVWRILLGSCNTHGDVAIAEIVTKK 514

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           L E+  ++   + L  N Y  A    EA  VR+ +++T ++K PGCS +E
Sbjct: 515 LNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 564



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 63/307 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG  Q++ P  ++  Y      G  P+N TFP ++KAC  +  L N G  +H H+ K 
Sbjct: 58  LIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINAL-NEGEQMHNHITKL 116

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL+  Y+    +  AR++FD+   +DVV+W +++ GY             
Sbjct: 117 GLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGY------------- 163

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                             S+ + FK++L+LF+ MQ  G+K ++  ++ V++AC  LG  +
Sbjct: 164 ------------------SQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYS 205

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH------------------------- 215
              ++  Y + Y +E +V L   +VD + + G +                          
Sbjct: 206 MADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 265

Query: 216 ------SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                 SA  +F+ I  KD  +W++MISG +       +LE+F +M ++  +P      +
Sbjct: 266 KGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIAS 325

Query: 270 VLTTCTH 276
           V+++C H
Sbjct: 326 VVSSCAH 332



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 104/213 (48%), Gaps = 7/213 (3%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D   A ++F+++       W+ ++   ++     + ++ +++ Q  GM P+      +L 
Sbjct: 36  DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 95

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA + A+ +G  +H++  +  L  ++ ++ +++ +Y+ CG++  A SVF+ +  KD  +
Sbjct: 96  ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVS 155

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA---KMVRDGLNLFE 288
           WN++I G +     K  L LF  M   G +  + T + V++ CT      M    +   E
Sbjct: 156 WNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIE 215

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           +    Y +E  +     +VD   R G ++ AEK
Sbjct: 216 D----YCIEVDVYLGNTLVDYFGRRGQLQSAEK 244


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 263/465 (56%), Gaps = 31/465 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+G+ ++   K S+  +  M   G E N +T+  L+ ACV    L   G  +H  V+  
Sbjct: 96  IIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACV-RSRLFREGEQIHGRVLVN 154

Query: 61  GFGEDPFVVSSLLEFYSLVHKMG-----TARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           G+  + +V ++L+  Y+     G      AR LFD+ PD +VV W +++ GY + GDF+ 
Sbjct: 155 GYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEMPDSNVVGWNSLLAGYVRRGDFDG 214

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR++F++MPERN  +W+ ++A +++    K  LSLF QM+  G++ ++  LV+ L+ACA 
Sbjct: 215 ARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAE 274

Query: 176 LGAITQGLWVHSYAKR----YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           LG +T G W+H Y +R     HL   V L  A++ MY+ CG +  A  VFE I  ++  +
Sbjct: 275 LGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNTVS 334

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSG---TQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
           W+++I+G A  G   +++ +F  M+ SG    +P E TF+  LT C+HA ++ DG+ LF+
Sbjct: 335 WSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQ 394

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
           +M   +GV PQ+EHY C+VDLL+RAG++ EA   IE     +   +A VWGALLS CR++
Sbjct: 395 SMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESM--PMKPNNA-VWGALLSGCRLH 451

Query: 349 GKIEVGNRVWRKLAEMGITDFSTH---------VLSYNIYKEAGWDMEANKVRKLISETG 399
              E+ + V + L+      F  H         +L  N+Y   G   +   VR+ + + G
Sbjct: 452 KNDEIVSHVAKHLS------FEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIG 505

Query: 400 MKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +KK  G S IE+NGV+  F+ G+  H     IY ++ +  + + +
Sbjct: 506 VKKPSGRSWIEINGVLCSFMVGEETHKDVNLIYEMLGNITRQTQM 550



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 15/247 (6%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           ++K+CV    L      +HA +V  GF +  ++++ LL  Y     +G+A+ +F+     
Sbjct: 33  VLKSCVSFRNLAK----IHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAP 88

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSAIMAAYSRISDFKEVLSLF 151
               W  ++ G+ +    + + ELF++M     E N  ++S +++A  R   F+E   + 
Sbjct: 89  STTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIH 148

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK----NVILATAVVDM 207
            ++   G   N     +++   A+ G    G        RY  ++    NV+   +++  
Sbjct: 149 GRVLVNGYWSNLYVRTNLINLYANGG---DGGDFDLKRARYLFDEMPDSNVVGWNSLLAG 205

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y + G    A  VF+ +  ++   W  M++G A NG  K +L LFD+M ++G +  +   
Sbjct: 206 YVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVAL 265

Query: 268 VAVLTTC 274
           VA L+ C
Sbjct: 266 VAALSAC 272



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 23/221 (10%)

Query: 166 LVSVLTACA---HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           + SVL +C    +L  I   + V  ++     +KN IL   ++ +Y   G + SA  VFE
Sbjct: 30  IFSVLKSCVSFRNLAKIHAQIVVSGFS-----QKNYIL-NHLLSLYISFGSLGSAQKVFE 83

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            I+      WN +I G   +  +KKS+ELF RM  +G +    T+  +L+ C  +++ R+
Sbjct: 84  DITAPSTTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFRE 143

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAG-----MVEEAEKFIEEKMGGLGGGDANV 337
           G  +   +  V G    L     +++L A  G      ++ A    +E        D+NV
Sbjct: 144 GEQIHGRV-LVNGYWSNLYVRTNLINLYANGGDGGDFDLKRARYLFDEM------PDSNV 196

Query: 338 --WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             W +LL+     G  +   +V+ ++ E  +  ++  V  +
Sbjct: 197 VGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGF 237


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 158/436 (36%), Positives = 247/436 (56%), Gaps = 41/436 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + DM+     P+  T   ++ AC   G +E  G  VH+ +   
Sbjct: 194 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE-LGRQVHSWIDDH 252

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L++ YS                               K G+ E A  LF
Sbjct: 253 GFGSNLKIVNALIDLYS-------------------------------KCGELETACGLF 281

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +P ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACAHLGAI 
Sbjct: 282 EGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 341

Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMY+KCG + +A  VF  I +K   +WNAMI G
Sbjct: 342 IGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 401

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  S ++F RM K+G +P + TFV +L+ C+H+ M+  G ++F +M+  Y + P
Sbjct: 402 FAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTP 461

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +LEHY C++DLL  +G+ +EAE+ I   +M      D  +W +LL AC+++G +E+G   
Sbjct: 462 KLEHYGCMIDLLGHSGLFKEAEEMINTMEM----EPDGVIWCSLLKACKMHGNVELGESF 517

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L ++   +  ++VL  NIY  AG W+  AN  R L+++ GMKK PGCS IE++ VV 
Sbjct: 518 AQNLIKIEPENPGSYVLLSNIYATAGRWNEVAN-TRALLNDKGMKKVPGCSSIEIDSVVH 576

Query: 417 EFLAGDNRHAQAGEIY 432
           EF+ GD  H +  EIY
Sbjct: 577 EFIIGDKFHPRNREIY 592



 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 210/368 (57%), Gaps = 8/368 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  ++  Y+ M+ +G  PN+YTFP L+K+C      +  G  +H HV+K 
Sbjct: 62  MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKE-GQQIHGHVLKL 120

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL+  Y    ++  A  +FD+SP RDVV++T ++ GY   G  ENA+++F
Sbjct: 121 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMF 180

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+   ++KE L LF+ M +  ++P+ES +V+V++ACA  G+I 
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D+YSKCG + +A  +FEG+  KD  +WN +I G  
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T +++L  C H   +  G  ++++ +   + GV  
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID-KRLKGVAN 359

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
                  ++D+ A+ G +E A +     +        + W A++    ++G+ +    ++
Sbjct: 360 ASSLRTSLIDMYAKCGDIEAAHQVFNSIL----HKSLSSWNAMIFGFAMHGRADASFDIF 415

Query: 359 RKLAEMGI 366
            ++ + GI
Sbjct: 416 SRMRKNGI 423



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 64/321 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K G     + +S L+EF  L             SP  D + +            
Sbjct: 9   IHAQMIKTGLHNTNYALSKLIEFCIL-------------SPHFDGLPY------------ 43

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  +FE + E N + W+ +   ++  SD    L L+  M  +G+ PN      +L +
Sbjct: 44  ---AISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM------------------------- 207
           CA   A  +G  +H +  +   + ++ + T+++ M                         
Sbjct: 101 CAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSY 160

Query: 208 ------YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                 Y+  G++ +A  +F+ I  KD  +WNAMISG A  G+ K++LELF  M+K+  +
Sbjct: 161 TALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 220

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E+T V V++ C  +  +  G  +   +   +G    L+    ++DL ++ G +E A  
Sbjct: 221 PDESTMVTVVSACAQSGSIELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKCGELETACG 279

Query: 322 FIEEKMGGLGGGDANVWGALL 342
             E    GL   D   W  L+
Sbjct: 280 LFE----GLPYKDVISWNTLI 296


>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
 gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
 gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
 gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 531

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 155/453 (34%), Positives = 237/453 (52%), Gaps = 14/453 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGP---LENFGMFVHAHV 57
           M R ++ +     ++  + DM+  G  P+N      + AC   G      N G  +HA +
Sbjct: 83  MARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALI 142

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           V  G   D FV + L+  Y    K+  +R +FD  P R  +TW  M+  Y + G  + A 
Sbjct: 143 VTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY 202

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACA 174
           ELF  MP R+ VSW+ +MA Y      +E L LFRQM       + PN   + ++L ACA
Sbjct: 203 ELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 262

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWN 233
             G +  G+WVH+Y +R  +  +  L   ++DMY KCG + +AL VFE    K D  +W 
Sbjct: 263 GAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWT 322

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            +I G+AM+G A  +L +FD M  +G  P + T V VL  C H  +V +GL  F +M A 
Sbjct: 323 TVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAK 382

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN--VWGALLSACRIYGKI 351
           + + P++EHY C++DLL R G ++EA   I          D N  +WGA LSAC+++G +
Sbjct: 383 FRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTM-----PMDPNTVIWGAFLSACKVHGNM 437

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
           E+G     +L  +   D    V+  ++Y +A   +   + R+ ++   +KK PGCS IE+
Sbjct: 438 ELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIEL 497

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
            G V EF+AG ++H Q  EI  V+      +N+
Sbjct: 498 KGEVHEFVAGGSQHPQYAEICSVLQDVEAQTNV 530



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y  +G  ++AR LF++MPE+  V  +A+  A+       + +++F  M   G+ 
Sbjct: 50  TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 109

Query: 161 PNESGLVSVLTACAHLGAIT----QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
           P+   L   L AC   G+ T     G  +H+      +E +V ++T ++ +Y +CG +  
Sbjct: 110 PDNVALAVALGACHGAGSWTARRNPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAV 169

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           +  VF+ + ++    WNAM+   A +G    + ELF  M +        ++  V+     
Sbjct: 170 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYELFLAMPRRDV----VSWNTVMAGYCV 225

Query: 277 AKMVRDGLNLFENM--SAVYGVEPQLEHYACVVDLLARAGMVE 317
           A   R+ L LF  M   +   V P +   + ++   A AG +E
Sbjct: 226 AGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLE 268


>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
          Length = 529

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 147/413 (35%), Positives = 248/413 (60%), Gaps = 5/413 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y++      +V   + M   G  P+  T    + AC   G L N G  +H+++   
Sbjct: 118 MMRCYIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDL-NLGRRIHSYMDGV 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG    V ++LL+ Y+    +  A  +F++ P+R++++WT +V GYG  G  + AR  F
Sbjct: 177 -FGFSLPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFF 235

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +  +++ + W++++ A  +   F+E L LFR MQ   ++P++  +V++LT CA++GA+ 
Sbjct: 236 YQCTQKDLILWTSMINACVQHGSFEEALILFRDMQLQRVEPDKFTVVTLLTCCANIGALD 295

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG W+H YA+  +++ + +L TA+++MYSKCGHV  +L +F  +  KDA AW A+I G+A
Sbjct: 296 QGEWIHQYAESRNMKIDAVLGTALIEMYSKCGHVDKSLQIFGRMQGKDAAAWTAIICGLA 355

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A K+LELF+ M +S T+P   TF+ VL+ C H  +V +G   F+ M  VY +EP++
Sbjct: 356 TNGQASKALELFEEMQRSKTKPDGITFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRI 415

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+V+LL  AG++ EAEK I +    +      ++GALL+AC+  G +E+   + ++
Sbjct: 416 EHYSCLVNLLGHAGLLYEAEKLITDM--PVNNDTMPLFGALLTACKANGNVEMSEWLTKR 473

Query: 361 LAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           +A+   + +   +VL  N+Y  A    EA +VR  ++   +KK  GCS+IEV 
Sbjct: 474 IAKEDCSPNPDVNVLMSNVYATASRWEEAIRVRSKMTNPAVKKTAGCSMIEVK 526



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 139/303 (45%), Gaps = 38/303 (12%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y D+   G   ++YT+P +++A   +  L   G  VHA  VK GF  D +   SL+E Y+
Sbjct: 34  YYDLRARGLAADSYTYPFVLRAIGTM-KLSVEGRKVHAAAVKTGFRWDAYTACSLMEMYT 92

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           +                               +G  ++AR +F++MP+R  V W+ +M  
Sbjct: 93  M-------------------------------LGRADSARRVFDEMPQRFLVLWNMMMRC 121

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y R   F   ++L  QM+  G  P+   LV+ +TAC+  G +  G  +HSY        +
Sbjct: 122 YIRCGRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGV-FGFS 180

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +A A++DMY+K G++  A+ +FE +  ++  +W  ++SG  + G   K+   F +   
Sbjct: 181 LPVANALLDMYTKNGYLEEAVKMFEQMPERNIISWTILVSGYGIAGQLDKARVFFYQC-- 238

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
             TQ     + +++  C       + L LF +M  +  VEP       ++   A  G ++
Sbjct: 239 --TQKDLILWTSMINACVQHGSFEEALILFRDMQ-LQRVEPDKFTVVTLLTCCANIGALD 295

Query: 318 EAE 320
           + E
Sbjct: 296 QGE 298



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 100/230 (43%), Gaps = 9/230 (3%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP R+    + ++   +R   F  V++++  ++  G+  +      VL A   +    +G
Sbjct: 9   MPLRDC---NVLIRTLARRGSFSRVMAVYYDLRARGLAADSYTYPFVLRAIGTMKLSVEG 65

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             VH+ A +     +   A ++++MY+  G   SA  VF+ +  +    WN M+      
Sbjct: 66  RKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVFDEMPQRFLVLWNMMMRCYIRC 125

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G    ++ L  +M   G  P   T V  +T C+ A  +  G  +   M  V+G    + +
Sbjct: 126 GRFTAAVALAVQMESGGATPDRVTLVTAVTACSRAGDLNLGRRIHSYMDGVFGFSLPVAN 185

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
              ++D+  + G +EEA K  E+    +   +   W  L+S   I G+++
Sbjct: 186 --ALLDMYTKNGYLEEAVKMFEQ----MPERNIISWTILVSGYGIAGQLD 229


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 160/466 (34%), Positives = 251/466 (53%), Gaps = 39/466 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG  + +  + SV  ++ ML +   P+  T P ++K+   L  +   G  +H  V+K 
Sbjct: 109 LIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDV-GLGRCLHGGVMKL 167

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP--------------------------- 93
           G   D FV  SL++ Y  + ++G    LFD+SP                           
Sbjct: 168 GLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKA 227

Query: 94  --------DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                   +R+  +W ++++G+ + GD + ARELF +MPE+N VSW+ ++  +S+  D +
Sbjct: 228 ASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHE 287

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + LS+F +M E G++PN+  +VS L AC  +GA+  G  +H+Y      + N  + TA+V
Sbjct: 288 KALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALV 347

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY+KCG++ SA  VF     KD   W+ MI G A++G   ++L+ F +M  +G  P E 
Sbjct: 348 DMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEV 407

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            F+A+LT C+H+  V  GLN FE+M   Y +EP ++HY  +VDLL RAG ++EA  FI+ 
Sbjct: 408 IFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQS 467

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385
                   D  +WGAL  ACR +  IE+      KL ++      ++V   N+Y   G  
Sbjct: 468 MP---INPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRW 524

Query: 386 MEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
            +  +VR L+   G++K PG S IEV G V  F+AGD+ H +A EI
Sbjct: 525 EDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEI 570


>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g08510-like [Glycine max]
          Length = 474

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 159/424 (37%), Positives = 241/424 (56%), Gaps = 8/424 (1%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           GF PN +TF  L  AC  L    + G  +H H +K GF  D F  ++LL+ Y+ V  +  
Sbjct: 42  GFLPNQHTFNFLFSACTSLS-SSSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVGALEL 100

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR LFD+ P R V  W  M+ G  + GD + A ELF  MP RN V W+ +++ YS    +
Sbjct: 101 ARKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQY 160

Query: 145 KEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            + L LF  M QE G+ PN   LVS+L ACA+L A+  G  V +YA++    KN   + A
Sbjct: 161 DKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNA 220

Query: 204 VVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           V++MY KCG + +A  VF  I S ++  +WN+M+ G+A++G+  K+LEL+D+M+  GT P
Sbjct: 221 VLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSP 280

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            + TFV +L  CT   MV+ G ++F++ +  + + P+LEHY C+VDLL RAG + EA + 
Sbjct: 281 DDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEV 340

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I+         D+ +WGALL AC  +G +E+       L  +   +   +V+  NIY  A
Sbjct: 341 IQSMS---MKPDSVIWGALLGACSFHGNVELAEIAAESLFVLEPWNPGNYVILSNIYASA 397

Query: 383 G-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441
           G WD  A K+RK++  + + K  G S IE    + +F+  D  H ++ EI+ ++    +M
Sbjct: 398 GQWDGVA-KLRKVMKGSKITKSAGHSFIEEGAQLHKFIVKDRSHPKSNEIFALLDGVYEM 456

Query: 442 SNLV 445
             L 
Sbjct: 457 VKLT 460



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 5/170 (2%)

Query: 131 WSAIMAAYSRISDFK-EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           ++ ++ AYS     +    SL+ Q++  G  PN+     + +AC  L + + G  +H++ 
Sbjct: 14  YNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQMLHTHF 73

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +   E ++  ATA++DMY+K G +  A  +F+ +  +    WNAM++G+A  GD   +L
Sbjct: 74  IKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGAL 133

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           ELF  M      P  T    +++  +  K     L LF  M    G+ P 
Sbjct: 134 ELFXSMPSRNVVPWTT----MISGYSWNKQYDKALGLFLGMEQEKGIMPN 179



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 105/250 (42%), Gaps = 36/250 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY        ++  +L M  + G  PN  T   ++ AC  L  LE  G  V A+  K
Sbjct: 150 MISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALE-IGQRVEAYARK 208

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENARE 118
            GF ++ +  +++LE Y    K+  A  +F++    R++ +W +MV G    G+   A E
Sbjct: 209 NGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLAVHGECCKALE 268

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           L++                               QM   G  P++   V +L AC   G 
Sbjct: 269 LYD-------------------------------QMLGEGTSPDDVTFVGLLLACTQGGM 297

Query: 179 ITQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           + +G  +  S    +++   +     +VD+  + G +  A  V + +S K D+  W A++
Sbjct: 298 VKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALL 357

Query: 237 SGVAMNGDAK 246
              + +G+ +
Sbjct: 358 GACSFHGNVE 367


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  284 bits (726), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 154/388 (39%), Positives = 231/388 (59%), Gaps = 6/388 (1%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYG 108
           G  VHA  VK G   D +V ++ + FY +   +   R +FD+ P  RDVVTW  ++ GY 
Sbjct: 151 GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYV 210

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           + G    ARE+F+ MP R+ VSWS ++  Y +  + +  L +F+ M   G+K NE+ +V+
Sbjct: 211 RAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVT 270

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
            L+A A LG + QG +VH   KR  +  +V L  A++DMYSKCG V +A  VF+ +  +D
Sbjct: 271 ALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRD 330

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             AWN+MI G+A +G    +++LF++ V  G  PT  TFV VL  C+   +V +G   F+
Sbjct: 331 VFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFK 390

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M+  Y +E ++EHY C+VDLL+RAG+V+EA + IE   G     D  +WG +LSAC+ +
Sbjct: 391 LMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIE---GMRIPPDPVLWGTILSACKRH 447

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCS 407
           G +++G  V  KL E+       +VL  +IY +A  WD E  KVRKL+S  G  K  G S
Sbjct: 448 GLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWD-EVRKVRKLMSNRGTSKSAGWS 506

Query: 408 VIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           ++E +G+V +FL GD  H  +  IY ++
Sbjct: 507 LMEAHGIVHKFLVGDMNHKDSARIYNML 534



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 60/313 (19%), Positives = 116/313 (37%), Gaps = 62/313 (19%)

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF ++P RN  S++ ++A+ S   D                +P  +G ++         
Sbjct: 111 RLFPRLPRRNPHSFTFLLASLSNHLD---------------TEPAAAGSIA--------- 146

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS--------------------- 216
           +   G  VH+ A +     ++ +  A +  Y  CG V +                     
Sbjct: 147 SRFMGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVL 206

Query: 217 -----------ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
                      A  VF+G+  +D  +W+ +I G    G+ + +L +F  MV  G +  E 
Sbjct: 207 AGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEA 266

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
             V  L+      ++  G  + E +  V G+   +   A ++D+ ++ G V  A++  + 
Sbjct: 267 AIVTALSAAAQLGLLEQGKFVHEVVKRV-GMTMSVNLGAALIDMYSKCGSVAAAKEVFD- 324

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS-THVLSYNIYKEAGW 384
               +   D   W +++     +G      +++ K    G    S T V   N     G 
Sbjct: 325 ---AMPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGL 381

Query: 385 DMEANKVRKLISE 397
             E  +  KL++E
Sbjct: 382 VDEGRRYFKLMAE 394


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 240/416 (57%), Gaps = 37/416 (8%)

Query: 53  VHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDV-------------- 97
           +HA  +K GF   D FV ++L+E Y+   +   ARA FD++P RDV              
Sbjct: 61  LHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRG 120

Query: 98  -----------------VTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                            V+W TM+ GY   G+ + ARE+F  M +R+A SWS++M+AY++
Sbjct: 121 EVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTK 180

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               K+ L L+R+M+   + P+ + +VSVL+AC+ +GA+  G  VH + +   +E +V L
Sbjct: 181 GRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKL 240

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA++DMY+KCG + +++ VF  +  KD   W++MI G+A +G    +L LF RM+  G 
Sbjct: 241 GTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGL 300

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           QP E TF+ VL +CTH  +V DG   F +MS V+GV P+++HY C+VDLL R+G +EEA+
Sbjct: 301 QPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAK 360

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           + I +        DA +W ALL ACRIY  +EV      KL  +       +VL  NIY 
Sbjct: 361 QLIRDMP---FEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYA 417

Query: 381 EA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           +A  W+  A ++R+ +    +++ PG S IE    + EF++GD  H ++ EIY+++
Sbjct: 418 QANSWEGVA-EMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKML 472


>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
          Length = 475

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 245/422 (58%), Gaps = 8/422 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EP + TF  L+  C       E  G  +H +  K G   +  +V +++L  
Sbjct: 34  FADMRLAGVEPTHITFIALLSGCGDFPSGSETLGDLLHGYACKLGLDRNHVMVGTAILGM 93

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS   ++  AR +FD   D++ VTW TM+DGY + G   NA +LF+KMPE + +SW+A++
Sbjct: 94  YSKRGRVKKARLVFDYMDDKNSVTWNTMIDGYMRSGQVHNAVKLFDKMPEPDLISWTAMV 153

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E L  FR+MQ  G+KP+   +++ L AC +LGA++ GLWVH Y      +
Sbjct: 154 NGFVKKGFHEEALVWFREMQISGVKPDYVAIIAALNACTNLGALSLGLWVHRYVMSQDFK 213

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 214 NNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 273

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G +P   TF   LT C+H  +V +GL  F++M   Y + P++EHY C+VDL +RAG 
Sbjct: 274 QEEGFKPNAVTFTGALTACSHVGLVDEGLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGR 333

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVL 374
           +E+A K ++         +  V G+LL+ACR +G   V   R+ + L+++ +   S +V+
Sbjct: 334 LEDALKVVQSMP---MKPNEVVIGSLLAACRNHGNNTVLAERLMKHLSDLNVKSHSNYVI 390

Query: 375 SYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
             N+Y  +A W+  A+++R+ +   G+KK+PG S IE++     F+AGD+ H +   I  
Sbjct: 391 LSNMYAADAKWE-GASRMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETAYIRE 449

Query: 434 VI 435
           V+
Sbjct: 450 VL 451


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  283 bits (725), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 250/446 (56%), Gaps = 6/446 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q       +  Y +M   G EP+      ++ AC   G L ++G  +H  +   
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNL-SYGKAIHQFIKDN 246

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF     + +SL+  Y+    M  AR ++D+ P + +V  T M+ GY K+G  ++AR +F
Sbjct: 247 GFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIF 306

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M E++ V WSA+++ Y+      E L LF +MQ   + P++  ++SV++ACA++GA+ 
Sbjct: 307 DRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALV 366

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           Q  W+H+YA +    + + +  A++DMY+KCG++  A  VFE +  K+  +W++MI+  A
Sbjct: 367 QAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFA 426

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+GDA  ++ LF RM +   +P   TF+ VL  C+HA +V +G   F +M   + + PQ 
Sbjct: 427 MHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQR 486

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDL  RA  + +A + IE         +  +WG+L+SAC+ +G+IE+G     +
Sbjct: 487 EHYGCMVDLYCRANHLRKAMELIETMP---FPPNVIIWGSLMSACQNHGEIELGEFAATR 543

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+        V+  NIY KE  WD +   VRKL+   G+ K+  CS IEVN  V  F+
Sbjct: 544 LLELEPDHDGALVVLSNIYAKEKRWD-DVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFM 602

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNLV 445
             D  H Q+ EIY+ + + +    LV
Sbjct: 603 MADRYHKQSDEIYKKLDAVVSQLKLV 628



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 179/398 (44%), Gaps = 69/398 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R + +   P+ ++  YL +   GF  + ++FPPL+KA   L  L N G+ +H    KF
Sbjct: 86  LLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSAL-NLGLEIHGLASKF 144

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G F  DPF+ S+L+  Y+   ++  AR LFDK   RDVVTW  M+DGY +   +++    
Sbjct: 145 GFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDH---- 200

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                      VL L+ +M+  G +P+   L +VL+ACAH G +
Sbjct: 201 ---------------------------VLKLYEEMKTSGTEPDAIILCTVLSACAHAGNL 233

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN------------- 226
           + G  +H + K         + T++V+MY+ CG +H A  V++ + +             
Sbjct: 234 SYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGY 293

Query: 227 ------------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                             KD   W+AMISG A +    ++L+LF+ M +    P + T +
Sbjct: 294 AKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITML 353

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           +V++ C +   +          +   G    L     ++D+ A+ G + +A +  E    
Sbjct: 354 SVISACANVGALVQA-KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFE---- 408

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +   +   W ++++A  ++G  +    ++ ++ E  I
Sbjct: 409 NMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNI 446



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 35/262 (13%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            + A  LF  +P       + ++  +SR    +  LSL+  ++  G   +      +L A
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124

Query: 173 CAHLGAITQGLWVHSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            + L A+  GL +H  A ++     +  + +A++ MY+ CG +  A  +F+ +S++D   
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA----------KMVR 281
           WN MI G + N      L+L++ M  SGT+P       VL+ C HA          + ++
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIK 244

Query: 282 DG------------LNLFENMSAVY---GVEPQLEHYACVVDL-----LARAGMVEEAEK 321
           D             +N++ N  A++    V  QL     VV        A+ GMV++A +
Sbjct: 245 DNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDA-R 303

Query: 322 FIEEKMGGLGGGDANVWGALLS 343
           FI ++M      D   W A++S
Sbjct: 304 FIFDRM---VEKDLVCWSAMIS 322


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  283 bits (725), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 260/443 (58%), Gaps = 39/443 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +  F K ++  +++M + GFEP+  T   ++ AC  LG L   G +V       
Sbjct: 200 MISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDL-GLGRWVEG----- 253

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                 FV+   +E  S    MG+A                 ++D YGK GD  +AR +F
Sbjct: 254 ------FVLEKKMEVNSY---MGSA-----------------LIDMYGKCGDLISARRVF 287

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP ++ V+W+AI+  Y++     E + LF  M+E G  P+   ++ VL+AC+ +GA+ 
Sbjct: 288 DSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALD 347

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WV ++A    L+ +V +A+A++DMY+KCG +  A+ VFE + +K+  +WNAMIS +A
Sbjct: 348 LGKWVETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALA 407

Query: 241 MNGDAKKSLELFDRMVK-SGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            +G A+++L LF RM K +GT QP + TF+ VL+ C HA +V +G  LFE+M+  +G+ P
Sbjct: 408 FHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQLFESMNLSFGLVP 467

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           ++EHY+C+VDL ARAG++ EA   I +KM   G  D  V G+LL AC+     +VG RV 
Sbjct: 468 KVEHYSCMVDLCARAGLLYEAWDLI-KKMP--GKPDEIVLGSLLGACQRRRNADVGERVI 524

Query: 359 RKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           +   EM +++   +V+S  IY     WD ++ K+R L+ + G+ K PGCS I++   V E
Sbjct: 525 QLFLEMELSNSGNYVISSKIYANMRRWD-DSAKMRVLMRQCGVSKTPGCSWIDIGAHVHE 583

Query: 418 FLAGDNRHAQAGEIYRVIHSFLK 440
           F AGD+ H  +  IY++++  +K
Sbjct: 584 FHAGDSLHNHSMNIYQLLNEEMK 606



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 187/366 (51%), Gaps = 42/366 (11%)

Query: 1   MIRGYMQANFPKLSVFC---YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
           M+RG   A   K   FC   Y  +  +G + NN+T+P L  AC  +  L + G   H  V
Sbjct: 98  MLRGL--ATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVH-GKIGHCLV 154

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
            K G   D +V  SL+  Y+   +MG A                               R
Sbjct: 155 FKAGLDGDEYVNHSLITMYARCGEMGFA-------------------------------R 183

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ++F++M +R+ VSW+++++ YS++   KE + LF +M+E G +P+E  LVSVL AC  LG
Sbjct: 184 KVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLG 243

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G WV  +     +E N  + +A++DMY KCG + SA  VF+ + NKD   WNA+I+
Sbjct: 244 DLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIIT 303

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G A NG + +++ LF+ M ++G  P   T + VL+ C+    +  G    E  ++  G++
Sbjct: 304 GYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLG-KWVETHASEKGLQ 362

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             +   + ++D+ A+ G +++A +  E     +   +   W A++SA   +G+ +    +
Sbjct: 363 HDVYVASALIDMYAKCGSLDDAVRVFES----MPHKNEVSWNAMISALAFHGQAQEALSL 418

Query: 358 WRKLAE 363
           +R++++
Sbjct: 419 FRRMSK 424


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 139/367 (37%), Positives = 228/367 (62%), Gaps = 5/367 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +++L+ Y    +M  A  LF+K P+R+VV+W+TMV GY K GD E AR LF+KMP +N V
Sbjct: 224 NTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLV 283

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           +W+ I++ ++     KE  +L+ QM+  G+KP++  L+S+L ACA  G +  G  VH+  
Sbjct: 284 TWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASI 343

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
           K+  ++ +V ++ A+VDMY+KCG V  ALS+F  +S +D  +WN M+ G+AM+G  +K++
Sbjct: 344 KKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAI 403

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           +LF +M + G +P + T +A+L  CTHA  V  GL+ F +M   +G+ P +EHY C++DL
Sbjct: 404 QLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDL 463

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
           L R G +EEA + ++     +   D  +WG LL ACR++  + +  +V  +L  +  +D 
Sbjct: 464 LGRGGRLEEAFRLVQSM--PMEPNDV-IWGTLLGACRVHNAVPLAEKVLDRLITLEQSDP 520

Query: 370 STHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
             + +  NI+  AG W+  AN +R  +  TG++K  G S IE++  V EF   D  H + 
Sbjct: 521 GNYSMLSNIFAAAGDWNSVAN-MRLQMKSTGVQKPSGASSIELDDEVHEFTVFDKSHPET 579

Query: 429 GEIYRVI 435
            +IY+++
Sbjct: 580 DKIYQIL 586



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 177/368 (48%), Gaps = 49/368 (13%)

Query: 1   MIRGYMQANFPKLSVFC-YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR ++Q N   L  F  + DM   G   +N+T+P L+KAC   G L    M +H HV K
Sbjct: 92  LIRAHVQ-NSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQM-IHCHVEK 149

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGT--ARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +GF  D FV +SL++ YS    +G   A  LF +  ++D+V+W +M+ G  K GD   AR
Sbjct: 150 YGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRAR 209

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF++M ER+AVSW+ I+  Y +  +  +  +LF +M                       
Sbjct: 210 KLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKMP---------------------- 247

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
                            E+NV+  + +V  Y K G +  A  +F+ +  K+   W  +IS
Sbjct: 248 -----------------ERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIIS 290

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G A  G AK++  L+++M  +G +P + T +++L  C  + ++  G  +  ++  +  ++
Sbjct: 291 GFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIR-IK 349

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             +     +VD+ A+ G V++A     E    +   D   W  +L    ++G  E   ++
Sbjct: 350 CSVNVSNALVDMYAKCGRVDKALSIFNE----MSMRDLVSWNCMLQGLAMHGHGEKAIQL 405

Query: 358 WRKLAEMG 365
           + K+ + G
Sbjct: 406 FSKMQQEG 413



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 164/393 (41%), Gaps = 58/393 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA ++K     D +V   L+  +SL H+M  A  +F++  D +V  + T++  +     
Sbjct: 42  VHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAH----- 96

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            +N++ L                          +  + F  MQ+ G+  +      +L A
Sbjct: 97  VQNSQSL--------------------------KAFATFFDMQKNGLFADNFTYPFLLKA 130

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--HVHSALSVFEGISNKDAG 230
           C   G +     +H + ++Y    ++ +  +++D YSKCG   V+ A+ +F  +  KD  
Sbjct: 131 CNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLV 190

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN+MI G+   GD  ++ +LFD M +        ++  +L     A  +    NLFE M
Sbjct: 191 SWNSMIGGLVKAGDLGRARKLFDEMAERDA----VSWNTILDGYVKAGEMSQAFNLFEKM 246

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                 E  +  ++ +V    + G +E A    ++    +   +   W  ++S     G 
Sbjct: 247 P-----ERNVVSWSTMVSGYCKTGDMEMARMLFDK----MPFKNLVTWTIIISGFAEKGL 297

Query: 351 IEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
            +    ++ ++   G+  D  T +       E+G  +   KV   I +  +K    CSV 
Sbjct: 298 AKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIK----CSVN 353

Query: 410 EVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMS 442
             N +V+ +       A+ G + + +  F +MS
Sbjct: 354 VSNALVDMY-------AKCGRVDKALSIFNEMS 379


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 250/442 (56%), Gaps = 12/442 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q      ++  ++ M+D G EP+  T   ++ AC  L  L+  G+ +HA VVK 
Sbjct: 219 LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKE-GLQIHARVVKT 277

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             F +D  + ++L++ Y+   K+  AR +FD+   R+VV+ T+MV GY +    + AR +
Sbjct: 278 NKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFM 337

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F KM +RN VSW+A++A Y++  + +E L LFR ++   + P      ++L+ACA+L  +
Sbjct: 338 FSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADL 397

Query: 180 TQGLWVHSYAKRYHL------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
             G   H++  +         E ++ +  +++DMY KCG +     VFE +  +D  +WN
Sbjct: 398 LLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWN 457

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           A+I G A NG   ++L++F +M+  G +P   T + VL  C+HA +V +G + F +M   
Sbjct: 458 AIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE- 516

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+ P  +HY C+VDLL RAG + EA+  IE         DA VWG+LL+AC+++G IE+
Sbjct: 517 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIE---AMPVNPDAVVWGSLLAACKVHGNIEM 573

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G     KL E+   +   +VL  N+Y E G   +  +VRKL+ + G+ K+PGCS IEV  
Sbjct: 574 GKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVES 633

Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
            V  FL  D  H    +IY V+
Sbjct: 634 RVHVFLVKDKSHPHRKQIYSVL 655



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 152/300 (50%), Gaps = 1/300 (0%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
           + PN+  F  L+ +C+         + VHA ++   F  + F+ + L++ Y     +  A
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRL-VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDA 69

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P R+  TW +++    K G  + A  LF  MPE +  SW+++++ +++   F+
Sbjct: 70  RKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFE 129

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E L  F +M       NE    S L+ACA L  +  G  VH+   +     +V + +A++
Sbjct: 130 ESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALI 189

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMYSKCG V  A  VF G+  ++   WN++I+    NG A ++LE+F RM+ SG +P E 
Sbjct: 190 DMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEV 249

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T  +V++ C     +++GL +   +         L     +VD+ A+   V EA +  + 
Sbjct: 250 TLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDR 309



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 169/385 (43%), Gaps = 85/385 (22%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G+ Q +  + S+  ++ M    F  N Y+F   + AC  L  L N G  VHA V K 
Sbjct: 118 MVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDL-NMGTQVHALVSKS 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            +  D ++ S+L++ YS    +  A  +F    +R++VTW +++  Y             
Sbjct: 177 RYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCY------------- 223

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
               E+N  +               E L +F +M + G++P+E  L SV++ACA L A+ 
Sbjct: 224 ----EQNGPA--------------SEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK 265

Query: 181 QGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-------------- 225
           +GL +H+   K      +++L  A+VDMY+KC  V+ A  VF+ +S              
Sbjct: 266 EGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGY 325

Query: 226 -----------------NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                             ++  +WNA+I+G   NG+ +++L LF  + +    PT  TF 
Sbjct: 326 ARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFG 385

Query: 269 AVLTTC-----------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            +L+ C            H  +++ G   FE  S   G E  +     ++D+  + G +E
Sbjct: 386 NLLSACANLADLLLGRQAHTHVLKQG---FEFQS---GAESDIFVGNSLIDMYMKCGSIE 439

Query: 318 EAEKFIEEKMGGLGGGDANVWGALL 342
           +  +  E+    +   D   W A++
Sbjct: 440 DGSRVFEK----MKERDCVSWNAII 460


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/449 (34%), Positives = 252/449 (56%), Gaps = 16/449 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF-----VHA 55
           MI GY++    + +   +  M  MG + + YT+  LI AC      E  GMF     VH 
Sbjct: 254 MISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCN--EKMGMFNCGRQVHG 311

Query: 56  HVVKFGF-GEDPFVVS---SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           ++++        FV+S   +L+ FY+   +M  AR +FDK P RD+++W  ++ GY    
Sbjct: 312 YILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQ 371

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
             E A  +F +MPERN ++W+ +++  ++    +E L LF QM+  G++P +      +T
Sbjct: 372 RIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAIT 431

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           AC+ LG++  G  +HS   R   +  +    A++ MYS+CG V SA SVF  +   D+ +
Sbjct: 432 ACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVS 491

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WNAMI+ +A +G   K++ELF++M+K    P   TF+ +LT C HA ++++G + F+ M 
Sbjct: 492 WNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMC 551

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
             YG+ P  +HYA ++DLL RAGM  +A+  I+      G   A +W ALL+ CRI+G +
Sbjct: 552 TRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAG---APIWEALLAGCRIHGNM 608

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIE 410
           E+G +   +L E+      T+++  N+Y   G WD E  +VR L+ E G+KK+PGCS +E
Sbjct: 609 ELGIQAADRLLELIPGQDGTYIILSNMYAALGQWD-EVARVRLLMRERGVKKEPGCSWVE 667

Query: 411 VNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           V  +V  FL  D RH +   +Y  +   +
Sbjct: 668 VENMVHVFLVDDARHPEVQAVYTYLQQLV 696



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 176/399 (44%), Gaps = 55/399 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y   N    ++  ++ M   GF P+ +TF  ++ A  ++   E     +H  V+K 
Sbjct: 110 MITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKL 169

Query: 61  GFGEDPFVVSSLLEFY------SLVHK---MGTARALFDKSPDRDVV--TWTTMVDGYGK 109
           G    P V ++LL  Y       LV     M +AR +FD++P   +   +WTTM+ GY +
Sbjct: 170 GTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVR 229

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
             D   AREL + +     V+W+A+++ Y R   ++E    FR+M  +G++ +E    S+
Sbjct: 230 NDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSL 289

Query: 170 LTACA----HLGAITQGLWVHSYAKRYHLE------------------------------ 195
           ++AC      +G    G  VH Y  R  +E                              
Sbjct: 290 ISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVF 349

Query: 196 -----KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
                +++I   AV+  Y     +  A S+F  +  ++   W  MISG+A NG  ++ L+
Sbjct: 350 DKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLK 409

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           LF++M   G +P +  F   +T C+    + +G  +   +  + G +  L     ++ + 
Sbjct: 410 LFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRL-GHDSGLSAGNALITMY 468

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +R G+VE AE         +   D+  W A+++A   +G
Sbjct: 469 SRCGVVESAESVFLT----MPYVDSVSWNAMIAALAQHG 503



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 169/389 (43%), Gaps = 60/389 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHAH++  GF  + F+++ L+  Y     +  AR LFDK P  D+V  TT++  Y   G+
Sbjct: 27  VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGN 86

Query: 113 FENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
            + A++LF   P   R+ VS++A++ AYS  +D    L+LF QM+  G  P+     SVL
Sbjct: 87  VKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVL 146

Query: 171 TA--------------------------------------CAHLGAITQGLWVHSYAKRY 192
           +A                                      C     + +   + + A++ 
Sbjct: 147 SALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKV 206

Query: 193 HLE--KNVILA---TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
             E  KN I     T ++  Y +   + +A  + +G++     AWNAMISG    G  ++
Sbjct: 207 FDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEE 266

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG------VEPQLE 301
           + + F RM   G Q  E T+ ++++ C       + + +F     V+G      VEP   
Sbjct: 267 AFDTFRRMHSMGIQEDEYTYTSLISACGSCN---EKMGMFNCGRQVHGYILRTVVEPS-H 322

Query: 302 HYACVVDLLARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           H+   V+  A      + ++ IE +     +   D   W A+LS      +IE  N ++ 
Sbjct: 323 HFVLSVN-NALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFS 381

Query: 360 KLAEMGITDFSTHV--LSYNIYKEAGWDM 386
           ++ E  +  ++  +  L+ N + E G  +
Sbjct: 382 EMPERNVLTWTVMISGLAQNGFGEEGLKL 410


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 247/437 (56%), Gaps = 5/437 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q+ + + ++  +  M+  GF+PN   F   + A   L  L + G+ +H HV K 
Sbjct: 287 MIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRAL-SAGINIHGHVTKI 345

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  +D F+ SSL++ Y    K    R +FD   +++VV W +MV GY   G  E   ELF
Sbjct: 346 GIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELF 405

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +PE+N  SW  I+A Y      ++VL +F  +   G  PN+S   SVL ACA + ++ 
Sbjct: 406 ELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLD 465

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ VH    +  ++ ++ + TA+ DMY+KCG + S+  VFE +  K+  +W  MI G+A
Sbjct: 466 KGMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLA 525

Query: 241 MNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            +G A +SL LF+ M + S   P E   ++VL  C+H  +V  GL  F +M  VYG++P+
Sbjct: 526 ESGFAVESLILFEEMERTSEVAPNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPK 585

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HY CVVDLL+R+G + EAE+FI          +AN W ALLS C+ Y   ++  R  +
Sbjct: 586 GKHYTCVVDLLSRSGRLYEAEEFIRTIP---FQPEANAWAALLSGCKKYKDEKIAERTAK 642

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL ++   + + +VL  NIY  AG  ++ + +RKL+ E G+KK  GCS +EV   V  F 
Sbjct: 643 KLWQLAENNSAGYVLLSNIYASAGRWIDVSNIRKLMREKGLKKSGGCSWVEVRNQVHSFY 702

Query: 420 AGDNRHAQAGEIYRVIH 436
           + D  H+Q+ EIY  + 
Sbjct: 703 SEDGSHSQSDEIYGTLQ 719



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 180/347 (51%), Gaps = 35/347 (10%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           NF  L +F    +L+ G  PN+ TF  +++AC  LG     GM +   VVK GF     V
Sbjct: 165 NFEALKLF--FRLLESGVRPNDVTFTSVVRACGELGDF-GLGMSILGLVVKAGFEHYLSV 221

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            +SL+     + ++  AR +FD+   RDVV+WT ++D Y + GD   AR +F++MPERN 
Sbjct: 222 SNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPERNE 281

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           +SWSA++A YS+    +E L LF +M + G KPN S     L+A A L A++ G+ +H +
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGH 341

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG----- 243
             +  ++K+V + ++++D+Y KCG       VF+ I  K+   WN+M+ G ++NG     
Sbjct: 342 VTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEX 401

Query: 244 --------------------------DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
                                       +K LE+F+ ++ SG  P ++TF +VL  C   
Sbjct: 402 EELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASI 461

Query: 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             +  G+N+   +  + G++  +     + D+ A+ G +  +++  E
Sbjct: 462 ASLDKGMNVHGKIIKL-GIQYDIFVGTALTDMYAKCGDIGSSKQVFE 507



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 24  MGFEPNNYTFPPLIKACV-ILGPLENFGMF-----VHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  +P   +F    + CV +L    N G+      +HAH++K GF    ++   LL  Y 
Sbjct: 9   LAIDPKK-SFRAYAQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYL 67

Query: 78  LVHKMG-------------------------------TARALFDKSPDRDVVTWTTMVDG 106
              K                                  AR LFD+ P+R+ V+W+ ++ G
Sbjct: 68  NCRKFAEIDQIVKEFDGSDLVVSNCMISAYVQWGNLVQARLLFDEMPERNEVSWSALISG 127

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
             K G  E +   FE+ P +N VSW+A ++ + R     E L LF ++ E G++PN+   
Sbjct: 128 LMKYGRVEESMWYFERNPFQNVVSWTAAISGFVRNGLNFEALKLFFRLLESGVRPNDVTF 187

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLE------------------------------- 195
            SV+ AC  LG    G+ +     +   E                               
Sbjct: 188 TSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLITLSLRMGEIDLARRVFDRMEK 247

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           ++V+  TA++D Y + G +  A  +F+ +  ++  +W+AMI+  + +G A+++L+LF +M
Sbjct: 248 RDVVSWTAILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKM 307

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           V+ G +P  + F   L+     + +  G+N+  +++ + G++  +   + ++DL  + G
Sbjct: 308 VQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKI-GIDKDVFIGSSLIDLYCKCG 365


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/410 (35%), Positives = 242/410 (59%), Gaps = 4/410 (0%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            +I GY Q N  K  +  +  M + G + +  T   ++ AC  LG        V  ++  +
Sbjct: 624  LICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVR-YIEDY 682

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                D ++ ++L++++    ++ +A  +F     R++VT   M+  Y K  D  +AR++F
Sbjct: 683  CIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIF 742

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +++P+++ +SWS++++ YS+ + F + L +FRQMQ   +KP+   + SV+++CAHLGA+ 
Sbjct: 743  DQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALD 802

Query: 181  QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
             G WVH Y +R +++ + I+  +++DMY KCG    AL VF+ +  KD  +WN++I G+A
Sbjct: 803  LGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLA 862

Query: 241  MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             NG  K+SL LF  M+  G +P   TF+ VL  C +AK+V +GL+ FE+M  +Y +EPQ+
Sbjct: 863  NNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQM 922

Query: 301  EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            +HY CVVDLL RAG +E+A +FI E        D  VW  LL +C  +G + +   V +K
Sbjct: 923  KHYGCVVDLLGRAGQLEKALRFITEMP---IDPDPVVWRILLGSCNTHGDVAIAEIVTKK 979

Query: 361  LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
            L E+  ++   + L  N Y  A    EA  VR+ +++T ++K PGCS +E
Sbjct: 980  LNELEPSNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  227 bits (578), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 122/370 (32%), Positives = 213/370 (57%), Gaps = 5/370 (1%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           + Y F   +KAC  LG      M +H  VV+ GF    +V ++L+  Y L   +  +R  
Sbjct: 88  DTYAFTFALKACAGLG-WPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMA 146

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           F++ P ++ V+W  ++ G+   G+ E AR LFE+MP RN VSWS ++  Y+R     E +
Sbjct: 147 FEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAV 206

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           +LFR+M   G+ P+E  +++V+ A +++G I  G  +H Y ++  L  +V +  +++D+Y
Sbjct: 207 ALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLY 266

Query: 209 SKCGHVHSALSVF-EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           +K G + ++L VF E +  ++  +W ++ISG AM+G + K++ELF  M ++G +P   TF
Sbjct: 267 AKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITF 326

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           ++VL  C+H  +V  G+  F++M   Y + P ++H+ C++D+L RAG + EAE+ I +  
Sbjct: 327 LSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFP 386

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
             +   +A VW  LL  C  YG++E+G R  +K+  +        V+  N+  E     +
Sbjct: 387 VEV---NATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSD 443

Query: 388 ANKVRKLISE 397
           A  VRKL+ +
Sbjct: 444 AEIVRKLVDQ 453



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 142/307 (46%), Gaps = 63/307 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG  Q++ P  ++  Y      G  P+N TFP ++KAC  +  L N G  +H H+ K 
Sbjct: 523 LIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINAL-NEGEQMHNHITKL 581

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL+  Y+    +  AR++FD+   +DVV+W +++ GY             
Sbjct: 582 GLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGY------------- 628

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                             S+ + FK++L+LF+ MQ  G+K ++  ++ V++AC  LG  +
Sbjct: 629 ------------------SQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYS 670

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH------------------------- 215
              ++  Y + Y +E +V L   +VD + + G +                          
Sbjct: 671 MADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYA 730

Query: 216 ------SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                 SA  +F+ I  KD  +W++MISG +       +LE+F +M ++  +P      +
Sbjct: 731 KGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIAS 790

Query: 270 VLTTCTH 276
           V+++C H
Sbjct: 791 VVSSCAH 797



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 104/213 (48%), Gaps = 7/213 (3%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D   A ++F+++       W+ ++   ++     + ++ +++ Q  GM P+      +L 
Sbjct: 501 DLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILK 560

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA + A+ +G  +H++  +  L  ++ ++ +++ +Y+ CG++  A SVF+ +  KD  +
Sbjct: 561 ACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVS 620

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA---KMVRDGLNLFE 288
           WN++I G +     K  L LF  M   G +  + T + V++ CT      M    +   E
Sbjct: 621 WNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIE 680

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           +    Y +E  +     +VD   R G ++ AEK
Sbjct: 681 D----YCIEVDVYLGNTLVDYFGRRGQLQSAEK 709



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 105/251 (41%), Gaps = 17/251 (6%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ++F++ P      W A++ AYS     ++ L LFR  +      +       L ACA 
Sbjct: 47  AHQVFDRRP----TPWHALLKAYSHGPHPQDALQLFRHARWHAAD-DTYAFTFALKACAG 101

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LG     + +H    R   E    + TA+V++Y  CG +  +   FE +  K+A +WN +
Sbjct: 102 LGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVV 161

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A  G+ + +  LF+RM          ++  ++   T A    + + LF  M A  G
Sbjct: 162 ITGFAGWGEVEYARLLFERMPCRNV----VSWSGMIDGYTRACRPVEAVALFRRMMA-EG 216

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL--SACRIYGKIEV 353
           + P       VV  L+  G +      I E + G    +  VW   +  S   +Y KI  
Sbjct: 217 ISPSEITVLAVVPALSNVGKI-----LIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGS 271

Query: 354 GNRVWRKLAEM 364
                R   EM
Sbjct: 272 IQNSLRVFDEM 282



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 110/298 (36%), Gaps = 19/298 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+        +V  + DM   G  PN  TF  ++ AC   G +E    F  + + ++
Sbjct: 294 IISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEY 353

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTWTTMVDGYGKMGDFENAREL 119
               D      +++      ++  A  +    P + +   W T++    K G+ E     
Sbjct: 354 NINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSKYGEVEMGERT 413

Query: 120 FEKM--PER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
            +K+   ER    + V  S ++    R SD + V  L  Q   V    N   + ++    
Sbjct: 414 MKKILALEREFGGDFVVLSNMLTELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAIKR-- 471

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            H   I  GL+   YA    L    IL   +V           A  VF+ I       WN
Sbjct: 472 LHAYYIVSGLYNCHYAMSKVLRSYAILQPDLV----------FAHKVFDQIEAPTTFLWN 521

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
            +I G+A +     ++  + +    G  P   TF  +L  C     + +G  +  +++
Sbjct: 522 ILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHIT 579


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/431 (35%), Positives = 239/431 (55%), Gaps = 34/431 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ + +A     +V  +++M D+    +  T   ++ AC  LG L N G  VH+++   
Sbjct: 183 LIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDL-NLGQKVHSYI--- 238

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                    R   D   D  V     ++D Y K  D  +A ++F
Sbjct: 239 -------------------------RHYIDMKAD--VFVGNALLDMYLKCDDLNSAYKVF 271

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP +N V+W+A+++  +    ++E L  FR MQ+ G+KP+E  LV VL +CA+LG + 
Sbjct: 272 DEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLE 331

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH+Y +R H+  +  +  A++DMY+KCG +  A  VFE +  +D  ++ AMI G+A
Sbjct: 332 IGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLA 391

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G+A  + ++F  M + G +P E TF+ +L  C+H  +V +G   F  MS  Y + PQ 
Sbjct: 392 LHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQA 451

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C++DLL RAG+V+EAE+ I  KM      D    GALL ACRI+G +++G  V +K
Sbjct: 452 EHYGCMIDLLGRAGLVKEAEEII-HKME--IRPDVFACGALLGACRIHGNVDIGESVMQK 508

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   +  T++L  N+Y       +A K+RK +    M+K PGCS+IEV+GVV EF  
Sbjct: 509 LTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCSLIEVDGVVHEFRK 568

Query: 421 GDNRHAQAGEI 431
           GD  H ++  I
Sbjct: 569 GDKSHPRSKVI 579



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 177/349 (50%), Gaps = 39/349 (11%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVVSSLLEFYSL 78
           +ML +G EP+ +T P ++KA  ++  +   G  +HA  +K G  G + +V ++L+  YS+
Sbjct: 100 EMLVVGLEPDGFTIPLVLKALALIQGIRE-GQQIHARSIKTGMVGFNVYVSNTLMRLYSV 158

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
                                           G   + +++F++ P R+ VSW+ ++ A+
Sbjct: 159 C-------------------------------GSIHDVQKVFDECPHRDLVSWTTLIQAF 187

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLEKN 197
           ++   +   +  F +M ++ ++ +   LV VL+AC++LG +  G  VHSY + Y  ++ +
Sbjct: 188 TKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKAD 247

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V +  A++DMY KC  ++SA  VF+ +  K+   WNAMISG+A  G  +++L+ F  M  
Sbjct: 248 VFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQD 307

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P E T V VL +C +  ++  G  +   M   + +  +    A ++D+ A+ G ++
Sbjct: 308 KGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNA-LLDMYAKCGSID 366

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           EA +  E     +   D   + A++    ++G+     +V+ ++  +GI
Sbjct: 367 EAFRVFE----SMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGI 411



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 103/236 (43%), Gaps = 5/236 (2%)

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-K 190
           +AI+ + SR S     +    +M  VG++P+   +  VL A A +  I +G  +H+ + K
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
              +  NV ++  ++ +YS CG +H    VF+   ++D  +W  +I      G   +++E
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
            F  M     +    T V VL+ C++   +  G  +   +     ++  +     ++D+ 
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMY 258

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +   +  A K  +E    +   +   W A++S     G+       +R + + G+
Sbjct: 259 LKCDDLNSAYKVFDE----MPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGV 310


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 151/412 (36%), Positives = 234/412 (56%), Gaps = 8/412 (1%)

Query: 31  YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFD 90
           +TFP ++K+ V L  +   G  VH  +++ G   D +V +SL+  Y    ++  A  +FD
Sbjct: 135 FTFPFVLKSSVELLSVW-MGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFD 193

Query: 91  KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL 150
               RDV +W  ++ GY K G  + A  +FE+MP RN VSW+ +++ YS+    ++ LSL
Sbjct: 194 NMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSL 253

Query: 151 FRQM--QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           F +M  ++ G++PN   ++SVL ACA L  + +G  +H  A R  L  N  +  A+  MY
Sbjct: 254 FDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMY 313

Query: 209 SKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           +KCG +  A + F+ ++   K+  AWN MI+  A  G   +++  F  M+++G QP + T
Sbjct: 314 AKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDIT 373

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           F  +L+ C+H+ +V  GL  F +MS  Y + P++EHYACV DLL RAG + EA K + E 
Sbjct: 374 FTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEM 433

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386
               G    ++WG+LL+ACR +  +E+     RKL  +   +   +VL  N+Y EAG   
Sbjct: 434 PMPAG---PSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQ 490

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           E +K+R ++   G KK PGCS IE+NG    FL GD  H Q  EIY  + + 
Sbjct: 491 EVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEAL 542



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 37/222 (16%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY Q+   +  LS+F  +   D G  PN  T   ++ AC  L  LE  G  +H    
Sbjct: 237 MISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLER-GRQIHELAC 295

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK--SPDRDVVTWTTMVDGYGKMGDFENA 116
           + G   +  V+ +L   Y+    +  AR  FDK    +++++ W TM+  Y   G    A
Sbjct: 296 RMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQA 355

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
                                          +S FR+M + G++P++     +L+ C+H 
Sbjct: 356 -------------------------------VSTFREMIQAGIQPDDITFTGLLSGCSHS 384

Query: 177 GAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
           G +  GL + +  +  Y +   V     V D+  + G +  A
Sbjct: 385 GLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEA 426


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  283 bits (723), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 260/501 (51%), Gaps = 73/501 (14%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P+ ++  +  M   G  P+ YTFP ++KAC    P    G+ VHA  V+ G   D F V+
Sbjct: 94  PRAALLYFARMRRCGVRPDAYTFPAVLKACGC-APGCRAGLLVHAEAVRRGLAADLFTVN 152

Query: 71  SLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMV------------------------ 104
           +L+ FY  +  + + R +FD++    RD+V+W +MV                        
Sbjct: 153 ALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVAGYVGCGEMGLAQEMFDEMPQKDT 212

Query: 105 -------DGYGKMG--DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
                  DGYGK G    + ARELF++MPER+ V W++++  Y+R     E  SLF +M 
Sbjct: 213 FSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWNSMIDGYARHGRMDEARSLFEEMP 272

Query: 156 E-------------------------------VGMKPNESGLVSVLTACAHLGAITQGLW 184
           E                                G++P+    V  ++ACA LGA+ QG W
Sbjct: 273 ERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQGRW 332

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +HSY ++  L  +V++ TA++DMY KCG +  A+ +FE ++ +    WN MI G+  +G 
Sbjct: 333 LHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGF 392

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
              ++ LF RM        + + + +LT CTHA +V +GL +F  M   +G++P++EHY 
Sbjct: 393 GLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYG 452

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            +VDLL RAG +++A   IE            +WG+LL+ACR +  +E+      +LA++
Sbjct: 453 ALVDLLGRAGRLDQARHAIETMP---MEPTPELWGSLLAACRSHSCVELAELSVERLADL 509

Query: 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNR 424
           G  D   +VL  NIY + G   +  ++RKL+S+ GM+K  G SVIEV+G + EF+ G   
Sbjct: 510 GADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNGVGS 569

Query: 425 HAQAGEIYRVIHSFLKMSNLV 445
           +    E+Y ++ +   +SN+V
Sbjct: 570 YICKDEMYLMLWN---LSNMV 587



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 33/223 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++     K ++  +  ML  G  P+       + AC  LG LE  G ++H+++ K 
Sbjct: 282 VIDGHVSCGEAKEALEYFQSMLRCGLRPDRIAAVGAVSACAQLGALEQ-GRWLHSYLEKK 340

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y     +  A  +F+   +R VVTW  M+ G G  G   +A    
Sbjct: 341 KLLSDVVVQTALIDMYVKCGCLDLAMLIFESMAERSVVTWNVMIVGLGTHGFGLDA---- 396

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      ++LF +M+   +  ++  ++ +LTAC H G ++
Sbjct: 397 ---------------------------VTLFHRMEAESVAVDDLSVLGMLTACTHAGLVS 429

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +GL + H   K + ++  V    A+VD+  + G +  A    E
Sbjct: 430 EGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIE 472


>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]
          Length = 524

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 174/465 (37%), Positives = 255/465 (54%), Gaps = 30/465 (6%)

Query: 1   MIRGYMQAN-FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACV------ILGPLENFGMF- 52
           ++R  + A+    L +F  L  +   F PNNYTF  L+KA         L P   FG   
Sbjct: 47  LLRSLLPAHPLGALRLFPRLRRIIPDFRPNNYTFSFLLKAAADSSAPPYLEPESPFGSHA 106

Query: 53  ----VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFD---KSPDRDVVTWTTMVD 105
               +HA  V   +    +V + L+  Y+    +  AR LF     S   DV +WT+++ 
Sbjct: 107 IVPCLHALAVVLAWDAHAYVANGLIHAYATHGVLPAARRLFGGAVASRAADVCSWTSLLT 166

Query: 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
              K G  + AR LF+ MP RN V+WSA+++AY     F + + LF  M    ++PN + 
Sbjct: 167 ACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCVRPNRAA 226

Query: 166 LVSVLTACAHLGAITQGLWVHSY---AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +V VLTAC  LGA+ QG WVH+       + +  + ++ATA+VDMY+KCG + +A  VF 
Sbjct: 227 VVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSLETARQVFA 286

Query: 223 GIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
                 +D  A+ AMISG++ +G   ++++LF +M+  G +P E TF+ VLT C  A +V
Sbjct: 287 AAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQMLVEGVRPNEVTFICVLTACGRAGLV 346

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
                +F +M AV+G+EP +EHY C+VD+L RAG + +A   +E         D+ V GA
Sbjct: 347 GRAKEVFRSMGAVHGMEPGVEHYGCLVDVLGRAGQLADA---LEAVRSMPMRPDSYVLGA 403

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM--EANKVRKLISET 398
           LL+AC  +G +E G +V R LAE+G+     HV   N+Y  AGW    E  KVR+ + E 
Sbjct: 404 LLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMY--AGWGKWEEVLKVRRDMEER 461

Query: 399 GMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY---RVIHSFLK 440
            + K PGCS++EV GVV EF+AGD  H    EI    R +H  L+
Sbjct: 462 RVAKVPGCSMLEVGGVVCEFVAGDRSHPLMPEIMSASRDLHGQLR 506


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 249/451 (55%), Gaps = 47/451 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM------GFEPNNYTFPPLIKACVILGPLENFGMFVH 54
           +IRG   +  P+ +V  Y  M         G  P+  TFP +++AC  +G  E  G  VH
Sbjct: 79  LIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASET-GAQVH 137

Query: 55  AHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA----------------------------- 85
           AHVVK G   D FV ++L+  ++    +G A                             
Sbjct: 138 AHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFDGEAREDAVAWSAMISGFARRGDIG 197

Query: 86  --RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
             R LFD+SP +D+V+W  M+  Y K+GD   ARELF+  P+R+ VSW+A+++ Y R   
Sbjct: 198 AARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGS 257

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY--AKRYHLEKNVILA 201
            K+ + LF QMQ +G KP+   ++S+L+ACA  G +  G  +H +   +   +  + +L 
Sbjct: 258 HKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLG 317

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            A++DMY+KCG + SAL VF  + +K+   WN++I G+A++G   +++++F +M++   +
Sbjct: 318 NALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVK 377

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E TFVAVL  C+H  MV  G   F  M   Y +EP ++HY C+VD+L+RAG+++EA +
Sbjct: 378 PDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFE 437

Query: 322 FIEEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
           FI     G    + N  +W  LL ACRI+G++E+     ++L +         VL  NIY
Sbjct: 438 FI-----GTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDASGDFVLLSNIY 492

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
              G  + +  +RKL+ ++G+ K+ GC+V++
Sbjct: 493 ASVGEWLGSENMRKLMDDSGVNKEAGCAVVD 523



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 146/333 (43%), Gaps = 44/333 (13%)

Query: 34  PPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT--ARALFDK 91
           P L + C  L  ++     VHA +V  GF  DP  +  L+   S+  + GT  AR +FD+
Sbjct: 12  PALWRRCRSLRQIKQ----VHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDR 67

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
            P  D   + T++ G                   R+AVS  A MA +S            
Sbjct: 68  IPHPDRFMYNTLIRGAA------------HSYAPRDAVSIYARMARHSAGCGG------- 108

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
                 G++P++     VL ACA +GA   G  VH++  +   E +  +  A++ M++ C
Sbjct: 109 ------GVRPDKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATC 162

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G + +A ++F+G + +DA AW+AMISG A  GD   + ELFD        P +      +
Sbjct: 163 GDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE------SPVKDLVSWNV 216

Query: 272 TTCTHAKM--VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
               +AK+  +     LF+        +  +  +  ++    R G  ++A +  E+    
Sbjct: 217 MITAYAKLGDMAPARELFDGAP-----DRDVVSWNAMISGYVRCGSHKQAMELFEQMQAM 271

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
               D     +LLSAC   G ++ G R+ R L+
Sbjct: 272 GEKPDTVTMLSLLSACADSGDMDAGRRLHRFLS 304


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/344 (43%), Positives = 220/344 (63%), Gaps = 12/344 (3%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           M +     G  ++A  LF +MP R+ VSW++++A Y++     E L+LF QM+ VG+KP 
Sbjct: 154 MHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPT 213

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E+ +VS+L+ACAHLGA+ +GL +H+Y     +E N I+ TA+VDMY+KCG +  A  VF 
Sbjct: 214 EATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFN 273

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            + +KD  AWN +I+G+A++G  K++  LF  M ++G +P + TFVA+L+ C+HA MV +
Sbjct: 274 AMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDE 333

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN--VWGA 340
           G  L + MS+ YG+EP++EHY CV+DLLARAG++EEA + I     G    + N    GA
Sbjct: 334 GQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELI-----GTMPMEPNPCALGA 388

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETG 399
           LL  CRI+G  E+G  V ++L  +       ++L  NIY  A  WD +A KVR L+   G
Sbjct: 389 LLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWD-DARKVRNLMKVNG 447

Query: 400 MKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV---IHSFLK 440
           + K PG SVIE+ G+V  F+AGD  H ++ +IY     IH+ LK
Sbjct: 448 ISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLK 491



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 132/298 (44%), Gaps = 36/298 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q   P  ++  +  M  +G +P   T   L+ AC  LG L+  G+ +H      
Sbjct: 185 MLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDK-GLHLHT----- 238

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                 ++  + +E  S+V   GTA                 +VD Y K G    A ++F
Sbjct: 239 ------YINDNRIEVNSIV---GTA-----------------LVDMYAKCGKISLATQVF 272

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             M  ++ ++W+ I+A  +     KE   LF++M+E G++PN+   V++L+AC+H G + 
Sbjct: 273 NAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVD 332

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G   +   +  Y +E  V     V+D+ ++ G +  A+ +   +    +  A  A++ G
Sbjct: 333 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGG 392

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
             ++G+ +    +  R++    QP  +    +L+    A    D      N+  V G+
Sbjct: 393 CRIHGNFELGEMVGKRLI--NLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 448


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/380 (37%), Positives = 222/380 (58%), Gaps = 5/380 (1%)

Query: 64  EDPFVVSSLLEFYSLVHKMGT--ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
            D F   +L++ Y      G   AR LFD+  +RD+V W +M+DGY + G  + AR LFE
Sbjct: 210 RDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSMIDGYARHGRMDEARSLFE 269

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MPERN +SWS ++  + R  + KE L  F+ M   G++P+    V  ++ACA LGA+ Q
Sbjct: 270 EMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQ 329

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G W+HSY ++  +  +V++ TA++DMY KCG +  A+ +FE +  +    WN MI G+  
Sbjct: 330 GRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGT 389

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G    ++ LF RM        + + +A+LT CTHA +V +GL +F  M   +G++P++E
Sbjct: 390 HGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEGLEIFHRMKKDFGIDPKVE 449

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY  +VDLL RAG +++A   IE            +WG+LL+ACR +  +E+      +L
Sbjct: 450 HYGALVDLLGRAGRLDQARHAIETMP---MEPTPELWGSLLAACRSHSCVELAELSVERL 506

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
           A +G  D   +VL  NIY + G   +  ++RKL+S+ GM+K  G SVIEV+G + EF+ G
Sbjct: 507 ANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGRSVIEVDGEIHEFVNG 566

Query: 422 DNRHAQAGEIYRVIHSFLKM 441
              H    EIY ++ +  KM
Sbjct: 567 GGSHLCTDEIYLMLWNLSKM 586



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 35/224 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+++    K ++  +  ML  G  P+       + AC  LG LE  G ++H+++ K 
Sbjct: 282 VIDGHVRCGEAKEALEHFQSMLRCGIRPDRVAAVGAVSACAQLGALEQ-GRWLHSYLEKK 340

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y    +M  A  +F+  P+R VVTW  M+ G G  G   +A  LF
Sbjct: 341 KVLSDVVVQTALIDMYMKCGRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLF 400

Query: 121 EKM-PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            +M  ER AV                                ++  L+++LTAC H G +
Sbjct: 401 HRMEAERVAV--------------------------------DDLSLLAMLTACTHAGLV 428

Query: 180 TQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           ++GL + H   K + ++  V    A+VD+  + G +  A    E
Sbjct: 429 SEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIE 472



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 58/283 (20%)

Query: 116 ARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           A  +F ++PE   R+   W+  +  ++     +  L  F +M+  G++P+     +VL A
Sbjct: 64  ADAVFARLPEPAARDPFPWNTAIRLHAP-GRPRAALLYFARMRSCGVRPDAYTFPAVLKA 122

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK---------------------- 210
           C        GL VH+ A R  L  ++    A++  Y +                      
Sbjct: 123 CGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLV 182

Query: 211 -----------CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA--KKSLELFDRMVK 257
                      CG +  A  +F+ +  +DA +W A+I G    G A   ++ ELFD+M  
Sbjct: 183 SWNSMVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQM-- 240

Query: 258 SGTQPTETTFVA----VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
                TE   V     +     H +M  +  +LFE M      E  +  ++ V+D   R 
Sbjct: 241 -----TERDLVCWNSMIDGYARHGRM-DEARSLFEEMP-----ERNVISWSIVIDGHVRC 289

Query: 314 GMVEEA-EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           G  +EA E F      G+        GA +SAC   G +E G 
Sbjct: 290 GEAKEALEHFQSMLRCGIRPDRVAAVGA-VSACAQLGALEQGR 331


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 159/487 (32%), Positives = 262/487 (53%), Gaps = 55/487 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           +IRGY  ++ P  +V  +  M+  G  PN +T P ++KAC   G    +   + VH   +
Sbjct: 185 LIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKAC---GCKSAYWEAVLVHGLAI 241

Query: 59  KFGFGEDPFVVSSLLEFY---SLVH----------------------------------- 80
           K G G   FV ++L+  Y    L+H                                   
Sbjct: 242 KLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIEITGVKIDIIVRNA 301

Query: 81  ---------KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSW 131
                     + +A+A+FD++ +++VV+WT+M+  Y + G  E AR++F++MP +N VSW
Sbjct: 302 LXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSW 361

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           +++++ Y R   ++E L LF +M+   + P+E+ LVS+L AC+ LG +  G  +H+Y   
Sbjct: 362 NSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILS 421

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
                 V L  +++DMY+KCG V +AL +F  +  K+  +WN +I  +A++G   ++++L
Sbjct: 422 NKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKL 481

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
           F+ M   GT P E T   +L+ C+H+ +V  GL  F+ M  +Y V  ++EHYAC+VDLL 
Sbjct: 482 FEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVXREIEHYACMVDLLG 541

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           R G++ EA + I          D  VWGALL ACRI+G +E+G ++ ++L E+       
Sbjct: 542 RGGLLGEAIELIGRMP---MKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGL 598

Query: 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           +VL  NIY EA    +  K+RKL+ + G+KK    S IE++G + EF+  D RH  +  I
Sbjct: 599 YVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSI 658

Query: 432 YRVIHSF 438
           Y ++   
Sbjct: 659 YAMLDQL 665



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD + A+ +F+++P+ N   +++++  YS   D  + + LFR+M   G+ PNE  L  VL
Sbjct: 162 GDLQYAQRMFDQIPQPNKFMYNSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVL 221

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC    A  + + VH  A +  +   V +  A++ +Y  CG +H A  +F+ I++K   
Sbjct: 222 KACGCKSAYWEAVLVHGLAIKLGIGSLVFVQNALIAVYVVCGLIHCARKLFDDITDKTLV 281

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           +WN+MI    +  D      L D   K G
Sbjct: 282 SWNSMIEITGVKIDIIVRNALXDMYAKCG 310


>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
 gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
          Length = 500

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 250/434 (57%), Gaps = 9/434 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  ++  C       E  G  +H +  K G   +  +V ++++  
Sbjct: 59  FSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS   ++  AR +FD   D++ VTW TM+DGY + G  +NA ++F+KMPER+ +SW+A++
Sbjct: 119 YSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             +      +E L+ FR+MQ  G+KP+   +++ L AC +LGA++ GLWVH Y      +
Sbjct: 179 NGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFK 238

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 239 NNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 298

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            +   +P   TF   LT C+H  +V +GL  F+ M + Y + P++EHY C+VDL +RAG 
Sbjct: 299 QEERFKPDAVTFTGALTACSHVGLVEEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGR 358

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVL 374
           +E+A K ++         +  V G+LL+ACR +G   V   ++ + L ++ +   S +V+
Sbjct: 359 LEDALKLVQSMP---MKPNEVVIGSLLAACRNHGNNTVLAEKLMKHLTDLNVKSHSNYVI 415

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG---EI 431
             N+Y   G    A+K+R+ +   G+KK+PG S IE++     F+AGD+ H +     E+
Sbjct: 416 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETTNICEV 475

Query: 432 YRVIHSFLKMSNLV 445
            ++I S L++   V
Sbjct: 476 LKLISSNLRLQGCV 489



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 105/234 (44%), Gaps = 37/234 (15%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL--GAITQGLW 184
           N VSW++ +   +R     E    F  M+  G++PN    +++L+ C     G+   G  
Sbjct: 35  NTVSWTSRITLLTRNGRLAEAAKEFSDMRLAGVEPNHITFIAILSGCGDFPSGSEALGDL 94

Query: 185 VHSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           +H YA +  L++N V++ TA++ MYSK G V  A  VF+ + +K++  WN MI G   +G
Sbjct: 95  LHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGYMRSG 154

Query: 244 DAKKSLELFDRMVK-------------------------------SGTQPTETTFVAVLT 272
               + ++FD+M +                               SG +P     +A L 
Sbjct: 155 QVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQISGVKPDYVAIIAALN 214

Query: 273 TCTHAKMVRDGLNLFEN-MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            CT+   +  GL +    MS  +    ++ +   ++DL  R G VE A +  ++
Sbjct: 215 ACTNLGALSFGLWVHRYVMSQDFKNNVRVSN--SLIDLYCRCGCVEFARQVFDK 266


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 252/438 (57%), Gaps = 37/438 (8%)

Query: 1   MIRGYMQANFPKL-SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y +++  K  ++F Y  ML  G  PN Y FP ++KAC  L  L N G  VH  +VK
Sbjct: 79  IIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDL-NLGKAVHGSLVK 137

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF +D FV ++++  Y                                  G  E AR+L
Sbjct: 138 FGFDDDIFVQNTMVHMYCCCS------------------------------GGMEFARKL 167

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP+ + V+W+A++  Y+R+      + LFR+MQ  G+ P++  +VSVL+AC  LGA+
Sbjct: 168 FDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGAL 227

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+ SY ++  + K V L+ A+VDM++KCG V  AL +F  +S +   +W ++I G+
Sbjct: 228 ELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGL 287

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G   +++ LF+ M  SG  P +  F+ +L+ C+H+ +V  G   F  M+  +G+ P+
Sbjct: 288 AMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPK 347

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL+RAG+V EA +F+E         +  +W  L+SACR++G++++G  + +
Sbjct: 348 IEHYGCMVDLLSRAGLVTEALEFVERMP---IEPNPIIWRTLISACRVHGELKLGESISK 404

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L        S +VL  NIY K   W+ + +K+R  + + G++K PG ++IE++  + EF
Sbjct: 405 QLIRNEPMHESNYVLLSNIYGKMLDWE-KKSKIRVAMGKKGIQKVPGSTMIELDNEIHEF 463

Query: 419 LAGDNRHAQAGEIYRVIH 436
           + GD  H Q  EI ++++
Sbjct: 464 IVGDRSHNQYNEIIKMVN 481



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 125/286 (43%), Gaps = 35/286 (12%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           +++AC  L  L      +H H++K GF  +P V++          K  +A +  D  P  
Sbjct: 13  ILQACNTLPKLAQ----LHTHIIKLGFQNNPLVLT----------KFTSASSNLDAIPYA 58

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE-VLSLFRQM 154
             + ++            E+AR         +A  +S I+ AY+  S  K   +  +  M
Sbjct: 59  MSLVFSV-----------EDARVY-------DAFLFSTIIRAYAESSQSKHNAIFYYNLM 100

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC-GH 213
              G+ PN+     VL ACA L  +  G  VH    ++  + ++ +   +V MY  C G 
Sbjct: 101 LGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGG 160

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  +F+ +   D   W AMI G A  G +  ++ LF +M  +G  P + T V+VL+ 
Sbjct: 161 MEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSA 220

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           CT    +  G    E+      V   +E    +VD+ A+ G V++A
Sbjct: 221 CTDLGALELG-KWIESYIEKERVLKTVELSNALVDMFAKCGDVDKA 265


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 252/458 (55%), Gaps = 45/458 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG----FEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           +IRG      P+ +V  Y  ML  G      P+  TFP +++AC  +G  +  G+ VHAH
Sbjct: 79  LIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDT-GVQVHAH 137

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMG-------------------------------TA 85
           VVK G   D FV ++L+  ++    +G                                A
Sbjct: 138 VVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 197

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P +D+V+W  M+  Y K GD   ARELF+++PER+ VSW+ +++ Y R     
Sbjct: 198 RDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHL 257

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILAT 202
             L LF QMQ +G KP+   ++S+L+ACA  G +  G  +HS        +N   V+L  
Sbjct: 258 HALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGN 316

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++DMY+KCG + SA  VF  + +KD   WN+++ G+A++G   +S+++F++M+K   +P
Sbjct: 317 ALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 376

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E TFVAVL  C+H  MV  G   F  M   Y VEP ++HY C+VD+L RAG+++EA +F
Sbjct: 377 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEF 436

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I+         ++ +W  LLSACR++G+IE+     R+L +    +   +VL  NIY   
Sbjct: 437 IDTMK---CEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASV 493

Query: 383 GWDMEANKVRKLISETGMKKKPGCSVIE--VNGVVEEF 418
           G    + K+RKL+ ++G+ K+ G + ++  V  +++ F
Sbjct: 494 GEWFGSEKMRKLMDDSGVNKEAGQTFVDGSVKDIIQSF 531


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/389 (40%), Positives = 234/389 (60%), Gaps = 6/389 (1%)

Query: 49  FGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTWTTMVDGY 107
            G  VHA  VK G   D +V ++L+ FY +   +   R +FD+ P  RDVVTW  ++ GY
Sbjct: 148 MGAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGY 207

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
            + G    ARE+F+ MP R+ VSWS ++  Y +  + +  L +F+ M   G+K NE+ +V
Sbjct: 208 VRAGMVGVAREVFDGMPMRDEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIV 267

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           + L+A A LG + QG +VH   KR  +  ++ L  A+VDMYSKCG V +A  VF+ +  +
Sbjct: 268 TALSAAAQLGLLEQGKFVHEVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWR 327

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           D  AWN+MI G+A +G    +++LF++ V  G  PT  TFV VL  C+   +V +G   F
Sbjct: 328 DVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYF 387

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
           + M+  YG+E ++EHY C+VDLL+RAG+V+EA + IE   G     D  +WG +LSAC+ 
Sbjct: 388 KLMAEKYGIESEMEHYGCMVDLLSRAGLVQEAIELIE---GMHIPPDPVLWGTVLSACKR 444

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGC 406
           +G +++G  V  KL E+       +VL  +IY +A  WD E  KVRKL+S  G  K  G 
Sbjct: 445 HGLVDLGITVGNKLIELDPAHDGYYVLLASIYAKAKKWD-EVRKVRKLMSNRGTSKSAGW 503

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           S++E +G+V +FL GD  H  + +IY ++
Sbjct: 504 SLMEAHGIVHKFLVGDMDHKDSVQIYNML 532



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 13/240 (5%)

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLS-------LFRQMQEVGMKPNESGLVSVL 170
            LF ++P RN  S++ ++A+ S   D    ++       +   +  + +K   +G + V 
Sbjct: 109 RLFPRLPRRNPHSFTFLLASLSNHLDADPAVAVSIASRLMGAHVHALAVKAGAAGDLYVR 168

Query: 171 TACAHL-GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
            A  H  G       +        L ++V+   AV+  Y + G V  A  VF+G+  +D 
Sbjct: 169 NALIHFYGVCGDVAAMRKVFDELPLVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPMRDE 228

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +W+ ++ G    G+ + +L +F  MV  G +  E   V  L+      ++  G  + E 
Sbjct: 229 VSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVHEV 288

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +    GV   +   A +VD+ ++ G V  A++  +     +   D   W +++     +G
Sbjct: 289 IKRA-GVAMSMNLGAALVDMYSKCGSVAAAKEVFD----AMPWRDVFAWNSMICGLATHG 343


>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
 gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 499

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 232/390 (59%), Gaps = 6/390 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVIL--GPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           +++M      P+ +TFP + KAC     G L      +H   ++FG   D F +++L+  
Sbjct: 103 FVEMRRRSVPPDFHTFPFVFKACAAKKNGDL-TLVKTLHCQALRFGLLSDLFTLNTLIRV 161

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YSL+  + +A  LFD++P RDVVT+  ++DG  K  +   ARELF+ MP R+ VSW++++
Sbjct: 162 YSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLI 221

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           + Y++++  +E + LF +M  +G+KP+   +VS L+ACA  G   +G  +H Y KR  L 
Sbjct: 222 SGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLF 281

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +  LAT +VD Y+KCG + +A+ +FE  S+K    WNAMI+G+AM+G+ + +++ F +M
Sbjct: 282 IDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKM 341

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           V SG +P   TF++VL  C+H+ +V +  NLF+ M ++Y V  +++HY C+ DLL RAG+
Sbjct: 342 VSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGL 401

Query: 316 VEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           +EEA + IE+ M   GG    +  W  LL  CRI+G IE+  +   ++  +   D   + 
Sbjct: 402 IEEAAEMIEQ-MPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYK 460

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKK 403
           +   +Y  A    E  KVR++I      KK
Sbjct: 461 VMVEMYANAERWEEVVKVREIIDRDKKVKK 490



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 105/251 (41%), Gaps = 40/251 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N  + ++  + +M+ +G +P+N      + AC   G  +  G  +H +  + 
Sbjct: 220 LISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQK-GKAIHDYTKRK 278

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D F+ + L++FY+    + TA  +F+   D+ + TW  M+ G    G+ E      
Sbjct: 279 RLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGE------ 332

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      +  FR+M   G+KP+    +SVL  C+H G + 
Sbjct: 333 -------------------------LTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVD 367

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG------AWN 233
           +   +    +  Y + + +     + D+  + G +  A  + E +  KD G      AW+
Sbjct: 368 EARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMP-KDGGNREKLLAWS 426

Query: 234 AMISGVAMNGD 244
            ++ G  ++G+
Sbjct: 427 GLLGGCRIHGN 437


>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 143/370 (38%), Positives = 224/370 (60%), Gaps = 6/370 (1%)

Query: 67  FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER 126
            + +++++ YS   +M  AR LF++   +D V+WT+M+ GY +    + A  +F  MPE+
Sbjct: 208 IMANAMVDAYSKAGRMEDARTLFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQ 267

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           + ++W+A+++ + +  +    L LF+QM   GM P    LVS L ACA LG +T+G  VH
Sbjct: 268 DTIAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTPFALVSSLGACAKLGLVTRGREVH 327

Query: 187 SY--AKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            +   +R  L+  N+ +  A++DMYSKCG + +A+ VF  +S +D  +WN+M++G + NG
Sbjct: 328 GFILRRRIGLDPFNIFIHNALIDMYSKCGDMATAMLVFARMSERDFISWNSMVTGFSHNG 387

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
             K+SL +F RM+ +  QPT  TF+AVLT C+HA +V DG  + E+M   +GVEP+ EHY
Sbjct: 388 QGKQSLAMFKRMLDAEVQPTYVTFLAVLTACSHAGLVTDGRRILESMQ-YHGVEPRAEHY 446

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
           A  +D L R   +EEA +FI+     +G G    WGALL ACR++G  E+  +V   L +
Sbjct: 447 ASFIDALGRNHQLEEASEFIKGLSSRIGPGTTGSWGALLGACRVHGNTEIAEKVAESLFQ 506

Query: 364 MGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           +   +   +V+  NIY  AG WD +A ++R ++ E G++K   CS IEV      F+A D
Sbjct: 507 LEPGNSGRYVMLSNIYAAAGQWD-DARRIRAIMKEKGLRKDQACSWIEVRSAKHMFVADD 565

Query: 423 NRHAQAGEIY 432
             H +A EIY
Sbjct: 566 TSHCEANEIY 575



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 130/294 (44%), Gaps = 39/294 (13%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           N  T   LI+  + LG +   G   HA ++K        + + L+E Y++++    +R  
Sbjct: 30  NVATVLHLIERAISLGDVRYLGRAAHALLLKTALNHHTLLSNRLIELYAMLNSPAASRTA 89

Query: 89  FDKSPDRDVVTWTTMVDGYGK-MGDFENARELFEKMP--ERNAVSWSAIMAAYSRISDFK 145
           F+  P R+  ++  ++    +      +A  L + MP   RN VS++ I++A +R     
Sbjct: 90  FEDLPYRNAHSYNNLLAALSRGSATLPDALHLLDAMPASSRNVVSYNTIISALARNGRQG 149

Query: 146 EVLSLF-RQMQEVGMKP----NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
           E L +F R  ++  + P    +   +VSV +ACA +GA+     +H       +E  VI+
Sbjct: 150 EALRVFARLARDRCLGPEVALDRFAVVSVASACAGMGALRPLREMHGAVVVSGVEVTVIM 209

Query: 201 ATAVVDMYSKCGHVHSALSVFEGIS-------------------------------NKDA 229
           A A+VD YSK G +  A ++F  +S                                +D 
Sbjct: 210 ANAMVDAYSKAGRMEDARTLFNQMSIQDTVSWTSMIAGYCRAKRLDEAIRVFHMMPEQDT 269

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
            AW A+ISG   NG+   +L+LF +M+  G  PT    V+ L  C    +V  G
Sbjct: 270 IAWTALISGHEQNGEEDAALDLFQQMLVEGMAPTPFALVSSLGACAKLGLVTRG 323


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 246/435 (56%), Gaps = 4/435 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G  QA F + ++  +  M ++    + +T   ++  C+    + + G  +HAH +  
Sbjct: 318 LIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDI-SIGEQLHAHTITR 376

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V ++L+  Y+    +  A   F+  P RD+++WT M+  + + GD E ARE F
Sbjct: 377 GLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYF 436

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMPERN +SW++++A Y +   ++E L ++ QM   G+K +     + ++ACA L  + 
Sbjct: 437 DKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLI 496

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  + + A++     NV +A +VV MYS+CG +  A  +F  I  K+  +WNAM++G A
Sbjct: 497 LGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYA 556

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG  +K +E+F++M+  G  P + ++V+VL+ C+H+  V +G   F +M+  +G+ P  
Sbjct: 557 QNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMS 616

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EH+ C+VDLL RAG +E+A+  I +        +A +WGALL+ACRI+G  ++     + 
Sbjct: 617 EHFVCMVDLLGRAGQLEQAKNLINQMP---FKPNAAIWGALLAACRIHGNTKLAELAVKN 673

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+      ++ L  NIY E+G       VRKL+ + G++K PGCS IEV+  V  F  
Sbjct: 674 LLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTV 733

Query: 421 GDNRHAQAGEIYRVI 435
            D  H Q  +++R++
Sbjct: 734 DDTNHPQIKDVHRML 748



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 171/340 (50%), Gaps = 6/340 (1%)

Query: 37  IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRD 96
           IKA   LG L+   + +H    KF FG D  V +S+L+ Y     M  A+ +F ++P+  
Sbjct: 121 IKASGSLGYLK-LALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPS 179

Query: 97  VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
           +  W +M+ GY K G  + A ELF KMPER+ VSW+ +++  S+     E L+ F +M  
Sbjct: 180 LFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWN 239

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
            G +PN     SVL+AC  +  +  G  +H+   R     +V     ++DMY+KCG + S
Sbjct: 240 QGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLES 299

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           A  VF+G++  +A +W ++I GVA  G  +++L LF++M +      + T   VL  C  
Sbjct: 300 ARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLS 359

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
            K +  G  L  + +   G++  +     +V + A+ G V +A    E     +   D  
Sbjct: 360 QKDISIGEQLHAH-TITRGLDSSVPVANALVTMYAKCGDVWKANHAFEL----MPIRDII 414

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            W A+++A    G +E     + K+ E  +  +++ + +Y
Sbjct: 415 SWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATY 454



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 144/323 (44%), Gaps = 62/323 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++  G     F+ + LL  YS    +  A  +F      +V +W TM+ G+   G 
Sbjct: 26  LHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQ 85

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A +LFEKMPER++VSW+++M+ Y    +                      L + + A
Sbjct: 86  MREAEKLFEKMPERDSVSWNSMMSGYFHNGE----------------------LEATIKA 123

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
              LG +   L +H +A+++    +  + T+V+DMY KCG +  A  VF    N     W
Sbjct: 124 SGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCW 183

Query: 233 NAMISGVAMNGDAKKSLELFDRMVK-------------------------------SGTQ 261
           N+MI G +  G  KK+LELF +M +                                G +
Sbjct: 184 NSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFR 243

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-C-VVDLLARAGMVEEA 319
           P   T+ +VL+ CT    +  G +L    + +  +EP L+ YA C ++D+ A+ G +E A
Sbjct: 244 PNSMTYASVLSACTSIYDLEWGAHLH---ARIVRMEPCLDVYAGCGLIDMYAKCGRLESA 300

Query: 320 EKFIEEKMGGLGGGDANVWGALL 342
            +  +    GL   +A  W +L+
Sbjct: 301 RQVFD----GLTEHNAVSWTSLI 319



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 152/352 (43%), Gaps = 64/352 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI    Q  F   ++  +L+M + GF PN+ T+  ++ AC  +  LE +G  +HA +V+ 
Sbjct: 217 MISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLE-WGAHLHARIVRM 275

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D +    L++ Y+   ++ +AR +FD   + + V+WT+++ G  + G  E      
Sbjct: 276 EPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQE------ 329

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E L LF QM+EV +  ++  L +VL  C     I+
Sbjct: 330 -------------------------EALVLFNQMREVPVASDQFTLATVLGVCLSQKDIS 364

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H++     L+ +V +A A+V MY+KCG V  A   FE +  +D  +W AMI+  +
Sbjct: 365 IGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFS 424

Query: 241 MNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFVA 269
             GD +K+ E FD+                               M++ G +    TF  
Sbjct: 425 QAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFST 484

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            ++ C    ++  G  +      + G    +     VV + +R G +EEA+K
Sbjct: 485 SISACADLAVLILGNQILAQAEKL-GFSSNVSVANSVVTMYSRCGQIEEAQK 535



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%)

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           +  CA L +I     +H+      L+ ++ L   +++MYS CG +  A  VF GI   + 
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRM 255
            +WN MISG A +G  +++ +LF++M
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKM 96


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 233/432 (53%), Gaps = 35/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY+Q   P+ ++  +  ML+ G +P   T    + AC  LG LE  G FVH  V + 
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLER-GKFVHKFVDQL 378

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G D  V++SL+  YS                               K    + A ++F
Sbjct: 379 NLGSDISVMNSLISMYS-------------------------------KCKRVDIASDIF 407

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  R  VSW+A++  Y++     E L+ F +M+ +GMKP+   +VSV+ A A L    
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
              W+H    R  L+KN+ + TA+VDMYSKCG +H A  +F+ IS++    WNAMI G  
Sbjct: 468 HAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  + +L+LFD+M K   +P + T+++V++ C+H+ +V +GL  F++M   YG+EP +
Sbjct: 528 THGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSM 587

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY  +VDLL RAG ++EA  FIE      G     V+GA+L AC+I+  IEVG +  +K
Sbjct: 588 DHYGAMVDLLGRAGRIKEAWDFIENMPISPG---ITVYGAMLGACKIHKNIEVGEKAAKK 644

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   +   HVL  NIY       +  +VRK + + G+KK PGCSV+E+   V  F +
Sbjct: 645 LFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYS 704

Query: 421 GDNRHAQAGEIY 432
           G   H Q+  IY
Sbjct: 705 GSTTHPQSKRIY 716



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 110/179 (61%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           +V   T +V+ Y K    ++A ++F++MPER+ VSW+ I+A +S+    K+ L L  +MQ
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + G +P+   LV+VL A A +G +  G  +H YA R    K V ++TA+ DMYSKCG V 
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           +A  +F+G+  K   +WN+M+ G   NG+ +K++ +F++M++ G  PT  T +  L  C
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 45/330 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ Q  F K ++   L M D G  P++ T   ++ A   +G L   G  +H + ++ 
Sbjct: 219 IIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLM-VGKSIHGYAIRA 277

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF +   + ++L + YS    + TAR +FD    + VV+W +M+DGY + G+ E A  +F
Sbjct: 278 GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           EKM E                                G+ P    ++  L ACA LG + 
Sbjct: 338 EKMLEE-------------------------------GIDPTGVTIMEALHACADLGDLE 366

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G +VH +  + +L  ++ +  +++ MYSKC  V  A  +F  ++ +   +WNAMI G A
Sbjct: 367 RGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYA 426

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAV------LTTCTHAKMVRDGLNLFENMSAVY 294
            NG   ++L  F  M   G +P   T V+V      L+   HAK +  GL +   +    
Sbjct: 427 QNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH-GLIIRSCLDKNI 485

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            V   L      VD+ ++ G +  A K  +
Sbjct: 486 FVTTAL------VDMYSKCGAIHMARKLFD 509



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 27/277 (9%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  + K G    A  +FE + ++    +  ++  Y++ S  +  L+   +M+   +K
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P       +L  C     + +G  +H          NV   T VV+MY+KC  +  A  +
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT----- 275
           F+ +  +D  +WN +I+G + NG AKK+LEL  RM   G +P   T V VL         
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 276 ------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
                 H   +R G     N+S              + D+ ++ G VE A    +    G
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTA------------LADMYSKCGSVETARLIFD----G 308

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +       W +++      G+ E    V+ K+ E GI
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%)

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +  T +V ++SK G ++ A  VFE I +K    ++ M+ G A N   + +L    RM   
Sbjct: 82  LFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYD 141

Query: 259 GTQPTETTFVAVLTTC 274
             +P    F  +L  C
Sbjct: 142 DVKPVVYNFTYLLKVC 157


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 161/441 (36%), Positives = 240/441 (54%), Gaps = 37/441 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+     + ++  +  +L+M   P+++T   ++ AC  LG L N G ++H  +++ 
Sbjct: 184 IISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDL-NSGEWIHKCIMEM 242

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                 R+V   T++VD Y K G+ E AR +F
Sbjct: 243 GMV-------------------------------RNVFVGTSLVDMYAKCGNMEKARSVF 271

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE++ VSW A++  Y+     KE + LF QMQ   +KP+   +V VL+ACA LGA+ 
Sbjct: 272 DGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALE 331

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WV     R     N +L TA++D+Y+KCG +  A  VF+G+  KD   WNA+ISG+A
Sbjct: 332 LGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLA 391

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           MNG  K S  LF ++ K G +P   TF+ +L  CTHA +V +G   F +M   + + P +
Sbjct: 392 MNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSI 451

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EA + I          +A VWGALL ACRI+   ++     ++
Sbjct: 452 EHYGCMVDLLGRAGLLDEAHQLIRNMP---MEANAIVWGALLGACRIHRDTQLAELALKQ 508

Query: 361 LAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +VL  NIY     WD EA KVR  ++E  ++K PGCS IEV+G+V EFL
Sbjct: 509 LIELEPWNSGNYVLLSNIYSANLKWD-EAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFL 567

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
            GD  H  + +IY  +    K
Sbjct: 568 VGDKYHPLSEKIYAKLDELTK 588



 Score =  187 bits (476), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/369 (31%), Positives = 192/369 (52%), Gaps = 43/369 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG +  +    ++  Y  M   GF PNN+TFP ++KAC  L  L+  G+ +H  VVK 
Sbjct: 83  MIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLDLQ-LGVKIHTLVVKG 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV +SL+  Y+                               K G  E+A ++F
Sbjct: 142 GFDCDVFVKTSLVCLYA-------------------------------KCGYLEDAHKVF 170

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +P++N VSW+AI++ Y  +  F+E + +FR++ E+ + P+   +V VL+AC  LG + 
Sbjct: 171 DDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLN 230

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H       + +NV + T++VDMY+KCG++  A SVF+G+  KD  +W AMI G A
Sbjct: 231 SGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYA 290

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG---LNLFENMSAVYGVE 297
           +NG  K++++LF +M +   +P   T V VL+ C     +  G     L +    +Y   
Sbjct: 291 LNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLY--N 348

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P L     ++DL A+ G +  A     E   G+   D  VW A++S   + G +++   +
Sbjct: 349 PVLG--TALIDLYAKCGSMSRA----WEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGL 402

Query: 358 WRKLAEMGI 366
           + ++ ++GI
Sbjct: 403 FGQVEKLGI 411



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 116/238 (48%), Gaps = 5/238 (2%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D    R LF ++ + N   W+ ++        F + +  +  M+  G  PN      VL 
Sbjct: 61  DTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLK 120

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA L  +  G+ +H+   +   + +V + T++V +Y+KCG++  A  VF+ I +K+  +
Sbjct: 121 ACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVS 180

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           W A+ISG    G  ++++++F R+++    P   T V VL+ CT    +  G  + + + 
Sbjct: 181 WTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIM 240

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            + G+   +     +VD+ A+ G +E+A    +    G+   D   WGA++    + G
Sbjct: 241 EM-GMVRNVFVGTSLVDMYAKCGNMEKARSVFD----GMPEKDIVSWGAMIQGYALNG 293


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  281 bits (720), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 151/417 (36%), Positives = 235/417 (56%), Gaps = 39/417 (9%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML     P+  +F  ++++C I G  +  G   H  ++K GF               
Sbjct: 18  YSGMLRNDVLPSKTSFSLILRSCAISGEAQ-LGEAFHCQIMKMGF--------------- 61

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA--VSWSAIM 135
                           + D++  T ++D Y K G  E AR LF+ M ERN+  V+W+ ++
Sbjct: 62  ----------------EYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMI 105

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           +AY +  +F   +S+F+QMQ   +KP E  +VS+L+ACAHLGA+  G W+H Y +   L+
Sbjct: 106 SAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLK 165

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +V+L  A++DMY KCG + +A+ VF G+S K+   WN++I G+ MNG  ++++  F  M
Sbjct: 166 IDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVM 225

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            K G +P   TFV +L+ C+H+ ++  G   F  M  VYG+EP +EHY C+VDLL RAG 
Sbjct: 226 EKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGY 285

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           ++EA + I          ++ V G+LL AC+I+   ++G +V ++L E+   D   +V  
Sbjct: 286 LKEALELIRAMP---MKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFL 342

Query: 376 YNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
            N+Y   + WD + N  RKL+ + G+ K PGCS IEVN +V EF+AGD  H Q  +I
Sbjct: 343 SNLYASLSRWD-DVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQI 398



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + L  +  M    + P+++    +L +CA  G    G   H    +   E ++IL T ++
Sbjct: 13  DFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLL 72

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGA--WNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           D Y+K G+V  A ++F+ ++ +++ +  WN MIS     G+   ++ +F +M     +PT
Sbjct: 73  DFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPT 132

Query: 264 ETTFVAVLTTCTH 276
           E T V++L+ C H
Sbjct: 133 EVTMVSLLSACAH 145



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 37/239 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y+Q      ++  +  M     +P   T   L+ AC  LG L+  G ++H ++   
Sbjct: 104 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALD-MGEWIHGYIRT- 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                         K    DVV    ++D Y K G  E A ++F
Sbjct: 162 ------------------------------KRLKIDVVLGNALIDMYCKCGALEAAIDVF 191

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  +N   W++I+         +E ++ F  M++ G+KP+    V +L+ C+H G ++
Sbjct: 192 HGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLS 251

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G  +       Y LE  V     +VD+  + G++  AL +   +  K     N+M+ G
Sbjct: 252 AGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 306


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 252/437 (57%), Gaps = 36/437 (8%)

Query: 1   MIRGYMQANFPKLSVFC-YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y Q    K + F  Y  ML  G  PN +TFP ++K C  +G L   G  VH  VVK
Sbjct: 95  LIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLR-LGKCVHGCVVK 153

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF ED  V+++L+  Y  + + G                             FE A ++
Sbjct: 154 FGFEEDVHVLNTLIHMYCCLGEDG-----------------------------FEFAEKV 184

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+  P+ + V+WSA++A + R+      + LFR+MQ +G+ P+E  +VSVL+ACA LGA+
Sbjct: 185 FDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGAL 244

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WV SY ++ ++ K+V L  A++DM++KCG+V  A+ +F  + ++   +W ++I+G+
Sbjct: 245 ELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGL 304

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G    ++ LFD MV++G  P +  F+ VL+ C+H+ +V  G   F +M   + + P+
Sbjct: 305 AMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPK 364

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL R G V+EA +F+ +KM      +  +W  +++AC   G++++G  + +
Sbjct: 365 VEHYGCMVDLLCRGGFVKEAFEFV-QKMP--FEPNQIIWRTIITACHATGELKLGESISK 421

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L +      S +VL  NIY K   W+ +  KVR+++   GMKK PG ++IEVN  + EF
Sbjct: 422 ELIKSEPMHESNYVLLSNIYAKLRQWE-KKTKVREMMDMRGMKKVPGSTMIEVNNEMYEF 480

Query: 419 LAGDNRHAQAGEIYRVI 435
           +AGD  H Q  EIY ++
Sbjct: 481 VAGDKSHDQYKEIYEMV 497



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 136/318 (42%), Gaps = 31/318 (9%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K G   +P +++      S ++ +  A + F   P     T T           
Sbjct: 37  IHAFILKTGLQNNPLILTKFTSTSSNLNSIHYATS-FLFPPSHTTSTPT----------- 84

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLT 171
                      P  +A  ++ ++ AYS+  D K    LF R M   G+ PN+     VL 
Sbjct: 85  -----------PSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLK 133

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH--VHSALSVFEGISNKDA 229
            CA +G++  G  VH    ++  E++V +   ++ MY   G      A  VF+     D 
Sbjct: 134 GCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDT 193

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
             W+AMI+G    G + ++++LF  M   G  P E T V+VL+ C     +  G    E+
Sbjct: 194 VTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELG-KWVES 252

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
                 +   +E    ++D+ A+ G V++A K   +    +       W ++++   ++G
Sbjct: 253 YVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQ----MDSRTIVSWTSVIAGLAMHG 308

Query: 350 KIEVGNRVWRKLAEMGIT 367
           +      ++ ++ E GIT
Sbjct: 309 RGLDAVSLFDEMVENGIT 326


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 246/438 (56%), Gaps = 8/438 (1%)

Query: 1   MIRGYMQANFPKLS--VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I GY +   P  +  VFC + + +  + PN  T      A   +G L   G  VH  +V
Sbjct: 203 LIDGYARGGLPDEAWRVFCRMVVAESVW-PNEVTLVAAASAAGQMG-LLGLGRTVHQCIV 260

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + G      + ++L++ +     +  A+ +FD  P +DV +WT+MV  Y K GD ENA +
Sbjct: 261 ESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAK 320

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+++P RN VSWS ++AAYS  +   E + +F  M   G++P ++ LVSVL+ACA L +
Sbjct: 321 LFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCS 380

Query: 179 ITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +  G W++ +Y   + +E    L+ A +DM++KCG V +A  +F  + +K+  +WN MI 
Sbjct: 381 LDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIM 440

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              ++G  +++L LF     +G  P E T++ VL+ C+H  +V +G   F+ M  VYG+E
Sbjct: 441 AHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIE 500

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+ EHYAC++DLL + G+++EA    E       G D   WGALL+ACR++G +E+G   
Sbjct: 501 PRAEHYACMIDLLGKVGLLQEA---FEVARSMPVGADEAGWGALLNACRMHGNVEIGKCA 557

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             KLA +  +D   +VL   IY       +   +R ++ +  +KK PGCS IEV+G   E
Sbjct: 558 ADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHE 617

Query: 418 FLAGDNRHAQAGEIYRVI 435
           FL  D  H  + +IY  +
Sbjct: 618 FLVADVSHVHSEDIYAAL 635



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 171/409 (41%), Gaps = 76/409 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVK 59
           M+RG+++A  P  ++  +  +L      +  T    +KA      P E     +H    K
Sbjct: 103 MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA----IHCVAFK 158

Query: 60  FGF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            GF G+     ++L+  Y+    +  AR LFD+  DRDVV+WTT++DGY + G  + A  
Sbjct: 159 RGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWR 218

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F +M    +V W                             PNE  LV+  +A   +G 
Sbjct: 219 VFCRMVVAESV-W-----------------------------PNEVTLVAAASAAGQMGL 248

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  VH          +V L  A+VDM+ KCG V +A  VF+G+  KD  +W +M+S 
Sbjct: 249 LGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA 308

Query: 239 VAMNGD-------------------------------AKKSLELFDRMVKSGTQPTETTF 267
            A  GD                                 +++ +F+ M+ +G +P + T 
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V+VL+ C     +  G  L++     + VE         +D+ A+ G V  A +      
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM- 427

Query: 328 GGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHV 373
                 D NV  W  ++ A  ++G+ E    ++++    GI  D +T++
Sbjct: 428 -----EDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYI 471


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 144/372 (38%), Positives = 218/372 (58%), Gaps = 8/372 (2%)

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           +VS  +E   +V     AR LFD+ PD DV++W T++ GY   G+ E   ++FE+MP RN
Sbjct: 62  IVSGYIELGDMV----AARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARN 117

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAITQGLWVH 186
             SW+ ++  Y R   FKE L  F++M   G+  PN+  +V+VL+AC+ LG +  G WVH
Sbjct: 118 VYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVH 177

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
            YA     + N+ +  A++DMY+KCG +  AL VF+G+  KD   WN +I+ +AM+  A 
Sbjct: 178 VYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAA 237

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
            +L LF+ M ++G +P   TFV +L+ CTH  +VR+G   F++M   Y + PQ+EHY C+
Sbjct: 238 DALSLFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCM 297

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           VDLL RAG++ +A   +  KM      D  +W ALL ACR Y  +E+     ++L E+  
Sbjct: 298 VDLLGRAGLINQAVDIV-RKMP--MEPDVVIWAALLGACRXYKNVEMAELALQRLIELEP 354

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
            +    V+  NIYK+ G   +  +++  + +TG +K PGCSVI  N  V EF + D RH 
Sbjct: 355 NNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDERHP 414

Query: 427 QAGEIYRVIHSF 438
           +   IYR +   
Sbjct: 415 ETDSIYRALQGL 426



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 35/239 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I GY++    K ++ C+  ML D    PN+YT   ++ AC  LG LE  G +VH +   
Sbjct: 124 LIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLE-IGKWVHVYADS 182

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G+  + FV ++L++ Y+    +  A  +FD    +D++TW T+++              
Sbjct: 183 IGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINS------------- 229

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                          +A +   +D    LSLF  M+  G +P+    V +L+AC H+G +
Sbjct: 230 ---------------LAMHXHAAD---ALSLFEGMKRAGERPDGVTFVGILSACTHMGLV 271

Query: 180 TQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMI 236
             G L   S    Y +   +     +VD+  + G ++ A+ +   +    D   W A++
Sbjct: 272 RNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALL 330


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  281 bits (719), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 246/439 (56%), Gaps = 43/439 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + +M+    +P+  T   ++ AC   G +E  G  VH+ +   
Sbjct: 178 MISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIE-LGRQVHSWINDH 236

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L++ YS                               K G+ E A EL 
Sbjct: 237 GFGSNLKIVNALIDLYS-------------------------------KCGEVETACELL 265

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACAHLGAI 
Sbjct: 266 EGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 325

Query: 181 QGLWVHSYAKRYHLEKNVI-----LATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNA 234
            G W+H Y  +  L+  V+     L T+++DMY+KCG + +A  V +  + N+    WNA
Sbjct: 326 IGRWIHVYIDK-KLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNA 384

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI G AM+G A  + ++F RM K+G +P + TFV +L+ C+H+ M+  G N+F +M   Y
Sbjct: 385 MIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDY 444

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            + P+LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC+I+G +E+G
Sbjct: 445 NITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP---MEPDGVIWCSLLKACKIHGNLELG 501

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK-PGCSVIEVNG 413
               +KL ++   +  ++VL  NIY  AG   E  K+R L+++ GMKKK PGCS IE++ 
Sbjct: 502 ESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDS 561

Query: 414 VVEEFLAGDNRHAQAGEIY 432
           VV EF+ GD  H Q  EIY
Sbjct: 562 VVHEFIIGDKLHPQNREIY 580



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 209/370 (56%), Gaps = 9/370 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  ++  Y+ M+ +G  PN +TFP L+K+C      +  G  +H HV+K 
Sbjct: 46  MFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKTFKE-GQQIHGHVLKL 104

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V +SL+  Y+   ++  A+ +FD+S  RDVV++T ++ GY   G  E+A+++F
Sbjct: 105 GFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMF 164

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+   ++K+ L LF++M +  +KP+ES + +V++ACA  G+I 
Sbjct: 165 DEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIE 224

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D+YSKCG V +A  + EG+SNKD  +WN +I G  
Sbjct: 225 LGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYT 284

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG----LNLFENMSAVYGV 296
                K++L LF  M++SG  P + T +++L  C H   +  G    + + + +  V  V
Sbjct: 285 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVV-V 343

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
                    ++D+ A+ G ++ A +  +           + W A++    ++G+      
Sbjct: 344 TNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRS---LSTWNAMIFGFAMHGRANAAFD 400

Query: 357 VWRKLAEMGI 366
           ++ ++ + GI
Sbjct: 401 IFSRMRKNGI 410



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 123/258 (47%), Gaps = 36/258 (13%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +FE +PE N + W+ +   ++  SD    L L+  M  +G+ PN      +L +CA 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 176 LGAITQG---------------LWVHS-----YAKRYHLE-----------KNVILATAV 204
                +G               L+VH+     YA+   LE           ++V+  TA+
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +  Y+  G++ SA  +F+ I  KD  +WNAMISG A  G+ KK+LELF  M+K+  +P E
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           +T   V++ C  +  +  G  +   ++  +G    L+    ++DL ++ G VE A + +E
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSWIND-HGFGSNLKIVNALIDLYSKCGEVETACELLE 266

Query: 325 EKMGGLGGGDANVWGALL 342
               GL   D   W  L+
Sbjct: 267 ----GLSNKDVISWNTLI 280


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 241/439 (54%), Gaps = 15/439 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF-------V 53
           ++R   +   P L+   + D+      P+NY+F  L++A   L       +        V
Sbjct: 161 LLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALIAGSV 217

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA  ++ G   DP V S  +  Y+    +G ARA F +    DVV  T MV      G+ 
Sbjct: 218 HASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEA 277

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           + ARELF+ MP+R+ V+W+A++A Y      +E L LF +M+  G    E  LVS LTAC
Sbjct: 278 DAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTAC 337

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+ +G WVHS A    +  +V L TA++DMYSKCG V +A+ VF+ +  ++   W 
Sbjct: 338 AQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWT 397

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           + +SG+AMNG  +  L LF RM  +G +P   TFV VL  C+ A +V +G   F++M + 
Sbjct: 398 SAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN 457

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G++P LEHY C+VDL  RAG +++A  FI    G        VWGALL+A RI+  +E+
Sbjct: 458 HGIDPWLEHYGCMVDLYGRAGRLDDAVNFIN---GMPLEPHEGVWGALLNASRIHKNVEL 514

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           G     KL  +   + + HVL  NIY ++  W   +N VR ++   G+KK PGCS IEV 
Sbjct: 515 GKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSN-VRNMMKAKGVKKVPGCSAIEVG 573

Query: 413 GVVEEFLAGDNRHAQAGEI 431
           G V EF  G   H +  EI
Sbjct: 574 GKVHEFFVGGKTHPRHKEI 592


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 245/438 (55%), Gaps = 8/438 (1%)

Query: 1   MIRGYMQANFPKLS--VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I GY +   P  +  VFC + ++     PN  T      A   +G L   G  VH  +V
Sbjct: 203 LIDGYARGGLPDEAWRVFCRM-VVAESVWPNEVTLVAAASAAGQMG-LLGLGRTVHQCIV 260

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + G      + ++L++ +     +  A+ +FD  P +DV +WT+MV  Y K GD ENA +
Sbjct: 261 ESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAK 320

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+++P RN VSWS ++AAYS  +   E + +F  M   G++P ++ LVSVL+ACA L +
Sbjct: 321 LFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCS 380

Query: 179 ITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +  G W++ +Y   + +E    L+ A +DM++KCG V +A  +F  + +K+  +WN MI 
Sbjct: 381 LDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNMEDKNVVSWNTMIM 440

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              ++G  +++L LF     +G  P E T++ VL+ C+H  +V +G   F+ M  VYG+E
Sbjct: 441 AHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGRCHFKEMKIVYGIE 500

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+ EHYAC++DLL + G+++EA    E       G D   WGALL+ACR++G +E+G   
Sbjct: 501 PRAEHYACMIDLLGKVGLLQEA---FEVARSMPVGADEAGWGALLNACRMHGNVEIGKCA 557

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             KLA +  +D   +VL   IY       +   +R ++ +  +KK PGCS IEV+G   E
Sbjct: 558 ADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCSSIEVDGKCHE 617

Query: 418 FLAGDNRHAQAGEIYRVI 435
           FL  D  H  + +IY  +
Sbjct: 618 FLVADVSHVHSEDIYAAL 635



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 171/409 (41%), Gaps = 76/409 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVK 59
           M+RG+++A  P  ++  +  +L      +  T    +KA      P E     +H    K
Sbjct: 103 MMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEA----IHCVAFK 158

Query: 60  FGF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            GF G+     ++L+  Y+    +  AR LFD+  DRDVV+WTT++DGY + G  + A  
Sbjct: 159 RGFIGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWR 218

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F +M    +V W                             PNE  LV+  +A   +G 
Sbjct: 219 VFCRMVVAESV-W-----------------------------PNEVTLVAAASAAGQMGL 248

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  VH          +V L  A+VDM+ KCG V +A  VF+G+  KD  +W +M+S 
Sbjct: 249 LGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVSA 308

Query: 239 VAMNGD-------------------------------AKKSLELFDRMVKSGTQPTETTF 267
            A  GD                                 +++ +F+ M+ +G +P + T 
Sbjct: 309 YAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDATL 368

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V+VL+ C     +  G  L++     + VE         +D+ A+ G V  A +      
Sbjct: 369 VSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNME 428

Query: 328 GGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHV 373
                 D NV  W  ++ A  ++G+ E    ++++    GI  D +T++
Sbjct: 429 ------DKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYI 471


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 244/447 (54%), Gaps = 41/447 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG----FEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           +IRG      P+ +V  Y  M   G      P+  TFP +++AC  +G     G  VHAH
Sbjct: 79  LIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGA-GGTGAQVHAH 137

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMG-------------------------------TA 85
           VVK G   D FV ++L+  ++   ++G                                A
Sbjct: 138 VVKAGCESDAFVRNALIGMHASCGELGVASALFDGRAREDAVAWSAMITGCARRGDIVAA 197

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P +D V+W  M+  Y K G+   AR LF ++PER+ VSW+A+++ + R     
Sbjct: 198 RKLFDECPVKDHVSWNVMITAYAKRGEMAPARVLFNRIPERDVVSWNAMISGHVRCGSHV 257

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK--NVILATA 203
             + LF QMQ +G KP+   ++S+L+ACA  G I  G  +HS      L     VIL  A
Sbjct: 258 YAMELFEQMQRMGQKPDVVTMLSLLSACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNA 317

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG + SAL VF  + +KD   WN++I G+A++G   +S+++F +M+K   +P 
Sbjct: 318 LIDMYAKCGSMKSALQVFWVMRDKDVSTWNSIIGGLALHGHVLESIDVFKKMLKEKVRPD 377

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           E TFVAVL  C+H  MV  G   F  M   Y +EP ++HY C+VD+L RAG+++EA +FI
Sbjct: 378 EITFVAVLIACSHGGMVDKGREYFNLMQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFI 437

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +         ++ +W  LL ACR++G+IE+     R+L +    +   +VL  NIY  AG
Sbjct: 438 DTMK---VEPNSVIWRTLLGACRVHGEIELAEHANRQLLKARNDESGDYVLLSNIYASAG 494

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIE 410
              E+ K+RKL+ ++G+ K+ G +V++
Sbjct: 495 EWSESEKMRKLMDDSGVNKQAGRTVVD 521


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 156/443 (35%), Positives = 248/443 (55%), Gaps = 44/443 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-----DMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           MIR Y       L++  Y  ML     +    P+ +TFP ++K+C  L    + G  VH 
Sbjct: 128 MIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLM-CYDLGKQVHG 186

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           HV KFG   +  V +SL+E Y                                K    ++
Sbjct: 187 HVFKFGQKSNTVVENSLVEMYV-------------------------------KCDSLDD 215

Query: 116 ARELFEKMPERNAV--SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           A  +FE+M ER+A   SW+AI++ Y+RI  + + L  FR+MQ VG++P+E  LVSVL  C
Sbjct: 216 AHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDC 275

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+  G W+H YA +    +N+ +  A+++MY+KCG +     +F+ +  +D  +W+
Sbjct: 276 AQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWS 335

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            MI G+A +G A++++ELF  M K+  +P+  TFV +LT C HA ++ +GL  FE+M   
Sbjct: 336 TMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRD 395

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           Y +EP +EHY C+V+LL  +G +++A + + +KM      D+ +WG+LLS+CR +G +++
Sbjct: 396 YNIEPGVEHYGCLVNLLGLSGRLDQALELV-KKMP--RKPDSPIWGSLLSSCRSHGNLKI 452

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVN 412
                  L E+   D   +VL  N+Y + G WD   +++RKL+    MKK PGCS IEV+
Sbjct: 453 AVIAMEHLLELEPADTGNYVLLSNLYADLGKWD-GVSRMRKLMRSKSMKKTPGCSSIEVD 511

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
            +V+EF +GD+    +  I RV+
Sbjct: 512 NMVQEFASGDDSKPFSKAICRVL 534



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 134/304 (44%), Gaps = 51/304 (16%)

Query: 33  FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS 92
           F P++K C  +  L+     +HAH+VKF   +  F+V                       
Sbjct: 62  FVPILKDCPNIVELKK----IHAHIVKFSLSQSSFLV----------------------- 94

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
                   T MVD     G+ E A  LF+ + + NA  ++A++ AY     +   +++++
Sbjct: 95  --------TKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYK 146

Query: 153 QMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           QM      E  + P++     V+ +CA L     G  VH +  ++  + N ++  ++V+M
Sbjct: 147 QMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEM 206

Query: 208 YSKCGHVHSALSVFEGISNKDAG--AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           Y KC  +  A  VFE ++ +DA   +W A++SG A  G    +LE F RM   G +P E 
Sbjct: 207 YVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEI 266

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEK 321
           + V+VL  C     +  G         +Y  +       CV    +++ A+ G +++  +
Sbjct: 267 SLVSVLPDCAQLGALELG-----KWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRR 321

Query: 322 FIEE 325
             ++
Sbjct: 322 LFDQ 325



 Score = 42.4 bits (98), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 42/221 (19%), Positives = 99/221 (44%), Gaps = 15/221 (6%)

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           +++ + ++  E   V +L  C ++  + +   +H++  ++ L ++  L T +VD+ +  G
Sbjct: 49  KLRALKIREMEDMFVPILKDCPNIVELKK---IHAHIVKFSLSQSSFLVTKMVDVCNHYG 105

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-----KSGTQPTETTF 267
               A  +F+G+++ +A  +NAMI     N     ++ ++ +M+     ++   P + TF
Sbjct: 106 ETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTF 165

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
             V+ +C    M  D           +G +        +V++  +   +++A +  EE  
Sbjct: 166 PFVVKSCA-GLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEE-- 222

Query: 328 GGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             +   DA +  W A++S     G        +R++  +GI
Sbjct: 223 --MTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGI 261


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 241/439 (54%), Gaps = 15/439 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF-------V 53
           ++R   +   P L+   + D+      P+NY+F  L++A   L       +        V
Sbjct: 168 LLRALARGRRPHLAFGAFRDL---PLAPDNYSFTFLVRAATALAAAAASALDAALIAGSV 224

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA  ++ G   DP V S  +  Y+    +G ARA F +    DVV  T MV      G+ 
Sbjct: 225 HASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEA 284

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           + ARELF+ MP+R+ V+W+A++A Y      +E L LF +M+  G    E  LVS LTAC
Sbjct: 285 DAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTAC 344

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+ +G WVHS A    +  +V L TA++DMYSKCG V +A+ VF+ +  ++   W 
Sbjct: 345 AQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWT 404

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           + +SG+AMNG  +  L LF RM  +G +P   TFV VL  C+ A +V +G   F++M + 
Sbjct: 405 SAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN 464

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G++P LEHY C+VDL  RAG +++A  FI    G        VWGALL+A RI+  +E+
Sbjct: 465 HGIDPWLEHYGCMVDLYGRAGRLDDAVNFIN---GMPLEPHEGVWGALLNASRIHKNVEL 521

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           G     KL  +   + + HVL  NIY ++  W   +N VR ++   G+KK PGCS IEV 
Sbjct: 522 GKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSN-VRNMMKAKGVKKVPGCSAIEVG 580

Query: 413 GVVEEFLAGDNRHAQAGEI 431
           G V EF  G   H +  EI
Sbjct: 581 GKVHEFFVGGKTHPRHKEI 599


>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Brachypodium distachyon]
          Length = 500

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 143/390 (36%), Positives = 232/390 (59%), Gaps = 6/390 (1%)

Query: 48  NFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY 107
             G  +H+ +V+ G   D  V +SL++ Y    ++ +AR++FD++ D+D+  W  M+ GY
Sbjct: 86  TLGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGY 145

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGL 166
            K G+   ARELF+ MP RN VSW+ ++ AY+++    E + +FR+MQ E G++P+   L
Sbjct: 146 VKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVAL 205

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           +SVL+AC  LGA+  G WVH +  R  L   + L  A++DMY K G V  A+ VFEG+  
Sbjct: 206 LSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQ 265

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           K    W  +I+G A++G   +++E+F RM      P + TF+A+L+ C+H  +   G   
Sbjct: 266 KSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLGRWY 325

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
           F+ M + Y ++ ++EHY C+VDLL RAG + EA+  +++        +A +WGALL+A R
Sbjct: 326 FKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMP---FKANAAIWGALLAAAR 382

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPG 405
            +G  E+G +    L E+   +   ++L  NIY E   WD + +K+RK + + G++  PG
Sbjct: 383 THGDAELGKQALLHLIELEPHNSGNYILLSNIYAEQERWD-DVSKLRKQMKDRGLRNVPG 441

Query: 406 CSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            S IEV+G+V EF + D  H    +I +V+
Sbjct: 442 ASSIEVDGMVHEFTSRDGSHPCLHKICKVL 471



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 114/249 (45%), Gaps = 35/249 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I  Y Q   P  +V  +  M ++ G EP+      ++ AC  LG + + G +VH  VV+
Sbjct: 172 VIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVALLSVLSACGDLGAV-DLGEWVHRFVVR 230

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G      +++++++ Y  +  +  A  +F+    + VVTWTT++ G+   G    A E+
Sbjct: 231 RGLCWQIPLMNAIIDMYVKLGCVRKAVEVFEGMDQKSVVTWTTVIAGFALHGLGLEAIEM 290

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M                             +M+ V   PN+   +++L+AC+H+G  
Sbjct: 291 FRRM-----------------------------EMENVA--PNDVTFLAILSACSHVGLT 319

Query: 180 TQGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMIS 237
             G W       +Y +++ V     +VD+  + G++  A  + + +  K +A  W A+++
Sbjct: 320 DLGRWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFKANAAIWGALLA 379

Query: 238 GVAMNGDAK 246
               +GDA+
Sbjct: 380 AARTHGDAE 388


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 155/389 (39%), Positives = 229/389 (58%), Gaps = 6/389 (1%)

Query: 49  FGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGY 107
            G  VHA  VK G   D +V ++L  FY +   +G  R +FD+ P  RDVVTW  ++ GY
Sbjct: 148 LGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGY 207

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
            + G    ARE+FE+MP R+ VSWS ++  Y +  +    L +FR M E G++ NE+ +V
Sbjct: 208 VRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVV 267

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           + L+A A +G +  G +VH   +R  +  +V +  A+VDM+SKCG V  A  VF+G+  +
Sbjct: 268 TALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRR 327

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           D  AWNAMI G+A +G  + ++ELF R +  G  PT+ TFV VL  C+   +V +G   F
Sbjct: 328 DVFAWNAMICGLASHGLGQDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYF 387

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
           + M   Y +EP++EHY C+VDLL RAG+V EA + IE   G     D  +WG +LSAC+ 
Sbjct: 388 KLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIE---GMHIAPDPVLWGTVLSACKT 444

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGC 406
           +  +++G  V  KL E+       +VL  +IY +A  WD E  +VRKL+S  G  K  G 
Sbjct: 445 HNLVDLGITVGNKLIELEPAHDGHYVLLASIYAKAKKWD-EVREVRKLMSSRGTGKSAGW 503

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           S++E  G + +FL GD  H  + +IY ++
Sbjct: 504 SLMEAQGNLHKFLVGDMDHKDSVQIYNML 532



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 110/266 (41%), Gaps = 41/266 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY++     +++  + DM++ G   N       + A   +G LE+ G FVH  V + 
Sbjct: 234 LVGGYVKEGELDVALGVFRDMVEKGVRVNEAAVVTALSAAAQMGLLEH-GRFVHEVVQRT 292

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V ++L++ +S    +  AR +FD  P RDV  W  M+ G    G  ++A ELF
Sbjct: 293 GMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLGQDAVELF 352

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                         +R + E G+ P +   V VL AC+  G + 
Sbjct: 353 ------------------------------WRFLDE-GLWPTDITFVGVLNACSRCGLVA 381

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +      +Y +E  +     +VD+  + G V  A+ + EG+    D   W  ++S 
Sbjct: 382 EGRRYFKLMVDKYRIEPEMEHYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLS- 440

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTE 264
                 A K+  L D  +  G +  E
Sbjct: 441 ------ACKTHNLVDLGITVGNKLIE 460



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 50/264 (18%), Positives = 93/264 (35%), Gaps = 65/264 (24%)

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF  +P RN  S++ ++A+ S                            + L A  H  
Sbjct: 113 RLFPNLPRRNLHSFTFLLASIS----------------------------NHLDATDHRA 144

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS--------------------- 216
           +   G  VH+ A +     ++ +  A+   Y  CG V +                     
Sbjct: 145 SSFLGSHVHALAVKAGAAGDLYVRNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVL 204

Query: 217 -----------ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
                      A  VFE +  +D  +W+ ++ G    G+   +L +F  MV+ G +  E 
Sbjct: 205 AGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVEKGVRVNEA 264

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
             V  L+      ++  G  + E +    G+   +   A +VD+ ++ G V  A +  + 
Sbjct: 265 AVVTALSAAAQMGLLEHGRFVHEVVQRT-GMPVSVNVGAALVDMFSKCGCVAVAREVFD- 322

Query: 326 KMGGLGGGDANVWGALLSACRIYG 349
              G+   D   W A++     +G
Sbjct: 323 ---GMPRRDVFAWNAMICGLASHG 343


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 157/452 (34%), Positives = 246/452 (54%), Gaps = 48/452 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-------MGFEPNNYTFPPLIKACVILGPLENFGMFV 53
           +IRG   ++ P+ +V  Y  M         M   P+  TFP +++AC  +G  E  G  V
Sbjct: 79  LIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGET-GAQV 137

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA---------------------------- 85
           HAHVVK G   D FV ++L+  ++ +  +G A                            
Sbjct: 138 HAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDI 197

Query: 86  ---RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
              R LFD+SP +D+V+W  M+  Y K+GD   ARELF+  P+R+ VSW+A+++ Y R  
Sbjct: 198 GAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCG 257

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY--AKRYHLEKNVIL 200
             K+ + LF QMQ +G KP+   ++S+L+ACA  G +  G  +H +   +   +     L
Sbjct: 258 SRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTAL 317

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             A++DMY+KCG + SAL VF  + +K+   WN++I G+A++G A +S+ +F +M++   
Sbjct: 318 GNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV 377

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P E TFVAVL  C+H  MV  G   F  M   Y +EP ++HY C+VD+L+R G+++EA 
Sbjct: 378 KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAF 437

Query: 321 KFIEEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           +FI     G    + N  +W  LL ACRI+G+IE+     R+L +         VL  NI
Sbjct: 438 EFI-----GTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNI 492

Query: 379 YKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           Y   G    +  +RKL+ ++G+ K+ G +VI+
Sbjct: 493 YASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 142/328 (43%), Gaps = 43/328 (13%)

Query: 34  PPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA--RALFDK 91
           P L + C  L  ++     VHA +V  GF  D   +  L+   ++  + GTA  R +FD+
Sbjct: 12  PALWRRCRSLRQIKQ----VHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDR 67

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
            P  D   + T++ G                   R+AVS  A MA +S   D        
Sbjct: 68  IPHPDRFMYNTLIRGAA------------HSDAPRDAVSIYARMARHSADCDL------- 108

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
                + ++P++     VL ACA +GA   G  VH++  +   E +  +  A++ M++  
Sbjct: 109 -----MTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATL 163

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G + +A ++F+G + +DA AW+AMISG A  GD   + ELFD        P +      +
Sbjct: 164 GDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE------SPVKDLVSWNV 217

Query: 272 TTCTHAKM--VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
               +AK+  +     LF+        +  +  +  ++    R G  ++A +  E+    
Sbjct: 218 MITAYAKLGDMAPARELFDGAP-----DRDVVSWNAMISGYVRCGSRKQAMELFEQMQAM 272

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRV 357
               D     +LLSAC   G ++ G R+
Sbjct: 273 GEKPDTVTMLSLLSACADSGDLDAGRRL 300


>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 799

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 152/427 (35%), Positives = 236/427 (55%), Gaps = 5/427 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  PN   F  ++ AC  L  L   G  +HA  +K G   + FV SSL++ Y 
Sbjct: 370 YSQMLADGCRPNISCFSSVLSACATLEDLRG-GARIHARSLKMGSSTNVFVSSSLIDMYC 428

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              K   A+ +FD  P++++V W ++  GY   G    A  LF+KMP RN  SW+ I++ 
Sbjct: 429 KCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISG 488

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y++   F + L  F  M   G  P E    SVL ACA+L ++  G   H+   +  +E++
Sbjct: 489 YAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEES 548

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + + TA+ DMY+K G + S+  +F  +  ++   W AMI G+A NG A++S+ LF+ M+ 
Sbjct: 549 IFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMA 608

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G  P E TF+A+L  C+H  +V   ++ FE M A +G+ P+ +HY C+VD+LARAG + 
Sbjct: 609 TGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQA-WGISPKEKHYTCMVDVLARAGRLI 667

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EAE  +   M      +AN W ALLSAC  Y   E+G R  ++L E+G  + + +VL  N
Sbjct: 668 EAEALL---MKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSN 724

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +Y   G   +A ++R L+  T +KK  GCS ++V G    F + + +H  + EI  ++  
Sbjct: 725 MYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEINEILDL 784

Query: 438 FLKMSNL 444
            L  S+L
Sbjct: 785 LLWESSL 791



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 203/453 (44%), Gaps = 64/453 (14%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I G+++      ++  +  M+  G  PN  TF  +IKACV  G      M +    +K  
Sbjct: 221 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEF-GLAMSIVGSAIKSN 279

Query: 62  FGEDPF-VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           F E    V +SL+  Y  +     AR +FD+   +DVV+WT ++D Y + GD + AR + 
Sbjct: 280 FFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVL 339

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPERN VSW  ++A + +  +  E + L+ QM   G +PN S   SVL+ACA L  + 
Sbjct: 340 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLR 399

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H+ + +     NV ++++++DMY KC     A ++F+ +  K+   WN++ SG +
Sbjct: 400 GGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYS 459

Query: 241 MNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFVA 269
            NG   +++ LF +                               M+ SG  P E TF +
Sbjct: 460 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 519

Query: 270 VLTTC-----------THAKMVRDGL--NLF--ENMSAVYGVEPQLEH------------ 302
           VL  C            HAK ++ G+  ++F    +S +Y     L+             
Sbjct: 520 VLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 579

Query: 303 ---YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
              +  ++  LA  G+ EE+    E+ M      + + + ALL AC   G +E     + 
Sbjct: 580 DVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFE 639

Query: 360 KLAEMGITDFSTH-VLSYNIYKEAGWDMEANKV 391
           K+   GI+    H     ++   AG  +EA  +
Sbjct: 640 KMQAWGISPKEKHYTCMVDVLARAGRLIEAEAL 672



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 166/394 (42%), Gaps = 71/394 (18%)

Query: 49  FGMFVHAHVVKFGFGEDPFVVSSLLEFYS----------------------------LVH 80
             + +HAH V+ G   D  V S LL  Y+                            +VH
Sbjct: 101 LALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVH 160

Query: 81  K------MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
           +      + +AR LFD  P+R VV++TTMVD   K G    A EL+E+ P  +   ++A 
Sbjct: 161 EHVKAGDIASARGLFDGMPERSVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTAT 220

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG-----------AITQGL 183
           ++ + R       L +FR+M   G++PN    V ++ AC   G           AI    
Sbjct: 221 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNF 280

Query: 184 WVHSY------------------AKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFE 222
           +  S                   A++   E   K+V+  TA++D+YS+ G +  A  V +
Sbjct: 281 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 340

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +  ++  +W  +I+     G+A ++++L+ +M+  G +P  + F +VL+ C   + +R 
Sbjct: 341 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRG 400

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G  +    S   G    +   + ++D+  +     +A+   +     L   +   W +L 
Sbjct: 401 GARIHAR-SLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDT----LPEKNIVCWNSLA 455

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           S     GK+     +++K+    +  ++T +  Y
Sbjct: 456 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGY 489


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 157/452 (34%), Positives = 246/452 (54%), Gaps = 48/452 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-------MGFEPNNYTFPPLIKACVILGPLENFGMFV 53
           +IRG   ++ P+ +V  Y  M         M   P+  TFP +++AC  +G  E  G  V
Sbjct: 79  LIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGET-GAQV 137

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA---------------------------- 85
           HAHVVK G   D FV ++L+  ++ +  +G A                            
Sbjct: 138 HAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFDGEAREDAVAWSAMISGFARRGDI 197

Query: 86  ---RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
              R LFD+SP +D+V+W  M+  Y K+GD   ARELF+  P+R+ VSW+A+++ Y R  
Sbjct: 198 GAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDVVSWNAMISGYVRCG 257

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY--AKRYHLEKNVIL 200
             K+ + LF QMQ +G KP+   ++S+L+ACA  G +  G  +H +   +   +     L
Sbjct: 258 SRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHGFLSGRFSRIGPTTAL 317

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             A++DMY+KCG + SAL VF  + +K+   WN++I G+A++G A +S+ +F +M++   
Sbjct: 318 GNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHATESIAVFRKMLQGNV 377

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P E TFVAVL  C+H  MV  G   F  M   Y +EP ++HY C+VD+L+R G+++EA 
Sbjct: 378 KPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAF 437

Query: 321 KFIEEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           +FI     G    + N  +W  LL ACRI+G+IE+     R+L +         VL  NI
Sbjct: 438 EFI-----GTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDASGDFVLLSNI 492

Query: 379 YKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           Y   G    +  +RKL+ ++G+ K+ G +VI+
Sbjct: 493 YASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 142/328 (43%), Gaps = 43/328 (13%)

Query: 34  PPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA--RALFDK 91
           P L + C  L  ++     VHA +V  GF  D   +  L+   ++  + GTA  R +FD+
Sbjct: 12  PALWRRCRSLRQIKQ----VHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDR 67

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
            P  D   + T++ G                   R+AVS  A MA +S   D        
Sbjct: 68  IPHPDRFMYNTLIRGAA------------HSDAPRDAVSIYARMARHSADCDL------- 108

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
                + ++P++     VL ACA +GA   G  VH++  +   E +  +  A++ M++  
Sbjct: 109 -----MTLRPDKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATL 163

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G + +A ++F+G + +DA AW+AMISG A  GD   + ELFD        P +      +
Sbjct: 164 GDLGAAAALFDGEAREDAVAWSAMISGFARRGDIGAARELFDE------SPVKDLVSWNV 217

Query: 272 TTCTHAKM--VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
               +AK+  +     LF+        +  +  +  ++    R G  ++A +  E+    
Sbjct: 218 MITAYAKLGDMAPARELFDGAP-----DRDVVSWNAMISGYVRCGSRKQAMELFEQMQAM 272

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRV 357
               D     +LLSAC   G ++ G R+
Sbjct: 273 GEKPDTVTMLSLLSACADSGDLDAGRRL 300


>gi|414885893|tpg|DAA61907.1| TPA: hypothetical protein ZEAMMB73_945776 [Zea mays]
          Length = 584

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 153/431 (35%), Positives = 247/431 (57%), Gaps = 12/431 (2%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVV 69
           P L++  +  +L  G +P+   +     +C            +HAH  K G       V 
Sbjct: 56  PHLALRLFDHLLRSGADPDPAAYELAFASCARARDRATAAQ-LHAHAAKRGLVASHRRVR 114

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA-RELFEKMPERNA 128
             L+  Y++   +  AR +FD   D D+V W  ++ GY + G  E+  R+ F +MP R++
Sbjct: 115 CRLVHAYAVCGMLPHARRVFDGGTDNDMVAWNCLLRGYAQEGGDEDLLRDFFARMPSRDS 174

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           VSW+ +++      ++ E +++FR+M   QE   +P+   LVSV++A A+LGA+  GLW 
Sbjct: 175 VSWNTVLSWCVVNGEYDEAIAVFREMLASQEC--QPDRVTLVSVVSAIAYLGALAHGLWA 232

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA-GAWNAMISGVAMNGD 244
           H+Y  R  +E    L++A+++MYSKCG +  A+ VF+ +  K +   WNAM++G   NG 
Sbjct: 233 HAYVFRKCIEVEEKLSSALINMYSKCGFIEGAVYVFDNVGGKRSLDTWNAMLAGFTANGY 292

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           ++++LELF RM  +   P + TF  VL  C+H  +V +G+  F+ MS  YG+EP + HY 
Sbjct: 293 SERALELFTRMESTRLMPNKITFNTVLNACSHGGLVEEGMKYFQRMSRFYGIEPDIAHYG 352

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C+VDL  RAGM E+AE+ I+         DA++  ALL ACR +  +E+G +V  +L E 
Sbjct: 353 CMVDLFCRAGMFEKAEEIIQTMP---MEPDASMLKALLGACRTHKNLELGKKVGHRLIEA 409

Query: 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNR 424
              D + +VL  NIY   G     +KVRKL+ + G+ K PG S +E+NGV+ EF++GD  
Sbjct: 410 AANDHAGYVLLSNIYALDGNWGGVHKVRKLMLDRGVLKTPGSSSVELNGVIHEFISGDKS 469

Query: 425 HAQAGEIYRVI 435
           H++  +IY+++
Sbjct: 470 HSRKRDIYKML 480


>gi|115450020|ref|NP_001048611.1| Os02g0830000 [Oryza sativa Japonica Group]
 gi|48716334|dbj|BAD22946.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
           Japonica Group]
 gi|113538142|dbj|BAF10525.1| Os02g0830000 [Oryza sativa Japonica Group]
 gi|125584254|gb|EAZ25185.1| hypothetical protein OsJ_08985 [Oryza sativa Japonica Group]
          Length = 500

 Score =  280 bits (717), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 17/426 (3%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM------FVHAHVVKFGFG 63
           FP+L      +     F PN YTF  L+ A   L PL +          +HA  +     
Sbjct: 64  FPRLRRIIATN----PFFPNAYTFSFLLTASASLAPLPHAASPRVLVESLHALAILVACD 119

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARELFEK 122
              +V + L+  Y+    + +AR +FD +   RDV +WT+++  YG+     +AR LF+ 
Sbjct: 120 AHAYVSNGLIHAYASCALLCSARRVFDVNVSCRDVCSWTSLLTAYGRAARLHHARALFDA 179

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP +  ++W+AI++AY     F E + +F++M    ++PN + ++SVL AC  LGA+ QG
Sbjct: 180 MPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQG 239

Query: 183 LWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            WVH++    H  + K+ ++ATA+VDMY+KCG + +A  VF G++ +D  A+ AM+SG++
Sbjct: 240 RWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQVFSGMAERDVFAYTAMVSGLS 299

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   +++ELF RM + G +P E TF+ VL+ C  A +V     +  +MSAV+G+E  +
Sbjct: 300 DHGRCVEAIELFGRMQEEGVRPNEVTFICVLSACGRAGLVGRAREILGSMSAVHGMEAGV 359

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY  +VD+L RAGMVEEA + +          D+ V GALL+AC   G  E G  V   
Sbjct: 360 EHYGSMVDVLGRAGMVEEALEVVRRMP---MRPDSYVLGALLNACVARGDTEGGEEVAAM 416

Query: 361 LAEMGITDFS-THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +AE+G+ D S   V   N+Y   G   E   VR+ + E  + K PGCS++EV+GV  EF+
Sbjct: 417 MAELGLDDRSGVQVQLSNLYAGRGKWEEVVGVRRGMEERKVVKVPGCSMVEVDGVAREFV 476

Query: 420 AGDNRH 425
           AGD  H
Sbjct: 477 AGDRSH 482



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 36/263 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++  Y+ A     +V  + +ML     PN      ++ AC  LG LE  G +VHAH+V  
Sbjct: 191 ILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQ-GRWVHAHLVAA 249

Query: 61  --GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
                +D  V ++L++ Y+    + TAR +F    +RDV  +T MV G    G    A E
Sbjct: 250 HGAMAKDGMVATALVDMYAKCGSLETARQVFSGMAERDVFAYTAMVSGLSDHGRCVEAIE 309

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF +                               MQE G++PNE   + VL+AC   G 
Sbjct: 310 LFGR-------------------------------MQEEGVRPNEVTFICVLSACGRAGL 338

Query: 179 ITQGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           + +   +       H +E  V    ++VD+  + G V  AL V   +  + D+    A++
Sbjct: 339 VGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEALEVVRRMPMRPDSYVLGALL 398

Query: 237 SGVAMNGDAKKSLELFDRMVKSG 259
           +     GD +   E+   M + G
Sbjct: 399 NACVARGDTEGGEEVAAMMAELG 421


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 241/439 (54%), Gaps = 15/439 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF-------V 53
           ++R   +   P L+   + D+      P+NY+F  L++A   L       +        V
Sbjct: 168 LLRALARGRRPHLAFGAFRDL---PLVPDNYSFTFLVRAATALAAAAASALDAALIAGSV 224

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA  ++ G   DP V S  +  Y+    +G ARA F +    DVV  T MV      G+ 
Sbjct: 225 HASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIASPDVVCVTAMVGALATGGEA 284

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           + ARELF+ MP+R+ V+W+A++A Y      +E L LF +M+  G    E  LVS LTAC
Sbjct: 285 DAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTAC 344

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LGA+ +G WVHS A    +  +V L TA++DMYSKCG V +A+ VF+ +  ++   W 
Sbjct: 345 AQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWT 404

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           + +SG+AMNG  +  L LF RM  +G +P   TFV VL  C+ A +V +G   F++M + 
Sbjct: 405 SAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCSMAGLVDEGRACFDSMKSN 464

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G++P LEHY C+VDL  RAG +++A  FI    G        VWGALL+A RI+  +E+
Sbjct: 465 HGIDPWLEHYGCMVDLYGRAGRLDDAVNFIN---GMPLEPHEGVWGALLNASRIHKNVEL 521

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           G     KL  +   + + HVL  NIY ++  W   +N VR ++   G+KK PGCS IEV 
Sbjct: 522 GKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSN-VRNMMKAKGVKKVPGCSAIEVG 580

Query: 413 GVVEEFLAGDNRHAQAGEI 431
           G V EF  G   H +  EI
Sbjct: 581 GKVHEFFVGGKTHPRHKEI 599


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 153/370 (41%), Positives = 220/370 (59%), Gaps = 7/370 (1%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D    +S++  Y++   +G+A+ LF++      VTWT+MV G+ + GD E+AR +FE+M
Sbjct: 75  RDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEM 134

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           PER+ VSW+A+++         E L LFR M E G  PN   +VSVL+AC   GA+  G 
Sbjct: 135 PERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGK 194

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           WVH + ++  L  +  L TA+VDMY+KCG V  AL VF G+  ++   WNAMI+G+AMNG
Sbjct: 195 WVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLAMNG 254

Query: 244 DAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
            + K+L++F +M  +GT  P E TFV VL  C+HA  V  G   F  +   YGVE  LEH
Sbjct: 255 YSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEH 314

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           YAC+VDLLAR+G ++EA K I E        D  VW ALL  CR++  +++   V   ++
Sbjct: 315 YACMVDLLARSGHLQEAHKLITEMP---MKPDVVVWRALLGGCRLHKNVKMAENV---IS 368

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           EM  T    HVL  N+Y   G       VR+ +   G++K PGCS +E++G + EF++GD
Sbjct: 369 EMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPGCSSVEMDGSIHEFISGD 428

Query: 423 NRHAQAGEIY 432
             H    +I+
Sbjct: 429 KSHPSYDDIH 438



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 35/258 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G +    P  ++  +  M++ GF PN  T   ++ AC   G LE  G +VH  V K 
Sbjct: 145 MISGCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALET-GKWVHVFVEKK 203

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D F+ ++L++ Y+    +  A  +F     R+  TW  M++G              
Sbjct: 204 RLRWDEFLGTALVDMYAKCGAVELALEVFTGLRARNTCTWNAMINGLA------------ 251

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
                         M  YS      + L +FRQM+  G + P+E   V VL AC+H G +
Sbjct: 252 --------------MNGYS-----AKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGFV 292

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMIS 237
             G    ++  ++Y +E  +     +VD+ ++ GH+  A  +   +  K D   W A++ 
Sbjct: 293 DAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALLG 352

Query: 238 GVAMNGDAKKSLELFDRM 255
           G  ++ + K +  +   M
Sbjct: 353 GCRLHKNVKMAENVISEM 370



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A +  Y   G V  A  VF+G+  +D  ++N+MI G A++GD   +  LF+R++     P
Sbjct: 51  AFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLA----P 106

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENM 290
           T  T+ +++     A  V     +FE M
Sbjct: 107 TPVTWTSMVAGFCRAGDVESARRVFEEM 134


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 141/355 (39%), Positives = 217/355 (61%), Gaps = 4/355 (1%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A +LF++ P RDV++W+ M+DGY K+GD + AR LF++MP+++ V+++ IMA Y++   +
Sbjct: 275 AHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMAGYAQNGYY 334

Query: 145 KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            E L +F +MQ +  + P+E+ LV  L+A + LG + +   +H+Y     +     +A A
Sbjct: 335 TEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHNYFLENGISVTGKVAVA 394

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMYSKCG + +A+ +F+G+  K    WNAMISG+A NG  K +  +   M +   +P 
Sbjct: 395 LIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKLAFGMLLEMHRLSVKPD 454

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TF+ VL  C HA +V++GL  FE M  V+ +EP+L+HY C+VD+L +AG+VE A KFI
Sbjct: 455 GITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMVDILGKAGLVEGALKFI 514

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           EE    +   D  +W  LLSAC+ +    +G  + + L  M   + S++VL  NIY   G
Sbjct: 515 EEM--PIEPNDI-IWRTLLSACQNHENFTIGELIAKHLMTMDSCNSSSYVLLSNIYARLG 571

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
               A+KVR ++ +  + K PGCS IE+ GVV EFL  D  H    EIY V+  F
Sbjct: 572 LWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHPYVSEIYSVLDGF 626



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 176/347 (50%), Gaps = 18/347 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ Y   N P  ++  +  ML+ GF  + ++F  ++KAC  +  +E  G  +H  ++K 
Sbjct: 96  VIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEE-GKQIHGLLMKL 154

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G + F+++ L+  Y     +  AR +FD+ P +D V++ +M+DGY K G  + ARELF
Sbjct: 155 EIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARELF 214

Query: 121 EKMP--ERNAVSWSAIMAAYSRISD-FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + MP  ++N +SW++++  +++  D     L LF +M        E  LVS  T      
Sbjct: 215 DSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMP-------ERDLVSWNTIIGGFA 267

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
              +  + HS   R   +++VI  + ++D Y+K G +  A ++F+ + +KD  A+N +++
Sbjct: 268 KCGRIEFAHSLFNRMP-KRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDVVAFNTIMA 326

Query: 238 GVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           G A NG   ++LE+F  M + S   P ETT V  L+  +    V    ++  N     G+
Sbjct: 327 GYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASM-HNYFLENGI 385

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
               +    ++D+ ++ G +E A    +    G+     + W A++S
Sbjct: 386 SVTGKVAVALIDMYSKCGSIENAILIFD----GVDQKGIDHWNAMIS 428



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 109/251 (43%), Gaps = 20/251 (7%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+A++ +YS  ++    L LF  M E G   ++     +L ACA +  + +G  +H    
Sbjct: 93  WNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCLVEEGKQIHGLLM 152

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +  +  N+ L   ++ MY +CG +  A  VF+ +  +D+ ++N+MI G   +G    + E
Sbjct: 153 KLEIGSNLFLLNCLIAMYLRCGDIEFARQVFDRMPIQDSVSYNSMIDGYVKSGTIDLARE 212

Query: 251 LFDRMVKSGTQPTE-TTFVAVLTTCTHAKMVRDG----LNLFENMSAVYGVEPQLEHYAC 305
           LFD M      P E    ++  +        +DG    L LFE M      E  L  +  
Sbjct: 213 LFDSM------PLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMP-----ERDLVSWNT 261

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++   A+ G +E A          +   D   W  ++      G I+V   ++ ++ +  
Sbjct: 262 IIGGFAKCGRIEFAHSLFNR----MPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKD 317

Query: 366 ITDFSTHVLSY 376
           +  F+T +  Y
Sbjct: 318 VVAFNTIMAGY 328



 Score = 38.1 bits (87), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 32/145 (22%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G  +    KL+    L+M  +  +P+  TF  ++ AC             HA +VK 
Sbjct: 426 MISGMARNGLGKLAFGMLLEMHRLSVKPDGITFIGVLNAC------------AHAGLVKE 473

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G            E    VHK+           +  +  +  MVD  GK G  E A +  
Sbjct: 474 GL--------ICFELMRKVHKL-----------EPKLQHYGCMVDILGKAGLVEGALKFI 514

Query: 121 EKMP-ERNAVSWSAIMAAYSRISDF 144
           E+MP E N + W  +++A     +F
Sbjct: 515 EEMPIEPNDIIWRTLLSACQNHENF 539


>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 158/459 (34%), Positives = 264/459 (57%), Gaps = 19/459 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+G+ ++   K S+  +  M   G E N +T+  L+ ACV    L   G  +H  V+  
Sbjct: 96  IIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACV-RSRLFREGEQIHGRVLVN 154

Query: 61  GFGEDPFVVSSLLEFYSLVHKMG-----TARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           G+  + +V ++L+  Y+     G      A  LFD+ PD +VV W +++ GY + GDF+ 
Sbjct: 155 GYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMPDSNVVGWNSLLAGYVRRGDFDG 214

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR++F++MPERN  +W+ ++A +++    K  LSLF QM+  G++ ++  LV+ L+ACA 
Sbjct: 215 ARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSACAE 274

Query: 176 LGAITQGLWVHSYAKR----YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           LG +T G W+H Y +R     HL   V L  A++ MY+ CG +  A  +FE I  ++  +
Sbjct: 275 LGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGAMDLAYKLFEEIPQRNTVS 334

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSG---TQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
           W+++I+G A  G   +++ +F  M+ SG    +P E TF+  LT C+HA ++ DG+ LF+
Sbjct: 335 WSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQ 394

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
           +M   +GV PQ+EHY C+VDLL+RAG++ EA   IE     +   +A VWGALLS CR++
Sbjct: 395 SMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESM--PMKPNNA-VWGALLSGCRLH 451

Query: 349 GKIEVGNRVWRKLA-EMGITDFST--HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405
              E+ + V + L+ E+   + +    +L  N+Y   G   +   VR+ + + G+KK  G
Sbjct: 452 KNDEIVSHVAKHLSFEIDPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSG 511

Query: 406 CSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
            S IE+NGV+  F+ G+  H     IY ++ +  + + +
Sbjct: 512 RSWIEINGVLCSFMVGEETHKDVNLIYEMLGNITRQTQM 550



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 115/248 (46%), Gaps = 17/248 (6%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           ++K+CV    L       HA +V  GF +  ++++ LL  Y     +G+A+ +F+     
Sbjct: 33  VLKSCVSFRNLAK----THAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAP 88

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSAIMAAYSRISDFKEVLSLF 151
               W  ++ G+ +    + + ELF++M     E N  ++S +++A  R   F+E   + 
Sbjct: 89  STTVWNQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIH 148

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLG-----AITQGLWVHSYAKRYHLEKNVILATAVVD 206
            ++   G   N     +++   A+ G      + + L++         + NV+   +++ 
Sbjct: 149 GRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKRALYLFDEMP----DSNVVGWNSLLA 204

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
            Y + G    A  VF+ +  ++   W  M++G A NG  K +L LFD+M ++G +  +  
Sbjct: 205 GYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVA 264

Query: 267 FVAVLTTC 274
            VA L+ C
Sbjct: 265 LVAALSAC 272



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           +KN IL   ++ +Y   G + SA  VFE I+      WN +I G   +  +KKS+ELF R
Sbjct: 57  QKNYIL-NHLLSLYISFGSLGSAQKVFEDITAPSTTVWNQIIKGHTRSKTSKKSIELFKR 115

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           M  +G +    T+  +L+ C  +++ R+G
Sbjct: 116 MTLAGVEANGFTYSFLLSACVRSRLFREG 144


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 245/441 (55%), Gaps = 35/441 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+   +   P   V  Y  ML     P+NYTF  +IK+C  L  L+  G  VH H V  
Sbjct: 78  VIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALK-IGKGVHCHAVVS 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D +V ++L+ FYS                               K GD E AR++F
Sbjct: 137 GFGLDTYVQAALVTFYS-------------------------------KCGDMEAARQVF 165

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPE++ V+W+++++ + +    ++ + +F QM+E G +P+ +  VS+L+ACA  GAI+
Sbjct: 166 DRMPEKSVVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAIS 225

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH Y     L+ NV L TA++++YS+CG V  A  VF+ +   +  AW AMIS   
Sbjct: 226 LGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYG 285

Query: 241 MNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            +G  K++++LF++M    G+ P   TFVAVL+ C HA +V DG ++++ M+  Y + P 
Sbjct: 286 THGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPG 345

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA-NVWGALLSACRIYGKIEVGNRVW 358
           +EH+ C+VD+L RAG ++EA +FI++ +   G   A  +W A+L AC+++   ++G  + 
Sbjct: 346 VEHHVCIVDMLGRAGFLDEAYRFIQQ-LDATGNATAPALWTAMLGACKMHRNYDLGVEIA 404

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           ++L  +   +   HV+  NIY  +G   E + +R  +    ++K+ G S+IEV      F
Sbjct: 405 KRLIALEPENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLF 464

Query: 419 LAGDNRHAQAGEIYRVIHSFL 439
             GD  H + GEIYR + + +
Sbjct: 465 SMGDESHQETGEIYRYLETLI 485



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 147/321 (45%), Gaps = 35/321 (10%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF  +P  +   +++++ + S++      ++ +R+M    + P+     SV+ +CA L A
Sbjct: 63  LFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSA 122

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  VH +A       +  +  A+V  YSKCG + +A  VF+ +  K   AWN+++SG
Sbjct: 123 LKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSG 182

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
              NG A+ ++ +F +M +SG +P   TFV++L+ C     +  G  + + + +  G++ 
Sbjct: 183 FEQNGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVS-EGLDV 241

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEE------------------------------KMG 328
            ++    +++L +R G V +A +  ++                              KM 
Sbjct: 242 NVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKME 301

Query: 329 GLGGGDAN--VWGALLSACRIYGKIEVGNRVWRKLAEMG--ITDFSTHVLSYNIYKEAGW 384
              G   N   + A+LSAC   G +E G  V++++ E    I     HV   ++   AG+
Sbjct: 302 DDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGF 361

Query: 385 DMEANKVRKLISETGMKKKPG 405
             EA +  + +  TG    P 
Sbjct: 362 LDEAYRFIQQLDATGNATAPA 382


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/397 (37%), Positives = 228/397 (57%), Gaps = 5/397 (1%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           PN Y +  LIKAC  L  + + G+ VHA V+K G   +  + +SL++ Y    +  +A  
Sbjct: 111 PNEYIYTSLIKACAGLEAIAD-GLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQ 169

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           +FD+ P RDVV+W TMV GY   GD E+AR +F++M ER+ +SW+A++  Y +   + + 
Sbjct: 170 VFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDA 229

Query: 148 LSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           + +F +MQ+VG + P++  LVSVL+ACAH+GA+  G W+  +        N+ L  A++D
Sbjct: 230 IEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALID 289

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY+KCG +  A  +F+G+  +D  +W+ MI G   +GDA ++   + +M++ G +P E T
Sbjct: 290 MYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVT 349

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           F+ +L+ C+HA +V  G+ LF  M   Y + P++ HY CV+DLL+RAG ++EAE  I   
Sbjct: 350 FMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSM 409

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386
                  +  VWGALL  CRI+     G RV + L E+      ++V         G   
Sbjct: 410 P---IEPNVIVWGALLGGCRIHKDFRRGERVAQHLLELDSEYTGSYVYIAGAKASVGRVD 466

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
           +A      +   G+ K PGCS IEV+  V EF   DN
Sbjct: 467 DAANCWLRMQHKGIIKDPGCSKIEVHNTVHEFKECDN 503



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 128/289 (44%), Gaps = 39/289 (13%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQ-EVGMKPNESGLVSV 169
           +  +A+ +F ++P  N  SW+AI+ A+     ++  L+ F RQ+       PNE    S+
Sbjct: 60  NLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNEYIYTSL 119

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK------------------- 210
           + ACA L AI  GL VH+   +  L+ N+ L T++VDMY K                   
Sbjct: 120 IKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQVFDEMPLRDV 179

Query: 211 ------------CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK- 257
                       CG + SA  VF+ +  +D  +WNAMI G   NG    ++E+F  M K 
Sbjct: 180 VSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKV 239

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G  P + T V+VL+ C H   +  G    +      G    L     ++D+ A+ G +E
Sbjct: 240 GGVVPDDVTLVSVLSACAHVGALDFG-RWIDRFVGWRGRGLNLYLGNALIDMYAKCGTME 298

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           EA +  +    G+   D   W  ++     +G  +     + K+ E G+
Sbjct: 299 EARRIFD----GMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGV 343



 Score = 42.0 bits (97), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 33/180 (18%), Positives = 78/180 (43%), Gaps = 7/180 (3%)

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK- 257
           ++A  ++   +   +++ A  +F  + N +  +WNA+I      G  + +L  F+R +  
Sbjct: 46  LIAVKLIGACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSL 105

Query: 258 -SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
            S   P E  + +++  C   + + DGL +   +    G++  +     +VD+  +    
Sbjct: 106 PSAPNPNEYIYTSLIKACAGLEAIADGLKVHA-VVIKSGLDNNIHLGTSLVDMYFKFREP 164

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             A +  +E    +   D   W  ++S   + G +E   RV+ ++ E  +  ++  +  Y
Sbjct: 165 ASAGQVFDE----MPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGY 220



 Score = 39.7 bits (91), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 32/130 (24%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML+ G +PN  TF  L+ AC             HA +V  G      + S +++ Y 
Sbjct: 335 YSKMLECGVKPNEVTFMGLLSAC------------SHAGLVDKGIE----LFSRMIQEYR 378

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMA 136
           +V K+G                +  ++D   + G  + A +L   MP E N + W A++ 
Sbjct: 379 IVPKVG---------------HYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGALLG 423

Query: 137 AYSRISDFKE 146
                 DF+ 
Sbjct: 424 GCRIHKDFRR 433


>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 531

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 229/434 (52%), Gaps = 12/434 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPL---ENFGMFVHAHVVKFGFGEDPFVVSSLLE 74
           + DM+  GF P+N     ++ AC   G      + G  VHA +V  G   D FV + L+ 
Sbjct: 100 FQDMIADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIR 159

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            Y    +M  AR +FD  P +  + W TMV  Y +  D E A  LF  MP R+ VSW+ +
Sbjct: 160 VYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTV 219

Query: 135 MAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           +A Y  +   KE L LFRQM       + PN   + +VL+ACA  G +  G+WVH Y  +
Sbjct: 220 IAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYIDK 279

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLE 250
             +  N  L   ++DMY+KCG +  AL VFE    K D  +W  +I G+AM+G A   L 
Sbjct: 280 NQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDVLR 339

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           +F  M  SG  P + TFV VL  C H  +V +GL+ F +M   Y + P++EHY C++DLL
Sbjct: 340 MFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLL 399

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
            R G + EA + I+         +  +WGA LSAC+++  +E+G     ++  +   D  
Sbjct: 400 GRVGRLPEAYRMIQTMP---MKPNMVIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPW 456

Query: 371 THVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             V+  ++Y +A  W   A + R+ ++   MKK PGCS + ++G V EF+AG N+H    
Sbjct: 457 ARVMMSSMYAKAQDWSGLARE-RREMNSLQMKKTPGCSSVALDGEVHEFVAGGNQHPLCA 515

Query: 430 EIYRVIHSFLKMSN 443
           EI  V+ +    S+
Sbjct: 516 EICSVLETVEAQSH 529



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 74/306 (24%), Positives = 133/306 (43%), Gaps = 53/306 (17%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  YG +G   +AR+LF++MP ++ V+ +A+  A++      + L LF+ M   G  
Sbjct: 50  TALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQDMIADGFM 109

Query: 161 PNESGLVSVLTACAHLGAIT----QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
           P+   L  VL AC   G+ T     G  VH++     +E +V ++T ++ +Y + G +  
Sbjct: 110 PDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTV 169

Query: 217 ALSVFEGISNKDAGAWNAM-------------------------------ISGVAMNGDA 245
           A  VF+ +  K   AWN M                               I+G  + G  
Sbjct: 170 ARRVFDSMPTKSTIAWNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRC 229

Query: 246 KKSLELFDRMVKSGT---QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           K++L LF +MV   +    P   T   VL+ C  A  +  G+ +      +Y  + Q+  
Sbjct: 230 KEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVH-----LYIDKNQMND 284

Query: 303 YA----CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
                 C++D+ A+ G +++A +  E+     G  D   W  ++    ++G+    N V 
Sbjct: 285 NGTLDRCLIDMYAKCGSIDKALQVFEK---APGKRDLYSWTTVICGLAMHGR---ANDVL 338

Query: 359 RKLAEM 364
           R  + M
Sbjct: 339 RMFSMM 344


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 239/434 (55%), Gaps = 37/434 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + +M+     P+  T   ++ AC   G +E  G  VH+ +   
Sbjct: 237 MISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIE-LGRQVHSWIDDH 295

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V+SL++ YS                               K G+ E A  LF
Sbjct: 296 GFGSNLKIVNSLMDLYS-------------------------------KCGELETACGLF 324

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G +PN+  ++S+L ACAHLGAI 
Sbjct: 325 EGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAID 384

Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMY+KCG + +A  VF  I +K   +WNAMI G
Sbjct: 385 IGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 444

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  + ++F RM K G +P + TFV +L+ C+ + M+  G ++F  M+  Y + P
Sbjct: 445 FAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITP 504

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC+I G +E+G    
Sbjct: 505 KLEHYGCMIDLLGHSGLFKEAEEMINNME---MEPDGVIWCSLLKACKIRGNVELGESFA 561

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           + L ++   +   +VL  NIY  AG   E  K+R L+++ GMKK PGCS IE++ VV EF
Sbjct: 562 QNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEF 621

Query: 419 LAGDNRHAQAGEIY 432
           + GD  H +  EIY
Sbjct: 622 IIGDKFHPRNREIY 635



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/376 (30%), Positives = 212/376 (56%), Gaps = 24/376 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  ++  Y+ M+ +G  PN+YTFP L+K+C      +  G  +H HV+K 
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKE-GQQIHGHVLKL 163

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D FV +SL+  Y    ++  AR +FD+SP RDVV++T ++ GY   G  E+A++LF
Sbjct: 164 GYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLF 223

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+   ++KE L LF++M +  ++P+ES +V+V++ACA  G+I 
Sbjct: 224 DEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIE 283

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  +++D+YSKCG + +A  +FEG+  KD  +WN +I G  
Sbjct: 284 LGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYT 343

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG----------LNLFENM 290
                K++L LF  M++SG +P + T +++L  C H   +  G          L    N 
Sbjct: 344 HMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNA 403

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           S++            ++D+ A+ G +E A +     +        + W A++    ++G+
Sbjct: 404 SSL---------RTSLIDMYAKCGDIEAAHQVFNSIL----HKSLSSWNAMIFGFAMHGR 450

Query: 351 IEVGNRVWRKLAEMGI 366
            +    ++ ++ ++GI
Sbjct: 451 ADAAFDIFSRMRKIGI 466



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 145/344 (42%), Gaps = 68/344 (19%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
           N+    L+  C  L  L      +HA ++K G     + +S LLE   +           
Sbjct: 33  NHPSLSLLHNCKTLQSLR----LIHAQMIKTGLHNTNYALSKLLELCVI----------- 77

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
             SP  D + +   V               FE + E N + W+ +   ++  SD    L 
Sbjct: 78  --SPHFDGLPYAISV---------------FETIQEPNLLIWNTMFRGHALSSDPVSALK 120

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQG---------------LWVHS-----YA 189
           L+  M  +G+ PN      +L +CA   A  +G               L+VH+     Y 
Sbjct: 121 LYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYV 180

Query: 190 KRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +   LE           ++V+  TA++  Y+  G++ SA  +F+ I  KD  +WNAMISG
Sbjct: 181 QNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISG 240

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A  G+ K++LELF  M+K+  +P E+T V V++ C  +  +  G  +   +   +G   
Sbjct: 241 YAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD-HGFGS 299

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            L+    ++DL ++ G +E A    E    GL   D   W  L+
Sbjct: 300 NLKIVNSLMDLYSKCGELETACGLFE----GLLYKDVISWNTLI 339


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/376 (38%), Positives = 225/376 (59%), Gaps = 5/376 (1%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
           +D    +++L+ Y    +M  A  LF+  P+R+VV+W+TMV GY K GD E AR LF++M
Sbjct: 41  KDAVSWNTILDGYVKAGEMNKAFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRM 100

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           P +N VSW+ I++ Y+     K+ +  F QM+E G+KP++  ++S+L +CA  G +  G 
Sbjct: 101 PVKNLVSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGK 160

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            VH+  +R   + +V ++ A+VDMY+KCG V  ALSVF G+S KD  +WN M+ G+AM+G
Sbjct: 161 RVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHG 220

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
             +K+L+LF  M + G +P + T VAVL  C HA  V +G+  F NM   YG+ P +EHY
Sbjct: 221 HGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHY 280

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
            C+VDLL R G ++EA + ++         +  +WG LL ACR++  + +   V   L +
Sbjct: 281 GCMVDLLGRGGRLKEAYRLVQSMP---VEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFK 337

Query: 364 MGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           +  +D   + L  NI+  AG W   AN VR  +   G++K  G S IEV+  V EF   D
Sbjct: 338 LEPSDPGNYSLLSNIFASAGDWSSVAN-VRLQMKNFGIQKPSGASSIEVDDEVHEFTVFD 396

Query: 423 NRHAQAGEIYRVIHSF 438
             H ++ +IY++I+  
Sbjct: 397 KSHPKSDKIYQMINRL 412



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 118/275 (42%), Gaps = 36/275 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY      K ++  +  M + G +P++ T   ++ +C   G L   G  VH  + + 
Sbjct: 111 IVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLL-GLGKRVHTSIERI 169

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            +     V ++L++ Y+   ++  A ++F+    +D+V+W  M+ G    G  E A    
Sbjct: 170 RYKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKA---- 225

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L LF  M++ G +P++  LV+VL AC H G + 
Sbjct: 226 ---------------------------LQLFSIMRQEGFRPDKVTLVAVLCACVHAGFVD 258

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G+ + ++  + Y +  ++     +VD+  + G +  A  + + +    +   W  ++  
Sbjct: 259 EGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGA 318

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
             M+     + E+ D + K   +P++    ++L+ 
Sbjct: 319 CRMHNAVGLAEEVLDCLFK--LEPSDPGNYSLLSN 351


>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 534

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 250/439 (56%), Gaps = 20/439 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G++ +      V  Y  M+     P+NY    ++KAC +    E     +H+ V+K 
Sbjct: 98  MIDGFVSSGRSADGVSLYHRMIHSSVLPDNYVITSVLKACGLDECRE-----IHSQVLKL 152

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG    V   L+E Y    ++  A+ +FD+ PDRD V  T M++ Y + G  + A ELF
Sbjct: 153 GFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSECGCIKEALELF 212

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI- 179
           + +  ++ V W+A++    R  +  + L LFR+MQ           +SV    A +    
Sbjct: 213 QDVKIKDTVCWTAMIDGLVRNREMNKALELFREMQ-----------LSVFYLPARIWVRW 261

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           + G  VHS+ +   +E +  +  A+++MYS+CG ++ A  VF+G+ +KD  ++N MISG+
Sbjct: 262 SSGAGVHSFVENQKMELSNFVGNALINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGL 321

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G + +++ +F  MV  G +P + T VA+L  C+H  ++  GL +F +M  V+ VEPQ
Sbjct: 322 AMHGASVEAINVFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQ 381

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL R G +EEA +FIE     L   D  + GALLSAC+I+G +E+G ++ +
Sbjct: 382 IEHYGCIVDLLGRVGRLEEAYRFIENM---LIEPDHIMLGALLSACKIHGNMELGEKIAK 438

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L E    D  T+VL  +IY  +G   E+ ++R+ + E+G++K+PGCS IEV+  + EF 
Sbjct: 439 RLFESENPDSGTYVLLSHIYASSGKWKESTEIRESMRESGIEKEPGCSTIEVDNQIHEFH 498

Query: 420 AGDNRHAQAGEIYRVIHSF 438
            GD  H +   IY+ +   
Sbjct: 499 VGDIAHPRKEAIYQRLQEL 517



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 4/203 (1%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +++    +D FVV  L+   S +  +  A  +F    + +V  +T M+DG+   G 
Sbjct: 48  IHAKIIRTFHDQDAFVVFELIRVCSTLDSIDYAYDVFRYVSNPNVYLYTAMIDGFVSSGR 107

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
             +   L+ +M   + +  + ++ +  +     E   +  Q+ ++G   + S  + ++  
Sbjct: 108 SADGVSLYHRMIHSSVLPDNYVITSVLKACGLDECREIHSQVLKLGFGSSRSVGLKLMEI 167

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
               G +     V         +++ ++AT +++ YS+CG +  AL +F+ +  KD   W
Sbjct: 168 YGKSGELADAKKVFDEMP----DRDQVVATVMINCYSECGCIKEALELFQDVKIKDTVCW 223

Query: 233 NAMISGVAMNGDAKKSLELFDRM 255
            AMI G+  N +  K+LELF  M
Sbjct: 224 TAMIDGLVRNREMNKALELFREM 246



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 3/109 (2%)

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           L+S+L  C +   +     +H+   R   +++  +   ++ + S    +  A  VF  +S
Sbjct: 32  LISLLRNCKNNAQVPS---IHAKIIRTFHDQDAFVVFELIRVCSTLDSIDYAYDVFRYVS 88

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           N +   + AMI G   +G +   + L+ RM+ S   P      +VL  C
Sbjct: 89  NPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHSSVLPDNYVITSVLKAC 137


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 150/427 (35%), Positives = 241/427 (56%), Gaps = 6/427 (1%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P L++  +  +L  G +P+   +   +  C            +H H  K G      V +
Sbjct: 56  PHLALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQ-LHGHAAKRGAASHRRVRN 114

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
            L+  YS+   +  AR +FD  P+ D++ W  ++ GY +  D    RE F +MP R++VS
Sbjct: 115 GLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVS 174

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           W+ ++A      + +E +++FR+M      +P+   LVSV++A A+LGA+ QGLW H+Y 
Sbjct: 175 WNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYV 234

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFE-GISNKDAGAWNAMISGVAMNGDAKKS 248
            R  +E +  L++A+++MYSKCG +  A+ VFE   + +    WNAM++G   +G ++++
Sbjct: 235 CRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSERA 294

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           LELF RM  SG  P + TF  +L  C+H   V +G+  FE M+    +EP + HY C+VD
Sbjct: 295 LELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVD 354

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           L  RAG+ E+AE+ I+  M  +   DA VW AL+ ACR Y   E+G +   +L E    D
Sbjct: 355 LFCRAGLFEKAEEMIQ--MMPM-EPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPND 411

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
            + +VL  NIY   G      KVRKL+   G++K PG S IE++GV+ EF++GD  H++ 
Sbjct: 412 HAGYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRK 471

Query: 429 GEIYRVI 435
            ++Y ++
Sbjct: 472 RDVYEML 478



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 32/146 (21%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G+  +   + ++  +  M   GF PN  TF  L+ AC       + G FV   +  F
Sbjct: 281 MLAGFTASGCSERALELFTRMESSGFVPNKITFNTLLNAC-------SHGGFVEEGIGYF 333

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                    R     S + D+  +  MVD + + G FE A E+ 
Sbjct: 334 ------------------------ERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMI 369

Query: 121 EKMP-ERNAVSWSAIMAAYSRISDFK 145
           + MP E +A  W A++ A    S+F+
Sbjct: 370 QMMPMEPDAAVWKALVGACRTYSNFE 395


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 248/440 (56%), Gaps = 45/440 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY++    K ++  + +M+ M    P+  T   ++ AC     +E  G  VH+ +  
Sbjct: 192 MISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE-LGRHVHSWIND 250

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  +  +V++L++ YS                               K G+ E A EL
Sbjct: 251 HGFASNLKIVNALIDLYS-------------------------------KFGEVETACEL 279

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACAHLGAI
Sbjct: 280 FDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 180 TQGLWVHSYAKRYHLEKNVI-----LATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWN 233
             G W+H Y  +    K V+     L T+++DMY+KCG + +A  VF+  +SN+    WN
Sbjct: 340 DIGRWIHVYINKK--LKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWN 397

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMISG AM+G A  + ++F RM  +G +P + TFV +L+ C+H+ M+  G N+F +M+  
Sbjct: 398 AMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRG 457

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           Y + P+LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC+I+G +E+
Sbjct: 458 YEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP---MEPDGVIWCSLLKACKIHGNLEL 514

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK-PGCSVIEVN 412
           G    +KL ++   +  ++VL  NIY  AG   E  K+R L+++ GMKKK PGCS IE++
Sbjct: 515 GESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEID 574

Query: 413 GVVEEFLAGDNRHAQAGEIY 432
            VV EF+ GD  H Q  EIY
Sbjct: 575 SVVHEFIIGDKLHPQNREIY 594



 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 209/369 (56%), Gaps = 7/369 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  ++  YL M+ +G  P++YTFP L+K+C     +   G  +H HV+K 
Sbjct: 60  MFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCA-KSKIRKEGQQIHGHVLKL 118

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V +SL+  Y+   ++  AR +FD S  RDVV++T ++ GY   G  E+A++LF
Sbjct: 119 GFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLF 178

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAI 179
           +++P ++ VSW+A+++ Y    ++KE L LF++M  +  ++P+ES +V+V++ACA   +I
Sbjct: 179 DEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSI 238

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VHS+   +    N+ +  A++D+YSK G V +A  +F+G+ NKD  +WN +I G 
Sbjct: 239 ELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGY 298

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVE 297
                 K++L LF  M++SG  P + T +++L  C H   +  G  ++++ N      V 
Sbjct: 299 THMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVT 358

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
                   ++D+ A+ G ++ A++  +  M        + W A++S   ++G+      +
Sbjct: 359 NVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRS---LSTWNAMISGFAMHGRANAAFDI 415

Query: 358 WRKLAEMGI 366
           + ++   GI
Sbjct: 416 FSRMRMNGI 424



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 140/322 (43%), Gaps = 65/322 (20%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K G     + +S LLEF  +             SP  D                
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVV-------------SPHFD---------------G 38

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F  A  +F+ + E N + W+ +   ++  SD    L L+  M  +G+ P+      +L +
Sbjct: 39  FPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKS 98

Query: 173 CAHLGAITQG---------------LWVHS-----YAKRYHLE-----------KNVILA 201
           CA      +G               ++VH+     YA+   LE           ++V+  
Sbjct: 99  CAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSY 158

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF-DRMVKSGT 260
           TA++  Y   G++ SA  +F+ I  KD  +WNAMISG    G+ K++LELF + M+ +  
Sbjct: 159 TALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNV 218

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P E+T V V++ C  +  +  G ++   ++  +G    L+    ++DL ++ G VE A 
Sbjct: 219 RPDESTMVTVVSACAQSDSIELGRHVHSWIND-HGFASNLKIVNALIDLYSKFGEVETAC 277

Query: 321 KFIEEKMGGLGGGDANVWGALL 342
           +  +    GL   D   W  L+
Sbjct: 278 ELFD----GLWNKDVISWNTLI 295


>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 551

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/447 (35%), Positives = 247/447 (55%), Gaps = 38/447 (8%)

Query: 1   MIRGYMQANFPKLSVFCYL-DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++RGY +++         L  ML+ G  P+ YTF  L+KAC      E  G   H   VK
Sbjct: 93  LLRGYARSSDGAAEAARVLARMLEEGVAPDTYTFVSLLKACAAARAGEE-GRQAHGVAVK 151

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G  +  +V+ +L+  Y+                               + GD  +AR +
Sbjct: 152 TGAADHEYVLPTLINMYA-------------------------------ECGDARSARAM 180

Query: 120 FEKMPERNAV-SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           F ++P  + V S++A++ A  R S   E L LFR+MQ  G+KP    + SVL+ACA LGA
Sbjct: 181 FGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALLGA 240

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G W+H Y ++  L+  V + TA++DMY KCG +  A+ VF+G+ ++D  AW+ MI  
Sbjct: 241 LELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQGMESRDRQAWSVMIVA 300

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A +   ++++ LF+ M K G +P   TF+ VL  C+H+ MV +GL  F++M   YG+ P
Sbjct: 301 YANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVP 359

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            ++HY CV DLLAR+G +E+A KFI+E         A +W  LLSAC  +G +++G RV+
Sbjct: 360 GIKHYGCVTDLLARSGQLEKAYKFIDELP---IQPTAILWRTLLSACGSHGAVDLGKRVF 416

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            ++ E+  T  S +V+  N+    G   E N+VRKL++E G+ K PGCS IE++  V EF
Sbjct: 417 ERILELDDTHGSDYVIFSNLCANTGKWEEMNRVRKLMNEKGVVKVPGCSSIEIDNRVHEF 476

Query: 419 LAGDNRHAQAGEIYRVIHSFLKMSNLV 445
            AGD RH Q+ +  R++   ++   LV
Sbjct: 477 FAGDGRHPQSQDARRMVDQVIEQLKLV 503



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 135/313 (43%), Gaps = 39/313 (12%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           P +  C  L  L       HA  VK G G  P +V+ LL   +L  K G A A       
Sbjct: 24  PHLPHCTSLRALAQL----HAAAVKSGLGAHPALVTRLL---TLCTKQGAAPA------- 69

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSW-SAIMAAYSRISD-FKEVLSLFR 152
                                AR++F+++P    V W + ++  Y+R SD   E   +  
Sbjct: 70  -----------------HLAYARQVFDRIPTPGDVVWYNTLLRGYARSSDGAAEAARVLA 112

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           +M E G+ P+    VS+L ACA   A  +G   H  A +     +  +   +++MY++CG
Sbjct: 113 RMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECG 172

Query: 213 HVHSALSVFEGISNKDA-GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
              SA ++F  + N D   ++NAMI+    +    ++L LF  M   G +PT  T  +VL
Sbjct: 173 DARSARAMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVL 232

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           + C     +  G  + E +    G++  ++    ++D+  + G +E+A    +    G+ 
Sbjct: 233 SACALLGALELGRWIHEYVRKA-GLDSLVKVNTALIDMYGKCGSLEDAIDVFQ----GME 287

Query: 332 GGDANVWGALLSA 344
             D   W  ++ A
Sbjct: 288 SRDRQAWSVMIVA 300


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/434 (36%), Positives = 240/434 (55%), Gaps = 37/434 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + DM+     P+  T   ++ AC   G +E  G  VH  +   
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE-LGRQVHLWIDDH 295

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L++ YS                               K G+ E A  LF
Sbjct: 296 GFGSNLKIVNALIDLYS-------------------------------KCGELETACGLF 324

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++P ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACAHLGAI 
Sbjct: 325 ERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384

Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMY+KCG + +A  VF  I +K   +WNAMI G
Sbjct: 385 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 444

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  S +LF RM K G QP + TFV +L+ C+H+ M+  G ++F  M+  Y + P
Sbjct: 445 FAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTP 504

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC+++G +E+G    
Sbjct: 505 KLEHYGCMIDLLGHSGLFKEAEEMINMME---MEPDGVIWCSLLKACKMHGNVELGESFA 561

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
             L ++   +  ++VL  NIY  AG   E  K R L+++ GMKK PGCS IE++ VV EF
Sbjct: 562 ENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 621

Query: 419 LAGDNRHAQAGEIY 432
           + GD  H +  EIY
Sbjct: 622 IIGDKFHPRNREIY 635



 Score =  218 bits (555), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 112/368 (30%), Positives = 209/368 (56%), Gaps = 8/368 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  ++  Y+ M+ +G  PN+YTFP ++K+C      +  G  +H HV+K 
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE-GQQIHGHVLKL 163

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL+  Y    ++  A  +FDKSP RDVV++T ++ GY   G  ENA++LF
Sbjct: 164 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLF 223

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+   ++KE L LF+ M +  ++P+ES +V+V++ACA  G+I 
Sbjct: 224 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 283

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH +   +    N+ +  A++D+YSKCG + +A  +FE +  KD  +WN +I G  
Sbjct: 284 LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T +++L  C H   +  G  ++++ +   + GV  
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID-KRLKGVTN 402

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
                  ++D+ A+ G +E A +     +        + W A++    ++G+ +    ++
Sbjct: 403 ASSLRTSLIDMYAKCGDIEAAHQVFNSIL----HKSLSSWNAMIFGFAMHGRADASFDLF 458

Query: 359 RKLAEMGI 366
            ++ ++GI
Sbjct: 459 SRMRKIGI 466



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 68/344 (19%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
           N+    L+  C  L  L      +HA ++K G     + +S L+EF  L           
Sbjct: 33  NHPSLSLLHNCKTLQSLR----IIHAQMIKIGLHNTNYALSKLIEFCIL----------- 77

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
             SP  + + +               A  +F+ + E N + W+ +   ++  SD    L 
Sbjct: 78  --SPHFEGLPY---------------AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALK 120

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQG---------------LWVHS-----YA 189
           L+  M  +G+ PN      VL +CA   A  +G               L+VH+     Y 
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180

Query: 190 KRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +   LE           ++V+  TA++  Y+  G++ +A  +F+ I  KD  +WNAMISG
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A  G+ K++LELF  M+K+  +P E+T V V++ C  +  +  G  +   +   +G   
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD-HGFGS 299

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            L+    ++DL ++ G +E A    E     L   D   W  L+
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFER----LPYKDVISWNTLI 339


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/376 (38%), Positives = 224/376 (59%), Gaps = 5/376 (1%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D F+ + +L  Y    ++  AR +FD  P RD+V+W TM+ GY   G+   ARE+F+   
Sbjct: 22  DVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTE 81

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           +R+A SWS++++AY++    KE L L+R+M    + P+   LVSV++AC+ LGA+  G  
Sbjct: 82  DRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAE 141

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH + +   +E ++ L TA++DMY+KCG + SA  VF+ +  KD   W++MI G+A +G 
Sbjct: 142 VHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGL 201

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
             +SL LF +M+  G +P   TFV VL  CTH  +V +G   F +M+ V+G+EP +EHY 
Sbjct: 202 GHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG 261

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C+VDLL R+G VEEA + I          D  +W ALL ACRI+  +E+      KL  +
Sbjct: 262 CMVDLLGRSGHVEEARQLIRSMT---FEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVL 318

Query: 365 GITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
                  +VL  NIY +A  W+  A ++RK I    +++ PG S IE +  + EF++GD 
Sbjct: 319 DPLGDGHYVLLSNIYAQANSWEGVA-EMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDR 377

Query: 424 RHAQAGEIYRVIHSFL 439
            H ++ EIYRV+   +
Sbjct: 378 LHPRSKEIYRVLEEMM 393



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y ++   K ++  + +M      P+  T   ++ AC  LG L   G  VH  V   
Sbjct: 91  MISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALA-VGAEVHRFVESN 149

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  + ++L++ Y+    + +A+ +FD+ P++DV TW++M+ G    G         
Sbjct: 150 RIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGH------ 203

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E LSLF +M   GMKPN    V VL AC H+G ++
Sbjct: 204 -------------------------ESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVS 238

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  +  S  + + +E  V     +VD+  + GHV  A  +   ++   D   W A++  
Sbjct: 239 EGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGA 298

Query: 239 VAMNGDAK 246
             ++ + +
Sbjct: 299 CRIHKNVE 306


>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/410 (38%), Positives = 239/410 (58%), Gaps = 6/410 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA---CVILGPLENFGMFVHAHV 57
           +IRGY +++ P  SV  +  M     +P+ +TF  L+K      I  PL      +H  V
Sbjct: 66  LIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAV 125

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +K GF    FV+++L+  Y+       A  +F++    DVV+W+ +V  + + G+ E AR
Sbjct: 126 LKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELAR 185

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ++F +MPER+ VSW+ +++ Y++    +E L LFR+M++VG++P+E  +VSV++AC  LG
Sbjct: 186 QVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLG 245

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH Y         V L  A++DMY+KCG +  A  VF  +  K    WN+MIS
Sbjct: 246 DLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMIS 305

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A +G+A+ +  +F  M+ SG +P   TF+A+LT  TH   V DG  LFE+M   YGVE
Sbjct: 306 ACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVE 365

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             +EHY C+VD+L RAG +EEA K I      +   D  VWGALL+ACRIYG +E+G RV
Sbjct: 366 AGVEHYGCMVDMLGRAGRLEEAYKLITSM--SMPCNDV-VWGALLAACRIYGDVEMGERV 422

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
            +KL E+   +   ++L  +IY  AG   EA ++R+ +   G KK  GCS
Sbjct: 423 LKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCS 472



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/368 (21%), Positives = 149/368 (40%), Gaps = 40/368 (10%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK--MGTARALFDKSP 93
           + +AC+ +  L+     +HA   +        V++ +  F ++     +  A  LF +  
Sbjct: 1   MAEACLTMQALK----LIHALAFRANLHHHALVLAKIFRFAAVSPNGCLHYADRLFSQIH 56

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV-----SWSAIMAAYSRISDFKEVL 148
             +   + T++ GY K      + +LF +M  RN V     +++ ++   SR+   +  L
Sbjct: 57  QPNTFFYNTLIRGYSKSSSPSQSVQLFNQM-RRNCVDPDGFTFTFLLKGRSRM---RIDL 112

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-----------YHLEKN 197
            L     E+       G V  L  C HL        +H YA R             +  +
Sbjct: 113 PLIVASDEI------HGAVLKLGFCFHL--FVMNALIHLYAARGVPAAAHQVFNEMVGAD 164

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V+  + +V  + + G +  A  VF  +  +D  +W  M+SG A    ++++LELF  M  
Sbjct: 165 VVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRD 224

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P E   V+V++ CT    +  G  +   +    G    +     ++D+ A+ G ++
Sbjct: 225 VGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDE-NGFGWMVSLCNALIDMYAKCGCMD 283

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSY 376
            A +        +       W +++SAC  +G  E   RV+  +   GI  D  T +   
Sbjct: 284 LAWQVFNN----MERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALL 339

Query: 377 NIYKEAGW 384
             Y   GW
Sbjct: 340 TAYTHKGW 347


>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
          Length = 485

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 246/434 (56%), Gaps = 9/434 (2%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  L+ AC       E  G  +H +  K G      +V +++L  
Sbjct: 44  FSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLLHGYACKLGLERSHVMVGTAILGM 103

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS    +  AR +FD   D++ VTW TM+DGY + G  +NA ++F+KMP+R+ +SW+A++
Sbjct: 104 YSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQVDNAVDVFDKMPDRDLISWTAMI 163

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E L+ FR+MQ  G+ P+   ++S + AC +LGA++ GLWVH Y       
Sbjct: 164 TGFVKKGFHEEALAWFREMQISGVNPDYVAIISAVAACTNLGALSFGLWVHRYVLSQDFR 223

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 224 NNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNANESLVYFRKM 283

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G  P   TF   LT C+H  +V +G   F+ M   Y + P++EHY C+VDL +RAG 
Sbjct: 284 QREGFTPDGVTFTGALTACSHVGLVEEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGR 343

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVL 374
           +E+A  FI  +   +   +  V G+LL+ACR +G   +   R+ + + ++ +   S +V+
Sbjct: 344 LEDA--FIVVESMPMKPNEV-VIGSLLAACRNHGNHTILAERLMKYITDLDVKSHSNYVI 400

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG---EI 431
             N+Y   G    A+K+R+ +   G+KK+PG S IE++     F+AGD+ H +     E+
Sbjct: 401 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDDCTHVFMAGDSAHVETAYIREV 460

Query: 432 YRVIHSFLKMSNLV 445
             +I S L++   V
Sbjct: 461 LELISSDLRLQCCV 474



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 97/186 (52%), Gaps = 11/186 (5%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL--WVH 186
           VSW++ +   SR     E +  F  M+  G++PN    +++L+AC +  + ++GL   +H
Sbjct: 22  VSWTSRITLLSRDGRLAEAVREFSDMRLAGIEPNHITFIALLSACGNFPSGSEGLGYLLH 81

Query: 187 SYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
            YA +  LE+ +V++ TA++ MYSK GH+  A  VF+ I +K++  WN MI G   NG  
Sbjct: 82  GYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGYMRNGQV 141

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
             ++++FD+M          ++ A++T         + L  F  M  + GV P    Y  
Sbjct: 142 DNAVDVFDKMPDRDL----ISWTAMITGFVKKGFHEEALAWFREMQ-ISGVNPD---YVA 193

Query: 306 VVDLLA 311
           ++  +A
Sbjct: 194 IISAVA 199


>gi|347954488|gb|AEP33744.1| chloroplast biogenesis 19, partial [Aethionema grandiflorum]
          Length = 413

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 145/404 (35%), Positives = 232/404 (57%), Gaps = 6/404 (1%)

Query: 25  GFEPNNYTFPPLIKACVILGP-LENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKM 82
           GFEPN+ TF  LI  C       E  G  +H +  K G      +V +++L  YS   + 
Sbjct: 12  GFEPNHITFIALISGCGDFPTGSETLGDLLHGYACKLGLDRTHVMVGTAILGMYSKRCRF 71

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           G AR +FD   D++ VTW TM+D Y + G  + A +LF++MP+ + +SW+A++  + +  
Sbjct: 72  GKARCVFDYMEDKNSVTWNTMIDAYMRSGKVDRAVKLFDEMPDPDLISWTAMINGFVKKG 131

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             +E L  FR+MQ  G+KP+   +++ L AC +LGA++ GLWVH Y      + NV +  
Sbjct: 132 FHEEALVWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWVHRYVLSQDFKNNVRVNN 191

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M + G  P
Sbjct: 192 SLIDLYCRCGCVEFAREVFDKMEKRTVVSWNSVIVGSAANGNAHESLVYFRKMQEEGFNP 251

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
              TF   LT C+H  +V +G+  F+ M   Y + P++EHY C+VDL +RAG +E+A K 
Sbjct: 252 DAVTFTGALTACSHVGLVEEGIQYFQTMKRDYKISPRIEHYGCLVDLYSRAGRLEDALKL 311

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
           ++         +  V G+LL+ACR +G   E+  R+ + L+EM +   S +V+  N+Y  
Sbjct: 312 VQSMS---MKPNEVVIGSLLAACRTHGNNTELAERLMKHLSEMNVKGHSNYVILSNMYAA 368

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
            G    A K+R+ +   G+KK+PG S IE++     F+AGD+ H
Sbjct: 369 DGKWEGAXKMRRKMKGLGLKKQPGFSSIEIDDHTHVFMAGDSAH 412


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/454 (35%), Positives = 256/454 (56%), Gaps = 40/454 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+RG  Q+  P   V  Y  M + G +P+ +TF  L+K C  L      G  VH  V+K+
Sbjct: 84  MMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRL-EWRKTGFCVHGKVLKY 142

Query: 61  GFGEDPFVVSSLLEF-------------------------------YSLVHKMGTARALF 89
           GF  + FV ++L+ F                               Y+   ++G AR +F
Sbjct: 143 GFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRGELGVARQIF 202

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
           D+ P +D+V+W  M+ GY K G+ ENAR LF++ PE++ V+W+ ++A Y    + ++ L 
Sbjct: 203 DEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALE 262

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH-SYAKRYHLEKNVILATAVVDMY 208
           +F +M+ VG  P+E  ++S+L+ACA LG +  G  +H S ++    + +V+L  A+VDMY
Sbjct: 263 MFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMY 322

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTF 267
           +KCG +  AL VF+ +  KD   WN++I G+A +G A++S++LF  M      +P E TF
Sbjct: 323 AKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITF 382

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V V+  C+HA  V +G   F+ M   Y +EP + H+ C+VDLL RAG++ EA + I  KM
Sbjct: 383 VGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLLSEAFELI-AKM 441

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
                 +A +W  LL ACR++G +E+G     +L ++   +   +VL  NIY  AG WD 
Sbjct: 442 E--IEPNAIIWRTLLGACRVHGNVELGRLANERLLKLRRDESGDYVLLSNIYASAGEWD- 498

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNG-VVEEFL 419
            A +VRKL+ + G++K+ G S+IE +   V +FL
Sbjct: 499 GAEEVRKLMDDGGVRKEAGRSLIEADDRAVMQFL 532



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 114/262 (43%), Gaps = 13/262 (4%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    A ++F ++ E +   W+ +M   S+  +  +V+ L+ QM+  G+KP++     +L
Sbjct: 61  GAINYAHQVFAQITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLL 120

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
             C  L     G  VH    +Y  E N  +   ++  +S CG +  A S+F  +  +   
Sbjct: 121 KGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVV 180

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE--TTFVAVLTTCTHAKMVRDGLNLFE 288
           +W+A+ +G A  G+   + ++FD M      P +   ++  ++T       + +   LF+
Sbjct: 181 SWSALTAGYARRGELGVARQIFDEM------PVKDLVSWNVMITGYVKNGEMENARTLFD 234

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
                   E  +  +  ++      G   +A +  EE        D     +LLSAC   
Sbjct: 235 EAP-----EKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADL 289

Query: 349 GKIEVGNRVWRKLAEMGITDFS 370
           G ++VG ++   ++EM   D S
Sbjct: 290 GDLQVGRKLHCSISEMTRGDLS 311


>gi|125541717|gb|EAY88112.1| hypothetical protein OsI_09550 [Oryza sativa Indica Group]
          Length = 500

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/426 (37%), Positives = 243/426 (57%), Gaps = 17/426 (3%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM------FVHAHVVKFGFG 63
           FP+L      +     F PN YTF  L+ A   L PL +          +HA  +     
Sbjct: 64  FPRLRRIIATN----PFFPNAYTFSFLLTASASLAPLPHAASPRVLVESLHALAILVACD 119

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARELFEK 122
              +V + L+  Y+    + +AR +FD +   RDV +WT+++  YG+     +AR LF+ 
Sbjct: 120 AHAYVSNGLIHAYASSALLCSARRVFDVNVSCRDVCSWTSLLTAYGRAALLHHARALFDA 179

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP +  ++W+AI++AY     F E + +F++M    ++PN + ++SVL AC  LGA+ QG
Sbjct: 180 MPHKTTIAWAAILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQG 239

Query: 183 LWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            WVH++    H  + K+ ++ATA+VDMY+KCG + +A  VF G++ +D  A+ AM+SG++
Sbjct: 240 RWVHAHLVAAHGAMAKDGMVATALVDMYAKCGSLETARQVFSGMAERDVFAYTAMVSGLS 299

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   +++ELF RM + G +P E TF+ VL+ C  A +V     +  +MSAV+G+E  +
Sbjct: 300 DHGRCVEAIELFGRMQEEGVRPNEVTFICVLSACGRAGLVGRAREILGSMSAVHGMEAGV 359

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY  +VD+L RAGMVEEA + +          D+ V GALL+AC   G  E G  V   
Sbjct: 360 EHYGSMVDVLGRAGMVEEALEVVRRMP---MRPDSYVLGALLNACVARGDTEGGEEVAAM 416

Query: 361 LAEMGITDFS-THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +AE+G+ D S   V   N+Y   G   E   VR+ + E  + K PGCS++EV+GV  EF+
Sbjct: 417 MAELGLDDRSGVQVQLSNLYAGRGKWEEVVGVRRGMEERKVVKVPGCSMVEVDGVAREFV 476

Query: 420 AGDNRH 425
           AGD  H
Sbjct: 477 AGDRSH 482



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 110/263 (41%), Gaps = 36/263 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++  Y+ A     +V  + +ML     PN      ++ AC  LG LE  G +VHAH+V  
Sbjct: 191 ILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQ-GRWVHAHLVAA 249

Query: 61  --GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
                +D  V ++L++ Y+    + TAR +F    +RDV  +T MV G    G    A E
Sbjct: 250 HGAMAKDGMVATALVDMYAKCGSLETARQVFSGMAERDVFAYTAMVSGLSDHGRCVEAIE 309

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF +                               MQE G++PNE   + VL+AC   G 
Sbjct: 310 LFGR-------------------------------MQEEGVRPNEVTFICVLSACGRAGL 338

Query: 179 ITQGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           + +   +       H +E  V    ++VD+  + G V  AL V   +  + D+    A++
Sbjct: 339 VGRAREILGSMSAVHGMEAGVEHYGSMVDVLGRAGMVEEALEVVRRMPMRPDSYVLGALL 398

Query: 237 SGVAMNGDAKKSLELFDRMVKSG 259
           +     GD +   E+   M + G
Sbjct: 399 NACVARGDTEGGEEVAAMMAELG 421


>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
 gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 155/411 (37%), Positives = 236/411 (57%), Gaps = 6/411 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY      + S   +  M + G  P+ YT  PL+KAC  LG L+  G  +H  V+  
Sbjct: 78  MIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQ-LGKCMHKEVLVV 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF     +   ++E YS    M  A  +FD+   RDV+ W  M+ G+ K GD +    LF
Sbjct: 137 GFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLF 196

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +R+ VSW+ +++  ++     E L LF  M + G KP+E+ +V+VL  CA LG++ 
Sbjct: 197 RQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVD 256

Query: 181 QGLWVHSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            G W+HSYAK   L ++ V +  A+VD Y+K G   +A  VF+ +  K+  +WN +ISG+
Sbjct: 257 VGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGL 316

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A+NG+ +  +EL + M+  G +P + TFV VL+ C HA +   G  L  +M   + +EP+
Sbjct: 317 ALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPK 376

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C+VDLL R+G V EA   I    G  G  +A +WG+LLSACR +G +E+ +   +
Sbjct: 377 LEHYGCMVDLLGRSGCVREAYDLIRIMPG--GAPNAALWGSLLSACRTHGDVELAHLAVK 434

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVI 409
           +L ++   +   +VL  N+Y +E  WD  AN VR ++ E  +KK PG SVI
Sbjct: 435 ELIDLEPWNSGNYVLLSNMYAEEERWDKVAN-VRGMMREKNVKKTPGQSVI 484



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 131/321 (40%), Gaps = 39/321 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH ++ G  +   ++S  +     ++KM  A  +F ++ +  ++ +  M+ GY   G 
Sbjct: 28  IHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLNGP 87

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           FE +  LF  M  R                               G+ P+E  L  +L A
Sbjct: 88  FEESFRLFSSMKNR-------------------------------GIWPDEYTLAPLLKA 116

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+ LG +  G  +H        E    +   V+++YS CG +  A  VF+ +  +D   W
Sbjct: 117 CSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVW 176

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N MI G    GD    L LF +M K        ++  +++    ++   + L LF +M  
Sbjct: 177 NLMIHGFCKRGDVDMGLCLFRQMRKRSV----VSWNIMISCLAQSRRDSEALGLFHDMLD 232

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE--KMGGLGGGDANVWGALLSACRIYGK 350
            +G +P       V+ + AR G V +  K+I    K  GL      V  AL+      G 
Sbjct: 233 -WGFKPDEATVVTVLPICARLGSV-DVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGM 290

Query: 351 IEVGNRVWRKLAEMGITDFST 371
            E   RV+ ++    +  ++T
Sbjct: 291 FETARRVFDEMPRKNVISWNT 311



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 13/198 (6%)

Query: 180 TQGLWVHSYAKRYHLEK-NVILATAVVDMYSKCGHVHS---ALSVFEGISNKDAGAWNAM 235
           TQ   +H++  R+ L + N IL+  V    S CG ++    A  +F+   N     +NAM
Sbjct: 23  TQLREIHAHFLRHGLNQLNQILSHFV----SICGSLNKMAYANRIFKQTQNPTIILFNAM 78

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G ++NG  ++S  LF  M   G  P E T   +L  C+   +++ G  + + +  V G
Sbjct: 79  IKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEV-LVVG 137

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            E        V++L +  G++E+AEK  +E    +   D  VW  ++      G +++G 
Sbjct: 138 FEGFSAIRIGVIELYSSCGVMEDAEKVFDE----MYQRDVIVWNLMIHGFCKRGDVDMGL 193

Query: 356 RVWRKLAEMGITDFSTHV 373
            ++R++ +  +  ++  +
Sbjct: 194 CLFRQMRKRSVVSWNIMI 211


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 240/451 (53%), Gaps = 53/451 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G + + +    +  Y  M++    P++Y    ++KAC     L+  G  VH+ V+K 
Sbjct: 101 LIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKE-GREVHSQVLKL 159

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  +   L+E Y                               GK G FE+AR +F
Sbjct: 160 GLSSNRSIRIKLIELY-------------------------------GKCGAFEDARRVF 188

Query: 121 EKMPERNAVS------------------WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++MPER+ V+                  W+A++    R  +    L +FR MQ   + PN
Sbjct: 189 DEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPN 248

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E  +V VL+AC+ LGA+  G WV SY  ++ +E N  +  A+++MYS+CG +  A  VFE
Sbjct: 249 EVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFE 308

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +  K+   +N+MI G A++G + +++ELF  ++K G  P+  TFV VL  C+H  +   
Sbjct: 309 QMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAEL 368

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G  +F +M+  YG+EPQ+EHY C+VDLL R G +EEA  FI  +M  +   D  + GALL
Sbjct: 369 GFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFI--RMMKV-APDHVMLGALL 425

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402
           SAC+I+G +E+  RV + L      D  T++L  N Y  +G   EA +VR  + E G++K
Sbjct: 426 SACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEK 485

Query: 403 KPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           +PGCS IEVN  + EFL GD RH Q  +IY+
Sbjct: 486 EPGCSSIEVNNEIHEFLLGDLRHPQKEKIYK 516



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 150/338 (44%), Gaps = 58/338 (17%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           ++A +++    +DPFVV  LL   S ++ +G A  +F  + + +V  +T ++DG      
Sbjct: 51  IYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGL----- 105

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                +++ Y     + + + L+ QM    + P+   + SVL A
Sbjct: 106 ---------------------VLSCY-----YTDGIHLYYQMINSSLVPDSYAVTSVLKA 139

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA- 231
           C    A+ +G  VHS   +  L  N  +   ++++Y KCG    A  VF+ +  +D  A 
Sbjct: 140 CGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVAS 199

Query: 232 -----------------WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
                            W AMI G+  NG++ ++LE+F  M +    P E T V VL+ C
Sbjct: 200 TVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSAC 259

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
           +    ++ G  +   M   + +E  L H+    ++++ +R G ++EA++  E+    +  
Sbjct: 260 SELGALQLGRWVRSYMDK-HRIE--LNHFVGGALINMYSRCGDIDEAQRVFEQ----MKE 312

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
            +   + +++    ++GK      ++R L + G T  S
Sbjct: 313 KNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSS 350


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 262/459 (57%), Gaps = 45/459 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPN-NYTFPPLIKACVILGPLENF--GMFVHAH 56
           +I+G+   + P  S+  Y  ML  + +     ++ P ++KAC   G L  F  G  VH  
Sbjct: 78  LIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKAC---GKLLAFDEGRQVHGQ 134

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV------------ 104
           V+K     DPFV +S++  Y    ++  AR +FD+ P+RDVV+W +M+            
Sbjct: 135 VLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELA 194

Query: 105 -------------------DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                              DGYGK G  E A ++FE M +++ V+W+++++AY +     
Sbjct: 195 SELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPM 254

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE-KNVILATAV 204
           + L LFR+M  +G++P+   +VSVL+A A LG + +G W+H+Y     +E  +  + +A+
Sbjct: 255 KALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSAL 314

Query: 205 VDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +DMYSKCG++ +A  VF  IS+ ++ G WN+MISG+A++G A+++L++F  M +   +P 
Sbjct: 315 IDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPN 374

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           E TF+ +L+TC+H  +V +G   FE+M   Y + P+++HY C++DL  RAG +E+A   I
Sbjct: 375 EITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVI 434

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +         D   W A+LSA   +G IE+G     +  E+   D S++VL  NIY +AG
Sbjct: 435 QNMP---FEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAG 491

Query: 384 -WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            WD +  K+R ++ + G+KK  GCS + VBG V EFL G
Sbjct: 492 RWD-DVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXG 529



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 118/297 (39%), Gaps = 58/297 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K       F VS L+ F SL                             G  G 
Sbjct: 25  IHAQMIKTNLLNHQFTVSRLIAFCSLS----------------------------GVSGG 56

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVL 170
            + A  +F ++   N+  + A++  +S  S+  E L L+ +M       +  E  + SVL
Sbjct: 57  LDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVL 116

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC  L A  +G  VH    + HL  +  +  ++V MY   G +  A  VF+ + N+D  
Sbjct: 117 KACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVV 176

Query: 231 AWNAMISGVAMNGDAKKSLELFDRM---------------------------VKSGTQPT 263
           +WN+MI+G    G+ + + ELFD M                            ++ +   
Sbjct: 177 SWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKD 236

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
             T+ ++++     +     L+LF  M ++ G+ P       V+  +A  G VEE +
Sbjct: 237 VVTWTSMISAYVQNRCPMKALDLFREMLSL-GLRPDGPAIVSVLSAIADLGFVEEGK 292


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 152/432 (35%), Positives = 231/432 (53%), Gaps = 35/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY+Q   P+ ++  +  ML+ G +P   T    + AC  LG LE  G FVH  V + 
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLER-GKFVHKFVDQL 378

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G D  V++SL+  YS                               K    + A ++F
Sbjct: 379 NLGSDISVMNSLISMYS-------------------------------KCKRVDIASDIF 407

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  R  VSW+A++  Y++     E L+ F +M+ +GMKP+   +VSV+ A A L    
Sbjct: 408 NNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTR 467

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
              W+H    R  L+KN+ + TA+VDMYSKCG +H A  +F+ IS++    WNAMI G  
Sbjct: 468 HAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYG 527

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  + +L+LFD+M K   +P + T+++V++ C+H+ +V +GL  F++M   YG+EP +
Sbjct: 528 THGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSM 587

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY  +VDLL RAG ++EA  FIE      G     V+GA   AC+I+  IEVG +  +K
Sbjct: 588 DHYGAMVDLLGRAGRIKEAWDFIENMPISPG---ITVYGAXXGACKIHKNIEVGEKAAKK 644

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   +   HVL  NIY       +  +VRK + + G+KK PGCSV+E+   V  F +
Sbjct: 645 LFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYS 704

Query: 421 GDNRHAQAGEIY 432
           G   H Q+  IY
Sbjct: 705 GSTTHPQSKRIY 716



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 110/179 (61%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           +V   T +V+ Y K    ++A ++F++MPER+ VSW+ I+A +S+    K+ L L  +MQ
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + G +P+   LV+VL A A +G +  G  +H YA R    K V ++TA+ DMYSKCG V 
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           +A  +F+G+  K   +WN+M+ G   NG+ +K++ +F++M++ G  PT  T +  L  C
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHAC 359



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 45/330 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ Q  F K ++   L M D G  P++ T   ++ A   +G L   G  +H + ++ 
Sbjct: 219 IIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLM-VGKSIHGYAIRA 277

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF +   + ++L + YS    + TAR +FD    + VV+W +M+DGY + G+ E A  +F
Sbjct: 278 GFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVF 337

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           EKM E                                G+ P    ++  L ACA LG + 
Sbjct: 338 EKMLEE-------------------------------GIDPTGVTIMEALHACADLGDLE 366

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G +VH +  + +L  ++ +  +++ MYSKC  V  A  +F  ++ +   +WNAMI G A
Sbjct: 367 RGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYA 426

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAV------LTTCTHAKMVRDGLNLFENMSAVY 294
            NG   ++L  F  M   G +P   T V+V      L+   HAK +  GL +   +    
Sbjct: 427 QNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH-GLIIRSCLDKNI 485

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            V   L      VD+ ++ G +  A K  +
Sbjct: 486 FVTTAL------VDMYSKCGAIHMARKLFD 509



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 115/277 (41%), Gaps = 27/277 (9%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  + K G    A  +FE + ++    +  ++  Y++ S  +  L+   +M+   +K
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P       +L  C     + +G  +H          NV   T VV+MY+KC  +  A  +
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT----- 275
           F+ +  +D  +WN +I+G + NG AKK+LEL  RM   G +P   T V VL         
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 276 ------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
                 H   +R G     N+S              + D+ ++ G VE A    +    G
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTA------------LADMYSKCGSVETARLIFD----G 308

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +       W +++      G+ E    V+ K+ E GI
Sbjct: 309 MDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGI 345



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 36/76 (47%)

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +  T +V ++SK G ++ A  VFE I +K    ++ M+ G A N   + +L    RM   
Sbjct: 82  LFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYD 141

Query: 259 GTQPTETTFVAVLTTC 274
             +P    F  +L  C
Sbjct: 142 DVKPVVYNFTYLLKVC 157


>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 663

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 159/410 (38%), Positives = 239/410 (58%), Gaps = 6/410 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA---CVILGPLENFGMFVHAHV 57
           +IRGY +++ P  SV  +  M     +P+ +TF  L+K      I  PL      +H  V
Sbjct: 253 LIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAV 312

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +K GF    FV+++L+  Y+       A  +F++    DVV+W+ +V  + + G+ E AR
Sbjct: 313 LKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELAR 372

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ++F +MPER+ VSW+ +++ Y++    +E L LFR+M++VG++P+E  +VSV++AC  LG
Sbjct: 373 QVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLG 432

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH Y         V L  A++DMY+KCG +  A  VF  +  K    WN+MIS
Sbjct: 433 DLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMIS 492

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A +G+A+ +  +F  M+ SG +P   TF+A+LT  TH   V DG  LFE+M   YGVE
Sbjct: 493 ACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVE 552

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             +EHY C+VD+L RAG +EEA K I      +   D  VWGALL+ACRIYG +E+G RV
Sbjct: 553 AGVEHYGCMVDMLGRAGRLEEAYKLITSM--SMPCNDV-VWGALLAACRIYGDVEMGERV 609

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
            +KL E+   +   ++L  +IY  AG   EA ++R+ +   G KK  GCS
Sbjct: 610 LKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCS 659



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 153/380 (40%), Gaps = 40/380 (10%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK-- 81
           M   P + +   + +AC+ +  L+     +HA   +        V++ +  F ++     
Sbjct: 176 MHMLPTSQSLASMAEACLTMQALK----LIHALAFRANLHHHALVLAKIFRFAAVSPNGC 231

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV-----SWSAIMA 136
           +  A  LF +    +   + T++ GY K      + +LF +M  RN V     +++ ++ 
Sbjct: 232 LHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQM-RRNCVDPDGFTFTFLLK 290

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR----- 191
             SR+   +  L L     E+       G V  L  C HL        +H YA R     
Sbjct: 291 GRSRM---RIDLPLIVASDEI------HGAVLKLGFCFHL--FVMNALIHLYAARGVPAA 339

Query: 192 ------YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
                   +  +V+  + +V  + + G +  A  VF  +  +D  +W  M+SG A    +
Sbjct: 340 AHQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRS 399

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
           +++LELF  M   G +P E   V+V++ CT    +  G  +   +    G    +     
Sbjct: 400 REALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDE-NGFGWMVSLCNA 458

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++D+ A+ G ++ A +        +       W +++SAC  +G  E   RV+  +   G
Sbjct: 459 LIDMYAKCGCMDLAWQVFNN----MERKSLITWNSMISACANHGNAEDAFRVFTLMLYSG 514

Query: 366 I-TDFSTHVLSYNIYKEAGW 384
           I  D  T +     Y   GW
Sbjct: 515 IRPDGVTFLALLTAYTHKGW 534



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 138/328 (42%), Gaps = 52/328 (15%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE------- 163
           G+ E  R++   M     VSW+ +++ Y++    +E L LFR++++V ++P +       
Sbjct: 103 GELELPRQVM--MKYLGDVSWTVMVSMYAQAKRSREPLELFREIRDVRVRPTDVVTMGVD 160

Query: 164 ----------------------SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
                                   L S+  AC  + A+     +H+ A R +L  + ++ 
Sbjct: 161 YDKYKTLKSYISNKVMHMLPTSQSLASMAEACLTMQALK---LIHALAFRANLHHHALVL 217

Query: 202 TAVVDM--YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
             +      S  G +H A  +F  I   +   +N +I G + +    +S++LF++M ++ 
Sbjct: 218 AKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNC 277

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH------YACVVDLLARA 313
             P   TF  +L   +    +R  L L      ++G   +L           ++ L A  
Sbjct: 278 VDPDGFTFTFLLKGRSR---MRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAAR 334

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G+   A +   E +    G D   W  L+ A    G++E+  +V+ ++ E  +  ++  V
Sbjct: 335 GVPAAAHQVFNEMV----GADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMV 390

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMK 401
              + Y +A    EA ++ + + + G++
Sbjct: 391 ---SGYAQAKRSREALELFREMRDVGVR 415


>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 527

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 148/413 (35%), Positives = 241/413 (58%), Gaps = 4/413 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y++      +V    +M      P+  T    + AC   G L + G  +HA++   
Sbjct: 118 MLRCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDL-SLGRKIHAYMDGV 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                P V ++LL+ Y     +  A  LF+K P R+VV+WTT+V GY   G  + AR LF
Sbjct: 177 TGFSLP-VANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLF 235

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +  E++ + W+A++ AY +   F E LSLFR MQ   ++P+   +V++LT CA+LGA+ 
Sbjct: 236 HQCTEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALD 295

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG  +H +A+  +++ + +L TA++DMY+KCGHV  ++ VFE +  +D  AW A+I G+A
Sbjct: 296 QGQLIHQFAEGRNMKLDAVLGTALIDMYAKCGHVEKSVEVFERMEGRDTKAWTAIICGLA 355

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A ++LELF+ M +S  +P   TF+ VL+ C H  +V +G   F  M  VY + P++
Sbjct: 356 TNGQAGRALELFEDMERSEAKPDSVTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRV 415

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+V+LL RAG ++EAEK I  K   +      ++GAL++AC+  G +++  R+ ++
Sbjct: 416 EHYSCLVNLLGRAGQLDEAEKLI--KSIPINKDAMPLFGALITACKAQGNVKMSERLTKR 473

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           + + G      ++L  N+Y  A    +  +VR  ++   +KK  GCS+IEV G
Sbjct: 474 IGKQGYQIPDVNLLMSNVYATASRWEDVVRVRSKMAHPSVKKNAGCSLIEVKG 526



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/373 (22%), Positives = 159/373 (42%), Gaps = 87/373 (23%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVVKFGFGEDPFVVSSLLEF 75
           Y D+ + G   +++T+P +++A   +G L+    G   HA  +K GF  D +  SSL++ 
Sbjct: 34  YYDLRERGLVADSFTYPFVLRA---IGALQISVEGRKAHAATLKTGFRWDAYTASSLMDM 90

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y++                               +G  E AR++F++MP+R  V W+ ++
Sbjct: 91  YTM-------------------------------LGRLEAARKVFDEMPQRAVVVWNMML 119

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             Y R     E ++L  +M+   + P+   L++ LTAC+  G ++ G  +H+Y       
Sbjct: 120 RCYVRCGRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGV-TG 178

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK-------- 247
            ++ +A A++DMY K G +  A+++FE + +++  +W  ++SG A  G   K        
Sbjct: 179 FSLPVANALLDMYVKNGCLEEAVNLFEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQC 238

Query: 248 -----------------------SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
                                  +L LF  M     +P   T V +LT C +   +  G 
Sbjct: 239 TEKDLIMWTAMINAYVQHGCFIEALSLFRDMQMHQIEPDRFTVVTLLTCCANLGALDQGQ 298

Query: 285 NLFE-------NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337
            + +        + AV G          ++D+ A+ G VE++ +  E     + G D   
Sbjct: 299 LIHQFAEGRNMKLDAVLGTA--------LIDMYAKCGHVEKSVEVFER----MEGRDTKA 346

Query: 338 WGALLSACRIYGK 350
           W A++      G+
Sbjct: 347 WTAIICGLATNGQ 359



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 114/266 (42%), Gaps = 12/266 (4%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP R     + ++   +R S   +V++++  ++E G+  +      VL A   L    +G
Sbjct: 9   MPLREC---NLLIRTLARRSSHADVMAVYYDLRERGLVADSFTYPFVLRAIGALQISVEG 65

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
              H+   +     +   A++++DMY+  G + +A  VF+ +  +    WN M+      
Sbjct: 66  RKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVFDEMPQRAVVVWNMMLRCYVRC 125

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G   +++ L + M +    P   T +  LT C+ A  +  G  +   M  V G    + +
Sbjct: 126 GRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVAN 185

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
              ++D+  + G +EEA    E+    +   +   W  L+S     G+++    ++ +  
Sbjct: 186 --ALLDMYVKNGCLEEAVNLFEK----MPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCT 239

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEA 388
           E  +  ++  +   N Y + G  +EA
Sbjct: 240 EKDLIMWTAMI---NAYVQHGCFIEA 262


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 244/477 (51%), Gaps = 41/477 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+   F +  +  +  M     +P++YTFP ++KAC   G +   G  +H    K 
Sbjct: 112 MIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIV-IGKKIHGSATKV 170

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
           G     FV + L+  Y     +  AR + D+   RDVV+W ++V GY +   F++A    
Sbjct: 171 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVC 230

Query: 117 ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
                                            +++F KM +++ VSW+ ++  Y + + 
Sbjct: 231 REMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAM 290

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             E + L+  M+  G +P+   + SVL AC    A++ G  +H Y +R  L  N++L  A
Sbjct: 291 PVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 350

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A  VFE + ++D  +W AMIS    +G    ++ LF +M  SG  P 
Sbjct: 351 LIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPD 410

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV  L  C+HA ++ +G + F+ M+  Y + P+LEH AC+VDLL RAG V+EA KFI
Sbjct: 411 SIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFI 470

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +E        +  VWGALL ACR++   ++G     KL ++       +VL  NIY +AG
Sbjct: 471 QEMP---MEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 527

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
              E   +R ++   G+KK PG S +EVN ++  FL GD  H Q+ EIYR +   +K
Sbjct: 528 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVK 584



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 79/153 (51%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++  Y  + D   AR++F+++PERN +  + ++ +Y     ++E + +F  M    +KP+
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
                 VL AC+  G I  G  +H  A +  L   + +   +V MY KCG +  A  V +
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +S +D  +WN++++G A N     +LE+   M
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREM 233



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 76/183 (41%), Gaps = 5/183 (2%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VHS      L  N  L   ++  Y+    V +A  VF+ I  ++    N MI     NG 
Sbjct: 62  VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            ++ +++F  M     +P   TF  VL  C+ +  +  G  +  + + V G+   L    
Sbjct: 122 YREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKV-GLSSTLFVGN 180

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            +V +  + G + EA   ++E    +   D   W +L++      + +    V R++  +
Sbjct: 181 GLVSMYGKCGFLSEARLVLDE----MSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESV 236

Query: 365 GIT 367
            I+
Sbjct: 237 KIS 239


>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61800-like [Glycine max]
          Length = 577

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 228/412 (55%), Gaps = 7/412 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I   + +  P L +F  L  L +   P+ +TFP ++KA   L  L +    +H+  +KFG
Sbjct: 83  IHTLLLSPLPALHLFSTLRRLSL--PPDFHTFPFVLKASAQLHSL-SLAQSLHSQALKFG 139

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
              D F +++L+  YS+ H++  A  LF + P  DVV++  ++ G  K      ARELF+
Sbjct: 140 LLPDLFSLNTLIGVYSIHHRVNDAHKLFYECPHGDVVSYNALIHGLVKTRQISRARELFD 199

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MP R+ +SW  ++A YS +    + + LF +M  + +KP+   LVSVL+ACA LG + Q
Sbjct: 200 EMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALVSVLSACAQLGELEQ 259

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  VH Y KR  +  +  LAT +VD+Y+KCG V +A  VFE    K    WNAM+ G A+
Sbjct: 260 GSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAI 319

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G+    LE F RMV  G +P   T + VL  C+HA +V +   +F+ M  VYGV+ + +
Sbjct: 320 HGEGSMVLEYFSRMVSEGVKPDGVTLLGVLVGCSHAGLVLEARRIFDEMENVYGVKREGK 379

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+ D+LARAG++EE  + ++       GGD   WG LL  CRI+G +EV  +  +++
Sbjct: 380 HYGCMADMLARAGLIEEGVEMVKAMP---SGGDVFAWGGLLGGCRIHGNVEVAKKAAQQV 436

Query: 362 AEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVN 412
            E+   D   + +  NIY     WD      R L +    KK  G S+I +N
Sbjct: 437 MEIKPEDGGVYSVMANIYAHTEQWDDLVKVRRSLSANKRAKKITGRSLIRLN 488



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 109/255 (42%), Gaps = 37/255 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY        ++  + +M+ +  +P+N     ++ AC  LG LE  G  VH ++ + 
Sbjct: 212 MIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALVSVLSACAQLGELEQ-GSIVHDYIKRN 270

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D ++ + L++ Y+    + TAR +F+   ++ V TW  M+ G+   G+        
Sbjct: 271 RIRVDSYLATGLVDLYAKCGCVETARDVFESCMEKYVFTWNAMLVGFAIHGEGS------ 324

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                     VL  F +M   G+KP+   L+ VL  C+H G + 
Sbjct: 325 -------------------------MVLEYFSRMVSEGVKPDGVTLLGVLVGCSHAGLVL 359

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISG 238
           +   +    +  Y +++       + DM ++ G +   + + + + S  D  AW  ++ G
Sbjct: 360 EARRIFDEMENVYGVKREGKHYGCMADMLARAGLIEEGVEMVKAMPSGGDVFAWGGLLGG 419

Query: 239 VAMNGD---AKKSLE 250
             ++G+   AKK+ +
Sbjct: 420 CRIHGNVEVAKKAAQ 434



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 5/203 (2%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  LF  +P  +  S++ ++  ++ +      L LF  ++ + + P+      VL A A 
Sbjct: 62  ALSLFHSIPNPSTFSFNTLIRIHTLLLSPLPALHLFSTLRRLSLPPDFHTFPFVLKASAQ 121

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L +++    +HS A ++ L  ++     ++ +YS    V+ A  +F    + D  ++NA+
Sbjct: 122 LHSLSLAQSLHSQALKFGLLPDLFSLNTLIGVYSIHHRVNDAHKLFYECPHGDVVSYNAL 181

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G+       ++ ELFD M        E ++  ++   +H K+    + LF  M  +  
Sbjct: 182 IHGLVKTRQISRARELFDEMPVR----DEISWGTMIAGYSHLKLCNQAIELFNEMMRL-E 236

Query: 296 VEPQLEHYACVVDLLARAGMVEE 318
           V+P       V+   A+ G +E+
Sbjct: 237 VKPDNIALVSVLSACAQLGELEQ 259


>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
          Length = 530

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 236/453 (52%), Gaps = 14/453 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL---ENFGMFVHAHV 57
           M R ++ +     ++  + DM+  G  P+N      + AC   G      N G  +HA V
Sbjct: 82  MARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALV 141

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           V  G   D FV + L+  Y    ++  +R +FD  P R  +TW  M+  Y + G  + A 
Sbjct: 142 VTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY 201

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACA 174
           E+F  MP R+ VSW+ ++A Y      +E L LFRQM       + PN   + ++L ACA
Sbjct: 202 EMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 261

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE-GISNKDAGAWN 233
             G +  G+WVH+Y +R  +  +  L   ++DMY KCG + +AL VFE     KD  +W 
Sbjct: 262 GAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWT 321

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            +I G+AM+G    +L +FD M  +G  P + T V VL  C H  +V +GL  F +M A 
Sbjct: 322 TVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAK 381

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN--VWGALLSACRIYGKI 351
           + + P++EHY C++DLL R G ++EA   I          D N  +WGA LSAC+++G +
Sbjct: 382 FRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTM-----PMDPNTVIWGAFLSACKVHGNM 436

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
           E+G     +L  +   D    V+  ++Y +A   +   + R+ ++   +KK PGCS IE+
Sbjct: 437 ELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIEL 496

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
            G V EF+AG ++H Q  EI  V+      +N+
Sbjct: 497 KGEVHEFVAGGSQHPQYAEICSVLQDVEAQTNV 529



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y  +G  ++AR LF++MPE+  V  +A+  A+       + +++F  M   G+ 
Sbjct: 49  TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108

Query: 161 PNESGLVSVLTACAHLGAIT----QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
           P+   +   L AC   G+ T     G  +H+      +  +V ++T ++ +Y + G +  
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           +  VF+ + ++    WNAM+   A +G    + E+F  M +        ++  VL     
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDV----VSWNTVLAGYCV 224

Query: 277 AKMVRDGLNLFENM--SAVYGVEPQLEHYACVVDLLARAGMVE 317
           A   R+ L LF  M   +   V P +   + ++   A AG +E
Sbjct: 225 AGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLE 267


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 245/443 (55%), Gaps = 35/443 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G +++N  +     ++ M +    PN  T   LI  C   G L+  G  +HA++++ 
Sbjct: 269 MIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQ-LGKQLHAYILRN 327

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF      VS  L                           T +VD YGK  D  NAR LF
Sbjct: 328 GFS-----VSLALA--------------------------TALVDMYGKCSDIRNARALF 356

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +    R+ + W+A+++AY++ +   +  +LF QM+  G++P +  +VS+L+ CA  GA+ 
Sbjct: 357 DSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALD 416

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHSY  +  +E + IL TA+VDMY+KCG +++A  +F    ++D   WNA+I+G A
Sbjct: 417 LGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFA 476

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  +++L++F  M + G +P + TF+ +L  C+HA +V +G  LFE M   +G+ PQ+
Sbjct: 477 MHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQI 536

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EA + I+         +  VWGAL++ACR++   ++G     +
Sbjct: 537 EHYGCMVDLLGRAGLLDEAHEMIKSMP---IKPNTIVWGALVAACRLHKNPQLGELAATQ 593

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   +   +VL  NIY  A    +A  VRK +   GMKK+PG SVIEVNG V EFL 
Sbjct: 594 LLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLM 653

Query: 421 GDNRHAQAGEIYRVIHSFLKMSN 443
           GD  H Q   I  ++    +  N
Sbjct: 654 GDQSHPQIRRINEMLAEMRRKLN 676



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 139/270 (51%), Gaps = 5/270 (1%)

Query: 97  VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
           V T T ++D Y K G    AR+LF  + ++  VSW+A++A   R +  +E   LF +MQE
Sbjct: 232 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE 291

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
             + PNE  ++S++  C   GA+  G  +H+Y  R     ++ LATA+VDMY KC  + +
Sbjct: 292 ENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRN 351

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           A ++F+   N+D   W AM+S  A      ++  LFD+M  SG +PT+ T V++L+ C  
Sbjct: 352 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAV 411

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
           A  +  G  +   +     VE        +VD+ A+ G +  A +   E +      D  
Sbjct: 412 AGALDLGKWVHSYIDKER-VEVDCILNTALVDMYAKCGDINAAGRLFIEAI----SRDIC 466

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +W A+++   ++G  E    ++ ++   G+
Sbjct: 467 MWNAIITGFAMHGYGEEALDIFAEMERQGV 496



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           +  K  DRDV     ++  YG+    E AR +F+KM ER+ VSWS ++ + SR  +F   
Sbjct: 120 VLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMA 179

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVV 205
           L L R+M  + ++P+E  +VS++   A    +  G  +H+Y  R    ++  V   TA++
Sbjct: 180 LELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALL 239

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY+KCGH+  A  +F G++ K   +W AMI+G   +   ++  +LF RM +    P E 
Sbjct: 240 DMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEI 299

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T ++++  C     ++ G  L   +    G    L     +VD+  +   +  A    + 
Sbjct: 300 TMLSLIVECGFTGALQLGKQLHAYILR-NGFSVSLALATALVDMYGKCSDIRNARALFDS 358

Query: 326 KMGGLGGGDANVWGALLSA 344
                   D  +W A+LSA
Sbjct: 359 TQ----NRDVMIWTAMLSA 373



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 15/222 (6%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           SVL AC  +     G  +H +  +  L+++V +  A++ MY +C  V  A  VF+ +  +
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           D  +W+ MI  ++ N +   +LEL   M     +P+E   V+++        +R G    
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG---- 214

Query: 288 ENMSAVYGVEPQLEHY-----ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           + M A        EH        ++D+ A+ G +  A +       GL       W A++
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLF----NGLTQKTVVSWTAMI 270

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
           + C    ++E G +++ ++ E  I  F   +   ++  E G+
Sbjct: 271 AGCIRSNRLEEGTKLFIRMQEENI--FPNEITMLSLIVECGF 310


>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
          Length = 722

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/410 (38%), Positives = 239/410 (58%), Gaps = 6/410 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA---CVILGPLENFGMFVHAHV 57
           +IRGY +++ P  SV  +  M     +P+ +TF  L+K      I  PL      +H  V
Sbjct: 312 LIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAV 371

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +K GF    FV+++L+  Y+       A  +F++    DVV+W+ +V  + + G+ E AR
Sbjct: 372 LKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELAR 431

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ++F++MPER+ VSW+ +++ Y++    +E L LFR+M++VG++P+E  +V V++AC  LG
Sbjct: 432 QVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLG 491

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH Y         V L  A++DMY+KCG +  A  VF  +  K    WN+MIS
Sbjct: 492 DLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMIS 551

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A +G+A+ +  +F  M+ SG +P   TF+A+LT  TH   V DG  LFE+M   YGVE
Sbjct: 552 ACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVE 611

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             +EHY C+VD+L RAG +EEA K I      +   D  VWGALL+ACRIYG +E+G RV
Sbjct: 612 AGVEHYGCMVDMLGRAGRLEEAYKLITSM--SMPCNDV-VWGALLAACRIYGDVEMGERV 668

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
            +KL E+   +   ++L  +IY  AG   EA ++R+ +   G KK  GCS
Sbjct: 669 LKKLIELKPDEGGYYILLRDIYVAAGRRAEAIELRRAMDVNGAKKTLGCS 718



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 81/424 (19%), Positives = 170/424 (40%), Gaps = 52/424 (12%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK-- 81
           M   P + +   + +AC+ +  L+     +HA   +        V++ +  F ++     
Sbjct: 81  MHMLPTSQSLASMAEACLAMQALK----LIHARAFRANLHNHALVLAKIFRFAAVSPNGC 136

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV-----SWSAIMA 136
           +  A  LF +    +   + T++ GY K      + +LF +M  RN V     +++ ++ 
Sbjct: 137 LHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQM-RRNCVDPDGFTFTFLLK 195

Query: 137 AYSRIS-------------------DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
             SR+                    D  + L  +   + + M P    L S+  AC  + 
Sbjct: 196 GRSRMRIDLPLIVASDEIHGAGVDYDKYKTLKSYISNKVMHMLPTSQSLASMAEACLAMQ 255

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDM--YSKCGHVHSALSVFEGISNKDAGAWNAM 235
           A+     +H+ A R +L  + ++   +      S  G +H A  +F  I   +   +N +
Sbjct: 256 ALK---LIHARAFRANLHNHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTL 312

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G + +    +S++LF++M ++   P   TF  +L   +    +R  L L      ++G
Sbjct: 313 IRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSR---MRIDLPLIVASDEIHG 369

Query: 296 VEPQLEH------YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
              +L           ++ L A  G+   A +   E +    G D   W  L+ A    G
Sbjct: 370 AVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMV----GADVVSWSGLVVAHVRAG 425

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
           ++E+  +V+ ++ E  +  ++  V     Y +A    EA ++ + + + G++      VI
Sbjct: 426 ELELARQVFDEMPERDVVSWTVMVSG---YAQAKRSREALELFREMRDVGVRPDEVAMVI 482

Query: 410 EVNG 413
            ++ 
Sbjct: 483 VISA 486


>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 798

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/427 (35%), Positives = 235/427 (55%), Gaps = 5/427 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  PN   F  ++ AC  L  L   G  +HA  +K G   + FV SSL++ Y 
Sbjct: 369 YSQMLADGCRPNISCFSSVLSACATLEDLRG-GARIHARSLKMGSSTNVFVSSSLIDMYC 427

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              K   A+ +FD  P++++V W ++  GY   G    A  LF+KMP RN  SW+ I++ 
Sbjct: 428 KCKKCRDAQTIFDTLPEKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISG 487

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y++   F + L  F  M   G  P E    SVL ACA+L ++  G   H+   +  +E++
Sbjct: 488 YAQNRQFVDALRSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEES 547

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + + TA+ DMY+K G + S+  +F  +  ++   W AMI G+A NG A++S+ L + M+ 
Sbjct: 548 IFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMA 607

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G  P E TF+A+L  C+H  +V   ++ FE M A +G+ P+ +HY C+VD+LARAG + 
Sbjct: 608 TGMTPNEHTFLALLFACSHGGLVEQAIHYFEKMQA-WGISPKEKHYTCMVDVLARAGRLI 666

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EAE  +   M      +AN W ALLSAC  Y   E+G R  ++L E+G  + + +VL  N
Sbjct: 667 EAEALL---MKTPSKSEANSWAALLSACNTYKNEEIGERAAKRLHELGKDNTAGYVLLSN 723

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +Y   G   +A ++R L+  T +KK  GCS ++V G    F + + +H  + EI  ++  
Sbjct: 724 MYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEINEILDL 783

Query: 438 FLKMSNL 444
            L  S+L
Sbjct: 784 LLWESSL 790



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/453 (26%), Positives = 203/453 (44%), Gaps = 64/453 (14%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I G+++      ++  +  M+  G  PN  TF  +IKACV  G      M +    +K  
Sbjct: 220 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEF-GLAMSIVGSAIKSN 278

Query: 62  FGEDPF-VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           F E    V +SL+  Y  +     AR +FD+   +DVV+WT ++D Y + GD + AR + 
Sbjct: 279 FFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVL 338

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPERN VSW  ++A + +  +  E + L+ QM   G +PN S   SVL+ACA L  + 
Sbjct: 339 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLR 398

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H+ + +     NV ++++++DMY KC     A ++F+ +  K+   WN++ SG +
Sbjct: 399 GGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLPEKNIVCWNSLASGYS 458

Query: 241 MNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFVA 269
            NG   +++ LF +                               M+ SG  P E TF +
Sbjct: 459 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNAMLASGQVPGEITFSS 518

Query: 270 VLTTC-----------THAKMVRDGL--NLF--ENMSAVYGVEPQLEH------------ 302
           VL  C            HAK ++ G+  ++F    +S +Y     L+             
Sbjct: 519 VLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 578

Query: 303 ---YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
              +  ++  LA  G  EE+   +E+ M      + + + ALL AC   G +E     + 
Sbjct: 579 DVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFE 638

Query: 360 KLAEMGITDFSTH-VLSYNIYKEAGWDMEANKV 391
           K+   GI+    H     ++   AG  +EA  +
Sbjct: 639 KMQAWGISPKEKHYTCMVDVLARAGRLIEAEAL 671



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 167/394 (42%), Gaps = 71/394 (18%)

Query: 49  FGMFVHAHVVKFGFGEDPFVVSSLLEFYS----------------------------LVH 80
             + +HAH V+ G   D  V S LL  Y+                            +VH
Sbjct: 100 LALSLHAHAVRSGVAADTSVASHLLTTYAAFARAAECDRAFGDCVAAGAASPFTYDFMVH 159

Query: 81  K------MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
           +      + +AR LFD  P+R+VV++TTMVD   K G    A EL+E+ P  +   ++A 
Sbjct: 160 EHVKAGDIASARGLFDGMPERNVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTAT 219

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG-----------AITQGL 183
           ++ + R       L +FR+M   G++PN    V ++ AC   G           AI    
Sbjct: 220 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAGEFGLAMSIVGSAIKSNF 279

Query: 184 WVHSY------------------AKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFE 222
           +  S                   A++   E   K+V+  TA++D+YS+ G +  A  V +
Sbjct: 280 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 339

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +  ++  +W  +I+     G+A ++++L+ +M+  G +P  + F +VL+ C   + +R 
Sbjct: 340 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACATLEDLRG 399

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G  +    S   G    +   + ++D+  +     +A+   +     L   +   W +L 
Sbjct: 400 GARIHAR-SLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDT----LPEKNIVCWNSLA 454

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           S     GK+     +++K+    +  ++T +  Y
Sbjct: 455 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGY 488


>gi|147825156|emb|CAN75501.1| hypothetical protein VITISV_034156 [Vitis vinifera]
          Length = 532

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 153/443 (34%), Positives = 250/443 (56%), Gaps = 9/443 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG+ +   P  SV  ++ ML  G  P++ T+P + KA   L  L    + VH  + K 
Sbjct: 76  IIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVAKAVARLSELR-LALAVHCRIAKE 134

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ +SL+  Y     +G+AR +FD+   R+ V+W  M+DGY K GD ++A ++F
Sbjct: 135 GLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSVSWNAMLDGYAKCGDLDSAHQVF 194

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP+R+ VSWS+++    +  ++   L++F +M+ VG K N   +VSVL ACAHLGA+ 
Sbjct: 195 XSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVGPKANXVTMVSVLCACAHLGALE 254

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISG 238
            G  +H Y     +   ++L T+++DMY+KCG +  A++VF G+     D   WN +I G
Sbjct: 255 XGRXMHQYMVDNTMRFTLVLRTSLMDMYAKCGAIEEAIAVFRGVPMDQTDVLMWNTIIGG 314

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G   +SLELF  M   G  P E T++ + + C H  +V +  + F+++    G+ P
Sbjct: 315 LATHGLVXESLELFKEMQVLGIVPDEITYLCLFSACAHGGLVHEAWHFFKSLGK-QGMVP 373

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           + EHYAC+VD+L+RAG + EA  FI +         A++ GALL+ C  + + ++  RV 
Sbjct: 374 KSEHYACMVDVLSRAGQLAEAYDFIAQMP---MEPTASMLGALLNGCMNHRRFDLAERVG 430

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           RKL E+       ++   N+Y     WD  A  +R+ +   G+KK PG S +EV G +  
Sbjct: 431 RKLIELEPDHDGRYIGLSNVYAGVKLWD-NARMMREAMERRGVKKSPGFSFVEVLGTLHR 489

Query: 418 FLAGDNRHAQAGEIYRVIHSFLK 440
           F+A D  H    +IY ++++ ++
Sbjct: 490 FIAHDKTHNDLEKIYMMLNTIVR 512



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 137/325 (42%), Gaps = 35/325 (10%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD +++  +F ++P     +W++I+  +S+  +    +S+F +M   G+ P+      V 
Sbjct: 53  GDIDHSYRIFLQIPSPTISNWNSIIRGFSKGKNPNPSVSVFVKMLRFGVCPDHLTYPFVA 112

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            A A L  +   L VH    +  L  +  +A +++ MY  CG + SA  VF+ +  +++ 
Sbjct: 113 KAVARLSELRLALAVHCRIAKEGLWFDRFIANSLIHMYGSCGDIGSARKVFDEMLIRNSV 172

Query: 231 AWNAMISGVAMNGDAKK-------------------------------SLELFDRMVKSG 259
           +WNAM+ G A  GD                                  +L +F+RM   G
Sbjct: 173 SWNAMLDGYAKCGDLDSAHQVFXSMPDRDVVSWSSMIDGCVKGGEYGVALAIFERMRVVG 232

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +    T V+VL  C H   +  G  + + M     +   L     ++D+ A+ G +EEA
Sbjct: 233 PKANXVTMVSVLCACAHLGALEXGRXMHQYM-VDNTMRFTLVLRTSLMDMYAKCGAIEEA 291

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNI 378
                 +   +   D  +W  ++     +G +     +++++  +GI  D  T++  ++ 
Sbjct: 292 IAVF--RGVPMDQTDVLMWNTIIGGLATHGLVXESLELFKEMQVLGIVPDEITYLCLFSA 349

Query: 379 YKEAGWDMEANKVRKLISETGMKKK 403
               G   EA    K + + GM  K
Sbjct: 350 CAHGGLVHEAWHFFKSLGKQGMVPK 374


>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
          Length = 523

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 243/441 (55%), Gaps = 43/441 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG----FEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           +IRG      P+ +V  Y  ML  G      P+  TFP +++AC  +G  +  G+ VHAH
Sbjct: 49  LIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDT-GVQVHAH 107

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMG-------------------------------TA 85
           VVK G   D FV ++L+  ++    +G                                A
Sbjct: 108 VVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 167

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P +D+V+W  M+  Y K GD   ARELF+++PER+ VSW+ +++ Y R     
Sbjct: 168 RDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHL 227

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILAT 202
             L LF QMQ +G KP+   ++S+L+ACA  G +  G  +HS        +N   V+L  
Sbjct: 228 HALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGN 286

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++DMY+KCG + SA  VF  + +KD   WN+++ G+A++G   +S+++F++M+K   +P
Sbjct: 287 ALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E TFVAVL  C+H  MV  G   F  M   Y VEP ++HY C+VD+L RAG+++EA +F
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEF 406

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I+         ++ +W  LLSACR++G+IE+     R+L +    +   +VL  NIY   
Sbjct: 407 IDTMK---CEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASV 463

Query: 383 GWDMEANKVRKLISETGMKKK 403
           G    + K+RKL+ ++G+ K+
Sbjct: 464 GEWFGSEKMRKLMDDSGVNKE 484



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV----KSGTQPTETTF 267
           G +  A  VF+ I   D   +N +I G A     + ++ L+ RM+      G +P + TF
Sbjct: 26  GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
             VL  CT       G+ +  ++    G E        ++ + A  G +  A    +   
Sbjct: 86  PFVLRACTAMGAGDTGVQVHAHVVKA-GCESDAFVKNALIGMHASCGNLGIAAALFD--- 141

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            G    DA  W A+++ C   G I     ++ +     +  ++  + +Y
Sbjct: 142 -GRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAY 189


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 222/378 (58%), Gaps = 4/378 (1%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H   V++G   DP V S +L  Y+ +  + ++RA F +    DVV  T MV      GD 
Sbjct: 137 HGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDV 196

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           + AR+LF+ MP+R+ V+WSA++A Y  +   +E L LF +M   G    E+ LVSVLTAC
Sbjct: 197 DAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTAC 256

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A +G + +G WVH Y +   ++ ++ L TA+VDMYSKCG V +A+ VFE ++ ++   W 
Sbjct: 257 AQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWT 316

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           + +SG+AMNG   + L+LF RM  +G QP   +FVAVL  C+ A +V +G   F++M   
Sbjct: 317 SAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK- 375

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           YGV+P  EHY C+VDL  RAG +++A  FI +       G   VWGALL+A RI+  +++
Sbjct: 376 YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEG---VWGALLNASRIHNSVDL 432

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G     KL  +   + + HV   NIY E+      ++VR ++   G+KK PG S IEV+G
Sbjct: 433 GKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDG 492

Query: 414 VVEEFLAGDNRHAQAGEI 431
            V EF  G   H +  EI
Sbjct: 493 KVHEFYVGGRLHPRYNEI 510



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 33/239 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GYM     + ++  + +ML  G      T   ++ AC  +G L+  G +VH +V   
Sbjct: 217 MIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDR-GKWVHWYVRSR 275

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + ++L++ YS    + TA  +F+   +R+V TWT+ V G    G         
Sbjct: 276 GMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNG--------- 326

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                         M          E L LF++M+  G++PN    V+VL  C+  G + 
Sbjct: 327 --------------MGT--------ECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVD 364

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G        +Y ++        +VD+Y + G +  A+S    +      G W A+++ 
Sbjct: 365 EGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNA 423



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A + A  Q +  H  A R+    +  + + V+ MY+  G V S+ + F  I+  D     
Sbjct: 125 AEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVT 184

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AM++ +A  GD   + +LFD M     Q     + A++    H    R+ L LF+ M
Sbjct: 185 AMVAALAAGGDVDAARDLFDGM----PQRDHVAWSAMIAGYMHVGRSREALMLFDEM 237


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 248/443 (55%), Gaps = 38/443 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG  Q+  P  ++  Y +M     + ++YTFP ++KAC  L  + N G  VH  V++ 
Sbjct: 79  MIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTRLFWV-NTGSAVHGMVLRL 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  V ++LL F++    +  A +LFD S   DVV W++++ GY + GD + AR+LF
Sbjct: 138 GFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAGYARRGDLKVARKLF 197

Query: 121 EKMPERNAVSWSAIMAAYSRISDF-------------------------------KEVLS 149
            +MPER+ VSW+ ++  Y +  +                                K+ L 
Sbjct: 198 NEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALE 257

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-NVILATAVVDMY 208
           LF +M   G+ P+E  L+S+L+ACA LG +  G  VH+      + K + +L  A++DMY
Sbjct: 258 LFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMY 317

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG++  +L VF  I++KD  +WN++I G+A++G  K+SL LF  M ++   P E TFV
Sbjct: 318 AKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFV 377

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            VL  C+HA  + +G   F+ MS+ Y +EP + H  C+VD+L RAG+++EA KFI+    
Sbjct: 378 GVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMK- 436

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDME 387
                +A +W  LL+AC+++G +E+      KL  M       +VL  N+Y   G WD  
Sbjct: 437 --IEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGEWD-G 493

Query: 388 ANKVRKLISETGMKKKPGCSVIE 410
           A KVRKL+ ++G+ K  G S +E
Sbjct: 494 AEKVRKLMDDSGVTKIRGSSFVE 516



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 9/256 (3%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A +LF ++P+ +   ++ ++   S+  +    +SL+ +M    +K +      VL AC  
Sbjct: 61  AHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHFVKGDSYTFPFVLKACTR 120

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L  +  G  VH    R     N ++   ++  ++KCG ++ A S+F+     D  AW+++
Sbjct: 121 LFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSL 180

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A  GD K + +LF+ M     +    ++  ++T       +     LF+       
Sbjct: 181 IAGYARRGDLKVARKLFNEM----PERDLVSWNVMITGYVKQGEMESARMLFDEAPV--- 233

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
               +  +  ++      G+ ++A +   E        D     +LLSAC   G +E G 
Sbjct: 234 --KDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGK 291

Query: 356 RVWRKLAEMGITDFST 371
           +V  K+ E+ +   ST
Sbjct: 292 KVHAKVMEISMGKLST 307


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/450 (36%), Positives = 247/450 (54%), Gaps = 41/450 (9%)

Query: 1   MIRGYMQANFPKLS-----VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           ++RGY +++ P  S     V  ++ ML+ G  P+ YTF  L+KAC      E  G   HA
Sbjct: 99  LLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEE-GRQAHA 157

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
             VK G                              + D D V   T+++ Y + GD   
Sbjct: 158 LAVKLG------------------------------AADHDYVR-PTLINMYAECGDARA 186

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR +F        VS++A++AA  R S   E L LFR+MQ  G+KP    ++SVL+ACA 
Sbjct: 187 ARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACAL 246

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G WVH Y ++  L   V ++TA++DMY+KCG +  A+ VF+G+ +KD  AW+ M
Sbjct: 247 LGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVM 306

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I   A +G  ++++ LF+ M K G +P + TF+ VL  C+H+ +V +GL  F++M   +G
Sbjct: 307 IVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDMKD-HG 365

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P ++HY CV DLLAR+G +E A KFI+E           +W  LLSAC  +G  E+G 
Sbjct: 366 IVPGIKHYGCVTDLLARSGQLERAYKFIDELP---INPTPILWRTLLSACGGHGDFELGK 422

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           RV+ ++ ++  +    +V+  N+    G+  E N VRKL+SE G+ K PGCS IE++  V
Sbjct: 423 RVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDNTV 482

Query: 416 EEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
            EF AGD RH ++ E  +++   +    LV
Sbjct: 483 HEFFAGDGRHPKSQEARKMVDEVIDQLKLV 512



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 115/235 (48%), Gaps = 11/235 (4%)

Query: 116 ARELFEKMPER-NAVSWSAIMAAYSRISDFKE-----VLSLFRQMQEVGMKPNESGLVSV 169
           AR++F+++P   +AV ++ ++  Y+R S+         + +F +M E G+ P+    VS+
Sbjct: 80  ARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L ACA   A  +G   H+ A +     +  +   +++MY++CG   +A  +F G      
Sbjct: 140 LKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTDGGCV 199

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            ++NAMI+    +    ++L LF  M   G +PT  T ++VL+ C     +  G  + + 
Sbjct: 200 VSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLGALELGRWVHDY 259

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
           +  + G+   ++    ++D+ A+ G +E+A    +    G+   D   W  ++ A
Sbjct: 260 VRKI-GLGSLVKVSTALIDMYAKCGSLEDAIDVFQ----GMESKDRQAWSVMIVA 309


>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
          Length = 530

 Score =  278 bits (711), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 152/453 (33%), Positives = 236/453 (52%), Gaps = 14/453 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL---ENFGMFVHAHV 57
           M R ++ +     ++  + DM+  G  P+N      + AC   G      N G  +HA V
Sbjct: 82  MARAHVASGQAAQAIAVFGDMVADGVFPDNVAVAVALGACHGAGSWTARRNPGKMIHALV 141

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           V  G   D FV + L+  Y    ++  +R +FD  P R  +TW  M+  Y + G  + A 
Sbjct: 142 VTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY 201

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACA 174
           E+F  MP R+ VSW+ ++A Y      +E L LFRQM       + PN   + ++L ACA
Sbjct: 202 EMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 261

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE-GISNKDAGAWN 233
             G +  G+WVH+Y +R  +  +  L   ++DMY KCG + +AL VFE     KD  +W 
Sbjct: 262 GAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKKDLFSWT 321

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            +I G+AM+G    +L +FD M  +G  P + T V VL  C H  +V +GL  F +M A 
Sbjct: 322 TVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAK 381

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN--VWGALLSACRIYGKI 351
           + + P++EHY C++DLL R G ++EA   I          D N  +WGA LSAC+++G +
Sbjct: 382 FRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTM-----PMDPNTVIWGAFLSACKVHGNM 436

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
           E+G     +L  +   D    V+  ++Y +A   +   + R+ ++   +KK PGCS IE+
Sbjct: 437 ELGKIAAEELTRLDPDDPWGRVMLSSMYAKAQDWIGLARERREMNSMQVKKTPGCSSIEL 496

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
            G V EF+AG ++H Q  EI  V+      +N+
Sbjct: 497 KGEVHEFVAGGSQHPQYAEICSVLQDVEAQTNV 529



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y  +G  ++AR LF++MPE+  V  +A+  A+       + +++F  M   G+ 
Sbjct: 49  TALLSAYAALGSPDHARRLFDEMPEQGLVPRTAMARAHVASGQAAQAIAVFGDMVADGVF 108

Query: 161 PNESGLVSVLTACAHLGAIT----QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
           P+   +   L AC   G+ T     G  +H+      +  +V ++T ++ +Y + G +  
Sbjct: 109 PDNVAVAVALGACHGAGSWTARRNPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPV 168

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           +  VF+ + ++    WNAM+   A +G    + E+F  M +        ++  VL     
Sbjct: 169 SRRVFDDMPSRSTITWNAMLHQYARHGKVDTAYEMFLAMPRRDV----VSWNTVLAGYCV 224

Query: 277 AKMVRDGLNLFENM--SAVYGVEPQLEHYACVVDLLARAGMVE 317
           A   R+ L LF  M   +   V P +   + ++   A AG +E
Sbjct: 225 AGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLE 267


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/370 (36%), Positives = 221/370 (59%), Gaps = 4/370 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +S++  Y  +  +  A+++F + P++ VV+WT M+ GY   GD ++A  +F  MP +N V
Sbjct: 207 NSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVV 266

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           SW+A+++ Y    +F + L +F  M   G  +P+++ L+S+L+ACAHLG++  G W++SY
Sbjct: 267 SWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSY 326

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
            K+  L  ++ L  A++DM++KCG V +A  VF  +S +    W  M+SG+A+NG  +++
Sbjct: 327 IKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREA 386

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           + LFD+M   GT+P +  F+AVL+ CTH  +V +G  +F+ M   +G++P++EHY C+VD
Sbjct: 387 INLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVD 446

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           LL RAG +EEA +F           +A +W  LL  C+I+G  ++   V  K+ +   ++
Sbjct: 447 LLGRAGKLEEAVRFTARMH---LKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSN 503

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
            S   L  N+    G   +    R  + +  M+K PGCS I+V   V EFLA D RH Q 
Sbjct: 504 PSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQR 563

Query: 429 GEIYRVIHSF 438
            EIYR +  +
Sbjct: 564 KEIYRALSHY 573



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 186/383 (48%), Gaps = 44/383 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  M  +  E N++TF  L+K       LE+ G  +H  ++K GFG   FV +SLL FY+
Sbjct: 62  YSRMKALMVEANSFTFTFLLKCFETSQALED-GRVIHGEILKLGFGSSVFVQNSLLGFYA 120

Query: 78  -LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
                +G+A  +F++ P+RDV++W +M+  Y   G+ ++A  L +KMPERN V+W++++ 
Sbjct: 121 NCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVC 180

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL-E 195
             S+  + +   S+F QM       NE    S+++    +G +     +      Y + E
Sbjct: 181 GLSKAGNMELAHSVFEQMP----LRNEVSWNSMISGYVRIGDVRAAQSIF-----YQMPE 231

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           K V+  TA++  Y+  G + SA ++F  +  K+  +WNAMISG   N +  ++L +F  M
Sbjct: 232 KTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHM 291

Query: 256 VKSG-TQPTETTFVAVLTTCTHAKMVRDG----------------------LNLFENMSA 292
           + +G  +P +TT +++L+ C H   +  G                      +++F     
Sbjct: 292 LINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGD 351

Query: 293 VYGVEPQLEHYA--CVVDL------LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
           V   +    H +  C++        LA  G   EA    ++        D  ++ A+LSA
Sbjct: 352 VENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSA 411

Query: 345 CRIYGKIEVGNRVWRKLA-EMGI 366
           C   G +E G RV+ ++  E GI
Sbjct: 412 CTHGGLVEEGKRVFDQMVQEFGI 434


>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 234/418 (55%), Gaps = 5/418 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  PN   F  ++ AC  L  L   G  +HA+ +K G   + FV SSL++ Y 
Sbjct: 367 YSQMLADGCRPNISCFSSVLSACATLQDLRG-GTRIHANALKMGSSTNLFVSSSLIDMYC 425

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              +   A+ +F+  P+++ V W +++ GY   G    A  LF KMP RN+VSW+ +++ 
Sbjct: 426 KCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISG 485

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y+    F + L+ F  M   G  P E  L SVL ACA+L ++  G  VH+   +  +E N
Sbjct: 486 YAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDN 545

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + + TA+ DMY+K G + S+  VF  +  K+   W AM+ G+A NG A++S+ LF+ M++
Sbjct: 546 IFMGTALCDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIE 605

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G  P E TF+A+L  C+H  +V   ++ FE M A +G+ P+ +HY C+VD+LARAG + 
Sbjct: 606 NGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA-HGIPPKSKHYTCMVDVLARAGCLP 664

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EAE+ + +    L   D + W +LLSAC  Y   E+G R  +KL E+   + + +VL  N
Sbjct: 665 EAEELLMKVSSEL---DTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSN 721

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           +Y   G   +A + R L+    +KK  GCS +++ G    F +   +H  + EIY ++
Sbjct: 722 MYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFSWKEKHPLSLEIYEIL 779



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 190/434 (43%), Gaps = 63/434 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+++    K +   +  ML     PN  T   +IKACV  G  +   M V    VK 
Sbjct: 217 MISGFVRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFD-LAMGVVGLAVKC 275

Query: 61  GFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              E    V +SL+  Y  +     AR +FD    RDVV+WT ++D Y  +GD + AR +
Sbjct: 276 NLFEKSIEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRV 335

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            + MP RN VSW  ++A + +  D  E L L+ QM   G +PN S   SVL+ACA L  +
Sbjct: 336 LDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDL 395

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H+ A +     N+ ++++++DMY KC     A  VF  +  K+   WN++ISG 
Sbjct: 396 RGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGY 455

Query: 240 AMNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFV 268
           + NG   ++  LF++                               M+ SG  P E T  
Sbjct: 456 SWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLS 515

Query: 269 AVLTTCT-----------HAKMVRDGL--NLF---------------ENMSAVYGVEPQL 300
           +VL  C            HA++V+ G+  N+F               ++   V+   P+ 
Sbjct: 516 SVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRVFYQMPEK 575

Query: 301 EH--YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +  +  +V  LA  G  EE+    E+ +      + + + A+L AC   G +E     +
Sbjct: 576 NNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYF 635

Query: 359 RKLAEMGITDFSTH 372
             +   GI   S H
Sbjct: 636 ETMQAHGIPPKSKH 649



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/390 (21%), Positives = 161/390 (41%), Gaps = 71/390 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG----------------------------- 83
           +HAH ++ G   D  V S+LL  Y+   + G                             
Sbjct: 102 LHAHALRSGLATDRSVASNLLTAYAAFARAGDRDQAFRDCVAADAASSFTYDFMVSEHVK 161

Query: 84  -----TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
                +AR LF   P++ VV++TTMVD   K G   +A EL+E+ P  +   ++A+++ +
Sbjct: 162 AGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGF 221

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL---- 194
            R    K+  ++FR+M    ++PN   L+ V+ AC   G     + V   A + +L    
Sbjct: 222 VRNELHKDAFTVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKS 281

Query: 195 ----------------------------EKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
                                        ++V+  TA++D+Y+  G +  A  V + +  
Sbjct: 282 IEVHNSLITLYLRMGDAAAARRVFDDMEVRDVVSWTALLDVYADLGDLDGARRVLDAMPA 341

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           ++  +W  +I+     GD  ++L+L+ +M+  G +P  + F +VL+ C   + +R G  +
Sbjct: 342 RNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRI 401

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
             N +   G    L   + ++D+  +      A++        L   +   W +L+S   
Sbjct: 402 HAN-ALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVF----NSLPEKNTVCWNSLISGYS 456

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             GK+     ++ K+       ++T +  Y
Sbjct: 457 WNGKMVEAEGLFNKMPARNSVSWNTMISGY 486


>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 526

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/430 (35%), Positives = 252/430 (58%), Gaps = 9/430 (2%)

Query: 12  KLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSS 71
           KL+V  +  +  +G   ++Y+ P ++K+ V L      G  +H   V  G  ++  V SS
Sbjct: 94  KLAVSIFRSVRRLGLSFDSYSLPYVLKSVVCLNDF-GLGKQIHCVGVVTGLDKNVSVCSS 152

Query: 72  LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN--AV 129
           L++ YS  + + +AR LFD+      V    M+  Y K+GD  NAR+LF+ M ER+    
Sbjct: 153 LIQMYS-CYDVCSARKLFDEFGGNGCV-LNAMIVAYVKVGDVSNARKLFDSMLERDKDVF 210

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+A+++ Y++  +  E + LFR+MQ   +KP+E  +++VL+ACA LGA+  G W+H+Y 
Sbjct: 211 SWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWIHNYI 270

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
           +++ L K V L  +++DMY+K G++  AL +FE + +K    W  MI+G+A++G  K++L
Sbjct: 271 EKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEAL 330

Query: 250 ELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
            +F  M K    +P E TF+A+L+ C+H  +V  G + F +M + YG+EP++EHY C++D
Sbjct: 331 RVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMID 390

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           LL RAG ++EA++ +   +      +A +WG+LL+A    G  E+     R L  +    
Sbjct: 391 LLGRAGHLQEAKEMV---LRMPFEANAAIWGSLLAASTRCGDAELAEEALRHLTVLEPGH 447

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
              + L  N Y   G   E+  VRK++ + G++K PG S IEVN +V EF+AGD      
Sbjct: 448 CGNYSLLSNTYASLGRWNESRMVRKVMQDAGVEKVPGVSFIEVNNIVYEFIAGDKLSIYF 507

Query: 429 GEIYRVIHSF 438
            +IY V+HS 
Sbjct: 508 VDIYDVLHSL 517



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/252 (23%), Positives = 110/252 (43%), Gaps = 33/252 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY QA+ P  ++  +  M     +P+      ++ AC  LG L + G ++H ++ K 
Sbjct: 215 MISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGAL-HLGEWIHNYIEKH 273

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
              +   + +SL++ Y+    +  A  LF+    + ++TWTTM+ G    G  + A  +F
Sbjct: 274 KLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVF 333

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             M + + V                              KPNE   +++L+AC+H+G + 
Sbjct: 334 SCMEKEDRV------------------------------KPNEVTFIAILSACSHVGLVE 363

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS-VFEGISNKDAGAWNAMISG 238
            G  +  S   RY +E  +     ++D+  + GH+  A   V       +A  W ++++ 
Sbjct: 364 LGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGHLQEAKEMVLRMPFEANAAIWGSLLAA 423

Query: 239 VAMNGDAKKSLE 250
               GDA+ + E
Sbjct: 424 STRCGDAELAEE 435



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 113/284 (39%), Gaps = 66/284 (23%)

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           I A YS  S+ K  +S+FR ++ +G+  +   L  VL +   L     G  +H       
Sbjct: 85  IYALYS--SNAKLAVSIFRSVRRLGLSFDSYSLPYVLKSVVCLNDFGLGKQIHCVGVVTG 142

Query: 194 LEKNVILATAVVDMYS-----------------------------KCGHVHSALSVFEGI 224
           L+KNV + ++++ MYS                             K G V +A  +F+ +
Sbjct: 143 LDKNVSVCSSLIQMYSCYDVCSARKLFDEFGGNGCVLNAMIVAYVKVGDVSNARKLFDSM 202

Query: 225 --SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
              +KD  +W AMISG     +  ++++LF RM     +P E   +AVL+ C     +  
Sbjct: 203 LERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHL 262

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE----------------K 326
           G     N    + +   +  Y  ++D+ A++G + +A +  E                  
Sbjct: 263 G-EWIHNYIEKHKLSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLA 321

Query: 327 MGGLGGGDANVWG----------------ALLSACRIYGKIEVG 354
           + GLG     V+                 A+LSAC   G +E+G
Sbjct: 322 LHGLGKEALRVFSCMEKEDRVKPNEVTFIAILSACSHVGLVELG 365


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 243/434 (55%), Gaps = 39/434 (8%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           NF   S++ Y  M+     P+NYTF  +IK+C  L  L + G  +H HV+  GFG D +V
Sbjct: 90  NFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRH-GRIIHGHVLVNGFGSDVYV 148

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            ++L+ FY                               GK G   NAR++F+KM +R+ 
Sbjct: 149 QTALMSFY-------------------------------GKCGVLCNARKVFDKMRDRSV 177

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           V+W+++++ Y +    KE + LF +M+E+G++PN +  VSVL+ACAHLGA   G WVH Y
Sbjct: 178 VTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEY 237

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
           A    L+ NV+L T++++MY++CG+V  A  VF+ +  ++  AW AMISG   NG   ++
Sbjct: 238 AVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQA 297

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           +ELF  M ++G  P   TFVAVL+ C HA +V +G  +FE+M   Y + P++EH+ C+VD
Sbjct: 298 VELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVD 357

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV--WRKLAEMGI 366
           +L RAG+++EA  FI+E           +W A+L AC+++    +G +V   R  +E G 
Sbjct: 358 MLGRAGLLDEAYNFIKEIHEEPAPA---IWTAMLGACKMHKNFGLGAQVAEHRLASEPG- 413

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
            + + +V+  NIY  AG   +   VR  +    +KK+ G S I+++     F  GD  H 
Sbjct: 414 -NPAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHT 472

Query: 427 QAGEIYRVIHSFLK 440
           +  EIY  +   ++
Sbjct: 473 ETNEIYHYLDQLMR 486



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 167/404 (41%), Gaps = 68/404 (16%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            P++  +  L++A    GP       VHAHV+  G+G   F+++ LL        +   R
Sbjct: 9   HPHSPAYNLLLQA----GPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTR 64

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +F   P+ D   +T+++    K  +F                      + YS       
Sbjct: 65  QIFLIVPNPDSFLFTSLIRSTSKFHNF----------------------SVYS------- 95

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            L  + +M    + P+     SV+ +CA L A+  G  +H +        +V + TA++ 
Sbjct: 96  -LYFYTRMVLSNVAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMS 154

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
            Y KCG + +A  VF+ + ++    WN+MISG   NG AK+++ LFDRM + G +P   T
Sbjct: 155 FYGKCGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSAT 214

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA------- 319
           FV+VL+ C H      G  + E  +   G++  +     ++++  R G V +A       
Sbjct: 215 FVSVLSACAHLGAFILGCWVHE-YAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSM 273

Query: 320 -EKFIEEKMGGLGGGDANVWG-----------------------ALLSACRIYGKIEVGN 355
            E+ +      + G   N +G                       A+LSAC   G +  G 
Sbjct: 274 KERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGR 333

Query: 356 RVWRKLAE--MGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397
           RV+  + E    + +   HV   ++   AG   EA    K I E
Sbjct: 334 RVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHE 377



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q  F K ++  +  M ++G EPN+ TF  ++ AC  LG     G +VH + V  
Sbjct: 183 MISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFI-LGCWVHEYAVGN 241

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  + +SL+  Y+    +  AR +FD   +R+VV WT M+ GYG  G    A ELF
Sbjct: 242 GLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELF 301

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M  RN                              G+ PN    V+VL+ACAH G + 
Sbjct: 302 HEM-RRN------------------------------GLLPNSITFVAVLSACAHAGLVN 330

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA-WNAMISG 238
           +G  V  S  + Y L   V     +VDM  + G +  A +  + I  + A A W AM+  
Sbjct: 331 EGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGA 390

Query: 239 VAMNGD 244
             M+ +
Sbjct: 391 CKMHKN 396


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 243/441 (55%), Gaps = 43/441 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG----FEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           +IRG      P+ +V  Y  ML  G      P+  TFP +++AC  +G  +  G+ VHAH
Sbjct: 49  LIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDT-GVQVHAH 107

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMG-------------------------------TA 85
           VVK G   D FV ++L+  ++    +G                                A
Sbjct: 108 VVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 167

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P +D+V+W  M+  Y K GD   ARELF+++PER+ VSW+ +++ Y R     
Sbjct: 168 RDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHL 227

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILAT 202
             L LF QMQ +G KP+   ++S+L+ACA  G +  G  +HS        +N   V+L  
Sbjct: 228 HALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGN 286

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++DMY+KCG + SA  VF  + +KD   WN+++ G+A++G   +S+++F++M+K   +P
Sbjct: 287 ALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E TFVAVL  C+H  MV  G   F  M   Y VEP ++HY C+VD+L RAG+++EA +F
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEF 406

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I+         ++ +W  LLSACR++G+IE+     R+L +    +   +VL  NIY   
Sbjct: 407 IDTMK---CEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASV 463

Query: 383 GWDMEANKVRKLISETGMKKK 403
           G    + K+RKL+ ++G+ K+
Sbjct: 464 GEWFGSEKMRKLMDDSGVNKE 484


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 152/435 (34%), Positives = 243/435 (55%), Gaps = 39/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +    K ++  + +M+    +P+  T   ++ AC     +E  G  VH+ +   
Sbjct: 206 LISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIE-LGRQVHSWIDDH 264

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L                               +D Y K G+ E A  LF
Sbjct: 265 GFGSNLKIVNAL-------------------------------IDLYIKCGEVETASGLF 293

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PNE  ++S+L ACAHLGAI 
Sbjct: 294 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAID 353

Query: 181 QGLWVHSYA-KRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMY+KCG + +A  VF+ + N+   +WNAMI G
Sbjct: 354 IGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFG 413

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  + ++F RM K G +P + TFV +L+ C+H+ M+  G ++F +M+  Y + P
Sbjct: 414 FAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITP 473

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +LEHY C++DLL  +G+ +EAE+ I   +M      D  +W +LL AC+++G +E+G   
Sbjct: 474 KLEHYGCMIDLLGHSGLFKEAEEMINSMEM----DPDGVIWCSLLKACKMHGNVELGESF 529

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            + L ++   +  ++VL  NIY  AG   E  K R L+++ GMKK PGCS IE++ VV E
Sbjct: 530 AQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHE 589

Query: 418 FLAGDNRHAQAGEIY 432
           F+ GD  H +  EIY
Sbjct: 590 FIIGDKLHPRNREIY 604



 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 122/396 (30%), Positives = 214/396 (54%), Gaps = 35/396 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  +++ Y+ M+ +G  PN+YTFP L+KAC         G  +H HV+K 
Sbjct: 74  MFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFRE-GQQIHGHVLKL 132

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V +SL+  Y    +   AR +FD+S  RDVV++T ++ GY   G   +A+++F
Sbjct: 133 GCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+   ++KE L LF++M +  +KP+ES +V+VL+ACA   +I 
Sbjct: 193 DEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIE 252

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D+Y KCG V +A  +FEG+S KD  +WN +I G  
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYT 312

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P E T +++L  C H   +  G  ++++ +   + GV  
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYID-KRLKGVSN 371

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMG-GLGGGDANVWG------------------ 339
                  ++D+ A+ G +E A++  +  +   L   +A ++G                  
Sbjct: 372 PSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMR 431

Query: 340 ------------ALLSACRIYGKIEVGNRVWRKLAE 363
                        LLSAC   G +++G  ++R + E
Sbjct: 432 KDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTE 467



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 139/344 (40%), Gaps = 68/344 (19%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
           N+    L+  C  L  L      +HA ++K G     + +S L+EF  L           
Sbjct: 2   NHPSLSLLHNCKTLQSLR----IIHAKMIKTGLHNTNYALSKLIEFSVL----------- 46

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
             SP  D +T+   V               F+ + E N + W+ +   ++  SD    L 
Sbjct: 47  --SPHFDGLTYAISV---------------FDSIQEPNLLIWNTMFRGHALSSDPVSALY 89

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           L+  M  +G+ PN      +L ACA   A  +G  +H +  +   + ++ + T+++ MY 
Sbjct: 90  LYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYV 149

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMN--------------------------- 242
           K G    A  VF+  S++D  ++ A+I G A N                           
Sbjct: 150 KNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISG 209

Query: 243 ----GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
               G+ K++LELF  M+K+  +P E+T V VL+ C  +  +  G  +   +   +G   
Sbjct: 210 YAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDD-HGFGS 268

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            L+    ++DL  + G VE A    E    GL   D   W  L+
Sbjct: 269 NLKIVNALIDLYIKCGEVETASGLFE----GLSYKDVISWNTLI 308


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 147/359 (40%), Positives = 215/359 (59%), Gaps = 4/359 (1%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           KM  A  LF++ P RDVV+W  MVDGY K+G+ + AR LF++MPER+ +S +A+MA Y +
Sbjct: 268 KMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGYVQ 327

Query: 141 ISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
                E L+ F  M     + P+ + L+  L+A A LG   +G+ +H Y +      +  
Sbjct: 328 NGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEK 387

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L  A++DMY+KCG + +ALSVFE I +K    WNA+I G+A++G  + + ELF  M K  
Sbjct: 388 LGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFMEMEKLF 447

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P + TF+ VL  C HA +V++GL  FE M  V+ VEP+L+HY C+VD+L RAG VEEA
Sbjct: 448 VKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILGRAGHVEEA 507

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
           +KF+E+    +   D  VW  LLSACR +    +G  V + L  +   + S++VL  NIY
Sbjct: 508 KKFVEKM--PIEPNDV-VWRTLLSACRNHENFTIGEPVAKHLISVDSYNPSSYVLLSNIY 564

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
              G   +  ++R ++ +  +KK PGCS IE+ G V EF   D  H Q  EIY ++ S 
Sbjct: 565 AGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQVREIYSMLDSL 623



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 177/368 (48%), Gaps = 18/368 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ +     P+ +   +  ML+ G   + ++F  ++KAC  LG ++  GM +H  + + 
Sbjct: 93  IIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKE-GMQIHGLLGRM 151

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G D F+ + L+  Y     +G AR LFD+   RD V++ +M+DGY K G  ++ARELF
Sbjct: 152 EIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELF 211

Query: 121 EKMP--ERNAVSWSAIMAAYSRISD-FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + MP  ++N +SW+++++ Y+R  +  +    LF +M     K +     S++  C   G
Sbjct: 212 DVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMP----KRDLISWNSMIDGCVKCG 267

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +     + +   +    ++V+    +VD Y+K G +  A  +F+ +  +D  + NAM++
Sbjct: 268 KMENAHHLFNQMPK----RDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMA 323

Query: 238 GVAMNGDAKKSLELF-DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           G   NG   ++L  F D + +    P   T +  L+         +G+ L   +    G 
Sbjct: 324 GYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIED-NGF 382

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
               +    ++D+ A+ G ++ A    E+    +     + W A++    I+G  EV   
Sbjct: 383 SLSEKLGVALIDMYAKCGSIDNALSVFED----IDDKSIDHWNAIIGGLAIHGLGEVAFE 438

Query: 357 VWRKLAEM 364
           ++ ++ ++
Sbjct: 439 LFMEMEKL 446



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 153/356 (42%), Gaps = 45/356 (12%)

Query: 27  EPNNYTFPPLIKACVILGP----LENFGMFVHAHVVKFGFGEDPFVVSSL-LEFYSLVHK 81
           +P N T P LI     L P    L +    +H+ ++  GF  +P + + + L F S  HK
Sbjct: 9   QPWNSTHPTLI-----LLPKSKTLHDVNQ-IHSRLITTGFINNPSLTTRIILNFSSSSHK 62

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
                      P  +   +  M   +G+           +   + N   W+AI+ ++S  
Sbjct: 63  -----------PLVEFARYLFMSRHFGR-----------KHRKQDNPFLWNAIIKSFSHG 100

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
            D +E   +F  M E G+  ++     VL AC+ LG I +G+ +H    R  +  +V L 
Sbjct: 101 EDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLLGRMEIGSDVFLQ 160

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
             ++ +Y +CG +  A  +F+ +  +D+ ++N+MI G   +G  K + ELFD  V    Q
Sbjct: 161 NCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVKSARELFD--VMPMEQ 218

Query: 262 PTETTFVAVLTTCTHAKM-VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
               ++ ++++    ++  +R    LFE M      +  L  +  ++D   + G +E A 
Sbjct: 219 KNLISWNSMISGYARSEEGLRVAWELFEEMP-----KRDLISWNSMIDGCVKCGKMENAH 273

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
               +    +   D   W  ++      G+I++   ++ ++ E  +   +  +  Y
Sbjct: 274 HLFNQ----MPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGY 325


>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
          Length = 435

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 145/414 (35%), Positives = 238/414 (57%), Gaps = 6/414 (1%)

Query: 25  GFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKM 82
           G EPN+ TF  L+     +L   E  G  +H +  K G      +V +++L  YS   + 
Sbjct: 9   GVEPNHITFIALLSGWGDLLSGSEALGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRF 68

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             AR +FD   +++ VTW TM+DGY + G  ++A +LF++MPER+ +SW+A++  + +  
Sbjct: 69  RKARLVFDYMEEKNSVTWNTMIDGYMRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKG 128

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             +E L+ FR+MQ  G+KP+   +++ L AC +LGA++ GLW+H Y      + NV ++ 
Sbjct: 129 FHEEALAWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVVSQDFKNNVRVSN 188

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG A +SL  F +M + G +P
Sbjct: 189 SLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKP 248

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
              TF   L  C H  +V +GL  F++M   Y + P++EHY C+VDL +RAG +E+A K 
Sbjct: 249 NAVTFTGALAACNHVGLVEEGLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKV 308

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVLSYNIYKE 381
           ++         +  V G+LL+ACR  G   V   RV + L+++ +   S +V+  N+Y  
Sbjct: 309 VQSMP---MKPNEVVIGSLLAACRTQGNNTVLAERVMKHLSDLNVKSHSNYVILSNMYAA 365

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            G    A+K+R+ +   G+KK+PG S IE++     F+AGDN H +   I  V+
Sbjct: 366 DGKWEGASKMRRKMKGLGLKKEPGFSSIEIDDCTHVFMAGDNTHVETTNIREVL 419


>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
 gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
          Length = 488

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 147/424 (34%), Positives = 232/424 (54%), Gaps = 7/424 (1%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVIL-GPLENFGMFVHAHVVKFGFGEDPF 67
             P   VF Y  M+  G   +N+T+  ++KAC  L  P E  G  VH  ++K G   D  
Sbjct: 71  RIPSPDVFVYNTMIR-GLTMDNFTYTFVLKACSHLKAPFE--GKQVHCQIIKAGIVPDTH 127

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           + SSL+  Y+    +  A  +  +  + + +    M+ GY   G  + AR++F+ M  ++
Sbjct: 128 IHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKD 187

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           A SWSA++  Y++     E L+LF+ M    + PNE+ LVS+L+AC  LG + QG W+H+
Sbjct: 188 AASWSALITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQGRWIHA 247

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           Y  +  +  +  L TA++DMY+K G +     +F+ ++ +D   W  MIS  A++G A K
Sbjct: 248 YIDKTRVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASK 307

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
             +LFD M+  G +P +  FVA+L+ C+HA  V +G   F  M   +G++P +EHY C+V
Sbjct: 308 CFQLFDEMLADGIRPNKVIFVAILSACSHAGCVEEGRQYFSQMEHGFGIKPSIEHYGCMV 367

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           DLL RAG++ +AE+ I   +      ++ +WG+LL ACR +  ++ G   +  L E+  T
Sbjct: 368 DLLGRAGLLADAEQLI---LSMPKQPNSIIWGSLLGACRTHNDLKRGTWAFENLMELEPT 424

Query: 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
               H L+  ++  AG   EA K+RK+I E  M    G S IEV G V EF  G   H +
Sbjct: 425 SGDRHKLAGLMFANAGEKEEAAKIRKMIHEKEMVTTCGSSFIEVEGAVHEFTVGYTVHNK 484

Query: 428 AGEI 431
           A +I
Sbjct: 485 ARDI 488



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 36/265 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +      ++  + DM+     PN      L+ AC  LG L   G ++HA++ K 
Sbjct: 194 LITGYTKNGMHTEALALFQDMMVSHILPNEAALVSLLSACGQLGTLHQ-GRWIHAYIDKT 252

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  + ++L++ Y+    +     LF K   RDVVTW  M+  +   G      +LF
Sbjct: 253 RVLMSTKLTTALIDMYAKSGSIECGYGLFQKMARRDVVTWGVMISAFAIHGHASKCFQLF 312

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M                 ++D              G++PN+   V++L+AC+H G + 
Sbjct: 313 DEM-----------------LAD--------------GIRPNKVIFVAILSACSHAGCVE 341

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
           +G    S  +  + ++ ++     +VD+  + G +  A  +   +  + ++  W +++  
Sbjct: 342 EGRQYFSQMEHGFGIKPSIEHYGCMVDLLGRAGLLADAEQLILSMPKQPNSIIWGSLLGA 401

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPT 263
              + D K+    F+ +++   +PT
Sbjct: 402 CRTHNDLKRGTWAFENLME--LEPT 424



 Score = 39.7 bits (91), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 32/179 (17%), Positives = 72/179 (40%), Gaps = 26/179 (14%)

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           + A  +++ Y     ++ A S+FE I + D   +N MI G+ M+                
Sbjct: 47  LCARRLLEAYVTMSQIYYAFSIFERIPSPDVFVYNTMIRGLTMD---------------- 90

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
                  T+  VL  C+H K   +G  +   +    G+ P    ++ ++ +   +G +++
Sbjct: 91  -----NFTYTFVLKACSHLKAPFEGKQVHCQIIKA-GIVPDTHIHSSLIHMYTNSGSIDD 144

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           AE+     +G     +     A++S     G+++   +++  +A      +S  +  Y 
Sbjct: 145 AERV----LGEFSEENTLAKNAMISGYLTEGRVDKARKMFDDMAAKDAASWSALITGYT 199


>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Glycine max]
          Length = 522

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 151/423 (35%), Positives = 241/423 (56%), Gaps = 12/423 (2%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK-MGTA 85
            PN++ FP  +K C    P       +HA +VK GF E P V ++L++ YS V   +G A
Sbjct: 104 RPNHFIFPHALKTC----PESCAAESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGNA 159

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           + +FD+  DR VV++T MV G+ ++GD E+A  +F +M +R+  SW+A++A  ++   F 
Sbjct: 160 KKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAFT 219

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + + LFR+M     +PN   +V  L+AC H+G +  G W+H Y  +  L  +  +  A+V
Sbjct: 220 QGIELFRRMVFECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGLAFDSFVLNALV 279

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK--SGTQPT 263
           DMY KCG +  A  VFE    K   +WN+MI+  A++G +  ++ +F++MV+   G +P 
Sbjct: 280 DMYGKCGSLGKARKVFEMNPEKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGGGVRPD 339

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           E TFV +L  CTH  +V  G   FE M   YG+EPQ+EHY C++DLL RAG  +EA   +
Sbjct: 340 EVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDEAMDVV 399

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +   G     D  VWG+LL+ C+++G+ ++     +KL E+   +    ++  N+Y E G
Sbjct: 400 K---GMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYRIMLANVYGELG 456

Query: 384 -WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMS 442
            WD E   V + + +    K PGCS IEV+  V +F + D  + +  ++Y V+ S +   
Sbjct: 457 KWD-EVRNVWRTLKQQKSYKVPGCSWIEVDDQVHQFYSLDKSNPKTEDLYIVLESLVGFR 515

Query: 443 NLV 445
           N V
Sbjct: 516 NEV 518


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/378 (40%), Positives = 222/378 (58%), Gaps = 4/378 (1%)

Query: 54   HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
            H   V++G   DP V S +L  Y+ +  + ++RA F +    DVV  T MV      GD 
Sbjct: 1342 HGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAALAAGGDV 1401

Query: 114  ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
            + AR+LF+ MP+R+ V+WSA++A Y  +   +E L LF +M   G    E+ LVSVLTAC
Sbjct: 1402 DAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTAC 1461

Query: 174  AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            A +G + +G WVH Y +   ++ ++ L TA+VDMYSKCG V +A+ VFE ++ ++   W 
Sbjct: 1462 AQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWT 1521

Query: 234  AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            + +SG+AMNG   + L+LF RM  +G QP   +FVAVL  C+ A +V +G   F++M   
Sbjct: 1522 SAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMDK- 1580

Query: 294  YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            YGV+P  EHY C+VDL  RAG +++A  FI +       G   VWGALL+A RI+  +++
Sbjct: 1581 YGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEG---VWGALLNASRIHNSVDL 1637

Query: 354  GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
            G     KL  +   + + HV   NIY E+      ++VR ++   G+KK PG S IEV+G
Sbjct: 1638 GKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDG 1697

Query: 414  VVEEFLAGDNRHAQAGEI 431
             V EF  G   H +  EI
Sbjct: 1698 KVHEFYVGGRLHPRYNEI 1715



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/239 (23%), Positives = 100/239 (41%), Gaps = 33/239 (13%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MI GYM     + ++  + +ML  G      T   ++ AC  +G L+  G +VH +V   
Sbjct: 1422 MIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDR-GKWVHWYVRSR 1480

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G      + ++L++ YS    + TA  +F+   +R+V TWT+ V G    G         
Sbjct: 1481 GMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNG--------- 1531

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                          M          E L LF++M+  G++PN    V+VL  C+  G + 
Sbjct: 1532 --------------MGT--------ECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVD 1569

Query: 181  QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            +G        +Y ++        +VD+Y + G +  A+S    +      G W A+++ 
Sbjct: 1570 EGRACFDSMDKYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNA 1628



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 174  AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            A + A  Q +  H  A R+    +  + + V+ MY+  G V S+ + F  I+  D     
Sbjct: 1330 AEVNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEIACPDVVCVT 1389

Query: 234  AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            AM++ +A  GD   + +LFD M     Q     + A++    H    R+ L LF+ M
Sbjct: 1390 AMVAALAAGGDVDAARDLFDGM----PQRDHVAWSAMIAGYMHVGRSREALMLFDEM 1442


>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 154/416 (37%), Positives = 245/416 (58%), Gaps = 12/416 (2%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGTAR 86
           P++ TFP L +A   L       + +HAH ++ G    D +V +SL+  Y+       AR
Sbjct: 58  PSHLTFPFLGRAAARLAS-PRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACALPDLAR 116

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD+ P  ++V+W  ++DGY K  D  +AR +F +MP+R+ VSWSA++    +  + +E
Sbjct: 117 RLFDEIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHRE 176

Query: 147 VLSLFRQMQEV----GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            L+LF  M+      G++ N+  +VSVL ACAHLG + +G  +H Y + +    N+ LAT
Sbjct: 177 ALALFEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLAT 236

Query: 203 AVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           ++VDMY+KCG +  AL VF    ++  D   WNA+I G+A++G + +S+E+F  M  SG 
Sbjct: 237 SLVDMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGV 296

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P E T++ +L+ C H  +V +   LF ++  V G+ P +EHYAC+VD+L RAG +EEA 
Sbjct: 297 VPDEITYLVLLSACVHGGLVGEAWRLFRSLE-VQGLRPHVEHYACLVDVLGRAGHLEEAY 355

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
             ++         + +V GALL+AC ++G +E+G  V R+L ++       ++   NIY 
Sbjct: 356 GVVKSMP---MEPNVSVLGALLNACHLHGWVELGEVVGRQLVQLQPDHDGRYIGLSNIYA 412

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
            A    EA K RK++ E G+KK PG S I+V G +  F+A D  H+ + EIY +++
Sbjct: 413 IARRWQEAKKARKVMEERGVKKIPGFSEIDVGGRLHRFIAHDKAHSGSREIYALLN 468


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 145/413 (35%), Positives = 233/413 (56%), Gaps = 6/413 (1%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +ML  G  P+  T    + AC  L  + + G + H +V++ G      V ++++  Y   
Sbjct: 331 EMLKHGPRPDRITMLSAVSACSELDDV-SCGKWCHGYVLRNGLEGWDNVCNAIINMYMKC 389

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            K   A  +FD+  ++  V+W +++ G+ + GD E+A ++F  MP+ + VSW+ ++ A  
Sbjct: 390 GKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALV 449

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           + S FKE + LFR MQ  G+  ++  +V V +AC +LGA+    W+H Y K+  +  ++ 
Sbjct: 450 QESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMH 509

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L TA+VDM+++CG   SA+ VF  +  +D  AW A I  +AM G+   ++ELFD M++ G
Sbjct: 510 LGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQG 569

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P    FVA+LT  +H  +V  G ++F +M  +YG+ PQ  HY C+VDLL RAG++ EA
Sbjct: 570 IKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEA 629

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
              I      +   D  +WG+LL+ACR++  +++      +++E+       HVL  NIY
Sbjct: 630 LSLINSMQ--MEPNDV-IWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIY 686

Query: 380 KEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             AG WD +  KVR  + E G  K PG S IE+NG + EF  GD  H +   I
Sbjct: 687 ASAGRWD-DVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHI 738



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 151/301 (50%), Gaps = 43/301 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG+        ++  +  ++ MG  P+N+TFP ++ AC     L   G  VH  +VK 
Sbjct: 110 LIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTE-GFQVHGAIVKM 168

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV +SL+ FY                               G+ G+ +  R +F
Sbjct: 169 GFERDMFVENSLIHFY-------------------------------GECGEIDCMRRVF 197

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KM ERN VSW++++  Y++   +KE +SLF +M EVG++PN   +V V++ACA L  + 
Sbjct: 198 DKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQ 257

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V +      LE N ++  A+VDMY KCG +  A  +F+   +K+   +N ++S   
Sbjct: 258 LGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYV 317

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFEN 289
             G A++ L +   M+K G +P   T ++ ++ C+           H  ++R+GL  ++N
Sbjct: 318 RQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDN 377

Query: 290 M 290
           +
Sbjct: 378 V 378


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 251/432 (58%), Gaps = 5/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M   Y++    + ++  +  M+D G  P+  +    I +C  L  +  +G   H +V++ 
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNIL-WGKSCHGYVLRN 366

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF     + ++L++ Y   H+  TA  +FD+  ++ VVTW ++V GY + G+ + A E F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           E MPE+N VSW+ I++   + S F+E + +F  MQ + G+  +   ++S+ +AC HLGA+
Sbjct: 427 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 486

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
               W++ Y ++  ++ +V L T +VDM+S+CG   SA+S+F  ++N+D  AW A I  +
Sbjct: 487 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 546

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM G+A++++ELFD M++ G +P    FV  LT C+H  +V+ G  +F +M  ++GV P+
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 606

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
             HY C+VDLL RAG++EEA + IE+    +   D  +W +LL+ACR+ G +E+      
Sbjct: 607 DVHYGCMVDLLGRAGLLEEAVQLIEDM--PMEPNDV-IWNSLLAACRVQGNVEMAAYAAE 663

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           K+  +      ++VL  N+Y  AG   +  KVR  + E G++K PG S I++ G   EF 
Sbjct: 664 KIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFT 723

Query: 420 AGDNRHAQAGEI 431
           +GD  H +   I
Sbjct: 724 SGDESHPEMPNI 735



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 154/302 (50%), Gaps = 44/302 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  +     ++  +L M++ G  P+ YTFP  + AC       N G+ +H  +VK 
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGN-GIQIHGLIVKM 163

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+ +D FV +SL+ FY+                               + G+ ++AR++F
Sbjct: 164 GYAKDLFVQNSLVHFYA-------------------------------ECGELDSARKVF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAI 179
           ++M ERN VSW++++  Y+R    K+ + LF R +++  + PN   +V V++ACA L  +
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  V+++ +   +E N ++ +A+VDMY KC  +  A  +F+     +    NAM S  
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFE 288
              G  +++L +F+ M+ SG +P   + ++ +++C+           H  ++R+G   ++
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372

Query: 289 NM 290
           N+
Sbjct: 373 NI 374



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 37/297 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY + +F K +V  +  M+ D    PN+ T   +I AC  L  LE  G  V+A +  
Sbjct: 206 MICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET-GEKVYAFIRN 264

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   +  +VS+L                               VD Y K    + A+ L
Sbjct: 265 SGIEVNDLMVSAL-------------------------------VDMYMKCNAIDVAKRL 293

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++    N    +A+ + Y R    +E L +F  M + G++P+   ++S +++C+ L  I
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNI 353

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G   H Y  R   E    +  A++DMY KC    +A  +F+ +SNK    WN++++G 
Sbjct: 354 LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
             NG+   + E F+ M +        ++  +++      +  + + +F +M +  GV
Sbjct: 414 VENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 6/245 (2%)

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFEN---ARELFEKMPERNAV-SWSAIMAAYSRI 141
           R+L  +  D DV T T +V    ++G  E+   A+E+FE          +++++  Y+  
Sbjct: 53  RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
               E + LF +M   G+ P++      L+ACA   A   G+ +H    +    K++ + 
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQ 172

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GT 260
            ++V  Y++CG + SA  VF+ +S ++  +W +MI G A    AK +++LF RMV+    
Sbjct: 173 NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEV 232

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P   T V V++ C   + +  G  ++  +    G+E      + +VD+  +   ++ A+
Sbjct: 233 TPNSVTMVCVISACAKLEDLETGEKVYAFIRN-SGIEVNDLMVSALVDMYMKCNAIDVAK 291

Query: 321 KFIEE 325
           +  +E
Sbjct: 292 RLFDE 296


>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 788

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 234/418 (55%), Gaps = 5/418 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  PN   F  ++ AC  L  L   G  +HA+ +K G   + FV SSL++ Y 
Sbjct: 367 YSQMLADGCRPNISCFSSVLSACATLQDLRG-GTRIHANALKMGSSTNLFVSSSLIDMYC 425

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              +   A+ +F+  P+++ V W +++ GY   G    A  LF KMP RN+VSW+ +++ 
Sbjct: 426 KCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISG 485

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y+    F + L+ F  M   G  P E  L SVL ACA+L ++  G  VH+   +  +E N
Sbjct: 486 YAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDN 545

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + + TA+ DMY+K G + S+  VF  +  K+   W AM+ G+A NG A++S+ LF+ M++
Sbjct: 546 IFMGTALSDMYAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIE 605

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G  P E TF+A+L  C+H  +V   ++ FE M A +G+ P+ +HY C+VD+LARAG + 
Sbjct: 606 NGIAPNEHTFLAILFACSHCGLVEQAIHYFETMQA-HGIPPKSKHYTCMVDVLARAGCLP 664

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EAE+ + +    L   D + W +LLSAC  Y   E+G R  +KL E+   + + +VL  N
Sbjct: 665 EAEELLMKVSSEL---DTSSWSSLLSACSTYRNKEIGERAAKKLHELEKDNTAGYVLLSN 721

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           +Y   G   +A + R L+    +KK  GCS +++ G    F +   +H  + EIY ++
Sbjct: 722 MYASCGKWKDAAETRILMQGASLKKDAGCSWLQLRGQYHAFFSWKEKHPLSLEIYEIL 779



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/434 (27%), Positives = 187/434 (43%), Gaps = 63/434 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+++    K +   +  ML     PN  T   +IKACV  G  +   M V    VK 
Sbjct: 217 MISGFVRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFD-LAMGVVGLAVKC 275

Query: 61  GFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              E    V +SL+  Y  +     A  +FD    RDVV+WT ++D Y  +GD   AR +
Sbjct: 276 NLFEKSIEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRV 335

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            + MP RN VSW  ++A + +  D  E L L+ QM   G +PN S   SVL+ACA L  +
Sbjct: 336 LDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDL 395

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H+ A +     N+ ++++++DMY KC     A  VF  +  K+   WN++ISG 
Sbjct: 396 RGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGY 455

Query: 240 AMNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFV 268
           + NG   ++  LF++                               M+ SG  P E T  
Sbjct: 456 SWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYAMLASGHIPGEITLS 515

Query: 269 AVLTTCT-----------HAKMVRDGL--NLF--ENMSAVYGVEPQLEH----------- 302
           +VL  C            HA++V+ G+  N+F    +S +Y     L+            
Sbjct: 516 SVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRVFYQMPEK 575

Query: 303 ----YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
               +  +V  LA  G  EE+    E+ +      + + + A+L AC   G +E     +
Sbjct: 576 NNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLVEQAIHYF 635

Query: 359 RKLAEMGITDFSTH 372
             +   GI   S H
Sbjct: 636 ETMQAHGIPPKSKH 649



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/390 (21%), Positives = 160/390 (41%), Gaps = 71/390 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK------------------------------- 81
           +HAH  + G   D  V S+LL  Y+   +                               
Sbjct: 102 LHAHAFRSGLTADRSVASNLLTAYAAFTRAADRDQAFRDCVAADAASSFTYDFMVSEHVK 161

Query: 82  ---MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
              + +AR LF   P++ VV++TTMVD   K G   +A EL+E+ P  +   ++A+++ +
Sbjct: 162 AGDIASARRLFYGMPEKSVVSYTTMVDALMKRGSVRDAVELYERCPLHSVAFFTAMISGF 221

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL---- 194
            R    K+   +FR+M    ++PN   L+ V+ AC   G     + V   A + +L    
Sbjct: 222 VRNELHKDAFPVFRKMLTCSVRPNVVTLICVIKACVGAGEFDLAMGVVGLAVKCNLFEKS 281

Query: 195 ----------------------------EKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
                                        ++V+  TA++D+Y+  G ++ A  V + +  
Sbjct: 282 IEVHNSLITLYLRMGDAAAAHRVFDDMEVRDVVSWTALLDVYADLGDLYGARRVLDAMPA 341

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           ++  +W  +I+     GD  ++L+L+ +M+  G +P  + F +VL+ C   + +R G  +
Sbjct: 342 RNEVSWGTLIARHEQKGDTAEALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRI 401

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
             N +   G    L   + ++D+  +      A++        L   +   W +L+S   
Sbjct: 402 HAN-ALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVF----NSLPEKNTVCWNSLISGYS 456

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             GK+     ++ K+       ++T +  Y
Sbjct: 457 WNGKMVEAEGLFNKMPARNSVSWNTMISGY 486


>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
          Length = 494

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 239/421 (56%), Gaps = 6/421 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  L+ AC       E     +H +  K G      +V +++L  
Sbjct: 56  FSDMRLAGIEPNHITFISLLSACGNFPSGSEALSDLLHGYACKLGLDRSHVMVGTAILGM 115

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS    +  AR +FD   D++ VTW TM+DGY + G  +NA ++F++MPER+ +SW+A++
Sbjct: 116 YSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKVFDEMPERDLISWTAMI 175

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E L+ FR+MQ  G+ P+   +++ L AC +LGA++ GLW H Y       
Sbjct: 176 TGFVKKGFHEEALAWFREMQISGVNPDYVAIIAALAACTNLGALSFGLWAHRYVVSQDFR 235

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 236 NNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTVVSWNSVIVGFAANGNANESLVYFRKM 295

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G +P   TF   LT C+H  +V +G   F+ M   Y + P++EH+ C+VDL +RAG 
Sbjct: 296 QEEGFKPDAVTFTGALTACSHVGLVEEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGR 355

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVL 374
           +E+A K +E         +  V G+LL+ACR +G   +   R+ + ++++ +   S +V+
Sbjct: 356 LEDAIKVVESMP---MKPNEVVIGSLLAACRNHGNHTILAERLMKHISDLDVKGHSNYVI 412

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
             N+Y   G    A+K+R+ +   G+KK+PG S IE++     F+AGDN H +   I  V
Sbjct: 413 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGYSSIEIDDYTHVFMAGDNAHVETAYIREV 472

Query: 435 I 435
           +
Sbjct: 473 L 473



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 95/186 (51%), Gaps = 11/186 (5%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL--WVH 186
           VSW++ +   SR     E    F  M+  G++PN    +S+L+AC +  + ++ L   +H
Sbjct: 34  VSWTSRITLLSRDDRLAEAAREFSDMRLAGIEPNHITFISLLSACGNFPSGSEALSDLLH 93

Query: 187 SYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
            YA +  L++ +V++ TA++ MYSK GHV  A  VF+ + +K++  WN MI G   NG  
Sbjct: 94  GYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGYMRNGQV 153

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
             ++++FD M     +    ++ A++T         + L  F  M  + GV P    Y  
Sbjct: 154 DNAVKVFDEM----PERDLISWTAMITGFVKKGFHEEALAWFREMQ-ISGVNPD---YVA 205

Query: 306 VVDLLA 311
           ++  LA
Sbjct: 206 IIAALA 211


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 245/436 (56%), Gaps = 39/436 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++    K ++  Y DM+    +P+  T   ++ AC   G +E  G  +H+ +   
Sbjct: 168 MISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIE-LGRQLHSWIEDH 226

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V+ L++ YS                               K G+ E A  LF
Sbjct: 227 GFGSNIKIVNVLIDLYS-------------------------------KCGEVETACGLF 255

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + + +++ +SW+ ++  ++ ++ +KE L LF++M   G  PN+  ++SVL ACAHLGAI 
Sbjct: 256 QGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 315

Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMY+KCG + +A  VF+ +  +   +WNAMI G
Sbjct: 316 IGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFG 375

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  + +LF +M K+G  P + TFV +L+ C+H+ M+  G ++F +MS  Y + P
Sbjct: 376 FAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITP 435

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL   G+ +EA++ I          D  +W +LL AC+++  +E+G    
Sbjct: 436 KLEHYGCMIDLLGHCGLFKEAKEMIRTMP---MEPDGVIWCSLLKACKMHNNVELGESYA 492

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           + L ++   +  ++VL  NIY  AG WD  A K+R L+++ G+KK PGCS IE++ VV E
Sbjct: 493 QNLIKIEPENPGSYVLLSNIYATAGRWDQVA-KIRTLLNDKGIKKAPGCSSIEIDSVVHE 551

Query: 418 FLAGDNRHAQAGEIYR 433
           F+ GD  H +  EIYR
Sbjct: 552 FIIGDKFHPRNREIYR 567



 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 207/368 (56%), Gaps = 8/368 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+   +    ++  Y+ M+ +G  PN+Y+FP L+K+C     L   G  +H HV+K 
Sbjct: 36  MFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSKALIE-GQQIHGHVLKL 94

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D +V +SL+  Y+   ++  A  +FD+S  R VV++T ++ GY   G   NAR+LF
Sbjct: 95  GYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLF 154

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++  ++ VSW+A+++ Y    +FKE L L++ M +  +KP+ES +V+V++ACA  G+I 
Sbjct: 155 DEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIE 214

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +HS+ + +    N+ +   ++D+YSKCG V +A  +F+G++ KD  +WN +I G  
Sbjct: 215 LGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHT 274

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T ++VL  C H   +  G  ++++ N   + GV  
Sbjct: 275 HMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIN-KRLKGVTN 333

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
                  ++D+ A+ G +E A++  +  +        + W A++    ++GK      ++
Sbjct: 334 ASSLLTSLIDMYAKCGDIEAAKQVFDSML----TRSLSSWNAMIFGFAMHGKANAAFDLF 389

Query: 359 RKLAEMGI 366
            K+ + GI
Sbjct: 390 SKMRKNGI 397



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 118/258 (45%), Gaps = 36/258 (13%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +FE + E N + W+ +   ++  SD    L L+  M  +G+ PN      +L +CA 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC------------------------ 211
             A+ +G  +H +  +   + ++ + T+++ MY++                         
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 212 -------GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
                  G++++A  +F+ IS KD  +WNAMISG     + K++LEL+  M+K+  +P E
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           +T V V++ C  +  +  G  L   +   +G    ++    ++DL ++ G VE A    +
Sbjct: 198 STMVTVVSACAQSGSIELGRQLHSWIED-HGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 325 EKMGGLGGGDANVWGALL 342
               GL   D   W  L+
Sbjct: 257 ----GLAKKDVISWNTLI 270


>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
 gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
          Length = 608

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 155/425 (36%), Positives = 245/425 (57%), Gaps = 13/425 (3%)

Query: 22  LDMGFEPNNYTFPPLIKACVILG---PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
           L  G   + +T   +  AC  +G   PL      +H  VV  G      + +++L  YS 
Sbjct: 164 LGPGLAMDRFTVVSVATACAGIGAARPLRE----MHGAVVVSGMEFTVIMANAMLNAYSK 219

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
             ++  AR LFD+   RD VTWT+M+ GY ++     A ++F+ MP+++ ++W+A+++ +
Sbjct: 220 ARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGH 279

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-- 196
            +  +    L LF QM   G+ P    LVS L ACA LG +T+G  +H +  R ++    
Sbjct: 280 EQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVP 339

Query: 197 -NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            N+ +  A+VDMYSKCG + +A++VF+ +  +D  +WN+M++G + NG  K+SL +F+ M
Sbjct: 340 FNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEM 399

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           + +G +PT  TF+AVLT C+H+ +V +G  + E+M   +GVEP+ EHYA  +D L R   
Sbjct: 400 LVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESMED-HGVEPRAEHYAAFIDALGRNHQ 458

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           +EEA +FI++    +G G A  WGALL ACR++G IE+   V   L  +   +   +V+ 
Sbjct: 459 LEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMM 518

Query: 376 YNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
            NIY  AG WD +A +VR L+ E G+KK    S IEV      F+A D  H +A +IY +
Sbjct: 519 SNIYAAAGQWD-DARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVADDISHCEADKIYEM 577

Query: 435 IHSFL 439
           +   L
Sbjct: 578 LGKLL 582



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 39/291 (13%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           PL++  + +G + + G  VHAH+VK        + + L+  YS +     A   F   P 
Sbjct: 36  PLLERAISMGDVLHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPH 95

Query: 95  RDVVTWTTMVDGYGKMGD-FENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLF 151
           ++  ++ T++    +  D   +A  LF+ MP   RN VS++ +M++ +      E L + 
Sbjct: 96  KNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVV 155

Query: 152 RQMQE-----VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            ++        G+  +   +VSV TACA +GA      +H       +E  VI+A A+++
Sbjct: 156 ARLARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLN 215

Query: 207 MYSKCGHV-------------------------------HSALSVFEGISNKDAGAWNAM 235
            YSK   V                               H A+ VF+ + +KD  AW A+
Sbjct: 216 AYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTAL 275

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           ISG   NG+   +LELF++M+  G  PT    V+ L  C    +V  G  L
Sbjct: 276 ISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKEL 326


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  277 bits (709), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 243/441 (55%), Gaps = 43/441 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG----FEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           +IRG      P+ +V  Y  ML  G      P+  TFP +++AC  +G  +  G+ VHAH
Sbjct: 49  LIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDT-GVQVHAH 107

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMG-------------------------------TA 85
           VVK G   D FV ++L+  ++    +G                                A
Sbjct: 108 VVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRGDIGAA 167

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P +D+V+W  M+  Y K GD   ARELF+++PER+ VSW+ +++ Y R     
Sbjct: 168 RDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHL 227

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILAT 202
             L LF QMQ +G KP+   ++S+L+ACA  G +  G  +HS        +N   V+L  
Sbjct: 228 HALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDM-FSRNGFPVVLGN 286

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++DMY+KCG + SA  VF  + +KD   WN+++ G+A++G   +S+++F++M+K   +P
Sbjct: 287 ALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E TFVAVL  C+H  MV  G   F  M   Y VEP ++HY C+VD+L RAG+++EA +F
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEF 406

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I+         ++ +W  LLSACR++G+IE+     R+L +    +   +VL  NIY   
Sbjct: 407 IDTMK---CEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASV 463

Query: 383 GWDMEANKVRKLISETGMKKK 403
           G    + K+RKL+ ++G+ K+
Sbjct: 464 GEWFGSEKMRKLMDDSGVNKE 484



 Score = 38.5 bits (88), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 67/169 (39%), Gaps = 9/169 (5%)

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV----KSGTQPTETTF 267
           G +  A  VF+ I   D   +N +I G A     + ++ L+ RM+      G +P + TF
Sbjct: 26  GAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTF 85

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
             VL  CT       G+ +  ++    G E        ++ + A  G +  A    +   
Sbjct: 86  PFVLRACTAMGAGDTGVQVHAHVVKA-GCESDAFVKNALIGMHASCGNLGIAAALFD--- 141

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            G    DA  W A+++ C   G I     ++ +     +  ++  + +Y
Sbjct: 142 -GRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAY 189


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 251/432 (58%), Gaps = 5/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M   Y++    + ++  +  M+D G  P+  +    I +C  L  +  +G   H +V++ 
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNIL-WGKSCHGYVLRN 366

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF     + ++L++ Y   H+  TA  +FD+  ++ VVTW ++V GY + G+ + A E F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           E MPE+N VSW+ I++   + S F+E + +F  MQ + G+  +   ++S+ +AC HLGA+
Sbjct: 427 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 486

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
               W++ Y ++  ++ +V L T +VDM+S+CG   SA+S+F  ++N+D  AW A I  +
Sbjct: 487 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 546

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM G+A++++ELFD M++ G +P    FV  LT C+H  +V+ G  +F +M  ++GV P+
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 606

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
             HY C+VDLL RAG++EEA + IE+    +   D  +W +LL+ACR+ G +E+      
Sbjct: 607 DVHYGCMVDLLGRAGLLEEAVQLIEDM--PMEPNDV-IWNSLLAACRVQGNVEMAAYAAE 663

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           K+  +      ++VL  N+Y  AG   +  KVR  + E G++K PG S I++ G   EF 
Sbjct: 664 KIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFT 723

Query: 420 AGDNRHAQAGEI 431
           +GD  H +   I
Sbjct: 724 SGDESHPEMPNI 735



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 154/302 (50%), Gaps = 44/302 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  +     ++  +L M++ G  P+ YTFP  + AC       N G+ +H  +VK 
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGN-GIQIHGLIVKM 163

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+ +D FV +SL+ FY+                               + G+ ++AR++F
Sbjct: 164 GYAKDLFVQNSLVHFYA-------------------------------ECGELDSARKVF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAI 179
           ++M ERN VSW++++  Y+R    K+ + LF R +++  + PN   +V V++ACA L  +
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  V+++ +   +E N ++ +A+VDMY KC  +  A  +F+     +    NAM S  
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFE 288
              G  +++L +F+ M+ SG +P   + ++ +++C+           H  ++R+G   ++
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372

Query: 289 NM 290
           N+
Sbjct: 373 NI 374



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 37/297 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY + +F K +V  +  M+ D    PN+ T   +I AC  L  LE  G  V+A +  
Sbjct: 206 MICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET-GEKVYAFIRN 264

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   +  +VS+L                               VD Y K    + A+ L
Sbjct: 265 SGIEVNDLMVSAL-------------------------------VDMYMKCNAIDVAKRL 293

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++    N    +A+ + Y R    +E L +F  M + G++P+   ++S +++C+ L  I
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNI 353

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G   H Y  R   E    +  A++DMY KC    +A  +F+ +SNK    WN++++G 
Sbjct: 354 LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
             NG+   + E F+ M +        ++  +++      +  + + +F +M +  GV
Sbjct: 414 VENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 6/245 (2%)

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFEN---ARELFEKMPERNAV-SWSAIMAAYSRI 141
           R+L  +  D DV T T +V    ++G  E+   A+E+FE          +++++  Y+  
Sbjct: 53  RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
               E + LF +M   G+ P++      L+ACA   A   G+ +H    +    K++ + 
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQ 172

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GT 260
            ++V  Y++CG + SA  VF+ +S ++  +W +MI G A    AK +++LF RMV+    
Sbjct: 173 NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEV 232

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P   T V V++ C   + +  G  ++  +    G+E      + +VD+  +   ++ A+
Sbjct: 233 TPNSVTMVCVISACAKLEDLETGEKVYAFIRN-SGIEVNDLMVSALVDMYMKCNAIDVAK 291

Query: 321 KFIEE 325
           +  +E
Sbjct: 292 RLFDE 296


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 161/446 (36%), Positives = 243/446 (54%), Gaps = 50/446 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y  ++ P  S+  +L ML    + P+ +TFP LIKA   L  L   G   H  V+K
Sbjct: 106 LIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT-GKAFHGMVIK 164

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              G D F+++SL+ FY+   ++G                      GY           +
Sbjct: 165 VLLGSDVFILNSLIHFYAKCGELGL---------------------GY----------RV 193

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F   P R+ VSW++++ A+ +    +E L LF++M+   +KPN   +V VL+ACA     
Sbjct: 194 FVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDF 253

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI--- 236
             G WVHSY +R  + +++ L+ A++DMY+KCG V  A  +F+ +  KD  +W  M+   
Sbjct: 254 EFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGY 313

Query: 237 ---------SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
                     G+AM+G  K ++ LF +M +   +P   TF  +L  C+H  +V +G   F
Sbjct: 314 AKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF 373

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
             M  VYGV P ++HYAC+VD+L RAG++EEA + I EKM       A+VWGALL AC I
Sbjct: 374 NQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELI-EKMPMAPA--ASVWGALLGACTI 430

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGC 406
           +  + +  +   +L E+   +   +VL  NIY +AG WD   + +RKL+ + G+KK+PGC
Sbjct: 431 HENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWD-RVSGLRKLMRDVGLKKEPGC 489

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIY 432
           S IEV+G+V EFL GDN H  A +IY
Sbjct: 490 SSIEVDGIVHEFLVGDNSHPSAKKIY 515



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 113/275 (41%), Gaps = 33/275 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSL--VHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HA +++ G   DPF  S L+   +L     +  A+ +FD+ P  ++ TW T++  Y   
Sbjct: 54  IHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASS 113

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
            +   +  +F +M  ++               DF                P++     ++
Sbjct: 114 SNPHQSLLIFLRMLHQSP--------------DF----------------PDKFTFPFLI 143

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            A + L  +  G   H    +  L  +V +  +++  Y+KCG +     VF     +D  
Sbjct: 144 KAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVV 203

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN+MI+     G  +++LELF  M     +P   T V VL+ C        G  +   +
Sbjct: 204 SWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYI 263

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
                +   L     ++D+  + G VE+A++  ++
Sbjct: 264 ER-NRIXESLTLSNAMLDMYTKCGSVEDAKRLFDK 297


>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
 gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
 gi|223946951|gb|ACN27559.1| unknown [Zea mays]
          Length = 616

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 155/425 (36%), Positives = 245/425 (57%), Gaps = 13/425 (3%)

Query: 22  LDMGFEPNNYTFPPLIKACVILG---PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
           L  G   + +T   +  AC  +G   PL      +H  VV  G      + +++L  YS 
Sbjct: 172 LGPGLAMDRFTVVSVATACAGIGAARPLRE----MHGAVVVSGMEFTVIMANAMLNAYSK 227

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
             ++  AR LFD+   RD VTWT+M+ GY ++     A ++F+ MP+++ ++W+A+++ +
Sbjct: 228 ARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTALISGH 287

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-- 196
            +  +    L LF QM   G+ P    LVS L ACA LG +T+G  +H +  R ++    
Sbjct: 288 EQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVP 347

Query: 197 -NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            N+ +  A+VDMYSKCG + +A++VF+ +  +D  +WN+M++G + NG  K+SL +F+ M
Sbjct: 348 FNIFIHNALVDMYSKCGDMMAAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEM 407

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           + +G +PT  TF+AVLT C+H+ +V +G  + E+M   +GVEP+ EHYA  +D L R   
Sbjct: 408 LVAGVRPTHVTFLAVLTACSHSGLVSNGRLVLESMED-HGVEPRAEHYAAFIDALGRNHQ 466

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           +EEA +FI++    +G G A  WGALL ACR++G IE+   V   L  +   +   +V+ 
Sbjct: 467 LEEATEFIKDLPSRIGPGTAGSWGALLGACRLHGNIELAEEVAEFLFRLEPGNSGRYVMM 526

Query: 376 YNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
            NIY  AG WD +A +VR L+ E G+KK    S IEV      F+A D  H +A +IY +
Sbjct: 527 SNIYAAAGQWD-DARRVRGLMKEKGLKKDQAYSWIEVRSAKHVFVADDISHCEADKIYEM 585

Query: 435 IHSFL 439
           +   L
Sbjct: 586 LGKLL 590



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 129/291 (44%), Gaps = 39/291 (13%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           PL++  + +G + + G  VHAH+VK        + + L+  YS +     A   F   P 
Sbjct: 44  PLLERAISMGDVLHLGRAVHAHLVKTALTSHTLLSNRLVALYSSLPSPAAAVKAFYDLPH 103

Query: 95  RDVVTWTTMVDGYGKMGD-FENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLF 151
           ++  ++ T++    +  D   +A  LF+ MP   RN VS++ +M++ +      E L + 
Sbjct: 104 KNAHSYNTLLAALLRRPDTLPDAFRLFDTMPADSRNLVSYNTLMSSLAHHGRQVEALRVV 163

Query: 152 RQMQE-----VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            ++        G+  +   +VSV TACA +GA      +H       +E  VI+A A+++
Sbjct: 164 ARLARDRFLGPGLAMDRFTVVSVATACAGIGAARPLREMHGAVVVSGMEFTVIMANAMLN 223

Query: 207 MYSKCGHV-------------------------------HSALSVFEGISNKDAGAWNAM 235
            YSK   V                               H A+ VF+ + +KD  AW A+
Sbjct: 224 AYSKARRVEDARHLFDQVSIRDNVTWTSMISGYCQVKKLHEAVQVFDMMPDKDRIAWTAL 283

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           ISG   NG+   +LELF++M+  G  PT    V+ L  C    +V  G  L
Sbjct: 284 ISGHEQNGEEDTALELFEQMLAKGVSPTPFVLVSALGACAKLGLVTRGKEL 334


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  277 bits (708), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 156/443 (35%), Positives = 248/443 (55%), Gaps = 45/443 (10%)

Query: 1   MIRGYMQANFP----KLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           +IR ++ + FP    + + F  L ML     PN +TFP L+K+C  L    + G+  HA 
Sbjct: 103 LIRTHVTSPFPSARRRAAAFFPL-MLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAA 161

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
            +KFGF  D +V ++L+  YS                            G G +GD   A
Sbjct: 162 ALKFGFAADHYVSNTLIHMYSCF--------------------------GAGFLGD---A 192

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R +FE+MP  +AV+WSA++  Y R     + + LFR MQ  G++P+E  ++ VL A A L
Sbjct: 193 RNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADL 252

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+    WV  + +R  + K+V L  A++D  +KCG V  A++VFEG+  +   +W ++I
Sbjct: 253 GALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVI 312

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
             +AM G  K+++ +F+ M   G  P +  F+ VLT C+HA MV +G   F++M   YG+
Sbjct: 313 DALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGI 372

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           EP++EHY C+VD+  RAGMVE+  +F+          +  +W  L++ACR +G++E+G  
Sbjct: 373 EPKIEHYGCMVDMFGRAGMVEQGLEFVRAMP---MKPNPIIWRTLVAACRAHGRLELGES 429

Query: 357 VWRKLAEMGITDFSTHVLSY----NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
           + R L    + +F  H  +Y    N+Y       E +++R+ +S+ G+KK PGCS++E++
Sbjct: 430 ITRNL----LNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELD 485

Query: 413 GVVEEFLAGDNRHAQAGEIYRVI 435
           G V EF+AGD  H Q  EIYR++
Sbjct: 486 GEVHEFIAGDESHPQYKEIYRMV 508


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  277 bits (708), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 153/431 (35%), Positives = 241/431 (55%), Gaps = 39/431 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  ++ P++++  + +ML     P+ Y+F  ++KAC      E  G  +H   +K 
Sbjct: 111 VIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEE-GRQIHGLFIKS 169

Query: 61  GFGEDPFVVSSLLEFY----------SLVHKMGT---------------------ARALF 89
           G   D FV ++L+  Y           ++ +M                       ARALF
Sbjct: 170 GLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALF 229

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
           D+  +R+V +W  M+ GY   G  + A+E+F+ MP R+ VSW+A++ AY+ +  + EVL 
Sbjct: 230 DEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLE 289

Query: 150 LFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           +F +M  +   KP+   LVSVL+ACA LG+++QG WVH Y  ++ +E    LATA+VDMY
Sbjct: 290 VFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMY 349

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           SKCG +  AL VF   S +D   WN++IS ++++G  K +LE+F  MV  G +P   TF+
Sbjct: 350 SKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFI 409

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            VL+ C H  M+     LFE MS+VY VEP +EHY C+VDLL R G +EEAE+ + E   
Sbjct: 410 GVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNE--- 466

Query: 329 GLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
            +   +A++   +LL AC+ +G++E   R+  +L E+ + D S +    N+Y   G W+ 
Sbjct: 467 -IPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEK 525

Query: 387 EANKVRKLISE 397
             +  R + +E
Sbjct: 526 VIDGRRNMRAE 536



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 105/237 (44%), Gaps = 32/237 (13%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA ++K G   D F  S L+ F +              +P+   V++             
Sbjct: 59  HAFMLKTGLFHDTFSASKLVAFAA-------------TNPEPKTVSY------------- 92

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A  +  ++   N  + ++++ AY+  S  +  L++FR+M    + P++     VL AC
Sbjct: 93  --AHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKAC 150

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A      +G  +H    +  L  +V +   +V++Y + G+   A  V + +  +DA +WN
Sbjct: 151 AAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWN 210

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +++S     G   ++  LFD M +   +    ++  +++    A +V++   +F++M
Sbjct: 211 SLLSAYLEKGLVDEARALFDEMEERNVE----SWNFMISGYAAAGLVKEAKEVFDSM 263


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/431 (36%), Positives = 236/431 (54%), Gaps = 35/431 (8%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I GY+     + ++  +  +L+MG  P++++   ++ AC   G L + G ++  ++ + G
Sbjct: 181 ISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRS-GEWIDEYITENG 239

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
              + FV ++L++F                               YGK G+ E AR +F+
Sbjct: 240 MVRNVFVATALVDF-------------------------------YGKCGNMERARSVFD 268

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            M E+N VSWS+++  Y+     KE L LF +M   G+KP+   +V VL +CA LGA+  
Sbjct: 269 GMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALEL 328

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G W  +         N +L TA++DMY+KCG +  A  VF G+  KD   WNA ISG+AM
Sbjct: 329 GDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAM 388

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G  K +L LF +M KSG +P   TFV +L  CTHA +V +G   F +M  V+ + P++E
Sbjct: 389 SGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIE 448

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+VDLL RAG ++EA + I+         +A VWGALL  CR++   ++   V +KL
Sbjct: 449 HYGCMVDLLGRAGCLDEAHQLIKSMP---MEANAIVWGALLGGCRLHRDTQLVEVVLKKL 505

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
             +       +VL  NIY  +    EA K+R ++SE G+KK PG S IEV+GVV +FL G
Sbjct: 506 IALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQFLVG 565

Query: 422 DNRHAQAGEIY 432
           D  H  + +IY
Sbjct: 566 DTSHPLSEKIY 576



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 186/375 (49%), Gaps = 55/375 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG +  +  + S+  Y  M   G  P+++TFP ++KAC  +   E  G+ +H+ VVK 
Sbjct: 79  MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSE-LGVKMHSLVVKA 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV  SL+  Y+                               K G  +NA ++F
Sbjct: 138 GCEADAFVKISLINLYT-------------------------------KCGFIDNAFKVF 166

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +P++N  SW+A ++ Y  +   +E + +FR++ E+G++P+   LV VL+AC   G + 
Sbjct: 167 DDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLR 226

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+  Y     + +NV +ATA+VD Y KCG++  A SVF+G+  K+  +W++MI G A
Sbjct: 227 SGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYA 286

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH---------AKMVRDGLNLFENMS 291
            NG  K++L+LF +M+  G +P     V VL +C           A  + +G    +N  
Sbjct: 287 SNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDN-- 344

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
           +V G          ++D+ A+ G ++ A     E   G+   D  VW A +S   + G +
Sbjct: 345 SVLGTA--------LIDMYAKCGRMDRA----WEVFRGMRKKDRVVWNAAISGLAMSGHV 392

Query: 352 EVGNRVWRKLAEMGI 366
           +    ++ ++ + GI
Sbjct: 393 KDALGLFGQMEKSGI 407



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 126/273 (46%), Gaps = 34/273 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA +++ G  ED ++++ +L F         +  + D++ + ++  + TM+ G      
Sbjct: 29  IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGL----- 83

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISD-FKEVLSLFRQMQEVGMKPNESGLVSVLT 171
                                       ++D F+E + ++  M++ G+ P+      VL 
Sbjct: 84  ---------------------------VLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLK 116

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA +     G+ +HS   +   E +  +  +++++Y+KCG + +A  VF+ I +K+  +
Sbjct: 117 ACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFAS 176

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           W A ISG    G  ++++++F R+++ G +P   + V VL+ C     +R G  + E ++
Sbjct: 177 WTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYIT 236

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
              G+   +     +VD   + G +E A    +
Sbjct: 237 E-NGMVRNVFVATALVDFYGKCGNMERARSVFD 268


>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
          Length = 485

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 244/413 (59%), Gaps = 8/413 (1%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKMG 83
           G EPN+ T   L+  C    P   FG  +H +  K G   +  +V +++L  YS   +  
Sbjct: 59  GVEPNHITLIALLSGCADCEP---FGDSLHGYACKLGLDRNQVMVGTAILGMYSKRRRFR 115

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
            AR +FD+  D++ VTW TM+DGY + G  ++A ++F++MPER+ +SW+A++  + +   
Sbjct: 116 KARLVFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGL 175

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            +E L+ FR+MQ  G+KP+   +++ L ACA+LGA++ GLWVH +      + NV ++ +
Sbjct: 176 HEEALAWFREMQVSGVKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNS 235

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++D+Y +CG V  A  VF+ +  +   +WN++I G A NG A +SL  F RM +   +P 
Sbjct: 236 LIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPD 295

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TF   LT C+H  +V +G+  FE M   Y + P++EHY C+VDL +RAG +EEA K +
Sbjct: 296 AVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVV 355

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGK-IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           E         +  V G+LL+ACR +G   E+  R+ ++L+E+ +   S +V+  N+Y   
Sbjct: 356 ESMP---MKPNEVVIGSLLAACRTHGNDTELAERMMKRLSELKVKGHSNYVILSNMYAAD 412

Query: 383 GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           G    A+K+R+ +   G+KK+PG S IE++     F+AGD+ H + G I  V+
Sbjct: 413 GQWEGASKMRRKMKGLGLKKQPGFSSIEIDDRTHVFMAGDSAHVENGYIREVL 465



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 8/172 (4%)

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
            VSW++ +   SR     E    F  M+  G++PN   L+++L+ CA        L  H 
Sbjct: 29  TVSWTSRITLLSRNGRLAEAAKEFTAMRLAGVEPNHITLIALLSGCADCEPFGDSL--HG 86

Query: 188 YAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
           YA +  L++N V++ TA++ MYSK      A  VF+ + +K++  WN MI G   +G   
Sbjct: 87  YACKLGLDRNQVMVGTAILGMYSKRRRFRKARLVFDRVEDKNSVTWNTMIDGYMRSGRVD 146

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            + ++FD M +        ++ A++       +  + L  F  M  V GV+P
Sbjct: 147 DAAKVFDEMPERDL----ISWTAMINGFVKKGLHEEALAWFREMQ-VSGVKP 193


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 243/434 (55%), Gaps = 37/434 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++    K ++  + +M+     P+  T   +I A    G +E  G  VH+ +   
Sbjct: 166 MISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIE-LGRQVHSWIADH 224

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L++FYS                               K G+ E A  LF
Sbjct: 225 GFGSNLKIVNALIDFYS-------------------------------KCGEMETACGLF 253

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACAHLGAI 
Sbjct: 254 LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAID 313

Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMYSKCG + +A  VF  + +K   AWNAMI G
Sbjct: 314 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFG 373

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  + ++F RM K+  +P + TFV +L+ C+HA M+  G ++F +M+  Y + P
Sbjct: 374 FAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITP 433

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC+++G +E+G +  
Sbjct: 434 KLEHYGCMIDLLGHSGLFKEAEEMISTMT---MEPDGVIWCSLLKACKMHGNVELGEKFA 490

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           + L ++   +  ++VL  NIY  AG   E  ++R L+++ GMKK PGCS IE++ VV EF
Sbjct: 491 QNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEF 550

Query: 419 LAGDNRHAQAGEIY 432
           + GD  H +  EIY
Sbjct: 551 IIGDKFHPRNREIY 564



 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 211/395 (53%), Gaps = 35/395 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  +  P  ++  Y+ M+ +G  PN+YTFP L+K+C  L   +  G+ +H HV+K 
Sbjct: 34  MFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKLKASKE-GLQIHGHVLKL 92

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D +V +SL+  Y    ++  A  +FD+S  RDVV++T +V GY   G  E+AR +F
Sbjct: 93  GYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMF 152

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y    ++KE L LF++M +  ++P+ES +V+V++A A  G+I 
Sbjct: 153 DEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIE 212

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D YSKCG + +A  +F G+S KD  +WN +I G  
Sbjct: 213 LGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYT 272

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T +++L  C H   +  G  ++++ +   + GV  
Sbjct: 273 HLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYID-KRLKGVTN 331

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKM-GGLGGGDANVWG------------------ 339
                  ++D+ ++ G +E A +     +   L   +A ++G                  
Sbjct: 332 ASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMR 391

Query: 340 ------------ALLSACRIYGKIEVGNRVWRKLA 362
                        LLSAC   G +++G  ++R + 
Sbjct: 392 KNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMT 426



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 32/235 (13%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +FE + E N + W+ +   ++   D    L L+  M  +G+ PN      +L +CA 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 176 LGAITQGLWVHS--------------------YAKRYHLE-----------KNVILATAV 204
           L A  +GL +H                     Y +   LE           ++V+  TA+
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           V  Y+  G++ SA ++F+ I  KD  +WNAMISG    G+ K++LELF  M+K+  +P E
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           +T V V++    +  +  G  +  +  A +G    L+    ++D  ++ G +E A
Sbjct: 196 STMVTVISASARSGSIELGRQV-HSWIADHGFGSNLKIVNALIDFYSKCGEMETA 249


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/436 (33%), Positives = 244/436 (55%), Gaps = 6/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G  QA     +   + +M   G   + +TF  L+  C   G LE  G  VH H++  
Sbjct: 180 MIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLE-VGRLVHCHMLAS 238

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + ++L++ Y     +  A   FD  P ++VV+WT+M+    K G  + AR+ F
Sbjct: 239 GSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWF 298

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+MPERN +SW+A+++ Y +   F E L L+ +M+ +G+ P+E  L  VL+     G + 
Sbjct: 299 EQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLA 358

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y +    +  V +  +++DMY++CG V +++S+F  + NK+  +WN +I  +A
Sbjct: 359 SGRMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALA 418

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A++++  F  MV     P E TFV +L+ C+H  ++ DG   F+ M  +Y V+P++
Sbjct: 419 MHGRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEV 478

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G + +A   I++        D  VWGAL+ ACRI+G +E+G    ++
Sbjct: 479 EHYACMVDLLGRHGHLAKAVDLIKDMP---MKPDVVVWGALIGACRIHGHVEIGKLAIKQ 535

Query: 361 LAEM-GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+ GI      ++S  +Y+   W+ +  ++RKL+ + G KK  G S IE+N  + EF 
Sbjct: 536 LLELEGINGGLFVLISNLLYETRQWE-DMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFG 594

Query: 420 AGDNRHAQAGEIYRVI 435
             D RH  + +IY  +
Sbjct: 595 VEDIRHESSSQIYAAV 610



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 158/384 (41%), Gaps = 69/384 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  +  P+ ++  + D+L  G  PN +T P ++KAC      E+  +  H   +K 
Sbjct: 78  LIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARAAEH-ALATHGVAIKL 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    FV ++LL      H   +A                         G   ++R LF
Sbjct: 137 GYVRQVFVGNALL------HSSASA-------------------------GSLRDSRRLF 165

Query: 121 EKM-PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            +M P RN VSW+ ++   ++  +  E  +LFR+M+  G+  +    VS+L  C+  G +
Sbjct: 166 AEMAPHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNL 225

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKC---------------------------- 211
             G  VH +        ++IL  A+VDMY KC                            
Sbjct: 226 EVGRLVHCHMLASGSRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCAL 285

Query: 212 ---GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
              G V +A   FE +  ++  +WNAMIS     G   ++L L++RM   G  P E T  
Sbjct: 286 AKHGSVDAARDWFEQMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLA 345

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            VL+       +  G  +   +   +  +P +     ++D+ AR G V+ +     E   
Sbjct: 346 GVLSVHGQNGDLASGRMIHCYIQDSFS-DPGVTVLNSLIDMYARCGQVDTSISLFTE--- 401

Query: 329 GLGGGDANVWGALLSACRIYGKIE 352
            +   +   W  ++ A  ++G+ +
Sbjct: 402 -MPNKNTISWNVIIGALAMHGRAQ 424



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 124/272 (45%), Gaps = 8/272 (2%)

Query: 108 GKMGDFE--NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
           G+ GD    +AR +F+++P+ +  ++++++ AYS     +E L L R +   G+ PNE  
Sbjct: 50  GRAGDVALCHARRMFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFT 109

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF-EGI 224
           L  VL AC+   A    L  H  A +    + V +  A++   +  G +  +  +F E  
Sbjct: 110 LPFVLKACSRARAAEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDSRRLFAEMA 169

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
            +++  +WN MI G A  G+  ++  LF  M + G      TFV++L  C+    +  G 
Sbjct: 170 PHRNVVSWNTMIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGR 229

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +  +M A  G    L     +VD+  + G +  A +  +     +   +   W ++L A
Sbjct: 230 LVHCHMLA-SGSRVDLILGNALVDMYGKCGDLWMAHRCFDV----MPIKNVVSWTSMLCA 284

Query: 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
              +G ++     + ++ E  I  ++  +  Y
Sbjct: 285 LAKHGSVDAARDWFEQMPERNIISWNAMISCY 316


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 243/477 (50%), Gaps = 41/477 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+   F    V  +  M      P++YTFP ++KAC   G +   G  +H    K 
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV-IGRKIHGSATKV 169

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
           G     FV + L+  Y     +  AR + D+   RDVV+W ++V GY +   F++A    
Sbjct: 170 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC 229

Query: 117 ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
                                            +++F KM +++ VSW+ ++  Y + + 
Sbjct: 230 REMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAM 289

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             E + L+ +M+  G +P+   + SVL AC    A++ G  +H Y +R  L  N++L  A
Sbjct: 290 PVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A  VFE + ++D  +W AMIS    +G    ++ LF ++  SG  P 
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPD 409

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV  L  C+HA ++ +G + F+ M+  Y + P+LEH AC+VDLL RAG V+EA +FI
Sbjct: 410 SIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI 469

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           ++        +  VWGALL ACR++   ++G     KL ++       +VL  NIY +AG
Sbjct: 470 QDMS---MEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
              E   +R ++   G+KK PG S +EVN ++  FL GD  H Q+ EIYR +   +K
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVK 583



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++  Y  + D  +AR++F+++PERN +  + ++ +Y     + E + +F  M    ++P+
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
                 VL AC+  G I  G  +H  A +  L   + +   +V MY KCG +  A  V +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +S +D  +WN+++ G A N     +LE+   M
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VHS      L  N  L   ++  Y+    V SA  VF+ I  ++    N MI     NG 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
             + +++F  M     +P   TF  VL  C+ +  +  G  +  + + V G+   L    
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGN 179

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            +V +  + G + EA   ++E    +   D   W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDE----MSRRDVVSWNSLV 213


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/332 (41%), Positives = 207/332 (62%), Gaps = 3/332 (0%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++D Y K GD E A  +F+ +  +N  SW+AI+    +    +E + L+R M+   +K
Sbjct: 267 TALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVK 326

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           PNE  LV+VL+ACA LGA+  G  VH Y  R  L+ NVILATA+VDMY+KCG +  A  +
Sbjct: 327 PNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLI 386

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F   S KD   WNAMI G+A +GD + SL +F +MV++G QP + TF+ VL+ C H+ +V
Sbjct: 387 FVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLV 446

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
            +G   F +M+  +G+ P+LEHYAC+VDLL RAG ++EA + ++     L   D+ +WGA
Sbjct: 447 EEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNM---LIPPDSIIWGA 503

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
           LLSACRI+  +E+ +++   +      +    +L  NIY  +G   +  +VR+ + E  +
Sbjct: 504 LLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDVARVRRQVKEKRI 563

Query: 401 KKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           KK  GCS +EV+GVV  F+  D  H ++GEIY
Sbjct: 564 KKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIY 595



 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 118/333 (35%), Positives = 188/333 (56%), Gaps = 27/333 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y     P+ S+F YL ML    +P+N+TFP ++KAC  LG +   G  +H HV++ 
Sbjct: 64  LIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLE-GEQIHTHVLRL 122

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D FV +SL++ Y    ++ +AR  +D    RD V+W +++ GY + G  E AR+LF
Sbjct: 123 GFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLF 182

Query: 121 EKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG--MKPNESGLVSVLTACAHLG 177
           E+MP  RN V W+A++  Y +  DF E+LSLFRQM      ++PN + +V +L+AC+ L 
Sbjct: 183 EEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLC 242

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
               G ++  +     +  N IL TA++DMYSKCG V  A  +F+G+S K+  +WNA+I+
Sbjct: 243 NYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIIT 302

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNL 286
           G    G  +++++L+  M     +P E T V VL+ C            H  + R+GL+L
Sbjct: 303 GCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDL 362

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
              ++              +VD+ A+ G +++A
Sbjct: 363 NVILATA------------LVDMYAKCGKIDDA 383



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 125/277 (45%), Gaps = 40/277 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G +Q    + ++  Y  M     +PN  T   ++ AC  LG LE  G  VH ++ + 
Sbjct: 300 IITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALE-LGREVHLYLGRN 358

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                D +V+  T +VD Y K G  ++A  +F
Sbjct: 359 GL-------------------------------DLNVILATALVDMYAKCGKIDDACLIF 387

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            K  E++   W+A++   +   D ++ L++F QM   G++PN+   + VL+AC H G + 
Sbjct: 388 VKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVE 447

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAMISG 238
           +G +   S A ++ L   +     +VD+  + GH+  A  + +  +   D+  W A++S 
Sbjct: 448 EGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSA 507

Query: 239 VAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTT 273
             ++    ++LEL D++ ++   +Q     F  +L+ 
Sbjct: 508 CRIH----RNLELADKISETIMASQDPNIGFCILLSN 540



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/302 (21%), Positives = 131/302 (43%), Gaps = 43/302 (14%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++     +   + AR + ++ P     SW++++ AY+     +  L L+ +M     K
Sbjct: 31  THLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTK 90

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+      VL AC+ LG++ +G  +H++  R     ++ +  +++DMY KC  + SA + 
Sbjct: 91  PSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNF 150

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV----------------KSG----- 259
           ++ +  +D  +WN++ISG    G  +K+ +LF+ M                 K G     
Sbjct: 151 WDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEM 210

Query: 260 -------------TQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYA 304
                         QP   T V +L+ C+       G  L++F +   V  +        
Sbjct: 211 LSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFID---VNKIPLNTILVT 267

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            ++D+ ++ G VE+A +  +    G+   +   W A+++ C   G +E    ++R +   
Sbjct: 268 ALIDMYSKCGDVEKAWRIFD----GVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQ 323

Query: 365 GI 366
            +
Sbjct: 324 SV 325



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 87/187 (46%), Gaps = 12/187 (6%)

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           L+S+L     L  I Q   +H+    + L     L   ++D++S    +  A  V +   
Sbjct: 2   LLSLLRTATSLTQIHQ---IHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTP 54

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
           +    +WN++I    ++G  + SL L+ +M++S T+P+  TF  VL  C+    V +G  
Sbjct: 55  SPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQ 114

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
           +  ++  + G    L     ++D+  +   ++ A  F ++    +G  D   W +++S  
Sbjct: 115 IHTHVLRL-GFGSDLFVCNSLIDMYCKCFRLDSARNFWDD----MGFRDEVSWNSIISGY 169

Query: 346 RIYGKIE 352
             +G++E
Sbjct: 170 VQWGQVE 176


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 64  EDPFVVSSLLEFY-SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
            D F  +++++ Y  +   +  AR LFD+ PDRD+V W +M+DGY + G  + AR LFE+
Sbjct: 210 RDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEE 269

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MPERN +SWS ++  Y R  +  E L  F++M   G+KP+    V  + ACA LGA+ QG
Sbjct: 270 MPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQG 329

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            W+HSY ++  +  +V++ TA++DMY KCG +  A  +FE +  K    WN MI G+  +
Sbjct: 330 RWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTH 389

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G    +++LF++M        + + +AVLT+CTHA +V +GL +F  M    G+EP++EH
Sbjct: 390 GYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEH 449

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y  ++DLL RAG V++A   IE            +WG+LL++CR +  +E+      +LA
Sbjct: 450 YGALIDLLGRAGRVDQARNTIETMP---MEPTPELWGSLLASCRSHRCVELAELSVERLA 506

Query: 363 EMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            +G  D   +VL  NIY + G WD +  ++RKL+S  GMKK  G SVIEV+G + EF+ G
Sbjct: 507 SLGADDSGVYVLLSNIYADEGMWD-DVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNG 565

Query: 422 DNRHAQAGEIY 432
            + H    EIY
Sbjct: 566 GSSHPHKEEIY 576



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 33/223 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++   P  ++  +  ML  G +P+       + AC  LG LE  G ++H+++ K 
Sbjct: 281 VIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQ-GRWLHSYLEKK 339

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y    ++  A+ +F+  P + VVTW  M+ G G  G   +A    
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDA---- 395

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      + LF QM+      ++  +++VLT+C H G ++
Sbjct: 396 ---------------------------IKLFNQMETERAPMDDLSILAVLTSCTHAGLVS 428

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +GL + +   K   LE  V    A++D+  + G V  A +  E
Sbjct: 429 EGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIE 471



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 44/248 (17%)

Query: 114 ENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           ++A  +F  + E   R+A  W+ ++  ++  S  + +L  F +M+   + P+     +VL
Sbjct: 65  DHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRAAVAPDAYTFPAVL 123

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-------------------- 210
            AC        GL VH  A R  L+ ++    A++  Y +                    
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVS 183

Query: 211 ----------CGHVHSALSVFEGISNKDAGAWNAMISGVA-MNGDAKKSLELFDRMVKSG 259
                     CG V  A  +F+ +  +DA +W  MI G   M G   ++ ELFD+M    
Sbjct: 184 WNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRD 243

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
                +    +     H +M  +   LFE M      E  +  ++ V+D   R G   EA
Sbjct: 244 LVCWNSM---IDGYARHGRM-DEARVLFEEMP-----ERNVISWSIVIDGYVRFGEPNEA 294

Query: 320 EKFIEEKM 327
            +F +  +
Sbjct: 295 LEFFQRML 302


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/426 (36%), Positives = 235/426 (55%), Gaps = 39/426 (9%)

Query: 49  FGMFVHAHVVKFGFGE-DPFVVSSLLEFY--SLVHKMGTARALFDKSPDRDV-------- 97
            G  +HA  ++ GF   D FV ++L+E Y  +   ++  ARA FD++P RDV        
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 98  -----------------------VTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
                                  V+W TM+ GY   GD   ARE+F+   +R+A SWS++
Sbjct: 125 AYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSM 184

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           ++AY++    KE L L+R+M+  G+ P+   +VSVL+AC+ +GA+  G  VH + +   +
Sbjct: 185 ISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRV 244

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           E ++ L TA+VDMY+KCG + ++L VF  +  KD   W++MI G+A +G    +L LF  
Sbjct: 245 EVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSE 304

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           M+  G QP E TF+ VL  CTH  +V DG   F +MS V+GV P++EHY C+VDLL RAG
Sbjct: 305 MISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAG 364

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
            VEEA + I          D  +W  LL ACRI+  +E+      KL  +       +VL
Sbjct: 365 HVEEAMELIRSMT---FKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVL 421

Query: 375 SYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
             NIY +A  W+  A ++RK I    +++ PG S IE    V EF++GD  H +  EIY+
Sbjct: 422 LSNIYAQANSWEGVA-EMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYK 480

Query: 434 VIHSFL 439
           ++   +
Sbjct: 481 MLEEMM 486


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 245/435 (56%), Gaps = 43/435 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIRGY +++ P+ ++  Y+ M+  G   PNN+TFP L+ +C  L  LE  G  VH+H++K
Sbjct: 5   MIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEP-GHEVHSHIIK 63

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  D FV ++L+  YS+                                G+   AR L
Sbjct: 64  HGFESDLFVRNALIHLYSV-------------------------------FGNLNLARTL 92

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++   R+ VS++ ++  Y+ ++  +  L LF +MQ      +E  LV+VL+ACA LGA 
Sbjct: 93  FDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ----NSDEVTLVAVLSACARLGAF 148

Query: 180 TQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE--GISNKDAGAWNAMI 236
             G  + H Y +     +N IL  AV+DMY+KCG + SAL +F   G + K    +N+MI
Sbjct: 149 DLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMI 208

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G+A +G  + ++ +F  ++ +G +P E TFV VL  C H+ ++ +G  LFE+M   YG+
Sbjct: 209 AGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGI 268

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +PQ+EHY C+VDLL R G +EEA   + +KM      ++ +W ALLSACR +G +++G  
Sbjct: 269 KPQMEHYGCMVDLLGRYGCLEEAYDLV-QKMP--FEANSVIWRALLSACRTHGNVKIGEI 325

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             +KL EM     + +VL  NI  +A    EA +VRK++ + G++K PG S IE+ G + 
Sbjct: 326 AGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIH 385

Query: 417 EFLAGDNRHAQAGEI 431
            F+A D  H Q  EI
Sbjct: 386 RFVASDKSHPQGKEI 400



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 113/239 (47%), Gaps = 11/239 (4%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           W+ ++  YSR  + +E + L+  M   G+  PN      +L +CA L ++  G  VHS+ 
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            ++  E ++ +  A++ +YS  G+++ A ++F+    +D  ++N MI G A     + +L
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM--SAVYGVEPQLEHYACVV 307
            LF  M  S     E T VAVL+ C        G  L+     + V+     L   A V+
Sbjct: 122 CLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILT--AAVM 175

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           D+ A+ G ++ A +        +  G   V+ ++++    +G  E    V+R+L   G+
Sbjct: 176 DMYAKCGSIDSALEIFRRVGKNMKTG--FVFNSMIAGLAQHGLGETAITVFRELISTGL 232


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/397 (38%), Positives = 228/397 (57%), Gaps = 71/397 (17%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS-------------- 77
           T+P +IKAC     +  FG+ VH HV K GF  D ++VSSL+  Y+              
Sbjct: 2   TYPFVIKACN-ESSVTWFGLLVHTHV-KSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL 59

Query: 78  -----LVH------------KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                LV             +MG AR +FD+   RDV++W TM++GY  +G  + A+ LF
Sbjct: 60  CSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLF 119

Query: 121 EKMPERN-------------------------------AVSWSAIMAAYSRISDFKEVLS 149
           ++MPERN                                VSW++++A Y++     E L+
Sbjct: 120 DEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 179

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LF QM  VG+KP+E+ +VS+L+ACAHLGA+ +GL +H+Y     +E N I+ TA+VDMY+
Sbjct: 180 LFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 239

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  A  VF  + +KD  AWN +I+G+A+ G  K++ +LF  M ++G +P + TFVA
Sbjct: 240 KCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVA 299

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           +L+ C+HA MV +G  L + MS+ YG+EP++EHY CV+DLLARAG++EEA + I     G
Sbjct: 300 MLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELI-----G 354

Query: 330 LGGGDAN--VWGALLSACRIYGKIEVGNRVWRKLAEM 364
               + N    GALL  CRI+G  E+G  V ++L  +
Sbjct: 355 TMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINL 391



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 122/267 (45%), Gaps = 36/267 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q   P  ++  +  M  +G +P+  T   L+ AC  LG L+  G+ +H ++   
Sbjct: 164 MLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDK-GLHLHTYINDN 222

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  V ++L++ Y+   K+  A  +F+    +DV+ W T++ G   +G  + A++LF
Sbjct: 223 RIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLF 282

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                          ++M+E G++PN+   V++L+AC+H G + 
Sbjct: 283 -------------------------------KEMKEAGVEPNDITFVAMLSACSHAGMVD 311

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G   +   +  Y +E  V     V+D+ ++ G +  A+ +   +    +  A  A++ G
Sbjct: 312 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGG 371

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTET 265
             ++G+ +    +  R++    QP ++
Sbjct: 372 CRIHGNFELGEMVGKRLIN--LQPCQS 396


>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
          Length = 788

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 149/427 (34%), Positives = 235/427 (55%), Gaps = 5/427 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  PN   F  ++ AC  L  L   G  +HA  +K G   + FV  SL++ Y 
Sbjct: 367 YSQMLADGCRPNISCFSSVLSACASLEDLRG-GARIHARSLKMGSSTNVFVSCSLIDMYC 425

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
             +K G A+ +FD  P +++V W ++V GY   G    A  LF+KMP RN  SW+ I++ 
Sbjct: 426 KCNKCGDAQTIFDTLPQKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNLASWNTIISG 485

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y++   F + L  F  M   G  P E    SVL ACA+L ++  G   H+   +  +E++
Sbjct: 486 YAQNRQFVDALKSFNAMLASGQVPGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEES 545

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + + TA+ DMY+K G + S+  +F  +  ++   W AMI G+A NG A++S+ LF+ M+ 
Sbjct: 546 IFIGTALSDMYAKSGDLQSSKRMFYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMA 605

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +G  P E TF+A+L  C+H  +V   ++ F+ M A+ G+ P+ +HY C+VD+LARAG + 
Sbjct: 606 TGMTPNEHTFLALLFACSHGGLVEQAIHYFDKMQAL-GISPKEKHYTCMVDVLARAGRLA 664

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EAE  +   M      +AN W ALLSAC  Y   E+  R  ++L E+   + + +VL  N
Sbjct: 665 EAEALL---MKTPSKSEANSWAALLSACNTYRNEEIAERAAKRLHELAKDNTAGYVLLSN 721

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +Y   G   +A ++R L+  T +KK  GCS ++V G    F + + +H  + EI  ++  
Sbjct: 722 MYASCGRWKDAARIRVLMKGTTLKKDGGCSWVQVRGQYHAFFSWEAKHPLSMEIDEILDL 781

Query: 438 FLKMSNL 444
            +  S+L
Sbjct: 782 LMWESSL 788



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/433 (26%), Positives = 193/433 (44%), Gaps = 63/433 (14%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I G+++      ++  +  ML     PN  T   +IKACV  G      + +    +K  
Sbjct: 218 ISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEF-GLALSIVGLAIKSN 276

Query: 62  FGEDPF-VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           F E    V +SL+  Y  +     AR +FD+   +DVV+WT ++D Y + GD + AR + 
Sbjct: 277 FFESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVL 336

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPERN VSW  ++A + +  +  E + L+ QM   G +PN S   SVL+ACA L  + 
Sbjct: 337 DAMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLR 396

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H+ + +     NV ++ +++DMY KC     A ++F+ +  K+   WN+++SG +
Sbjct: 397 GGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLPQKNIVCWNSLVSGYS 456

Query: 241 MNGDAKKSLELFDR-------------------------------MVKSGTQPTETTFVA 269
            NG   +++ LF +                               M+ SG  P E TF +
Sbjct: 457 YNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALKSFNAMLASGQVPGEITFSS 516

Query: 270 VLTTC-----------THAKMVRDGL--NLF--ENMSAVYGVEPQLEH------------ 302
           VL  C            HAK ++ G+  ++F    +S +Y     L+             
Sbjct: 517 VLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRMFYQMPERN 576

Query: 303 ---YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
              +  ++  LA  G  EE+    E+ M      + + + ALL AC   G +E     + 
Sbjct: 577 DVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLVEQAIHYFD 636

Query: 360 KLAEMGITDFSTH 372
           K+  +GI+    H
Sbjct: 637 KMQALGISPKEKH 649



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 160/394 (40%), Gaps = 71/394 (18%)

Query: 49  FGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK--------------------------- 81
             + +HAH V+ G   D  V S LL  Y+   +                           
Sbjct: 98  LALSLHAHAVRSGVAADRSVASHLLTTYAAFARAAERDRAFGDCVAADAASPFAYDFMVS 157

Query: 82  -------MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
                  + +AR LFD  PDR VV++TTMVD   K G    A EL+E+ P  +   ++A 
Sbjct: 158 EHVKAGDIASARRLFDGMPDRTVVSYTTMVDALMKRGRVAEAVELYEQCPSGSVAFFTAT 217

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           ++ + R       L +FR+M    ++PN   +V ++ AC   G     L +   A + + 
Sbjct: 218 ISGFVRNELHHNALGVFRKMLSCRVRPNGITIVCMIKACVGAGEFGLALSIVGLAIKSNF 277

Query: 195 --------------------------------EKNVILATAVVDMYSKCGHVHSALSVFE 222
                                            K+V+  TA++D+YS+ G +  A  V +
Sbjct: 278 FESSIEVQNSLITLYLRMGDAAAARKVFDEMDVKDVVSWTALLDVYSESGDLDGARRVLD 337

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +  ++  +W  +I+     G+A ++++L+ +M+  G +P  + F +VL+ C   + +R 
Sbjct: 338 AMPERNEVSWGTLIARHEQRGNAAEAVKLYSQMLADGCRPNISCFSSVLSACASLEDLRG 397

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G  +    S   G    +     ++D+  +     +A+   +     L   +   W +L+
Sbjct: 398 GARIHAR-SLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDT----LPQKNIVCWNSLV 452

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           S     GK+     +++K+    +  ++T +  Y
Sbjct: 453 SGYSYNGKMVEAMYLFKKMPARNLASWNTIISGY 486



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 34/168 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+G  +  F + S+  + DM+  G  PN +TF  L+ AC   G                
Sbjct: 583 MIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGG---------------- 626

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  +V   + ++  +  +G        SP      +T MVD   + G    A  L 
Sbjct: 627 -------LVEQAIHYFDKMQALGI-------SPKEK--HYTCMVDVLARAGRLAEAEALL 670

Query: 121 EKMPERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
            K P ++ A SW+A+++A +   + +      +++ E+  K N +G V
Sbjct: 671 MKTPSKSEANSWAALLSACNTYRNEEIAERAAKRLHELA-KDNTAGYV 717


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 64  EDPFVVSSLLEFY-SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
            D F  +++++ Y  +   +  AR LFD+ PDRD+V W +M+DGY + G  + AR LFE+
Sbjct: 210 RDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEE 269

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MPERN +SWS ++  Y R  +  E L  F++M   G+KP+    V  + ACA LGA+ QG
Sbjct: 270 MPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQG 329

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            W+HSY ++  +  +V++ TA++DMY KCG +  A  +FE +  K    WN MI G+  +
Sbjct: 330 RWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTH 389

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G    +++LF++M        + + +AVLT+CTHA +V +GL +F  M    G+EP++EH
Sbjct: 390 GYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEH 449

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y  ++DLL RAG V++A   IE            +WG+LL++CR +  +E+      +LA
Sbjct: 450 YGALIDLLGRAGRVDQARNTIETMP---MEPTPELWGSLLASCRSHRCVELAELSVERLA 506

Query: 363 EMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            +G  D   +VL  NIY + G WD +  ++RKL+S  GMKK  G SVIEV+G + EF+ G
Sbjct: 507 SLGADDSGVYVLLSNIYADEGMWD-DVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNG 565

Query: 422 DNRHAQAGEIY 432
            + H    EIY
Sbjct: 566 GSSHPHKEEIY 576



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 33/223 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++   P  ++  +  ML  G +P+       + AC  LG LE  G ++H+++ K 
Sbjct: 281 VIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQ-GRWLHSYLEKK 339

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y    ++  A+ +F+  P + VVTW  M+ G G  G   +A    
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDA---- 395

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      + LF QM+      ++  +++VLT+C H G ++
Sbjct: 396 ---------------------------IKLFNQMETERAPMDDLSVLAVLTSCTHAGLVS 428

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +GL + +   K   LE  V    A++D+  + G V  A +  E
Sbjct: 429 EGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIE 471



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 44/248 (17%)

Query: 114 ENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           ++A  +F  + E   R+A  W+ ++  ++  S  + +L  F +M+ V + P+     +VL
Sbjct: 65  DHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRVAVAPDAYTFPAVL 123

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-------------------- 210
            AC        GL VH  A R  L+ ++    A++  Y +                    
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVS 183

Query: 211 ----------CGHVHSALSVFEGISNKDAGAWNAMISGVA-MNGDAKKSLELFDRMVKSG 259
                     CG V  A  +F+ +  +DA +W  MI G   M G   ++ ELFD+M    
Sbjct: 184 WNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRD 243

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
                +    +     H +M  +   LFE M      E  +  ++ V+D   R G   EA
Sbjct: 244 LVCWNSM---IDGYARHGRM-DEARVLFEEMP-----ERNVISWSIVIDGYVRFGEPNEA 294

Query: 320 EKFIEEKM 327
            +F +  +
Sbjct: 295 LEFFQRML 302


>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/371 (39%), Positives = 222/371 (59%), Gaps = 6/371 (1%)

Query: 64  EDPFVVSSLLEFY-SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
            D F  +++++ Y  +   +  AR LFD+ PDRD+V W +M+DGY + G  + AR LFE+
Sbjct: 104 RDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEE 163

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MPERN +SWS ++  Y R  +  E L  F++M   G+KP+    V  + ACA LGA+ QG
Sbjct: 164 MPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQG 223

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            W+HSY ++  +  +V++ TA++DMY KCG +  A  +FE +  K    WN MI G+  +
Sbjct: 224 RWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTH 283

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G    +++LF++M        + + +AVLT+CTHA +V +GL +F  M    G+EP++EH
Sbjct: 284 GYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEH 343

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y  ++DLL RAG V++A   IE            +WG+LL++CR +  +E+      +LA
Sbjct: 344 YGALIDLLGRAGRVDQARNTIETMP---MEPTPELWGSLLASCRSHRCVELAELSVERLA 400

Query: 363 EMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            +G  D   +VL  NIY + G WD +  ++RKL+S  GMKK  G SVIEV+G + EF+ G
Sbjct: 401 SLGADDSGVYVLLSNIYADEGMWD-DVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNG 459

Query: 422 DNRHAQAGEIY 432
            + H    EIY
Sbjct: 460 GSSHPHKEEIY 470



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 33/223 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++   P  ++  +  ML  G +P+       + AC  LG LE  G ++H+++ K 
Sbjct: 175 VIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQ-GRWLHSYLEKK 233

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y    ++  A+ +F+  P + VVTW  M+ G G  G   +A    
Sbjct: 234 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDA---- 289

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      + LF QM+      ++  +++VLT+C H G ++
Sbjct: 290 ---------------------------IKLFNQMETERAPMDDLSILAVLTSCTHAGLVS 322

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +GL + +   K   LE  V    A++D+  + G V  A +  E
Sbjct: 323 EGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIE 365



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 11/173 (6%)

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M+   + P+     +VL AC        GL VH  A R  L+ ++    A++  Y + G 
Sbjct: 1   MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60

Query: 214 VHSALSVFE-GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
             S   VF+ G+  +D  +WN+M++G    G+   + +LFD M +       T       
Sbjct: 61  CRSGRKVFDHGV--RDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGE 118

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
                   R+   LF+ M      +  L  +  ++D  AR G ++EA    EE
Sbjct: 119 MAGGVDRARE---LFDQMP-----DRDLVCWNSMIDGYARHGRMDEARVLFEE 163


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/441 (34%), Positives = 250/441 (56%), Gaps = 10/441 (2%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           Y++  FP+  +  + +M   G +PN  T   ++ AC  L  L++ G  +H   V+ G   
Sbjct: 240 YVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS-GKEIHGFAVRHGMVV 298

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           + FV S+L+  Y+    +  AR +FD  P RDVV+W  ++  Y K  ++E    LF KM 
Sbjct: 299 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKM- 357

Query: 125 ERNAV-----SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            R+ V     +W+A++         +E + +FR+MQ++G KPNE  + S+L AC+    +
Sbjct: 358 SRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENL 417

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H Y  R+    ++   TA++ MY+KCG ++ + +VF+ +  KD  AWN MI   
Sbjct: 418 RMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIAN 477

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G+ K++L LFD+M+ S  QP   TF  VL+ C+H+++V +G+ +F +M   + VEP 
Sbjct: 478 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD 537

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
             HY+CVVD+ +RAG + EA KFI+   G      A+ WGALL+ACR+Y  +E+     +
Sbjct: 538 ANHYSCVVDIYSRAGRLNEAYKFIQ---GMPMEPTASAWGALLAACRVYKNVELAKISAK 594

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL E+   +   +V  +NI   A    EA++VR L+ E G+ K PGCS ++V   V  F+
Sbjct: 595 KLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFV 654

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
            GD  + ++ +IY  +   ++
Sbjct: 655 VGDKSNIESDKIYNFLDELVE 675



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 1/204 (0%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DV     ++  YGK    E AR +F+ +  R+ VSW+++ + Y +    ++ + +FR+M 
Sbjct: 198 DVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMG 257

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G+KPN   + S+L ACA L  +  G  +H +A R+ +  N+ + +A+V +Y+KC  V 
Sbjct: 258 WSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVR 317

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  VF+ + ++D  +WN +++    N + +K   LF +M + G +  E T+ AV+  C 
Sbjct: 318 EARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 377

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQ 299
                 + + +F  M  + G +P 
Sbjct: 378 ENGRSEEAVEMFRKMQKM-GFKPN 400



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 32/287 (11%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +GDF  AR+LF+ +P+ +  + S +++A +      E + ++  +QE G+KP+    ++ 
Sbjct: 111 VGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAA 170

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
             ACA  G   +   VH  A R  +  +V +  A++  Y KC  V  A  VF+ +  +D 
Sbjct: 171 AKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDV 230

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG------ 283
            +W ++ S     G  +K +++F  M  SG +P   T  ++L  C   K ++ G      
Sbjct: 231 VSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGF 290

Query: 284 -------LNLF--ENMSAVYGVEPQLEHYACVVDLLARAGMV------------EEAEK- 321
                  +NLF    + ++Y     +     V DL+    +V            +E EK 
Sbjct: 291 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKG 350

Query: 322 ---FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
              F++    G+   +A  W A++  C   G+ E    ++RK+ +MG
Sbjct: 351 FSLFLKMSRDGVRADEA-TWNAVIGGCMENGRSEEAVEMFRKMQKMG 396



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 34/240 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G M+    + +V  +  M  MGF+PN  T   ++ AC     L   G  +H +V + 
Sbjct: 372 VIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLR-MGKEIHCYVFRH 430

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D    ++LL  Y+    +  +R +FD    +DVV W TM+      G+ + A  LF
Sbjct: 431 WKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLF 490

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KM               SR+                  +PN      VL+ C+H   + 
Sbjct: 491 DKM-------------LLSRV------------------QPNSVTFTGVLSGCSHSRLVE 519

Query: 181 QGLWVHSYAKRYHL-EKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G+ + +   R HL E +    + VVD+YS+ G ++ A    +G+     A AW A+++ 
Sbjct: 520 EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 579


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 245/433 (56%), Gaps = 6/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY QA   + +   +  M   G   + +T   L+ AC   G LE FG  VH+H++  
Sbjct: 182 MINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE-FGKLVHSHLLVR 240

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + ++L++ Y     +  A   FD  P ++ V+WT+M+    K    + AR+ F
Sbjct: 241 GCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWF 300

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++PE++ +SW+A+++ Y +   F E L L+ +M+ +G+ P+E  L +VL+AC  LG + 
Sbjct: 301 EQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLA 360

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H   +       V L  +++DMY++CG V +A+S+F  + +K+  +WNA+I  +A
Sbjct: 361 SGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALA 420

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A+ +L  F  MV     P E TFVA+L+ C H  ++  G   F+ M  VY V+P +
Sbjct: 421 MHGRAQDALMFFRSMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGV 480

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G + +A   I++        D  VWGALL ACRI+G I++G +V ++
Sbjct: 481 EHYACMVDLLGRGGQLAKAVDLIKDMP---MRPDVVVWGALLGACRIHGHIQIGKQVIKQ 537

Query: 361 LAEM-GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+ G++     ++S  +Y+   W+ +  ++RKL+ E GMKK  G S IE N  + E  
Sbjct: 538 LLELEGMSGGLFVLISNMLYETHQWE-DMKRLRKLMREWGMKKNMGVSSIETNSNIHESG 596

Query: 420 AGDNRHAQAGEIY 432
           A    H  + ++Y
Sbjct: 597 AEGIGHESSDDMY 609



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 171/390 (43%), Gaps = 82/390 (21%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  ++ P+ ++     M+  G  PN +T P L+KAC  +   E+  M  H  VVK 
Sbjct: 81  LIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHV-MVTHGVVVKL 139

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV ++LL  Y+    +G +R  FD+  DR+VV+W +M++GY + G         
Sbjct: 140 GFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAG--------- 190

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                 + +E  SLF  M+  G+  +E  LVS+L AC+  G + 
Sbjct: 191 ----------------------NTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE 228

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCG---------------------------- 212
            G  VHS+        ++ILA A+VDMY KCG                            
Sbjct: 229 FGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288

Query: 213 ---HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
               + +A   FE I  K   +WNAMIS     G   ++L+L++RM   G  P E T  A
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348

Query: 270 VLTTCTH------AKMVRDGL-NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           VL+ C         KM+ D + + F N        P +  +  ++D+ AR G V+ A   
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFHN--------PGVALFNSLLDMYARCGQVDTAISL 400

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             E    +   +   W A++ A  ++G+ +
Sbjct: 401 FSE----MPSKNVISWNAIIGALAMHGRAQ 426



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 119/261 (45%), Gaps = 5/261 (1%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR+LF+++P+ +   +++++ AY      +E L L R M   G+ PNE  L  +L ACA 
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           + A    +  H    +      V +  A++  Y+  G +  +   F+ + +++  +WN+M
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A  G+ +++  LF+ M + G    E T V++L  C+    +  G  L  +   V G
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFG-KLVHSHLLVRG 241

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
               L     +VD+  + G +  A    +     +   +A  W ++L A      I+   
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDM----MPFKNAVSWTSMLCALAKRASIDAAR 297

Query: 356 RVWRKLAEMGITDFSTHVLSY 376
             + ++ E  I  ++  +  Y
Sbjct: 298 DWFEQIPEKSIISWNAMISCY 318


>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
          Length = 447

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/421 (33%), Positives = 239/421 (56%), Gaps = 6/421 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVIL-GPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  L+  C       E  G  +H +  K G      +V +++L  
Sbjct: 6   FSDMRFAGVEPNHITFIALLSGCGDFPSGSEALGDLLHGYACKLGLDRTHVMVGTAILGM 65

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS   +   AR +FD   D++ VTW TM+DGY + G    A +LF++M  R+ +SW+A++
Sbjct: 66  YSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRDLISWTAMV 125

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E LS FR+MQ  G+KP+   +++ L AC +LGA++ GLW+H Y      +
Sbjct: 126 NGFVKKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFK 185

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV ++ +++D+Y +CG V  A  VF+ +  +   +WN++I G A NG+A +SL  F +M
Sbjct: 186 NNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVSWNSVIVGFAANGNAHESLFYFRKM 245

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G +P   TF   LT C+H  +V +GL  F+ M   Y + P++EHY C+VDL +RAG 
Sbjct: 246 QEEGFKPDAVTFTGALTACSHVGLVEEGLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGR 305

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDFSTHVL 374
           +E+A K ++         +  V G+LL+AC+ +G    +  R+ + L+++ +   S +V+
Sbjct: 306 LEDALKVVQSMP---MKPNEVVIGSLLAACKNHGNNTLLAERLMKHLSDLNVKSHSNYVI 362

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
             N+Y   G    A+K+R+ +   G+KK+PG S IE++     F+AGD+ H +   I  +
Sbjct: 363 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDECTHVFMAGDSAHVETANIREI 422

Query: 435 I 435
           +
Sbjct: 423 L 423


>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/422 (36%), Positives = 247/422 (58%), Gaps = 26/422 (6%)

Query: 25  GFEPNNYTFPPLIKACVILGPLE--NFGMFVHAHVVKFGFG-EDPFVVSSLLEFYSLVHK 81
           G  PN+ TF  L+ AC    PLE   FG  +HA+V K G   E+  V ++L++ YS   +
Sbjct: 84  GVRPNHITFLTLLSACTDF-PLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQ 142

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +  A  +FD+   R+ V+W TM+DG  + G+   A  LF++M ER+A+SW++++  + + 
Sbjct: 143 LDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKK 202

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
             F++ L  FR+MQ  G++P+   ++SVL ACA+LGA+  GLW++ +  +   + N+ ++
Sbjct: 203 GCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKIS 262

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            +++DMYS+CG +  A  VFE +  +   +WN+MI G A+NG A+++LE F+ M K G  
Sbjct: 263 NSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEG-- 320

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
                         H+ +V +GL  F+ M     + P++EHY C+VDL +RAG +E+A  
Sbjct: 321 --------------HSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALN 366

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            I          +  V G+LL+ACR +G + +  R+ + L E+     S +VL  NIY  
Sbjct: 367 VIANMP---MKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNYVLLSNIYAA 423

Query: 382 AG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI-HSFL 439
            G WD  A+KVRK +   G+ KKPG S IE++G + EF+AGD  H +   IY ++ H FL
Sbjct: 424 VGRWD-GASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYAMLDHLFL 482

Query: 440 KM 441
           ++
Sbjct: 483 EL 484



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 116/237 (48%), Gaps = 37/237 (15%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH--LGAITQ 181
           P    VSW++ +A + R     E  + F +MQ  G++PN    +++L+AC    L  +  
Sbjct: 50  PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109

Query: 182 GLWVHSYAKRYHLE-KNVILATAVVDMYSKCG------------HVHSALS--------- 219
           G  +H+Y ++  L+ +NV++ TA+VDMYSKCG            HV +++S         
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169

Query: 220 ----------VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                     +F+ +S +DA +W +MI G    G  +++LE F  M  +G +P   T ++
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229

Query: 270 VLTTCTHAKMVRDGLNLFENMSAV-YGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           VL  C  A +   GL L+ N   +    +  ++    ++D+ +R G +  A +  E+
Sbjct: 230 VLAAC--ANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQ 284



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 28/203 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+++    + ++  + +M   G EP+  T   ++ AC  LG L   G++++  V+K 
Sbjct: 195 MIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGAL-GLGLWINRFVMKQ 253

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE-- 118
            F ++  + +SL++ YS    +  AR +F++ P R +V+W +M+ G+   G  E A E  
Sbjct: 254 DFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFF 313

Query: 119 -----------------LFEKMPERNAVS-----WSAIMAAYSRISDFKEVLSLFRQMQE 156
                             F+ M     +S     +  ++  YSR    ++ L++   M  
Sbjct: 314 NLMRKEGHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMP- 372

Query: 157 VGMKPNESGLVSVLTACAHLGAI 179
             MKPNE  L S+L AC   G +
Sbjct: 373 --MKPNEVVLGSLLAACRTHGDV 393


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 242/434 (55%), Gaps = 39/434 (8%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I GY +    K ++  +  M+     P+  T   ++ AC   G +E  G  VH+ +   G
Sbjct: 207 ISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIE-LGRQVHSWINDHG 265

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           FG +  +V++L++ YS                               K G+ E A  LF+
Sbjct: 266 FGXNLKIVNALIDLYS-------------------------------KCGELETACGLFQ 294

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            +  ++ +SW+ ++  Y+ ++ +KE L LF+ M   G KPN+  ++S+L+ACAHLGAI  
Sbjct: 295 GLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDI 354

Query: 182 GLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           G W+H Y  KR     N   L T+++DMY+KCG + +A  VF+ + N+   +WNAMI G 
Sbjct: 355 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGF 414

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G A  + ++F RM K+G +P + TFV +L+ C+H+ M+  G ++F +M+  Y + P+
Sbjct: 415 AMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPK 474

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           LEHY C++DL   +G+ +EAEK I   +M      D  +W +LL AC+++G +E+G    
Sbjct: 475 LEHYGCMIDLXGHSGLFKEAEKMINTMEM----EPDGVIWCSLLKACKMHGNVELGESYA 530

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           + L ++   +  ++VL  NIY  A    E  K R L+++ GMKK PGCS IE++ VV EF
Sbjct: 531 QNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 590

Query: 419 LAGDNRHAQAGEIY 432
           + GD  H +  EIY
Sbjct: 591 IIGDKFHPRNREIY 604



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 113/368 (30%), Positives = 214/368 (58%), Gaps = 8/368 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  ++  Y+ M+ +G  PN+YTFP L+K+C      +  G  +H  V+KF
Sbjct: 74  MFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKE-GQQLHGQVLKF 132

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D ++ +SL+  Y    ++  A+ + DKS  RDVV++T ++ GY   G  E+A ++F
Sbjct: 133 GFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A ++ Y+   ++KE L LF++M +  ++P+ES +V+VL+ACA  G+I 
Sbjct: 193 DEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIE 252

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D+YSKCG + +A  +F+G+SNKD  +WN +I G  
Sbjct: 253 LGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYT 312

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG +P + T +++L+ C H   +  G  ++++ +   + GV  
Sbjct: 313 HMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYID-KRLKGVTN 371

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
                  ++D+ A+ G +E A++  +  +        + W A++    ++G+      ++
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAQQVFDSML----NRSLSSWNAMIFGFAMHGRANAAFDIF 427

Query: 359 RKLAEMGI 366
            ++ + GI
Sbjct: 428 SRMRKNGI 435



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 147/320 (45%), Gaps = 20/320 (6%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL---VHKMGTAR 86
           N+    L+  C  L  L      +HA ++K G     + +S LLE   L      +  A 
Sbjct: 2   NHPSLSLLHXCKTLQSLR----IIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAI 57

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE----RNAVSWSAIMAAYSRIS 142
           ++FD   +  ++ W TM  G+    D  +A +L+  M       N+ ++  ++ + ++  
Sbjct: 58  SVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSX 117

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            FKE   L  Q+ + G   +     S+++     G +     V   +      ++V+  T
Sbjct: 118 AFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSS----HRDVVSYT 173

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++  Y+  G + SA  +F+ I  KD  +WNA ISG A  G+ K++LELF +M+K+  +P
Sbjct: 174 ALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRP 233

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E+T V VL+ C  +  +  G  +   ++  +G    L+    ++DL ++ G +E A   
Sbjct: 234 DESTMVTVLSACAQSGSIELGRQVHSWIND-HGFGXNLKIVNALIDLYSKCGELETACGL 292

Query: 323 IEEKMGGLGGGDANVWGALL 342
            +    GL   D   W  L+
Sbjct: 293 FQ----GLSNKDVISWNTLI 308


>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
          Length = 496

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 239/421 (56%), Gaps = 6/421 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGP-LENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
           + DM   G EPN+ TF  L+  C       E+FG  +H +  K G   +  +V ++++  
Sbjct: 55  FSDMRFAGVEPNHITFIALLSGCGDFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGM 114

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YS   ++  AR +FD    ++ +TW TM+DGY + G  ++A +LF++MPER  +SW+A++
Sbjct: 115 YSKHGRVSKARLVFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMI 174

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             + +    +E L  FR+MQ  G++P+   +++VL AC +LGA++ GLWVH Y       
Sbjct: 175 NGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFR 234

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            NV +  + +D++ +CG V  A  VF+ +  +   +WN++I   + NG A +SL  F RM
Sbjct: 235 NNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYFRRM 294

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            + G +P   TF   LT C+H  +V +GL  F+ M   Y + P++EHY C+VDL +RAG 
Sbjct: 295 QEEGFKPNAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGR 354

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVL 374
           +E+A   ++         +  V G+LL+ACR +G   V   R+ + L++  +   S +V+
Sbjct: 355 LEDALNVVQSMP---MKPNEVVIGSLLAACRTHGNNTVLAERLMKHLSDTNVKSHSNYVI 411

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
             N+Y   G    A+K+R+ +   G+KK+PG S IE++     F+AGD+ H + G I  V
Sbjct: 412 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCTHVFMAGDSAHVETGYIREV 471

Query: 435 I 435
           +
Sbjct: 472 L 472



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 13/203 (6%)

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D  NA+   +K+     +SW++ +   SR     E    F  M+  G++PN    +++L+
Sbjct: 18  DQTNAKT--QKLNLSTTISWTSRITLLSRNGRLAEAAKEFSDMRFAGVEPNHITFIALLS 75

Query: 172 ACAHL--GAITQGLWVHSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKD 228
            C     G+ + G  +H YA +  L++N V++ TA++ MYSK G V  A  VF+ +  K+
Sbjct: 76  GCGDFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKARLVFDHMEGKN 135

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
           +  WN MI G    G    + +LFD M + G      ++ A++          + L  F 
Sbjct: 136 SMTWNTMIDGYMRKGKIDDAYKLFDEMPERGL----ISWTAMINGFVKKGFHEEALVWFR 191

Query: 289 NMSAVYGVEPQLEHYACVVDLLA 311
            M +  GVEP    Y  ++ +LA
Sbjct: 192 EMQSS-GVEPD---YVAIIAVLA 210



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 103/232 (44%), Gaps = 41/232 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+++  F + ++  + +M   G EP+      ++ AC  LG L +FG++VH ++V  
Sbjct: 173 MINGFVKKGFHEEALVWFREMQSSGVEPDYVAIIAVLAACTNLGAL-SFGLWVHRYLVSR 231

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  +  V +S ++ +     +  A+ +FD    R VV+W +++  +   G  + +   F
Sbjct: 232 DFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRTVVSWNSVIVVFSANGHADESLVYF 291

Query: 121 EKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            +M E     NAV+++  + A                                   C+H+
Sbjct: 292 RRMQEEGFKPNAVTFTGALTA-----------------------------------CSHV 316

Query: 177 GAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           G + +GL +  +  K Y +   +     +VD+YS+ G +  AL+V + +  K
Sbjct: 317 GLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMK 368


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/412 (35%), Positives = 232/412 (56%), Gaps = 4/412 (0%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +ML  G  P+  T    I AC  LG L + G   HA+V + G      + +++++ Y   
Sbjct: 314 EMLQKGQRPDKVTMLSTIAACAQLGDL-SVGKSSHAYVFRNGLERLDNISNAIIDMYMKC 372

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            K   A  +FD   ++ VVTW +++ G  + G+ E A  +F +MPE N VSW+ ++ A  
Sbjct: 373 GKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMV 432

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           + S F+E + L R+MQ  G+K +   +V + +AC +LGA+    W+++Y ++  +  ++ 
Sbjct: 433 QASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQ 492

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L TA+VDM+S+CG   +A+ VFE +  +D  AW A I   A+ G+AK ++ELFD M+K  
Sbjct: 493 LGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQD 552

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +  +  FVA+LT  +H   V  G  LF  M  ++GV PQ+ HY C+VDLL RAG++EEA
Sbjct: 553 VKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEA 612

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
             F   K   +   D  +WG+ L+ACR +  +E  N    K+ ++       HVL  NIY
Sbjct: 613 --FDLMKSMPIKPNDV-IWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIY 669

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             AG   +  +VR  + E G +K  G S IEV+G++ EF +GD  H +  +I
Sbjct: 670 ASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQI 721



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 188/385 (48%), Gaps = 60/385 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRGY  +   K ++F YL M+  MG  P+N+TFP L+ AC  +      G+ VH  VVK
Sbjct: 92  LIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSE-GVQVHGVVVK 150

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G  +D FV +SL+ FY+                                 G  +  R++
Sbjct: 151 MGLVKDLFVANSLIHFYAAC-------------------------------GKVDLGRKV 179

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++M ERN VSW++++  YS ++  KE + LF +M EVG++PN   +V  ++ACA L  +
Sbjct: 180 FDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDL 239

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  V +      ++ N ++  A++DMY KCG +++   +F+  S+K+   +N ++S  
Sbjct: 240 ELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNY 299

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNLFE 288
             +G A + L + D M++ G +P + T ++ +  C           +HA + R+GL   +
Sbjct: 300 VQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLD 359

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
           N+S              ++D+  + G  E A K  +     +       W +L++     
Sbjct: 360 NISNA------------IIDMYMKCGKREAACKVFD----SMSNKTVVTWNSLIAGLVRD 403

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHV 373
           G++E+  R++ ++ E  +  ++T +
Sbjct: 404 GELELALRIFGEMPESNLVSWNTMI 428


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  275 bits (704), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 154/477 (32%), Positives = 243/477 (50%), Gaps = 41/477 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+   F    V  +  M      P++YTFP ++KAC   G +   G  +H    K 
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV-IGRKIHGSATKV 169

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
           G     FV + L+  Y     +  AR + D+   RDVV+W ++V GY +   F++A    
Sbjct: 170 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC 229

Query: 117 ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
                                            +++F KM +++ VSW+ ++  Y + + 
Sbjct: 230 REMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAM 289

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             E + L+ +M+  G +P+   + SVL AC    A++ G  +H Y +R  L  N++L  A
Sbjct: 290 PVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A  VFE + ++D  +W AMIS    +G    ++ LF ++  SG  P 
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPD 409

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV  L  C+HA ++ +G + F+ M+  Y + P+LEH AC+VDLL RAG V+EA +FI
Sbjct: 410 SIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI 469

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           ++        +  VWGALL ACR++   ++G     KL ++       +VL  NIY +AG
Sbjct: 470 QDMS---MEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
              E   +R ++   G+KK PG S +EVN ++  FL GD  H Q+ EIYR +   +K
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVK 583



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 78/153 (50%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++  Y  + D  +AR++F+++PERN +  + ++ +Y     + E + +F  M    ++P+
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
                 VL AC+  G I  G  +H  A +  L   + +   +V MY KCG +  A  V +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +S +D  +WN+++ G A N     +LE+   M
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 5/158 (3%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VHS      L  N  L   ++  Y+    V SA  VF+ I  ++    N MI     NG 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
             + +++F  M     +P   TF  VL  C+ +  +  G  +  + + V G+   L    
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGN 179

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            +V +  + G + EA   ++E    +   D   W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDE----MSRRDVVSWNSLV 213


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 245/439 (55%), Gaps = 30/439 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y + N P+ ++  Y  +  M FE +N+  P ++KAC  +      G  +H  V+K 
Sbjct: 130 VITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVS-WTQLGKEIHGFVLKK 188

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTW----TTMVDGYGKMGDFENA 116
           G   D FV ++L+  Y     +  AR +FDK  +RDVV+W    T ++D Y K G    A
Sbjct: 189 GLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLA 248

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R+LF  + ++  VSW+A++A   R +  +E   LF +MQE  + PNE  +++        
Sbjct: 249 RQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLN-------- 300

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
                         +  +E + IL TA+VDMY+KCG +++A  +F    ++D   WNA+I
Sbjct: 301 --------------KERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAII 346

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G AM+G  +++L++F  M + G +P + TF+ +L  C+HA +V +G  LFE M   +G+
Sbjct: 347 TGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGL 406

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            PQ+EHY C+VDLL RAG+++EA + I+         +  VWGAL++ACR++   ++G  
Sbjct: 407 VPQIEHYGCMVDLLGRAGLLDEAHEMIKSMP---IKPNTIVWGALVAACRLHKNPQLGEL 463

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              +L E+   +   +VL  NIY  A    +A  VRK +   GMKK+PG SVIEVNG V 
Sbjct: 464 AATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVH 523

Query: 417 EFLAGDNRHAQAGEIYRVI 435
           EFL GD  H Q   I  ++
Sbjct: 524 EFLMGDQSHPQIRRINEML 542


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/346 (38%), Positives = 213/346 (61%), Gaps = 3/346 (0%)

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
           R+    T+++D Y K G  + AR+LF++M +R+ V+WSA+++ Y++    KE L+LF +M
Sbjct: 255 RNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEM 314

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
           Q+  + PNE  +VSVL +CA LGA   G WVH Y K+  ++  V L T ++D Y+KCG++
Sbjct: 315 QKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYI 374

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             ++ VF+ +S K+   W A+I G+A NG+ K +LE F  M+++  +P + TF+ VL+ C
Sbjct: 375 DRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSAC 434

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334
           +HA +V  G +LF +M   + +EP++EHY C+VD+L RAG +EEA +FI+         +
Sbjct: 435 SHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFID---NMPFPPN 491

Query: 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394
           A VW  LL++CR +  IE+  +    +  +       ++L  N Y   G   +A +VR L
Sbjct: 492 AVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSL 551

Query: 395 ISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           I E  +KK PGCS+IE++GVV EF + D  H  + EI+  +   +K
Sbjct: 552 IKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMK 597



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 142/274 (51%), Gaps = 32/274 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG      P  ++  +  M +   + + +TF  ++KAC  +  L   G  VHA ++K 
Sbjct: 92  MIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALRE-GEQVHALILKS 150

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + FV ++L++ Y+   ++G A                               R +F
Sbjct: 151 GFKSNEFVENTLIQMYANCGQIGVA-------------------------------RHVF 179

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPER+ V+W+++++ Y++   + EV+ LFR++ E+ ++ ++  ++SVL AC  L  + 
Sbjct: 180 DGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLE 239

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +  Y     L +N  L T+++DMY+KCG V +A  +F+ +  +D  AW+AMISG A
Sbjct: 240 IGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYA 299

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
                K++L LF  M K    P E T V+VL +C
Sbjct: 300 QADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSC 333



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 131/293 (44%), Gaps = 38/293 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLV--HKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           VHAH++K     DP +  ++LE  +L+    +  A ++F+     +   +  M+ G    
Sbjct: 40  VHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLA-- 97

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
                    F++ P+ NA                   L LF++M E  ++ ++    SVL
Sbjct: 98  ---------FKRSPD-NA-------------------LLLFKKMHEKSVQHDKFTFSSVL 128

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC+ + A+ +G  VH+   +   + N  +   ++ MY+ CG +  A  VF+G+  +   
Sbjct: 129 KACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIV 188

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AWN+M+SG   NG   + ++LF ++++   +  + T ++VL  C     +  G  L    
Sbjct: 189 AWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIG-ELIGEY 247

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
               G+         ++D+ A+ G V+ A K  +E    +   D   W A++S
Sbjct: 248 IVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDE----MDKRDVVAWSAMIS 296


>gi|414884999|tpg|DAA61013.1| TPA: hypothetical protein ZEAMMB73_343744 [Zea mays]
          Length = 557

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 142/350 (40%), Positives = 216/350 (61%), Gaps = 8/350 (2%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D    +S+L  Y+    M +A+ LFD  P RDVV+W +M+DGY + GD E  R +F+ M
Sbjct: 212 RDVVTWNSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGM 271

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQG 182
           P R+ VSW+ ++A Y+++ D+ E L+LF  M  VG  KPNE   VSVLTAC HLG + +G
Sbjct: 272 PRRSTVSWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGHLGDLERG 331

Query: 183 LWVHSYAKRY--HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            WVH         L  +V+L TA++ MY+KCG + +A  +F+ ++ +   +WN+MI G  
Sbjct: 332 RWVHHLVHESWERLLPDVLLLTAMMTMYAKCGVMGTAKEIFDLMTERSVASWNSMIIGYG 391

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G ++K+LELF  M K+G QP ETTF+ +L++C H  +V +G   F+ M   Y +EP+ 
Sbjct: 392 LHGYSEKALELFMEMEKNGPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKA 451

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EH+ C++DLL RAG++ ++E  I      +      +WGAL+SA R     ++G  +  K
Sbjct: 452 EHFGCMMDLLGRAGLLRDSENLINNLQAKVSPA---LWGALISASRTQDSSKLGEFIGTK 508

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVI 409
           L EM  T+FS++VL  NIY   G WD +  KVRK++ E  ++K  G S++
Sbjct: 509 LIEMKPTEFSSYVLLSNIYATEGRWD-DVEKVRKVMKEKVVEKDVGMSLV 557



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 112/227 (49%), Gaps = 16/227 (7%)

Query: 56  HVVKFGFGEDPF---VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           H +   +G  P    + +SLL  Y       +AR L    P  D VTW T++  + +MG 
Sbjct: 108 HALGLSYGHLPSDLRLANSLLSLYLSHGSTASARRLLADIPRPDTVTWNTLLRSFLRMGL 167

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              AR LF++MPER+ V+++++++ Y+   D      LF  M E            V+T 
Sbjct: 168 LPAARRLFDEMPERDLVTYNSMLSGYAAEGDIANARELFDGMPE----------RDVVTW 217

Query: 173 CAHLGAITQGLWVHSYAKRYHLE--KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            + L    Q   + S  + + +   ++V+   +++D Y++ G +     VF+G+  +   
Sbjct: 218 NSMLAGYAQRGDMESAKRLFDVMPVRDVVSWNSMLDGYAQTGDIEMTRMVFDGMPRRSTV 277

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTH 276
           +WN +++  A   D  + L LFD M+   G++P E TFV+VLT C H
Sbjct: 278 SWNVVLALYAKVKDWHECLNLFDAMMAVGGSKPNEKTFVSVLTACGH 324



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 40/253 (15%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE---DPFVVSSLLEFYSLVHK 81
           G +PN  TF  ++ AC  LG LE  G +VH H+V   +     D  ++++++  Y+    
Sbjct: 307 GSKPNEKTFVSVLTACGHLGDLER-GRWVH-HLVHESWERLLPDVLLLTAMMTMYAKCGV 364

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           MGTA+ +FD   +R V +W +M+ GYG  G  E A ELF +M E+N              
Sbjct: 365 MGTAKEIFDLMTERSVASWNSMIIGYGLHGYSEKALELFMEM-EKN-------------- 409

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEKNVIL 200
                           G +PNE+  + +L++CAH G + +G W      R Y++E     
Sbjct: 410 ----------------GPQPNETTFICILSSCAHGGLVLEGWWCFDRMVRFYNIEPKAEH 453

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGA-WNAMISGVAMNGDAKKSLELFDRMVKSG 259
              ++D+  + G +  + ++   +  K + A W A+IS       +K    +  ++++  
Sbjct: 454 FGCMMDLLGRAGLLRDSENLINNLQAKVSPALWGALISASRTQDSSKLGEFIGTKLIE-- 511

Query: 260 TQPTETTFVAVLT 272
            +PTE +   +L+
Sbjct: 512 MKPTEFSSYVLLS 524


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 238/420 (56%), Gaps = 37/420 (8%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
             P+  T   L+ AC  LG LE  G  +H++  + G  E+  V +++L            
Sbjct: 7   LRPDEVTMVSLVPACAQLGNLER-GKLLHSYSKELGLDENLSVNNAIL------------ 53

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
                              D Y K  D E+A+E+F ++ E++ +SW+++++  ++   F+
Sbjct: 54  -------------------DMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQ 94

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E L+LFR+MQ   ++P+E  LV VL+ACA  GA+ QG ++H    ++ +  +++L TA+V
Sbjct: 95  ESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALV 154

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY+KCG +  AL VF  +  ++   WNAMI G+AM+G  + ++ LFD+M      P + 
Sbjct: 155 DMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDV 214

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           TF+A+L  C+HA +V +GL +F+ M   + +EP++EHY CVVDLL RA  V++A  FIE 
Sbjct: 215 TFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIEN 274

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE-AGW 384
                   ++ +W  LL ACR  G  ++  ++ R++ E+       +V+  N+Y   + W
Sbjct: 275 MP---IKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCGRYVMLSNLYAGVSQW 331

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           D  A K+RK +   G++K PGCS IE+NG++ +F+AGD  H Q  +IY +I    +  NL
Sbjct: 332 D-HALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNL 390



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 103/244 (42%), Gaps = 33/244 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G  ++ + + S+  +  M     EP+  T   ++ AC   G L+  G ++H  + KF
Sbjct: 83  MLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQ-GKYIHLLIDKF 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  + ++L++ Y+    +  A  +F +   R+V TW  M+ G    G  E+A    
Sbjct: 142 EINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDA---- 197

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      +SLF QM+   + P++   +++L AC+H G + 
Sbjct: 198 ---------------------------ISLFDQMEXDKLMPDDVTFIALLCACSHAGLVD 230

Query: 181 QGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           +GL +    K ++ +E  +     VVD+  +   V  AL+  E +  K      A + G 
Sbjct: 231 EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 290

Query: 240 AMNG 243
             +G
Sbjct: 291 CRSG 294


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/417 (36%), Positives = 236/417 (56%), Gaps = 46/417 (11%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGT 84
            +PN +TFP L KAC    P    G  +H HV+KF     DPFV ++LL +Y+   K+G 
Sbjct: 104 LKPNGFTFPSLFKACGS-QPWLRHGRALHTHVLKFLEPTCDPFVQAALLNYYAKCGKVGA 162

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR---- 140
                                           R LF ++ + +  SW++I++AY      
Sbjct: 163 C-------------------------------RYLFNQISKPDLASWNSILSAYVHNSGA 191

Query: 141 ----ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
               +S   EVL+LF +MQ+  +K NE  LV++++ACA LGA++QG W H Y  +++L+ 
Sbjct: 192 ICEDVSLSLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKL 251

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           N  + TA++DMYSKCG +  A  +F+ + ++D   +NAMI G A++G   ++L+LF +M 
Sbjct: 252 NHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMT 311

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G  P + T V  + +C+H  +V +G ++FE+M  VYGVEP+LEHY C+VDLL RAG +
Sbjct: 312 LEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRL 371

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            EAE   E  +      +A +W +LL A R++G +E+G  V + L ++       +VL  
Sbjct: 372 REAE---ERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLS 428

Query: 377 NIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           N+Y     WD +  +VRKL+ + G+ K PG S++EV G + EFL GD  H ++ EIY
Sbjct: 429 NMYASINRWD-DVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIY 484



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 39/267 (14%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +++M     + N  T   LI AC  LG L   G + H +V+K     + FV ++L++ YS
Sbjct: 206 FIEMQKSLIKANEVTLVALISACAELGALSQ-GAWAHVYVLKHNLKLNHFVGTALIDMYS 264

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +  A  LFD+ P RD + +  M+ G+   G    A                     
Sbjct: 265 KCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQA--------------------- 303

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV-HSYAKRYHLEK 196
                     L LF++M   G+ P++  LV  + +C+H+G + +G  V  S  + Y +E 
Sbjct: 304 ----------LDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEP 353

Query: 197 NVILATAVVDMYSKCGHVHSALS-VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +     +VD+  + G +  A   V       +A  W +++    ++G+    LE+ + +
Sbjct: 354 KLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGN----LEIGEVV 409

Query: 256 VKSGTQ-PTETTFVAVLTTCTHAKMVR 281
           +K   Q   ET+   VL +  +A + R
Sbjct: 410 LKHLIQLEPETSGNYVLLSNMYASINR 436


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 241/441 (54%), Gaps = 35/441 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+   +   P   V  Y  ML     P+NYTF  +IK+C  L  L   G  VH H V  
Sbjct: 78  VIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALR-IGKGVHCHAVVS 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D +V ++L+ FYS                               K GD E AR++F
Sbjct: 137 GFGLDTYVQAALVTFYS-------------------------------KCGDMEGARQVF 165

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPE++ V+W+++++ + +     E + +F QM+E G +P+ +  VS+L+ACA  GA++
Sbjct: 166 DRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVS 225

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH Y     L+ NV L TA++++YS+CG V  A  VF+ +   +  AW AMIS   
Sbjct: 226 LGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYG 285

Query: 241 MNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            +G  ++++ELF++M    G  P   TFVAVL+ C HA +V +G ++++ M+  Y + P 
Sbjct: 286 THGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPG 345

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA-NVWGALLSACRIYGKIEVGNRVW 358
           +EH+ C+VD+L RAG ++EA KFI + +   G   A  +W A+L AC+++   ++G  + 
Sbjct: 346 VEHHVCMVDMLGRAGFLDEAYKFIHQ-LDATGKATAPALWTAMLGACKMHRNYDLGVEIA 404

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           ++L  +   +   HV+  NIY  +G   E + +R  +    ++K+ G SVIEV      F
Sbjct: 405 KRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMF 464

Query: 419 LAGDNRHAQAGEIYRVIHSFL 439
             GD  H + GEIYR + + +
Sbjct: 465 SMGDESHQETGEIYRYLETLI 485



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 175/410 (42%), Gaps = 68/410 (16%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           N+  +  +++A    GP       VHAH++  G+G    +++ L+          +ARA 
Sbjct: 8   NSAAYEAIVRA----GPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLAC------SARA- 56

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
                    + +T +               LF  +P  +   +++++ + S++      +
Sbjct: 57  ---------IAYTHL---------------LFLSVPLPDDFLFNSVIKSTSKLRLPLHCV 92

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           + +R+M    + P+     SV+ +CA L A+  G  VH +A       +  +  A+V  Y
Sbjct: 93  AYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFY 152

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           SKCG +  A  VF+ +  K   AWN+++SG   NG A +++++F +M +SG +P   TFV
Sbjct: 153 SKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFV 212

Query: 269 AVLTTC-----------THAKMVRDGLNL-------FENMSAVYG------------VEP 298
           ++L+ C            H  ++ +GL+L         N+ +  G             E 
Sbjct: 213 SLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKET 272

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRV 357
            +  +  ++      G  ++A +   +     G    NV + A+LSAC   G +E G  V
Sbjct: 273 NVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSV 332

Query: 358 WRKLAEMG--ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405
           ++++ +    I     HV   ++   AG+  EA K    +  TG    P 
Sbjct: 333 YKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPA 382


>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 520

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/424 (37%), Positives = 231/424 (54%), Gaps = 11/424 (2%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IR       P  +V  ++DML     P   TFP L  A   LG  ++ G  +H  V+K G
Sbjct: 103 IRALSDGPGPDAAVALFVDMLRSPTPPERRTFPSLFAAYARLGRADD-GAALHGMVLKLG 161

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
              D +  ++ +  Y+   +   A ALF +    DVV   + +    + G  + AR +F+
Sbjct: 162 LAGDAYTRNTTIAMYASSGRADEALALFGQCQVFDVVACNSAIVALSRAGRVDEARAVFD 221

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            MP R   +WSA+++AYSR + F + + LF  MQ  G++PN + LVSVL  CA LGA+ Q
Sbjct: 222 GMPSRTVATWSAMVSAYSRAARFHDAVDLFSAMQVDGVEPNANVLVSVLGCCASLGALEQ 281

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-----AWNAMI 236
           G WVH+Y  +  +  N ++  A+VDMY KCG +H A  VF+  +++  G     +WNAM+
Sbjct: 282 GAWVHAYIDKQDVGMNALVVIALVDMYCKCGSIHKARQVFD--TSRSQGLAKLSSWNAMM 339

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G+A +G  +++L LF  +   G +P   TF+A+L    H+ M  +   LF +M+  YGV
Sbjct: 340 LGLAAHGQCQEALALFSELESYGLRPDNVTFIAMLMAYGHSGMADEAKALFASMAREYGV 399

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P +EHY C+VD LARAG + EAE  I          DA +WGALLS CR++G  E G R
Sbjct: 400 TPGIEHYGCLVDALARAGRLREAEDTIRAMP---MKPDAAIWGALLSGCRLHGDAEAGAR 456

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             R   E    D   +VL+ ++    G       VR  + E G+ K PGCS+IEV+GVV 
Sbjct: 457 AARGAVECDPRDSGAYVLAASVLARDGEVGRGLGVRGKMREEGVAKVPGCSMIEVDGVVH 516

Query: 417 EFLA 420
           EF++
Sbjct: 517 EFVS 520



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/400 (20%), Positives = 162/400 (40%), Gaps = 38/400 (9%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK-MGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           +HA +VK G  +DP   S  + F +   +    A  +    P  +   W T +       
Sbjct: 51  LHAALVKSGLSKDPIAASRAVAFCAGEGRDAAYAARIVRYHPRPNSFMWNTAIRALSDGP 110

Query: 112 DFENARELFEKM------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
             + A  LF  M      PER   ++ ++ AAY+R+    +  +L   + ++G+  +   
Sbjct: 111 GPDAAVALFVDMLRSPTPPERR--TFPSLFAAYARLGRADDGAALHGMVLKLGLAGDAYT 168

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
             + +   A  G   + L +    + +    +V+   + +   S+ G V  A +VF+G+ 
Sbjct: 169 RNTTIAMYASSGRADEALALFGQCQVF----DVVACNSAIVALSRAGRVDEARAVFDGMP 224

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
           ++    W+AM+S  +       +++LF  M   G +P     V+VL  C     +  G  
Sbjct: 225 SRTVATWSAMVSAYSRAARFHDAVDLFSAMQVDGVEPNANVLVSVLGCCASLGALEQGAW 284

Query: 286 LFE-------NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANV 337
           +          M+A+  +         +VD+  + G + +A + F   +  GL     + 
Sbjct: 285 VHAYIDKQDVGMNALVVIA--------LVDMYCKCGSIHKARQVFDTSRSQGL--AKLSS 334

Query: 338 WGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV-RKLI 395
           W A++     +G+ +    ++ +L   G+  D  T +     Y  +G   EA  +   + 
Sbjct: 335 WNAMMLGLAAHGQCQEALALFSELESYGLRPDNVTFIAMLMAYGHSGMADEAKALFASMA 394

Query: 396 SETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            E G+   PG   IE  G + + LA   R  +A +  R +
Sbjct: 395 REYGV--TPG---IEHYGCLVDALARAGRLREAEDTIRAM 429


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/422 (35%), Positives = 236/422 (55%), Gaps = 11/422 (2%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFYSLV 79
           ML+   EP+  T   +I AC  L  ++  G  VHA VVK      D  + ++ ++ Y+  
Sbjct: 244 MLESWVEPDEVTLASVISACASLSAIK-VGQEVHARVVKMDKLRNDIILSNAFVDMYAKC 302

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            ++  AR +FD  P R+V+  T+MV GY      + AR +F KM ERN VSW+A++A Y+
Sbjct: 303 SRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYT 362

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL----- 194
           +  + +E LSLF  ++   + P      ++L ACA L  +  G+  H +  ++       
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSG 422

Query: 195 -EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            E ++ +  +++DMY KCG V     VF  +  +D  +WNAMI G A NG   ++LELF 
Sbjct: 423 EEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFR 482

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M+ SG +P   T + VL+ C HA  V +G + F +M+  +GV P  +HY C+VDLL RA
Sbjct: 483 EMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRA 542

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G +EEA+  IEE        D+ +WG+LL+AC+++  I +G  V  KL E+  ++   +V
Sbjct: 543 GFLEEAKSIIEEMP---VQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYV 599

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y E G   +A  VRKL+ + G+ K+PGCS I++ G    F+  D  H +  +I+ 
Sbjct: 600 LLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHPRKKQIHS 659

Query: 434 VI 435
           ++
Sbjct: 660 LL 661



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 162/295 (54%), Gaps = 1/295 (0%)

Query: 33  FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS 92
           F  L+ +C+ L         VHA V+K GF  + F+ + L++ Y+    +   R LFDK 
Sbjct: 22  FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           P R+V TW ++V G  K+G  + A  LF  MPER+  +W+++++ +++    +E L  F 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
            M + G   NE    S L+AC+ L  + +G+ +HS   +     +V + +A+VDMYSKCG
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
           +V+ A  VF+ + +++  +WN++I+    NG A ++L++F  M++S  +P E T  +V++
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
            C     ++ G  +   +  +  +   +      VD+ A+   ++EA +FI + M
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEA-RFIFDSM 315



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 156/355 (43%), Gaps = 69/355 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G+ Q +  + +++ +  M   GF  N YTF   + AC  L  + N G+ +H+ + K 
Sbjct: 123 MVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDM-NRGVQIHSLIAKS 181

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D ++ S+L++ YS    +  A+ +FD+  DR+VV+W +++  Y + G    A ++F
Sbjct: 182 PCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVF 241

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E    SW                           ++P+E  L SV++ACA L AI 
Sbjct: 242 QVMLE----SW---------------------------VEPDEVTLASVISACASLSAIK 270

Query: 181 QGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG---------------- 223
            G  VH+   K   L  ++IL+ A VDMY+KC  +  A  +F+                 
Sbjct: 271 VGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGY 330

Query: 224 ---------------ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                          ++ ++  +WNA+I+G   NG+ +++L LF  + +    PT  TF 
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFA 390

Query: 269 AVLTTCTHAKMVRDGLN-----LFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
            +L  C     +  G+      L        G E  +     ++D+  + G VEE
Sbjct: 391 NILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445



 Score = 45.1 bits (105), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 32/138 (23%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+ Q  +   ++  + +MLD G +P++ T   ++ AC                    
Sbjct: 464 MIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSAC-------------------- 503

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G   FV      F S+    G A       P RD   +T MVD  G+ G  E A+ + 
Sbjct: 504 --GHAGFVEEGRHYFSSMTRDFGVA-------PLRD--HYTCMVDLLGRAGFLEEAKSII 552

Query: 121 EKMP-ERNAVSWSAIMAA 137
           E+MP + ++V W +++AA
Sbjct: 553 EEMPVQPDSVIWGSLLAA 570


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/441 (34%), Positives = 250/441 (56%), Gaps = 10/441 (2%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           Y++  FP+  +  + +M   G +PN  T   ++ AC  L  L++ G  +H   V+ G   
Sbjct: 154 YVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS-GKEIHGFAVRHGMVV 212

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           + FV S+L+  Y+    +  AR +FD  P RDVV+W  ++  Y K  ++E    LF KM 
Sbjct: 213 NLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKM- 271

Query: 125 ERNAV-----SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            R+ V     +W+A++         +E + +FR+MQ++G KPNE  + S+L AC+    +
Sbjct: 272 SRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENL 331

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H Y  R+    ++   TA++ MY+KCG ++ + +VF+ +  KD  AWN MI   
Sbjct: 332 RMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIAN 391

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G+ K++L LFD+M+ S  QP   TF  VL+ C+H+++V +G+ +F +M   + VEP 
Sbjct: 392 AMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPD 451

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
             HY+CVVD+ +RAG + EA KFI+   G      A+ WGALL+ACR+Y  +E+     +
Sbjct: 452 ANHYSCVVDIYSRAGRLNEAYKFIQ---GMPMEPTASAWGALLAACRVYKNVELAKISAK 508

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL E+   +   +V  +NI   A    EA++VR L+ E G+ K PGCS ++V   V  F+
Sbjct: 509 KLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFV 568

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
            GD  + ++ +IY  +   ++
Sbjct: 569 VGDKSNIESDKIYNFLDELVE 589



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 109/204 (53%), Gaps = 1/204 (0%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DV     ++  YGK    E AR +F+ +  R+ VSW+++ + Y +    ++ + +FR+M 
Sbjct: 112 DVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMG 171

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G+KPN   + S+L ACA L  +  G  +H +A R+ +  N+ + +A+V +Y+KC  V 
Sbjct: 172 WSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVR 231

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  VF+ + ++D  +WN +++    N + +K   LF +M + G +  E T+ AV+  C 
Sbjct: 232 EARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCM 291

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQ 299
                 + + +F  M  + G +P 
Sbjct: 292 ENGRSEEAVEMFRKMQKM-GFKPN 314



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 130/287 (45%), Gaps = 32/287 (11%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +GDF  AR+LF+ +P+ +  + S +++A +      E + ++  +QE G+KP+    ++ 
Sbjct: 25  VGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAA 84

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
             ACA  G   +   VH  A R  +  +V +  A++  Y KC  V  A  VF+ +  +D 
Sbjct: 85  AKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDV 144

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG------ 283
            +W ++ S     G  +K +++F  M  SG +P   T  ++L  C   K ++ G      
Sbjct: 145 VSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGF 204

Query: 284 -------LNLF--ENMSAVYGVEPQLEHYACVVDLLARAGMV------------EEAEK- 321
                  +NLF    + ++Y     +     V DL+    +V            +E EK 
Sbjct: 205 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKG 264

Query: 322 ---FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
              F++    G+   +A  W A++  C   G+ E    ++RK+ +MG
Sbjct: 265 FSLFLKMSRDGVRADEA-TWNAVIGGCMENGRSEEAVEMFRKMQKMG 310



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 34/240 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G M+    + +V  +  M  MGF+PN  T   ++ AC     L   G  +H +V + 
Sbjct: 286 VIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLR-MGKEIHCYVFRH 344

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D    ++LL  Y+    +  +R +FD    +DVV W TM+      G+ + A  LF
Sbjct: 345 WKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLF 404

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KM                          L  ++Q     PN      VL+ C+H   + 
Sbjct: 405 DKM--------------------------LLSRVQ-----PNSVTFTGVLSGCSHSRLVE 433

Query: 181 QGLWVHSYAKRYHL-EKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G+ + +   R HL E +    + VVD+YS+ G ++ A    +G+     A AW A+++ 
Sbjct: 434 EGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAA 493


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/483 (32%), Positives = 256/483 (53%), Gaps = 51/483 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY + + P+  V  YL ML    +P+ +TFP  +K       L++ G  +  H VK 
Sbjct: 78  MIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQH-GKELLNHAVKH 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM---------- 110
           GF  + FV  + +  +SL   +  A  +FD     +VVTW  M+ GY ++          
Sbjct: 137 GFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLL 196

Query: 111 ---------------------------------GDFENARELFEKMPERNAVSWSAIMAA 137
                                            G+ + A+ +F+ M  R+ VSW+A++  
Sbjct: 197 VLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDG 256

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y R++ F   L+LFR+MQ   +KP+E  +VS+L ACA LGA+  G WV +   +   + +
Sbjct: 257 YLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKND 316

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             +  A+VDMY KCG+V  A  VF+ +  KD   W  MI G+A+NG  +++L +F  M++
Sbjct: 317 SFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIE 376

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +   P E T++ VL  C    MV  G + F NM+  +G++P + HY C+VDLL   G +E
Sbjct: 377 ASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLE 432

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA   +E  +      ++ VWG+ L ACR++  +++ +   +++ E+   + + +VL  N
Sbjct: 433 EA---LEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCN 489

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           IY  +       +VRKL+ E G+KK PGCS++E+NG V EF+AGD  H Q+ EIY  + +
Sbjct: 490 IYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLEN 549

Query: 438 FLK 440
            ++
Sbjct: 550 MMQ 552



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 29/186 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H+H +K G   DP   + ++ F    H+ G                            +
Sbjct: 26  IHSHTIKMGLSSDPLFRNRVIAF-CCAHESG----------------------------N 56

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A ++F+ +P  +   W+ ++  YS+IS  +  +S++  M    +KP+       L  
Sbjct: 57  MNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKG 116

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
                A+  G  + ++A ++  + N+ +  A + M+S CG V  A  VF+     +   W
Sbjct: 117 FTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTW 176

Query: 233 NAMISG 238
           N M+SG
Sbjct: 177 NIMLSG 182



 Score = 42.0 bits (97), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 10/179 (5%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS--KCGHVHSALSVFEGI 224
           +S+L  C  +  + Q   +HS+  +  L  + +    V+      + G+++ A  VF+ I
Sbjct: 11  ISLLEKCKSMYQLKQ---IHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTI 67

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
            +     WN MI G +     +  + ++  M+ S  +P   TF   L   T    ++ G 
Sbjct: 68  PHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGK 127

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
            L  N +  +G +  L      + + +  G+V+ A K  +  MG     +   W  +LS
Sbjct: 128 ELL-NHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD--MG--DACEVVTWNIMLS 181


>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
          Length = 655

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 146/432 (33%), Positives = 248/432 (57%), Gaps = 4/432 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q    K ++  +  M + G  P+      ++ AC  +  L   G  +H++++  
Sbjct: 222 MLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLR-IGKAIHSYMLVS 280

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  + S+L+  Y+    M  A  L+++ P +D+V+ T MV GY +    E AR +F
Sbjct: 281 DMIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIF 340

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE++ VSWSA+++ Y   +   E LSLF  MQE G++ +E  ++SV++ACA+LG++ 
Sbjct: 341 DGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLD 400

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +  W+H++ K   L K + +  A++DM++KCG ++ AL+VF  +  K+   W +MIS  A
Sbjct: 401 KAKWIHAFIKNSGLNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFA 460

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+GD K SL LF++M   G +P E TF+++L  C HA +V +G  LF +M   YG+EP+ 
Sbjct: 461 MHGDGKSSLRLFEQMKDEGAEPNEVTFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKH 520

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RA +++EA   IE         +  +WG+LL+AC ++G +++G    +K
Sbjct: 521 EHYGCMVDLLGRAKLMQEAVSLIESMH---LEPNVPIWGSLLAACWMHGDLKLGAFAAKK 577

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + ++        VL   IY ++     A +VR ++    + K+ G S +E+N    EF A
Sbjct: 578 ILQLDPNHDGASVLLLKIYMKSDNLNNAQEVRGVMKLHRVSKETGLSWMELNEPFHEFAA 637

Query: 421 GDNRHAQAGEIY 432
           G  +H ++G+I+
Sbjct: 638 GGEKHPESGKIF 649



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 158/372 (42%), Gaps = 73/372 (19%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFV---HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           P     P L+++       E  G +V   HA  V+ G  +D FV ++L   Y+    +  
Sbjct: 147 PGPRALPALLRSA---ARCEGAGAYVAATHALAVRTGALDDGFVGTALAGAYAACGCVRD 203

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
            R +FD    RDVV+W  M+D Y +  +++                              
Sbjct: 204 TRKVFDGMAVRDVVSWGVMLDSYCQTRNYK------------------------------ 233

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY---------------- 188
            E L LF +M+  G+ P++  L +VL AC H+  +  G  +HSY                
Sbjct: 234 -EALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSAL 292

Query: 189 ------------AKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
                       A++ + E   K+++ +TA+V  Y++   V  A S+F+G+  KD  +W+
Sbjct: 293 ISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWS 352

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMISG   +    ++L LF+ M + G +  E T ++V++ C +   + D           
Sbjct: 353 AMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSL-DKAKWIHAFIKN 411

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            G+   L     ++D+ A+ G +  A     E    +   +   W +++SA  ++G  + 
Sbjct: 412 SGLNKVLHICNALIDMFAKCGGINLALNVFNE----MPLKNVITWTSMISAFAMHGDGKS 467

Query: 354 GNRVWRKLAEMG 365
             R++ ++ + G
Sbjct: 468 SLRLFEQMKDEG 479



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 13/235 (5%)

Query: 147 VLSLFRQMQEVGMK-PNESGLVSVLTACAHL-GAITQGLWVHSYAKRYHLEKNVILATAV 204
           VL+    ++  G+  P    L ++L + A   GA       H+ A R     +  + TA+
Sbjct: 132 VLAACACLRRAGLPAPGPRALPALLRSAARCEGAGAYVAATHALAVRTGALDDGFVGTAL 191

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
              Y+ CG V     VF+G++ +D  +W  M+       + K++L LF +M  SG  P +
Sbjct: 192 AGAYAACGCVRDTRKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQ 251

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENM---SAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
                VL  C H + +R G  +   M     + G        + ++ L A    +E AEK
Sbjct: 252 LILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHIS----SALISLYASCANMEMAEK 307

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
              E    +   D     A++S      K+E+   ++  + E  +  +S  +  Y
Sbjct: 308 LYNE----MPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGY 358


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/442 (34%), Positives = 241/442 (54%), Gaps = 39/442 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  ++ P  ++  Y DM   G  PN+YTF  ++KAC  L  L   G  +H+ +VK 
Sbjct: 78  IIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCE-GQELHSQIVKV 136

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  +V+ L++ Y+    M  A  +FD+                             
Sbjct: 137 GLDFETPLVNGLIKLYAACGCMDYACVMFDE----------------------------- 167

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPE ++ SWS +++ Y++     E L LFR+MQ   +  +   L SV+  C  LGA+ 
Sbjct: 168 --MPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALD 225

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHSY  +  ++ +V+L TA+V MYSKCG + +AL VF+G++ +D  AW+ MI+G A
Sbjct: 226 LGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYA 285

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +K+L+LFD M +S T P   TF +VL+ C+H+ +V  G  +FE M   Y + PQ+
Sbjct: 286 IHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQI 345

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVW 358
           +HY C+VDL  RAGMV  A KFI+         + NV  W  LL AC+ +G  ++G  + 
Sbjct: 346 KHYGCMVDLFCRAGMVGHAHKFIQTM-----PIEPNVVLWRTLLGACKTHGYKDLGEHIS 400

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           RK+ ++  +    +VL  N+Y   G      +VR L+ +   KK+ G S IE+N +V +F
Sbjct: 401 RKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKF 460

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
           + GD  H +  +IY ++H   +
Sbjct: 461 IMGDESHPEREKIYGMLHQMAR 482



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 48/334 (14%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLE--FYSL 78
           MLD G      +    IK C  +G L+     + AH+V+    +D F+ S L+E    +L
Sbjct: 4   MLDQG------SLVAAIKRCTRVGDLKA----IQAHMVRANLTQDTFLTSKLIESSAVTL 53

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
              +  A  +F  +   ++  W T++ GY                    ++S S I A  
Sbjct: 54  SGHVAYAHRIFSCTHHPNLFMWNTIIRGY--------------------SISDSPITA-- 91

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV 198
                    ++L+R M   G+ PN      VL AC  L  + +G  +HS   +  L+   
Sbjct: 92  ---------IALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFET 142

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            L   ++ +Y+ CG +  A  +F+ +   D+ +W+ M+SG A NG A ++L+LF  M   
Sbjct: 143 PLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAE 202

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
                  T  +V+  C     +  G  +   M    GV+  +     +V + ++ G ++ 
Sbjct: 203 NVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDK-EGVKIDVVLGTALVGMYSKCGSLDN 261

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           A K  +    G+   D   W  +++   I+G  E
Sbjct: 262 ALKVFQ----GMAERDVTAWSTMIAGYAIHGHGE 291


>gi|357120906|ref|XP_003562165.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic-like [Brachypodium distachyon]
          Length = 529

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/426 (36%), Positives = 226/426 (53%), Gaps = 10/426 (2%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL---ENFGMFVHAHVV 58
           IR       P  +V  +LDML     P   TFP L  +   LG     +  G  +H  V+
Sbjct: 107 IRALSDGPGPDAAVALFLDMLRSPTPPERRTFPSLFASYARLGVRADDDGAGAALHGMVL 166

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENAR 117
           K G   D +V +S++  Y+   +   A  L+ +     DVV   + +    + G  + AR
Sbjct: 167 KLGLAGDAYVRNSMIAMYASWGRADEALLLYGQCGQAFDVVACNSAIVALTRAGRVDEAR 226

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           E+F+ MP R   +WSA+++AYSR +  ++ + LF  MQ  G++PN + LVSVL  CA LG
Sbjct: 227 EVFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQASGVEPNANVLVSVLGCCAALG 286

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNA 234
           A+ QG WVH+Y  ++ +  N ++ TA+VDMY KCG +H A  VF+   ++      +WNA
Sbjct: 287 ALEQGAWVHAYIDKHGVAMNALVVTALVDMYCKCGSIHKARHVFDASRSQGLAKLSSWNA 346

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M+ G+A++G  +++L LF  +   G  P   TF+ +L    H+ M  +   LF  M   Y
Sbjct: 347 MMLGLAVHGQCQEALALFSELETYGLSPDNVTFITILMAYGHSGMADEAKALFSAMEREY 406

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            V P +EHY C+VD LARAG + EAE  I          D  +WGALLS CR++G  E G
Sbjct: 407 AVTPGIEHYGCLVDALARAGRLGEAEDVIRTMP---MRPDTAIWGALLSGCRLHGDAEAG 463

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
            R      E    D   +VL+ ++    G       VR+ +   G+ K PGCS+IEVNGV
Sbjct: 464 ARAASGAMECDPQDSGAYVLAASVLARDGEVGAGVSVRERMRVEGVAKVPGCSMIEVNGV 523

Query: 415 VEEFLA 420
           V EF++
Sbjct: 524 VHEFVS 529



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 85/423 (20%), Positives = 150/423 (35%), Gaps = 79/423 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H  +VK G  +DP   S ++ F +                              GK  D
Sbjct: 55  LHGALVKSGLAKDPIAASRVVAFLA------------------------------GKGRD 84

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  L    P  NA  W+  + A S        ++LF  M      P      S+  +
Sbjct: 85  VAYAARLVRHHPRPNAFMWNTAIRALSDGPGPDAAVALFLDMLRSPTPPERRTFPSLFAS 144

Query: 173 CAHLGAITQ----GLWVHSYAKRYHLEKNVILATAVVDMY-------------------- 208
            A LG        G  +H    +  L  +  +  +++ MY                    
Sbjct: 145 YARLGVRADDDGAGAALHGMVLKLGLAGDAYVRNSMIAMYASWGRADEALLLYGQCGQAF 204

Query: 209 ------------SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
                       ++ G V  A  VF+ +  +    W+AM+S  +     + ++ELF  M 
Sbjct: 205 DVVACNSAIVALTRAGRVDEAREVFDAMPARTVATWSAMVSAYSRAARCQDAVELFSAMQ 264

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
            SG +P     V+VL  C     +  G  +   +   +GV         +VD+  + G +
Sbjct: 265 ASGVEPNANVLVSVLGCCAALGALEQGAWVHAYIDK-HGVAMNALVVTALVDMYCKCGSI 323

Query: 317 EEAEK-FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVL 374
            +A   F   +  GL     + W A++    ++G+ +    ++ +L   G++ D  T + 
Sbjct: 324 HKARHVFDASRSQGL--AKLSSWNAMMLGLAVHGQCQEALALFSELETYGLSPDNVTFIT 381

Query: 375 SYNIYKEAGWDMEANKVRKLIS--ETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
               Y  +G    A++ + L S  E      PG   IE  G + + LA   R  +A ++ 
Sbjct: 382 ILMAYGHSGM---ADEAKALFSAMEREYAVTPG---IEHYGCLVDALARAGRLGEAEDVI 435

Query: 433 RVI 435
           R +
Sbjct: 436 RTM 438


>gi|413937828|gb|AFW72379.1| hypothetical protein ZEAMMB73_412000 [Zea mays]
          Length = 471

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/425 (34%), Positives = 236/425 (55%), Gaps = 9/425 (2%)

Query: 18  YLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG--EDPFVVSSLLE 74
           +L ML  G   PN + +P +++A   +         +H+H  K GF   E   + +SLL+
Sbjct: 46  FLRMLRHGRPSPNQFVYPLVLRAACAVDV--RIVRSIHSHACKSGFCGYEYDVIRTSLLD 103

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
            YS    M  AR LFD   +R VV+WT +V GY + G   +A  LFE+M ER+  +W+AI
Sbjct: 104 CYSRHAMMADARKLFDGLTERSVVSWTALVSGYARAGKIGDAIMLFERMTERDVAAWNAI 163

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           +   S+   F E + +F +M   G++PN + +  VL+AC HLG +  G  +H  A R  +
Sbjct: 164 ITGCSQNRLFAEAVGIFGRMVGTGLRPNATTISCVLSACGHLGMLKIGKLIHCCAWRTCV 223

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
                +   ++DMY KCG++  A  +F  +S++   AWN++I+ +A++G +K ++ +F+ 
Sbjct: 224 GFGSSVLNGLIDMYGKCGNLEGATWIFYEVSDRSLTAWNSLINCLALHGHSKCAISVFNE 283

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           M   G +P   TFV +L  CTH   V +G+  FE M   +G+EP++EHY C+++LL RAG
Sbjct: 284 MRGEGVEPDVITFVGLLNACTHGGFVDEGIKYFELMQHEHGIEPEIEHYGCIINLLGRAG 343

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
             ++A   I          D  +WG+LL+ACR++  +E+     RKL E+   + +  V+
Sbjct: 344 RFQDALNVISNMR---IESDEVIWGSLLNACRVHRNVELAELAIRKLLELDPNNANYVVM 400

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
             N+Y E G   E  K RK + E  + KK PGCS IEV+  +  F +GD+ H+++  IY 
Sbjct: 401 LANVYSEGGLWEEVRKARKFMEEENIGKKLPGCSWIEVDRKIHRFYSGDDAHSESENIYD 460

Query: 434 VIHSF 438
            +   
Sbjct: 461 TLEDL 465



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/210 (26%), Positives = 95/210 (45%), Gaps = 44/210 (20%)

Query: 117 RELFEKMPERNAVSW---------SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
           R LF+  P  N   +         +A  A+ S  +  ++ L+LF +M   G +P+ +  V
Sbjct: 3   RHLFDATPHPNVFLYSAILSAYASAAAAASPSSYAHARDALALFLRMLRHG-RPSPNQFV 61

Query: 168 SVLT---ACA---------HLGAITQGLWVHSYA----------KRYHL----------- 194
             L    ACA         H  A   G   + Y            R+ +           
Sbjct: 62  YPLVLRAACAVDVRIVRSIHSHACKSGFCGYEYDVIRTSLLDCYSRHAMMADARKLFDGL 121

Query: 195 -EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            E++V+  TA+V  Y++ G +  A+ +FE ++ +D  AWNA+I+G + N    +++ +F 
Sbjct: 122 TERSVVSWTALVSGYARAGKIGDAIMLFERMTERDVAAWNAIITGCSQNRLFAEAVGIFG 181

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           RMV +G +P  TT   VL+ C H  M++ G
Sbjct: 182 RMVGTGLRPNATTISCVLSACGHLGMLKIG 211


>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
          Length = 545

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 152/427 (35%), Positives = 239/427 (55%), Gaps = 6/427 (1%)

Query: 6   MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           +  ++  +SVF +   +  G  P+ +     + A   LG  +  G  VH  + + G   +
Sbjct: 97  LDHHWKAISVFSH--AIASGHRPDGFAAVGALSASGGLGD-QRIGSVVHGLIFRCGLDSE 153

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
             V ++L++ Y    K   AR +FD+   +D VTW +M+ GY K    ++A   F +MP 
Sbjct: 154 LVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPM 213

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           ++ VSW+A++  + +     + L LF +M   G +PN   +V VL+ACA +GA+  G  +
Sbjct: 214 KSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAI 273

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
           H Y  + +   N+I+  A++DMY+K G + SA SVFE +  KDA  W  MIS   + G+ 
Sbjct: 274 HGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNG 333

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
           +K++ELF  M++SG  P   TFV+VL+ C+HA ++++G  LF+ M  VY ++P+LEHY C
Sbjct: 334 RKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGC 393

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           +VDLL R G++EEAE  I+         D  +W +LLSAC  +G   +     +++ +  
Sbjct: 394 MVDLLGRGGLLEEAEALIDHMD---VEPDIVIWRSLLSACLAHGNDRLAEIAGKEIIKRE 450

Query: 366 ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
             D   +VL +N+Y  +    EA  +RK +    + KKPGCS IEV+GVV EFL  D  H
Sbjct: 451 PGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVHEFLVEDKSH 510

Query: 426 AQAGEIY 432
               EIY
Sbjct: 511 DARREIY 517



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 36/274 (13%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y + G   +A  LF+++P  + +S++++M+ + ++    + +S+F      G +P+    
Sbjct: 63  YAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAA 122

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH------------- 213
           V  L+A   LG    G  VH    R  L+  +++  A+VDMY +CG              
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLV 182

Query: 214 ------------------VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
                             V SALS F  +  K   +W A+I+G   +    ++LELF +M
Sbjct: 183 KDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKM 242

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           +  G +P   T V VL+ C     +  G  +    S        +   A ++D+ A++G 
Sbjct: 243 LLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNA-LMDMYAKSGS 301

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +  A    EE    +   DA  W  ++S+  + G
Sbjct: 302 IASAFSVFEE----VQMKDAFTWTTMISSFTVQG 331



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++Q   P  ++  +  ML  G  PN+ T   ++ AC  +G L + G  +H +  K 
Sbjct: 222 LITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGAL-DLGRAIHGYGSKS 280

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  V ++L++ Y+    + +A ++F++   +D  TWTTM+  +   G+   A ELF
Sbjct: 281 NATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF 340

Query: 121 EKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157
             M       N+V++ ++++A S     +E   LF +M+EV
Sbjct: 341 WDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREV 381


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 245/433 (56%), Gaps = 6/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY QA   + +   +  M   G   + +T   L+ AC   G LE FG  VH+H++  
Sbjct: 182 MINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE-FGKLVHSHLLVR 240

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  + ++L++ Y     +  A   FD  P ++ V+WT+M+    K    + AR+ F
Sbjct: 241 GCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWF 300

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++PE++ +SW+A+++ Y +   F E L L+ +M+ +G+ P+E  L +VL+AC  LG + 
Sbjct: 301 EQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLA 360

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H   +       V L  +++DMY++CG V +A+S+F  + +K+  +WNA+I  +A
Sbjct: 361 SGKMIHDCIRDNFHNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALA 420

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A+ +L  F  MV     P E TFVA+L+ C H  ++  G   F+ M  VY V+P +
Sbjct: 421 MHGRAQDALMFFRSMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGV 480

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL R G + +A   I++        D  VWGALL ACRI+G I++G +V ++
Sbjct: 481 EHYACMVDLLGRGGQLAKAVDLIKDMP---MRPDVVVWGALLGACRIHGHIQIGKQVIKQ 537

Query: 361 LAEM-GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+ G++     ++S  +Y+   W+ +  ++RKL+ E GMKK  G S IE N  + E  
Sbjct: 538 LLELEGMSGGLFVLISNMLYETHQWE-DMKRLRKLMREWGMKKNMGVSSIETNSNIHESG 596

Query: 420 AGDNRHAQAGEIY 432
           A    H  + ++Y
Sbjct: 597 AEGIGHESSDDMY 609



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 171/390 (43%), Gaps = 82/390 (21%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y  ++ P+ ++     M+  G  PN +T P L+KAC  +   E+  M  H  VVK 
Sbjct: 81  LIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHV-MVTHGVVVKL 139

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV ++LL  Y+    +G +R  FD+  DR+VV+W +M++GY + G         
Sbjct: 140 GFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAG--------- 190

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                 + +E  SLF  M+  G+  +E  LVS+L AC+  G + 
Sbjct: 191 ----------------------NTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLE 228

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCG---------------------------- 212
            G  VHS+        ++ILA A+VDMY KCG                            
Sbjct: 229 FGKLVHSHLLVRGCRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALA 288

Query: 213 ---HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
               + +A   FE I  K   +WNAMIS     G   ++L+L++RM   G  P E T  A
Sbjct: 289 KRASIDAARDWFEQIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAA 348

Query: 270 VLTTCTH------AKMVRDGL-NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           VL+ C         KM+ D + + F N        P +  +  ++D+ AR G V+ A   
Sbjct: 349 VLSACGQLGDLASGKMIHDCIRDNFHN--------PGVALFNSLLDMYARCGQVDTAISL 400

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             E    +   +   W A++ A  ++G+ +
Sbjct: 401 FSE----MPSKNVISWNAIIGALAMHGRAQ 426



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 119/261 (45%), Gaps = 5/261 (1%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR+LF+++P+ +   +++++ AY      +E L L R M   G+ PNE  L  +L ACA 
Sbjct: 63  ARQLFDRIPDPDRFVYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACAR 122

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           + A    +  H    +      V +  A++  Y+  G +  +   F+ + +++  +WN+M
Sbjct: 123 VQAWEHVMVTHGVVVKLGFVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSM 182

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A  G+ +++  LF+ M + G    E T V++L  C+    +  G  L  +   V G
Sbjct: 183 INGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFG-KLVHSHLLVRG 241

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
               L     +VD+  + G +  A    +     +   +A  W ++L A      I+   
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDM----MPFKNAVSWTSMLCALAKRASIDAAR 297

Query: 356 RVWRKLAEMGITDFSTHVLSY 376
             + ++ E  I  ++  +  Y
Sbjct: 298 DWFEQIPEKSIISWNAMISCY 318


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 149/444 (33%), Positives = 244/444 (54%), Gaps = 43/444 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RGY + + P  ++     +L  G  P++YTF  L+KAC  L  LE  G  +H   VK 
Sbjct: 106 MARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLLKACARLKALEE-GKQLHCLAVKL 164

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G++ +V  +L+  Y+                                  D + AR +F
Sbjct: 165 GVGDNMYVCPTLINMYT-------------------------------ACNDVDAARRVF 193

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +K+ E   V+++AI+ + +R S   E L+LFR++QE G+KP +  ++  L++CA LGA+ 
Sbjct: 194 DKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALD 253

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H Y K+   ++ V + TA++DMY+KCG +  A+SVF+ +  +D  AW+AMI   A
Sbjct: 254 LGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYA 313

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   +++ +   M K+  QP E TF+ +L  C+H  +V +G   F +M+  YG+ P +
Sbjct: 314 THGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSI 373

Query: 301 EHYACVVDLLARAGMVEEAEKFIEE---KMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +HY C++DLL RAG +EEA KFI+E   K   +      +W  LLS+C  +G +E+   V
Sbjct: 374 KHYGCMIDLLGRAGRLEEACKFIDELPIKPTPI------LWRTLLSSCSSHGNVEMAKLV 427

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            +++ E+  +    +V+  N+    G WD + N +RK++ + G  K PGCS IEVN VV 
Sbjct: 428 IQRIFELDDSHGGDYVILSNLCARNGRWD-DVNHLRKMMVDKGALKVPGCSSIEVNNVVH 486

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLK 440
           EF +GD  H+ +  ++  +   +K
Sbjct: 487 EFFSGDGVHSTSTILHHALDELVK 510



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 127/255 (49%), Gaps = 8/255 (3%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +   ++A  +F+K+P+ + V ++ +   Y+R  D    + L  Q+   G+ P++    S+
Sbjct: 82  IASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSL 141

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L ACA L A+ +G  +H  A +  +  N+ +   +++MY+ C  V +A  VF+ I     
Sbjct: 142 LKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCV 201

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            A+NA+I+  A N    ++L LF  + +SG +PT+ T +  L++C     +  G  + E 
Sbjct: 202 VAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIHEY 261

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +    G +  ++    ++D+ A+ G +++A    ++    +   D   W A++ A   +G
Sbjct: 262 VKK-NGFDQYVKVNTALIDMYAKCGSLDDAVSVFKD----MPRRDTQAWSAMIVAYATHG 316

Query: 350 KIEVGNRVWRKLAEM 364
               G++    L EM
Sbjct: 317 H---GSQAISMLREM 328


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 245/436 (56%), Gaps = 18/436 (4%)

Query: 6   MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           M A F K+   C   + D   + +  ++  LI   V  G ++N G      + K     D
Sbjct: 132 MYAKFGKMD--CARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEK-----D 184

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
               +++++ Y  +  M +AR LFD+ P+R VV+WT M+ GY   G+ ++AR LF+ MPE
Sbjct: 185 SAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPE 244

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAITQGLW 184
           +N  SW+A+++ Y +     E L LF +MQ    ++P+E  +VSVL A A LGA+  G W
Sbjct: 245 KNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGW 304

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH + +R  L++   + TA++DMY+KCG +  +  VF+ +  K+  +WNA+I+  A+NG 
Sbjct: 305 VHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGR 364

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           AK++L LF  M   G  P E T + VL+ C H+ +V +G   F+ M   +G+ P++EHY 
Sbjct: 365 AKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYG 423

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C+VDLL RAG ++EAEK +E       G    +  + L AC     +    RV ++  +M
Sbjct: 424 CMVDLLGRAGCLQEAEKLMESMPYEANG---IILSSFLFACGYSKDVARAERVLKEAIKM 480

Query: 365 GITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
              +   +++  N+Y  E  W  EA++V+ L+   G+KK+ GCS IEV+  V EF+AGD 
Sbjct: 481 EAWNDGNYIMLRNLYANEKRWK-EADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDR 539

Query: 424 RHAQAGEIYRVIHSFL 439
            H +    +  IHS L
Sbjct: 540 VHPK----WEAIHSVL 551



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 107 YGKMGDFENARELFEKMPERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
           Y  +    +AR +F+  P R+ A   ++++ AY  +  + E  +L+R ++       +S 
Sbjct: 30  YDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSF 89

Query: 166 LVSVLT-ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
             SVL  +CA   AI +G  +HS+        ++  ATA+VDMY+K G +  A  +F+ +
Sbjct: 90  TFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEM 149

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET---TFVAVLTTCTHAKM 279
            ++   +W A+I G   +GD   + +LFD+M++  +    T    +V +   C+  K+
Sbjct: 150 IDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKL 207


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 247/444 (55%), Gaps = 39/444 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q+   + ++ C+ +M +    PN  T   ++ AC      E  G ++ + V   
Sbjct: 234 MISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE-LGKWIGSWVRDN 292

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  + ++L                               +D Y K G+ + ARELF
Sbjct: 293 GFGSNLQLTNAL-------------------------------IDMYCKCGETDIARELF 321

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + + E++ +SW+ ++  YS +S ++E L+LF  M    +KPN+   + +L ACA LGA+ 
Sbjct: 322 DGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALD 381

Query: 181 QGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            G WVH+Y  K      N  L T+++DMY+KCG + +A  VF  + +++  +WNAM+SG 
Sbjct: 382 LGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGF 441

Query: 240 AMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           AM+G A+++L LF  MV  G  +P + TFV VL+ CT A +V  G   F +M   YG+ P
Sbjct: 442 AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISP 501

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +L+HY C++DLLARA   EEAE  ++         D  +WG+LLSAC+ +G++E G  V 
Sbjct: 502 KLQHYGCMIDLLARAEKFEEAEILMKNMEME---PDGAIWGSLLSACKAHGRVEFGEYVA 558

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            +L ++   +    VL  NIY  AG WD +  ++R  +++ GMKK PGC+ IE++G V E
Sbjct: 559 ERLFQLEPENAGAFVLLSNIYAGAGRWD-DVARIRTRLNDKGMKKVPGCTSIEIDGDVHE 617

Query: 418 FLAGDNRHAQAGEIYRVIHSFLKM 441
           FL GD  H +   IY++++   K+
Sbjct: 618 FLVGDKFHPECNNIYKMLNEVDKL 641



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 220/424 (51%), Gaps = 12/424 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  ++ P  S+  +  ML  G +PN++TFP L K+C         G  +HAH +K 
Sbjct: 102 LIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHE-GKQLHAHALKL 160

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +P V +S++  Y+ V +M  AR +FDKS  RD V++T ++ GY   G  ++AR LF
Sbjct: 161 ALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLF 220

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y +   F+E +  F +MQE  + PN+S +V VL+AC H  +  
Sbjct: 221 DEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE 280

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+ S+ +      N+ L  A++DMY KCG    A  +F+GI  KD  +WN MI G +
Sbjct: 281 LGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYS 340

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
                +++L LF+ M++S  +P + TF+ +L  C     +  G  +   +          
Sbjct: 341 YLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNA 400

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
             +  ++D+ A+ G +E AE+        +   +   W A+LS   ++G  E    ++ +
Sbjct: 401 SLWTSLIDMYAKCGCIEAAERVFR----SMHSRNLASWNAMLSGFAMHGHAERALALFSE 456

Query: 361 LAEMGI--TDFSTHVLSYNIYKEAGW-DMEANKVRKLISETGMKKKP---GCSVIEVNGV 414
           +   G+   D  T V   +   +AG  D+     R +I + G+  K    GC +I++   
Sbjct: 457 MVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGC-MIDLLAR 515

Query: 415 VEEF 418
            E+F
Sbjct: 516 AEKF 519



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 109/273 (39%), Gaps = 65/273 (23%)

Query: 42  ILGPLENFGMF--VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVT 99
           +L   +N   F  +H+ ++K G     FV S L+ F ++             SP      
Sbjct: 34  LLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAV-------------SPS----- 75

Query: 100 WTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
                      GD   A  LFE+  +    N   W++++  YS  S     L LF +M  
Sbjct: 76  -----------GDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLY 124

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH--- 213
            G++PN      +  +C    A  +G  +H++A +  L  N  + T+V+ MY+  G    
Sbjct: 125 YGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDF 184

Query: 214 ----------------------------VHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
                                       +  A  +F+ I  KD  +WNAMISG   +G  
Sbjct: 185 ARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRF 244

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278
           ++++  F  M ++   P ++T V VL+ C H +
Sbjct: 245 EEAIVCFYEMQEANVLPNKSTMVVVLSACGHTR 277


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 245/436 (56%), Gaps = 18/436 (4%)

Query: 6   MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           M A F K+   C   + D   + +  ++  LI   V  G ++N G      + K     D
Sbjct: 306 MYAKFGKMD--CARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEK-----D 358

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
               +++++ Y  +  M +AR LFD+ P+R VV+WT M+ GY   G+ ++AR LF+ MPE
Sbjct: 359 SAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPE 418

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAITQGLW 184
           +N  SW+A+++ Y +     E L LF +MQ    ++P+E  +VSVL A A LGA+  G W
Sbjct: 419 KNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGW 478

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH + +R  L++   + TA++DMY+KCG +  +  VF+ +  K+  +WNA+I+  A+NG 
Sbjct: 479 VHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGR 538

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           AK++L LF  M   G  P E T + VL+ C H+ +V +G   F+ M   +G+ P++EHY 
Sbjct: 539 AKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEE-FGLTPKIEHYG 597

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C+VDLL RAG ++EAEK +E       G    +  + L AC     +    RV ++  +M
Sbjct: 598 CMVDLLGRAGCLQEAEKLMESMPYEANG---IILSSFLFACGYSKDVARAERVLKEAIKM 654

Query: 365 GITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
              +   +++  N+Y  E  W  EA++V+ L+   G+KK+ GCS IEV+  V EF+AGD 
Sbjct: 655 EAWNDGNYIMLRNLYANEKRWK-EADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDR 713

Query: 424 RHAQAGEIYRVIHSFL 439
            H +    +  IHS L
Sbjct: 714 VHPK----WEAIHSVL 725



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 107 YGKMGDFENARELFEKMPERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
           Y  +    +AR +F+  P R+ A   ++++ AY  +  + E  +L+R ++       +S 
Sbjct: 204 YDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSF 263

Query: 166 LVSVLT-ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
             SVL  +CA   AI +G  +HS+        ++  ATA+VDMY+K G +  A  +F+ +
Sbjct: 264 TFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFGKMDCARKLFDEM 323

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET---TFVAVLTTCTHAKM 279
            ++   +W A+I G   +GD   + +LFD+M++  +    T    +V +   C+  K+
Sbjct: 324 IDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKL 381


>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1401

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 138/382 (36%), Positives = 234/382 (61%), Gaps = 6/382 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVIL--GPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           +++M      P+ +T+P + KAC     G L +    +H   ++FG   D F +++L+  
Sbjct: 517 FVEMRRRSVPPDFHTYPFVFKACAAKKNGDL-SLVKTLHCQALRFGLLSDLFTLNTLIRA 575

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           YSL+  +G+A  LFD++P RDVVT+  ++DG  K  +   ARELF+ MP R+ VSW++++
Sbjct: 576 YSLMAPIGSALQLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLI 635

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           A Y++++  +E +SLF +M  +G+KP+   +VS L+ACA  G + +G  +H Y K+  L 
Sbjct: 636 AGYAQMNQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLF 695

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +  LAT +VD Y+KCG + +A+ +F   S+K    WNAMI+G+AM+G+ + +++ F +M
Sbjct: 696 IDSFLATGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKM 755

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           V SG +P   +F++VL  C+H+ +V +   LF+ M ++Y V+ +++HY C+ DLL RAG+
Sbjct: 756 VSSGIKPDGVSFISVLVGCSHSGLVGEARKLFDQMRSLYDVDREMKHYGCMADLLGRAGL 815

Query: 316 VEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           +EEA + IE+ M   GG    +  W  LL  CRI+G IEV  +  +++  +   D   + 
Sbjct: 816 IEEAAEMIEQ-MPKDGGKREKLLAWSGLLGGCRIHGNIEVAEKAAKRVKALSPEDGGVYK 874

Query: 374 LSYNIYKEAGWDMEANKVRKLI 395
           +   +Y  A    +  KVR++I
Sbjct: 875 VMVEMYANAERWEDVVKVREMI 896



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 108/251 (43%), Gaps = 40/251 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N  + ++  + +M+ +G +P+N      + AC   G LE  G  +H +  K 
Sbjct: 634 LIAGYAQMNQCREAISLFDEMIGLGLKPDNVAIVSTLSACAQSGDLEK-GKAIHDYTKKK 692

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D F+ + L++FY+    + TA  +F  S D+ + TW  M+ G    G+ E   + F
Sbjct: 693 RLFIDSFLATGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLAMHGNGELTVDYF 752

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM     VS                           G+KP+    +SVL  C+H G + 
Sbjct: 753 HKM-----VS--------------------------SGIKPDGVSFISVLVGCSHSGLVG 781

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG------AWN 233
           +   +    +  Y +++ +     + D+  + G +  A  + E +  KD G      AW+
Sbjct: 782 EARKLFDQMRSLYDVDREMKHYGCMADLLGRAGLIEEAAEMIEQMP-KDGGKREKLLAWS 840

Query: 234 AMISGVAMNGD 244
            ++ G  ++G+
Sbjct: 841 GLLGGCRIHGN 851


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 151/442 (34%), Positives = 246/442 (55%), Gaps = 9/442 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q      +++ Y +    G + N ++F  L+ ACV    L+      H  V+  
Sbjct: 150 MVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQ-LNRQAHGQVLVA 208

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  +  S+++ Y+   +M +A+  FD+   +D+  WTT++ GY K+GD E A +LF
Sbjct: 209 GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLF 268

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPE+N VSW+A++A Y R       L LFR+M  +G+KP +    S L A A + ++ 
Sbjct: 269 CEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLR 328

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGV 239
            G  +H Y  R ++  N I+ ++++DMYSK G + ++  VF    +K D   WN MIS +
Sbjct: 329 HGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISAL 388

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G   K+L + D M+K   QP  TT V +L  C+H+ +V +GL  FE+M+  +G+ P 
Sbjct: 389 AQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPD 448

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHYAC++DLL RAG  +E  + IEE        D ++W A+L  CRI+G  E+G +   
Sbjct: 449 QEHYACLIDLLGRAGCFKELMRKIEEMP---FEPDKHIWNAILGVCRIHGNEELGKKAAD 505

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L ++     + ++L  +IY + G W++   K+R ++ +  + K+   S IE+   VE F
Sbjct: 506 ELIKLDPESSAPYILLSSIYADHGKWEL-VEKLRGVMKKRRVNKEKAVSWIEIEKKVEAF 564

Query: 419 LAGDNRHAQAG--EIYRVIHSF 438
              D  HA A   EIY ++H+ 
Sbjct: 565 TVSDGSHAHARKEEIYFILHNL 586



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 158/350 (45%), Gaps = 45/350 (12%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSS-LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG 108
           G ++H H+   GF     ++S+ L+  Y    K   A  +FD+   R++ +W  MV GY 
Sbjct: 65  GKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYV 124

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           K G    AR +F+ MPER+ VSW+ ++  Y++  +  E L  +++ +  G+K NE     
Sbjct: 125 KSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAG 184

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +LTAC     +      H          NV+L+ +++D Y+KCG + SA   F+ ++ KD
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 229 AGAWNAMISGVAMNGD-------------------------------AKKSLELFDRMVK 257
              W  +ISG A  GD                                 ++L+LF +M+ 
Sbjct: 245 IHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIA 304

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + TF + L        +R G  +   M     V P     + ++D+ +++G +E
Sbjct: 305 LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRT-NVRPNAIVISSLIDMYSKSGSLE 363

Query: 318 EAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            +E   +  ++K       D   W  ++SA   +G   +G++  R L +M
Sbjct: 364 ASERVFRICDDK------HDCVFWNTMISALAQHG---LGHKALRMLDDM 404


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  274 bits (701), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 146/432 (33%), Positives = 241/432 (55%), Gaps = 37/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q + P+ ++  YL M D G +P+ +T   L+ AC  +  L ++G  +H   ++ 
Sbjct: 281 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSL-HYGEEIHGFALRN 339

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DPF+  SLL  Y    K   A+ LFD                              
Sbjct: 340 GLAVDPFIGISLLSLYICCGKPFAAQVLFDG----------------------------- 370

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             M  R+ VSW+ ++A YS+     E ++LFRQM   G++P E  ++ V  AC+ L A+ 
Sbjct: 371 --MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALR 428

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H +A + HL +++ ++++++DMY+K G +  +  +F+ +  KD  +WN +I+G  
Sbjct: 429 LGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 488

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  K++LELF++M++ G +P + TF  +L  C+HA +V DGL  F  M  ++ +EP+L
Sbjct: 489 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 548

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY CVVD+L RAG +++A + IEE     G  D+ +W +LLS+CRI+G + +G +V  K
Sbjct: 549 EHYTCVVDMLGRAGRIDDALRLIEEMP---GDPDSRIWSSLLSSCRIHGNLGLGEKVANK 605

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+       +VL  N++  +G WD +  +VR  + + G++K  GCS IEV G V  FL
Sbjct: 606 LLELEPEKPENYVLISNLFAGSGKWD-DVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 664

Query: 420 AGDNRHAQAGEI 431
            GD    +  E+
Sbjct: 665 IGDEMLPELEEV 676



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 166/351 (47%), Gaps = 48/351 (13%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           +P+N+T P +IKAC              A ++  G G+             ++H M T  
Sbjct: 205 KPDNFTLPCVIKAC--------------AGLLDLGLGQ-------------IIHGMATKM 237

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENA-RELFEKMPERNAVSWSAIMAAYSRISDFK 145
            L       DV     ++  YGK G  E A + +F+ M  +   SW+A++  Y++ SD +
Sbjct: 238 DLVS-----DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPR 292

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + L L+ QM + G+ P+   + S+L AC+ + ++  G  +H +A R  L  +  +  +++
Sbjct: 293 KALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL 352

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
            +Y  CG   +A  +F+G+ ++   +WN MI+G + NG   +++ LF +M+  G QP E 
Sbjct: 353 SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEI 412

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH----YACVVDLLARAGMVEEAEK 321
             + V   C+    +R G  L       + ++  L       + ++D+ A+ G +  +++
Sbjct: 413 AIMCVCGACSQLSALRLGKELH-----CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQR 467

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFS 370
             +     L   D   W  +++   I+G+ +    ++ K+  +G+   DF+
Sbjct: 468 IFDR----LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFT 514



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 6/207 (2%)

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
           +H+M +A   F      D V  T ++  Y   G   ++R +F+K+  +N   W+AI++AY
Sbjct: 127 LHEMVSASTQFCN----DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 182

Query: 139 SRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +R   F++ +S+F ++  V   KP+   L  V+ ACA L  +  G  +H  A +  L  +
Sbjct: 183 TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 242

Query: 198 VILATAVVDMYSKCGHVHSALS-VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           V +  A++ MY KCG V  A+  VF+ +  K   +WNA++ G A N D +K+L+L+ +M 
Sbjct: 243 VFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMT 302

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDG 283
            SG  P   T  ++L  C+  K +  G
Sbjct: 303 DSGLDPDWFTIGSLLLACSRMKSLHYG 329


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 146/432 (33%), Positives = 241/432 (55%), Gaps = 37/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q + P+ ++  YL M D G +P+ +T   L+ AC  +  L ++G  +H   ++ 
Sbjct: 379 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSL-HYGEEIHGFALRN 437

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DPF+  SLL  Y    K   A+ LFD                              
Sbjct: 438 GLAVDPFIGISLLSLYICCGKPFAAQVLFDG----------------------------- 468

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             M  R+ VSW+ ++A YS+     E ++LFRQM   G++P E  ++ V  AC+ L A+ 
Sbjct: 469 --MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALR 526

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H +A + HL +++ ++++++DMY+K G +  +  +F+ +  KD  +WN +I+G  
Sbjct: 527 LGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYG 586

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  K++LELF++M++ G +P + TF  +L  C+HA +V DGL  F  M  ++ +EP+L
Sbjct: 587 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 646

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY CVVD+L RAG +++A + IEE     G  D+ +W +LLS+CRI+G + +G +V  K
Sbjct: 647 EHYTCVVDMLGRAGRIDDALRLIEEMP---GDPDSRIWSSLLSSCRIHGNLGLGEKVANK 703

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+       +VL  N++  +G WD +  +VR  + + G++K  GCS IEV G V  FL
Sbjct: 704 LLELEPEKPENYVLISNLFAGSGKWD-DVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 762

Query: 420 AGDNRHAQAGEI 431
            GD    +  E+
Sbjct: 763 IGDEMLPELEEV 774



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 36/287 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I G+ +  F + S   + +ML  +  F P+  T   ++  C     +E  GM VH   V
Sbjct: 173 IICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEK-GMAVHGLAV 231

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G  E+  V +SL++ YS                               K      A+ 
Sbjct: 232 KLGLNEELMVNNSLIDMYS-------------------------------KCRFLSEAQL 260

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ--EVGMKPNESGLVSVLTACAHL 176
           LF+K  ++N VSW++++  Y+R  D      L ++MQ  +  MK +E  +++VL  C   
Sbjct: 261 LFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLER 320

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +     +H Y+ R+ L+ N ++A A +  Y++CG + S+  VF+ +  K   +WNA++
Sbjct: 321 SELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALL 380

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
            G A N D +K+L+L+ +M  SG  P   T  ++L  C+  K +  G
Sbjct: 381 CGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYG 427



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 121/252 (48%), Gaps = 36/252 (14%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           +P+N+T P +IKAC              A ++  G G+             ++H M T  
Sbjct: 98  KPDNFTLPCVIKAC--------------AGLLDLGLGQ-------------IIHGMATKM 130

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            L       DV     ++  YGK G  E A ++FE MPERN VSW++I+  +S     +E
Sbjct: 131 DLVS-----DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQE 185

Query: 147 VLSLFRQM--QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
             + FR+M   E    P+ + LV+VL  CA    I +G+ VH  A +  L + +++  ++
Sbjct: 186 SFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSL 245

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV--KSGTQP 262
           +DMYSKC  +  A  +F+    K+  +WN+MI G A   D  ++  L  +M    +  + 
Sbjct: 246 IDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKA 305

Query: 263 TETTFVAVLTTC 274
            E T + VL  C
Sbjct: 306 DEFTILNVLPVC 317



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 137/273 (50%), Gaps = 15/273 (5%)

Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
           +  Y + G   ++  +F+ M  +   SW+A++  Y++ SD ++ L L+ QM + G+ P+ 
Sbjct: 349 IAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDW 408

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
             + S+L AC+ + ++  G  +H +A R  L  +  +  +++ +Y  CG   +A  +F+G
Sbjct: 409 FTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDG 468

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           + ++   +WN MI+G + NG   +++ LF +M+  G QP E   + V   C+    +R G
Sbjct: 469 MEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG 528

Query: 284 LNLFENMSAVYGVEPQLEH----YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
             L       + ++  L       + ++D+ A+ G +  +++  +     L   D   W 
Sbjct: 529 KELH-----CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR----LREKDVASWN 579

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGIT--DFS 370
            +++   I+G+ +    ++ K+  +G+   DF+
Sbjct: 580 VIIAGYGIHGRGKEALELFEKMLRLGLKPDDFT 612



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 127/250 (50%), Gaps = 8/250 (3%)

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
           +H+M +A   F      D V  T ++  Y   G   ++R +F+K+  +N   W+AI++AY
Sbjct: 20  LHEMVSASTQFCN----DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAY 75

Query: 139 SRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +R   F++ +S+F ++  V   KP+   L  V+ ACA L  +  G  +H  A +  L  +
Sbjct: 76  TRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSD 135

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV- 256
           V +  A++ MY KCG V  A+ VFE +  ++  +WN++I G + NG  ++S   F  M+ 
Sbjct: 136 VFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLV 195

Query: 257 -KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            +    P   T V VL  C   + +  G+ +   ++   G+  +L     ++D+ ++   
Sbjct: 196 GEESFVPDVATLVTVLPVCAGEEDIEKGMAV-HGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 316 VEEAEKFIEE 325
           + EA+   ++
Sbjct: 255 LSEAQLLFDK 264


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 160/433 (36%), Positives = 246/433 (56%), Gaps = 38/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY      + +V  Y  M D G  P+N+TFP ++KAC  L  +E+ G  +H HVV+ 
Sbjct: 147 LIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEH-GREIHEHVVQT 205

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+ +D FV ++L                               +D Y K G   +ARE+F
Sbjct: 206 GWEKDVFVGAAL-------------------------------IDMYAKCGCVGSAREVF 234

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +K+  R+AV W++++AAYS+       LSL  +M   G++P E+ LV+ ++A A   A+ 
Sbjct: 235 DKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALP 294

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG  +H  + R   E +  + TA+VDMY+KCG V  A ++FE +  K   +WNAMI+G A
Sbjct: 295 QGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYA 354

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A ++L+LF+ M +   +P   TFV VL+ C+H  ++ +G   FE M   Y ++P +
Sbjct: 355 MHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTV 413

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C+VDLL  +G ++EA   I + M  L   D+ VWGALL++C+I+  +E+G     +
Sbjct: 414 QHYTCMVDLLGHSGRLDEAYNLIMQ-MKVL--PDSGVWGALLNSCKIHANVELGEIALER 470

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   D   +V+  NIY +AG W+  A K+RKL+++  +KK   CS IEV   V  FL
Sbjct: 471 LIELEPDDAGNYVILSNIYAQAGKWEGVA-KLRKLMTDRRLKKSIACSWIEVKNKVHAFL 529

Query: 420 AGDNRHAQAGEIY 432
           +GD  H  + EIY
Sbjct: 530 SGDTSHPLSDEIY 542



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 156/362 (43%), Gaps = 42/362 (11%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P    +  L+++C+    ++  G  +HA V   GFG D  + + L+  Y +   + +A  
Sbjct: 73  PTYSNYASLLQSCIARKAIKP-GKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSA-- 129

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
                                        R LF+++P+ N   W+ ++  Y+    ++  
Sbjct: 130 -----------------------------RLLFDRIPKHNIFLWNVLIRGYAWNGPYEAA 160

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           + L+ QM + G+ P+      VL ACA L AI  G  +H +  +   EK+V +  A++DM
Sbjct: 161 VQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDM 220

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG V SA  VF+ I  +DA  WN+M++  + NG     L L   MV +G +PTE T 
Sbjct: 221 YAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATL 280

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V  ++       +  G  L   +S     E   +    +VD+ A+ G V  A    E   
Sbjct: 281 VTAISASADNAALPQGREL-HGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFER-- 337

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV-----LSYNIYKEA 382
             LG      W A+++   ++G       ++ ++  +   D  T V      S+    E 
Sbjct: 338 --LGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEE 395

Query: 383 GW 384
           GW
Sbjct: 396 GW 397



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 5/190 (2%)

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
           +   + P  S   S+L +C    AI  G  +H+         + ++AT +V++Y  C  +
Sbjct: 67  ESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSL 126

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
            SA  +F+ I   +   WN +I G A NG  + +++L+ +M   G  P   TF  VL  C
Sbjct: 127 SSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334
                +  G  + E++    G E  +   A ++D+ A+ G V  A +  ++ +      D
Sbjct: 187 AALSAIEHGREIHEHVVQT-GWEKDVFVGAALIDMYAKCGCVGSAREVFDKIL----VRD 241

Query: 335 ANVWGALLSA 344
           A +W ++L+A
Sbjct: 242 AVLWNSMLAA 251


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  274 bits (700), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 138/360 (38%), Positives = 223/360 (61%), Gaps = 12/360 (3%)

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHK------MGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           V +  F E P +  +++ + S++        +  AR +FD+ P R++V+W TMV GY   
Sbjct: 195 VAREMFDEMPAIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLVSWNTMVRGYAVN 254

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSV 169
           G+  +ARELF++MPE++ VSW+ +++ Y++   + E L LFR MQ E  + PNE  +VSV
Sbjct: 255 GEMNDARELFDRMPEKDVVSWTCMISGYAQARCYTETLELFRAMQSESNVLPNEVTMVSV 314

Query: 170 LTACAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           L+ACAHL A+ +G W H++  ++   L+    L  A++DMYSKCG    A+ +F  +  K
Sbjct: 315 LSACAHLTALEEGRWAHAFIDKHKMVLDSEFNLGAALIDMYSKCGRTDLAVKIFHSLDQK 374

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           +  AWNA+I+G+A+NGD + S+++F++M +SG +P   TFV VLT C H  +V +G   F
Sbjct: 375 NVSAWNALITGLAVNGDVRSSIDVFEQMRRSGEKPNGITFVGVLTACAHGGLVDEGRRCF 434

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
           ++M++  GV+P+ +HY C+VD+L RAG++EEAE+ I   M  +   D  + GALL ACR+
Sbjct: 435 QSMASTCGVQPEAKHYGCMVDMLGRAGLLEEAEELI-RSMPMV--PDVMILGALLGACRM 491

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
           + +++V  RV  ++  +       HVL  +IY  AG   +A   R ++ + G+ K  G S
Sbjct: 492 HKRVDVAARVQNEILGLSTQQSGCHVLISDIYAAAGKWADALYARGVLQKFGISKLRGSS 551



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 179/372 (48%), Gaps = 21/372 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR    +  P+L+   +  +L  G  P+ +TFP L+K+   L      G  VHA  V+ 
Sbjct: 49  LIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHAQAVRR 108

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENAREL 119
           G   D FVV++LL  Y+      + R +FD      D+VTW TM+ GY K G+   AR +
Sbjct: 109 GLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEIGEARRV 168

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+MP+RN VSWSA++ AY+   +      +F +M  +G   N     S++T  A  G +
Sbjct: 169 FEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGR--NVVSWNSMITGFARHGLL 226

Query: 180 TQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
                    A++   E   +N++    +V  Y+  G ++ A  +F+ +  KD  +W  MI
Sbjct: 227 -------PLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMI 279

Query: 237 SGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAV 293
           SG A      ++LELF  M  +S   P E T V+VL+ C H   + +G   + F +   +
Sbjct: 280 SGYAQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKM 339

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
             ++ +    A ++D+ ++ G  + A K        L   + + W AL++   + G +  
Sbjct: 340 V-LDSEFNLGAALIDMYSKCGRTDLAVKIFHS----LDQKNVSAWNALITGLAVNGDVRS 394

Query: 354 GNRVWRKLAEMG 365
              V+ ++   G
Sbjct: 395 SIDVFEQMRRSG 406


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 235/415 (56%), Gaps = 7/415 (1%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           ++ F P  + F  L K+      L          V+  GF    FV +SL+  Y     +
Sbjct: 136 ELPFLP--FAFSTLAKSATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDV 193

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           G AR +FD+  ++DV++WT++V  Y + GD  +A E+F + P ++ V+W+A++  Y++ +
Sbjct: 194 GAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNA 253

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
              + L +F +M E+GM  +E  L   ++ACA LGA+ +  WV   A+R     NV++ +
Sbjct: 254 MPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGS 313

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQ 261
            +VDMY+KCG +  A  VF G+  K+   +++MI+G+A +G A +++ LF  MV ++  +
Sbjct: 314 GLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVE 373

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   TF+ VLT C+HA MV +G   F  M   YG+ P  +HYAC+VDLL RAG+V+EA  
Sbjct: 374 PNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALD 433

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            +        GG   VWGALL ACRI+GK E+   V   L ++       +VL  NI   
Sbjct: 434 LVRSMSVTPHGG---VWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILAS 490

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIE-VNGVVEEFLAGDNRHAQAGEIYRVI 435
           AG   E +KVR L+ +  +KK P  S+ E  +G+V +F AGDN H +  EI + +
Sbjct: 491 AGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKAL 545



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 107/249 (42%), Gaps = 35/249 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q   P  ++  +  M ++G   +  +    I AC  LG L     +V     + 
Sbjct: 245 MVTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRR-AAWVQEIAERT 303

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG                                +VV  + +VD Y K G  + A ++F
Sbjct: 304 GFGN-------------------------------NVVVGSGLVDMYAKCGLIDEASKVF 332

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
             M E+N  ++S+++A  +      E ++LF++M     ++PN    + VLTAC+H G +
Sbjct: 333 YGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFIGVLTACSHAGMV 392

Query: 180 TQGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G +  +  K +Y +  +      +VD+  + G V  AL +   +S     G W A++ 
Sbjct: 393 GEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSVTPHGGVWGALLG 452

Query: 238 GVAMNGDAK 246
              ++G ++
Sbjct: 453 ACRIHGKSE 461


>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
 gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
          Length = 603

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 148/391 (37%), Positives = 234/391 (59%), Gaps = 6/391 (1%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H  VV  G      + ++++  YS   ++  AR LFD+   RD VTWT+M+ GY ++  
Sbjct: 198 MHGAVVVSGMELTVIMANAMVNAYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKK 257

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            + A ++F+ MP+++ V+W+A+++ + +  +    L LF +M   G+ P    LVSVL A
Sbjct: 258 LDEALQVFDMMPDKDRVAWTALISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGA 317

Query: 173 CAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           CA LG +T+G  +H    R  +     N+ +  A+VDMYSKCG + +A++VF  +  +D 
Sbjct: 318 CAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMTAAMAVFHRMPERDF 377

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +WN+M++G + NG  K+SL +F+ M+ +G +PT  TF+AVLT C+H+ +V +G  + E+
Sbjct: 378 ISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACSHSGLVSNGRLILES 437

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   +GVEP+ EHYA  +D L R   +EEA +FI++    +G G A  WGALL ACR++G
Sbjct: 438 MED-HGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTAGSWGALLGACRLHG 496

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSV 408
            IE+   V   L ++   +   +V+  NIY  AG WD +A +VR L+ E G+KK    S 
Sbjct: 497 NIELAEEVAEFLFKLEPGNSGRYVMLSNIYAAAGQWD-DARRVRGLMKEKGLKKDQAYSW 555

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           IEV  +   F+A D  H +A EIY ++   L
Sbjct: 556 IEVRSLKHVFVADDMSHCEADEIYEMLGKLL 586



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 127/291 (43%), Gaps = 39/291 (13%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           PL++  +  G +   G  VHA +VK        + + L+  YS +     A A FD  P 
Sbjct: 40  PLLERAISTGDVLRLGRAVHARLVKTALTSHTLLSNRLVALYSRLPSSAAAVAAFDDLPH 99

Query: 95  RDVVTWTTMVDGYGKMGD-FENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLF 151
           ++  ++ T++    +  D F +A  LF+ MP   RN VS++ +M++        E L + 
Sbjct: 100 KNAHSYNTLLAALLRRPDTFPDALHLFDTMPADARNLVSYNTLMSSLVHHGRQAEALRVV 159

Query: 152 RQMQE-----VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            ++        G+  +   +VSV TACA + A      +H       +E  VI+A A+V+
Sbjct: 160 ARLARDRFLGPGLAMDRFTVVSVATACAGIRAARPLREMHGAVVVSGMELTVIMANAMVN 219

Query: 207 MYSKCGHVH-------------------------------SALSVFEGISNKDAGAWNAM 235
            YSK   V                                 AL VF+ + +KD  AW A+
Sbjct: 220 AYSKAWRVEEARHLFDQISIRDNVTWTSMISGYCQVKKLDEALQVFDMMPDKDRVAWTAL 279

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           ISG   NG+   +LELF+RM+  G  PT    V+VL  C    +V  G  L
Sbjct: 280 ISGHEQNGEEDTALELFERMLAEGVSPTTFALVSVLGACAKLGLVTRGKEL 330


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 154/432 (35%), Positives = 245/432 (56%), Gaps = 37/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G  Q   P+ ++  Y+ M   G  P+ +T   L+ A   L  L  +G  VH  V++ 
Sbjct: 308 LIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLR-YGKEVHGFVLRH 366

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+  SLL  Y  +H                              G+  +AR LF
Sbjct: 367 GLEIDSFIGISLLSLY--IH-----------------------------CGESSSARLLF 395

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E+++VSW+A+++ YS+    ++ L LFR++   G +P++  +VSVL AC+   A+ 
Sbjct: 396 DGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALR 455

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H YA +  L ++V +A + +DMY+K G +  + SVF+G+ NKD  +WNA+I+   
Sbjct: 456 LGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYG 515

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++GD ++S+ELF+RM K G  P   TF+ +LT C+HA +V +GL  F  M   +G+EP+L
Sbjct: 516 VHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKL 575

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYACV+D+L RAG +++A + + E        D+ VW +LLS CR +G++E+G  V  K
Sbjct: 576 EHYACVMDMLGRAGRLDDALRLVHEMP---EQPDSRVWSSLLSFCRNFGELEIGQIVAEK 632

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +V   N+Y  +G WD +  +VR++I + G++K  GCS IE+ G V  F+
Sbjct: 633 LLELEPKNVENYVSLSNLYAGSGRWD-DVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFV 691

Query: 420 AGDNRHAQAGEI 431
           AGDN   Q+ E+
Sbjct: 692 AGDNLLPQSKEM 703



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 170/367 (46%), Gaps = 49/367 (13%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           +GY+   F   ++F  + M +   E N  T   ++ AC+ +  L +    +H + ++ GF
Sbjct: 213 KGYI---FEAFNLFREMQMQE-DIEVNEVTVLNILPACLEISQLRSLKE-LHGYSIRHGF 267

Query: 63  GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
             D  V +                                 V  Y K G    A  +F  
Sbjct: 268 QYDELVANGF-------------------------------VAAYAKCGMLICAERVFYS 296

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           M  +   SW+A++   ++  D ++ L+L+ QM   G+ P+   + S+L A AHL ++  G
Sbjct: 297 METKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYG 356

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             VH +  R+ LE +  +  +++ +Y  CG   SA  +F+G+  K + +WNAMISG + N
Sbjct: 357 KEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQN 416

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G  + +L LF ++V  G QP++   V+VL  C+    +R G       +  Y ++  L  
Sbjct: 417 GLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG-----KETHCYALKALLME 471

Query: 303 ---YAC-VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
               AC  +D+ A++G ++E+    +    GL   D   W A+++A  ++G  E    ++
Sbjct: 472 DVFVACSTIDMYAKSGCIKESRSVFD----GLKNKDLASWNAIIAAYGVHGDGEESIELF 527

Query: 359 RKLAEMG 365
            ++ ++G
Sbjct: 528 ERMRKVG 534



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 148/327 (45%), Gaps = 42/327 (12%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLEN-FGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81
           D  F  +N+TFP +IKAC   G L+   G  +H  V+K G   D FV ++L+  Y     
Sbjct: 24  DTEFNADNFTFPCVIKACT--GSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMY----- 76

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
                                     GK G  + A ++F  MP RN VSW++I++ +S  
Sbjct: 77  --------------------------GKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSEN 110

Query: 142 SDFKEVLSLFRQMQ--EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
              K+   +  +M   E G+ P+ + LV+VL  CA    +  G+ +H  A +  L ++V 
Sbjct: 111 GFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVR 170

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VKS 258
           +  ++VDMYSKCG++  A  +F+  + K+A +WN MI G+   G   ++  LF  M ++ 
Sbjct: 171 VNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE 230

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
             +  E T + +L  C     +R  L      S  +G +         V   A+ GM+  
Sbjct: 231 DIEVNEVTVLNILPACLEISQLR-SLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLIC 289

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSAC 345
           AE+        +     N W AL+  C
Sbjct: 290 AERVFYS----METKTVNSWNALIGGC 312



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 35/286 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I G+ +  F K      ++M+  + G  P+  T   ++  C     ++  G+ +H   V
Sbjct: 103 IISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQ-MGIRIHGLAV 161

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G  ED  V +SL                               VD Y K G    A+ 
Sbjct: 162 KLGLSEDVRVNNSL-------------------------------VDMYSKCGYLTEAQM 190

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLG 177
           LF+K   +NAVSW+ ++          E  +LFR+MQ +  ++ NE  ++++L AC  + 
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEIS 250

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +     +H Y+ R+  + + ++A   V  Y+KCG +  A  VF  +  K   +WNA+I 
Sbjct: 251 QLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIG 310

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           G A NGD +K+L L+ +M  SG  P   T  ++L    H K +R G
Sbjct: 311 GCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYG 356


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 241/434 (55%), Gaps = 37/434 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + +M+ M   P+  T+  ++ AC   G +E  G  VH+ V   
Sbjct: 167 MISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIE-LGRQVHSWVDDH 225

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  +V++L++ YS                               K G+ E A  LF
Sbjct: 226 GFDSNLKIVNALIDLYS-------------------------------KCGEVETACGLF 254

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++SVL ACAHLGAI 
Sbjct: 255 QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAID 314

Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMY+KCG + +A  VF  + +K   +WNAMI G
Sbjct: 315 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 374

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  S +LF RM K G +P + TFV +L+ C+H+ M+  G ++F +M+  Y + P
Sbjct: 375 FAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTP 434

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC+++G +E+     
Sbjct: 435 KLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKMHGNVELAESFA 491

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           + L ++   + S+++L  NIY  AG   +  ++R L++   MKK PGCS IEV+ VV EF
Sbjct: 492 QNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEF 551

Query: 419 LAGDNRHAQAGEIY 432
           + GD  H Q  EIY
Sbjct: 552 VVGDKFHPQNREIY 565



 Score =  228 bits (582), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 118/368 (32%), Positives = 212/368 (57%), Gaps = 8/368 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+  ++ P  S+  Y+ M+ +G  PN+YTFP L+K+C         G  +H  V+K 
Sbjct: 35  MIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKTFTE-GQQIHGQVLKL 93

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D +V +SL+  Y    ++  A  +FD+S  RDVV++T ++ GY   GD  +A++LF
Sbjct: 94  GFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLF 153

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+    +KE L LF +M ++ ++P+ES  V+VL+ACAH G+I 
Sbjct: 154 DEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIE 213

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +  + N+ +  A++D+YSKCG V +A  +F+G+S KD  +WN +I G  
Sbjct: 214 LGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYT 273

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T ++VL  C H   +  G  ++++ +   + GV  
Sbjct: 274 HMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYID-KRLKGVTN 332

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
                  ++D+ A+ G +E A +     +        + W A++    ++G+ +    ++
Sbjct: 333 ASSLRTSLIDMYAKCGDIEAAHQVFNSML----HKSLSSWNAMIFGFAMHGRADASFDLF 388

Query: 359 RKLAEMGI 366
            ++ ++GI
Sbjct: 389 SRMRKIGI 396



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 36/258 (13%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +FE + E N + W+ ++  ++  SD    L+L+  M  +G+ PN      +L +CA 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
               T+G  +H    +   + ++ + T+++ MY +   +  A  VF+  S++D  ++ A+
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 236 ISGVAMNGDA-------------------------------KKSLELFDRMVKSGTQPTE 264
           I+G A  GD                                K++LELF+ M+K   +P E
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           +T+V VL+ C H+  +  G  +   +   +G +  L+    ++DL ++ G VE A    +
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDD-HGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 325 EKMGGLGGGDANVWGALL 342
               GL   D   W  L+
Sbjct: 256 ----GLSYKDVISWNTLI 269


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 152/424 (35%), Positives = 230/424 (54%), Gaps = 34/424 (8%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           +FP+ S+ CY  ML      +NYTF  +IK+   L    + G  +H HV   G+G D +V
Sbjct: 97  SFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAF-SIGETIHCHVYICGYGLDAYV 155

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            ++L+ FY+                               K G    AR++F+KMPE+  
Sbjct: 156 QAALVSFYA-------------------------------KSGHVMIARKVFDKMPEKTV 184

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           V+W+++++ Y +    KE + LF  MQ++G+KP+ S  VS+L+ACA +GAI  G WVH Y
Sbjct: 185 VAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEY 244

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             R   + NV+L TA+++MYS+CG+V  A  VF+ +  K+  AW AMISG  M+G   ++
Sbjct: 245 IARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQA 304

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           +ELF+ M   G +P   TFVAVL+ C HA +V +G  +F  M   YG+ P +EH  C+VD
Sbjct: 305 IELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVD 364

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +L RAG + EA +FI  K          VW A+L AC+++   ++G  V   L  +   +
Sbjct: 365 MLGRAGHLNEAYQFI--KNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPEN 422

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
              +V+  NIY  AG      K+R ++    +KK+ G S I+V+  V  F  GD  H + 
Sbjct: 423 PGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKT 482

Query: 429 GEIY 432
            +IY
Sbjct: 483 NQIY 486



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 120/263 (45%), Gaps = 43/263 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q  F K +V  +  M D+G +P++ TF  L+ AC  +G +   G +VH ++ + 
Sbjct: 190 MISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAI-GLGFWVHEYIARN 248

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  +  + ++L+  YS    +  AR +FD   ++++V WT M+ GYG  G    A ELF
Sbjct: 249 CFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELF 308

Query: 121 EKM----PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            +M    P  N V++ A+++                                   ACAH 
Sbjct: 309 NEMSFDGPRPNNVTFVAVLS-----------------------------------ACAHA 333

Query: 177 GAITQGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD--AGAWN 233
           G + +G  + +  K+ Y L  +V     +VDM  + GH++ A    +  S K+     W 
Sbjct: 334 GLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWT 393

Query: 234 AMISGVAMNGDAKKSLELFDRMV 256
           AM+    M+ +    +E+ + ++
Sbjct: 394 AMLGACKMHKNFDLGVEVAEHLL 416



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 136/325 (41%), Gaps = 55/325 (16%)

Query: 35  PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           P+  + ++ GP       +HA ++  G G    +++ LL F                   
Sbjct: 20  PIYHSIILAGPRLKPLQQIHARIIITGLGRTRSLITKLLSF------------------- 60

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
                       Y         R LF  +P+ +   + +++   S+ S  +E L  +R+M
Sbjct: 61  -----------AYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRM 109

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
               +  +     +V+ + A L A + G  +H +        +  +  A+V  Y+K GHV
Sbjct: 110 LLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHV 169

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             A  VF+ +  K   AWN+MISG   NG  K+++ELF  M   G +P  +TFV++L+ C
Sbjct: 170 MIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSAC 229

Query: 275 THAKMVRDGLNLFE-------NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF---IE 324
                +  G  + E       +++ V G          ++++ +R G V +A +    +E
Sbjct: 230 AQVGAIGLGFWVHEYIARNCFDLNVVLGT--------ALMNMYSRCGNVSKAREVFDSME 281

Query: 325 EKMGGLGGGDANVWGALLSACRIYG 349
           EK       +   W A++S   ++G
Sbjct: 282 EK-------NIVAWTAMISGYGMHG 299


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 246/469 (52%), Gaps = 42/469 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+  +  K ++  Y  M   GF P+ YT+P ++KA      L   G+ +H  V+K 
Sbjct: 91  MIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLW-VGLQIHGAVLKI 149

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
           G   + +V + L+  Y     +  A+ + D+ P RDVV+W +MV  Y + G F +A    
Sbjct: 150 GLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELC 209

Query: 117 ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
                                            +E+F K+ +++ +SW+ ++A Y   S 
Sbjct: 210 REMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSM 269

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            KE + L+ QM+  G++P+   +VSVL A   L A++ G  VH +A+R  L  N++L  A
Sbjct: 270 PKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENA 329

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A +VF  +  +D  +W ++IS     G  + ++ +F  M  SG  P 
Sbjct: 330 LIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPD 389

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV+VL  C+HA ++ DG   F N+ A  G+ P+LEH+ACVVDLL RAG ++EA  FI
Sbjct: 390 SIAFVSVLAACSHAGLLDDGRYYF-NLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFI 448

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
            +        D  VWG LLSACR+Y  + +G     KL  +       +VL  NIY +AG
Sbjct: 449 RQMP---LEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAG 505

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              +   +R ++   G+KK PG S +E+N  V  FLAGD+ H Q+ +IY
Sbjct: 506 RWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIY 554



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 10/223 (4%)

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTT-----MVDGYGKMGDF 113
           +  F ED  + + +L+ Y     + T + L  K  +   + W       ++  Y   G+ 
Sbjct: 16  QLSFTED--LCNRILDQYP---DINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEP 70

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             AR +F+++ ++N V ++ ++ +Y     +K+ L +++ M   G  P+      VL A 
Sbjct: 71  GLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKAS 130

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           +   ++  GL +H    +  L+ N+ +   ++ MY KC  +  A  V + I  +D  +WN
Sbjct: 131 SRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWN 190

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           +M+S  A NG    +LEL   M     +P + T  ++L   T+
Sbjct: 191 SMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTN 233



 Score = 38.1 bits (87), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 35/176 (19%), Positives = 76/176 (43%), Gaps = 9/176 (5%)

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           +L  N  +   ++ +Y+ CG    A  +F+ I++K+   +N MI     N   K +L ++
Sbjct: 49  YLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVY 108

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA--CVVDLL 310
             M   G  P   T+  VL   + +  +  GL +     AV  +   L  Y    ++ + 
Sbjct: 109 KTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIH---GAVLKIGLDLNLYVGNGLIAMY 165

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +   ++EA++ ++E    +   D   W +++S     G+      + R++  + +
Sbjct: 166 GKCKSLKEAQQVLDE----IPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNL 217


>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
          Length = 545

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 152/427 (35%), Positives = 238/427 (55%), Gaps = 6/427 (1%)

Query: 6   MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           +  ++  +SVF +   +  G  P+ +     + A   LG  +  G  VH  + + G   +
Sbjct: 97  LDHHWKAISVFSH--AIASGHRPDGFAAVGALSASGGLGD-QRIGSVVHGLIFRCGLDSE 153

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
             V ++L++ Y    K   AR +FD+   +D VTW +M+ GY K    ++A   F +MP 
Sbjct: 154 LVVCNALVDMYCRCGKFEPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPM 213

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           ++ VSW+A++  + +     + L LF +M   G +PN   +V VL+ACA +GA+  G  +
Sbjct: 214 KSTVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGALDLGRAI 273

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
           H Y  + +   N+I+  A++DMY+K G + SA SVFE +  KDA  W  MIS   + G+ 
Sbjct: 274 HGYGSKSNATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNG 333

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
           +K++ELF  M++SG  P   TFV+VL+ C+HA ++++G  LF+ M  VY ++P+LEHY C
Sbjct: 334 RKAVELFWDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGC 393

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           +VDLL R G++EEAE  I+         D  +W +LLSAC  +G   +      ++ +  
Sbjct: 394 MVDLLGRGGLLEEAEALIDHMD---VEPDIVIWRSLLSACLAHGNDRLAEIAGMEIIKRE 450

Query: 366 ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
             D   +VL +N+Y  +    EA  +RK +    + KKPGCS IEV+GVV EFL  D  H
Sbjct: 451 PGDDGVYVLLWNMYALSNRWKEALDMRKQMLSRKIYKKPGCSWIEVDGVVHEFLVEDKTH 510

Query: 426 AQAGEIY 432
               EIY
Sbjct: 511 DARREIY 517



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 118/274 (43%), Gaps = 36/274 (13%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y + G   +A  LF+++P  + +S++++M+ + ++    + +S+F      G +P+    
Sbjct: 63  YAEFGRPADAGRLFDEIPHPDIISFTSLMSLHLKLDHHWKAISVFSHAIASGHRPDGFAA 122

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH------------- 213
           V  L+A   LG    G  VH    R  L+  +++  A+VDMY +CG              
Sbjct: 123 VGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVFDRMLV 182

Query: 214 ------------------VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
                             V SALS F  +  K   +W A+I+G   +    ++LELF +M
Sbjct: 183 KDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALELFGKM 242

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           +  G +P   T V VL+ C     +  G  +    S        +   A ++D+ A++G 
Sbjct: 243 LLEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNA-LMDMYAKSGS 301

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +  A    EE    +   DA  W  ++S+  + G
Sbjct: 302 IASAFSVFEE----VQMKDAFTWTTMISSFTVQG 331



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++Q   P  ++  +  ML  G  PN+ T   ++ AC  +G L + G  +H +  K 
Sbjct: 222 LITGHVQDKQPIQALELFGKMLLEGHRPNHITIVGVLSACADIGAL-DLGRAIHGYGSKS 280

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  V ++L++ Y+    + +A ++F++   +D  TWTTM+  +   G+   A ELF
Sbjct: 281 NATTNIIVTNALMDMYAKSGSIASAFSVFEEVQMKDAFTWTTMISSFTVQGNGRKAVELF 340

Query: 121 EKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157
             M       N+V++ ++++A S     +E   LF +M+EV
Sbjct: 341 WDMLRSGILPNSVTFVSVLSACSHAGLIQEGRELFDKMREV 381


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  273 bits (699), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 244/439 (55%), Gaps = 8/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M   Y+    P+L +  + +M   G +PN+ T   ++ AC  L  L++ G  +H   V+ 
Sbjct: 204 MSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS-GRAIHGFAVRH 262

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  E+ FV S+L+  Y+    +  AR +FD  P RDVV+W  ++  Y    +++    LF
Sbjct: 263 GMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALF 322

Query: 121 EKMP----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            +M     E +  +W+A++         ++ + + R+MQ +G KPN+  + S L AC+ L
Sbjct: 323 SQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSIL 382

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            ++  G  VH Y  R+ L  ++   TA+V MY+KCG ++ + +VF+ I  KD  AWN MI
Sbjct: 383 ESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMI 442

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
              AM+G+ ++ L LF+ M++SG +P   TF  VL+ C+H+++V +GL +F +M   + V
Sbjct: 443 IANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLV 502

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           EP   HYAC+VD+ +RAG + EA +FI+          A+ WGALL ACR+Y  +E+   
Sbjct: 503 EPDANHYACMVDVFSRAGRLHEAYEFIQRMP---MEPTASAWGALLGACRVYKNVELAKI 559

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              KL E+   +   +V  +NI   A    EA++ R L+ E G+ K PGCS ++V   V 
Sbjct: 560 SANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVH 619

Query: 417 EFLAGDNRHAQAGEIYRVI 435
            F+ GD  + ++ +IY  +
Sbjct: 620 TFVVGDKNNMESDKIYNFL 638



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 132/299 (44%), Gaps = 33/299 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  +     P  ++  Y  +   G +P+N  F  + KAC   G        VH   ++ 
Sbjct: 103 LISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKACGASGDASRVKE-VHDDAIRC 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F              +G A                 ++  YGK    E AR +F
Sbjct: 162 GMMSDAF--------------LGNA-----------------LIHAYGKCKCVEGARRVF 190

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +  ++ VSW+++ + Y      +  L++F +M   G+KPN   L S+L AC+ L  + 
Sbjct: 191 DDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLK 250

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H +A R+ + +NV + +A+V +Y++C  V  A  VF+ + ++D  +WN +++   
Sbjct: 251 SGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYF 310

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            N +  K L LF +M   G +  E T+ AV+  C         + +   M  + G +P 
Sbjct: 311 TNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNL-GFKPN 368



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 140/310 (45%), Gaps = 14/310 (4%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +GDF  A++LF+ +P+ +  + S +++A++      E + L+  ++  G+KP+ S  ++V
Sbjct: 79  VGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTV 138

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
             AC   G  ++   VH  A R  +  +  L  A++  Y KC  V  A  VF+ +  KD 
Sbjct: 139 AKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDV 198

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +W +M S     G  +  L +F  M  +G +P   T  ++L  C+  K ++ G      
Sbjct: 199 VSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSG-RAIHG 257

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            +  +G+   +   + +V L AR   V++A    +     +   D   W  +L+A     
Sbjct: 258 FAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDL----MPHRDVVSWNGVLTAYFTNR 313

Query: 350 KIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK----- 403
           + + G  ++ +++  G+  D +T         E G   +A ++ + +   G K       
Sbjct: 314 EYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITIS 373

Query: 404 ---PGCSVIE 410
              P CS++E
Sbjct: 374 SFLPACSILE 383


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/433 (33%), Positives = 251/433 (57%), Gaps = 4/433 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q    K ++  +  M + G   +      ++ AC  +  L   G  +H++++  
Sbjct: 142 MLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRT-GKSIHSYMLVS 200

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  + S+L+  Y+    M  A  L++  P +D+V+ T MV GY +   FE AR +F
Sbjct: 201 DILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIF 260

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE++ VSWSA+++ Y+  +   E LSLF  MQE G++P+E  ++SV++ACA+LG++ 
Sbjct: 261 DGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLD 320

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +  W+H++ K   L K + +  A++DM++KCG ++ AL++F  +  K+   W +MI+  A
Sbjct: 321 KAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFA 380

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+GD K +L LF++M   G +P E TF+ +L  C HA +V +G +LF +M   YG+EP+ 
Sbjct: 381 MHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKH 440

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RA +++EA   IE         +  VWG+LL+AC ++G +++G    +K
Sbjct: 441 EHYGCMVDLLGRAKLMQEAVNLIESMH---LRPNVPVWGSLLAACWMHGDLKLGAFAAKK 497

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + ++        VL   IY ++    +A +VR ++   G+ K+ G S +++N    EF A
Sbjct: 498 ILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDLNEPFHEFTA 557

Query: 421 GDNRHAQAGEIYR 433
           G  ++ +  +I++
Sbjct: 558 GGEKYPENDKIFQ 570



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 129/280 (46%), Gaps = 36/280 (12%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  Y   G   +AR++F+ M  R+ VSW  ++ +Y +  ++KE L  F +M+  G+ 
Sbjct: 109 TALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVL 168

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS- 219
            ++  L +VL+AC H+  +  G  +HSY     +  N  L++A++++Y+ C  +  A   
Sbjct: 169 SDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKL 228

Query: 220 ------------------------------VFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
                                         +F+G+  KD  +W+AMISG A +    ++L
Sbjct: 229 YNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEAL 288

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
            LF+ M + G +P E T ++V++ C +   + D            G+   L     ++D+
Sbjct: 289 SLFNDMQECGIRPDEVTMLSVISACANLGSL-DKAKWIHAFIKNNGLNKILHICNALIDM 347

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            A+ G +  A     E    +   +   W ++++A  ++G
Sbjct: 348 FAKCGGINLALNIFNE----MPQKNVITWTSMITAFAMHG 383



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 7/180 (3%)

Query: 147 VLSLFRQMQEVGMKP-NESGLVSVLTA---CAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           VL+    ++  G+ P     L ++L +   C   GA  +G   H+ A R     +  + T
Sbjct: 52  VLAACACLRRTGLPPPGPRALPALLRSAARCVGAGAYVRG--AHALAFRVGSLDDGFVRT 109

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A+V  Y+ CG V  A  VF+G++ +D  +W  M+       + K++L  F +M  SG   
Sbjct: 110 ALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLS 169

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            +     VL+ C H + +R G ++   M  V  +       + +++L A    +E AEK 
Sbjct: 170 DQLILATVLSACGHIRHLRTGKSIHSYM-LVSDILINAHLSSALINLYASCASMEMAEKL 228


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 142/403 (35%), Positives = 241/403 (59%), Gaps = 12/403 (2%)

Query: 13   LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGP---LENFGMFVHAHVVKFGFGEDPFVV 69
            L VF  + M D+  + +  T   ++ AC +LG    ++    ++  + V+     D ++ 
Sbjct: 881  LVVFEEMRMADV--KGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEV----DVYLG 934

Query: 70   SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
            ++L++ Y     +  AR +FD+  DR++V+W  M+ GYGK G+   AR+LF+ MP R+ +
Sbjct: 935  NTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVI 994

Query: 130  SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
            SW++++++YS+   F + + LF++M    +KP+E  + SVL+ACAH+GA+  G  VH Y 
Sbjct: 995  SWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYI 1054

Query: 190  KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            ++Y +  ++ +  A++DMY KCG V   LSVFE +  +D+ +W ++I+G+A+NG A  +L
Sbjct: 1055 RKYDVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSAL 1114

Query: 250  ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
             LF  M++ G +PT  TFV VL  C HA +V  GL  FE+M  VYG+ P+++HY CVVDL
Sbjct: 1115 NLFSLMLREGVRPTHGTFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDL 1174

Query: 310  LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
            L+R+G +  A +FI+         D  VW  LLSA +++G + +     +KL E   ++ 
Sbjct: 1175 LSRSGNLGRAYEFIKRMP---MDPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNS 1231

Query: 370  STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
              ++LS N Y  +    +  K+R+L+ E+ + K    S +E+N
Sbjct: 1232 GNYILSSNTYAGSNRWEDVIKMRRLMEESNVHKPSASSSVEIN 1274



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 168/380 (44%), Gaps = 69/380 (18%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MIRG+ Q N P  ++  Y  M       NN T+P L+KAC  +  +      VHA V+K 
Sbjct: 767  MIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNVS--CTTVHARVLKL 824

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            GF  D FV ++L+  Y+                            G+ ++G    AR++F
Sbjct: 825  GFDSDLFVSNALIHGYA----------------------------GFCELG---FARKVF 853

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++M ER+ VSW++++  Y R   + EVL +F +M+   +K +   +V V+ AC  LG   
Sbjct: 854  DEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWG 913

Query: 181  QGLWVHSYAKRYHLEKNVILATAVVDM-------------------------------YS 209
                +  Y +   +E +V L   ++DM                               Y 
Sbjct: 914  VVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYG 973

Query: 210  KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            K G++ +A  +F+ + ++D  +W +MIS  +  G   K++ LF  M+ +  +P E T  +
Sbjct: 974  KAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVAS 1033

Query: 270  VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
            VL+ C H   +  G  + E +   Y V   +     ++D+  + G VE+     EE    
Sbjct: 1034 VLSACAHIGALDVGEAVHEYIRK-YDVNADIYVGNALIDMYCKCGAVEKGLSVFEE---- 1088

Query: 330  LGGGDANVWGALLSACRIYG 349
            +G  D+  W ++++   + G
Sbjct: 1089 MGKRDSVSWTSVIAGLAVNG 1108



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MI  Y QA     +V  + +M+    +P+  T   ++ AC  +G L+  G  VH ++ K+
Sbjct: 999  MISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALD-VGEAVHEYIRKY 1057

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                D +V ++L++ Y     +    ++F++   RD V+WT+++ G    G  ++A    
Sbjct: 1058 DVNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSA---- 1113

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                       L+LF  M   G++P     V VL ACAH G + 
Sbjct: 1114 ---------------------------LNLFSLMLREGVRPTHGTFVGVLLACAHAGVVD 1146

Query: 181  QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            +GL +  S  + Y L   +     VVD+ S+ G++  A    + +  + D   W  ++S 
Sbjct: 1147 KGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRILLSA 1206

Query: 239  VAMNGD 244
              ++G+
Sbjct: 1207 SQVHGN 1212



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 1/160 (0%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ELF ++P      W+ ++  +S+ +   E +  +  M    +  N      +L ACA 
Sbjct: 749 ANELFRQIPRPTLSHWNIMIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACAR 808

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           +  ++    VH+   +   + ++ ++ A++  Y+    +  A  VF+ +S +D  +WN++
Sbjct: 809 ISNVSCTT-VHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSL 867

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           I G        + L +F+ M  +  +    T V V+  CT
Sbjct: 868 ICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACT 907


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 242/437 (55%), Gaps = 43/437 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + +M+     P+  T   ++ AC     +E  G  VH+ +   
Sbjct: 191 MISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE-LGRQVHSWIDDH 249

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L                               +D Y K G+ E A  LF
Sbjct: 250 GFGSNLKIVNAL-------------------------------IDLYIKCGEVETACGLF 278

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACAHLGAI 
Sbjct: 279 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIE 338

Query: 181 QGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            G W+H Y  +    K V  A    T+++DMY+KCG + +A  VF+ I N+   +WNAMI
Sbjct: 339 IGRWIHVYINKR--LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 396

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G AM+G A  + ++F RM K+  +P + TFV +L+ C+H+ M+  G ++F +M   Y +
Sbjct: 397 FGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKI 456

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            P+LEHY C++DLL  +G+ +EAE+ I   +M      D  +W +LL AC+++G +E+G 
Sbjct: 457 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEM----EPDGVIWCSLLKACKMHGNVELGE 512

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
              + L ++   +  ++VL  NIY  AG   E  K+R L+++ GMKK PGCS IE++ VV
Sbjct: 513 SYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 572

Query: 416 EEFLAGDNRHAQAGEIY 432
            EF+ GD  H +  EIY
Sbjct: 573 HEFIIGDKFHPRNREIY 589



 Score =  226 bits (575), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 215/396 (54%), Gaps = 35/396 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  +++ Y+ M+ +G  PN YTFP L+K+C         G  +H HV+K 
Sbjct: 59  MFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFRE-GQQIHGHVLKL 117

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D +V +SL+  Y    ++  AR +FD+S  RDVV++T ++ GY   G   +A+++F
Sbjct: 118 GYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMF 177

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+   + KE L LF++M +  ++P+ES +VSV++ACA   +I 
Sbjct: 178 DEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE 237

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D+Y KCG V +A  +FEG+S KD  +WN +I G  
Sbjct: 238 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T +++L  C H   +  G  ++++ N   + GV  
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYIN-KRLKGVAN 356

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMG-GLGGGDANVWG------------------ 339
              H   ++D+ A+ G +E A++  +  +   L   +A ++G                  
Sbjct: 357 ASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 416

Query: 340 ------------ALLSACRIYGKIEVGNRVWRKLAE 363
                        LLSAC   G +++G  ++R + E
Sbjct: 417 KNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 452



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 64/321 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K G     + +S L+EF  L             SP  D + +   V        
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVL-------------SPHFDGLPYAISV-------- 44

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                  FE + E N + W+ +   ++  SD    L L+  M  +G+ PN      +L +
Sbjct: 45  -------FETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA   A  +G  +H +  +   + ++ + T+++ MY + G +  A  VF+  S++D  ++
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 157

Query: 233 NAMISGVAM-------------------------------NGDAKKSLELFDRMVKSGTQ 261
            A+I+G A                                 G+ K++LELF  M+K+  +
Sbjct: 158 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 217

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E+T V+V++ C  +  +  G  +   +   +G    L+    ++DL  + G VE A  
Sbjct: 218 PDESTMVSVVSACAQSASIELGRQVHSWIDD-HGFGSNLKIVNALIDLYIKCGEVETACG 276

Query: 322 FIEEKMGGLGGGDANVWGALL 342
             E    GL   D   W  L+
Sbjct: 277 LFE----GLSYKDVISWNTLI 293


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 263/473 (55%), Gaps = 37/473 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG  +++ P+ S+  +++M    F P ++++F  ++KA   L  +   G+ +H   + 
Sbjct: 76  LIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSV-RVGIQLHCQALV 134

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD------------------------- 94
            G     FV ++L+  Y     +G AR +FD+ P+                         
Sbjct: 135 HGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGREL 194

Query: 95  ------RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
                 R++++W  M+ GY K G+ E ARE+F +MP ++ VSWS ++  ++    F+E  
Sbjct: 195 FDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAF 254

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           S FR++Q  GM+PNE+ L  VL+ACA  GA+  G  +H + ++  L   V +  A++D Y
Sbjct: 255 SFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTY 314

Query: 209 SKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           SKCG+V  A  VFE I N ++  +W +M++ +AM+G  ++++ +F +M +SG +P E  F
Sbjct: 315 SKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAF 374

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           +++L  C+HA +V  G   F+ M  +Y +EP +EHY C+VDL  RAG +++A +F+ +  
Sbjct: 375 ISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMP 434

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
                  A +W  LL AC ++G +++  +V  +L+E+   + S HVL  N Y  AG   +
Sbjct: 435 IPC---TAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKD 491

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           A  VR+ ++E  + K PG S+IEV+ ++  FLAG  ++    E Y+ +   ++
Sbjct: 492 AASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIR 544



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 132/309 (42%), Gaps = 49/309 (15%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEF--YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HA+V+K G   DPF+   LL     SL   +  A  LF  +P+ DV    T++ G    
Sbjct: 24  IHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGL--- 80

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES-GLVSV 169
             +E+ R                           ++ L  F +M+     P +S     +
Sbjct: 81  --YESDRP--------------------------QDSLLKFIEMRRNSFSPPDSFSFAFI 112

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           + A A+L ++  G+ +H  A  + L+ ++ + T ++ MY +CG V  A  VF+ +   +A
Sbjct: 113 VKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNA 172

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET--TFVAVLTTCTHAKMVRDGLNLF 287
            AWNAM++     GD K   ELFD M      P     ++  +L   T A  +     +F
Sbjct: 173 IAWNAMVTACCRGGDMKGGRELFDLM------PVRNLMSWNVMLAGYTKAGELELAREMF 226

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACR 346
             M     V      ++ ++   A  G  EEA  F  E +  G+   + ++ G +LSAC 
Sbjct: 227 LEMPMKDDVS-----WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTG-VLSACA 280

Query: 347 IYGKIEVGN 355
             G +E G 
Sbjct: 281 QAGALEFGK 289


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/450 (34%), Positives = 243/450 (54%), Gaps = 22/450 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV-- 58
           MI GY+Q+     +   +  M+     P+ +TF  L+ AC       N G F+H   V  
Sbjct: 267 MISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACA------NAGFFLHGKSVHG 320

Query: 59  KFGFGEDPFVV-------SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           +F   +  FV        ++L+  YS   K+  A  +FD    +DVV+W T++ GY + G
Sbjct: 321 QFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESG 380

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
             +NA  +F++MP ++ +SW  +++ Y      ++ L LF QM+   +KP +      + 
Sbjct: 381 CLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVA 440

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           AC  LGA+  G  +H++  +   E +     A++ MY++CG V  A  VF  + N D+ +
Sbjct: 441 ACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVS 500

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WNAMIS +  +G  +++LELFD+MV  G  P   +F+ +LT C HA +V DG   FE+M 
Sbjct: 501 WNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESME 560

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
             +G+ P  +HYA ++DLL RAG + EA   I+            +W A+LS CRI G +
Sbjct: 561 RDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMP---FEPTPAIWEAILSGCRINGDM 617

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
           E+G     +L +M      T++L  N Y  AG  ++A +VRKL+ + G+KK+PGCS IEV
Sbjct: 618 ELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 677

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441
              V  FL GD +H  A E+YR    FL+M
Sbjct: 678 GNKVHVFLVGDTKHPDAHEVYR----FLEM 703



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 182/410 (44%), Gaps = 52/410 (12%)

Query: 1   MIRGYMQANF--PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF----VH 54
           MI  + +A+   P +SVF  L   D    P++Y+F  L+ A   +G + +  +     +H
Sbjct: 128 MISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSA---VGQMHDLAVSHCTQLH 184

Query: 55  AHVVKFGFGEDPFVVSSLLEFYSLVHKMGT---ARALFDKSPDRDVVTWTTMVDGYGKMG 111
             V K G G    V ++L+  Y      G    AR + D+ P++D +TWTT+V G+ + G
Sbjct: 185 CAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKG 244

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D   AR  FE++     V W+A+++ Y +     E   LFR+M    + P+E    S+L+
Sbjct: 245 DVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLS 304

Query: 172 ACAHLGAITQGLWVHSYAKRYH----LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           ACA+ G    G  VH    R       E  + +  A+V +YSK G +  A  +F+ ++ K
Sbjct: 305 ACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLK 364

Query: 228 DAGAWNA-------------------------------MISGVAMNGDAKKSLELFDRMV 256
           D  +WN                                M+SG    G A+ +L+LF++M 
Sbjct: 365 DVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMR 424

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
               +P + T+   +  C     ++ G  L  ++    G E        ++ + AR G V
Sbjct: 425 SEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQC-GFEASNSAGNALLTMYARCGAV 483

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           ++A + +   M  +   D+  W A++SA   +G       ++ ++   GI
Sbjct: 484 KDA-RLVFLVMPNV---DSVSWNAMISALGQHGHGREALELFDQMVAQGI 529


>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/410 (36%), Positives = 229/410 (55%), Gaps = 8/410 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q      ++  Y  ML  G  PN      LI AC     +   G   H  +V+ 
Sbjct: 287 IIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSE-GQQFHGIIVRT 345

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    F+ ++++ FY+   ++  A   F+      V +W  ++ G+ + G  E AR+LF
Sbjct: 346 GFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLF 405

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MPER+  SWS++++ YS+       L LF +M   G++PNE  +VSV +A A LG + 
Sbjct: 406 DEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLM 465

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAGAWNAMISG 238
           +G W H Y     +  N  L  A++DMY+KCG +  AL +F  I ++      WNA+I G
Sbjct: 466 EGRWAHEYILSNSIPLNDNLNAALIDMYAKCGSITIALQLFYEIQDRVSSVSPWNAIICG 525

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AM+G A  SL+LF ++ +   +P   TF+ VL+ C HA +V  G   F+ M  +Y +EP
Sbjct: 526 LAMHGHANVSLKLFSQLQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEP 585

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            ++HY C++DLL RAG ++EA + I  KM      D  +WG LL+ACR +G +E+G R  
Sbjct: 586 NIKHYGCMIDLLGRAGRLKEAAEMI-RKMP--MKADVVIWGTLLAACRTHGNVEIGERAA 642

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCS 407
             LA++ I+  +  VL  NIY +AG WD +A  VR+ +    MKK PGCS
Sbjct: 643 ENLAKLDISHGAGRVLLSNIYADAGRWD-DAFLVRRAMQSQRMKKSPGCS 691



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 183/408 (44%), Gaps = 57/408 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G  Q N    ++  + DM   G  PN  T   +I A   +G + N  M +HA   K 
Sbjct: 155 MVMGLAQNNCWLEAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRM-LHALSFKL 213

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V ++L+  Y +   +G AR LFD+ P+R+VVTW  M++GY K G  + AR+LF
Sbjct: 214 GLEALNIVATNLVHMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLF 273

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++P ++ VSW  I+  Y +I    E L ++R M   G+ PNE  +V +++AC    A++
Sbjct: 274 ERIPAKDVVSWGTIIDGYVQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVS 333

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G   H    R   +    +   ++  Y+ CG ++ A   FE  S     +WNA+ISG  
Sbjct: 334 EGQQFHGIIVRTGFDCYDFIQATIIHFYAACGEINLAFLQFELGSKDHVSSWNALISGFV 393

Query: 241 MNGDAKKSLELFD-------------------------------RMVKSGTQPTETTFVA 269
            NG  +++ +LFD                                MV  G QP E T V+
Sbjct: 394 RNGMIEQARQLFDEMPERDVFSWSSMISGYSQNEQPDLALQLFHEMVAGGVQPNEITMVS 453

Query: 270 VLTTC-----------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           V +              H  ++ + + L +N++A             ++D+ A+ G +  
Sbjct: 454 VFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAA------------LIDMYAKCGSITI 501

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           A +   E    +     + W A++    ++G   V  +++ +L  + I
Sbjct: 502 ALQLFYEIQDRV--SSVSPWNAIICGLAMHGHANVSLKLFSQLQRVRI 547



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 177/377 (46%), Gaps = 37/377 (9%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T    +K+C  L  L   G  +H+ V K G   + FV +SL+ FY     +  AR+LFD 
Sbjct: 54  TLVSALKSCSSLLALSQ-GQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDT 112

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
               D V+   M+ GY K G  +NAR LFEKMP +  VS++ ++   ++ + + E + +F
Sbjct: 113 CSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVF 172

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           + M+  G+ PNE  L SV++A +H+G I     +H+ + +  LE   I+AT +V MY  C
Sbjct: 173 KDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCVC 232

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR----------------- 254
             + +A  +F+ I  ++   WN M++G + +G    + +LF+R                 
Sbjct: 233 SSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDGYV 292

Query: 255 --------------MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
                         M+++G  P E   V +++ C     V +G   F  +    G +   
Sbjct: 293 QIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEG-QQFHGIIVRTGFDCYD 351

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
              A ++   A  G +  A  F++ ++G       + W AL+S     G IE   +++ +
Sbjct: 352 FIQATIIHFYAACGEINLA--FLQFELG--SKDHVSSWNALISGFVRNGMIEQARQLFDE 407

Query: 361 LAEMGITDFSTHVLSYN 377
           + E  +  +S+ +  Y+
Sbjct: 408 MPERDVFSWSSMISGYS 424



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/274 (20%), Positives = 113/274 (41%), Gaps = 49/274 (17%)

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           E  LVS L +C+ L A++QG  +HS   +  L  N+ +  +++  Y KC  + +A S+F+
Sbjct: 52  ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VK------------------------ 257
             S  D  + N M++G   +G    +  LF++M +K                        
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGV 171

Query: 258 ------SGTQPTETTFVAVLTTCTHAKMVRD-----GLNLFENMSAVYGVEPQLEHYACV 306
                 +G  P E T  +V++  +H   + +      L+    + A+  V   L H  CV
Sbjct: 172 FKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYCV 231

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
              L  A ++ +    I E+       +   W  +L+     G +++   ++ ++    +
Sbjct: 232 CSSLGNARVLFDE---IPER-------NVVTWNVMLNGYSKSGLVDLARDLFERIPAKDV 281

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
             + T +  Y   +  G   EA ++ + +  TG+
Sbjct: 282 VSWGTIIDGYVQIERLG---EALRMYRSMLRTGV 312


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 239/436 (54%), Gaps = 41/436 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + +M+     P+  T   ++ AC     +E  G  VH+ +   
Sbjct: 206 MISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE-LGRQVHSWIDDH 264

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L                               +D Y K G+ E A  LF
Sbjct: 265 GFGSNLKIVNAL-------------------------------IDLYIKCGEVETACGLF 293

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACAHLGAI 
Sbjct: 294 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIE 353

Query: 181 QGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            G W+H Y  +    K V  A    T+++DMY+KCG + +A  VF+ I N+   +WNAMI
Sbjct: 354 IGRWIHVYINKR--LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 411

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G AM+G A  + ++F RM K+  +P + TFV +L+ C+H+ M+  G ++F +M   Y +
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKI 471

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P+LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC++Y  +E+G  
Sbjct: 472 TPKLEHYGCMIDLLGHSGLFKEAEEMINTME---MEPDGVIWCSLLKACKMYANVELGES 528

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             + L ++   +  ++VL  NIY  AG   E  K+R L+++ GMKK PGCS IE++ VV 
Sbjct: 529 YAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVH 588

Query: 417 EFLAGDNRHAQAGEIY 432
           EF+ GD  H +  EIY
Sbjct: 589 EFIIGDKFHPRNREIY 604



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 215/396 (54%), Gaps = 35/396 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  +++ Y+ M+ +G  PN YTFP L+K+C         G  +H HV+K 
Sbjct: 74  MFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFRE-GQQIHGHVLKL 132

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D +V +SL+  Y    ++  AR +FD+S  RDVV++T ++ GY   G   +A+++F
Sbjct: 133 GYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+   + KE L LF++M +  ++P+ES +VSV++ACA   +I 
Sbjct: 193 DEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE 252

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D+Y KCG V +A  +FEG+S KD  +WN +I G  
Sbjct: 253 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 312

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T +++L  C H   +  G  ++++ N   + GV  
Sbjct: 313 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYIN-KRLKGVAN 371

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMG-GLGGGDANVWG------------------ 339
              H   ++D+ A+ G +E A++  +  +   L   +A ++G                  
Sbjct: 372 ASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMR 431

Query: 340 ------------ALLSACRIYGKIEVGNRVWRKLAE 363
                        LLSAC   G +++G  ++R + E
Sbjct: 432 KNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 467



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 140/344 (40%), Gaps = 68/344 (19%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
           N+    L+  C  L  L      +HA ++K G     + +S L+EF  L           
Sbjct: 2   NHPSLSLLHNCKTLQSLR----MIHAQMIKTGLHNTNYALSKLIEFCVL----------- 46

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
             SP  D + +   V               FE + E N + W+ +   ++  SD    L 
Sbjct: 47  --SPHFDGLPYAISV---------------FETIQEPNLLIWNTMFRGHALSSDPVSALY 89

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           L+  M  +G+ PN      +L +CA   A  +G  +H +  +   + ++ + T+++ MY 
Sbjct: 90  LYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYV 149

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAM---------------------------- 241
           + G +  A  VF+  S++D  ++ A+I+G A                             
Sbjct: 150 QNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISG 209

Query: 242 ---NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
               G+ K++LELF  M+K+  +P E+T V+V++ C  +  +  G  +   +   +G   
Sbjct: 210 YAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD-HGFGS 268

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            L+    ++DL  + G VE A    E    GL   D   W  L+
Sbjct: 269 NLKIVNALIDLYIKCGEVETACGLFE----GLSYKDVISWNTLI 308


>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
 gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
          Length = 528

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/431 (32%), Positives = 241/431 (55%), Gaps = 4/431 (0%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           ++Q +  + ++  +  ++  G  P+ +     + A    G  +  G  VH  + + G   
Sbjct: 88  HLQLDNQREAISLFARVVAAGHRPDGFAVVGALSASSGAGD-QVVGRAVHGLIFRLGLDG 146

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           +  V ++L++ YS   K  +A  +FD+   +D VTW +M+ GY K    ++A   F+++P
Sbjct: 147 EVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYIKCAGVDSALSFFDQVP 206

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            R+ V+W+A++  + +       L LF +M   G +P    +V VL+ACA +GA+  G  
Sbjct: 207 VRSVVAWTALITGHVQGRQPVRALELFGRMVLEGHRPTHVTIVGVLSACADIGALDLGRV 266

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H Y  + +   N+I++ A++DMY+K GH+  A SVF+ + +KD+  W  MIS   + GD
Sbjct: 267 IHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKDSFTWTTMISCCTVQGD 326

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            KK+LELF  M+++G  P   TFV+VL+ C+H+ ++ +G+ LF+ M  +Y ++P LEHY 
Sbjct: 327 GKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEGIELFDRMRQLYKIDPLLEHYG 386

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C++DLL R G++EEAE  I +        D  +W +LLSAC + G   +     +++ + 
Sbjct: 387 CMIDLLGRGGLLEEAEALIADMN---VEPDIVIWRSLLSACLVRGNNRLAEIAGKEIVKR 443

Query: 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNR 424
              D   +VL +N+Y  +    EA ++R+ +    + KKPGCS IE++G V EFL  D  
Sbjct: 444 EPGDDGVYVLLWNMYASSNKWREAREMRQQMLSLKIFKKPGCSWIEIDGAVHEFLVEDKT 503

Query: 425 HAQAGEIYRVI 435
           H    EIY  +
Sbjct: 504 HDARREIYETL 514



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 139/300 (46%), Gaps = 36/300 (12%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y   G   +AR+LF+++P  + +S++++M+ + ++ + +E +SLF ++   G +P+   +
Sbjct: 57  YADFGRVADARKLFDEIPNPDLISFTSLMSLHLQLDNQREAISLFARVVAAGHRPDGFAV 116

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           V  L+A +  G    G  VH    R  L+  V++  A++DMYS+CG   SA+ VF+ +S 
Sbjct: 117 VGALSASSGAGDQVVGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSL 176

Query: 227 KD--------------AG-----------------AWNAMISGVAMNGDAKKSLELFDRM 255
           KD              AG                 AW A+I+G        ++LELF RM
Sbjct: 177 KDEVTWGSMLHGYIKCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRM 236

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           V  G +PT  T V VL+ C     +  G  +     +       +     ++D+ A++G 
Sbjct: 237 VLEGHRPTHVTIVGVLSACADIGALDLG-RVIHGYGSKCNASLNIIVSNALMDMYAKSGH 295

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           +E A    +E    +   D+  W  ++S C + G  +    +++ +   G+   S   +S
Sbjct: 296 IEMAFSVFQE----VQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVS 351


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 242/432 (56%), Gaps = 4/432 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    + S+   ++M      P + T   ++ AC  +   ++    VH +V + 
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD-KDLCKRVHEYVSEC 265

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  + ++L+  Y+   +M  A  +F     RDV++WT++V GY + G+ + AR  F
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP R+ +SW+ ++  Y R   F E L +FR+MQ  GM P+E  +VSVLTACAHLG++ 
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+ +Y  +  ++ +V++  A++DMY KCG    A  VF  +  +D   W AM+ G+A
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG  ++++++F +M     QP + T++ VL+ C H+ MV      F  M + + +EP L
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSL 505

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C+VD+L RAG+V+EA + +  KM      ++ VWGALL A R++    +     +K
Sbjct: 506 VHYGCMVDMLGRAGLVKEAYEIL-RKMP--MNPNSIVWGALLGASRLHNDEPMAELAAKK 562

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   + + + L  NIY       +  +VR+ I +  +KK PG S+IEVNG   EF+A
Sbjct: 563 ILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVA 622

Query: 421 GDNRHAQAGEIY 432
           GD  H Q+ EIY
Sbjct: 623 GDKSHLQSEEIY 634



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 183/378 (48%), Gaps = 29/378 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+G+ + +     V  YL+ML  G  P+++TFP L+      G     G  +H HVVKF
Sbjct: 105 MIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKF 164

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G + +V ++L++ YSL   M  AR +FD+    DV +W  M+ GY +M ++E + EL 
Sbjct: 165 GLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELL 224

Query: 121 EKMPERNAVSWSA-----IMAAYSRISDFKEVLSLFRQMQEVGMKPN---ESGLVSVLTA 172
            +M ERN VS ++     +++A S++ D      +   + E   +P+   E+ LV+   A
Sbjct: 225 VEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C  +    +         R    ++VI  T++V  Y + G++  A + F+ +  +D  +W
Sbjct: 284 CGEMDIAVRIF-------RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
             MI G    G   +SLE+F  M  +G  P E T V+VLT C H   +  G         
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-----EWIK 391

Query: 293 VYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            Y  + ++++   V    +D+  + G  E+A+K   +    +   D   W A++      
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHD----MDQRDKFTWTAMVVGLANN 447

Query: 349 GKIEVGNRVWRKLAEMGI 366
           G+ +   +V+ ++ +M I
Sbjct: 448 GQGQEAIKVFFQMQDMSI 465



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 133/296 (44%), Gaps = 19/296 (6%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    A +LF K+PE + V W+ ++  +S++    E + L+  M + G+ P+      +L
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 171 TACAHL-GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
                  GA+  G  +H +  ++ L  N+ +  A+V MYS CG +  A  VF+    +D 
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +WN MISG     + ++S+EL   M ++   PT  T + VL+ C+  K  +D       
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHE 260

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
             +    EP L     +V+  A  G ++ A +        +   D   W ++     + G
Sbjct: 261 YVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR----SMKARDVISWTSI-----VKG 311

Query: 350 KIEVGNRVWRKLA-----EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
            +E GN    KLA     +M + D  +  +  + Y  AG   E+ ++ + +   GM
Sbjct: 312 YVERGN---LKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 267/511 (52%), Gaps = 81/511 (15%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIRG +   + K  L++  Y  M D G  PNN+T+P +  AC  L  L N G   H+ V+
Sbjct: 96  MIRG-LTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVL-NHGQCAHSGVL 153

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D  V  SL+  YS   ++G AR +FD+  ++D+V+W +M+ GY +MG   +A  
Sbjct: 154 KSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVG 213

Query: 119 LFEKM------PERNAV----------------SW-----------------SAIMAAYS 139
           LF +M      P+   +                SW                 SA++  Y 
Sbjct: 214 LFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYG 273

Query: 140 RISDFKEVLSLFRQ-------------------------------MQEVGMKPNESGLVS 168
           +  D      +F +                               M+E G+ P++  LV 
Sbjct: 274 KCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVG 333

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL+ACA +GA+  G W+ +YA    L+ ++ ++TA++DMY+KCG +  AL VFE +  K+
Sbjct: 334 VLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQKN 393

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSG--TQPTETTFVAVLTTCTHAKMVRDGLNL 286
             +WNAMIS +A +G  ++SL LF RM K G   +P + +F+ VL+ C HA +V +G  L
Sbjct: 394 EVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGRQL 453

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
           F+ MS+ +G+ P++EH++C+VDLLARAG V EA  FI EKM      D  V GALL AC+
Sbjct: 454 FDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFI-EKMP--EKPDEVVLGALLGACQ 510

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPG 405
               ++V  RV   L EM   +   +++S  I+     WD ++ ++R L+ + G+ K PG
Sbjct: 511 KRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWD-DSARMRVLMRQRGVTKTPG 569

Query: 406 CSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           CS IE+   V EF AGD  H  + ++ +VI+
Sbjct: 570 CSWIEIENQVHEFHAGDVLHFISQDMCQVIN 600


>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 787

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 241/438 (55%), Gaps = 11/438 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++  + Q    K +V  Y  ML  G  PN   F  ++ AC  L  L + G  +H   +K 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS-GRKIHNQTLKM 407

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               + FV S+L++ Y    ++  A+ +F   P +++V W +++ GY        A ELF
Sbjct: 408 ACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELF 467

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMP RN  SW++I++ Y++   F + L  F  M   G  P E    SVL ACA L ++ 
Sbjct: 468 KKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLE 527

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH+   +  +++++ + TA+ DMY+K G + S+  VF  +  ++  AW AMI G+A
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A++S+ LF+ M+ +G  P E TF+A+L  C+H+ +V   ++ FE M A  G+ P+ 
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKA 646

Query: 301 EHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +HY C+VD+LARAG + EAE     IE K       +AN W ALLSAC IY   E+G R 
Sbjct: 647 KHYTCMVDVLARAGHLAEAEDLLLKIESK------SEANSWAALLSACNIYRNKEMGERA 700

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            ++L E+   + + +VL  N+Y   G   +A ++R L+    +KK  GCS +++ G  + 
Sbjct: 701 AKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQIRGQYQA 760

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F + + +H    ++Y ++
Sbjct: 761 FFSWETKHPLLPDVYEML 778



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 199/437 (45%), Gaps = 69/437 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG----PLENFGMFVHAH 56
           MI G++    PK ++  + +ML  G  PN  T   +IKAC+  G     +   G+ + ++
Sbjct: 216 MIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSN 275

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           ++    G    V +SL+  Y        AR +FD+   RDVV+WT ++D Y ++GD E A
Sbjct: 276 LLDKNLG----VRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R + ++MPERN VSW  ++A + +  + KE +SL+ QM   G +PN S   SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +  G  +H+   +     NV +++A++DMY KC  +  A  +F  +  K+   WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 237 SGVAMNGDAKKSLELFDR-------------------------------MVKSGTQPTET 265
           SG + N    ++ ELF +                               M+ SG  P E 
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 266 TFVAVLTTCT-----------HAKMVRDGL--NLF--ENMSAVYGVEPQLEH-------- 302
           TF +VL  C            HAK+++ G+  ++F    +S +Y     L+         
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEM 571

Query: 303 -------YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
                  +  ++  LA  G  EE+    E+ +      +   + A+L AC   G +E   
Sbjct: 572 PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM 631

Query: 356 RVWRKLAEMGITDFSTH 372
             +  +   GI+  + H
Sbjct: 632 HYFEMMQACGISPKAKH 648



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 153/343 (44%), Gaps = 37/343 (10%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           PF    ++  +     + +AR LFD  P+R VV++TTMVD   K G   +A EL+ + P 
Sbjct: 148 PFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
            +   ++A++A +      K+ L +F +M   G+ PNE  LVSV+ AC   G     + +
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 186 HSYAKRYH-LEKN-------------------------------VILATAVVDMYSKCGH 213
              A + + L+KN                               V+  TA++D+Y++ G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  V + +  ++  +W  +++     G+AK+++ L+ +M+  G +P  + F +VL  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C   + +R G  +  N +        +   + ++D+  +   + +A+         L   
Sbjct: 388 CASLQDLRSGRKI-HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY----SLPQK 442

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +   W +L+S      K+     +++K+    +  +++ +  Y
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGY 485


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/438 (35%), Positives = 243/438 (55%), Gaps = 41/438 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++      ++  +L M      PN  TF  ++ AC  +G L + G  VH  V K 
Sbjct: 177 LISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVACGRMGYL-SMGKGVHGLVYKR 232

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG                                 +V    +VD Y K      AR+LF
Sbjct: 233 AFG-------------------------------IGLVVGNALVDMYVKCECLCEARKLF 261

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P+R+ VSW++I++   +    K+ L LF  MQ  G++P+   L SVL+ACA LGA+ 
Sbjct: 262 DELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALD 321

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WV  Y +R  +E ++ + TA+VDMY+KCG +  AL +F GI N++   WNA++ G+A
Sbjct: 322 YGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLA 381

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM-SAVYGVEPQ 299
           M+G   ++L+ F+ M+ +G +P E TF+A+LT C H+ +V +G + F  M S  +   P+
Sbjct: 382 MHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPR 441

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C++DLL RAG+++EA KFI          D  +WGALLSAC+  G +E+   +  
Sbjct: 442 LEHYGCMIDLLCRAGLLDEAYKFIRNMP---LPPDVLIWGALLSACKANGNVELSQEILS 498

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L E+   D   +VL  NIY     WD +  +VR+L+ + G++K PG SVIEV+G   EF
Sbjct: 499 HLLELKSQDSGVYVLLSNIYATNERWD-DVTRVRRLMKDKGIRKFPGSSVIEVDGEAHEF 557

Query: 419 LAGDNRHAQAGEIYRVIH 436
           L GD  H++  +I+ +++
Sbjct: 558 LVGDTNHSRNEDIHILLN 575



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 162/350 (46%), Gaps = 42/350 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVK 59
           +I  Y  +  PK +   Y  ++  GF P+ YTFP ++KAC   LG  E  G  VH   VK
Sbjct: 76  LIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQE--GEQVHGVAVK 133

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  D +V +SLL FYS+  K G A  +FD+   RDVV+WT ++ GY + G F+ A  L
Sbjct: 134 MGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINL 193

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F KM                                   + PN +  VSVL AC  +G +
Sbjct: 194 FLKMD----------------------------------VVPNVATFVSVLVACGRMGYL 219

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           + G  VH    +      +++  A+VDMY KC  +  A  +F+ + ++D  +W ++ISG+
Sbjct: 220 SMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGL 279

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
                 K SLELF  M  SG +P      +VL+ C     +  G  + E +    G+E  
Sbjct: 280 VQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIER-QGIEWD 338

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +     +VD+ A+ G +E A         G+   +   W ALL    ++G
Sbjct: 339 IHIGTALVDMYAKCGCIEMALHIFN----GIPNRNIFTWNALLGGLAMHG 384



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 91/222 (40%), Gaps = 32/222 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH++  G   D FV+S + EF+     +G     FD                      
Sbjct: 24  IHAHLIASGLLHDEFVLSKVSEFFG--KHIGFVDYAFD---------------------- 59

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F N  +L         + ++ ++AAY+     K    ++ ++   G  P+      VL A
Sbjct: 60  FLNQTDL-----HVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKA 114

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C     + +G  VH  A +     ++ +  +++  YS CG    A  VF+ +  +D  +W
Sbjct: 115 CTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSW 174

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             +ISG    G   +++ LF +M      P   TFV+VL  C
Sbjct: 175 TGLISGYVRTGLFDEAINLFLKM---DVVPNVATFVSVLVAC 213


>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
 gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
          Length = 554

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 154/450 (34%), Positives = 253/450 (56%), Gaps = 19/450 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR + ++  P  S+  +  ML     P+ +T+  L+ AC     L   G  VH+ V+  
Sbjct: 97  MIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLSLRE-GQQVHSKVLTN 155

Query: 61  GF-GEDPFVVSSLLEFYSLV-----HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE 114
           G+   + F++S L+ FY+ V       + +AR +FD   +R+VV W +M+ GY + G+ +
Sbjct: 156 GYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERNVVCWNSMLAGYMRRGNLD 215

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
            AR +F +MPERN VSW+ +++ Y++    K+ L+LF QM++ G++ ++  L++ LTACA
Sbjct: 216 GARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALTACA 275

Query: 175 HLGAITQGLWVHSYAKRYHLEKN----VILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            LG +  G+W+HSY +   +  N    V L  A++ MY+ CG +  A  VF  +  + A 
Sbjct: 276 ELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAV 335

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGT---QPTETTFVAVLTTCTHAKMVRDGLNLF 287
           +W ++I+  A  G A+  LE+F  M + GT   +P   TF+ VL  C+HA +V +G  LF
Sbjct: 336 SWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLVDEGRQLF 395

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
           ++M   +G++P++EHY C+VDLL+RAG ++EA++ I      +   +A VWGALL  CR 
Sbjct: 396 KDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATM--PVKPNNA-VWGALLGGCRF 452

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSY--NIYKEAGWDMEANKVRKLISETGMKKKPG 405
           Y   E+ + V +KL      D +   LS    +Y  A    +   VR+ +   G+KK  G
Sbjct: 453 YRNAELASLVSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGVKKPAG 512

Query: 406 CSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            S +++N V  + +AGD  H     IY ++
Sbjct: 513 QSWVQINEVFHDSVAGDRTHENTSSIYEML 542



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/297 (20%), Positives = 126/297 (42%), Gaps = 50/297 (16%)

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           +A  +F+ +   + + W+ ++ A++R     + +  F QM     +P+      +L AC 
Sbjct: 78  SAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACT 137

Query: 175 HLGAITQGLWVHS-------YAKRYHL------------------------------EKN 197
              ++ +G  VHS       Y+    L                              E+N
Sbjct: 138 SSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALASARKVFDDMSERN 197

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V+   +++  Y + G++  A  +F  +  ++  +W  MISG A NG  K++L LFD+M K
Sbjct: 198 VVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRK 257

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARAG 314
           +G +  +   +A LT C     ++ G+ +   +   +    Q   +     ++ + A  G
Sbjct: 258 AGVELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCG 317

Query: 315 MVEEAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           M++EA    +++ E+        A  W +L++A    G  +    ++R +  +G ++
Sbjct: 318 MIDEAYEVFRWMPER-------SAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSE 367



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 13/175 (7%)

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           S   H+ SA  VF+ I +     WN MI   A +    KS++ F++M+ + ++P   T+ 
Sbjct: 71  SSAHHLLSAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYS 130

Query: 269 AVLTTCTHAKMVRDGLNLFENM-------SAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            +L  CT +  +R+G  +   +       S V+ +   +  YA VV        +  A K
Sbjct: 131 FLLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVG--GEGAALASARK 188

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
             ++    +   +   W ++L+     G ++   R++ ++ E  +  ++T +  Y
Sbjct: 189 VFDD----MSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGY 239


>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
          Length = 655

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 246/442 (55%), Gaps = 38/442 (8%)

Query: 1   MIRGYMQANFP-KLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIRG  Q+  P K  V  +  M+  G+  PN +T   ++KAC I+  LE  G  VHA+V+
Sbjct: 130 MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEE-GQQVHANVL 188

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GFG  PFV ++L+ FY+                               K  D   A +
Sbjct: 189 KSGFGSSPFVETALVNFYA-------------------------------KCEDIVLASK 217

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+++ +RN V+WS +++ Y+RI    E L LFR MQ+ G+ P+E  +VSV++ACA  GA
Sbjct: 218 VFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGA 277

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G WVH+Y  +  +E ++ L+TA+V+MY+KCG +  A  VF+ +  KD  AW++MI G
Sbjct: 278 LDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG 337

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A+NG A+ +LE F RM ++  +P   TF+ VL+ C H+ +V +G   + +M   +G+ P
Sbjct: 338 LAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVP 396

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +E Y C+VDLL RA +VE+A   +E         +  +W  LL  C+    ++    V 
Sbjct: 397 SMELYGCMVDLLCRASLVEDACTLVETMP---ISPNPVIWRTLLVGCKKSKNLDKSEVVA 453

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           ++L E+   +   ++L  N+Y       + ++VRK +   G+K  PGCS IEV+G+V EF
Sbjct: 454 QRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEF 513

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
           + GD  H +A E+  ++    K
Sbjct: 514 VMGDWSHPEAMEVREILRDISK 535



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 135/296 (45%), Gaps = 46/296 (15%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGM-KPNESGLVS 168
           GD + AR+LF ++   N  SW++++   S+  +  KE + LFR+M   G   PN   +  
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL AC+ + A+ +G  VH+   +     +  + TA+V+ Y+KC  +  A  VF+ I++++
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNL 286
             AW+ MISG A  G   ++L LF  M K+G  P E T V+V++ C  +  +  G  ++ 
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL----- 341
           + N      +E  LE    +V++ A+ G +E A    +E    +   D   W ++     
Sbjct: 287 YINKQL---IETDLELSTALVNMYAKCGCIERA----KEVFDAMPVKDTKAWSSMIVGLA 339

Query: 342 ------------------------------LSACRIYGKIEVGNRVWRKLAEMGIT 367
                                         LSAC   G +  G R W  + E GI 
Sbjct: 340 INGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIV 395



 Score = 43.1 bits (100), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 34/242 (14%)

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMN-GDAKKSLELFDRMVKSG-TQPTETTFVA 269
           G +  A  +F  I   +  +WN+MI G + +   +K+ + LF +MV+ G   P   T   
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 166

Query: 270 VLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQLE-----HYACVVDLL------------- 310
           VL  C+    + +G  +  N + + +G  P +E      YA   D++             
Sbjct: 167 VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 226

Query: 311 -----------ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
                      AR G+V EA     +        D     +++SAC   G ++ G  V  
Sbjct: 227 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 286

Query: 360 KLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV-IEVNGVVEE 417
            + +  I TD        N+Y + G    A +V   +     K      V + +NG+ E+
Sbjct: 287 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 346

Query: 418 FL 419
            L
Sbjct: 347 AL 348


>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
           [Vitis vinifera]
          Length = 485

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/412 (36%), Positives = 240/412 (58%), Gaps = 9/412 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLEN-FGMFVHAHVVK 59
           MI+GY      + S+  +  M + G  P+ +TF PL+K+C   G  +N  G  VH  V+ 
Sbjct: 78  MIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCS--GICDNRIGKGVHGVVIV 135

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF     +   +++ Y+   +M  A+ +FD+  DRDV+ W  M+ G+ K+GD E    L
Sbjct: 136 VGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRL 195

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M +R+ VSW++++A   +     E L LFR+M + G +P+++ +V++L  CA LGA+
Sbjct: 196 FRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAV 255

Query: 180 TQGLWVHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             G W+HSYA+   L ++ I +  ++VD Y KCG + +A  VF  +  K+  +WNAMISG
Sbjct: 256 DVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVSWNAMISG 315

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +  NG  +   +LF+ M+  G +P + TFV VL+ C HA +V  G NLF +M+  + +EP
Sbjct: 316 LTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEP 375

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEH+ C+VDLLAR G +EEA   +          +A +WG+LLSA R  G ++      
Sbjct: 376 KLEHFGCMVDLLARNGCMEEARDLVRTMP---MRPNAVLWGSLLSAYRTIGDVKHAECAV 432

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVI 409
           ++L E+   +   +VL  N+Y E G WD E  KVR L+ E  ++K PG S++
Sbjct: 433 KELIELEPWNSGNYVLLSNVYAEDGKWD-EVEKVRALMKEKNIRKNPGQSMV 483



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/324 (21%), Positives = 148/324 (45%), Gaps = 24/324 (7%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HAH+++    +   ++S  +     + KMG A  +F ++ + +++ + +M+ GY   G 
Sbjct: 28  IHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGYSLCGP 87

Query: 113 FENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES---G 165
            EN+  LF +M  R    +  +++ ++ + S I D +    +   +  VG +   S   G
Sbjct: 88  SENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIG 147

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYH---LEKNVILATAVVDMYSKCGHVHSALSVFE 222
           ++ + T+C  +            AK+     L+++VI+   ++  + K G +     +F 
Sbjct: 148 IIDLYTSCGRM----------EDAKKVFDEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFR 197

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            + ++   +WN+MI+G+  +G   ++LELF  M   G +P + T V +L  C     V  
Sbjct: 198 QMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDV 257

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G  +     +   +   +     +VD   + G++E A +   E    +   +   W A++
Sbjct: 258 GEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNE----MPQKNVVSWNAMI 313

Query: 343 SACRIYGKIEVGNRVWRKLAEMGI 366
           S     GK E+G  ++ ++   G+
Sbjct: 314 SGLTFNGKGELGADLFEEMINKGV 337



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/274 (21%), Positives = 123/274 (44%), Gaps = 27/274 (9%)

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           TQ   +H++  R+HL ++  + +  + +      +  A  VF    N +   +N+MI G 
Sbjct: 23  TQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQNPNLLLFNSMIKGY 82

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT--------HAKMVRDGLNLFENMS 291
           ++ G ++ SL LF +M   G  P E TF  +L +C+                +  FE  S
Sbjct: 83  SLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFS 142

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
           ++            ++DL    G +E+A+K  +E +      D  VW  ++      G I
Sbjct: 143 SI---------RIGIIDLYTSCGRMEDAKKVFDEML----DRDVIVWNMMIRGFCKVGDI 189

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGC--SVI 409
           E+G R++R++ +  +  +++ +      +++G D EA ++ + + + G +       +++
Sbjct: 190 EMGFRLFRQMRDRSVVSWNSMIAG---LEQSGRDGEALELFREMWDHGFEPDDATVVTIL 246

Query: 410 EVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443
            V   +     G+  H+ A E  R++  F+ + N
Sbjct: 247 PVCARLGAVDVGEWIHSYA-ESSRLLRDFISVGN 279


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 250/439 (56%), Gaps = 38/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY+     ++++  Y +M++ G EP+N+T+P L+KAC  L  +   G  +H HV K 
Sbjct: 104 MIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIRE-GKQIHGHVFKL 162

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL                               ++ YG+ G+ E +  +F
Sbjct: 163 GLEADVFVQNSL-------------------------------INMYGRCGEMELSSTVF 191

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
           EK+  ++A SWS++ +A   +  + E L LFR+M +E  +K  ESG+VS L+ACA+ GA+
Sbjct: 192 EKLEFKSAASWSSMFSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGAL 251

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +H +  R   E N+I+ T++VDMY KCG + +AL +F+ +  ++   ++AMISG 
Sbjct: 252 NLGMSIHGFLLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGF 311

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G+ + +L +F  M+K G +P    +V++L  C+H+ +V++G  +F  M     VEP 
Sbjct: 312 ALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPT 371

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHY C+VDLL RAG++EEA + I+     +   D  VW + LS CR++  IE+G    +
Sbjct: 372 AEHYGCLVDLLGRAGLLEEALETIQSI--PIEQNDV-VWRSFLSQCRVHQNIELGQIAAQ 428

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L ++   +   ++L  N+Y +A  WD +  + R  I+  G+K+ PG S ++V G    F
Sbjct: 429 ELLKLCSHNPGDYLLISNMYSQAHMWD-DVARSRTEIAIKGLKQTPGFSTVKVKGKTHRF 487

Query: 419 LAGDNRHAQAGEIYRVIHS 437
           ++ D  H Q  EIY+++H 
Sbjct: 488 VSQDRSHPQCKEIYKMLHQ 506



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 130/284 (45%), Gaps = 19/284 (6%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F  + +     +  ++  Y     F+  L  + +M E G++P+      +L AC  
Sbjct: 86  AASIFRGIDDPCTFDFKTMIRGYVNEMSFEVALCFYNEMMERGIEPDNFTYPCLLKACTR 145

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L AI +G  +H +  +  LE +V +  ++++MY +CG +  + +VFE +  K A +W++M
Sbjct: 146 LKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSM 205

Query: 236 ISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLN----LFENM 290
            S     G   + L LF  M + +  +  E+  V+ L+ C +   +  G++    L  N+
Sbjct: 206 FSACVGMGMWSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNI 265

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE--EKMGGLGGGDANVWGALLSACRIY 348
           S     E  +     +VD+  + G ++ A    +  EK   L       + A++S   ++
Sbjct: 266 S-----ELNIIVKTSLVDMYVKCGCIDNALHIFQKMEKRNNL------TYSAMISGFALH 314

Query: 349 GKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV 391
           G+ E   R++ ++ + G+  D   +V   N    +G   E  +V
Sbjct: 315 GEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRV 358


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/442 (35%), Positives = 246/442 (55%), Gaps = 38/442 (8%)

Query: 1   MIRGYMQANFP-KLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIRG  Q+  P K  V  +  M+  G+  PN +T   ++KAC I+  LE  G  VHA+V+
Sbjct: 61  MIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEE-GQQVHANVL 119

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GFG  PFV ++L+ FY+                               K  D   A +
Sbjct: 120 KSGFGSSPFVETALVNFYA-------------------------------KCEDIVLASK 148

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+++ +RN V+WS +++ Y+RI    E L LFR MQ+ G+ P+E  +VSV++ACA  GA
Sbjct: 149 VFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGA 208

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G WVH+Y  +  +E ++ L+TA+V+MY+KCG +  A  VF+ +  KD  AW++MI G
Sbjct: 209 LDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVG 268

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A+NG A+ +LE F RM ++  +P   TF+ VL+ C H+ +V +G   + +M   +G+ P
Sbjct: 269 LAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLE-FGIVP 327

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +E Y C+VDLL RA +VE+A   +E         +  +W  LL  C+    ++    V 
Sbjct: 328 SMELYGCMVDLLCRASLVEDACTLVETMP---ISPNPVIWRTLLVGCKKSKNLDKSEVVA 384

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           ++L E+   +   ++L  N+Y       + ++VRK +   G+K  PGCS IEV+G+V EF
Sbjct: 385 QRLLELEPHNAENYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEF 444

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
           + GD  H +A E+  ++    K
Sbjct: 445 VMGDWSHPEAMEVREILRDISK 466



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 135/296 (45%), Gaps = 46/296 (15%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGM-KPNESGLVS 168
           GD + AR+LF ++   N  SW++++   S+  +  KE + LFR+M   G   PN   +  
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL AC+ + A+ +G  VH+   +     +  + TA+V+ Y+KC  +  A  VF+ I++++
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNL 286
             AW+ MISG A  G   ++L LF  M K+G  P E T V+V++ C  +  +  G  ++ 
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL----- 341
           + N      +E  LE    +V++ A+ G +E A    +E    +   D   W ++     
Sbjct: 218 YINKQL---IETDLELSTALVNMYAKCGCIERA----KEVFDAMPVKDTKAWSSMIVGLA 270

Query: 342 ------------------------------LSACRIYGKIEVGNRVWRKLAEMGIT 367
                                         LSAC   G +  G R W  + E GI 
Sbjct: 271 INGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSMLEFGIV 326



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 34/242 (14%)

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMN-GDAKKSLELFDRMVKSG-TQPTETTFVA 269
           G +  A  +F  I   +  +WN+MI G + +   +K+ + LF +MV+ G   P   T   
Sbjct: 38  GDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNPNTFTMAF 97

Query: 270 VLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQLE-----HYACVVDLL------------- 310
           VL  C+    + +G  +  N + + +G  P +E      YA   D++             
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 311 -----------ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
                      AR G+V EA     +        D     +++SAC   G ++ G  V  
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 360 KLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV-IEVNGVVEE 417
            + +  I TD        N+Y + G    A +V   +     K      V + +NG+ E+
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 277

Query: 418 FL 419
            L
Sbjct: 278 AL 279


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 242/432 (56%), Gaps = 4/432 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    + S+   ++M      P + T   ++ AC  +   ++    VH +V + 
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD-KDLCKRVHEYVSEC 265

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  + ++L+  Y+   +M  A  +F     RDV++WT++V GY + G+ + AR  F
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP R+ +SW+ ++  Y R   F E L +FR+MQ  GM P+E  +VSVLTACAHLG++ 
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+ +Y  +  ++ +V++  A++DMY KCG    A  VF  +  +D   W AM+ G+A
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG  ++++++F +M     QP + T++ VL+ C H+ MV      F  M + + +EP L
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSL 505

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C+VD+L RAG+V+EA + +  KM      ++ VWGALL A R++    +     +K
Sbjct: 506 VHYGCMVDMLGRAGLVKEAYEIL-RKMP--MNPNSIVWGALLGASRLHNDEPMAELAAKK 562

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   + + + L  NIY       +  +VR+ I +  +KK PG S+IEVNG   EF+A
Sbjct: 563 ILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVA 622

Query: 421 GDNRHAQAGEIY 432
           GD  H Q+ EIY
Sbjct: 623 GDKSHLQSEEIY 634



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 183/378 (48%), Gaps = 29/378 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+G+ + +     V  YL+ML  G  P+++TFP L+      G     G  +H HVVKF
Sbjct: 105 MIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKF 164

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G + +V ++L++ YSL   M  AR +FD+    DV +W  M+ GY +M ++E + EL 
Sbjct: 165 GLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELL 224

Query: 121 EKMPERNAVSWSA-----IMAAYSRISDFKEVLSLFRQMQEVGMKPN---ESGLVSVLTA 172
            +M ERN VS ++     +++A S++ D      +   + E   +P+   E+ LV+   A
Sbjct: 225 VEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C  +    +         R    ++VI  T++V  Y + G++  A + F+ +  +D  +W
Sbjct: 284 CGEMDIAVRIF-------RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
             MI G    G   +SLE+F  M  +G  P E T V+VLT C H   +  G         
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-----EWIK 391

Query: 293 VYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            Y  + ++++   V    +D+  + G  E+A+K   +    +   D   W A++      
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHD----MDQRDKFTWTAMVVGLANN 447

Query: 349 GKIEVGNRVWRKLAEMGI 366
           G+ +   +V+ ++ +M I
Sbjct: 448 GQGQEAIKVFFQMQDMSI 465



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 133/296 (44%), Gaps = 19/296 (6%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    A +LF K+PE + V W+ ++  +S++    E + L+  M + G+ P+      +L
Sbjct: 82  GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141

Query: 171 TACAHL-GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
                  GA+  G  +H +  ++ L  N+ +  A+V MYS CG +  A  VF+    +D 
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +WN MISG     + ++S+EL   M ++   PT  T + VL+ C+  K  +D       
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHE 260

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
             +    EP L     +V+  A  G ++ A +        +   D   W ++     + G
Sbjct: 261 YVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR----SMKARDVISWTSI-----VKG 311

Query: 350 KIEVGNRVWRKLA-----EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
            +E GN    KLA     +M + D  +  +  + Y  AG   E+ ++ + +   GM
Sbjct: 312 YVERGN---LKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 244/419 (58%), Gaps = 8/419 (1%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G  PN  TF  L  AC     L + G  +H H +K GF  D + +++L++ Y+ + 
Sbjct: 1   MLLKGCPPNELTFTFLFPACASFYSLLH-GKVIHTHFIKSGFDFDVYALTALVDMYAKLG 59

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
            +  AR +FD+   RD+ TW +++ GY + GD E A ELF+ MP R+ VSW+ +++ YS+
Sbjct: 60  VLMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQ 119

Query: 141 ISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
              + + L +F +M+ +  ++PNE  + SV +ACA LGA+  G  + SYA+   L KN+ 
Sbjct: 120 NGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLY 179

Query: 200 LATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           ++  +++MY++CG + +A  VF  I   ++  +WN+M+ G+A++G + ++L+L+D+M+  
Sbjct: 180 VSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGE 239

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G +P + TFV ++  CTH  +V  G  LF++M   + + P+LEHY C+VDLL RAG ++E
Sbjct: 240 GIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQE 299

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           A   ++         D+ +WG LL AC  +  +E        L ++   +   +V+  NI
Sbjct: 300 AYDLVKSMP---MKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYVILCNI 356

Query: 379 YKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           Y  A  WD  A K+RKL+    + K  G SVIE  G + +F+  D  H +  EIY +++
Sbjct: 357 YASAQRWDGVA-KLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSHPRHYEIYALLN 414


>gi|357142899|ref|XP_003572730.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Brachypodium distachyon]
          Length = 497

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 235/420 (55%), Gaps = 46/420 (10%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P++ +    + +C  L P       +H+  V+ G   D ++V++ +  Y     + +A  
Sbjct: 74  PDHLSISFSLHSCTRL-PCHPIASLLHSFAVRLGHAGDVYIVNAAVSAYFTAADVASAER 132

Query: 88  LF-DKSPD-RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI---- 141
           LF D S D  DVVTWTTMV G+ + GD E AR  F+ MPERN VSW+A++ AY+      
Sbjct: 133 LFSDTSKDVADVVTWTTMVAGHARAGDVERARWFFDAMPERNVVSWNAMLGAYASAGMLS 192

Query: 142 --------------------------SDF-KEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
                                     SD  +E L +F  M   G+ PNES LVSV++ACA
Sbjct: 193 EARKLFDGMHSRNAATWSSMVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACA 252

Query: 175 HLGAITQGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            L ++  G+WVH+Y KR  H   +VILATA+VDMY KCG +H+A+ VF  +  ++  +WN
Sbjct: 253 QLRSLEHGVWVHAYVKRELHGSMSVILATAIVDMYGKCGCIHNAIRVFAAMPVRNIYSWN 312

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           +MI+G+AMNG   ++L LF +M  +G QP + TF+ +L  C+H+ +V +G  LF  M   
Sbjct: 313 SMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVDEGRWLFNRMVND 372

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIE----EKMGGLGGGDANVWGALLSACRIYG 349
           +G++P  EHY  +VDLL RAG+V+EA  F++    E   GL       WGAL  AC I+G
Sbjct: 373 FGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGL-------WGALAGACNIHG 425

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
           ++E+G  + +KL E+     S ++L  NIY  +    +   VR+LI E  + K  G +V+
Sbjct: 426 EVELGEEIAKKLIELEPRHGSRYILLSNIYGTSSRWEDMATVRRLIKERKVSKGTGNAVV 485



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 33/259 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G +Q++  + ++  + DM+  G  PN      +I AC  L  LE+ G++VHA+V + 
Sbjct: 212 MVTGLVQSDHCEEALRVFSDMVARGVVPNESILVSVISACAQLRSLEH-GVWVHAYVKRE 270

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G    +++                              T +VD YGK G   NA  +F
Sbjct: 271 LHGSMSVILA------------------------------TAIVDMYGKCGCIHNAIRVF 300

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP RN  SW++++   +      + LSLF +MQ  G++PN+   + +L AC+H G + 
Sbjct: 301 AAMPVRNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVQPNDITFIGLLGACSHSGLVD 360

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G W+ +     + ++        +VD+  + G V  A+   + +      G W A+   
Sbjct: 361 EGRWLFNRMVNDFGIQPVPEHYGLMVDLLGRAGLVKEAVDFVKNMPVEPHPGLWGALAGA 420

Query: 239 VAMNGDAKKSLELFDRMVK 257
             ++G+ +   E+  ++++
Sbjct: 421 CNIHGEVELGEEIAKKLIE 439


>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
          Length = 496

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/412 (36%), Positives = 232/412 (56%), Gaps = 9/412 (2%)

Query: 28  PNNYTFPPLIKACV--ILGPLEN-FGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           PN+ T   ++ AC      PL +   + +HA  +K  F     + + L  FY        
Sbjct: 67  PNDVTLLTVLSACADSPSSPLASPLALTLHARALKL-FPSHLLLSTCLARFYLASRLPHL 125

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A  LFD  P R VVT+ TM+ G  + G  + A E+F+ MP  + VSW+A++  + +    
Sbjct: 126 ALQLFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRH 185

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E +  FR M   G++ +   LV+V++ACA +GA+  G+WVH    R  LE+NV +A ++
Sbjct: 186 DEAIDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLERNVRVANSL 245

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY++CG V+ A  VF  I  +   +WN+MI G A NG    ++ELF+ M + G +P  
Sbjct: 246 IDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFEEMRRQGFKPDA 305

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            T   VLT C+HA +   GL  ++ M+  YGV  ++EHY CVVDLL RAG ++EA   +E
Sbjct: 306 VTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRAGRLDEAMHVVE 365

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +  V GALL+ CR +G +++  ++ + L E+     + +VL  NIY   G 
Sbjct: 366 TMP---MRPNEVVLGALLAGCRTHGNLDMAEQMMQHLFELDPQGDANYVLLSNIYAAVGK 422

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           WD  A KVR L+   G+KK+PG S +E++G V EF++GD  H  AGEI +++
Sbjct: 423 WD-GAGKVRSLMKARGVKKRPGHSTVEIDGDVHEFVSGDQSHPLAGEIGQML 473



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 106/245 (43%), Gaps = 17/245 (6%)

Query: 89  FDKSP---DRDVVTWTTMVDGYGKMGDFENARELFEKM------PERNAVSWSAIMAAY- 138
           F ++P    RDVV+WT+ +    + GD   A      M      P  N V+   +++A  
Sbjct: 21  FQRAPRHAPRDVVSWTSTISRAARQGDLHAAAASLCAMVSSPAAPAPNDVTLLTVLSACA 80

Query: 139 -SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
            S  S     L+L    + + + P+   L+S   A  +L +    L +  +       ++
Sbjct: 81  DSPSSPLASPLALTLHARALKLFPSHL-LLSTCLARFYLASRLPHLALQLFDSMP--VRS 137

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V+    ++    + G V +A  VF+G+   D  +W A+I G   NG   ++++ F  M+ 
Sbjct: 138 VVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLL 197

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLF-ENMSAVYGVEPQLEHYACVVDLLARAGMV 316
            G +    T VAV++ C     +  GL ++   +     +E  +     ++D+ AR G V
Sbjct: 198 DGVETDYITLVAVVSACAEVGAL--GLGMWVHRLVLRQRLERNVRVANSLIDMYARCGQV 255

Query: 317 EEAEK 321
             A +
Sbjct: 256 NLAAQ 260


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 151/445 (33%), Positives = 248/445 (55%), Gaps = 49/445 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVK 59
           MI G+++    +     + +++  G +P+N++ P +IKAC   +G +   G  +H+ V+K
Sbjct: 72  MIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLI--MGRLIHSTVLK 129

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D FV S                               T+VD Y K G  +NA++L
Sbjct: 130 NGLHLDNFVCS-------------------------------TLVDMYAKCGMIDNAKQL 158

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP+++ V+ + ++A Y+      E   LF QM+  G  P++  +V+++ ACA LGA+
Sbjct: 159 FDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAM 218

Query: 180 TQGLWVHSY--AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +   VH Y  A+RY L+  V L TA++DMY+KCG + S+  +F+ +  K+  +W+AMI 
Sbjct: 219 NKARLVHDYVCARRYSLD--VELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIG 276

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
               +G  +++LELF  M+ SG  P   TF+++L  C+HA +V DGL LF  MS  YGV 
Sbjct: 277 AYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVR 336

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIE----EKMGGLGGGDANVWGALLSACRIYGKIEV 353
           P ++HY C+VDLL RAG +++A + IE    EK       D  +W A L ACRI+ ++++
Sbjct: 337 PDVKHYTCMVDLLGRAGRLDQALRLIENMEVEK-------DEGIWCAFLGACRIHRQVDL 389

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
             +  + L  +   +   ++L  NIY  AG   +  K+R L+++  +KK PG + IEV+ 
Sbjct: 390 AEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDN 449

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSF 438
           ++  F AGDN H ++ EIY ++ S 
Sbjct: 450 IIYRFGAGDNSHLRSNEIYEMLKSL 474



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 136/298 (45%), Gaps = 28/298 (9%)

Query: 65  DP-FVVSSLLEFYSL-----VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           DP F +S+L +  ++     VH   T   +       D++    ++    K  D   A  
Sbjct: 2   DPDFFISTLFKCRNIFQIKQVHAQVTTTGII-----HDLIVANKLLYMCAKHKDLVTAHL 56

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF KM ER+ VSWS ++  + +  D++     FR++   G KP+   L  V+ AC     
Sbjct: 57  LFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMG 116

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +HS   +  L  +  + + +VDMY+KCG + +A  +F+ +  KD      MI+G
Sbjct: 117 LIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAG 176

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC------THAKMVRDGLNLFENMSA 292
            A  G   +S  LFD+M + G  P +   V ++  C        A++V D +      + 
Sbjct: 177 YAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYV-----CAR 231

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
            Y ++ +L     ++D+ A+ G ++ + +  +     +   +   W A++ A   +G+
Sbjct: 232 RYSLDVELG--TAMIDMYAKCGSIDSSREIFDR----MEQKNVISWSAMIGAYGYHGQ 283


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 251/437 (57%), Gaps = 33/437 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLD-MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR + Q    K     + + M      PN +TFP ++KAC  +  LE  G  VHA +VK
Sbjct: 197 LIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLE-LGGAVHASMVK 255

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF EDP V ++L+  Y    + G++  +                          +A+++
Sbjct: 256 FGFEEDPHVRNTLVHMYCCCCQDGSSGPV--------------------------SAKKV 289

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++ P +++V+WSA++  Y+R  +    ++LFR+MQ  G+ P+E  +VSVL+ACA LGA+
Sbjct: 290 FDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGAL 349

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+ SY +R ++ ++V L  A++DM++KCG V  A+ VF  +  +   +W +MI G+
Sbjct: 350 ELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGL 409

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G   +++ +FD M++ G  P +  F+ VL+ C+H+ +V  G   F  M  ++ + P+
Sbjct: 410 AMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPK 469

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VD+L+RAG V EA +F+          +  +W ++++AC   G++++G  V +
Sbjct: 470 IEHYGCMVDMLSRAGRVNEALEFVR---AMPVEPNQVIWRSIVTACHARGELKLGESVAK 526

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L     +  S +VL  NIY K   W+ +  KVR+++   GM+K PG ++IE+N  + EF
Sbjct: 527 ELIRREPSHESNYVLLSNIYAKLLRWE-KKTKVREMMDVKGMRKIPGSTMIEMNNEIYEF 585

Query: 419 LAGDNRHAQAGEIYRVI 435
           +AGD  H Q  EIY ++
Sbjct: 586 VAGDKSHDQYKEIYEMV 602



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 15/251 (5%)

Query: 124 PERNAVSWSAIMAAYSRISDFK-EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           P  +A  ++ ++ A+++ +  K   L  +  M+   + PN+     VL ACA +  +  G
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKC------GHVHSALSVFEGISNKDAGAWNAMI 236
             VH+   ++  E++  +   +V MY  C      G V SA  VF+    KD+  W+AMI
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPV-SAKKVFDESPVKDSVTWSAMI 305

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G A  G++ +++ LF  M  +G  P E T V+VL+ C     +  G    E+      +
Sbjct: 306 GGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG-KWLESYIERKNI 364

Query: 297 EPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
              +E    ++D+ A+ G V+ A K F E K+  +       W +++    ++G+     
Sbjct: 365 MRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVS-----WTSMIVGLAMHGRGLEAV 419

Query: 356 RVWRKLAEMGI 366
            V+ ++ E G+
Sbjct: 420 LVFDEMMEQGV 430


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 247/442 (55%), Gaps = 11/442 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q      ++  ++ M++ G EP+  T   +  AC  L  +   G+ +HA V+K 
Sbjct: 223 LITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIRE-GLQIHARVMKH 281

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             +  D  + ++L++ Y+   ++  AR +FD+ P RDVV+ T+MV GY K    + AR +
Sbjct: 282 DKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLM 341

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  M ERN VSW+A++A Y++  + +E + LF  ++   + P      ++L ACA+L  +
Sbjct: 342 FSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADL 401

Query: 180 TQGLWVHSYAKRYHL------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
             G   H++  ++        + ++ +  +++DMY KCG V     VFE +  +D  +WN
Sbjct: 402 KLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWN 461

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI G A NG   ++LE+F  M+ SG +P   T + VL+ C+HA +V +G   F++M+  
Sbjct: 462 AMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIE 521

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+ P  +HY C+VDLL RAG ++EA   I+         DA VWG+LL+AC+++G I +
Sbjct: 522 HGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMP---MEPDAVVWGSLLAACKVHGNITL 578

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G  V  +L E+   +   +VL  N+Y E G   +  +VRK + + G+ K+PGCS I +  
Sbjct: 579 GKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQS 638

Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
            +  F+  D RH    +IY ++
Sbjct: 639 HLHVFMVKDKRHPHKKDIYLIL 660



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 147/298 (49%), Gaps = 2/298 (0%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D+ F  ++  F  L+  CV    +      VHA ++K  F  + F+ + L++ Y     +
Sbjct: 13  DLSF-LDSSPFAKLLDTCVKSKSVFE-ARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFL 70

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             AR +FD    R+  +W  ++    K G  + A  LF+ MPER+  SW+A+++ +++  
Sbjct: 71  EDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRD 130

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            F+E L     M       NE    S L+ACA L  ++ G+ +H    +     +V + +
Sbjct: 131 RFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGS 190

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A+VDMYSKC  V SA   F+ +  ++  +WN++I+    NG A K+LE+F RM+  G +P
Sbjct: 191 ALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEP 250

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            E T  +V + C     +R+GL +   +         L     +VD+ A+   V EA 
Sbjct: 251 DEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEAR 308



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 140/308 (45%), Gaps = 64/308 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G+ Q +  + ++   +DM    F  N Y+F   + AC  L  L + G+ +H  + K 
Sbjct: 122 MVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDL-SIGVQIHGLIAKS 180

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            +  D ++ S+L++ YS    + +A+  FD    R++V+W +++  Y             
Sbjct: 181 RYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCY------------- 227

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
               E+N  +  A              L +F +M   G++P+E  L SV +ACA L AI 
Sbjct: 228 ----EQNGPAGKA--------------LEVFVRMMNCGIEPDEITLASVASACASLSAIR 269

Query: 181 QGLWVHSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKD----------- 228
           +GL +H+   ++   +N ++L  A+VDMY+KC  V+ A  VF+ +  +D           
Sbjct: 270 EGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGY 329

Query: 229 --------------------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                                 +WNA+I+G   NG+ ++++ LF  + +    PT  TF 
Sbjct: 330 AKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFG 389

Query: 269 AVLTTCTH 276
            +L  C +
Sbjct: 390 NLLNACAN 397


>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
          Length = 596

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 144/387 (37%), Positives = 230/387 (59%), Gaps = 6/387 (1%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H  VV  G      + +++++ YS   ++  AR LFD+   RD V+WT+M+ GY +   
Sbjct: 192 LHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASM 251

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            ++A ++F+ MP ++A++W+A+++ + +  + +  L LF +M   G+ P    LVS L A
Sbjct: 252 LDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGA 311

Query: 173 CAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           CA +G + +G  VH +  R  +     NV +  A++DMYSKCG + +A++VF+ +  +D 
Sbjct: 312 CAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDI 371

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +WN+M++G + NG  K+SL +F+RM+K   QPT  TF+AVLT C+HA +V DG  + E+
Sbjct: 372 ISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILES 431

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   +GVEP+ EHYA  +D L R   +EEA +FI+     +G G    WGALL AC ++G
Sbjct: 432 MQD-HGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHG 490

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSV 408
            IE+   V   L ++   +   +V+  NIY  AG WD +A +VR L+   G++K    S 
Sbjct: 491 NIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWD-DARQVRALMKGKGLRKDQAYSW 549

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           IEV      F+A D  H +A EIY ++
Sbjct: 550 IEVQRAKHMFVADDTSHHEANEIYEML 576



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 40/288 (13%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L++  +  G +   G  VHA +VK        + + L+  Y+L+     + A FD  P +
Sbjct: 34  LLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHK 93

Query: 96  DVVTWTTMVDGYGK-MGDFENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           +  ++ +++    +  G   +A  L + MP   RN VS++ ++++ +R     E L +F 
Sbjct: 94  NAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFA 153

Query: 153 QM-QEVGMKPNESGL-----VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           Q+ ++ G+   +  +     VS  +ACA L        +H       +E  VI+A A+VD
Sbjct: 154 QLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVD 213

Query: 207 MYSKCGHVH-------------------------------SALSVFEGISNKDAGAWNAM 235
            YSK G V                                 A+ VF+ +  +DA AW A+
Sbjct: 214 AYSKAGRVEDARGLFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTAL 273

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           ISG   NG+ + +LELF+RM   G  PT    V+ L  C    +V  G
Sbjct: 274 ISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 242/431 (56%), Gaps = 5/431 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++  Y +    + ++    +ML  G  P+  T    I A   L  L  +G   H +V++ 
Sbjct: 304 ILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDL-FYGKVCHGYVIRN 362

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      + + +++ Y    K   A  +FD   ++ VV+W ++  G+ + GD E+A E+F
Sbjct: 363 GLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVF 422

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++PERNAV W+ +++   + S F++ + LFR+MQ  G+K +   ++ + +AC +LGA  
Sbjct: 423 NQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPE 482

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
              WVH+Y ++  +  ++ L TA+VDM+++CG   SA+ VF  ++ +D  AW A I  +A
Sbjct: 483 LAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMA 542

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M G+ + +  LF++M+  G +P    FV VLT C+H   V  GL++F  M   +G+ PQ+
Sbjct: 543 MEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQI 601

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG++ EA   I  K   +   D  VWG+LL+ACR++  +E+      +
Sbjct: 602 EHYGCMVDLLGRAGLLREAFDLI--KSMPMEPNDV-VWGSLLAACRVHKNVEMATYAAER 658

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+       HVL  NIY  AG   +  +VR  + E G++K PG S ++VNGV+ EF +
Sbjct: 659 INELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTS 718

Query: 421 GDNRHAQAGEI 431
           GD  H +   I
Sbjct: 719 GDESHPEMTHI 729



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 154/304 (50%), Gaps = 43/304 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  A   + ++  Y+ ML +G  PN+YTFP ++  C  +      G+ VH  VVK 
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCE-GIQVHGSVVKM 160

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  ED F+ + L+ FY+                               + G  ++  ++F
Sbjct: 161 GLEEDVFIQNCLIHFYA-------------------------------ECGHMDHGHKVF 189

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M ERN VSW++++  Y+R    KE +SLF +M E G++P+   +V V++ACA L  + 
Sbjct: 190 EGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLD 249

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V +Y     L+ N ++  A+VDMY KCG + +A  +F+   +++   +N ++S  A
Sbjct: 250 MGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYA 309

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-----------CTHAKMVRDGLNLFEN 289
             G A+++L + D M++ G +P   T ++ ++              H  ++R+GL  +++
Sbjct: 310 RQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDS 369

Query: 290 MSAV 293
           +  V
Sbjct: 370 IGNV 373



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 122/243 (50%), Gaps = 15/243 (6%)

Query: 94  DRDVVTWTTMVDGYGKMGDFEN---ARELFEKMPERNAVS-----WSAIMAAYSRISDFK 145
           D+   T T +V+   ++   E+   AR+ FE   E           ++++  YS     +
Sbjct: 54  DQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGR 113

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E + L+ +M  +G+ PN      VL+ C  + A  +G+ VH    +  LE++V +   ++
Sbjct: 114 EAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLI 173

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
             Y++CGH+     VFEG+S ++  +W ++I G A     K+++ LF  MV++G +P+  
Sbjct: 174 HFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSV 233

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAV---YGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           T V V++ C     +RD L++ E + A     G++        +VD+  + G ++ A++ 
Sbjct: 234 TMVCVISACAK---LRD-LDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRL 289

Query: 323 IEE 325
            +E
Sbjct: 290 FDE 292


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/404 (34%), Positives = 235/404 (58%), Gaps = 12/404 (2%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFV----HAH 56
            +I GY Q N  K  +  +  M     + +  T   +I AC  LG        V    H H
Sbjct: 1012 LIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNH 1071

Query: 57   VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
            +       D ++ ++L+++Y  + ++ +A  +F +  D++ VT   M+  Y K G+  +A
Sbjct: 1072 I-----EVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSA 1126

Query: 117  RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            +++F+++P ++ +SWS+++ AYS+ S F + L LFRQMQ   +KP+   + SVL+ACAHL
Sbjct: 1127 KKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHL 1186

Query: 177  GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            GA+  G W+H Y +R +++ + I+  +++DM++KCG V  AL VF  +  KD  +WN++I
Sbjct: 1187 GALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSII 1246

Query: 237  SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
             G+A NG   ++L++F  M+  G +P E TF+ VL  C + ++V +GL+ FE M +V+ +
Sbjct: 1247 LGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNL 1306

Query: 297  EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            EPQ++HY CVVD+L+RAG +E+A  FI E        D  VW  LL ACR +G + V   
Sbjct: 1307 EPQMKHYGCVVDILSRAGQLEKAVSFISEMP---LAPDPVVWRILLGACRTHGNVAVAEM 1363

Query: 357  VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
              +KL+E+   + +  +L  NIY  A    +A  VR+  ++  +
Sbjct: 1364 ATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVRRWTADNAV 1407



 Score =  234 bits (596), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 125/402 (31%), Positives = 224/402 (55%), Gaps = 6/402 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           ++ Y    FP L               + + F  ++KAC  LG     G  +HA VV+ G
Sbjct: 452 LKAYSHGPFP-LEALHLFKHARQHLADDTFVFTFVLKACAGLG-WHRAGAQLHALVVQKG 509

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F    +V ++L+  Y +   +  AR +FD+ P ++VV+W  M+ G+   G+ E AR LF+
Sbjct: 510 FEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFD 569

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           +MP RN VSW+ ++  Y+R   + E L+L R M   G+ P+E  +++V+ A ++LG I  
Sbjct: 570 QMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILM 629

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF-EGISNKDAGAWNAMISGVA 240
           G  ++ Y ++  +  +  +  +++D+Y+K G V ++L VF E +  ++  +W ++ISG A
Sbjct: 630 GEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFA 689

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G + ++LELF  M ++G +P   TF++V+  C+H  +V  GL  F++M   Y ++P++
Sbjct: 690 MHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEI 749

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +H+ C++D+L RAG + EAE+ IE   G     +  VW  LL  C  YG++ +G R  + 
Sbjct: 750 KHFGCIIDMLGRAGRLCEAEQIIE---GLPMEVNVTVWRILLGCCSKYGEVAMGERAIKM 806

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402
           ++++         +  N+  E G   +A + RKL+ +  + K
Sbjct: 807 ISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVK 848



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 165/357 (46%), Gaps = 78/357 (21%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVK 59
            ++RG  Q++ PK ++  Y    + G +P+N TFP ++KAC     P E  G  +H HV+K
Sbjct: 911  LLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKE--GEQMHNHVIK 968

Query: 60   FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             GF  D FV +SL+  Y+    +  AR++F++   +DVV+W +++ G             
Sbjct: 969  LGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGG------------- 1015

Query: 120  FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                              YS+ +  KEVL+LF+ MQ   ++ ++  +V V++AC HLG  
Sbjct: 1016 ------------------YSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDW 1057

Query: 180  TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            +    +  Y +  H+E +V L   ++D Y + G + SA  VF  + +K+    NAMI+  
Sbjct: 1058 SMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAY 1117

Query: 240  AMNGD---AKK----------------------------SLELFDRMVKSGTQPTETTFV 268
            A  G+   AKK                            SLELF +M ++  +P      
Sbjct: 1118 AKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIA 1177

Query: 269  AVLTTCTH------AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +VL+ C H       K + D +    N+ A   +E  L      +D+ A+ G V+EA
Sbjct: 1178 SVLSACAHLGALDLGKWIHDYVRR-NNIKADTIMENSL------IDMFAKCGCVQEA 1227



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 141/328 (42%), Gaps = 41/328 (12%)

Query: 53   VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
            +HAH+V  G     + +S ++  Y+L                                 D
Sbjct: 860  LHAHLVVSGLHNCQYAMSKVIRLYAL------------------------------HQSD 889

Query: 113  FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              +A ++F+++       W+ ++   ++    K+ +  +++ QE GMKP+      VL A
Sbjct: 890  LVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKA 949

Query: 173  CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
            CA   A  +G  +H++  +     ++ ++ +++ +Y+ CG +  A SVF  +  KD  +W
Sbjct: 950  CAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSW 1009

Query: 233  NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA---KMVRDGLNLFEN 289
            N++I G + +   K+ L LF  M     Q  + T V V++ CTH     M    +   E+
Sbjct: 1010 NSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEH 1069

Query: 290  MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
                  +E  +     ++D   R G ++ AEK   +    +   +     A+++A    G
Sbjct: 1070 NH----IEVDVYLGNTLIDYYCRIGQLQSAEKVFSQ----MKDKNTVTLNAMITAYAKGG 1121

Query: 350  KIEVGNRVWRKLAEMGITDFSTHVLSYN 377
             +    +++ ++    +  +S+ + +Y+
Sbjct: 1122 NLVSAKKIFDQIPNKDLISWSSMICAYS 1149



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/291 (20%), Positives = 120/291 (41%), Gaps = 23/291 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+        ++  + +M   G +PN  TF  +I AC   G +E    F  + V ++
Sbjct: 684 IISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEY 743

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTWTTMV---DGYGKMGDFENA 116
               +      +++      ++  A  + +  P + +V  W  ++     YG++   E A
Sbjct: 744 NIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERA 803

Query: 117 RELFEKMPERNAVSW---SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
            ++   +   +   +   S ++    R SD ++   L  Q + V ++  E+ + +V    
Sbjct: 804 IKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKLQ--EAVMEAVKKLH 861

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS-KCGHVHSALSVFEGISNKDAGAW 232
           AHL  +  GL    YA            + V+ +Y+     + SA  VF+ I +     W
Sbjct: 862 AHL--VVSGLHNCQYA-----------MSKVIRLYALHQSDLVSAHKVFKQIESPTTFLW 908

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           N ++ G+A +   K ++  + +  + G +P   TF  VL  C      ++G
Sbjct: 909 NTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEG 959



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 17/240 (7%)

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             A ++F++ P      W A + AYS      E L LF+  ++  +  +      VL AC
Sbjct: 435 RTALKVFDQSP----APWRAFLKAYSHGPFPLEALHLFKHARQ-HLADDTFVFTFVLKAC 489

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A LG    G  +H+   +   E +  + TA++++Y     +  A  VF+ +  K+  +WN
Sbjct: 490 AGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWN 549

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            MI+G A  G+ + +  LFD+M          ++  ++   T A +  + L L  +M A 
Sbjct: 550 VMITGFAGWGEVEYARLLFDQMPCRNV----VSWTGLIDGYTRACLYAEALTLLRHMMA- 604

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKF--IEEKMGGLGGGDANVWGALLSACRIYGKI 351
            G+ P       V+  ++  G +   E      EK G +   DA V  +L+    +Y KI
Sbjct: 605 GGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIM--SDARVGNSLID---LYAKI 659


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 229/433 (52%), Gaps = 37/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+ +   + ++  +  +L+MG +P++++   ++ AC  LG   + G ++  ++   
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTS-GEWIDRYISDS 244

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G + FV +SLL                               D Y K G+ E A  +F
Sbjct: 245 GMGRNVFVATSLL-------------------------------DMYVKCGNLERANLIF 273

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPE++ VSWS ++  Y+     ++ L LF QMQ   +KP+   +V VL+ACA LGA+ 
Sbjct: 274 SAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALD 333

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W  S   R     N +L TA++DMYSKCG V  A  +F  +  KD   WNAM+ G++
Sbjct: 334 LGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLS 393

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           MNG AK    LF  + K G +P E TF+ +L  CTH   V +G   F NM  V+ + P +
Sbjct: 394 MNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSI 453

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG++ EA + I          +A VWGALL  C+++    +  +V +K
Sbjct: 454 EHYGCMVDLLGRAGLLNEAHQLINNMP---MKPNAVVWGALLGGCKLHKDTHLAEQVLKK 510

Query: 361 LAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +V   NIY     W+ EA K+R  + E  ++K   CS IE++G+V EFL
Sbjct: 511 LIELEPWNSGNYVQLSNIYSGNHRWE-EAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFL 569

Query: 420 AGDNRHAQAGEIY 432
            GD  H  + +IY
Sbjct: 570 VGDKSHWLSEKIY 582



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 144/274 (52%), Gaps = 32/274 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG +  +    ++  Y  M   GF PNN+T P ++KAC     +   G+ +H+ +VK 
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVR-LGLKIHSLLVKA 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D FV +SLL                                 Y K  +F++A ++F
Sbjct: 144 GYDHDVFVKTSLLSL-------------------------------YVKCDNFDDALKVF 172

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +P++N VSW+AI+  Y     F+E +  F+++ E+G+KP+   LV VL ACA LG  T
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+  Y     + +NV +AT+++DMY KCG++  A  +F  +  KD  +W+ MI G A
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
            NG  +++L+LF +M     +P   T V VL+ C
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 84/164 (51%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    ++ +F ++ E N   W+ ++        F + + L+  M+  G  PN   +  VL
Sbjct: 62  GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA    +  GL +HS   +   + +V + T+++ +Y KC +   AL VF+ I +K+  
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           +W A+I+G   +G  ++++  F ++++ G +P   + V VL  C
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAAC 225



 Score = 42.7 bits (99), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 9/184 (4%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H+   R HL+++  L   ++      G  + +  VF  +   +   WN MI G+     
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDC 94

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
              ++ L+  M   G  P   T   VL  C     VR GL +  ++    G +  +    
Sbjct: 95  FDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKI-HSLLVKAGYDHDVFVKT 153

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLA 362
            ++ L  +    ++A K  ++        D NV  W A+++     G        ++KL 
Sbjct: 154 SLLSLYVKCDNFDDALKVFDDI------PDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 363 EMGI 366
           EMG+
Sbjct: 208 EMGL 211


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 243/443 (54%), Gaps = 8/443 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY        +   +  M+    + + +TF  +I  C   G     G  +HA+ +K 
Sbjct: 260 MISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFR-LGKEMHAYFLKT 318

Query: 61  GFGEDPFVV----SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
                P V     ++L+ FY    K+  A+ +F+K P+RD+V+W  ++ GY  +   + A
Sbjct: 319 VANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEA 378

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           +  F +MPE+N +SW  +++  ++I   +E L  F +M+  G +P +      + +C+ L
Sbjct: 379 KSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVL 438

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G++  G  +H+   RY  E ++    A++ MY++CG V +A  +F  +   DA +WNAMI
Sbjct: 439 GSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMI 498

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           + +  +G   +++ELF+ M+K G  P   +F+ V++ C+HA +V++G   F++M  VYGV
Sbjct: 499 AALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGV 558

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  EHYA ++DLL RAG   EA++ +E      G   A +W ALL+ CRI+G I++G  
Sbjct: 559 NPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPG---APIWEALLAGCRIHGNIDLGIE 615

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              +L E+      T+VL  N+Y  AG   +  KVRKL+ + G+KK+PGCS IEV   V 
Sbjct: 616 AAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVH 675

Query: 417 EFLAGDNRHAQAGEIYRVIHSFL 439
            FL GD  H +  +IY  +   +
Sbjct: 676 SFLVGDANHPEVRQIYNYLEQLV 698



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 184/411 (44%), Gaps = 51/411 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y   +    ++  + DM    F P+NYTF  ++ A  ++   E     +H  VVK 
Sbjct: 118 MITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKS 177

Query: 61  GFGEDPFVVSSLLEFY---------SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           G G    V+++L+  Y              M  AR LFD+ P+RD ++WTT++ GY K  
Sbjct: 178 GTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNN 237

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D + A+E      ++  V+W+A+++ Y+    + E   +FR+M    ++ +E    SV++
Sbjct: 238 DLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVIS 297

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSALSVFEGISNK 227
            CA+ G    G  +H+Y  +        +A     A++  Y KCG V  A  +F  +  +
Sbjct: 298 VCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPER 357

Query: 228 DAGAWN-------------------------------AMISGVAMNGDAKKSLELFDRMV 256
           D  +WN                                MISG+A  G A+++L+ F+RM 
Sbjct: 358 DLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMK 417

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G +P +  F   + +C+    ++ G  L   +   YG E  L     ++ + AR G+V
Sbjct: 418 LQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQV-VRYGYESSLSAGNALITMYARCGVV 476

Query: 317 EEAE-KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           + A   FI      +   DA  W A+++A   +G+      ++ ++ + GI
Sbjct: 477 DAAHCLFI-----NMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGI 522



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 44/292 (15%)

Query: 36  LIKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           L++ C +  P+  +    VHAH++  GF     +++ L++ YS   K+  AR LFD+ P 
Sbjct: 17  LLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQ 76

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFR 152
            D+V  TT++  Y   GD + +R++F   P   R++V ++A++ AYS   D    + LF 
Sbjct: 77  PDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFC 136

Query: 153 QMQEVGMKPNESGLVSVLTACA------------HLGAITQGL---------WVHSYAKR 191
            MQ    +P+     SVL A A            H   +  G           + SY K 
Sbjct: 137 DMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKC 196

Query: 192 YHL--------------------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
                                   ++ +  T ++  Y K   + +A     G S K   A
Sbjct: 197 AASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVA 256

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           WNAMISG A  G   ++ E+F +M+ S  Q  E TF +V++ C +A   R G
Sbjct: 257 WNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLG 308


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 229/433 (52%), Gaps = 37/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+ +   + ++  +  +L+MG +P++++   ++ AC  LG   + G ++  ++   
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTS-GEWIDRYISDS 244

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G + FV +SLL                               D Y K G+ E A  +F
Sbjct: 245 GMGRNVFVATSLL-------------------------------DMYVKCGNLERANLIF 273

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPE++ VSWS ++  Y+     ++ L LF QMQ   +KP+   +V VL+ACA LGA+ 
Sbjct: 274 SAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALD 333

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+W  S   R     N +L TA++DMYSKCG V  A  +F  +  KD   WNAM+ G++
Sbjct: 334 LGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLS 393

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           MNG AK    LF  + K G +P E TF+ +L  CTH   V +G   F NM  V+ + P +
Sbjct: 394 MNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSI 453

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG++ EA + I          +A VWGALL  C+++    +  +V +K
Sbjct: 454 EHYGCMVDLLGRAGLLNEAHQLINNMP---MKPNAVVWGALLGGCKLHKDTHLAEQVLKK 510

Query: 361 LAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +V   NIY     W+ EA K+R  + E  ++K   CS IE++G+V EFL
Sbjct: 511 LIELEPWNSGNYVQLSNIYSGNHRWE-EAEKIRSTMKEQQIQKIRACSWIEIDGIVHEFL 569

Query: 420 AGDNRHAQAGEIY 432
            GD  H  + +IY
Sbjct: 570 VGDKSHWLSEKIY 582



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 144/274 (52%), Gaps = 32/274 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG +  +    ++  Y  M   GF PNN+T P ++KAC     +   G+ +H+ +VK 
Sbjct: 85  MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVR-LGLKIHSLLVKA 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D FV +SLL                                 Y K  +F++A ++F
Sbjct: 144 GYDHDVFVKTSLLSL-------------------------------YVKCDNFDDALKVF 172

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +P++N VSW+AI+  Y     F+E +  F+++ E+G+KP+   LV VL ACA LG  T
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+  Y     + +NV +AT+++DMY KCG++  A  +F  +  KD  +W+ MI G A
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
            NG  +++L+LF +M     +P   T V VL+ C
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 84/164 (51%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    ++ +F ++ E N   W+ ++        F + + L+  M+  G  PN   +  VL
Sbjct: 62  GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA    +  GL +HS   +   + +V + T+++ +Y KC +   AL VF+ I +K+  
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           +W A+I+G   +G  ++++  F ++++ G +P   + V VL  C
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAAC 225



 Score = 42.7 bits (99), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 9/184 (4%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H+   R HL+++  L   ++      G  + +  VF  +   +   WN MI G+     
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDC 94

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
              ++ L+  M   G  P   T   VL  C     VR GL +  ++    G +  +    
Sbjct: 95  FDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKI-HSLLVKAGYDHDVFVKT 153

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLA 362
            ++ L  +    ++A K  ++        D NV  W A+++     G        ++KL 
Sbjct: 154 SLLSLYVKCDNFDDALKVFDDI------PDKNVVSWTAIITGYISSGHFREAIGAFKKLL 207

Query: 363 EMGI 366
           EMG+
Sbjct: 208 EMGL 211


>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
 gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
          Length = 496

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/412 (36%), Positives = 233/412 (56%), Gaps = 9/412 (2%)

Query: 28  PNNYTFPPLIKACV--ILGPLEN-FGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           PN+ T   ++ AC      PL     + +HA  +K  F     + + L  FY        
Sbjct: 67  PNDVTLLTVLSACADSPSSPLARPLALTLHARALKL-FPSHLLLSTCLARFYLASRLPHL 125

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A  LFD  P R VVT+ TMV G  + G  + A E+F+ MP  + VSW+A++  + +    
Sbjct: 126 ALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRH 185

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E +  FR M    ++P+   L++V++ACA +GA+  G+WVH    R  LE+NV +A ++
Sbjct: 186 DEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSL 245

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY++CG V  A  VF  I  +   +WN+MI G+A NG   +++ELF+ M + G +P  
Sbjct: 246 IDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDA 305

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            T   VLT C+HA +   GL  ++ M+  YG+  ++EHY CVVDLL RAG ++EA   +E
Sbjct: 306 VTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVE 365

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +  V GALL+ CR++G +++  ++ + L E+     + +VL  NIY   G 
Sbjct: 366 TMP---MRPNEVVLGALLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGK 422

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           WD  A KVR L+   G+KK+PG S++E++G V EF++ D  H QA EI +++
Sbjct: 423 WD-GAGKVRSLMKARGVKKRPGHSIVEIDGDVHEFVSSDRSHPQAEEIGQML 473



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 34/257 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+++      ++ C+  ML    EP+  T   ++ AC  +G L   GM+VH  V++ 
Sbjct: 175 LIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGAL-GLGMWVHRLVLRQ 233

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  V +SL++ Y+   ++  A  +F     R VV+W +M+ G    G    A ELF
Sbjct: 234 GLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELF 293

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E                               +M+  G KP+   L  VLTAC+H G   
Sbjct: 294 E-------------------------------EMRRQGFKPDAVTLTGVLTACSHAGLTE 322

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
            GL  +      Y +   +     VVD+  + G +  A+ V E +  + +     A+++G
Sbjct: 323 HGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAG 382

Query: 239 VAMNGDAKKSLELFDRM 255
             M+GD   + +L   +
Sbjct: 383 CRMHGDLDMAEQLMQHL 399



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 104/236 (44%), Gaps = 14/236 (5%)

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKM------PERNAVSWSAIMAAY--SRISDFKE 146
           RDVV+WT+ +    + GD   A      M      P  N V+   +++A   S  S    
Sbjct: 30  RDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLAR 89

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            L+L    + + + P+   L+S   A  +L +    L +  +       ++V+    +V 
Sbjct: 90  PLALTLHARALKLFPSHL-LLSTCLARFYLASRLPHLALQLFDTMP--VRSVVTYNTMVS 146

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
              + G V +A  VF+G+   D  +W A+I G   NG   ++++ F  M+    +P   T
Sbjct: 147 GLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVT 206

Query: 267 FVAVLTTCTHAKMVRDGLNLF-ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            +AV++ C     +  GL ++   +    G+E  +     ++D+ AR G V+ A +
Sbjct: 207 LIAVVSACAEVGAL--GLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQ 260


>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Brachypodium distachyon]
          Length = 523

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/420 (35%), Positives = 236/420 (56%), Gaps = 7/420 (1%)

Query: 18  YLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           +L ML  G   PN + +P +++A   +G        +H+H  K GF     + +SLL+ Y
Sbjct: 100 FLRMLRRGRPAPNQFVYPLVLRAACAIGV--QLVRSIHSHACKSGFHAYDVIRTSLLDGY 157

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           S    M  AR LFD   +R+V++WT +V GY + G   +A  LF++MPER+  +W+A++ 
Sbjct: 158 SRYGMMLDARKLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWNAMIT 217

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
             ++   F E + +  +M + G + N + +  VL+AC HLG +  G  VH YA R  +  
Sbjct: 218 GCTQNGLFVEAVGICSRMVDEGFQLNGTTVSCVLSACGHLGMLKIGKVVHGYAWRSCVGF 277

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
              +   ++DMY KCG++  A  +F+  S++    WN++I+ +A++G +K ++ +FD M 
Sbjct: 278 GSSVVNGLIDMYGKCGNLKEARWMFDEFSDRSLTTWNSLINCLALHGHSKSAIAVFDEMR 337

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G +P   TFV +L  CTH   V +GL  F+ M     +EP++EHY C+VDLL RAG  
Sbjct: 338 DEGIEPDVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEPEIEHYGCIVDLLGRAGRF 397

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           E+A   I +        D  +WG+LL+ACR + ++E+     RKL ++   + +  V+  
Sbjct: 398 EDAMNVINDMK---VQPDEVIWGSLLNACRTHRQLELAEFSVRKLLQLNPNNANYVVMLA 454

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           N+Y E G   E  K+RKL+ E  M KK PGCS IEV+     F +GD+ H ++ +IY  +
Sbjct: 455 NLYSEGGSWEEVTKIRKLMKEDIMGKKLPGCSWIEVDRKTHRFYSGDDAHPESEDIYDTL 514



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 149/359 (41%), Gaps = 65/359 (18%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDF----KEVLSLFRQMQEVGMK-PNESGLVSVL 170
           AR LF+  P  N   +SA+++AY+  S       + L+LF +M   G   PN+     VL
Sbjct: 61  ARRLFDSTPHPNVFLYSAMLSAYAAASPAQAYGHDALALFLRMLRRGRPAPNQFVYPLVL 120

Query: 171 TACAHLGA-ITQGLWVHSYAKRYH-----------------------------LEKNVIL 200
            A   +G  + + +  H+    +H                              E+NVI 
Sbjct: 121 RAACAIGVQLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDARKLFDGLTERNVIS 180

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA+V  Y++ G +  A+ +F+ +  +D  AWNAMI+G   NG   +++ +  RMV  G 
Sbjct: 181 WTALVSGYARAGKIGDAIVLFDRMPERDVAAWNAMITGCTQNGLFVEAVGICSRMVDEGF 240

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----------VDLL 310
           Q   TT   VL+ C H  M++ G         V+G   +    +CV          +D+ 
Sbjct: 241 QLNGTTVSCVLSACGHLGMLKIG-------KVVHGYAWR----SCVGFGSSVVNGLIDMY 289

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDF 369
            + G ++EA    +E            W +L++   ++G  +    V+ ++ + GI  D 
Sbjct: 290 GKCGNLKEARWMFDE----FSDRSLTTWNSLINCLALHGHSKSAIAVFDEMRDEGIEPDV 345

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
            T V   N     G+  E     KL+ +  ++ +P    IE  G + + L    R   A
Sbjct: 346 VTFVGLLNACTHGGFVDEGLTYFKLMCDE-LRIEPE---IEHYGCIVDLLGRAGRFEDA 400


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 235/428 (54%), Gaps = 36/428 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ M++ G  P+ YTF  L+KAC      E  G   H   VK G  E  +V         
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEE-GRQAHGVAVKAGAAEHEYVAP------- 177

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                   T+++ Y + GD   AR +F++M     VS++A++ A
Sbjct: 178 ------------------------TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITA 213

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             R S   E L LFR+MQ  G+KP    L+SVL+ACA LGA+  G W+H Y ++  L+  
Sbjct: 214 SVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL 273

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + TA++DMY+KCG +  A+ VF+ + ++D  AW+ M+   A +G  ++++ +F+ M K
Sbjct: 274 VKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKK 333

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + TF+ VL  C+H+ MV +GL  F++M   YG+   ++HY CV DLLAR+G +E
Sbjct: 334 QGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLE 392

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
            A KFI+E         A +W  LLSAC  +G +++G RV+ ++ E+  +    +V+  N
Sbjct: 393 RAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +    G   E N VRKL+SE G+ K PGCS IE++ +V EF AGD  H  + E  R++  
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDE 509

Query: 438 FLKMSNLV 445
            ++   LV
Sbjct: 510 VIEQLKLV 517



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 116/234 (49%), Gaps = 10/234 (4%)

Query: 116 ARELFEKMPERNAVSW-SAIMAAYSRISDF----KEVLSLFRQMQEVGMKPNESGLVSVL 170
           AR++F+++P    V W + ++  Y+R        +E   +F +M E G+ P+    VS+L
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA   A  +G   H  A +    ++  +A  +++MY++CG V +A  +F+ +  +   
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           ++NAMI+    +    ++L LF  M   G +PT  T ++VL+ C     +  G  + + +
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYI 265

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             +  ++  ++    ++D+ A+ G +E+A    ++    +   D   W  ++ A
Sbjct: 266 RKMR-LDSLVKVNTALIDMYAKCGSLEDAIGVFQD----MESRDKQAWSVMMVA 314


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 171/485 (35%), Positives = 255/485 (52%), Gaps = 46/485 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVK 59
           MIRGY +A   +     +  M+  G E +  +F   +KAC   LG LE  G  VH  V K
Sbjct: 121 MIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLE--GKSVHCVVWK 178

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF     V + L+ FY L   +G AR +FD+  +RDVV+WT+M+DGY K    + A +L
Sbjct: 179 MGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKL 238

Query: 120 FEKM-----PERNAVSWSAIMAAYSRISDF---------------KEVLSLFRQMQEVGM 159
           F+ M      E N V+  A++++ S+  D                   L+L   + ++ +
Sbjct: 239 FDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYV 298

Query: 160 K-------------------PNESGLVSVLTACAHLGAITQGLWVH-SYAKRYHLEKNVI 199
           K                   P E+ L  VL  C  LG +  G W+H +Y +  + E +VI
Sbjct: 299 KCGCLDSAREIFDTMGAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVI 358

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           LA A++DMY+KCG +H A  VF  +  ++  +WN+MI+  A +G AK++L +F+RM+  G
Sbjct: 359 LANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGG 418

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P + T V VL+ C+H  +V +G   F+NM   YG+EP+ EHYAC++DLL R G++E+A
Sbjct: 419 FKPDDITLVGVLSACSHGGLVAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDA 478

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
            + I  KM       A  WGAL+ ACR++G +EV      +L E+   D   +VL  NI 
Sbjct: 479 YELI-TKMP--MEPSAAAWGALVHACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANIC 535

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
                  +    R+++ E  +KK PG S++EV G   EFLAGD  H Q+  IY  +    
Sbjct: 536 ASGRRWGDVKMARRMMRERRVKKIPGRSIVEVEGQFHEFLAGDESHPQSEGIYNALDQLF 595

Query: 440 KMSNL 444
            MS L
Sbjct: 596 AMSKL 600



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 145/340 (42%), Gaps = 15/340 (4%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +S+L+   +   M     +    P   V+ +  + D     GD  +A  LF ++   N  
Sbjct: 61  TSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDS----GDINHAHLLFSQLQNPNTY 116

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
            W+ ++  YS+    +     F QM + G++ +    V  L AC     + +G  VH   
Sbjct: 117 IWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVHCVV 176

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +      +++   +V  Y   G +  A  VF+ IS +D  +W +MI G + +    ++L
Sbjct: 177 WKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEISERDVVSWTSMIDGYSKHKWCDEAL 236

Query: 250 ELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           +LFD M+  G  +P E T +AVL++C+    +  G    E +     V   L     ++D
Sbjct: 237 KLFDSMLMYGVVEPNEVTMIAVLSSCSQKGDLILGKTFLEYVKT-RNVTRSLNLMNAILD 295

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +  + G ++ A + I + MG       N    +L  C   G ++VG  + R    M   +
Sbjct: 296 MYVKCGCLDSARE-IFDTMGAAFAPMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNE 354

Query: 369 FSTHVLS--YNIYKEAGWDMEANKV------RKLISETGM 400
            S  + +   ++Y + G   EA KV      R L+S   M
Sbjct: 355 ISVILANALIDMYAKCGVIHEAAKVFNDMPERNLVSWNSM 394


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/446 (34%), Positives = 246/446 (55%), Gaps = 28/446 (6%)

Query: 17  CYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           C L  +DM   P+  +   ++ AC  +G   + G  VH   V+ G  ED FV ++L++ Y
Sbjct: 2   CKLGDIDM--RPDVVSLVNVLPACASMGAWLH-GKAVHGIAVRSGSFEDLFVGNALVDMY 58

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN----AVSWS 132
           +    +  A  +FD+  ++DVV+W  MV+GY ++G FE+A  LFEKM E N     VSWS
Sbjct: 59  AKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWS 118

Query: 133 AIMAAYSRISDFKEVLSLFRQMQ----------------EVGM-KPNESGLVSVLTACAH 175
           A++AA+++     E L +FR+MQ                + G+ KPN   +   L ACA 
Sbjct: 119 AVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACAR 178

Query: 176 LGAITQGLWVHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           L A+  G  +H+Y  R H +   + +A  ++DMY+K G +  A  VF+ +  K+  +W +
Sbjct: 179 LAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTS 238

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +++G  M+G  K++LE+FD M + G QP   T + VL  C+H+ M+  G+  F +MS  +
Sbjct: 239 LMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEF 298

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           GV P  EHYAC+VDLL RAG + EA + IE   G      + VW ALLS CRI+  +E+G
Sbjct: 299 GVIPGQEHYACMVDLLGRAGRLNEAMELIE---GMQMEPSSIVWVALLSGCRIHANVELG 355

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
               ++L E+   +  ++ L  NIY  A    +  +VR L+  +G++K+PGCS ++    
Sbjct: 356 EHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKG 415

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLK 440
              F   D  H Q+ +IY ++ S  +
Sbjct: 416 TTTFYVADKTHPQSKQIYEILRSLTQ 441


>gi|147799976|emb|CAN68263.1| hypothetical protein VITISV_010806 [Vitis vinifera]
          Length = 445

 Score =  271 bits (694), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 141/346 (40%), Positives = 205/346 (59%), Gaps = 34/346 (9%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           SV  Y+ ML  G  P+N+TFP LIK+     P    G  +HAHVVKFG   D FVV++++
Sbjct: 95  SVTFYVCMLHAGHFPDNFTFPFLIKSSSA-SPTSLLGHQLHAHVVKFGLDRDVFVVNNMI 153

Query: 74  EFYSLVHKMGTARALFDKS--------------------------------PDRDVVTWT 101
             YS   ++ +AR +FD+S                                P ++ V+W 
Sbjct: 154 ALYSSFRELRSARKVFDESYSLVDVVSWTTLITGFSNSGQIDEARKIFDLMPLKNTVSWN 213

Query: 102 TMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMK 160
            M+ GY        AR+LF++MP+R+A SWSA+++ YS++    E L LF +M     M 
Sbjct: 214 AMISGYAGSSRINEARKLFDEMPDRDAASWSAMVSGYSQLGMCNEALDLFMEMVTGDKMI 273

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           PNE+ LVS ++ACA L A+ +G W+HSY K   L  NV L T ++DMY KCG +  A  V
Sbjct: 274 PNEAALVSAVSACAQLXALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGV 333

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F  +S ++  +WN+MI+G+A+NG  K++L LF +M   G  P   TF+A+LT C+H+ ++
Sbjct: 334 FNLMSERNVNSWNSMIAGLALNGCGKEALXLFWKMQFVGPSPNAITFIALLTGCSHSGLI 393

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
            +G  LF  M+ VYG++PQL+HY C+VDLL RAG+V+EA  F+EE 
Sbjct: 394 TEGRWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEEN 439


>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
 gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
          Length = 438

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 231/412 (56%), Gaps = 9/412 (2%)

Query: 28  PNNYTFPPLIKACV--ILGPL-ENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           PN+ T   ++ AC      PL     + VHA V+K  F     + + L+ FY        
Sbjct: 10  PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHL 68

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A  LFD  P R  VT+ T++ G  + G    A E+F+ MP  + VSW+A++    +    
Sbjct: 69  ALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRH 128

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E +  FR M   G++P+   L++V++ACA +GA+  G+WVH    R  LE+NV +A ++
Sbjct: 129 DEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSL 188

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY++CG V  A  VF G+  +   +WN+MI G A NG    ++E F+ M + G +P  
Sbjct: 189 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 248

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF  VLT C+H  +  +GL  ++ M A YG+  ++EHY CVVDLL R+G +EEA + + 
Sbjct: 249 VTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVT 308

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +  V GALL+ CR++G + +  ++ + L E+     + +VL  NIY   G 
Sbjct: 309 TMP---MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGK 365

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           WD  A KVR L+   G++K+PG S +E++G V EF++GD  H QA EI +++
Sbjct: 366 WD-GAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQML 416



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 34/259 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G ++      ++ C+  ML  G EP+  T   +I AC  +G L   GM+VH  VV+ 
Sbjct: 118 LIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGAL-GLGMWVHRLVVRQ 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  + +SL++ Y+   ++  AR +F     R VV+W +M+ G+   G   +A E F
Sbjct: 177 GLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHF 236

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E                                M+  G KP+      VLTAC+H G   
Sbjct: 237 EA-------------------------------MRREGFKPDAVTFTGVLTACSHGGLTD 265

Query: 181 QGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
           +GL  +   +  Y +   +     VVD+  + G +  A+ V   +  + +     A+++G
Sbjct: 266 EGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAG 325

Query: 239 VAMNGDAKKSLELFDRMVK 257
             M+GD   + +L   +++
Sbjct: 326 CRMHGDVGMAEQLMQHLLE 344


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 235/428 (54%), Gaps = 36/428 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ M++ G  P+ YTF  L+KAC      E  G   H   VK G  E  +V         
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEE-GRQAHGVAVKAGAAEHEYVAP------- 177

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                   T+++ Y + GD   AR +F++M     VS++A++ A
Sbjct: 178 ------------------------TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITA 213

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             R S   E L LFR+MQ  G+KP    L+SVL+ACA LGA+  G W+H Y ++  L+  
Sbjct: 214 SVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL 273

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + TA++DMY+KCG +  A+ VF+ + ++D  AW+ M+   A +G  ++++ +F+ M K
Sbjct: 274 VKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKK 333

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + TF+ VL  C+H+ MV +GL  F++M   YG+   ++HY CV DLLAR+G +E
Sbjct: 334 QGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLE 392

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
            A KFI+E         A +W  LLSAC  +G +++G RV+ ++ E+  +    +V+  N
Sbjct: 393 RAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +    G   E N VRKL+SE G+ K PGCS IE++ +V EF AGD  H  + E  R++  
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDE 509

Query: 438 FLKMSNLV 445
            ++   LV
Sbjct: 510 VIEQLKLV 517



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 116 ARELFEKMPERNAVSWSAIM-----AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           AR++F+++P    V W   +              +E   +F +M E G+ P+    VS+L
Sbjct: 86  ARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA   A  +G   H  A +    ++  +A  +++MY++CG V +A  +F+ +  +   
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           ++NAMI+    +    ++L LF  M   G +PT  T ++VL+ C     +  G  + + +
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYI 265

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             +  ++  ++    ++D+ A+ G +E+A    ++    +   D   W  ++ A
Sbjct: 266 RKMR-LDSLVKVNTALIDMYAKCGSLEDAIGVFQD----MESRDKQAWSVMMVA 314


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 153/431 (35%), Positives = 238/431 (55%), Gaps = 36/431 (8%)

Query: 15  VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLE 74
           V  ++ ML+ G  P+ YTF  L+KAC      E+ G   HA  VK G     +V      
Sbjct: 118 VRVFVRMLEEGVAPDTYTFVSLLKACAAARAGEH-GRQAHAVAVKLGAAGHDYV------ 170

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
                                      T+++ Y + GD   AR  F +      VS++A+
Sbjct: 171 -------------------------RPTLINMYAECGDARAARVTFGRADGDCVVSYNAM 205

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           +AA  R S   E L LFR+MQ  G+ P    ++SVL+ACA LGA+  G W+H Y ++  L
Sbjct: 206 IAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDYVRKLGL 265

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
              V ++TA+VDMY+KCG +  A++VF+G+ ++D  AW+ MI   A +G  ++++ LF+ 
Sbjct: 266 GSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEE 325

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           M K G +P + TF+ +L  C+H+ +V +GL  F++M   +G+ P ++HY CV DLLAR+G
Sbjct: 326 MKKQGMKPDDITFLGLLYACSHSGLVSEGLRYFDDMKD-HGIVPGIKHYGCVTDLLARSG 384

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
            +E A KFI+E           +W  LLSAC  +G +E+G RV+ ++ E+  +    +V+
Sbjct: 385 QLERAYKFIDELP---INPTPILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVI 441

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
             N+    G+  E N+VRKL+S+ G+ K PGCS IE++  V EF AGD RH ++ E  ++
Sbjct: 442 FSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKM 501

Query: 435 IHSFLKMSNLV 445
           +   +    LV
Sbjct: 502 VDEVIDQLKLV 512



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/258 (23%), Positives = 114/258 (44%), Gaps = 33/258 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI   ++++ P  ++  + +M   G  P   T   ++ AC +LG L+  G ++H +V K 
Sbjct: 205 MIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQ-LGRWLHDYVRKL 263

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G    V ++L++ Y+    +  A A+F     RD   W+ M+  Y   G         
Sbjct: 264 GLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHG--------- 314

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                            Y R     E +SLF +M++ GMKP++   + +L AC+H G ++
Sbjct: 315 -----------------YGR-----EAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVS 352

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGV 239
           +GL      K + +   +     V D+ ++ G +  A    + +  N     W  ++S  
Sbjct: 353 EGLRYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSAC 412

Query: 240 AMNGDAKKSLELFDRMVK 257
             +GD +    +F+R+++
Sbjct: 413 GGHGDVELGKRVFERILE 430



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 11/235 (4%)

Query: 116 ARELFEKMPE-RNAVSWSAIMAAYSRISDFKEV-----LSLFRQMQEVGMKPNESGLVSV 169
           AR++F+++ +  +AV ++ ++  Y+R S          + +F +M E G+ P+    VS+
Sbjct: 80  ARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLEEGVAPDTYTFVSL 139

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L ACA   A   G   H+ A +     +  +   +++MY++CG   +A   F        
Sbjct: 140 LKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRADGDCV 199

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            ++NAMI+    +    ++L LF  M   G  PT  T ++VL+ C     ++ G  L + 
Sbjct: 200 VSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLGALQLGRWLHDY 259

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
           +  + G+   ++    +VD+ A+ G +E+A    +    G+   D   W  ++ A
Sbjct: 260 VRKL-GLGSLVKVSTALVDMYAKCGSLEDAIAVFQ----GMESRDRQAWSVMIVA 309


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 253/464 (54%), Gaps = 40/464 (8%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            +I+G++  + P  S+  Y+ ML     P++YT+  L++A         FG  + AH+ KF
Sbjct: 849  LIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFAS---GFGESLQAHIWKF 905

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---------------- 104
            GFG    + ++L+ FYS   ++  AR +FD+ P+RD VTWTTMV                
Sbjct: 906  GFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLA 965

Query: 105  ---------------DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                           DGY ++G+ E A  LF +MP ++ +SW+ ++  YSR   ++E ++
Sbjct: 966  NQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIA 1025

Query: 150  LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
            +F +M E G+ P+E  + +V++ACAHLG +  G  VH Y  +     +V + +A+VDMYS
Sbjct: 1026 VFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYS 1085

Query: 210  KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            KCG +  AL VF  +  K+   WN++I G+A +G A+++L++F +M     +P   TFV+
Sbjct: 1086 KCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVS 1145

Query: 270  VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
            V T CTHA +V +G  ++ +M   Y +   +EHY C+V L ++AG++ EA + I    G 
Sbjct: 1146 VFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELI----GS 1201

Query: 330  LG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
            +    +A +WGALL  CRI+  +E+    + KL  +   +   + L  ++Y E     + 
Sbjct: 1202 MEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYAEQNRWRDV 1261

Query: 389  NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             ++R  + E G++K  PG S I ++     F A D  H+ + E+
Sbjct: 1262 AEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEV 1305


>gi|357118977|ref|XP_003561223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 604

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/331 (40%), Positives = 206/331 (62%), Gaps = 6/331 (1%)

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           M +ARA+FD  P+RDVV+W +M+DGY + GD   A  +F+ MP R+A SW+ ++A Y+R 
Sbjct: 233 MASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRSAASWNVVLALYARR 292

Query: 142 SDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAITQGLWVHSYAKRY--HLEKNV 198
            D++E L LF  M  VG+  PNE   VSVLTAC  LG + +G WVH   +     L  +V
Sbjct: 293 KDWRECLRLFDAMMAVGVSVPNEKTFVSVLTACGSLGDLERGKWVHGLVRERWDRLVPDV 352

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +L TA++ MY+KCG + +A  +F+ +S +   +WN+MI G  ++G ++K+LELF  M KS
Sbjct: 353 LLLTALLTMYAKCGAMETAREIFDSMSERSVPSWNSMIIGYGLHGQSEKALELFLEMEKS 412

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G +P ETTF+ VL++C H  +V +G   F+ M   YG EP+ EH+ C++DLL RAG++++
Sbjct: 413 GPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEPKAEHFGCMMDLLGRAGLLKD 472

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           +E  I+      G     +WG ++SA +     ++G  V +KL EM   +F  ++L  NI
Sbjct: 473 SENLIQNLQ---GKASPALWGIMMSASQTQNNYKLGEFVGKKLIEMKPAEFGPYLLLSNI 529

Query: 379 YKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
           Y   G   +  KVR+++ E G +K  G S+I
Sbjct: 530 YASEGRWGDVEKVREVMKENGAEKYVGLSLI 560



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 116/227 (51%), Gaps = 15/227 (6%)

Query: 53  VHAHVVKFG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           +HA  V+ G    D  + +SLL  Y  +    +AR L    P  D VTW T++    + G
Sbjct: 109 LHALAVRAGHLPADLRLANSLLSIYLSLGAASSARRLIADIPRPDTVTWNTLLRACLRSG 168

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
              +AR LF++MP R+ VS+++++++Y+ + D      LF +M E            V+T
Sbjct: 169 LLPSARRLFDQMPHRDLVSYNSMLSSYAAVGDMAGAGRLFDEMPE----------RDVVT 218

Query: 172 ACAHLGAITQGLWVHSYAKRYH---LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
               L    +G    + A+       E++V+   +++D Y++ G V  A ++F+G+  + 
Sbjct: 219 WNTMLAGYARGGADMASARAVFDAMPERDVVSWNSMLDGYAQAGDVVMAWAMFDGMPRRS 278

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTC 274
           A +WN +++  A   D ++ L LFD M+  G   P E TFV+VLT C
Sbjct: 279 AASWNVVLALYARRKDWRECLRLFDAMMAVGVSVPNEKTFVSVLTAC 325



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 36/223 (16%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKF--GFGEDPFVVSSLLEFYSLVHKMGTA 85
           PN  TF  ++ AC  LG LE  G +VH  V +       D  ++++LL  Y+    M TA
Sbjct: 313 PNEKTFVSVLTACGSLGDLER-GKWVHGLVRERWDRLVPDVLLLTALLTMYAKCGAMETA 371

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R +FD   +R V +W +M+ GYG  G  E A                             
Sbjct: 372 REIFDSMSERSVPSWNSMIIGYGLHGQSEKA----------------------------- 402

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEKNVILATAV 204
             L LF +M++ G +PNE+  + VL++CAH G + +G W      R Y  E        +
Sbjct: 403 --LELFLEMEKSGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYGFEPKAEHFGCM 460

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGA-WNAMISGVAMNGDAK 246
           +D+  + G +  + ++ + +  K + A W  M+S      + K
Sbjct: 461 MDLLGRAGLLKDSENLIQNLQGKASPALWGIMMSASQTQNNYK 503


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 243/437 (55%), Gaps = 39/437 (8%)

Query: 1   MIRGYMQANFP-KLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +IRG +    P K  +  + DM+  G+  PN +T   ++KAC I+  LE  G  +HA ++
Sbjct: 61  VIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEE-GKQIHAQIL 119

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF   P+V SSL+ FYS                               K  +   AR+
Sbjct: 120 RSGFSSSPYVQSSLVNFYS-------------------------------KCEEITIARK 148

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F+++ ERN V WSA+++ Y+R+    E L +FR+MQ VG++P+E  LV VL+ACA +GA
Sbjct: 149 VFDEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGA 208

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G WVH+Y K+  +  ++ L TA+++MY+KCG +  A  +F+ +  KD+ AW++MI G
Sbjct: 209 LDIGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVG 268

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A++G A+ +L +F RM ++  +P   TF+ +L+ C H  +V DG   + +M  + G+EP
Sbjct: 269 LAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLEL-GIEP 327

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C+VDLL R G+++EA  F       +   D  +W  LL A      ++    V 
Sbjct: 328 SMEHYGCMVDLLCRGGLIDEAYDF----ALIIPTPDPVIWRTLLVAYTKNRMLQKAEMVA 383

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            KL E+       +++  N+Y       + + VRK++ E G+K  PGC+ IEV+G V  F
Sbjct: 384 GKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNF 443

Query: 419 LAGDNRHAQAGEIYRVI 435
           + GD  H +A EI + +
Sbjct: 444 VTGDWSHPEAEEIKKTL 460


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  271 bits (693), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/428 (35%), Positives = 235/428 (54%), Gaps = 36/428 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ M++ G  P+ YTF  L+KAC      E  G   H   VK G  E  +V         
Sbjct: 126 FVRMMEEGVAPDTYTFVSLLKACASARAGEE-GRQAHGVAVKAGAAEHEYVAP------- 177

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                   T+++ Y + GD   AR +F++M     VS++A++ A
Sbjct: 178 ------------------------TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITA 213

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             R S   E L LFR+MQ  G+KP    L+SVL+ACA LGA+  G W+H Y ++  L+  
Sbjct: 214 SVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIRKMRLDSL 273

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + TA++DMY+KCG +  A+ VF+ + ++D  AW+ M+   A +G  ++++ +F+ M K
Sbjct: 274 VKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKK 333

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + TF+ VL  C+H+ MV +GL  F++M   YG+   ++HY CV DLLAR+G +E
Sbjct: 334 QGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLE 392

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
            A KFI+E         A +W  LLSAC  +G +++G RV+ ++ E+  +    +V+  N
Sbjct: 393 RAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSN 449

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +    G   E N VRKL+SE G+ K PGCS IE++ +V EF AGD  H  + E  R++  
Sbjct: 450 LCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDE 509

Query: 438 FLKMSNLV 445
            ++   LV
Sbjct: 510 VIEQLKLV 517



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 111/234 (47%), Gaps = 10/234 (4%)

Query: 116 ARELFEKMPERNAVSWSAIM-----AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           AR++F+++P    V W   +              +E   +F +M E G+ P+    VS+L
Sbjct: 86  ARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMMEEGVAPDTYTFVSLL 145

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA   A  +G   H  A +    ++  +A  +++MY++CG V +A  +F+ +  +   
Sbjct: 146 KACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVV 205

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           ++NAMI+    +    ++L LF  M   G +PT  T ++VL+ C     +  G  + + +
Sbjct: 206 SYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYI 265

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             +  ++  ++    ++D+ A+ G +E+A    ++    +   D   W  ++ A
Sbjct: 266 RKMR-LDSLVKVNTALIDMYAKCGSLEDAIGVFQD----MESRDKQAWSVMMVA 314


>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Brachypodium distachyon]
          Length = 489

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/415 (35%), Positives = 239/415 (57%), Gaps = 12/415 (2%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGTAR 86
           P++ TFP L +A   L       + +H+H ++ G    D  + +S +  Y+       AR
Sbjct: 58  PSHLTFPFLGRAAARLAS-PRLALSLHSHPLRLGLLPCDLHIANSFVHMYAACALPDLAR 116

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD+ P  + V+W  ++DGY K  D   ARE+F++MP R+ VSWSA++    +  +++E
Sbjct: 117 RLFDEIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYRE 176

Query: 147 VLSLFRQMQEV----GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            L+LF  M+      G++ N+  ++S+L ACAHLG + +G  +H Y +      N+ LAT
Sbjct: 177 ALALFEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLAT 236

Query: 203 AVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           ++VDMY+KCG +  AL VF    +++ D   WNAMI G+A++G   +++ELF  M  SG 
Sbjct: 237 SLVDMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGV 296

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P E T++ +L+ C H  +V +    F ++ A  G+ P +EHYAC+VD+L+RAG +EEA 
Sbjct: 297 VPDEITYLGLLSACVHGGLVDEAWRFFCSLEA-QGLRPHVEHYACLVDVLSRAGRLEEAY 355

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
             ++           +V GA+L+AC ++G +E+G  V R+L  +       ++   NIY 
Sbjct: 356 GVVKSMP---MEPSVSVLGAILNACHLHGWVELGEVVGRQLVRLQPDHDGRYIGLSNIYA 412

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            A    EA K RK++SE G+KK PG S I+V G    F+A D  H+ + +IY ++
Sbjct: 413 VAKRWQEAKKARKVMSERGLKKIPGFSEIDVGGRPCRFIAQDKTHSGSTDIYALL 467


>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
          Length = 493

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 232/412 (56%), Gaps = 9/412 (2%)

Query: 28  PNNYTFPPLIKACV--ILGPL-ENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           PN+ T   ++ AC      PL     + VHA V+K  F     + + L+ FY        
Sbjct: 65  PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHL 123

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A  LFD  P R  VT+ T++ G  + G    A E+F+ MP  + VSW+A++    +    
Sbjct: 124 ALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRH 183

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E ++ FR M   G++P+   L++V++ACA +GA+  G+WVH    R  LE+NV +A ++
Sbjct: 184 DEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSL 243

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY++CG V  A  VF G+  +   +WN+MI G A NG    ++E F+ M + G +P  
Sbjct: 244 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 303

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF  VLT C+H  +  +GL  ++ M A YG+  ++EHY CVVDLL R+G +EEA + + 
Sbjct: 304 VTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVT 363

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +  V GALL+ CR++G + +  ++ + L E+     + +VL  NIY   G 
Sbjct: 364 TMP---MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGK 420

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           WD  A KVR L+   G++K+PG S +E++G V EF++GD  H QA EI +++
Sbjct: 421 WD-GAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQML 471



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++ C+  ML  G EP+  T   +I AC  +G L   GM+VH  VV+ G   +  + +SL+
Sbjct: 186 AINCFRAMLLDGVEPDYVTLIAVISACAEVGAL-GLGMWVHRLVVRQGLERNVRIANSLI 244

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           + Y+   ++  AR +F     R VV+W +M+ G+   G   +A E FE            
Sbjct: 245 DMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEA----------- 293

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK-RY 192
                               M+  G KP+      VLTAC+H G   +GL  +   +  Y
Sbjct: 294 --------------------MRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEY 333

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLEL 251
            +   +     VVD+  + G +  A+ V   +  + +     A+++G  M+GD   + +L
Sbjct: 334 GIAARMEHYGCVVDLLGRSGRLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQL 393

Query: 252 FDRMVK 257
              +++
Sbjct: 394 MQHLLE 399


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 151/429 (35%), Positives = 245/429 (57%), Gaps = 38/429 (8%)

Query: 1   MIRGYMQAN-FPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I+GY Q +   K  +F +  + + G+  PN++T   ++KAC I+      G+ VH+HV+
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGE-GLQVHSHVL 119

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GFG   FV +SL+ FY                               GK  +   AR+
Sbjct: 120 KDGFGSSLFVQTSLVNFY-------------------------------GKCEEIGFARK 148

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +FE+MP RN V+W+A+++ ++R+    E + LFR+MQ+ G++P+   LVSV++ACA  GA
Sbjct: 149 VFEEMPVRNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGA 208

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G W+H+Y ++Y +  ++ L+TA+VDMY+KCG +  A  VF  +  KD  AW++MI G
Sbjct: 209 LDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMG 268

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A +G A+ +++ F +M+++   P   TF+AVL+ C H  +V  G   F ++   +G+EP
Sbjct: 269 FAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRG-RRFWSLMLEFGIEP 327

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C VDLL R+G+VEEA + I   M      +A  W +LL  C+    + +G  V 
Sbjct: 328 SVEHYGCKVDLLCRSGLVEEAYR-ITTTMK--IPPNAATWRSLLMGCKKKKLLNLGEIVA 384

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           R L E+   +   +++  N+Y       + +++RK++ E  +K  PGCS IEV+GVV EF
Sbjct: 385 RYLLELEPLNAENYIMISNLYSSLSQWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEF 444

Query: 419 LAGDNRHAQ 427
           + GD  H +
Sbjct: 445 VMGDQSHPE 453



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 138/295 (46%), Gaps = 34/295 (11%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDF-KEVLSLFRQMQEVGMK-PNESGLVS 168
           G+   AR +F ++P  N  SW++++  YS+I    KE + LF+++ E G   PN   L  
Sbjct: 38  GNINYARSVFAQIPHPNIFSWNSLIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAF 97

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL ACA + A  +GL VHS+  +     ++ + T++V+ Y KC  +  A  VFE +  ++
Sbjct: 98  VLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRN 157

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             AW AMISG A  G   +++ELF  M K+G QP   T V+V++ C  A  +  G  L  
Sbjct: 158 LVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHA 217

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWG-------- 339
            +   Y V   LE    +VD+ A+ G +E A++ F+   +       + + G        
Sbjct: 218 YIEK-YFVLTDLELSTALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQ 276

Query: 340 ----------------------ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
                                 A+LSAC   G +  G R W  + E GI     H
Sbjct: 277 DAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRGRRFWSLMLEFGIEPSVEH 331



 Score = 47.0 bits (110), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 40/250 (16%)

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           H   +T+ L + S+A  + L K V          S  G+++ A SVF  I + +  +WN+
Sbjct: 8   HAHILTRPLPLSSFA--FALSKIVAFCA-----LSPFGNINYARSVFAQIPHPNIFSWNS 60

Query: 235 MISGVA-MNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTC-----------THAKMVR 281
           +I G + ++  +K+ + LF ++ ++G   P   T   VL  C            H+ +++
Sbjct: 61  LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120

Query: 282 DGL--NLFENMSAV--YGVEPQ---------------LEHYACVVDLLARAGMVEEAEKF 322
           DG   +LF   S V  YG   +               L  +  ++   AR G V+EA + 
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE-MGITDFSTHVLSYNIYKE 381
             E        DA    +++SAC + G +++G  +   + +   +TD        ++Y +
Sbjct: 181 FREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAK 240

Query: 382 AGWDMEANKV 391
            G    A +V
Sbjct: 241 CGCIERAKQV 250


>gi|356524110|ref|XP_003530675.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 156/415 (37%), Positives = 235/415 (56%), Gaps = 43/415 (10%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+N+TFP ++KAC     L   G  VHAHV+K GF  D ++ +SL+ FY+          
Sbjct: 129 PDNHTFPIVLKACAYTFSLCE-GKQVHAHVLKHGFESDTYICNSLVHFYATC-------- 179

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
                                  G  + A ++F KM ERN VSW+ ++ +Y++   F   
Sbjct: 180 -----------------------GCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTA 216

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY---HLEKNVILATAV 204
           L +F +MQ V   P+   + SV++ACA LGA++ GLWVH+Y  +    ++  +V++ T +
Sbjct: 217 LRMFGEMQRVH-DPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNMVDDVLVNTCL 275

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPT 263
           VDMY K G +  A  VFE ++ +D  AWN+MI G+AM+G+AK +L  + RMVK     P 
Sbjct: 276 VDMYCKSGELEIAKQVFESMAFRDLNAWNSMILGLAMHGEAKAALNYYVRMVKVEKIVPN 335

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TFV VL+ C H  MV +G+  F+ M+  Y VEP+LEHY C+VDL ARAG + EA   +
Sbjct: 336 SITFVGVLSACNHRGMVDEGIVHFDMMTKEYNVEPRLEHYGCLVDLFARAGRINEALNLV 395

Query: 324 EEKMGGLGGGDANVWGALLSA-CRIYGKIEVGNRVWRKL--AEMGITDFSTHVLSYNIYK 380
            E        DA +W +LL A C+ Y  +E+   + +++  +E  +     +VL   +Y 
Sbjct: 396 SEMS---IKPDAVIWRSLLDACCKQYASVELSEEMAKQVFESEGSVCSSGVYVLLSKVYA 452

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            A    +   +RKL+SE G+ K+PGCS+IE++GVV EF AGD  H ++  IY+V+
Sbjct: 453 SACRWNDVGLLRKLMSEKGVTKEPGCSIIEIDGVVHEFFAGDTTHPKSENIYKVV 507



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 124/283 (43%), Gaps = 28/283 (9%)

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMG--DFENARELFEKMPERNAVSWSAIMAAYSRI 141
           T R +    P+  +  +T ++  Y  +   +   A  +F   P  N+  W+ ++  Y+R 
Sbjct: 45  TLRTVNSNHPNA-IFLYTNILQHYSSLTQPNLTYATRVFHHFPNPNSFMWNTLIRVYARS 103

Query: 142 SDFK------EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           ++        E+      M+E    P+      VL ACA+  ++ +G  VH++  ++  E
Sbjct: 104 TNTNHKHKAMELYKTMMTMEEKTAVPDNHTFPIVLKACAYTFSLCEGKQVHAHVLKHGFE 163

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +  +  ++V  Y+ CG +  A  +F  +S ++  +WN MI   A  G    +L +F  M
Sbjct: 164 SDTYICNSLVHFYATCGCLDLAEKMFYKMSERNEVSWNIMIDSYAKGGIFDTALRMFGEM 223

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGL--------NLFENMSAVYGVEPQLEHYACVV 307
            +    P   T  +V++ C     +  GL           +NM     V+  L +  C+V
Sbjct: 224 QRVH-DPDGYTMQSVISACAGLGALSLGLWVHAYILKKCDKNM-----VDDVLVN-TCLV 276

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           D+  ++G +E A++  E     +   D N W +++    ++G+
Sbjct: 277 DMYCKSGELEIAKQVFE----SMAFRDLNAWNSMILGLAMHGE 315



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 110/238 (46%), Gaps = 41/238 (17%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF---GFGEDPFVVSSLLEFYSLVHKMG 83
           +P+ YT   +I AC  LG L + G++VHA+++K       +D  V + L++ Y    ++ 
Sbjct: 228 DPDGYTMQSVISACAGLGAL-SLGLWVHAYILKKCDKNMVDDVLVNTCLVDMYCKSGELE 286

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
            A+ +F+    RD+  W +M+ G    G+ +                  A +  Y R+  
Sbjct: 287 IAKQVFESMAFRDLNAWNSMILGLAMHGEAK------------------AALNYYVRMVK 328

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH--SYAKRYHLEKNVILA 201
            ++++            PN    V VL+AC H G + +G+ VH     K Y++E  +   
Sbjct: 329 VEKIV------------PNSITFVGVLSACNHRGMVDEGI-VHFDMMTKEYNVEPRLEHY 375

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
             +VD++++ G ++ AL++   +S K DA  W +++           S+EL + M K 
Sbjct: 376 GCLVDLFARAGRINEALNLVSEMSIKPDAVIWRSLLDACC---KQYASVELSEEMAKQ 430


>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
          Length = 596

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/387 (36%), Positives = 230/387 (59%), Gaps = 6/387 (1%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H  VV  G      + +++++ YS   ++  AR +FD+   RD V+WT+M+ GY +   
Sbjct: 192 LHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASM 251

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            ++A ++F+ MP ++A++W+A+++ + +  + +  L LF +M   G+ P    LVS L A
Sbjct: 252 LDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGA 311

Query: 173 CAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           CA +G + +G  VH +  R  +     NV +  A++DMYSKCG + +A++VF+ +  +D 
Sbjct: 312 CAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDI 371

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +WN+M++G + NG  K+SL +F+RM+K   QPT  TF+AVLT C+HA +V DG  + E+
Sbjct: 372 ISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILES 431

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   +GVEP+ EHYA  +D L R   +EEA +FI+     +G G    WGALL AC ++G
Sbjct: 432 MQD-HGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHG 490

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSV 408
            IE+   V   L ++   +   +V+  NIY  AG WD +A +VR L+   G++K    S 
Sbjct: 491 NIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWD-DARQVRALMKGKGLRKDQAYSW 549

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           IEV      F+A D  H +A EIY ++
Sbjct: 550 IEVQRAKHMFVADDTSHHEANEIYEML 576



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 40/288 (13%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L++  +  G +   G  VHA +VK        + + L+  Y+L+     + A FD  P +
Sbjct: 34  LLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHK 93

Query: 96  DVVTWTTMVDGYGK-MGDFENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           +  ++ +++    +  G   +A  L + MP   RN VS++ ++++ +R     E L +F 
Sbjct: 94  NAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFA 153

Query: 153 QM-QEVGMKPNESGL-----VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           Q+ ++ G+   +  +     VS  +ACA L        +H       +E  VI+A A+VD
Sbjct: 154 QLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVD 213

Query: 207 MYSKCGHVHSALSVFEGIS-------------------------------NKDAGAWNAM 235
            YSK G V  A  VF+ ++                                +DA AW A+
Sbjct: 214 AYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTAL 273

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           ISG   NG+ + +LELF+RM   G  PT    V+ L  C    +V  G
Sbjct: 274 ISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321


>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 484

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 150/414 (36%), Positives = 228/414 (55%), Gaps = 13/414 (3%)

Query: 28  PNNYTFPPLIKACV------ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81
           PN+ T   ++ AC       +  PL    + +HA  VK  F  +  + + L  FY     
Sbjct: 66  PNDVTLLTVLSACAGDSSSALARPL---ALSLHALAVKL-FPCNLLLCTCLARFYLASRL 121

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
              A  LFD  PDR VVT+ TM+ G  + G    ARE+F++MP  + VSW+A++    + 
Sbjct: 122 PHLAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKN 181

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
               E +  F  M   G++P+   LV+ ++ACA +GA+  G+WVH +     LE NV +A
Sbjct: 182 GRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVA 241

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            +++DMY++CG V  A  VF  I  +   +WN+MI G A NG    ++E F+ M + G +
Sbjct: 242 NSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFK 301

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   TF  VLT C+HA +  +GL  ++ M   +G+  ++EHY CVVDLL RAG + EA +
Sbjct: 302 PDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMR 361

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            +E         +  V GALL+ CR++G +++  ++ + L E      S +VL  NIY  
Sbjct: 362 VVESMP---MRPNEVVLGALLAGCRMHGDVDLAEQLMQHLLEQDPGGDSNYVLLSNIYAA 418

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            G    A KVR L+   G+KK+PG S +E++G V EF+ GD  H QA E++ V+
Sbjct: 419 VGKWGGAGKVRSLMKSRGVKKRPGQSTVEIDGEVHEFVCGDRSHPQAREVFEVL 472



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 34/247 (13%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++ C+  ML  G EP+  T    I AC  +G L   GM+VH  VV      +  V +SL+
Sbjct: 187 AIDCFHSMLRDGVEPDYVTLVAAISACAEVGAL-GLGMWVHRFVVDKRLEHNVRVANSLI 245

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           + Y+   ++  AR +F +   R VV+W +M+ G+   G + +A E FE            
Sbjct: 246 DMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEA----------- 294

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
                               M+  G KP+      VLTAC+H G   +GL  +   +  H
Sbjct: 295 --------------------MRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEH 334

Query: 194 -LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLEL 251
            +   +     VVD+  + G +  A+ V E +  + +     A+++G  M+GD   + +L
Sbjct: 335 GIAARMEHYGCVVDLLGRAGRLGEAMRVVESMPMRPNEVVLGALLAGCRMHGDVDLAEQL 394

Query: 252 FDRMVKS 258
              +++ 
Sbjct: 395 MQHLLEQ 401



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 104/241 (43%), Gaps = 45/241 (18%)

Query: 121 EKMPERNAVSWSAIMAAYSRISDFK--EVLSLFRQMQEVGMKPNESGLVSVLTACAHLG- 177
            ++P R+ VSW++ +A  +R  D +                 PN+  L++VL+ACA    
Sbjct: 24  RRLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSS 83

Query: 178 ---AITQGLWVHSYA--------------KRYHL----------------EKNVILATAV 204
              A    L +H+ A               R++L                +++V+    +
Sbjct: 84  SALARPLALSLHALAVKLFPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNTM 143

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +    + G V +A  VF+ +   D  +W A+I G   NG   ++++ F  M++ G +P  
Sbjct: 144 ITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDY 203

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAE 320
            T VA ++ C     +  GL ++ +    + V+ +LEH   V    +D+ AR G V+ A 
Sbjct: 204 VTLVAAISACAEVGAL--GLGMWVHR---FVVDKRLEHNVRVANSLIDMYARCGQVDFAR 258

Query: 321 K 321
           +
Sbjct: 259 Q 259


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 246/443 (55%), Gaps = 41/443 (9%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           +G  +  F  L     LD L     P+  T   L+ AC  LG LE  G F+H++  + G 
Sbjct: 190 KGLSEKAFDLLDEMTKLDNL----RPDEVTMVSLVPACAQLGNLER-GKFLHSYSKELGL 244

Query: 63  GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
            E+  V +++L                               D Y K  D E+A+E+F +
Sbjct: 245 DENLRVNNAIL-------------------------------DMYCKCDDIESAQEVFNR 273

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           + E++ +SW+++++  ++   F+E L+LF++MQ   ++ +E  LV VL+ACA  GA+ QG
Sbjct: 274 IREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG 333

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            ++H    ++ +  +++L TA+VDMY+KCG +  AL VF  +  ++   WNA+I G+AM+
Sbjct: 334 KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMH 393

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G  + ++ LFD+M      P + TF+A+L  C+HA +V +GL +F+ M   + +EP++EH
Sbjct: 394 GHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEH 453

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y CVVDLL RA  V++A  FIE         ++ +W  LL ACR  G  ++  ++ R++ 
Sbjct: 454 YGCVVDLLCRARKVDDALAFIENMP---IKANSVLWATLLGACRSGGHFDLAEKIGRRVI 510

Query: 363 EMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
           E+       +V+  N+Y   + WD  A K+RK +   G++K PGCS IE+NG++ +F+AG
Sbjct: 511 ELEPDSCGRYVMLSNLYAGVSQWD-HALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAG 569

Query: 422 DNRHAQAGEIYRVIHSFLKMSNL 444
           D  H Q  +IY +I    +  NL
Sbjct: 570 DRSHLQTEQIYAMIEEMTRRVNL 592



 Score =  171 bits (433), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 176/349 (50%), Gaps = 36/349 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY ++  P  +V  Y  M++ G   +NYT+P ++ AC  LG ++  G   H  V+K 
Sbjct: 82  MIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVK-LGRRFHCEVLKN 140

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG D FV+++L++FY      G A  +FD+S  RDVVTW  M++ +   G  E A +L 
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLL 200

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M + +                               ++P+E  +VS++ ACA LG + 
Sbjct: 201 DEMTKLD------------------------------NLRPDEVTMVSLVPACAQLGNLE 230

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G ++HSY+K   L++N+ +  A++DMY KC  + SA  VF  I  KD  +W +M+SG+A
Sbjct: 231 RGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLA 290

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  +++L LF +M  +  +  E T V VL+ C     +  G      +   + +   L
Sbjct: 291 KSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQG-KYIHLLIDKFEINCDL 349

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
                +VD+ A+ G ++ A +        +   +   W AL+    ++G
Sbjct: 350 VLETALVDMYAKCGSIDLALQVFRR----MRVRNVFTWNALIGGLAMHG 394



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 6/234 (2%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD   AR+LF +M   +    + ++  Y+R  +  E +SL+  M E G+  +      VL
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA LGA+  G   H    +     ++ +  A++  Y  CG    A  VF+  + +D  
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            WN MI+     G ++K+ +L D M K    +P E T V+++  C     +  G     +
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG-KFLHS 237

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
            S   G++  L     ++D+  +   +E A    +E    +   D   W ++LS
Sbjct: 238 YSKELGLDENLRVNNAILDMYCKCDDIESA----QEVFNRIREKDVLSWTSMLS 287



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 102/244 (41%), Gaps = 33/244 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G  ++ + + ++  +  M     E +  T   ++ AC   G L+  G ++H  + KF
Sbjct: 285 MLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQ-GKYIHLLIDKF 343

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  + ++L++ Y+    +  A  +F +   R+V TW  ++ G    G  E+A    
Sbjct: 344 EINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDA---- 399

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      +SLF QM+   + P++   +++L AC+H G + 
Sbjct: 400 ---------------------------ISLFDQMEHDKLMPDDVTFIALLCACSHAGLVD 432

Query: 181 QGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           +GL +    K ++ +E  +     VVD+  +   V  AL+  E +  K      A + G 
Sbjct: 433 EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 492

Query: 240 AMNG 243
             +G
Sbjct: 493 CRSG 496



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 4/129 (3%)

Query: 159 MKPNE--SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY--SKCGHV 214
           +KP+   + L+SV     H  +I++    H+   R HL  N + ++ ++     S  G +
Sbjct: 2   IKPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDL 61

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           + A  +F  + N D    N MI G A + +  +++ L+  MV+ G      T+  VL  C
Sbjct: 62  NYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAAC 121

Query: 275 THAKMVRDG 283
                V+ G
Sbjct: 122 ARLGAVKLG 130


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 248/436 (56%), Gaps = 13/436 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +A  P  +V+C+  ML  G  P+       + AC  L  L+   +       K 
Sbjct: 208 LIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKR 267

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD-----KSPDRDVVTWTTMVDGYGKMGDFEN 115
               D  VV+ L++ Y+    +  A+A+FD     + P+     W  ++DGY K+G  + 
Sbjct: 268 IRMTDNLVVA-LIDMYAKCGDIAQAQAVFDAVGRGQKPE----PWNAIIDGYCKLGHVDV 322

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LF++M  R+ +++++++  Y      ++ L LF QM+  GM+ +   +VS+LTACA 
Sbjct: 323 ARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACAS 382

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           LGA+  G  +H+  ++  +E++V L TA++DMY KCG V  A +VF  +  +D   W AM
Sbjct: 383 LGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAM 442

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G+A NG  K +LE F +M + G QPT  T++AVLT C+H+ ++ +G   F  M +++ 
Sbjct: 443 IAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHK 502

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + PQ+EHY C++DLLAR+G+++EA   ++         +A +WG++LSACR++  I++  
Sbjct: 503 LHPQVEHYGCMIDLLARSGLLDEAMHLVQTMP---MQPNAVIWGSILSACRVHKNIDLAR 559

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
                L ++   + + +V  YNIY ++    +A +VR L+ E G+KK  G S I V G V
Sbjct: 560 HAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQV 619

Query: 416 EEFLAGDNRHAQAGEI 431
            +F+A D  H    EI
Sbjct: 620 HKFVANDQSHPWTLEI 635



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 9/228 (3%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           P V + L+  Y+ +     AR  FD+ P +D V W T++ G  + G  + AR L  + PE
Sbjct: 140 PLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPE 199

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           RN VSW++++A YSR     + +  F  M   G+ P+E  ++  L+AC+ L  +  G  +
Sbjct: 200 RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLL 259

Query: 186 HSYA--KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMN 242
           H     KR  +  N+++A  ++DMY+KCG +  A +VF+ +   +    WNA+I G    
Sbjct: 260 HLLVGQKRIRMTDNLVVA--LIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKL 317

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           G    +  LFD+M   G +    TF +++T   H+  +RD L LF  M
Sbjct: 318 GHVDVARSLFDQM---GARDV-ITFNSMITGYIHSGRLRDALQLFMQM 361


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  271 bits (692), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 244/442 (55%), Gaps = 11/442 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q      ++  ++ M+D G EP+  T   ++ AC     +   G+ +HA VVK 
Sbjct: 223 LITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIRE-GLQIHARVVKR 281

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             +  D  + ++L++ Y+   ++  AR +FD+ P R+VV+ T+MV GY +    + AR +
Sbjct: 282 DKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLM 341

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  M E+N VSW+A++A Y++  + +E + LF  ++   + P      ++L ACA+L  +
Sbjct: 342 FSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADL 401

Query: 180 TQGLWVHSYAKRYHL------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
             G   H+   ++        E ++ +  +++DMY KCG V     VFE +  +D  +WN
Sbjct: 402 KLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWN 461

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI G A NG    +LE+F +M+ SG +P   T + VL+ C+HA +V +G   F +M   
Sbjct: 462 AMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTE 521

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            G+ P  +H+ C+VDLL RAG ++EA   I+         D  VWG+LL+AC+++G IE+
Sbjct: 522 LGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMP---MQPDNVVWGSLLAACKVHGNIEL 578

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G  V  KL E+   +   +VL  N+Y E G   +  +VRK + + G+ K+PGCS IE+  
Sbjct: 579 GKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQS 638

Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
            V  F+  D RH    +I+ V+
Sbjct: 639 RVHVFMVKDKRHPLKKDIHLVL 660



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 140/268 (52%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA ++K  F  + F+ + L++ Y        AR +FD+ P R+  ++  ++    K G 
Sbjct: 41  IHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGK 100

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            + A  +F+ MPE +  SW+A+++ +++   F+E L  F  M       NE    S L+A
Sbjct: 101 LDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSA 160

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA L  +  G+ +H+   +     +V + +A+VDMYSKCG V  A   F+G++ ++  +W
Sbjct: 161 CAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSW 220

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N++I+    NG A K+LE+F  M+ +G +P E T  +V++ C     +R+GL +   +  
Sbjct: 221 NSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVK 280

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAE 320
                  L     +VD+ A+   V EA 
Sbjct: 281 RDKYRNDLVLGNALVDMYAKCRRVNEAR 308



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 195/467 (41%), Gaps = 114/467 (24%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G+ Q +  + ++  ++DM    F  N Y+F   + AC  L  L N G+ +HA + K 
Sbjct: 122 MVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDL-NMGIQIHALISKS 180

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            +  D ++ S+L++ YS    +  A+  FD    R++V+W +++  Y             
Sbjct: 181 RYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCY------------- 227

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
               E+N  +  A              L +F  M + G++P+E  L SV++ACA   AI 
Sbjct: 228 ----EQNGPAGKA--------------LEVFVMMMDNGVEPDEITLASVVSACASWSAIR 269

Query: 181 QGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE----------------- 222
           +GL +H+   KR     +++L  A+VDMY+KC  V+ A  VF+                 
Sbjct: 270 EGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGY 329

Query: 223 --------------GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                          +  K+  +WNA+I+G   NG+ ++++ LF  + +    PT  TF 
Sbjct: 330 ARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFG 389

Query: 269 AVLTTC-----------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            +L  C            H ++++ G   F++     G E  +     ++D+  + GMVE
Sbjct: 390 NLLNACANLADLKLGRQAHTQILKHGF-WFQS-----GEESDIFVGNSLIDMYMKCGMVE 443

Query: 318 EA----EKFIEEKM------------GGLGGGDANVWGAL---------------LSACR 346
           +     E+ +E  +             G G     ++  +               LSAC 
Sbjct: 444 DGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACS 503

Query: 347 IYGKIEVGNRVWRKL-AEMGITDFSTHVLS-YNIYKEAGWDMEANKV 391
             G +E G R +  +  E+G+     H     ++   AG   EAN +
Sbjct: 504 HAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDL 550



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 25/131 (19%), Positives = 58/131 (44%), Gaps = 4/131 (3%)

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           + S    +L +C    +      +H+   +      + +   +VD Y KCG+   A  VF
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           + +  ++  ++NA++S +   G   ++  +F    KS  +P + ++ A+++         
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVF----KSMPEPDQCSWNAMVSGFAQHDRFE 133

Query: 282 DGLNLFENMSA 292
           + L  F +M +
Sbjct: 134 EALRFFVDMHS 144


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 239/445 (53%), Gaps = 40/445 (8%)

Query: 1   MIRGYMQAN-----FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           MI G++Q       F   +++ + +M   G +P+ +TF  ++KAC  +   E  G  +HA
Sbjct: 216 MIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFE-CGKQIHA 274

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            + K+    D F+ ++L+E YSL                                G  E+
Sbjct: 275 QIFKYNLQSDEFIGNALVELYSLS-------------------------------GSIED 303

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
             + F   P+ + VSW++++  + +   F+  L+LF ++   G KP+E  +  +L+ACA+
Sbjct: 304 GLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 363

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L A+  G  +H+YA +  +    I+  + + MY+KCG + SA   F+   N D  +W+ M
Sbjct: 364 LAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVM 423

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           IS  A +G AK++++LF+ M  SG  P   TF+ VL  C+H  +V +GL  FE M   +G
Sbjct: 424 ISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHG 483

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P ++H AC+VDLL RAG + EAE FI   M     GD  +W +LLSACR++   + G 
Sbjct: 484 ITPNVKHSACIVDLLGRAGRLAEAESFI---MDSGFEGDPVMWRSLLSACRVHKATDTGK 540

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           RV  ++ E+     +++VL YNIY +AG  M A ++R L+ + G+KK+PG S IEV  VV
Sbjct: 541 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVV 600

Query: 416 EEFLAGDNRHAQAGEIYRVIHSFLK 440
             F+AGD  H  +  IY  +   L+
Sbjct: 601 HSFVAGDRSHPNSQVIYVQLEEMLE 625



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 162/358 (45%), Gaps = 48/358 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++       +   + ML  G   N+Y     +KAC       NF           
Sbjct: 113 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACG-----SNF----------- 156

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                    SS +E   ++H       L     D DVV  T ++D Y K+GD E+A ++F
Sbjct: 157 ---------SSSIECGKMLHGCAVKLGL-----DLDVVVGTALLDTYAKIGDLEDATKIF 202

Query: 121 EKMPERNAVSWSAIMAAYSRISDF-----KEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           + MP+ N V ++A++A + ++         E + LF +MQ  GMKP+E    S+L AC+ 
Sbjct: 203 KLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACST 262

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           + A   G  +H+   +Y+L+ +  +  A+V++YS  G +   L  F      D  +W ++
Sbjct: 263 IEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSL 322

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G   NG  +  L LF  ++ SG +P E T   +L+ C +   V+ G    E + A Y 
Sbjct: 323 IVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSG----EQIHA-YA 377

Query: 296 VEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           ++  + ++  +    + + A+ G ++ A    +E        D   W  ++S+   +G
Sbjct: 378 IKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET----KNPDIVSWSVMISSNAQHG 431



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 19/274 (6%)

Query: 59  KFGFGEDPFVVSSLLEFY--SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           KF F     V    L+     L+H + T   L    P   V+   +++D Y K G  + A
Sbjct: 41  KFTFSNALSVCGRTLDLRLGRLIHALITVSGL--GGP---VLLTNSLIDMYCKCGRIDWA 95

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH- 175
           R +FE   E ++VSW++++A Y RI    E+L L  +M   G+  N   L S L AC   
Sbjct: 96  RLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSN 155

Query: 176 -LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
              +I  G  +H  A +  L+ +V++ TA++D Y+K G +  A  +F+ + + +   +NA
Sbjct: 156 FSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNA 215

Query: 235 MISG-----VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
           MI+G        +  A +++ LF  M   G +P+E TF ++L  C+  +    G  +   
Sbjct: 216 MIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIH-- 273

Query: 290 MSAVYGVEPQLEHYA--CVVDLLARAGMVEEAEK 321
            + ++    Q + +    +V+L + +G +E+  K
Sbjct: 274 -AQIFKYNLQSDEFIGNALVELYSLSGSIEDGLK 306



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 101/204 (49%), Gaps = 3/204 (1%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP+RN VSW+++++ Y+++  + EV++LF++ +   ++ ++    + L+ C     +  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             +H+      L   V+L  +++DMY KCG +  A  VFE     D+ +WN++I+G    
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTC--THAKMVRDGLNLFENMSAVYGVEPQL 300
           G   + L L  +M++ G         + L  C    +  +  G  +    +   G++  +
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECG-KMLHGCAVKLGLDLDV 179

Query: 301 EHYACVVDLLARAGMVEEAEKFIE 324
                ++D  A+ G +E+A K  +
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFK 203


>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
 gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
          Length = 596

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 143/387 (36%), Positives = 230/387 (59%), Gaps = 6/387 (1%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H  VV  G      + +++++ YS   ++  AR +FD+   RD V+WT+M+ GY +   
Sbjct: 192 LHGAVVVSGMEVTVIMANAMVDAYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASM 251

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            ++A ++F+ MP ++A++W+A+++ + +  + +  L LF +M   G+ P    LVS L A
Sbjct: 252 LDDAVQVFDMMPAQDAIAWTALISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGA 311

Query: 173 CAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           CA +G + +G  VH +  R  +     NV +  A++DMYSKCG + +A++VF+ +  +D 
Sbjct: 312 CAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLERDI 371

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
            +WN+M++G + NG  K+SL +F+RM+K   QPT  TF+AVLT C+HA +V DG  + E+
Sbjct: 372 ISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACSHAGLVSDGRRILES 431

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           M   +GVEP+ EHYA  +D L R   +EEA +FI+     +G G    WGALL AC ++G
Sbjct: 432 MQD-HGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTTGSWGALLGACHVHG 490

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSV 408
            IE+   V   L ++   +   +V+  NIY  AG WD +A +VR L+   G++K    S 
Sbjct: 491 NIEIAEEVAEALFQLEPENSGRYVMLSNIYSAAGQWD-DARQVRALMKGKGLRKDQAYSW 549

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           IEV      F+A D  H +A EIY ++
Sbjct: 550 IEVQRAKHMFVADDTSHHEANEIYEML 576



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 127/288 (44%), Gaps = 40/288 (13%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L++  +  G +   G  VHA +VK        + + L+  Y+L+     + A FD  P +
Sbjct: 34  LLERAISAGDVRRLGAAVHALLVKTALTHHTLLSNRLVALYALLPTPAASLAAFDDLPHK 93

Query: 96  DVVTWTTMVDGYGK-MGDFENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           +  ++ +++    +  G   +A  L + MP   RN VS++ ++++ +R     E L +F 
Sbjct: 94  NAHSYNSLLAALARGRGTLPDALRLLDGMPPASRNVVSYNTVISSLARHGRESEALRVFA 153

Query: 153 QM-QEVGMKPNESGL-----VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           Q+ ++ G+   +  +     VS  +ACA L        +H       +E  VI+A A+VD
Sbjct: 154 QLARDRGLGQQQVAIDRFTVVSAASACAGLRDARHLRELHGAVVVSGMEVTVIMANAMVD 213

Query: 207 MYSKCGHVHSALSVFEGIS-------------------------------NKDAGAWNAM 235
            YSK G V  A  VF+ ++                                +DA AW A+
Sbjct: 214 AYSKAGRVEDARGVFDQMTIRDSVSWTSMIAGYCRASMLDDAVQVFDMMPAQDAIAWTAL 273

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           ISG   NG+ + +LELF+RM   G  PT    V+ L  C    +V  G
Sbjct: 274 ISGHEQNGEEEIALELFERMTGEGVVPTPFALVSCLGACAKVGLVARG 321


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/443 (35%), Positives = 239/443 (53%), Gaps = 41/443 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+++     ++  +  +L+MG  P+++T   ++ AC  +G L + G ++  ++ + 
Sbjct: 174 IICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLAS-GRWIDGYMRES 232

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + FV +SL                               VD Y K G  E AR +F
Sbjct: 233 GSVGNVFVATSL-------------------------------VDMYAKCGSMEEARRVF 261

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E++ V WSA++  Y+     KE L +F +MQ   ++P+   +V V +AC+ LGA+ 
Sbjct: 262 DGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALE 321

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W            N +L TA++D Y+KCG V  A  VF+G+  KD   +NA+ISG+A
Sbjct: 322 LGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLA 381

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M G    +  +F +MVK G QP   TFV +L  CTHA +V DG   F  MS+V+ V P +
Sbjct: 382 MCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTI 441

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVW 358
           EHY C+VDL ARAG++ EA+  I          +AN  VWGALL  CR++   ++   V 
Sbjct: 442 EHYGCMVDLQARAGLLVEAQDLIRSM-----PMEANSIVWGALLGGCRLHKDTQLAEHVL 496

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           ++L E+   +   +VL  NIY  +  WD EA K+R  +++ GM+K PGCS +EV+GVV E
Sbjct: 497 KQLIELEPWNSGHYVLLSNIYSASHRWD-EAEKIRSSLNQKGMQKLPGCSWVEVDGVVHE 555

Query: 418 FLAGDNRHAQAGEIYRVIHSFLK 440
           FL GD  H  + +IY  + S  K
Sbjct: 556 FLVGDTSHPLSHKIYEKLESLFK 578



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 185/375 (49%), Gaps = 54/375 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRG +  +  + +V  Y  M   GF P+N+TFP ++KAC  L    + G+ +H+ V+K 
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV + L+  YS                               K G   +AR++F
Sbjct: 132 GFDWDVFVKTGLVCLYS-------------------------------KNGFLTDARKVF 160

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++PE+N VSW+AI+  Y     F E L LFR + E+G++P+   LV +L AC+ +G + 
Sbjct: 161 DEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLA 220

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+  Y +      NV +AT++VDMY+KCG +  A  VF+G+  KD   W+A+I G A
Sbjct: 221 SGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYA 280

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH---------AKMVRDGLNLFENMS 291
            NG  K++L++F  M +   +P     V V + C+          A+ + DG     N  
Sbjct: 281 SNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSN-- 338

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
            V G          ++D  A+ G V +A    +E   G+   D  V+ A++S   + G +
Sbjct: 339 PVLGTA--------LIDFYAKCGSVAQA----KEVFKGMRRKDCVVFNAVISGLAMCGHV 386

Query: 352 EVGNRVWRKLAEMGI 366
                V+ ++ ++G+
Sbjct: 387 GAAFGVFGQMVKVGM 401


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 246/438 (56%), Gaps = 38/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++    + ++  + +M+     P+  T   ++ AC   G +E  G  +H  V   
Sbjct: 186 MITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIE-LGREIHTLVDDH 244

Query: 61  -GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GFG    +V++ +  YS                               K GD E A  L
Sbjct: 245 HGFGSSLKIVNAFIGLYS-------------------------------KCGDVEIASGL 273

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE +  ++ VSW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++SVL ACAHLGAI
Sbjct: 274 FEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAI 333

Query: 180 TQGLWVHSYA-KRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
             G W+H Y  KR   +     L T+++DMY+KCG + +A  VF  + +K   +WNAMI 
Sbjct: 334 DIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIF 393

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G AM+G A  + +LF RM K+G +P + T V +L+ C+H+ ++  G ++F++++  Y + 
Sbjct: 394 GFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNIT 453

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+LEHY C++DLL  AG+ +EAE+ I   M  +   D  +W +LL AC+++G +E+    
Sbjct: 454 PKLEHYGCMIDLLGHAGLFKEAEEIIH--MMPM-EPDGVIWCSLLKACKMHGNLELAESF 510

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            +KL E+   +  ++VL  NIY  AG   +  ++R++++  GMKK PGCS IE++ VV E
Sbjct: 511 AQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHE 570

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F+ GD  H Q+ EIYR++
Sbjct: 571 FIIGDKLHPQSREIYRML 588



 Score =  201 bits (510), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 196/369 (53%), Gaps = 9/369 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+RG   ++     +  Y+ M+  G  PN YTFP L+K+C      E  G  +HA V+K 
Sbjct: 54  MLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEE-GRQIHAQVMKL 112

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +  +SL+  Y+   ++  AR +FD S  RDVV+ T ++ GY   GD  +AR++F
Sbjct: 113 GCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVF 172

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + + ER+ VSW+A++  Y     ++E L LF++M    ++P+E  LVSVL+ACA  G+I 
Sbjct: 173 DXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIE 232

Query: 181 QGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            G  +H+    +H    ++ +  A + +YSKCG V  A  +FEG+S KD  +WN +I G 
Sbjct: 233 LGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGY 292

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVE 297
                 K++L LF  M++SG  P + T ++VL  C H   +  G  ++++ +   + GV 
Sbjct: 293 THMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYID-KRLKGVT 351

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
                   ++D+ A+ G +E A +     M        + W A++    ++G+      +
Sbjct: 352 NGSALRTSLIDMYAKCGDIEAAHQVFNSMM----HKSLSSWNAMIFGFAMHGRANAAFDL 407

Query: 358 WRKLAEMGI 366
           + ++ + GI
Sbjct: 408 FSRMRKNGI 416



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 140/297 (47%), Gaps = 15/297 (5%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSL---VHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
            HA +VK G     + +S LLE   +      +  A ++F+   + +++ W TM+ G   
Sbjct: 1   THAQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 110 MGDFENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
             D  +  E++ +M       NA ++  ++ + ++   F+E   +  Q+ ++G + +   
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
             S+++  A  G +     V   +     +++V+  TA++  Y+  G V SA  VF+ I+
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSS----QRDVVSCTALITGYASRGDVRSARKVFDXIT 176

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
            +D  +WNAMI+G   N   +++LELF  M+++  +P E T V+VL+ C  +  +  G  
Sbjct: 177 ERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGRE 236

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           +   +   +G    L+     + L ++ G VE A    E    GL   D   W  L+
Sbjct: 237 IHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFE----GLSCKDVVSWNTLI 289


>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 527

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 149/412 (36%), Positives = 231/412 (56%), Gaps = 9/412 (2%)

Query: 28  PNNYTFPPLIKACV--ILGPL-ENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           PN+ T   ++ AC      PL     + VHA V+K  F     + + L+ FY        
Sbjct: 99  PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHL 157

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A  LFD  P R  VT+ T++ G  + G    A E+F+ MP  + VSW+A++    +    
Sbjct: 158 ALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRH 217

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E +  FR M   G++P+   L++V++ACA +GA+  G+WVH    R  LE+NV +A ++
Sbjct: 218 DEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSL 277

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY++CG V  A  VF G+  +   +WN+MI G A NG    ++E F+ M + G +P  
Sbjct: 278 IDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDA 337

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF  VLT C+H  +  +GL  ++ M A YG+  ++EHY CVVDLL R+G +EEA + + 
Sbjct: 338 VTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVVT 397

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +  V GALL+ CR++G + +  ++ + L E+     + +VL  NIY   G 
Sbjct: 398 TMP---MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGK 454

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           WD  A KVR L+   G++K+PG S +E++G V EF++GD  H QA EI +++
Sbjct: 455 WD-GAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQML 505



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++ C+  ML  G EP+  T   +I AC  +G L   GM+VH  VV+ G   +  + +SL+
Sbjct: 220 AIDCFRAMLLDGVEPDYVTLIAVISACAEVGAL-GLGMWVHRLVVRQGLERNVRIANSLI 278

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           + Y+   ++  AR +F     R VV+W +M+ G+   G   +A E FE            
Sbjct: 279 DMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEA----------- 327

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK-RY 192
                               M+  G KP+      VLTAC+H G   +GL  +   +  Y
Sbjct: 328 --------------------MRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEY 367

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLEL 251
            +   +     VVD+  + G +  A+ V   +  + +     A+++G  M+GD   + +L
Sbjct: 368 GIAARMEHYGCVVDLLGRSGQLEEAMRVVTTMPMRPNEVVLGALLAGCRMHGDVGMAEQL 427

Query: 252 FDRMVK 257
              +++
Sbjct: 428 MQHLLE 433


>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
          Length = 505

 Score =  270 bits (691), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 135/361 (37%), Positives = 214/361 (59%), Gaps = 3/361 (0%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D  V SSL++ Y     +  AR++FD+   RDVV W  M+ GY K GD  +ARELF+ MP
Sbjct: 112 DAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAMP 171

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           ERN VSW+ ++  Y+++   ++ + +FR+MQ  G++ +   L+SVL AC  LGA+  G W
Sbjct: 172 ERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAVDLGEW 231

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH +  R  L + + L  +++DMY KCG +  A+ VFEG+  K    W  +I+G A++G 
Sbjct: 232 VHRFVVRRGLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGL 291

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
             +++E+F RM +    P   TF+A+L+ C+H  +   G   F  M + Y ++P++EHY 
Sbjct: 292 GLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPRVEHYG 351

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C+VDLL RAG ++EA+  ++         +A +WGALL+A R +G   +G +    L E+
Sbjct: 352 CMVDLLGRAGCLKEAQDLVKNMP---LKANAAIWGALLAAARTHGDAGLGEQALLHLIEL 408

Query: 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNR 424
              +   ++L  NI+ E     + +K+RK + E G++  PG S IEV+G+V EF + D  
Sbjct: 409 EPNNSGNYILLSNIFAEQERWGDVSKLRKAMRERGLRNVPGASSIEVDGMVHEFTSRDWS 468

Query: 425 H 425
           H
Sbjct: 469 H 469



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 110/247 (44%), Gaps = 34/247 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q   P+ +V  +  M   G E +      ++ AC  LG + + G +VH  VV+ 
Sbjct: 181 VIGGYAQMKRPEKAVEVFRRMQVEGIEADGVALLSVLAACGDLGAV-DLGEWVHRFVVRR 239

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  ++  +++S+++ Y     +  A  +F+   ++ VVTWTT++ G+   G    A E+F
Sbjct: 240 GLCQEIPLMNSIIDMYMKCGCIEKAVEVFEGMEEKSVVTWTTLIAGFALHGLGLQAVEMF 299

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M   N                               M PN    +++L+AC+H+G   
Sbjct: 300 CRMEREN-------------------------------MAPNAVTFLAILSACSHVGLTD 328

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
            G W  +    +Y ++  V     +VD+  + G +  A  + + +  K +A  W A+++ 
Sbjct: 329 LGRWYFNIMVSQYRIKPRVEHYGCMVDLLGRAGCLKEAQDLVKNMPLKANAAIWGALLAA 388

Query: 239 VAMNGDA 245
              +GDA
Sbjct: 389 ARTHGDA 395


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  270 bits (691), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 239/445 (53%), Gaps = 40/445 (8%)

Query: 1   MIRGYMQAN-----FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHA 55
           MI G++Q       F   +++ + +M   G +P+ +TF  ++KAC  +   E  G  +HA
Sbjct: 295 MIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFE-CGKQIHA 353

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            + K+    D F+ ++L+E YSL                                G  E+
Sbjct: 354 QIFKYNLQSDEFIGNALVELYSLS-------------------------------GSIED 382

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
             + F   P+ + VSW++++  + +   F+  L+LF ++   G KP+E  +  +L+ACA+
Sbjct: 383 GLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACAN 442

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L A+  G  +H+YA +  +    I+  + + MY+KCG + SA   F+   N D  +W+ M
Sbjct: 443 LAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVM 502

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           IS  A +G AK++++LF+ M  SG  P   TF+ VL  C+H  +V +GL  FE M   +G
Sbjct: 503 ISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHG 562

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P ++H AC+VDLL RAG + EAE FI   M     GD  +W +LLSACR++   + G 
Sbjct: 563 ITPNVKHSACIVDLLGRAGRLAEAESFI---MDSGFEGDPVMWRSLLSACRVHKATDTGK 619

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
           RV  ++ E+     +++VL YNIY +AG  M A ++R L+ + G+KK+PG S IEV  VV
Sbjct: 620 RVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVV 679

Query: 416 EEFLAGDNRHAQAGEIYRVIHSFLK 440
             F+AGD  H  +  IY  +   L+
Sbjct: 680 HSFVAGDRSHPNSQVIYVQLEEMLE 704



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 105/409 (25%), Positives = 173/409 (42%), Gaps = 68/409 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++       +   + ML  G   N+Y     +KAC       NF           
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACG-----SNF----------- 235

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                    SS +E   ++H       L     D DVV  T ++D Y K+GD E+A ++F
Sbjct: 236 ---------SSSIECGKMLHGCAVKLGL-----DLDVVVGTALLDTYAKIGDLEDATKIF 281

Query: 121 EKMPERNAVSWSAIMAAYSRISDF-----KEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           + MP+ N V ++A++A + ++         E + LF +MQ  GMKP+E    S+L AC+ 
Sbjct: 282 KLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACST 341

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           + A   G  +H+   +Y+L+ +  +  A+V++YS  G +   L  F      D  +W ++
Sbjct: 342 IEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSL 401

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGL 284
           I G   NG  +  L LF  ++ SG +P E T   +L+ C            HA  ++ G+
Sbjct: 402 IVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGI 461

Query: 285 NLFE-------------------NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
             F                    NM+      P +  ++ ++   A+ G  +EA    E 
Sbjct: 462 GNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFEL 521

Query: 326 KMG-GLGGGDANVWGALLSACRIYGKIEVGNRVWRKL-AEMGITDFSTH 372
             G G+        G L+ AC   G +E G R +  +  + GIT    H
Sbjct: 522 MKGSGIAPNHITFLGVLV-ACSHGGLVEEGLRYFEIMKKDHGITPNVKH 569



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 139/303 (45%), Gaps = 35/303 (11%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           +G   ++ T+  L++     G L + G   H H++K  F    F++++LL  Y       
Sbjct: 13  LGLPLDSVTYTKLVQCSTRTGSLIH-GKLAHMHMIKTCFKPCLFLLNNLLYMYC------ 65

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
                                    K G+ + A++LF++MP+RN VSW+++++ Y+++  
Sbjct: 66  -------------------------KCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGF 100

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           + EV++LF++ +   ++ ++    + L+ C     +  G  +H+      L   V+L  +
Sbjct: 101 YHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNS 160

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY KCG +  A  VFE     D+ +WN++I+G    G   + L L  +M++ G    
Sbjct: 161 LIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLN 220

Query: 264 ETTFVAVLTTC--THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
                + L  C    +  +  G  +    +   G++  +     ++D  A+ G +E+A K
Sbjct: 221 SYALGSALKACGSNFSSSIECG-KMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK 279

Query: 322 FIE 324
             +
Sbjct: 280 IFK 282


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 219/347 (63%), Gaps = 3/347 (0%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D ++ ++L++ Y     +  AR +FD+   R++V+W  M+ GYGK G+   ARELF+ M 
Sbjct: 212 DVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMS 271

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           +R+ +SW+ ++ +YS+   F E L LF++M E  +KP+E  + SVL+ACAH G++  G  
Sbjct: 272 QRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEA 331

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
            H Y ++Y ++ ++ +  A++DMY KCG V  AL VF+ +  KD+ +W ++ISG+A+NG 
Sbjct: 332 AHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGF 391

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           A  +L+ F RM++   QP+   FV +L  C HA +V  GL  FE+M  VYG++P+++HY 
Sbjct: 392 ADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYG 451

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           CVVDLL+R+G ++ A +FI+E        D  +W  LLSA +++G I +     +KL E+
Sbjct: 452 CVVDLLSRSGNLQRAFEFIKEMP---VTPDVVIWRILLSASQVHGNIPLAEIATKKLLEL 508

Query: 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
             ++   +VLS N Y  +    +A K+R+L+ ++ ++K  G S IE+
Sbjct: 509 DPSNSGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEM 555



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 169/380 (44%), Gaps = 68/380 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG+  ++ P  ++  Y  M   G   NN T+  L KAC  + P  + G  +HA V+K 
Sbjct: 48  MIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARV-PDVSCGSTIHARVLKL 106

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    +V ++L+  Y     +G A+ +FD+ P+RD+V+W ++V GYG+           
Sbjct: 107 GFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQ----------- 155

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                  F+EVL +F  M+  G+K +   +V V+ AC  LG   
Sbjct: 156 --------------------CKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWG 195

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
               +  Y +  ++E +V L   ++DMY + G VH A  VF+ +  ++  +WNAMI G  
Sbjct: 196 VADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYG 255

Query: 241 MNGDAKKSLELFD-------------------------------RMVKSGTQPTETTFVA 269
             G+   + ELFD                                M++S  +P E T  +
Sbjct: 256 KAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVAS 315

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VL+ C H   +  G    + +   Y V+  +     ++D+  + G+VE+A +  +E    
Sbjct: 316 VLSACAHTGSLDVGEAAHDYIQK-YDVKADIYVGNALIDMYCKCGVVEKALEVFKE---- 370

Query: 330 LGGGDANVWGALLSACRIYG 349
           +   D+  W +++S   + G
Sbjct: 371 MRKKDSVSWTSIISGLAVNG 390



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 60/290 (20%), Positives = 131/290 (45%), Gaps = 16/290 (5%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  LF+++       W+ ++  +S      E + ++  M   G+  N    + +  ACA 
Sbjct: 30  AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACAR 89

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           +  ++ G  +H+   +   E ++ ++ A+++MY  CGH+  A  VF+ +  +D  +WN++
Sbjct: 90  VPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSL 149

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM--VRDGLNLF--ENMS 291
           + G       ++ L +F+ M  +G +    T V V+  CT      V D +  +  EN  
Sbjct: 150 VCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEEN-- 207

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
               VE  +     ++D+  R G+V  A    ++    +   +   W A++      G +
Sbjct: 208 ---NVEIDVYLGNTLIDMYGRRGLVHLARGVFDQ----MQWRNLVSWNAMIMGYGKAGNL 260

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
                ++  +++  +  ++  + SY+   +AG   EA ++ K + E+ +K
Sbjct: 261 VAARELFDAMSQRDVISWTNMITSYS---QAGQFTEALRLFKEMMESKVK 307


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 165/445 (37%), Positives = 243/445 (54%), Gaps = 44/445 (9%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IRG  Q++ P  +V  Y  M     +P+N+TFP ++KAC  L  + N G  VH  V++ G
Sbjct: 79  IRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWV-NTGSAVHGRVLRLG 137

Query: 62  FGEDPFVVSSLLEF-------------------------------YSLVHKMGTARALFD 90
           FG +  V ++LL F                               Y+    +  AR LFD
Sbjct: 138 FGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197

Query: 91  KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL 150
           + P RD+V+W  M+  Y K G+ E+AR LF++ P ++ VSW+A++  Y   +  +E L L
Sbjct: 198 EMPKRDLVSWNVMITVYTKHGEMESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALEL 257

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDM 207
           F +M  VG  P+E  ++S+L+ACA LG +  G  VH  AK   + K   + +L  A+VDM
Sbjct: 258 FDEMCGVGECPDEVTMLSLLSACADLGDLESGEKVH--AKIIEMNKGKLSTLLGNALVDM 315

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG++  A+ VF  I +KD  +WN++ISG+A +G A++SL LF  M  +   P E TF
Sbjct: 316 YAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTF 375

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-K 326
           V VL  C+HA  V +G   F  M   Y +EP + H  CVVD+L RAG+++EA  FI   K
Sbjct: 376 VGVLAACSHAGNVDEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMK 435

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WD 385
           +      +A VW +LL AC+++G +E+  R   +L  M       +VL  N+Y   G WD
Sbjct: 436 I----EPNAIVWRSLLGACKVHGDVELAKRANEQLLRMRGDQSGDYVLLSNVYASQGEWD 491

Query: 386 MEANKVRKLISETGMKKKPGCSVIE 410
             A  VRKL+ + G+ K  G S +E
Sbjct: 492 -GAENVRKLMDDNGVTKNRGSSFVE 515



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 9/256 (3%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ++F ++P+ +   W+  +   S+  D    ++L+ QM +  +KP+      VL AC  
Sbjct: 60  ALQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTK 119

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L  +  G  VH    R     NV++   ++  ++KCG +  A  +F+     D  AW+A+
Sbjct: 120 LFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDSDKGDVVAWSAL 179

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A  GD   + +LFD M K        ++  ++T  T    +     LF+       
Sbjct: 180 IAGYAQRGDLSVARKLFDEMPKRDL----VSWNVMITVYTKHGEMESARRLFDEAPM--- 232

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
               +  +  ++       +  EA +  +E  G     D     +LLSAC   G +E G 
Sbjct: 233 --KDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLESGE 290

Query: 356 RVWRKLAEMGITDFST 371
           +V  K+ EM     ST
Sbjct: 291 KVHAKIIEMNKGKLST 306



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 118/261 (45%), Gaps = 38/261 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+  N  + ++  + +M  +G  P+  T   L+ AC  LG LE+ G  VHA +++ 
Sbjct: 241 LIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSACADLGDLES-GEKVHAKIIEM 299

Query: 61  GFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             G+    + ++L++ Y+    +G A  +F    D+DVV+W +++ G    G  E     
Sbjct: 300 NKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVSWNSVISGLAFHGHAE----- 354

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                     E L LFR+M+   + P+E   V VL AC+H G +
Sbjct: 355 --------------------------ESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNV 388

Query: 180 TQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G  + H    +Y +E  +     VVDM  + G +  A +    +    +A  W +++ 
Sbjct: 389 DEGNRYFHLMKNKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLG 448

Query: 238 GVAMNGD---AKKSLELFDRM 255
              ++GD   AK++ E   RM
Sbjct: 449 ACKVHGDVELAKRANEQLLRM 469



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 25/242 (10%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV--VDMYSKCGHVHSALSVFEGIS 225
           S +T    L  I   + V+         + ++L TA+  V   +    +  AL +F  I 
Sbjct: 9   STITNVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIP 68

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
             D   WN  I G + + D   ++ L+ +M +   +P   TF  VL  CT    V  G  
Sbjct: 69  QPDTFMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTG-- 126

Query: 286 LFENMSAVYGVEPQLEHYACVV---DLL---ARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
                SAV+G   +L   + VV    LL   A+ G ++ A    ++       GD   W 
Sbjct: 127 -----SAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIFDDS----DKGDVVAWS 177

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399
           AL++     G + V  +++ ++ +  +  ++  +  Y  + E    ME+   R+L  E  
Sbjct: 178 ALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGE----MES--ARRLFDEAP 231

Query: 400 MK 401
           MK
Sbjct: 232 MK 233


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  270 bits (690), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 245/469 (52%), Gaps = 41/469 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y+  +    ++  + +M   G +P++YT+P ++KA      L   GM +HA VV+ 
Sbjct: 108 MIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLW-VGMQIHAAVVRV 166

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
           G   + FV + L+  Y     +  A  + D+ P RDVV+W ++V G  + G F++A    
Sbjct: 167 GLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVC 226

Query: 117 ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
                                            +E+F K+  ++ VSW+ ++A Y   S 
Sbjct: 227 KEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSM 286

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             E + +F QM++  + P+   + SVL AC  L A+  G  +H Y  R  L+ N++L  A
Sbjct: 287 PAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENA 346

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++DMY+KCG +  A  VF+ +  +D  +W +MIS   MNG  + ++ LF RM   G  P 
Sbjct: 347 LIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPD 406

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
              FV+VL+ C+HA ++ +G   F+ M+    + P++EH+ C+VDLL RAG V+EA  FI
Sbjct: 407 SIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFI 466

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           ++        +  VWGALLSACR+Y  + +G     +L ++       +VL  NIY +AG
Sbjct: 467 KQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAG 523

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              +   VR ++   G+KK PG S  E++  V  FLAGD  H Q+ +IY
Sbjct: 524 RWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 572



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 89/175 (50%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++  Y   G+  + R +F+++P++N V ++ ++ +Y     + + L +F+ M   G+ P+
Sbjct: 77  LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 136

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
                 VL A +    +  G+ +H+   R  L+ NV +   ++ MY KCG +  A  V +
Sbjct: 137 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 196

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
            +  +D  +WN++++G A NG    +LE+   M   G +P   T  ++L   T+ 
Sbjct: 197 QMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT 251



 Score = 45.1 bits (105), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 40/254 (15%)

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           +AI   Y      K++ +L   +Q    KP  +    VLT     G I        Y K+
Sbjct: 2   TAINPLYRHFPAVKQLQTLVLSIQ----KPKFTQQNVVLTE-NLCGQILDKNPDIKYLKK 56

Query: 192 YH--------LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            H        L  N  L   ++  Y+ CG   S   +F+ I  K+   +N MI     N 
Sbjct: 57  LHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNH 116

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSA 292
               +L +F  M   G  P   T+  VL   +           HA +VR GL+L  N+  
Sbjct: 117 LYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL--NVFV 174

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             G          ++ +  + G + EA + +++    +   D   W +L++ C   G+ +
Sbjct: 175 GNG----------LISMYGKCGCLVEACRVLDQ----MPCRDVVSWNSLVAGCARNGQFD 220

Query: 353 VGNRVWRKLAEMGI 366
               V +++  +G+
Sbjct: 221 DALEVCKEMELLGL 234


>gi|224116552|ref|XP_002331925.1| predicted protein [Populus trichocarpa]
 gi|222874597|gb|EEF11728.1| predicted protein [Populus trichocarpa]
          Length = 530

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 148/436 (33%), Positives = 247/436 (56%), Gaps = 5/436 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y+    P  +   +  +++ G  P++++    + AC     L N G  VH  + +F
Sbjct: 73  LINLYLSTQLPIKAFSVFSKLVNEGLRPDSHSVVGALSACGKKQDLLN-GKLVHGMIFRF 131

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G +  V ++L++ Y    ++  A+ +F +   +DV +WT++++G+      E+AR +F
Sbjct: 132 QLGANSIVGNALIDMYCRNGEIKIAQLVFKQMGIKDVSSWTSLLNGFVMCNGLESARRVF 191

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
           ++MP RN V+W+A++  Y R       L +FRQM+  G  +P     V+VL+ CA LGA 
Sbjct: 192 DEMPWRNDVAWTAMITGYVRGGMPIRGLEMFRQMKAEGENQPTVITAVAVLSGCADLGAH 251

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VH Y  + +L+K V ++ A++DMYSK G V SA+ +F+ +  KD  +W  MIS  
Sbjct: 252 DHGQAVHGYISKVNLDKGVTVSNALMDMYSKGGCVESAMKIFDRLVKKDVFSWTTMISAH 311

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           + +G    +LE+F  M++SG  P + TF+ VL+ C+H+ ++ +   LF  M   YG EP+
Sbjct: 312 SSHGKGNHALEVFYDMLESGVIPNDVTFLLVLSGCSHSGLLVEANKLFNGMIQCYGFEPK 371

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL RAG++EEA++ I+         DA +W +LLSAC     + +     +
Sbjct: 372 IEHYGCMVDLLCRAGLLEEAKELIDNMP---MDPDAVIWRSLLSACMNQRNLGLAEIAGK 428

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           K+ E+   D   +VL  NIY  A    +A K+RK++ +  + KKP CS IE+NGVV +F 
Sbjct: 429 KIIELEPHDDGVYVLLSNIYHVANRMKDARKMRKMMGDQKVMKKPACSYIELNGVVHQFH 488

Query: 420 AGDNRHAQAGEIYRVI 435
             +  H  + +IY ++
Sbjct: 489 TENATHHASTKIYMLL 504



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 143/322 (44%), Gaps = 38/322 (11%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +V+ Y K+G+  +A+++F  + + + V++++++  Y       +  S+F ++   G++P+
Sbjct: 42  LVNRYAKLGNPRDAQKVFGYIQDPDRVTYTSLINLYLSTQLPIKAFSVFSKLVNEGLRPD 101

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
              +V  L+AC     +  G  VH    R+ L  N I+  A++DMY + G +  A  VF+
Sbjct: 102 SHSVVGALSACGKKQDLLNGKLVHGMIFRFQLGANSIVGNALIDMYCRNGEIKIAQLVFK 161

Query: 223 GISNKDAG-------------------------------AWNAMISGVAMNGDAKKSLEL 251
            +  KD                                 AW AMI+G    G   + LE+
Sbjct: 162 QMGIKDVSSWTSLLNGFVMCNGLESARRVFDEMPWRNDVAWTAMITGYVRGGMPIRGLEM 221

Query: 252 FDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           F +M   G  QPT  T VAVL+ C        G  +   +S V  ++  +     ++D+ 
Sbjct: 222 FRQMKAEGENQPTVITAVAVLSGCADLGAHDHGQAVHGYISKV-NLDKGVTVSNALMDMY 280

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG-ITDF 369
           ++ G VE A K  +     L   D   W  ++SA   +GK      V+  + E G I + 
Sbjct: 281 SKGGCVESAMKIFDR----LVKKDVFSWTTMISAHSSHGKGNHALEVFYDMLESGVIPND 336

Query: 370 STHVLSYNIYKEAGWDMEANKV 391
            T +L  +    +G  +EANK+
Sbjct: 337 VTFLLVLSGCSHSGLLVEANKL 358


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/439 (35%), Positives = 237/439 (53%), Gaps = 43/439 (9%)

Query: 1   MIRGYMQANF--PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I GY++       +S+F     L M  EPN  TF  ++ AC  LG L N G  +H  V 
Sbjct: 181 LISGYVKTGLFNEAISLF-----LRMNVEPNVGTFVSILGACGKLGRL-NLGKGIHGLVF 234

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K  +GE+  V +++L                               D Y K     +AR+
Sbjct: 235 KCLYGEELVVCNAVL-------------------------------DMYMKCDSVTDARK 263

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F++MPE++ +SW++++    +    +E L LF QMQ  G +P+   L SVL+ACA LG 
Sbjct: 264 MFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGL 323

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G WVH Y   + ++ +V + T +VDMY+KCG +  A  +F G+ +K+   WNA I G
Sbjct: 324 LDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSKNIRTWNAYIGG 383

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM-SAVYGVE 297
           +A+NG  K++L+ F+ +V+SGT+P E TF+AV T C H  +V +G   F  M S +Y + 
Sbjct: 384 LAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNEMTSPLYNLS 443

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P LEHY C+VDLL RAG+V EA + I+         D  + GALLS+   YG +     +
Sbjct: 444 PCLEHYGCMVDLLCRAGLVGEAVELIKTMP---MPPDVQILGALLSSRNTYGNVGFTQEM 500

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            + L  +   D   +VL  N+Y       E   VR+L+ + G+ K PG S+I V+G+  E
Sbjct: 501 LKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQKGISKAPGSSIIRVDGMSHE 560

Query: 418 FLAGDNRHAQAGEIYRVIH 436
           FL GDN H Q+ EIY +++
Sbjct: 561 FLVGDNSHPQSEEIYVLLN 579



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/365 (26%), Positives = 165/365 (45%), Gaps = 40/365 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY     P L++  Y   +  GF P+ YTFP ++K+C     +     F H+  VK 
Sbjct: 80  LISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFSGIGEVRQF-HSVSVKT 138

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D +V ++L+  YS+                                GD   A ++F
Sbjct: 139 GLWCDIYVQNTLVHVYSIC-------------------------------GDNVGAGKVF 167

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M  R+ VSW+ +++ Y +   F E +SLF +M    ++PN    VS+L AC  LG + 
Sbjct: 168 EDMLVRDVVSWTGLISGYVKTGLFNEAISLFLRMN---VEPNVGTFVSILGACGKLGRLN 224

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H    +    + +++  AV+DMY KC  V  A  +F+ +  KD  +W +MI G+ 
Sbjct: 225 LGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLV 284

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
                ++SL+LF +M  SG +P      +VL+ C    ++  G  + E +   + ++  +
Sbjct: 285 QCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDC-HRIKWDV 343

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                +VD+ A+ G ++ A++       G+   +   W A +    I G  +   + +  
Sbjct: 344 HIGTTLVDMYAKCGCIDMAQRIFN----GMPSKNIRTWNAYIGGLAINGYGKEALKQFED 399

Query: 361 LAEMG 365
           L E G
Sbjct: 400 LVESG 404


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/407 (36%), Positives = 234/407 (57%), Gaps = 44/407 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+   + ++  + +M      PN  T   ++ AC   G LE  G +V + +   
Sbjct: 235 MIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE-LGNWVRSWIEDH 293

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G +  +V++L++ YS                               K GD + AR+LF
Sbjct: 294 GLGSNLRLVNALIDMYS-------------------------------KCGDLDKARDLF 322

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E + E++ +SW+ ++  YS ++ +KE L+LFR+MQ+  ++PN+   VS+L ACA+LGA+ 
Sbjct: 323 EGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALD 382

Query: 181 QGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            G W+H+Y  K++    N  L T+++DMY+KCG++ +A  VF G+  K  G+WNAMISG+
Sbjct: 383 LGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G A  +LELF +M   G +P + TFV VL+ C+HA +V  G   F +M   Y + P+
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK 502

Query: 300 LEHYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           L+HY C++DLL RAG+ +EAE   K +E K       D  +WG+LL ACR++G +E+G  
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMK------PDGAIWGSLLGACRVHGNVELGEF 556

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKK 402
             + L E+   +   +VL  NIY  AG WD +  ++R  +++ GMKK
Sbjct: 557 AAKHLFELEPENPGAYVLLSNIYATAGRWD-DVARIRTKLNDKGMKK 602



 Score =  245 bits (626), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/365 (34%), Positives = 212/365 (58%), Gaps = 5/365 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG   ++ P  ++  Y+ ML  G EPN+YTFP L+K+C  +G  +  G  +H HV+K 
Sbjct: 103 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE-GKQIHGHVLKL 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DPFV +SL+  Y+   ++G A  +F KS  RD V++T ++ GY   G  ++AR LF
Sbjct: 162 GLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLF 221

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++P R+AVSW+A++A Y++   F+E L+ F++M+   + PNES +V+VL+ACA  G++ 
Sbjct: 222 EEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLE 281

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WV S+ + + L  N+ L  A++DMYSKCG +  A  +FEGI  KD  +WN MI G +
Sbjct: 282 LGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYS 341

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
                K++L LF +M +S  +P + TFV++L  C +   +  G  +   +   +      
Sbjct: 342 HMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNT 401

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
             +  ++D+ A+ G +E A++       G+       W A++S   ++G   +   ++R+
Sbjct: 402 SLWTSLIDMYAKCGNIEAAKQVF----AGMKPKSLGSWNAMISGLAMHGHANMALELFRQ 457

Query: 361 LAEMG 365
           + + G
Sbjct: 458 MRDEG 462



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 142/345 (41%), Gaps = 65/345 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H+ ++K G     F +S L+EF ++             SP                 G+
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAI-------------SP----------------FGN 81

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              A  LFE + + N   W+ ++   S  S     +  + +M   G++PN      +L +
Sbjct: 82  LSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKS 141

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH------------------- 213
           CA +GA  +G  +H +  +  LE +  + T++++MY++ G                    
Sbjct: 142 CAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSF 201

Query: 214 ------------VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                       +  A  +FE I  +DA +WNAMI+G A +G  +++L  F  M ++   
Sbjct: 202 TALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVA 261

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E+T V VL+ C  +  +  G N   +    +G+   L     ++D+ ++ G +++A  
Sbjct: 262 PNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             E    G+   D   W  ++         +    ++RK+ +  +
Sbjct: 321 LFE----GICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV 361



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/197 (19%), Positives = 90/197 (45%), Gaps = 10/197 (5%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM--YSKCGHVHSALSVFEGI 224
           +++L+ C     + Q   +HS   +  L       + +++    S  G++  AL +FE I
Sbjct: 36  LTLLSTCKSFQNLKQ---IHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESI 92

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
              +   WN MI G +++     +++ + RM+  G +P   TF  +L +C      ++G 
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +  ++  + G+E     +  ++++ A+ G +  AE    +        DA  + AL++ 
Sbjct: 153 QIHGHVLKL-GLESDPFVHTSLINMYAQNGELGYAELVFSKS----SLRDAVSFTALITG 207

Query: 345 CRIYGKIEVGNRVWRKL 361
             + G ++   R++ ++
Sbjct: 208 YTLRGCLDDARRLFEEI 224


>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
 gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
          Length = 537

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 238/454 (52%), Gaps = 29/454 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNY-------------TFPPLIKACVILGPLE 47
           M R +  +     ++  + DML  G  P+N              +FP  +       P  
Sbjct: 84  MARAHAASGQTAQALAVFGDMLADGVLPDNVALAVALAACHGTGSFPAALGMAAARRP-- 141

Query: 48  NFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY 107
             G  VHA +V  G   D FV + L+  Y    ++  +R LFD  P +  V+W  MV  Y
Sbjct: 142 --GKMVHALIVTSGIVPDVFVSTELIRLYGEYGELLVSRRLFDAMPVKSTVSWNAMVHQY 199

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNES 164
            +  +  +A ELF  MP+R+ VSW+ I+A Y  I  F E L LFRQM       + PN  
Sbjct: 200 IRHSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGP 259

Query: 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
            + +VL ACA  G +  G+WVH+Y  R  +  +  L  +++DMY+KCG +  AL VFE  
Sbjct: 260 TISTVLAACAGAGCLETGIWVHAYIDRNRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKA 319

Query: 225 SNK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
             K D  +W  +I G+AM+G A  +L +F  M  +G +P + T V VL  C H  +V +G
Sbjct: 320 PGKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPDDVTLVGVLNACAHGGLVDEG 379

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALL 342
           L+ F ++   Y + P++EHY CV+DLL R G ++EA   I   +M      +A +WGA L
Sbjct: 380 LHHFYSLEK-YAITPKIEHYGCVIDLLGRVGRLQEAYSIIRTMRM----KPNAVIWGAFL 434

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMK 401
           +AC+++  +E+G     +L  +   D    V+  ++Y +A  W   A + R++ S   MK
Sbjct: 435 NACKVHSNVELGEIAAAELTRLDPDDPWAKVMLSSLYAKAQDWSSLARERREMNS-LQMK 493

Query: 402 KKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           K PGCS IE++G V EF+AG  +H Q GEI  V+
Sbjct: 494 KTPGCSSIELDGEVHEFVAGSFQHPQHGEICTVL 527



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/311 (20%), Positives = 128/311 (41%), Gaps = 50/311 (16%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y  +G   +AR+LF++MP+   V+ +A+  A++      + L++F  M   G+ 
Sbjct: 51  TALLSAYAALGRPRHARDLFDEMPDPGLVTRTAMARAHAASGQTAQALAVFGDMLADGVL 110

Query: 161 PNESGLVSVLTACAHLGAITQGL----------WVHSYAKRYHLEKNVILATAVVDMYSK 210
           P+   L   L AC   G+    L           VH+      +  +V ++T ++ +Y +
Sbjct: 111 PDNVALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGE 170

Query: 211 CG-------------------------------HVHSALSVFEGISNKDAGAWNAMISGV 239
            G                               +V  A  +F  +  +D  +WN +I+G 
Sbjct: 171 YGELLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELFLAMPKRDVVSWNTIIAGY 230

Query: 240 AMNGDAKKSLELFDRMVKSGT---QPTETTFVAVLTTCTHAKMVRDGLNLFENMSA-VYG 295
            + G   ++LELF +M+   +    P   T   VL  C  A  +  G+ +   +      
Sbjct: 231 CLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYIDRNRMN 290

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            +  L+    ++D+ A+ G +E+A +  E+  G     D   W  ++    ++GK     
Sbjct: 291 DDGSLDR--SLIDMYAKCGSIEKALQVFEKAPGKR---DLYSWTTVICGLAMHGKAADAL 345

Query: 356 RVWRKLAEMGI 366
           R++  + + GI
Sbjct: 346 RMFGMMQDNGI 356


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 149/425 (35%), Positives = 239/425 (56%), Gaps = 35/425 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++ N  +     ++ M++    PN+ T   LI +C  +G ++  G  +HA++++ 
Sbjct: 203 MIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQ-LGKRLHAYILRN 261

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG                  M  A A             T +VD YGK G+  +AR +F
Sbjct: 262 GFG------------------MSLALA-------------TALVDMYGKCGEIRSARAIF 290

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M  ++ ++W+A+++AY++ +       LF QM++ G++PNE  +VS+L+ CA  GA+ 
Sbjct: 291 DSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALD 350

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W H+Y  +  +E +VIL TA++DMY+KCG +  A  +F    ++D   WN M++G  
Sbjct: 351 MGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYG 410

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  +K+L+LF  M   G +P + TF+  L  C+HA +V +G  LFE M   +G+ P++
Sbjct: 411 MHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKV 470

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EA K IE         +  +WGA+L+AC+I+    +G    R+
Sbjct: 471 EHYGCMVDLLGRAGLLDEAYKMIESMP---VTPNIAIWGAMLAACKIHKNSNMGELAARE 527

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L  +   +    VL  NIY  A    +   +RK + +TG+KK+PG S IEVNG+V +F  
Sbjct: 528 LLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHDFKM 587

Query: 421 GDNRH 425
           GD  H
Sbjct: 588 GDTAH 592



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 126/439 (28%), Positives = 220/439 (50%), Gaps = 31/439 (7%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P+ ++  Y  M  +  E +++  P ++KAC  +  +   G  +H   VK G   D FVV+
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQIS-VARMGKEIHGFSVKNGLVSDVFVVN 148

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
           +L++ YS    + +AR LFDK  +RDVV+W+TM+  Y           LF    +R+ VS
Sbjct: 149 ALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAY---------ITLFYGFSQRSIVS 199

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+A++A Y R +D +E   LF +M E  + PN+  ++S++ +C  +GA+  G  +H+Y  
Sbjct: 200 WTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYIL 259

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           R     ++ LATA+VDMY KCG + SA ++F+ + NKD   W AMIS  A       + +
Sbjct: 260 RNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQ 319

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL---FENMSAVYGVEPQLEHYACVV 307
           LF +M  +G +P E T V++L+ C     V   L++   F       GVE  +     ++
Sbjct: 320 LFVQMRDNGVRPNELTMVSLLSLCA----VNGALDMGKWFHAYIDKQGVEVDVILKTALI 375

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           D+ A+ G +  A++   E +      D   W  +++   ++G  E   +++ ++  +G+ 
Sbjct: 376 DMYAKCGDISGAQRLFSEAI----DRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVK 431

Query: 368 DFS-THVLSYNIYKEAGWDMEANKV-RKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
               T + + +    AG  +E   +  K+I + G+  K     +E  G + + L    R 
Sbjct: 432 PNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPK-----VEHYGCMVDLLG---RA 483

Query: 426 AQAGEIYRVIHSFLKMSNL 444
               E Y++I S     N+
Sbjct: 484 GLLDEAYKMIESMPVTPNI 502


>gi|115479089|ref|NP_001063138.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|51091508|dbj|BAD36246.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51091564|dbj|BAD36301.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113631371|dbj|BAF25052.1| Os09g0407800 [Oryza sativa Japonica Group]
 gi|215740507|dbj|BAG97163.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 612

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/413 (36%), Positives = 235/413 (56%), Gaps = 34/413 (8%)

Query: 27  EPNNYTFPPLIKACVILGPLE---------------NFGMFVHAHVVKFGFG-------- 63
            P+  T+  L++AC+ LG L                ++   V  +V +            
Sbjct: 154 RPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDG 213

Query: 64  ---EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D    +S++  YS    M  AR +FD  P+RDVV+W +M+DGY + GD E AR +F
Sbjct: 214 MARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVF 273

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
           + MP+R+ VSW+ I+A Y+++ D++E L LF  M  E    PNE   VSVLTACA+LG +
Sbjct: 274 DGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDL 333

Query: 180 TQGLWVHSYAKRY--HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +G WVH   +     L  +V+L T ++ MY+KCG + +A  +F  +  K   +WN+MI 
Sbjct: 334 EKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMII 393

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G  ++G ++K+LELF  M + G +P ETTF+ VL++C H  +V +G   F+ M   Y +E
Sbjct: 394 GYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIE 453

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+ EH+ C++DLL RAG++E++E  IE   G +      +WG L+SA +    I++G  V
Sbjct: 454 PKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEA---LWGILMSASQTQNNIKLGEFV 510

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVI 409
            +KL EM  T+   ++L  NIY   G WD +  KVRK++ E G++K  G S++
Sbjct: 511 GKKLIEMRPTEVGPYILLSNIYAAEGRWD-DVEKVRKVMEEKGVEKDAGLSLV 562



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 132/273 (48%), Gaps = 18/273 (6%)

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           +AR L    P  D VTW T++    ++G    AR LF++MPER+ VS+++++A Y    D
Sbjct: 144 SARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGD 203

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL--EKNVILA 201
                +LF  M              V+T  + +   ++   + +  K +    E++V+  
Sbjct: 204 LAGARNLFDGMAR----------RDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSW 253

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-T 260
            +++D Y++ G V  A  VF+G+  +   +WN +++  A   D ++ L LFD M+  G T
Sbjct: 254 NSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNT 313

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-VEPQLEHYACVVDLLARAGMVEEA 319
            P E TFV+VLT C +   +  G  + + +   +  + P +     ++ + A+ G++E A
Sbjct: 314 VPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETA 373

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
                E    +G      W +++    ++G+ E
Sbjct: 374 ----REIFNSMGEKSVPSWNSMIIGYGLHGQSE 402


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 153/435 (35%), Positives = 238/435 (54%), Gaps = 39/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +    K ++  + +M+     P+  T   ++ AC     +E  G  VH+ +   
Sbjct: 169 MISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVE-LGRQVHSWIDDH 227

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  +V++L++ YS                               K G  E A  LF
Sbjct: 228 GFGSNLKIVNALIDLYS-------------------------------KCGQVETACGLF 256

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  ++ VSW+ ++  Y+ ++ +KE L LF++M   G  PN+  +VS+L ACAHLGAI 
Sbjct: 257 EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAID 316

Query: 181 QGLWVHSY--AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y   K   +     L T+++DMY+KCG + +A  VF  + +K   +WNAMI G
Sbjct: 317 IGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 376

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A    +LF RM K+G +P + TFV +L+ C+H+  +  G ++F++M+  Y + P
Sbjct: 377 FAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITP 436

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL  +G+ +EA++ I+         D  +W +LL ACR +G +E+     
Sbjct: 437 KLEHYGCMIDLLGHSGLFKEAKEMIKTMP---MEPDGVIWCSLLKACRRHGNLELAESFA 493

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           R L ++   +  ++VL  NIY  AG WD E  KVR L++  GMKK PGCS IE++  V E
Sbjct: 494 RNLMKVEPENPGSYVLLSNIYATAGEWD-EVAKVRALLNGKGMKKVPGCSSIEIDSEVHE 552

Query: 418 FLAGDNRHAQAGEIY 432
           F+ GD  H +  EIY
Sbjct: 553 FIVGDKLHPRNREIY 567



 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 210/370 (56%), Gaps = 12/370 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+RGY  ++ P  ++  Y+ M+ +G  PN+YTFP L+K+C      E  G  +H HV+K 
Sbjct: 37  MLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEE-GQQIHGHVLKL 95

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D +V +SL+  Y+   ++  A  +FD+S  RDVV++T ++ GY   G+  +A+E+F
Sbjct: 96  GYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMF 155

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+A+++ Y+    +KE L LF++M +  ++P+E  +V+VL+ACA   ++ 
Sbjct: 156 DEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVE 215

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   +    N+ +  A++D+YSKCG V +A  +FEG+S KD  +WN +I G  
Sbjct: 216 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYT 275

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG----LNLFENMSAVYGV 296
                K++L LF  M++SG  P + T V++L  C H   +  G    + + + +  V   
Sbjct: 276 HMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNA 335

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P L     ++D+ A+ G +E A +     +        + W A++    ++G+   G  
Sbjct: 336 -PSLR--TSLIDMYAKCGDIEAAHQVFNSML----HKSLSSWNAMIFGFAMHGRANAGFD 388

Query: 357 VWRKLAEMGI 366
           ++ ++ + GI
Sbjct: 389 LFSRMRKNGI 398



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 117/261 (44%), Gaps = 36/261 (13%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F  A  +F  + E N + W+ ++  Y+  SD    L L+  M  +G+ PN      +L +
Sbjct: 16  FPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKS 75

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK---------------------- 210
           CA   A  +G  +H +  +   E ++ + T+++ MY++                      
Sbjct: 76  CAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSY 135

Query: 211 ---------CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                     G++ SA  +F+ I  KD  +WNAMISG A  G  K++LELF  M+K+  +
Sbjct: 136 TALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVR 195

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P E T V VL+ C  ++ V  G  +   +   +G    L+    ++DL ++ G VE A  
Sbjct: 196 PDEGTMVTVLSACAQSRSVELGRQVHSWIDD-HGFGSNLKIVNALIDLYSKCGQVETACG 254

Query: 322 FIEEKMGGLGGGDANVWGALL 342
             E    GL   D   W  L+
Sbjct: 255 LFE----GLSCKDVVSWNTLI 271


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/417 (34%), Positives = 235/417 (56%), Gaps = 39/417 (9%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           +  ML  GF+PN +TF  ++++C  +L P   FG  VHAH++K    +D FV        
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCSSLLDP--EFGKQVHAHIIKNSSDDDDFV-------- 290

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
                 GTA                 +VD Y K    E+A   F+++  R+  SW+ I++
Sbjct: 291 ------GTA-----------------LVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIIS 327

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
            Y++    ++ +  FRQMQ  G+KPNE  L S L+ C+H+  +  G  +H+ A +     
Sbjct: 328 GYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG 387

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           ++ + +A+VD+Y KCG +  A ++F+G+ ++D  +WN +ISG + +G  +K+LE F  M+
Sbjct: 388 DIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMML 447

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G  P E TF+ VL+ C+   +V +G   F++MS +YG+ P +EHYAC+VD+L RAG  
Sbjct: 448 SEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKF 507

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            E + FIEE         + +W  +L AC+++G ++ G +  +KL EM     S+++L  
Sbjct: 508 NEVKIFIEEMN---LTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLS 564

Query: 377 NIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           NI+   G WD +   +R L++  G+KK+PGCS +EV+G V  FL+ D  H +  EIY
Sbjct: 565 NIFASKGRWD-DVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIY 620



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/231 (35%), Positives = 129/231 (55%), Gaps = 5/231 (2%)

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           E A  LF  MPE+N VSW+A++  Y+++ D K+VL LF +M+E   K ++  L +VL  C
Sbjct: 2   ELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGC 61

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A+ G++ +G  +H+ A R   E +  L  ++VDMYSKCG V+ AL VF  I N D  AW+
Sbjct: 62  ANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI+G+   G  +++ ELF  M + G +P + T  ++++T T+   +R G ++   +   
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK- 180

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
           YG E        ++ +  ++  VE+  K  E     +   D   W ALLS 
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFE----AMTNPDLVSWNALLSG 227



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 160/372 (43%), Gaps = 49/372 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G  Q    + +   +  M   G  PN +T   L+     +G L  +G  +H  + K+
Sbjct: 123 MITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLR-YGQSIHGCICKY 181

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  V + L+  Y        +R +                         E+  ++F
Sbjct: 182 GFESDNLVSNPLIMMYM------KSRCV-------------------------EDGNKVF 210

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M   + VSW+A+++ +           +F QM   G KPN    +SVL +C+ L    
Sbjct: 211 EAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPE 270

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH++  +   + +  + TA+VDMY+K   +  A   F+ + N+D  +W  +ISG A
Sbjct: 271 FGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYA 330

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
               A+K+++ F +M + G +P E T  + L+ C+H   + +G  L       + V  + 
Sbjct: 331 QTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKA 383

Query: 301 EHY------ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            H+      + +VDL  + G +E AE   +    GL   D   W  ++S    +G+ E  
Sbjct: 384 GHFGDIFVGSALVDLYGKCGCMEHAEAIFK----GLISRDIVSWNTIISGYSQHGQGEKA 439

Query: 355 NRVWRKLAEMGI 366
              +R +   GI
Sbjct: 440 LEAFRMMLSEGI 451



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 125/277 (45%), Gaps = 36/277 (12%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           ++ GY Q    K  L +FC +   +  F  + +T   ++K C   G L   G  +HA  +
Sbjct: 22  LLNGYAQLGDGKKVLKLFCKMKECETKF--SKFTLSTVLKGCANTGSLRE-GKVLHALAL 78

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + G   D F+  SL                               VD Y K G   +A +
Sbjct: 79  RSGCEIDEFLGCSL-------------------------------VDMYSKCGTVYDALK 107

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F K+   + V+WSA++    +    +E   LF  M+  G +PN+  L S+++   ++G 
Sbjct: 108 VFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGD 167

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +H    +Y  E + +++  ++ MY K   V     VFE ++N D  +WNA++SG
Sbjct: 168 LRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSG 227

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
              +    +   +F +M+  G +P   TF++VL +C+
Sbjct: 228 FYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS 264



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 33/213 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q +  + +V  +  M   G +PN YT    +  C  +  LEN G  +HA  VK 
Sbjct: 325 IISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLEN-GRQLHAVAVKA 383

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV S+L++ Y     M  A A+F     RD+V+W T++ GY + G  E A    
Sbjct: 384 GHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKA---- 439

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L  FR M   G+ P+E+  + VL+AC+ +G + 
Sbjct: 440 ---------------------------LEAFRMMLSEGIMPDEATFIGVLSACSFMGLVE 472

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           +G     S +K Y +  ++     +VD+  + G
Sbjct: 473 EGKKRFDSMSKIYGINPSIEHYACMVDILGRAG 505


>gi|125605648|gb|EAZ44684.1| hypothetical protein OsJ_29310 [Oryza sativa Japonica Group]
          Length = 612

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/413 (36%), Positives = 235/413 (56%), Gaps = 34/413 (8%)

Query: 27  EPNNYTFPPLIKACVILGPLE---------------NFGMFVHAHVVKFGFG-------- 63
            P+  T+  L++AC+ LG L                ++   V  +V +            
Sbjct: 154 RPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGDLAGARNLFDG 213

Query: 64  ---EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D    +S++  YS    M  AR +FD  P+RDVV+W +M+DGY + GD E AR +F
Sbjct: 214 MARRDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSWNSMLDGYAQAGDVEMARLVF 273

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
           + MP+R+ VSW+ I+A Y+++ D++E L LF  M  E    PNE   VSVLTACA+LG +
Sbjct: 274 DGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNTVPNEKTFVSVLTACANLGDL 333

Query: 180 TQGLWVHSYAKRY--HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +G WVH   +     L  +V+L T ++ MY+KCG + +A  +F  +  K   +WN+MI 
Sbjct: 334 EKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETAREIFNSMGEKSVPSWNSMII 393

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G  ++G ++K+LELF  M + G +P ETTF+ VL++C H  +V +G   F+ M   Y +E
Sbjct: 394 GYGLHGQSEKALELFLEMERDGPRPNETTFICVLSSCAHGGLVLEGWWCFDRMVRFYSIE 453

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+ EH+ C++DLL RAG++E++E  IE   G +      +WG L+SA +    I++G  V
Sbjct: 454 PKSEHFGCMMDLLGRAGLLEQSENLIENLQGKVSEA---LWGILMSASQTQNNIKLGEFV 510

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVI 409
            +KL EM  T+   ++L  NIY   G WD +  KVRK++ E G++K  G S++
Sbjct: 511 GKKLIEMRPTEVGPYILLSNIYAAEGRWD-DVEKVRKVMEEKGVEKDAGLSLV 562



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 132/273 (48%), Gaps = 18/273 (6%)

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           +AR L    P  D VTW T++    ++G    AR LF++MPER+ VS+++++A Y    D
Sbjct: 144 SARRLLADIPRPDAVTWNTLLRACLRLGLLPAARRLFDEMPERDVVSYNSMVAGYVAEGD 203

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL--EKNVILA 201
                +LF  M              V+T  + +   ++   + +  K +    E++V+  
Sbjct: 204 LAGARNLFDGMAR----------RDVVTWNSMISGYSRHGDMENARKMFDAMPERDVVSW 253

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-T 260
            +++D Y++ G V  A  VF+G+  +   +WN +++  A   D ++ L LFD M+  G T
Sbjct: 254 NSMLDGYAQAGDVEMARLVFDGMPKRSIVSWNVILALYAKLRDWRECLGLFDVMIAEGNT 313

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-VEPQLEHYACVVDLLARAGMVEEA 319
            P E TFV+VLT C +   +  G  + + +   +  + P +     ++ + A+ G++E A
Sbjct: 314 VPNEKTFVSVLTACANLGDLEKGRWVHDLVQERWDRLVPDVLLLTTLLTMYAKCGVMETA 373

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
                E    +G      W +++    ++G+ E
Sbjct: 374 ----REIFNSMGEKSVPSWNSMIIGYGLHGQSE 402


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 250/448 (55%), Gaps = 15/448 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q      ++  +++M+  GF P+  T   ++ AC  L   E  G  VHAH+VK 
Sbjct: 223 LITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAA-EREGRQVHAHMVKR 281

Query: 61  GFGEDPFVVS-SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
               D  V++ +L++ Y+   +   AR +FD  P R VV+ T+++ GY K  + E+A+ +
Sbjct: 282 DRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVV 341

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M E+N ++W+ ++AAY++  + +E + LF Q++   + P      +VL AC ++  +
Sbjct: 342 FSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVL 401

Query: 180 TQGLWVHSYAKR------YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
             G   H +  +      +  E +V +  ++VDMY K G +     VFE ++ +D  +WN
Sbjct: 402 QLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWN 461

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI G A NG AK +L LF+RM+ S   P   T + VL+ C H+ +V +G   F  M+  
Sbjct: 462 AMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTED 521

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+ P  +HY C+VDLL RAG ++EAE+ I++        D+ +W +LL ACR++  +E+
Sbjct: 522 HGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMP---TEPDSVLWASLLGACRLHKNVEL 578

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G R   +L E+   +   +VL  N+Y E G   +  +VR+ + + G+ K+PGCS IE+  
Sbjct: 579 GERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGS 638

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSFLKM 441
            +  FLA DNRH    E    IHS L++
Sbjct: 639 KMNVFLARDNRHPCRNE----IHSTLRI 662



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 137/293 (46%), Gaps = 42/293 (14%)

Query: 88  LFDKSPDRDVV-TWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
           L  +SP  D V   T +VD Y K     +AR +F+ MPERN VSW++++  Y +     E
Sbjct: 176 LVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGE 235

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY-AKRYHLEKNVILATAVV 205
            L LF +M   G  P+E  L SV++ACA L A  +G  VH++  KR  L  +++L  A+V
Sbjct: 236 ALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALV 295

Query: 206 DMYSKCG-------------------------------HVHSALSVFEGISNKDAGAWNA 234
           DMY+KCG                               +V  A  VF  +  K+  AWN 
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNV 355

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN-----LFEN 289
           +I+  A NG+ ++++ LF ++ +    PT  T+  VL  C +  +++ G       L E 
Sbjct: 356 LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEG 415

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
               +G E  +     +VD+  + G +++  K  E     +   D   W A++
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER----MAARDNVSWNAMI 464



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 131/269 (48%), Gaps = 2/269 (0%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H  V+K     + F++++L+  Y+ + ++  AR +FD  P R+  ++  ++  Y ++G  
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSR--ISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           + AR LFE +P+ +  S++A++AA +R       + L     M       N     S L+
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA    +  G  VH    R     +V + TA+VDMY+KC     A  VF+ +  ++  +
Sbjct: 160 ACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVS 219

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN++I+    NG   ++L LF  M+ +G  P E T  +V++ C      R+G  +  +M 
Sbjct: 220 WNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMV 279

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAE 320
               +   +     +VD+ A+ G   EA 
Sbjct: 280 KRDRLRDDMVLNNALVDMYAKCGRTWEAR 308


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 248/435 (57%), Gaps = 11/435 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV-K 59
           +I G ++A     S+  + +M     EP+ YTF  L+ AC +L      G  VH  V  K
Sbjct: 152 VINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLED-RGIGRVVHGLVYRK 210

Query: 60  FG-FGEDPFVVSSLLEFYSLVHKMGTA-RALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
            G FGE+  +V++L++ Y+    +  A R + + +    V  WT++V  Y   G+ E AR
Sbjct: 211 LGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSLVSAYALRGEVEVAR 270

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF++M ER+ VSW+A+++ Y     F+E L LF +++++GM+P+E  +V+ L+ACA LG
Sbjct: 271 RLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLG 330

Query: 178 AITQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWN 233
           A+  G  +H    R  +    N     AVVDMY+KCG + +AL VF   S+  K    +N
Sbjct: 331 ALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYN 390

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           +++SG+A +G  + ++ LF+ M   G +P E T+VA+L  C H+ +V  G  LFE+M + 
Sbjct: 391 SIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFESMLSE 450

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           YGV PQ+EHY C+VDLL RAG + EA   I+         +A +W ALLSAC++ G +E+
Sbjct: 451 YGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMP---FKANAVIWRALLSACKVDGDVEL 507

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
                ++L  M     + +V+  N+        EA  VR+ I   G++K PG S +E+NG
Sbjct: 508 ARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAASVRRAIDNVGIQKPPGWSHVEMNG 567

Query: 414 VVEEFLAGDNRHAQA 428
            + +FLAGD  H +A
Sbjct: 568 TLHKFLAGDKSHPEA 582



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/444 (27%), Positives = 183/444 (41%), Gaps = 105/444 (23%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +IR +  +  P  ++  Y  ML       P+ +TFP L+K+C  L  L   G+ VH HV 
Sbjct: 49  IIRAFSLSQTPHNALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKLS-LPRLGLQVHTHVF 107

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GF  + FVV++LL+ Y +      A  +FD+SP RD V++ T+++G  + G       
Sbjct: 108 KSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAG------- 160

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
                  R   S                 + +F +M+   ++P+E   V++L+AC+ L  
Sbjct: 161 -------RAGCS-----------------MRIFAEMRGGFVEPDEYTFVALLSACSLLED 196

Query: 179 ITQGLWVHS--YAKRYHLEKNVILATAVVDMYSKC------------------------- 211
              G  VH   Y K     +N +L  A+VDMY+KC                         
Sbjct: 197 RGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNGNGKSGVAAWTSL 256

Query: 212 -------GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
                  G V  A  +F+ +  +D  +W AMISG    G  +++LELF  +   G +P E
Sbjct: 257 VSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDE 316

Query: 265 TTFVAVLTTCT-----------HAKMVRDGLNLFEN---------MSAVYG-VEPQLE-- 301
              VA L+ C            H K  RD      N         M A  G +E  L+  
Sbjct: 317 VVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVF 376

Query: 302 -----------HYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYG 349
                       Y  ++  LA  G  E A    EE ++ GL   D   + ALL AC   G
Sbjct: 377 LKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGL-EPDEVTYVALLCACGHSG 435

Query: 350 KIEVGNRVWRK-LAEMGITDFSTH 372
            ++ G R++   L+E G+     H
Sbjct: 436 LVDHGKRLFESMLSEYGVNPQMEH 459



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 138/288 (47%), Gaps = 13/288 (4%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHL 176
           LF ++P  +   ++ I+ A+S        LSL+++M      + P+      +L +CA L
Sbjct: 34  LFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPPIFPDTFTFPFLLKSCAKL 93

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
                GL VH++  +   E NV +  A++ +Y   G   +A  VF+    +D+ ++N +I
Sbjct: 94  SLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSVSYNTVI 153

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK---MVRDGLNLFENMSAV 293
           +G+   G A  S+ +F  M     +P E TFVA+L+ C+  +   + R    L       
Sbjct: 154 NGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLVYRKLGC 213

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G    L +   +VD+ A+ G +E AE+ +     G G      W +L+SA  + G++EV
Sbjct: 214 FGENELLVN--ALVDMYAKCGCLEVAERVVRN---GNGKSGVAAWTSLVSAYALRGEVEV 268

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
             R++ ++ E  +  ++  +  Y     AG   EA ++   + + GM+
Sbjct: 269 ARRLFDQMGERDVVSWTAMISGYC---HAGCFQEALELFVELEDLGME 313



 Score = 45.4 bits (106), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 37/216 (17%)

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ--PTETTFVAVL 271
           +H +  +F  I N D   +N +I   +++     +L L+ +M+ S     P   TF  +L
Sbjct: 28  LHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLYKKMLSSSPPIFPDTFTFPFLL 87

Query: 272 TTCTHAKMVRDGLNLFENM------SAVYGVEPQLEHY--------AC------------ 305
            +C    + R GL +  ++      S V+ V   L+ Y        AC            
Sbjct: 88  KSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDSV 147

Query: 306 ----VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN----RV 357
               V++ L RAG    + +   E  GG    D   + ALLSAC +     +G      V
Sbjct: 148 SYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGLV 207

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393
           +RKL   G  +   + L  ++Y + G    A +V +
Sbjct: 208 YRKLGCFGENELLVNAL-VDMYAKCGCLEVAERVVR 242


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/496 (32%), Positives = 253/496 (51%), Gaps = 70/496 (14%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           R Y   + P  ++  +LD+     +   +T+  LIKA    G     G   HAHVVK G 
Sbjct: 105 RAYALNSLPHAALAVFLDVPLR--QRGTFTYSFLIKALAAAGLTPVRG--AHAHVVKLGS 160

Query: 63  GEDPFVVSSLLEFYS----------LVHKMGT---------------------ARALFDK 91
            ED FV ++L++ YS          +  +M T                     AR++FD+
Sbjct: 161 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDE 220

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF------- 144
            P++D V+W TM+DGY K G+ E A ELF++MP RN VSWS +++AY +  D        
Sbjct: 221 MPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIF 280

Query: 145 ------------------------KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                   +E   LF +M +  ++ +   +VS+L ACA  G++ 
Sbjct: 281 DKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLA 340

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAMISGV 239
            G  +H + ++  L ++ ++  A++DM+ KCG V+ A  +F+  I  KD  +WN +I G 
Sbjct: 341 LGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 400

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G  +K+LELF +M + G  P   T + VL+ CTH  +V +G   F NM   YG++PQ
Sbjct: 401 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQ 460

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL R G+++EA   I+         +  +WG+LLSACR++  +E       
Sbjct: 461 IEHYGCMVDLLGRGGLIKEAVDMIKRMP---WEPNEVIWGSLLSACRLHKNVEYAELAVN 517

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L+ +  +    + +  NIY EAG   +  K R  +  TG +K  G S IE+N    EF 
Sbjct: 518 ELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFT 577

Query: 420 AGDNRHAQAGEIYRVI 435
            GD +H ++ +I  +I
Sbjct: 578 VGDRKHPESDQISDMI 593



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 135/334 (40%), Gaps = 42/334 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------PDRDVVTWTTMV 104
           +HA ++K G   DP   S L+  Y+L+ ++   R +F  +        P    +   T++
Sbjct: 45  LHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLL 104

Query: 105 DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES 164
             Y        A  +F  +P R   +++     YS          L + +   G+ P   
Sbjct: 105 RAYALNSLPHAALAVFLDVPLRQRGTFT-----YS---------FLIKALAAAGLTPVRG 150

Query: 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLE-----------KNVILATAVVDMYSKCGH 213
               V+   +          + +Y+K   L            ++V+     +    + G 
Sbjct: 151 AHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGE 210

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           V +A S+F+ +  KD  +WN M+ G A  G+A+K+ ELF RM       + +T V+    
Sbjct: 211 VDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVV-SWSTVVSAYCK 269

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
               +M R    +F+ M A       L  +  +V   A+ G+VEEA +   E M      
Sbjct: 270 KGDMEMAR---VIFDKMPA-----KNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIEL 321

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           D     ++L+AC   G + +G R+ R + +  ++
Sbjct: 322 DVIAVVSILAACAESGSLALGKRIHRHVRQRKLS 355


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/507 (31%), Positives = 260/507 (51%), Gaps = 72/507 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +   + P  + F + +M   G   +N+T+P L+KAC  L  L    M +H H+ K 
Sbjct: 88  LIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKM-MHNHIEKL 146

Query: 61  GFGEDPFVVSSLLEFYS------------LVHKMG---------------------TARA 87
           G   D +V ++L++ YS            L  KM                       AR 
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARK 206

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD---- 143
           LFD+ P RD+++W TM+DGY +  +   A ELFEKMPERN VSWS ++  YS+  D    
Sbjct: 207 LFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMA 266

Query: 144 -----------------------------FKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
                                         KE   L  QM   G++ + +  +S+L ACA
Sbjct: 267 RVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACA 326

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
             G ++ G+  HS  K+ +L  N  +  A++DMY+KCG +  A  VF  +  KD  +WN 
Sbjct: 327 ESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNT 386

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M+ G+ ++G  K+++ELF RM K G  P + TF+AVL +C HA ++ +G++ F +M  VY
Sbjct: 387 MLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVY 446

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            + P++EHY C+VDLL R G ++EA K ++         +  +WGALL ACR++ ++++ 
Sbjct: 447 DLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMP---MEPNVVIWGALLGACRMHNEVDIA 503

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
             V   L ++  +D   + L  NIY  A  W+  A+ +R  +   G++K  G S +E+  
Sbjct: 504 KEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVAD-IRSKMKSMGVEKPSGASSVELED 562

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            + EF   D  H ++ +IY+++ S ++
Sbjct: 563 GIHEFTVFDKSHPKSDQIYQMLGSLIE 589



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 6/177 (3%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F ++ E N    ++++ A++  S   +   +F +MQ  G+  +      +L AC+ 
Sbjct: 70  ALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--HVHSALSVFEGISNKDAGAWN 233
           L  +     +H++ ++  L  ++ +  A++D YS+CG   V  A+ +FE +S +D  +WN
Sbjct: 130 LSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +M+ G+   G+ + + +LFD M     Q    ++  +L      + +     LFE M
Sbjct: 190 SMLGGLVKAGELRDARKLFDEM----PQRDLISWNTMLDGYARCREMSRAFELFEKM 242



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 101/259 (38%), Gaps = 53/259 (20%)

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L  CA+L  + Q   +H+   R +L +++ +A  ++   S C   + AL VF  +   + 
Sbjct: 26  LPKCANLNQVKQ---LHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNV 82

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH------AKM---- 279
              N++I   A+N    ++  +F  M + G      T+  +L  C+        KM    
Sbjct: 83  HLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNH 142

Query: 280 ---------------------------VRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
                                      VRD + LFE MS     E     +  ++  L +
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMS-----ERDTVSWNSMLGGLVK 197

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
           AG + +A K  +E    +   D   W  +L       ++     ++ K+ E     +ST 
Sbjct: 198 AGELRDARKLFDE----MPQRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTM 253

Query: 373 VLSYNIYKEAGWDMEANKV 391
           V+ Y+   +AG DME  +V
Sbjct: 254 VMGYS---KAG-DMEMARV 268


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/438 (33%), Positives = 245/438 (55%), Gaps = 39/438 (8%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           RGY+ A    L+ FC +   + G +PN  T   ++ AC  +G L+  G  +H  VVK G 
Sbjct: 141 RGYLGAC---LNAFCRMRT-ESGRQPNEVTLLSVVSACADMGALDE-GKSLHGVVVKLGM 195

Query: 63  GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
                VV+SL                               ++ YGK+G  + A +LFE+
Sbjct: 196 SGKAKVVNSL-------------------------------INMYGKLGFLDAASQLFEE 224

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP R+ VSW++++  ++     ++ + LF  M+  G+ P+++ +V++L AC   G   Q 
Sbjct: 225 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 284

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             +H+Y  R     ++I+ATA++++Y+K G ++++  +FE I ++D  AW AM++G A++
Sbjct: 285 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 344

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
              +++++LFD MVK G +    TF  +L+ C+H+ +V +G   FE MS VY VEP+L+H
Sbjct: 345 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 404

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y+C+VDLL R+G +E+A + I+        G   VWGALL ACR+YG +E+G  V  +L 
Sbjct: 405 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSG---VWGALLGACRVYGNVELGKEVAEQLL 461

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
            +  +D   +++  NIY  AG   +A+KVR L+ E  + + PGCS IE    +  F+ GD
Sbjct: 462 SLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGD 521

Query: 423 NRHAQAGEIYRVIHSFLK 440
             H ++ EI+  +   ++
Sbjct: 522 QLHPRSDEIHTKLEELIR 539



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 130/242 (53%), Gaps = 6/242 (2%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKP 161
           +V  Y K+G  E+A+ LF++MP ++ VSW+++M+  S        L+ F +M+ E G +P
Sbjct: 103 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 162

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           NE  L+SV++ACA +GA+ +G  +H    +  +     +  ++++MY K G + +A  +F
Sbjct: 163 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 222

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           E +  +   +WN+M+     NG A+K ++LF+ M ++G  P + T VA+L  CT   + R
Sbjct: 223 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGR 282

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
              ++   +    G    +     +++L A+ G +  +E   EE    +   D   W A+
Sbjct: 283 QAESIHAYIHRC-GFNADIIIATALLNLYAKLGRLNASEDIFEE----IKDRDRIAWTAM 337

Query: 342 LS 343
           L+
Sbjct: 338 LA 339


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/438 (33%), Positives = 243/438 (55%), Gaps = 39/438 (8%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           RGY+ A    L+ FC +   + G +PN  T   ++ AC  +G L+  G  +H  VVK G 
Sbjct: 218 RGYLGAC---LNAFCRMRT-ESGRQPNEVTLLSVVSACAXMGALDE-GKSLHGVVVKLGM 272

Query: 63  GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
                VV+SL+  Y                               GK+G  + A +LFE+
Sbjct: 273 SGKAKVVNSLINMY-------------------------------GKLGFLDAASQLFEE 301

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP R+ VSW++++  ++     ++ + LF  M+  G+ P+++ +V++L AC   G   Q 
Sbjct: 302 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 361

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             +H+Y  R     ++I+ATA++++Y+K G ++++  +FE I ++D  AW AM++G A++
Sbjct: 362 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVH 421

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
              +++++LFD MVK G +    TF  +L+ C+H+ +V +G   FE MS VY VEP+L+H
Sbjct: 422 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 481

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y+C+VDLL R+G +E+A + I+        G   VWGALL ACR+YG +E+G  V  +L 
Sbjct: 482 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSG---VWGALLGACRVYGNVELGKEVAEQLL 538

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
            +  +D   +++  NIY  AG    A+KVR L+ E  + + PGCS IE    +  F+ GD
Sbjct: 539 SLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGD 598

Query: 423 NRHAQAGEIYRVIHSFLK 440
             H ++ EI+  +   ++
Sbjct: 599 QLHPRSDEIHTKLEELIR 616



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 158/320 (49%), Gaps = 20/320 (6%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL--LEFYSLVHKMGTA 85
           PN+       K  V LG L N  +   + V         F +SS   + + S +H    A
Sbjct: 113 PNSSNDSTRTKVAVFLGKLHNSSLLADSIVQSL-----VFAISSCTSVSYCSAIH----A 163

Query: 86  RALFDKSPD-RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           R +  KS +  D      +V  Y K+G  E+A+ LF++MP R+ VSW+++M+  S     
Sbjct: 164 RVI--KSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYL 221

Query: 145 KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
              L+ F +M+ E G +PNE  L+SV++ACA +GA+ +G  +H    +  +     +  +
Sbjct: 222 GACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNS 281

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +++MY K G + +A  +FE +  +   +WN+M+     NG A+K ++LF+ M ++G  P 
Sbjct: 282 LINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPD 341

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + T VA+L  CT   + R   ++   +    G    +     +++L A+ G +  +E   
Sbjct: 342 QATMVALLRACTDTGLGRQAESIHAYIHRC-GFNADIIIATALLNLYAKLGRLNASEDIF 400

Query: 324 EEKMGGLGGGDANVWGALLS 343
           EE    +   D   W A+L+
Sbjct: 401 EE----IKDRDTIAWTAMLA 416


>gi|449453704|ref|XP_004144596.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g10330-like [Cucumis sativus]
          Length = 477

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 233/414 (56%), Gaps = 9/414 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y+  N P+ ++  Y  ML    +PN +TFP +IK+  I   L      +HAH  K 
Sbjct: 58  LIRAYLNFNRPRFALLLYTQMLSQQTKPNFHTFPSIIKSATICSSL--LPKLIHAHAFKI 115

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DP V++S +  Y+ + ++  AR +FD+  +  +V + +M+D + K GD  +A  +F
Sbjct: 116 GVLTDPVVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFVKNGDLGSAVFMF 175

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHL--- 176
             MPE + VSW++++  +     F E L  F  M   G +KPNE+  VSVL++ A+L   
Sbjct: 176 RSMPEHDVVSWTSVINGFWWNGRFLEALWFFHVMMMSGSVKPNEATYVSVLSSSANLDAE 235

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G + +G  VH+Y  R   E +V + T ++D Y K G +  A +VF  +  ++   WNAMI
Sbjct: 236 GVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCARTVFNQMKKREVCTWNAMI 295

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           S  A NG   ++L+LF  M   G  P E TFVA+LT C   K+V+ GL LF++M   + +
Sbjct: 296 SSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSMLYDFSI 355

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  EHY CVVDLL +AG++ EA +FIE         DA+V GALLSAC+I+G  E+GN 
Sbjct: 356 VPITEHYVCVVDLLGKAGLLREATEFIESMP---FDPDASVLGALLSACKIHGATELGNE 412

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           V R+L EM       +V   ++   A     A  +R+++++  ++K P  S ++
Sbjct: 413 VGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARIQKTPAYSRVD 466


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/496 (32%), Positives = 253/496 (51%), Gaps = 70/496 (14%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           R Y   + P  ++  +LD+     +   +T+  LIKA    G     G   HAHVVK G 
Sbjct: 177 RAYALNSLPHAALAVFLDVPLR--QRGTFTYSFLIKALAAAGLTPVRG--AHAHVVKLGS 232

Query: 63  GEDPFVVSSLLEFYS----------LVHKMGT---------------------ARALFDK 91
            ED FV ++L++ YS          +  +M T                     AR++FD+
Sbjct: 233 AEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDE 292

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF------- 144
            P++D V+W TM+DGY K G+ E A ELF++MP RN VSWS +++AY +  D        
Sbjct: 293 MPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIF 352

Query: 145 ------------------------KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                   +E   LF +M +  ++ +   +VS+L ACA  G++ 
Sbjct: 353 DKMPAKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLA 412

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAMISGV 239
            G  +H + ++  L ++ ++  A++DM+ KCG V+ A  +F+  I  KD  +WN +I G 
Sbjct: 413 LGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGF 472

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G  +K+LELF +M + G  P   T + VL+ CTH  +V +G   F NM   YG++PQ
Sbjct: 473 AMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQ 532

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL R G+++EA   I+         +  +WG+LLSACR++  +E       
Sbjct: 533 IEHYGCMVDLLGRGGLIKEAVDMIKRMP---WEPNEVIWGSLLSACRLHKNVEYAELAVN 589

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L+ +  +    + +  NIY EAG   +  K R  +  TG +K  G S IE+N    EF 
Sbjct: 590 ELSNLQPSSAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELNEAFHEFT 649

Query: 420 AGDNRHAQAGEIYRVI 435
            GD +H ++ +I  +I
Sbjct: 650 VGDRKHPESDQISDMI 665



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 42/334 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------PDRDVVTWTTMV 104
           +HA ++K G   DP   S L+  Y+L+ ++   R +F  +        P    +   T++
Sbjct: 117 LHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSPFPSSTTLLTKTLL 176

Query: 105 DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES 164
             Y        A  +F  +P R   +++     YS          L + +   G+ P   
Sbjct: 177 RAYALNSLPHAALAVFLDVPLRQRGTFT-----YS---------FLIKALAAAGLTPVRG 222

Query: 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLE--KNVILATAVVDMYS---------KCGH 213
               V+   +          + +Y+K   L   K V       D+ S         + G 
Sbjct: 223 AHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQGE 282

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           V +A S+F+ +  KD  +WN M+ G A  G+A+K+ ELF RM       + +T V+    
Sbjct: 283 VDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVV-SWSTVVSAYCK 341

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
               +M R    +F+ M A       L  +  +V   A+ G+VEEA +   E M      
Sbjct: 342 KGDMEMAR---VIFDKMPA-----KNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIEL 393

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           D     ++L+AC   G + +G R+ R + +  ++
Sbjct: 394 DVIAVVSILAACAESGSLALGKRIHRHVRQRKLS 427


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 147/421 (34%), Positives = 230/421 (54%), Gaps = 35/421 (8%)

Query: 18   YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
            + +++  G  P+NYT P +I+AC  L  L+  G  +H  V KFG   D FV ++L     
Sbjct: 824  FRELIRCGARPDNYTLPFVIRACRDLKNLQ-MGRLIHHIVYKFGLDLDHFVCAAL----- 877

Query: 78   LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                      VD YGK  + E+AR LF+KM ER+ V+W+ ++  
Sbjct: 878  --------------------------VDMYGKCREIEDARFLFDKMXERDLVTWTVMIGG 911

Query: 138  YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
            Y+   +  E L LF +M+E G+ P++  +V+V+ ACA LGA+ +   +  Y +R   + +
Sbjct: 912  YAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLD 971

Query: 198  VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
            VIL TA++DM++KCG V SA  +F+ +  K+  +W+AMI+    +G  +K+L+LF  M++
Sbjct: 972  VILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLR 1031

Query: 258  SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            SG  P + T V++L  C+HA +V +GL  F  M   Y V   ++HY CVVDLL RAG ++
Sbjct: 1032 SGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLD 1091

Query: 318  EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
            EA K I          D  +WGA L ACR +  + +  +    L E+   +   ++L  N
Sbjct: 1092 EALKLIXSMT---XEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSN 1148

Query: 378  IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
            IY  AG   +  K+R L+S+  +KK PG + IEV+    +F  GD  H ++ EIY ++ S
Sbjct: 1149 IYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKS 1208

Query: 438  F 438
             
Sbjct: 1209 L 1209



 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 232/432 (53%), Gaps = 43/432 (9%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + +++  G  P+NYT P +I+AC  L  L+  G  +H  V KFG   D FV ++L     
Sbjct: 148 FRELIRCGARPDNYTLPFVIRACRDLKNLQ-MGRLIHHIVYKFGLDLDHFVCAAL----- 201

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     VD Y K  + E+AR LF+KM ER+ V+W+ ++  
Sbjct: 202 --------------------------VDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 235

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y+      E L LF +M+E G+ P++  +V+V+ ACA LGA+ +   +  Y +R   + +
Sbjct: 236 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 295

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           VIL TA++DMY+KCG V SA  +F+ +  K+  +W+AMI+    +G  +K+L+LF  M+ 
Sbjct: 296 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLS 355

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           SG  P + T  ++L  C+HA +V +GL  F +M   Y V   ++HY CVVDLL RAG ++
Sbjct: 356 SGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLD 415

Query: 318 EAEKFIE----EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           EA K I+    EK       D  +WGA L ACR +  + +  +    L E+   +   +V
Sbjct: 416 EALKLIKSMTIEK-------DEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYV 468

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  NIY  AG   +  K+R L+S+  +KK PG + IEV+    +F  GD  H ++ EIY 
Sbjct: 469 LLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYE 528

Query: 434 VIHSFLKMSNLV 445
           ++ S      LV
Sbjct: 529 MLKSLSNKLELV 540



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 127/266 (47%), Gaps = 25/266 (9%)

Query: 95   RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
            ++++    +V  Y      ++A  LF+ M  R++VSWS ++  ++++ D+      FR++
Sbjct: 768  QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFREL 827

Query: 155  QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
               G +P+   L  V+ AC  L  +  G  +H    ++ L+ +  +  A+VDMY KC  +
Sbjct: 828  IRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREI 887

Query: 215  HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
              A  +F+ +  +D   W  MI G A  G+A +SL LFD+M + G  P +   V V+  C
Sbjct: 888  EDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFAC 947

Query: 275  T------HAKMVRDGLNLFE-NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF---IE 324
                    A+ + D +   +  +  + G          ++D+ A+ G VE A +    +E
Sbjct: 948  AKLGAMHKARTIDDYIQRKKFQLDVILG--------TAMIDMHAKCGCVESAREIFDRME 999

Query: 325  EKMGGLGGGDANVWGALLSACRIYGK 350
            EK       +   W A+++A   +G+
Sbjct: 1000 EK-------NVISWSAMIAAYGYHGQ 1018



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 35/299 (11%)

Query: 67  FVVSSLLEFYSL-----VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F +S+L+   +L     VH   +   + +     ++V    ++  Y      ++A  LF+
Sbjct: 64  FYISALVNCRNLTQVRQVHAQASVHGMLE-----NIVVANKLIYFYSYYRALDDAYGLFD 118

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            M  R++VSWS ++  ++++ D+      FR++   G +P+   L  V+ AC  L  +  
Sbjct: 119 GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM 178

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  +H    ++ L+ +  +  A+VDMY KC  +  A  +F+ +  +D   W  MI G A 
Sbjct: 179 GRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 238

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT------HAKMVRDGLNLFE-NMSAVY 294
            G A +SL LF++M + G  P +   V V+  C        A+++ D +   +  +  + 
Sbjct: 239 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 298

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGK 350
           G          ++D+ A+ G VE A +    +EEK       +   W A+++A   +G+
Sbjct: 299 G--------TAMIDMYAKCGCVESAREIFDRMEEK-------NVISWSAMIAAYGYHGQ 342



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +      S+  +  M + G  P+      ++ AC  LG +      +  ++ + 
Sbjct: 232 MIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHK-ARIIDDYIQRK 290

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  D  + +++++ Y+    + +AR +FD+  +++V++W+ M+  YG  G    A    
Sbjct: 291 KFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA---- 346

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L LF  M   GM P++  L S+L AC+H G + 
Sbjct: 347 ---------------------------LDLFPMMLSSGMLPDKITLASLLYACSHAGLVE 379

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +GL +  S  + Y +  +V   T VVD+  + G +  AL + + ++  KD G W A +  
Sbjct: 380 EGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGA 439

Query: 239 VAMNGD 244
              + D
Sbjct: 440 CRTHKD 445



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 58/246 (23%), Positives = 106/246 (43%), Gaps = 34/246 (13%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MI GY +      S+  +  M + G  P+      ++ AC  LG +      +  ++ + 
Sbjct: 908  MIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHK-ARTIDDYIQRK 966

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             F  D  + +++++ ++    + +AR +FD+  +++V++W+ M+  YG  G    A    
Sbjct: 967  KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA---- 1022

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                       L LF  M   G+ PN+  LVS+L AC+H G + 
Sbjct: 1023 ---------------------------LDLFPMMLRSGILPNKITLVSLLYACSHAGLVE 1055

Query: 181  QGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            +GL   S   + Y +  +V   T VVD+  + G +  AL +   ++  KD G W A +  
Sbjct: 1056 EGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGA 1115

Query: 239  VAMNGD 244
               + D
Sbjct: 1116 CRTHKD 1121



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +TQ   VH  A  + + +N+I+A  +V  YS    +  A  +F+G+  +D+ +W+ M+ G
Sbjct: 751 LTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGG 810

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A  GD       F  +++ G +P   T   V+  C   K ++ G  L  ++   +G++ 
Sbjct: 811 FAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMG-RLIHHIVYKFGLD- 868

Query: 299 QLEHYAC--VVDLLARAGMVEEAEKFIEEKM 327
            L+H+ C  +VD+  +   +E+A +F+ +KM
Sbjct: 869 -LDHFVCAALVDMYGKCREIEDA-RFLFDKM 897


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/438 (33%), Positives = 244/438 (55%), Gaps = 39/438 (8%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           RGY+ A    L+ FC +   + G +PN  T   ++ AC  +G L+  G  +H  VVK G 
Sbjct: 198 RGYLGAC---LNAFCRMRT-ESGRQPNEVTLLSVVSACADMGALDE-GKSLHGVVVKLGM 252

Query: 63  GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
                VV+SL+  Y                               GK+G  + A +LFE+
Sbjct: 253 SGKAKVVNSLINMY-------------------------------GKLGFLDAASQLFEE 281

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MP R+ VSW++++  ++     ++ + LF  M+  G+ P+++ +V++L AC   G   Q 
Sbjct: 282 MPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQA 341

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             +H+Y  R     ++I+ATA++++Y+K G ++++  +FE I ++D  AW AM++G A++
Sbjct: 342 ESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVH 401

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
              +++++LFD MVK G +    TF  +L+ C+H+ +V +G   FE MS VY VEP+L+H
Sbjct: 402 ACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDH 461

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y+C+VDLL R+G +E+A + I+        G   VWGALL ACR+YG +E+G  V  +L 
Sbjct: 462 YSCMVDLLGRSGRLEDAYELIKSMPMEPSSG---VWGALLGACRVYGNVELGKEVAEQLL 518

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
            +  +D   +++  NIY  AG   +A+KVR L+ E  + + PGCS IE    +  F+ GD
Sbjct: 519 SLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGD 578

Query: 423 NRHAQAGEIYRVIHSFLK 440
             H ++ EI+  +   ++
Sbjct: 579 QLHPRSDEIHTKLEELIR 596



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 130/242 (53%), Gaps = 6/242 (2%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKP 161
           +V  Y K+G  E+A+ LF++MP ++ VSW+++M+  S        L+ F +M+ E G +P
Sbjct: 160 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 219

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           NE  L+SV++ACA +GA+ +G  +H    +  +     +  ++++MY K G + +A  +F
Sbjct: 220 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 279

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           E +  +   +WN+M+     NG A+K ++LF+ M ++G  P + T VA+L  CT   + R
Sbjct: 280 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGR 339

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
              ++   +    G    +     +++L A+ G +  +E   EE    +   D   W A+
Sbjct: 340 QAESIHAYIHRC-GFNADIIIATALLNLYAKLGRLNASEDIFEE----IKDRDRIAWTAM 394

Query: 342 LS 343
           L+
Sbjct: 395 LA 396


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/366 (37%), Positives = 218/366 (59%), Gaps = 8/366 (2%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D    +++++ Y  +  +G AR LF++  +R+VV+WT+MV GY   GD ENA+ +F+ M
Sbjct: 220 RDIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLM 279

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           PE+N  +W+A++  Y +     + L LFR+MQ   ++PNE  +V VL A A LGA+  G 
Sbjct: 280 PEKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGR 339

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           W+H +A R  L+++  + TA++DMY+KCG +  A   FEG++ ++  +WNA+I+G A+NG
Sbjct: 340 WIHRFALRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNG 399

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
            AK++LE+F RM++ G  P E T + VL+ C H  +V +G   F  M   +G+ PQ+EHY
Sbjct: 400 CAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAMER-FGIAPQVEHY 458

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVWRKL 361
            C+VDLL RAG ++EAE  I+         DAN  +  + L AC  +  +    RV +++
Sbjct: 459 GCMVDLLGRAGCLDEAENLIQTM-----PYDANGIILSSFLFACGYFNDVLRAERVLKEV 513

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            +M       +V+  N+Y       +   V++++ + G  K+  CSVIE+ G   EF AG
Sbjct: 514 VKMDEDVAGNYVMLRNLYATRQRWTDVEDVKQMMKKRGTSKEVACSVIEIGGSFIEFAAG 573

Query: 422 DNRHAQ 427
           D  H+ 
Sbjct: 574 DYLHSH 579



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 93/222 (41%), Gaps = 32/222 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q      ++  + +M     EPN  T   ++ A   LG L+  G ++H      
Sbjct: 290 MIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALD-LGRWIH------ 342

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                    R    K  DR     T ++D Y K G+   A+  F
Sbjct: 343 -------------------------RFALRKKLDRSARIGTALIDMYAKCGEITKAKLAF 377

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M ER   SW+A++  ++     KE L +F +M E G  PNE  ++ VL+AC H G + 
Sbjct: 378 EGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPNEVTMIGVLSACNHCGLVE 437

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +G    +  +R+ +   V     +VD+  + G +  A ++ +
Sbjct: 438 EGRRWFNAMERFGIAPQVEHYGCMVDLLGRAGCLDEAENLIQ 479


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 249/420 (59%), Gaps = 6/420 (1%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           DM   G EP+++T   L+  C  LG  +  G  VHA + K     +  + ++LL+ Y   
Sbjct: 219 DMRSHGLEPDDFTMLGLLLLCGQLGETK-LGKSVHAQIEKSIGSSNLILYNALLDMYVKC 277

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
           +++  AR +FD   ++D V+W T++ GY K+G+ E A +LF ++P R+ VSW+++++ Y+
Sbjct: 278 NELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYA 337

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           +  D+  V  LF +M    +KP++  +V++++A A +GA+ QG W+H  A +   +    
Sbjct: 338 QNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAF 397

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
             +A++DMY KCG +  A  +F  I  KD   W  MI+G A +G   K+LELF  M ++ 
Sbjct: 398 SGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAE 456

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           T+P + TFV+VL  C+H+ +V +GL +F +M   Y +EP +EHY C+VDLL R+G + +A
Sbjct: 457 TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDA 516

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
              I EKM        ++WGA+LSACR++  +E+  R   +L ++       ++L  N+Y
Sbjct: 517 IGVI-EKMP--MEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVY 573

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
              G    ++ +R++++  G+KK  GCS + V+G+V +F A + +H +  +I  ++ SFL
Sbjct: 574 ATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSIL-SFL 632



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 161/388 (41%), Gaps = 88/388 (22%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+  +N    ++  Y  ML  G  P+  TF  L++    +  ++     +H H + F
Sbjct: 103 MILGFPFSNEKAFTI--YRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQ----IHCHALVF 156

Query: 61  GF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G   ++ ++ +SL++ Y                           VD     G FE AR+L
Sbjct: 157 GLLSKEEYLRNSLIKRY---------------------------VDN----GCFECARQL 185

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++M +RN VS++ ++  ++++ +   +L LF  M+  G++P++  ++ +L  C  LG  
Sbjct: 186 FDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGET 245

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG---------------- 223
             G  VH+  ++     N+IL  A++DMY KC  +  A  VF+G                
Sbjct: 246 KLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGY 305

Query: 224 ---------------ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                          I  +D  +WN++ISG A NGD      LF RM     +P + T V
Sbjct: 306 AKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIV 365

Query: 269 AVLTTCTHAKMVRDG-------LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            +++       +  G       + +   + A  G        + ++D+  + G +E A  
Sbjct: 366 NLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSG--------SALIDMYCKCGSIERAFV 417

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYG 349
              +    +   D   W  +++    +G
Sbjct: 418 IFNQ----IPEKDVTTWTTMITGFAFHG 441



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 101/233 (43%), Gaps = 9/233 (3%)

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL-EKNVILATA 203
           ++  +++R M + G  P+    + +L     +  + Q   +H +A  + L  K   L  +
Sbjct: 112 EKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQ---IHCHALVFGLLSKEEYLRNS 168

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++  Y   G    A  +F+ +S+++  ++N MI G A  G+    LELF  M   G +P 
Sbjct: 169 LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPD 228

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + T + +L  C      + G ++   +    G    L  Y  ++D+  +   ++ A K  
Sbjct: 229 DFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG-SSNLILYNALLDMYVKCNELKLARKVF 287

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +  M      D   W  +++     G++E+   ++ ++    I  +++ +  Y
Sbjct: 288 DGPM----EKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGY 336


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/420 (34%), Positives = 249/420 (59%), Gaps = 6/420 (1%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           DM   G EP+++T   L+  C  LG  +  G  VHA + K     +  + ++LL+ Y   
Sbjct: 154 DMRSHGLEPDDFTMLGLLLLCGQLGETK-LGKSVHAQIEKSIGSSNLILYNALLDMYVKC 212

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
           +++  AR +FD   ++D V+W T++ GY K+G+ E A +LF ++P R+ VSW+++++ Y+
Sbjct: 213 NELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGYA 272

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           +  D+  V  LF +M    +KP++  +V++++A A +GA+ QG W+H  A +   +    
Sbjct: 273 QNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAF 332

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
             +A++DMY KCG +  A  +F  I  KD   W  MI+G A +G   K+LELF  M ++ 
Sbjct: 333 SGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELFSVM-QAE 391

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           T+P + TFV+VL  C+H+ +V +GL +F +M   Y +EP +EHY C+VDLL R+G + +A
Sbjct: 392 TKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDA 451

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
              I EKM        ++WGA+LSACR++  +E+  R   +L ++       ++L  N+Y
Sbjct: 452 IGVI-EKMP--MEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILLSNVY 508

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
              G    ++ +R++++  G+KK  GCS + V+G+V +F A + +H +  +I  ++ SFL
Sbjct: 509 ATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSIL-SFL 567



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 161/388 (41%), Gaps = 88/388 (22%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+  +N    ++  Y  ML  G  P+  TF  L++    +  ++     +H H + F
Sbjct: 38  MILGFPFSNEKAFTI--YRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQ----IHCHALVF 91

Query: 61  GF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G   ++ ++ +SL++ Y                           VD     G FE AR+L
Sbjct: 92  GLLSKEEYLRNSLIKRY---------------------------VDN----GCFECARQL 120

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++M +RN VS++ ++  ++++ +   +L LF  M+  G++P++  ++ +L  C  LG  
Sbjct: 121 FDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGET 180

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG---------------- 223
             G  VH+  ++     N+IL  A++DMY KC  +  A  VF+G                
Sbjct: 181 KLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGY 240

Query: 224 ---------------ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                          I  +D  +WN++ISG A NGD      LF RM     +P + T V
Sbjct: 241 AKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIV 300

Query: 269 AVLTTCTHAKMVRDG-------LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            +++       +  G       + +   + A  G        + ++D+  + G +E A  
Sbjct: 301 NLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSG--------SALIDMYCKCGSIERAFV 352

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYG 349
              +    +   D   W  +++    +G
Sbjct: 353 IFNQ----IPEKDVTTWTTMITGFAFHG 376



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/233 (19%), Positives = 101/233 (43%), Gaps = 9/233 (3%)

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL-EKNVILATA 203
           ++  +++R M + G  P+    + +L     +  + Q   +H +A  + L  K   L  +
Sbjct: 47  EKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQ---IHCHALVFGLLSKEEYLRNS 103

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++  Y   G    A  +F+ +S+++  ++N MI G A  G+    LELF  M   G +P 
Sbjct: 104 LIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPD 163

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + T + +L  C      + G ++   +    G    L  Y  ++D+  +   ++ A K  
Sbjct: 164 DFTMLGLLLLCGQLGETKLGKSVHAQIEKSIG-SSNLILYNALLDMYVKCNELKLARKVF 222

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +  M      D   W  +++     G++E+   ++ ++    I  +++ +  Y
Sbjct: 223 DGPM----EKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGY 271


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/483 (32%), Positives = 257/483 (53%), Gaps = 61/483 (12%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILG--PLENFGMFVHAH 56
           M+R Y     P+  L+ F  +   D      ++T+  LIKA    G  P+      VH+H
Sbjct: 423 MLRAYALGGAPRDALAAFSAMPRRD------SFTYSFLIKALSAAGVAPVRA----VHSH 472

Query: 57  VVKFGFGEDPFVVSSLLEFYS-----------------------------LVHK--MGTA 85
           VVK G  ED FV ++L++ YS                             +V +  +  A
Sbjct: 473 VVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGA 532

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P++D V+W T++DGY K G+ E A ELF++MPERN VSWS +++ Y +  D +
Sbjct: 533 RKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLE 592

Query: 146 EVLSLFRQM------------QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
               +F +M            +E  ++ + + +VS+L ACA  G+++ G  +H Y ++ +
Sbjct: 593 MARVIFDKMPGKNLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRN 652

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELF 252
           L ++  +  A++DM+ KCG V+ A  VF+  +  KD+ +WN++I G AM+G   K+LELF
Sbjct: 653 LGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELF 712

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
            +M + G  P   T + VL+ CTH   V +G   F NM   YG+ PQ+EHY C++DLL R
Sbjct: 713 AQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGR 772

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
            G+++EA   I+         +  +WG+LLSACR++  +E       +L+++  ++   +
Sbjct: 773 GGLIKEAVDLIKSMP---WEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNY 829

Query: 373 VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
            +  NIY EAG   +  K R  +  TG +K  G S +E+N    EF  GD +H  + +I 
Sbjct: 830 AVLSNIYAEAGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQIS 889

Query: 433 RVI 435
            ++
Sbjct: 890 EMV 892



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 138/336 (41%), Gaps = 62/336 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFD--KSPDRDVVTWTTMVDGYGKM 110
           +HA V+K G   +P   + L+  Y+L+  + ++R +FD  + P  D     TM+  Y   
Sbjct: 371 LHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYALG 430

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G   +A   F  MP R++ ++S ++ A S                  G+ P  +      
Sbjct: 431 GAPRDALAAFSAMPRRDSFTYSFLIKALS----------------AAGVAPVRA------ 468

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
                         VHS+  +    ++  +  A++D YSK G    A  VF+ +  +D  
Sbjct: 469 --------------VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVV 514

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN  ++ +   G+   + +LFD M +  T     ++  +L   T A  V     LF+ M
Sbjct: 515 SWNTAMAAMVREGELAGARKLFDEMPEKDT----VSWNTILDGYTKAGEVEAAFELFQRM 570

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-------------GGDANV 337
                 E  +  ++ +V    + G +E A + I +KM G                 D   
Sbjct: 571 P-----ERNVVSWSTMVSGYCKKGDLEMA-RVIFDKMPGKNLVTWTIMMKEASVELDVAA 624

Query: 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
             ++L+AC   G + +G R+ R + +  +   STHV
Sbjct: 625 VVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHV 659


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/432 (34%), Positives = 245/432 (56%), Gaps = 5/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +A     +V C+  ML  G EP+  T   L+ AC  L  L  FG  +H  V + 
Sbjct: 208 LISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLV-FGRSLHKLVGEK 266

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G      +V +L++ Y+    +G A  +FD     R   +W  M+DGY K+G  + AR L
Sbjct: 267 GMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYL 326

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++M +R+ V++++++  Y      +E L LF QM+   ++ +   +VS+LTACA LGA+
Sbjct: 327 FDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGAL 386

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG  +H+  ++  +E ++ L TA++DMY KCG V  A  VF+ +S +D   W+AMI+G+
Sbjct: 387 PQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGL 446

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A NG  K +LE F  M   G QP   T++A+LT C+H+ ++ +G   FE M  ++ + P 
Sbjct: 447 AFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPL 506

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C++DLL R+G+++EA   +          +A +W ++LSACR++    +      
Sbjct: 507 IEHYGCMIDLLGRSGLLDEAMDLVRTMP---MQPNAVIWASILSACRVHKDANLARNAAE 563

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L ++   + + +V  YNIY ++    +A+++R+L+ E G+KK  G S I V G V +F+
Sbjct: 564 HLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFI 623

Query: 420 AGDNRHAQAGEI 431
             D  H Q  EI
Sbjct: 624 VCDRTHPQIMEI 635



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 156/369 (42%), Gaps = 44/369 (11%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVV 69
           P+  +  Y  M   G   + +TF  L K C            +HA   +       P V 
Sbjct: 84  PESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLPSAVPLVS 143

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           + ++  Y  +   G AR  FD  P +D V WTT++ G  K+G  ++A  L    P RN +
Sbjct: 144 NPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPARNVI 203

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+ +++ YSR     E +  F  M   G++P+E  ++ +L+ACA L  +  G  +H   
Sbjct: 204 SWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLV 263

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKS 248
               +  +  L  A++DMY+KCG +  A  VF+ +   +   +WNAMI G    G    +
Sbjct: 264 GEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVA 323

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM------------------ 290
             LFD+M          TF +++T   H   +R+ L LF  M                  
Sbjct: 324 RYLFDQMEDRDL----VTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTA 379

Query: 291 SAVYGVEPQ-LEHYACV---------------VDLLARAGMVEEAEKFIEEKMGGLGGGD 334
            A  G  PQ    +AC+               +D+  + G VEEA    +     +   D
Sbjct: 380 CASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQ----AMSVRD 435

Query: 335 ANVWGALLS 343
            + W A+++
Sbjct: 436 VHTWSAMIA 444



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 120/292 (41%), Gaps = 39/292 (13%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF++MP    +  +A+ A +   S  +  L L+R+M+  G+  +      +   CA   A
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRA 118

Query: 179 -ITQGLWVHSYAKRYHLEKNV-ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            +     +H+   R  L   V +++  ++ MY + G    A   F+ I  KDA AW  +I
Sbjct: 119 HVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVI 178

Query: 237 SGVA-------------------------------MNGDAKKSLELFDRMVKSGTQPTET 265
           SG+A                                 G A ++++ F+ M+  G +P E 
Sbjct: 179 SGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEV 238

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T + +L+ C   K +  G +L   +    G+    +    ++D+ A+ G +  A     E
Sbjct: 239 TVIGLLSACAQLKDLVFGRSL-HKLVGEKGMLMSGKLVVALIDMYAKCGDIGRA----WE 293

Query: 326 KMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
               LG G     W A++      G ++V   ++ ++ +  +  F++ +  Y
Sbjct: 294 VFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGY 345


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 160/445 (35%), Positives = 243/445 (54%), Gaps = 46/445 (10%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IRG  Q++ P  +V  Y  M     +P+N+TFP ++KAC  L  + N G  VH  V + G
Sbjct: 79  IRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTKLFWV-NTGSVVHGRVFRLG 137

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           FG +  V ++LL F++    +  A  +FD S   DVV W+ ++ GY + GD   AR+LF+
Sbjct: 138 FGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFD 197

Query: 122 KMPERNAVSWSAIMAAYSRISDF-------------------------------KEVLSL 150
           +MP+R+ VSW+ ++ AY++  +                                +E L L
Sbjct: 198 EMPKRDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALEL 257

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDM 207
           F +M EVG  P+E  ++S+L+ACA LG   + +    +AK   L K   + +L  A+VDM
Sbjct: 258 FDEMCEVGECPDEVTMLSLLSACADLGDXGEKV----HAKIMELNKGKLSTLLGNALVDM 313

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG++   + VF  I +KD  +WN++I G+A +G A++SL LF  M ++   P E TF
Sbjct: 314 YAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITF 373

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-K 326
           V VL  C+H   V +G   F  M   Y +EP + H  CVVD+LARAG+++EA  FI   K
Sbjct: 374 VGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMK 433

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WD 385
           +      +A VW +LL AC+++G +E+  R   +L  M +     +VL  N+Y   G WD
Sbjct: 434 I----EPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWD 489

Query: 386 MEANKVRKLISETGMKKKPGCSVIE 410
             A  VRKL+ + G+ K  G S +E
Sbjct: 490 -GAENVRKLMDDNGVTKTRGSSFVE 513



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 117/261 (44%), Gaps = 40/261 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY+  N  + ++  + +M ++G  P+  T   L+ AC  LG   + G  VHA +++ 
Sbjct: 241 MVGGYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSACADLG---DXGEKVHAKIMEL 297

Query: 61  GFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             G+    + ++L++ Y+    +G    +F    D+D+V+W +++ G    G  E     
Sbjct: 298 NKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAE----- 352

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                     E L LFR+MQ   + P+E   V VL AC+H G +
Sbjct: 353 --------------------------ESLGLFREMQRTKVCPDEITFVGVLAACSHTGNV 386

Query: 180 TQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G  + +    +Y +E N+     VVDM ++ G +  A      +    +A  W +++ 
Sbjct: 387 DEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSLLG 446

Query: 238 GVAMNGD---AKKSLELFDRM 255
              ++GD   AK++ E   RM
Sbjct: 447 ACKVHGDVELAKRATEQLLRM 467



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%)

Query: 97  VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
           + T  +MV         + A ++F ++P+ +   W+  +   S+  D    ++L+ QM  
Sbjct: 41  LTTAMSMVGPAATTAVTQYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTH 100

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
             +KP+      VL AC  L  +  G  VH    R     NV++   ++  ++KCG +  
Sbjct: 101 RSVKPDNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKV 160

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           A  +F+     D  AW+A+I+G A  GD   + +LFD M K
Sbjct: 161 ANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPK 201


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/324 (39%), Positives = 213/324 (65%), Gaps = 5/324 (1%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DV    T++D YG++G+   AR+LF+ MP+R+ +SW++++  YS+ S F + + LF++M 
Sbjct: 159 DVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMM 218

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
              +KP++  + SVL+ACAHLG +  G  VH Y +R+ ++ ++ +  +++DMY KCG V 
Sbjct: 219 AAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVE 278

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            AL VF  + +KD+ +W ++ISG+A+NG A  +L+LF +M++ G QPT  TFV +L  C 
Sbjct: 279 KALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACA 338

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           HA +V  GL  FE+M +V+G+ P ++HY CVVDLL+R+G +++A +FI +KM  +   D 
Sbjct: 339 HAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFI-KKMPIV--PDV 395

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKL 394
            VW  LLSAC+++G + +     ++L E+   D   +VL  N Y     WD +A K+R+L
Sbjct: 396 VVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWD-DAMKMREL 454

Query: 395 ISETGMKKKPGCSVIEVNGVVEEF 418
           + ++ ++K  G S IEV+G+V  +
Sbjct: 455 MEDSDVQKPSGSSSIEVDGMVSNY 478



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 142/297 (47%), Gaps = 36/297 (12%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H H +K GF    FV ++L+  Y++  ++G A+ +FD                      
Sbjct: 46  IHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDG--------------------- 84

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                     M +R+ VSW+ ++  YS+ + +KEVL LF  M    +K +   +V ++ A
Sbjct: 85  ----------MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILA 134

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+HLG       +  Y K  +LE +V L   ++DMY + G++ +A  +F+ +  +D  +W
Sbjct: 135 CSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISW 194

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
            +MI+G +       +++LF  M+ +  +P + T  +VL+ C H   +  G  +   +  
Sbjct: 195 TSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRR 254

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
            +GV+  +     ++D+  + GMVE+A +        +   D+  W +++S   + G
Sbjct: 255 -HGVQADIYVGNSLIDMYCKCGMVEKALEVFHR----MKDKDSVSWTSVISGLAVNG 306



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 42/238 (17%)

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           + LV  LT   +   I+  + VH  A +   E  + ++ A++ MY+ CG +  A  +F+G
Sbjct: 27  AALVVALTTNINASTISSSIHVH--ALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDG 84

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH------- 276
           + ++D  +WN +I G +     K+ L LFD M  +  +    T V ++  C+H       
Sbjct: 85  MLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFA 144

Query: 277 ---AKMVRD-------------------------GLNLFENMSAVYGVEPQLEHYACVVD 308
               K +++                            LF+NM      +  +  +  ++ 
Sbjct: 145 DSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMP-----KRDVISWTSMIT 199

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             ++A    +A K  +E M      D     ++LSAC   GK++VG  V   +   G+
Sbjct: 200 GYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGV 257


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 152/445 (34%), Positives = 236/445 (53%), Gaps = 38/445 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY   +  K  V  + +M ++G E N  T   L++ C I G L   GM VH   VKF
Sbjct: 84  LLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNL-GLGMCVHGFCVKF 142

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V + LL  Y                                K G+ +  R+LF
Sbjct: 143 GLDMDSSVGNCLLTMYV-------------------------------KSGEIDCGRKLF 171

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP +  ++W+A++  Y++      VL L+++M+  G  P+   LV VL++CAHLGA++
Sbjct: 172 DEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALS 231

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V    + +    N  L  A+V+MY++CG++  A  +F+G+  K   +W A+I G  
Sbjct: 232 VGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYG 291

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  + ++ LFD M++ G +P  T FV+VL+ C+HA +   GL+ F  M   YG+ P  
Sbjct: 292 MHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGA 351

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+VDLL RAG + EA + IE         D  +WGALL AC+I+  +E+    + +
Sbjct: 352 EHYSCMVDLLGRAGRLNEARELIESMQ---VRADGALWGALLGACKIHRNVELAELAFEQ 408

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+  T+   +VL  N+Y EAG      +VR L+ +  +KK PGCS +E  G V  F A
Sbjct: 409 VIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFA 468

Query: 421 GDNRHAQAGEIYRVIHSFLKMSNLV 445
           GD  H Q  EIY+ ++   ++ NLV
Sbjct: 469 GDRNHPQTNEIYKKLN---ELENLV 490



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 164/356 (46%), Gaps = 37/356 (10%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G  PN +TFP  IK+C  L  L   G  +H HV K G   +PFV +SL+  Y    
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAAL-SLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCS 59

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
            +  AR LFD++P    +T                             V ++++++ Y+ 
Sbjct: 60  LIDNARKLFDENPQSRKLT-----------------------------VCYNSLLSGYAL 90

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
            S  K+V+ LF +M+E+G++ N   ++ ++  C   G +  G+ VH +  ++ L+ +  +
Sbjct: 91  NSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSV 150

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
              ++ MY K G +     +F+ +  K    WNAMI+G A NG A   LEL+  M   G 
Sbjct: 151 GNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGF 210

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV-YGVEPQLEHYACVVDLLARAGMVEEA 319
            P   T V VL++C H   +  G  +   M    +   P L +   +V++ AR G +++A
Sbjct: 211 CPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNN--ALVNMYARCGNLKKA 268

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
               +    G+       W A++    ++G+ EV   ++ ++   GI    T  +S
Sbjct: 269 RDIFD----GMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVS 320


>gi|449528931|ref|XP_004171455.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g10330-like [Cucumis
           sativus]
          Length = 477

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 151/414 (36%), Positives = 233/414 (56%), Gaps = 9/414 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y+  N P+ ++  Y  ML    +PN +TFP +IK+  I   L      +HAH  K 
Sbjct: 58  LIRAYLNFNRPRFALLLYTQMLSQQTKPNFHTFPSIIKSATICSSL--LPKLIHAHAFKI 115

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DP V++S +  Y+ + ++  AR +FD+  +  +V + +M+D + K GD  +A  +F
Sbjct: 116 GVLTDPVVLTSFVSSYADLRELANARKVFDEITNPCIVAFNSMLDAFVKNGDLGSAVFMF 175

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHL--- 176
             MPE + VSW++++  +     F E L  F  M   G +KPNE+  VSVL++ A+L   
Sbjct: 176 RSMPEHDVVSWTSVINGFWWNGRFLEALWFFXVMMMSGSVKPNEATYVSVLSSSANLDAE 235

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G + +G  VH+Y  R   E +V + T ++D Y K G +  A +VF  +  ++   WNAMI
Sbjct: 236 GVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCARTVFNQMKKREVCTWNAMI 295

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           S  A NG   ++L+LF  M   G  P E TFVA+LT C   K+V+ GL LF++M   + +
Sbjct: 296 SSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSMLYDFSI 355

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  EHY CVVDLL +AG++ EA +FIE         DA+V GALLSAC+I+G  E+GN 
Sbjct: 356 VPITEHYVCVVDLLGKAGLLREATEFIESMP---FDPDASVLGALLSACKIHGATELGNE 412

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           V R+L EM       +V   ++   A     A  +R+++++  ++K P  S ++
Sbjct: 413 VGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARIQKTPAYSRVD 466


>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Glycine max]
          Length = 629

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 245/431 (56%), Gaps = 9/431 (2%)

Query: 6   MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           ++ + P  ++  YL M       +       + AC  LG   N    +H  VVKFGF   
Sbjct: 89  IRCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGD-SNLVPQMHVGVVKFGFLRH 147

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
             V++ +++ Y     +G AR +F++  +  VV+WT +++G  K    E+ + +F++MPE
Sbjct: 148 TKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPE 207

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAHLGAITQG 182
           RN V+W+ ++  Y      KE   L ++M      G   N   L SVL+AC+  G ++ G
Sbjct: 208 RNEVAWTVLIKGYVGSGFTKEAFLLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVG 267

Query: 183 LWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
            WVH YA K    +  V++ T++VDMY+KCG + +AL VF  +  ++  AWNAM+ G+AM
Sbjct: 268 RWVHCYAVKAVGWDLGVMVGTSLVDMYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAM 327

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G  K  +E+F  MV+   +P   TF+A+L++C+H+ +V  G   F ++   YG+ P++E
Sbjct: 328 HGMGKVVVEMFACMVEE-VKPDAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIE 386

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HYAC+VDLL RAG +EEAE  +++        +  V G+LL AC  +GK+ +G ++ R+L
Sbjct: 387 HYACMVDLLGRAGRLEEAEDLVKKLPIP---PNEVVLGSLLGACYAHGKLRLGEKIMREL 443

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            +M   +   H+L  N+Y   G   +AN +RK++   G++K PG S I V+G +  F+AG
Sbjct: 444 VQMDPLNTEYHILLSNMYALCGKADKANSLRKVLKNRGIRKVPGMSSIYVDGQLHRFIAG 503

Query: 422 DNRHAQAGEIY 432
           D  H +  +IY
Sbjct: 504 DKSHPRTADIY 514



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 115 NARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           +AR+LF+++P   +++V ++A++    R S   + L  + QM++  +  +   L+  L A
Sbjct: 67  HARKLFDRIPHSHKDSVDYTALI----RCSHPLDALRFYLQMRQRALPLDGVALICALGA 122

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+ LG       +H    ++   ++  +   V+D Y KCG V  A  VFE I      +W
Sbjct: 123 CSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFEEIEEPSVVSW 182

Query: 233 NAMISGVAMNGDAKKSLELFDRM 255
             ++ GV      +    +FD M
Sbjct: 183 TVVLEGVVKCEGVESGKVVFDEM 205


>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
          Length = 616

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 142/360 (39%), Positives = 217/360 (60%), Gaps = 6/360 (1%)

Query: 64  EDPFVVSSLLEFY-SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
            D F  +++++ Y  +   +  AR LFD+ PDRD+V W +M+DGY + G  + AR LFE+
Sbjct: 210 RDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEE 269

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MPERN +SWS ++  Y R  +  E L  F++M   G+KP+    V  + ACA LGA+ QG
Sbjct: 270 MPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQG 329

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            W+HSY ++  +  +V++ TA++DMY KCG +  A  +FE +  K    WN MI G+  +
Sbjct: 330 RWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTH 389

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G    +++LF++M        + + +AVLT+CTHA +V +GL +F  M    G+EP++EH
Sbjct: 390 GYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEH 449

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           Y  ++DLL RAG V++A   IE            +WG+LL++CR +  +E+      +LA
Sbjct: 450 YGALIDLLGRAGRVDQARNTIETMP---MEPTPELWGSLLASCRSHRCVELAELSVERLA 506

Query: 363 EMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            +G  D   +VL  NIY + G WD +  ++RKL+S  GMKK  G SVIEV+G + EF+ G
Sbjct: 507 SLGADDSGVYVLLSNIYADEGMWD-DVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNG 565



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 33/223 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++   P  ++  +  ML  G +P+       + AC  LG LE  G ++H+++ K 
Sbjct: 281 VIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQ-GRWLHSYLEKK 339

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V ++L++ Y    ++  A+ +F+  P + VVTW  M+ G G  G   +A    
Sbjct: 340 KVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDA---- 395

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      + LF QM+      ++  +++VLT+C H G ++
Sbjct: 396 ---------------------------IKLFNQMETERAPMDDLSILAVLTSCTHAGLVS 428

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
           +GL + +   K   LE  V    A++D+  + G V  A +  E
Sbjct: 429 EGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIE 471



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 44/248 (17%)

Query: 114 ENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           ++A  +F  + E   R+A  W+ ++  ++  S  + +L  F +M+   + P+     +VL
Sbjct: 65  DHADSVFAHLAEEASRHAFPWNTLVRLHAAASPRRSLL-YFSRMRRAAVAPDAYTFPAVL 123

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-------------------- 210
            AC        GL VH  A R  L+ ++    A++  Y +                    
Sbjct: 124 KACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHGVRDLVS 183

Query: 211 ----------CGHVHSALSVFEGISNKDAGAWNAMISGVA-MNGDAKKSLELFDRMVKSG 259
                     CG V  A  +F+ +  +DA +W  MI G   M G   ++ ELFD+M    
Sbjct: 184 WNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRD 243

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
                +    +     H +M  +   LFE M      E  +  ++ V+D   R G   EA
Sbjct: 244 LVCWNSM---IDGYARHGRM-DEARVLFEEMP-----ERNVISWSIVIDGYVRFGEPNEA 294

Query: 320 EKFIEEKM 327
            +F +  +
Sbjct: 295 LEFFQRML 302


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 247/442 (55%), Gaps = 39/442 (8%)

Query: 1   MIRGYMQANFPKLSVFC-YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M RGY +   P L VF  ++++L+ G  P+NYTFP L+KAC +   LE  G  +H   +K
Sbjct: 100 MARGYSRFTNP-LEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEE-GRQLHCLSMK 157

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G                                D +V    T+++ Y +  D ++AR +
Sbjct: 158 LGL-------------------------------DDNVYVCPTLINMYTECEDVDSARCV 186

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+++ E   V ++A++  Y+R +   E LSLFR+MQ   +KPNE  L+SVL++CA LG++
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSL 246

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H YAK++   K V + TA++DM++KCG +  A+S+FE +  KD  AW+AMI   
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAY 306

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G A+KS+ +F+RM     QP E TF+ +L  C+H   V +G   F  M + +G+ P 
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY  +VDLL+RAG +E+A +FI++           +W  LL+AC  +  +++  +V  
Sbjct: 367 IKHYGSMVDLLSRAGNLEDAYEFIDKLP---ISPTPMLWRILLAACSSHNNLDLAEKVSE 423

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           ++ E+  +    +V+  N+Y +   W+   + +RK++ +    K PGCS IEVN VV EF
Sbjct: 424 RIFELDDSHGGDYVILSNLYARNKKWEY-VDSLRKVMKDRKAVKVPGCSSIEVNNVVHEF 482

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
            +GD   +   +++R +   +K
Sbjct: 483 FSGDGVKSATTKLHRALDEMVK 504



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LFE M E + V ++++   YSR ++  EV SLF ++ E G+ P+     S+L ACA 
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             A+ +G  +H  + +  L+ NV +   +++MY++C  V SA  VF+ I       +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A      ++L LF  M     +P E T ++VL++C     +  G       +  + 
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHS 260

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
               ++    ++D+ A+ G +++A    E+    +   D   W A++ A   +GK E
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEK----MRYKDTQAWSAMIVAYANHGKAE 313


>gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 524

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 163/425 (38%), Positives = 243/425 (57%), Gaps = 20/425 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           + R Y+       +V+ +  ML     PN++TFP LIKA  +  P  + G  +H  V+K 
Sbjct: 57  LTRAYLNFGQTYNTVYLFTLMLAHQTPPNSHTFPSLIKAATLSFP--SIGTSLHTQVIKR 114

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DPFV +SLL FYS +  +  A  +FD      +V +  M+D Y K  D  +A  LF
Sbjct: 115 GVLCDPFVQTSLLAFYSQIGCLYNAHKVFDGILHPWIVEYNAMLDAYAKNNDMGSAILLF 174

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGM---KPNESGLVSVLTACA 174
           ++M +R+ VSW+ +++ +SR   F+E ++ FR M   ++V +   KPNE+  VSVL++CA
Sbjct: 175 KRMLKRDVVSWTTVISGFSRSGLFREAINFFRVMIAHEDVSLGLVKPNEATYVSVLSSCA 234

Query: 175 HL---GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            L   G++  G  +H    R  +   V + TA++D Y K G ++SA+ VF  ++ K   +
Sbjct: 235 SLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDFYGKVGCLNSAIRVFNSMTIKQICS 294

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WNAMIS +A NG  K++L++F+ M + G  P E TFV VLT CT AK+V+ G+ LF++M 
Sbjct: 295 WNAMISCLANNGREKQALDMFEMMEEKGPSPNEVTFVVVLTACTRAKLVQFGMRLFQSMW 354

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
           + Y V+P +EHY CVVDLL RAG++ EA + I          DA+V GALL AC+I+G  
Sbjct: 355 SDYSVKPIMEHYGCVVDLLGRAGLLREASEIIRSMP---FEPDASVLGALLGACKIHGAN 411

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG---WDMEANKVRKLISETGMKKKPGCSV 408
           ++ N V  +L  +        VL  NI   AG   W + A+ VRK + E G+ K P  S+
Sbjct: 412 KLANEVGGRLLRLQPLHCGQFVLLSNI--NAGLEKWSVAAD-VRKAMVEAGISKVPAYSL 468

Query: 409 IEVNG 413
           I   G
Sbjct: 469 INYMG 473


>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
 gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
          Length = 581

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 208/336 (61%), Gaps = 4/336 (1%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           ++++  Y K G  E+AR++F  M ERN V W+++++ Y+++  FKE ++LFR MQ  GMK
Sbjct: 235 SSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFRDMQITGMK 294

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
            ++  + +V+++CA +GA+  G +VH+Y   + L K + +  +++DMYSKCG ++ A  +
Sbjct: 295 VDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSKCGDINKAHEI 354

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKM 279
           F G++ +D  +W AMI G  +NG   ++L+LF +M   G   P E TF+ VLT+C+H  +
Sbjct: 355 FCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFAQMEGEGKVMPNEVTFLGVLTSCSHGGL 414

Query: 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
           V  G + F+ MS VY + P++EHY C+VDLL RA ++ EAE+FI+         D  VW 
Sbjct: 415 VEQGFHYFQRMSMVYKLAPRIEHYGCMVDLLGRAKLLTEAEQFIKNMP---IAPDVVVWR 471

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399
           +LL ACR  G++ +   V  ++ E+     + HVL  N+Y      ++ N++R  +  + 
Sbjct: 472 SLLFACRACGEVGLAEFVAERILELEPKKCAGHVLLSNVYATTSRWVDVNELRTSMDNSR 531

Query: 400 MKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           M K+PGCS IEV+G V EF AGD  H +   IY ++
Sbjct: 532 MSKQPGCSFIEVDGCVHEFFAGDESHLETEAIYNIL 567



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 32/211 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q    K +V  + DM   G + ++ T   ++ +C  +G L+  G +VHA+    
Sbjct: 268 MISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALD-LGRYVHAYCDVH 326

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G++  V +SL++ YS    +  A  +F     RDV +WT M+ G+   G    A +LF
Sbjct: 327 GLGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLF 386

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M     V                               PNE   + VLT+C+H G + 
Sbjct: 387 AQMEGEGKV------------------------------MPNEVTFLGVLTSCSHGGLVE 416

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSK 210
           QG  +    +  Y L   +     +VD+  +
Sbjct: 417 QGFHYFQRMSMVYKLAPRIEHYGCMVDLLGR 447


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 150/426 (35%), Positives = 248/426 (58%), Gaps = 9/426 (2%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLEN-FGMFVHAHVVKFGFGEDPFV 68
           F  L +F  +   D+  +         + AC  LG  +   G  +H  VVKFGF +   V
Sbjct: 103 FESLKLFIQMRQFDLPLD--GVVMVCALNACARLGGGDTKVGSQMHVGVVKFGFVKFDKV 160

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            ++L+  Y     +G AR +F+    R VV+W+  ++G  K    E+ R LF++MPERN 
Sbjct: 161 CNALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNE 220

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           V+W+ ++  Y      KE   L ++M    G + +   L SVL+AC+  G +  G WVH 
Sbjct: 221 VAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHC 280

Query: 188 YA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
           YA K   L+  V++ T++VDMY+KCG +++ALSVF  +  ++  AWNAM+ G+AM+G  K
Sbjct: 281 YAVKEMGLDFGVMVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMGK 340

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
            ++++F  MV+   +P   TF+A+L+ C+H+ +V  G + F ++  VY ++P++EHYAC+
Sbjct: 341 IAVDMFPSMVEE-VKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYACM 399

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           V LL RAG +EEAE  ++         +  V G+L+ +C  +G++++G ++ R L EM  
Sbjct: 400 VGLLGRAGRLEEAEIMVKNMRIP---PNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDP 456

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
            +   H++  N+Y  +G   +AN +R+++ + G+KK PG S I V+G + +F+AGD  H 
Sbjct: 457 LNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHT 516

Query: 427 QAGEIY 432
           +  EIY
Sbjct: 517 RTSEIY 522


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 146/422 (34%), Positives = 234/422 (55%), Gaps = 11/422 (2%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFYSLV 79
           ML+   EP+  T   +I AC  L  ++  G  VH  VVK      D  + ++ ++ Y+  
Sbjct: 244 MLESRVEPDEVTLASVISACASLSAIK-VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKC 302

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            ++  AR +FD  P R+V+  T+M+ GY      + AR +F KM ERN VSW+A++A Y+
Sbjct: 303 SRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYT 362

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL----- 194
           +  + +E LSLF  ++   + P      ++L ACA L  +  G+  H +  ++       
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSG 422

Query: 195 -EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            E ++ +  +++DMY KCG V     VF  +  +D  +WNAMI G A NG   ++LELF 
Sbjct: 423 EEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFR 482

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M++SG +P   T + VL+ C HA  V +G + F +M+  +GV P  +HY C+VDLL RA
Sbjct: 483 EMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRA 542

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G +EEA+  IEE        D+ +WG+LL+AC+++  I +G  V  KL E+  ++   +V
Sbjct: 543 GFLEEAKSMIEEMP---MQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYV 599

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y E G   +   VRK + + G+ K+PGCS I++ G    F+  D  H +  +I+ 
Sbjct: 600 LLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHS 659

Query: 434 VI 435
           ++
Sbjct: 660 LL 661



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 167/305 (54%), Gaps = 1/305 (0%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D+    ++  F  L+ +C+       +  +VHA V+K GF  + F+ + L++ YS    +
Sbjct: 12  DLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSL 71

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
              R +FDK P R++ TW ++V G  K+G  + A  LF  MPER+  +W+++++ +++  
Sbjct: 72  EDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHD 131

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             +E L  F  M + G   NE    SVL+AC+ L  + +G+ VHS   +     +V + +
Sbjct: 132 RCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGS 191

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A+VDMYSKCG+V+ A  VF+ + +++  +WN++I+    NG A ++L++F  M++S  +P
Sbjct: 192 ALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEP 251

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            E T  +V++ C     ++ G  +   +     +   +      VD+ A+   ++EA +F
Sbjct: 252 DEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA-RF 310

Query: 323 IEEKM 327
           I + M
Sbjct: 311 IFDSM 315



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 156/356 (43%), Gaps = 71/356 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M+ G+ Q +  +    CY  M+   GF  N Y+F  ++ AC  L  + N G+ VH+ + K
Sbjct: 123 MVSGFAQHDRCE-EALCYFAMMHKEGFVLNEYSFASVLSACSGLNDM-NKGVQVHSLIAK 180

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             F  D ++ S+L++ YS    +  A+ +FD+  DR+VV+W +++  + + G        
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGP------- 233

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                   AV                E L +F+ M E  ++P+E  L SV++ACA L AI
Sbjct: 234 --------AV----------------EALDVFQMMLESRVEPDEVTLASVISACASLSAI 269

Query: 180 TQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG--------------- 223
             G  VH    K   L  ++IL+ A VDMY+KC  +  A  +F+                
Sbjct: 270 KVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISG 329

Query: 224 ----------------ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
                           ++ ++  +WNA+I+G   NG+ +++L LF  + +    PT  +F
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSF 389

Query: 268 VAVLTTCTHAKMVRDGLN-----LFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
             +L  C     +  G+      L        G E  +     ++D+  + G VEE
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445



 Score = 43.1 bits (100), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 32/138 (23%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+ Q  +   ++  + +ML+ G +P++ T   ++ AC                    
Sbjct: 464 MIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSAC-------------------- 503

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G   FV      F S+    G A       P RD   +T MVD  G+ G  E A+ + 
Sbjct: 504 --GHAGFVEEGRHYFSSMTRDFGVA-------PLRD--HYTCMVDLLGRAGFLEEAKSMI 552

Query: 121 EKMP-ERNAVSWSAIMAA 137
           E+MP + ++V W +++AA
Sbjct: 553 EEMPMQPDSVIWGSLLAA 570


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 248/438 (56%), Gaps = 14/438 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           M+ G+    F   +V  +  ML  GF P+  T   ++ A   +G LE+   G  VH +V+
Sbjct: 211 MLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPA---VGCLEDVVVGAQVHGYVI 267

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G G D FVVS++L+ Y     +     +FD+  + ++ +    + G  + G  + A E
Sbjct: 268 KQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALE 327

Query: 119 LFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           +F K  ++    N V+W++I+A+ S+     E L LFR MQ  G++PN   + S++ AC 
Sbjct: 328 VFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACG 387

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           ++ A+  G  +H ++ R  +  +V + +A++DMY+KCG +  A   F+ +S  +  +WNA
Sbjct: 388 NISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNA 447

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           ++ G AM+G AK+++E+F  M++SG +P   TF  VL+ C    +  +G   + +MS  +
Sbjct: 448 VMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEH 507

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+EP++EHYAC+V LL+R G +EEA   I+E        DA VWGALLS+CR++  + +G
Sbjct: 508 GIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMP---FEPDACVWGALLSSCRVHNNLSLG 564

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNG 413
                KL  +  T+   ++L  NIY   G WD E N++R+++   G++K PG S IEV  
Sbjct: 565 EIAAEKLFFLEPTNPGNYILLSNIYASKGLWD-EENRIREVMKSKGLRKNPGYSWIEVGH 623

Query: 414 VVEEFLAGDNRHAQAGEI 431
            V   LAGD  H Q  +I
Sbjct: 624 KVHMLLAGDQSHPQMKDI 641



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 190/387 (49%), Gaps = 15/387 (3%)

Query: 9   NFPK-LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPF 67
           +FP  L+ F +L  L +   P+ +  P  IK+C  L  L+  G  +HA     GF  D  
Sbjct: 84  HFPHVLTTFSHLHPLRL--IPDAFLLPSAIKSCASLRALDP-GQQLHAFAAASGFLTDSI 140

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP--- 124
           V SSL   Y    ++  AR LFD+ PDRDVV W+ M+ GY ++G  E A+ELF +M    
Sbjct: 141 VASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGG 200

Query: 125 -ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
            E N VSW+ ++A +     + E + +FR M   G  P+ S +  VL A   L  +  G 
Sbjct: 201 VEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGA 260

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            VH Y  +  L  +  + +A++DMY KCG V     VF+ +   + G+ NA ++G++ NG
Sbjct: 261 QVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNG 320

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
               +LE+F++      +    T+ +++ +C+      + L LF +M A YGVEP   + 
Sbjct: 321 MVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQA-YGVEP---NA 376

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGG---DANVWGALLSACRIYGKIEVGNRVWRK 360
             +  L+   G +       E     L  G   D  V  AL+      G+I++  R + K
Sbjct: 377 VTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDK 436

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDME 387
           ++ + +  ++  +  Y ++ +A   ME
Sbjct: 437 MSALNLVSWNAVMKGYAMHGKAKETME 463



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 141/319 (44%), Gaps = 41/319 (12%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA +++     D  + +SLL FY        A AL   +P   +                
Sbjct: 23  HALILRLNLFSDTQLTTSLLSFY--------ANALSLSTPQLSLT--------------- 59

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
                L   +P     S+S+++ A++R   F  VL+ F  +  + + P+   L S + +C
Sbjct: 60  -----LSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSC 114

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A L A+  G  +H++A       + I+A+++  MY KC  +  A  +F+ + ++D   W+
Sbjct: 115 ASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWS 174

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI+G +  G  +++ ELF  M   G +P   ++  +L    +     + + +F  M  V
Sbjct: 175 AMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFR-MMLV 233

Query: 294 YGVEPQLEHYACVVDLLARAGMVE------EAEKFIEEKMGGLGGGDANVWGALLSACRI 347
            G  P     +CV   L   G +E      +   ++ ++  GL G D  V  A+L     
Sbjct: 234 QGFWPDGSTVSCV---LPAVGCLEDVVVGAQVHGYVIKQ--GL-GSDKFVVSAMLDMYGK 287

Query: 348 YGKIEVGNRVWRKLAEMGI 366
            G ++  +RV+ ++ EM I
Sbjct: 288 CGCVKEMSRVFDEVEEMEI 306


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 139/412 (33%), Positives = 241/412 (58%), Gaps = 5/412 (1%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M+D G  P+  +    I +C  L  +  +G   H +V++ GF     + ++L++ Y   H
Sbjct: 327 MMDSGIRPDRISMLSAISSCSQLRNIL-WGKSCHGYVLRNGFESWDNICNALIDMYMKCH 385

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           +  TA  +FD+  ++ VVTW ++V GY + G+ + A E F  MPE+N VSW+ I++A  +
Sbjct: 386 RQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQ 445

Query: 141 ISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
            + ++E + +F  MQ +  +  +   ++S+ +AC HLGA+    W++ Y ++  ++ +V 
Sbjct: 446 ENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVR 505

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L T +VDM+S+CG   SA+S+F  ++N+D  AW A I  +AM G+ ++++ELF+ M++ G
Sbjct: 506 LGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQG 565

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P    F+  LT C H  +V+ G  +F +M  ++GV P+  HY C+VDLL RAG++EEA
Sbjct: 566 LKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEA 625

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
            + I++        +  +W +LL+ACR+ G +E+      K+  +      ++VL  N+Y
Sbjct: 626 LQLIKDMP---TEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVY 682

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             AG   +  KVR  + E G++K PG SVI++ G   EF +GD  H +  +I
Sbjct: 683 ASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKI 734



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 184/397 (46%), Gaps = 63/397 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  +   K ++  ++ M++ G  P+ YTFP  +  C       N G+ +H  ++K 
Sbjct: 104 LIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGN-GIQIHGLIIKM 162

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            + +D FV +SL+ FY+                               + G+ + AR++F
Sbjct: 163 DYAKDLFVQNSLVHFYA-------------------------------ECGELDCARKVF 191

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAI 179
           ++M ERN VSW++++  Y+R    K+ + LF R +++  + PN   +V V++ACA L  +
Sbjct: 192 DEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDL 251

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  V+ + +   +E N ++ +A+VDMY KC  +  A  +F+     +    NAM S  
Sbjct: 252 ETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNY 311

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFE 288
              G  K++L + + M+ SG +P   + ++ +++C+           H  ++R+G   ++
Sbjct: 312 VRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 371

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
           N+               ++D+  +    + A +  +     +       W ++++     
Sbjct: 372 NICNA------------LIDMYMKCHRQDTAFRIFDR----MSNKTVVTWNSIVAGYIEN 415

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHV---LSYNIYKEA 382
           G+++     +  + E  I  ++T +   +  N+Y+EA
Sbjct: 416 GEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEA 452



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 125/293 (42%), Gaps = 37/293 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY +  F K +V  +  M+ D    PN+ T   +I AC  L  LE  G  V+  +  
Sbjct: 205 MICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLET-GEKVYDFIRD 263

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   +  ++S+L                               VD Y K    + A+ L
Sbjct: 264 SGIEVNDLMISAL-------------------------------VDMYMKCNAIDIAKRL 292

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++    N    +A+ + Y R    KE L +   M + G++P+   ++S +++C+ L  I
Sbjct: 293 FDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNI 352

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G   H Y  R   E    +  A++DMY KC    +A  +F+ +SNK    WN++++G 
Sbjct: 353 LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 412

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
             NG+   + E F+ M +        ++  +++      M  + + +F  M +
Sbjct: 413 IENGEVDAAWETFNTMPEKNI----VSWNTIISALVQENMYEEAIEVFHYMQS 461



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 117/244 (47%), Gaps = 6/244 (2%)

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFEN---ARELFEKMPER-NAVSWSAIMAAYSRIS 142
           +L  +  D DV   T +V    ++G  E+   A+E+FE          +++++  Y+   
Sbjct: 53  SLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSG 112

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             KE + LF +M   G+ P++      L+ CA       G+ +H    +    K++ +  
Sbjct: 113 LCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQN 172

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GTQ 261
           ++V  Y++CG +  A  VF+ +S ++  +W +MI G A    AK +++LF RMV+     
Sbjct: 173 SLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVI 232

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   T V V++ C   + +  G  +++ +    G+E      + +VD+  +   ++ A++
Sbjct: 233 PNSVTMVCVISACAKLEDLETGEKVYDFIRD-SGIEVNDLMISALVDMYMKCNAIDIAKR 291

Query: 322 FIEE 325
             +E
Sbjct: 292 LFDE 295


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 145/439 (33%), Positives = 251/439 (57%), Gaps = 38/439 (8%)

Query: 1   MIRGYMQ-ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIRGY+   NF   +++ Y DML    EP+N+T+P ++KAC  L  ++  GM +H HV K
Sbjct: 103 MIRGYVNNMNFEN-AIYLYNDMLQREVEPDNFTYPVVLKACARLAVIQE-GMQIHGHVFK 160

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G  +D +V +SL                               ++ YGK  D E +  +
Sbjct: 161 LGLEDDVYVQNSL-------------------------------INMYGKCRDIEMSCAI 189

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGA 178
           F +M +++  SWSAI+AA++ ++ + E L+LF  M   G  +  ES LV+VL+AC HLGA
Sbjct: 190 FRRMEQKSVASWSAIIAAHASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGA 249

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
              G   H    +   E NV + T+++DMY KCG +   L +F+ ++ K+  +++ +ISG
Sbjct: 250 FHLGRCAHGSLLKNITELNVAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISG 309

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           + ++G  +++L++F  MV+ G +P + T+V+VL+ C+H+ +V +GL+LF+ M   Y +EP
Sbjct: 310 LGLHGYGRQALQIFSEMVEEGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEP 369

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            ++HY C+VDL  RAG++EEA + ++     +   D  +W +LLSAC+++  +++G    
Sbjct: 370 TMQHYGCMVDLKGRAGLLEEAFQLVQSM--PIKANDV-LWRSLLSACKVHDNLKLGEIAA 426

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
             L  +   + S +++  N+Y  A     A K+R  +   G+ + PG S++EV   V +F
Sbjct: 427 ENLFRLSSHNPSDYLVLSNMYARAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKF 486

Query: 419 LAGDNRHAQAGEIYRVIHS 437
           ++ D  + ++G IY++IH 
Sbjct: 487 VSQDKSYCKSGNIYKMIHQ 505



 Score = 43.1 bits (100), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 17/139 (12%)

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQ--------GLWVHSYAKRYHLEKNVILATAVVDM 207
           E+ +K  E   + ++  C  L    Q        GL++ S+        + +LAT  +  
Sbjct: 25  ELNLKQKEQEYLCLVKKCKSLEEFKQVHVQILKFGLFLDSFCS------SSVLATCALSD 78

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           ++   +   A S+F+ +       +N MI G   N + + ++ L++ M++   +P   T+
Sbjct: 79  WNSMDY---ACSIFQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTY 135

Query: 268 VAVLTTCTHAKMVRDGLNL 286
             VL  C    ++++G+ +
Sbjct: 136 PVVLKACARLAVIQEGMQI 154


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 234/415 (56%), Gaps = 8/415 (1%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  PN+ T   ++ AC  L  L++ G  VH  VV+ G G + FV S+L+  Y+    +  
Sbjct: 174 GERPNSVTVSSILPACTDLKDLKS-GREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQ 232

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER----NAVSWSAIMAAYSR 140
           A+ +FD    RD V+W  ++  Y    + E    +F +M       N  SW+A++    +
Sbjct: 233 AQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQ 292

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               ++ L +  +MQ  G KPN+  + SVL AC +L ++  G  +H Y  R+   +++  
Sbjct: 293 NGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTT 352

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA+V MY+KCG +  +  VF  ++ +D  +WN MI   +M+G+ +++L LF  MV SG 
Sbjct: 353 TTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGV 412

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P   TF  VL+ C+H+++V +GL +F++MS  + VEP  +H++C+VD+L+RAG +EEA 
Sbjct: 413 RPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAY 472

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           +FI++       G    WGALL  CR+Y  +E+G     +L E+   +   +VL  NI  
Sbjct: 473 EFIKKMPIEPTAG---AWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILV 529

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            A    EA++ RKL+ + G+ K PGCS I+V   V  F+ GD  + Q+ EIYR +
Sbjct: 530 SAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFL 584



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 157/375 (41%), Gaps = 72/375 (19%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           EP+      + KAC  L  + N    VH   ++FGF  D                     
Sbjct: 75  EPDKLLLLSVAKACASLRDVMN-AKRVHEDAIRFGFCSD--------------------- 112

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
                     V+    ++D YGK    E AR +FE MP R+ +SW+++ + Y      +E
Sbjct: 113 ----------VLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLRE 162

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            L  FR+M   G +PN   + S+L AC  L  +  G  VH +  R  +  NV +++A+V+
Sbjct: 163 ALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVN 222

Query: 207 MYSKCGHVHSALSVFEGISNKDA-----------------------------------GA 231
           MY+ C  +  A  VF+ +S +D                                     +
Sbjct: 223 MYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYAS 282

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WNA+I G   NG  +K+LE+  RM  SG +P + T  +VL  CT+ + +R G  +   + 
Sbjct: 283 WNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIF 342

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
             +  +  L     +V + A+ G +E + +        +   D   W  ++ A  ++G  
Sbjct: 343 RHWFFQ-DLTTTTALVFMYAKCGDLELSRRVFSM----MTKRDTVSWNTMIIATSMHGNG 397

Query: 352 EVGNRVWRKLAEMGI 366
           E    ++R++ + G+
Sbjct: 398 EEALLLFREMVDSGV 412



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 132/291 (45%), Gaps = 33/291 (11%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESG 165
           Y   GD + AR LF+K+P+ +  +W+ +++A ++     E +  +   +    ++P++  
Sbjct: 21  YSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKLL 80

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           L+SV  ACA L  +     VH  A R+    +V+L  A++DMY KC     A  VFEG+ 
Sbjct: 81  LLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMP 140

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT---------- 275
            +D  +W +M S     G  +++L  F +M  +G +P   T  ++L  CT          
Sbjct: 141 FRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGRE 200

Query: 276 -HAKMVRDGL--NLFENMSAV--YGVEPQLEHYACVVDLLARAGMV------------EE 318
            H  +VR+G+  N+F + + V  Y     +     V D ++R   V            +E
Sbjct: 201 VHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKE 260

Query: 319 AEK----FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            EK    F      G+G   A+ W A++  C   G+ E    V  ++   G
Sbjct: 261 CEKGLSVFGRMMSEGVGLNYAS-WNAVIGGCMQNGRTEKALEVLSRMQNSG 310



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 34/240 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G MQ    + ++     M + GF+PN  T   ++ AC  L  L   G  +H ++ + 
Sbjct: 286 VIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRG-GKQIHGYIFRH 344

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F +D    ++L+  Y+    +  +R +F     RD V+W TM+      G+ E A    
Sbjct: 345 WFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEA---- 400

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L LFR+M + G++PN      VL+ C+H   + 
Sbjct: 401 ---------------------------LLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVD 433

Query: 181 QGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +GL +     R H +E +    + +VD+ S+ G +  A    + +     AGAW A++ G
Sbjct: 434 EGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGG 493


>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 586

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 148/400 (37%), Positives = 235/400 (58%), Gaps = 12/400 (3%)

Query: 21  MLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY-SL 78
           M++  F  PN++ +P ++K+   L    +  + VH H+ K GF     V ++LL  Y S 
Sbjct: 116 MVNRSFPRPNHFIYPLVLKSTPYLSSAFSTPL-VHTHLFKSGFHLYVVVQTALLHSYASS 174

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
           V  +  AR LFD+  +R+VV+WT M+ GY + GD  NA  LFE+MPER+  SW+AI+AA 
Sbjct: 175 VSHITLARQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAAC 234

Query: 139 SRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           ++   F E +SLFR+M  +  ++PNE  LV VL+ACA  G +     +H++A R +L  +
Sbjct: 235 TQNGLFVEAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSSD 294

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V ++ ++VD+Y KCG++  A SVF+  S K   AWN+MI+  A++G +++++ +F+ M+K
Sbjct: 295 VFVSNSLVDLYGKCGNLEEASSVFKMSSKKSLTAWNSMINCFALHGRSEEAIAVFEDMMK 354

Query: 258 SGT---QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
             +   +P   TF+ +L  CTH  +V  G   F+ M   +G+EP++EHY C++DLL RAG
Sbjct: 355 LNSHDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAG 414

Query: 315 MVEEA-EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
             +EA E     KM      D  +WG+LL+AC+ YG +++     + L  +   +     
Sbjct: 415 QFDEALETMSTMKM----EADEAIWGSLLNACKKYGHLDLAEVAVKNLVALNPNNGGYVA 470

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           +  N+Y E G   EA + RK+I      K PG S IE++ 
Sbjct: 471 MMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSQIEIDN 510


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 154/469 (32%), Positives = 245/469 (52%), Gaps = 41/469 (8%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MIR Y+  +    ++  + +M   G +P++YT+P ++KA      L   GM +HA VV+ 
Sbjct: 1097 MIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLW-VGMQIHAAVVRV 1155

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
            G   + FV + L+  Y     +  A  + D+ P RDVV+W ++V G  + G F++A    
Sbjct: 1156 GLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVC 1215

Query: 117  ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
                                             +E+F K+  ++ VSW+ ++A Y   S 
Sbjct: 1216 KEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSM 1275

Query: 144  FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
              E + +F QM++  + P+   + SVL AC  L A+  G  +H Y  R  L+ N++L  A
Sbjct: 1276 PAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENA 1335

Query: 204  VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
            ++DMY+KCG +  A  VF+ +  +D  +W +MIS   MNG  + ++ LF RM   G  P 
Sbjct: 1336 LIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPD 1395

Query: 264  ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
               FV+VL+ C+HA ++ +G   F+ M+    + P++EH+ C+VDLL RAG V+EA  FI
Sbjct: 1396 SIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFI 1455

Query: 324  EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
            ++        +  VWGALLSACR+Y  + +G     +L ++       +VL  NIY +AG
Sbjct: 1456 KQMP---MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAG 1512

Query: 384  WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
               +   VR ++   G+KK PG S  E++  V  FLAGD  H Q+ +IY
Sbjct: 1513 RWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIY 1561



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 89/175 (50%)

Query: 103  MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
            ++  Y   G+  + R +F+++P++N V ++ ++ +Y     + + L +F+ M   G+ P+
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 163  ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
                  VL A +    +  G+ +H+   R  L+ NV +   ++ MY KCG +  A  V +
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 223  GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
             +  +D  +WN++++G A NG    +LE+   M   G +P   T  ++L   T+ 
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNT 1240



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 27/186 (14%)

Query: 192  YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
            + L  N  L   ++  Y+ CG   S   +F+ I  K+   +N MI     N     +L +
Sbjct: 1054 HDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLV 1113

Query: 252  FDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQL 300
            F  M   G  P   T+  VL   +           HA +VR GL+L  N+    G     
Sbjct: 1114 FKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDL--NVFVGNG----- 1166

Query: 301  EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                 ++ +  + G + EA + ++Z    +   D   W +L++ C   G+ +    V ++
Sbjct: 1167 -----LISMYGKCGCLVEACRVLDZ----MPCRDVVSWNSLVAGCARNGQFDDALEVCKE 1217

Query: 361  LAEMGI 366
            +  +G+
Sbjct: 1218 MELLGL 1223


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 156/425 (36%), Positives = 235/425 (55%), Gaps = 9/425 (2%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D+ F P  + F PL K+      L          ++  GF +  FV +SL+  Y     +
Sbjct: 152 DLPFLP--FAFSPLAKSAAAARSLHAAASAHAVSLLLGGFDKHRFVENSLISAYVACGDV 209

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           G AR +FD+   +DV++WT++V  Y ++ D  +A E+F   P ++ V+W+A++  Y++ +
Sbjct: 210 GAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAMVTGYAQNA 269

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
              + L  F QM   GM  +E  L   ++ACA LGA+ +  WV   A+R  L +NV++ +
Sbjct: 270 MPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGLGRNVVVGS 329

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQ 261
            +VDMY+KCG +  A  VFEG+ +K+   +++MI G+A +G A   + LF+ MV ++  +
Sbjct: 330 GLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVE 389

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   TF+ VLT C+HA MV++G   F  M   YG+ P  +HYAC+VDLLAR+G+V EA  
Sbjct: 390 PNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALD 449

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            ++       GG   VWGALL ACRI+G  EV       L  +       +VL  N    
Sbjct: 450 LVKSMTVEPHGG---VWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLSNTLAS 506

Query: 382 AG-WDMEANKVRKLISETGMKKKPGCSVIE-VNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           AG WD E +K+RKL+   G+KK P  S  E  +G V +F AGDN H    EI + +    
Sbjct: 507 AGEWD-EVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHEIKKRLLELR 565

Query: 440 KMSNL 444
           +  NL
Sbjct: 566 EKLNL 570



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 117/265 (44%), Gaps = 38/265 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q   P  ++  +  M   G   +  +    I AC  LG ++    +V     + 
Sbjct: 261 MVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKR-AAWVQEIAERN 319

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G +  V S L++ Y+    +  AR +F+   D++V T+++M+ G              
Sbjct: 320 GLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVG-------------- 365

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
                         +A++ R +D   V++LF  M +   ++PN    + VLTAC+H G +
Sbjct: 366 --------------LASHGRAND---VIALFNDMVRRADVEPNHVTFIGVLTACSHAGMV 408

Query: 180 TQGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G +  +  K RY +  +      +VD+ ++ G V  AL + + ++     G W A++ 
Sbjct: 409 KEGRYYFAQMKDRYGILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLG 468

Query: 238 GVAMNGD---AKKSLELFDRMVKSG 259
              ++G+   AK + E   R+   G
Sbjct: 469 ACRIHGNTEVAKIAAEHLFRLEPEG 493


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 246/445 (55%), Gaps = 31/445 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q      ++  +  M+  G  PN  T   ++ AC  LG     G  +HA+ +K 
Sbjct: 379 VIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ-GTEIHAYSLK- 436

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                    + LL   +L +  G          D D++ +  ++D Y K   F+ AR +F
Sbjct: 437 ---------NCLL---TLDNDFG--------GEDEDLMVYNALIDMYSKCRSFKAARSIF 476

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHL 176
           + +P  ERN V+W+ ++  +++  D  + L LF +M  +  G+ PN   +  +L ACAHL
Sbjct: 477 DDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHL 536

Query: 177 GAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            AI  G  +H+Y  R+H  ++    +A  ++DMYSKCG V +A  VF+ +S K A +W +
Sbjct: 537 AAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTS 596

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M++G  M+G   ++L++FD+M K+G  P + TF+ VL  C+H  MV  GL+ F++MSA Y
Sbjct: 597 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADY 656

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+ P+ EHYAC +DLLAR+G +++A + +++         A VW ALLSACR++  +E+ 
Sbjct: 657 GLTPRAEHYACAIDLLARSGRLDKAWRTVKDMP---MEPTAVVWVALLSACRVHSNVELA 713

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL EM   +  ++ L  NIY  AG   +  ++R L+ ++G+KK+PGCS ++    
Sbjct: 714 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 773

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
              F  GD  H  + +IY ++ S +
Sbjct: 774 TASFFVGDRSHPLSPQIYALLESLI 798



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 171/332 (51%), Gaps = 23/332 (6%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VH + ++ G   D FV ++L++ Y+    M  A  +F+    +DVV+W  MV GY + G+
Sbjct: 294 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 353

Query: 113 FENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           FE A ELF+ M + N     V+W+A++A YS+     E L+LFRQM   G  PN   ++S
Sbjct: 354 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 413

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHL----------EKNVILATAVVDMYSKCGHVHSAL 218
           VL+ACA LGA +QG  +H+Y+ +  L          ++++++  A++DMYSKC    +A 
Sbjct: 414 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 473

Query: 219 SVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTTC 274
           S+F+ I    ++   W  MI G A  GD+  +L+LF  M+    G  P   T   +L  C
Sbjct: 474 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 533

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
            H   +R G  +   +   +  E      A C++D+ ++ G V+ A    +     +   
Sbjct: 534 AHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS----MSQK 589

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            A  W ++++   ++G+      ++ K+ + G
Sbjct: 590 SAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 621



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 29/293 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +++      ++     ML  G  P+++T P ++KAC  L P    G   H  +   
Sbjct: 133 LIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGEL-PSYRCGSAFHGLICCN 191

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENAR 117
           GF  + F+ ++L+  YS    +  A  +FD+   R   DV++W ++V  + K  +   A 
Sbjct: 192 GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTAL 251

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF KM                         +L    +    + +   +V++L AC  L 
Sbjct: 252 DLFSKM-------------------------TLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ Q   VH  A R     +V +  A++D Y+KCG + +A+ VF  +  KD  +WNAM++
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           G + +G+ + + ELF  M K        T+ AV+   +      + LNLF  M
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 148/358 (41%), Gaps = 28/358 (7%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  Y   G  + A  + E++    AV W+ ++  + +       +++  +M   G +
Sbjct: 100 TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 159

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   L  VL AC  L +   G   H        E NV +  A+V MYS+CG +  A  +
Sbjct: 160 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 219

Query: 221 FEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTE-----TTFVAVL 271
           F+ I+ +   D  +WN+++S    + +A  +L+LF +M +    +PT       + V +L
Sbjct: 220 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
             C   K V     +  N +   G  P +     ++D  A+ G++E A K        + 
Sbjct: 280 PACGSLKAVPQTKEVHGN-AIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM----ME 334

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEA-N 389
             D   W A+++     G  E    +++ + +  I  D  T       Y + G   EA N
Sbjct: 335 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 394

Query: 390 KVRKLISETGMKKKPGC----SVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443
             R++I    +   P C    SV+     +  F  G   HA     Y + +  L + N
Sbjct: 395 LFRQMIFSGSL---PNCVTIISVLSACASLGAFSQGTEIHA-----YSLKNCLLTLDN 444



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L T VV  Y  CG    AL V E ++   A  WN +I      G    ++ +  RM+++G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           T+P   T   VL  C      R G + F  +    G E  +     +V + +R G +EEA
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 320 EKFIEEKMGGLGGGDANVWGALLSA 344
               +E +   G  D   W +++SA
Sbjct: 217 SMIFDE-ITQRGIDDVISWNSIVSA 240


>gi|224058579|ref|XP_002299552.1| predicted protein [Populus trichocarpa]
 gi|222846810|gb|EEE84357.1| predicted protein [Populus trichocarpa]
          Length = 505

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 238/419 (56%), Gaps = 10/419 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIRGY Q   P+ ++  +  ML +     N  TFP ++KAC  +  +E  G  VH  V K
Sbjct: 96  MIRGYAQREKPENALSLFYSMLCNANSGQNKLTFPFVLKACSQVRAIEE-GKQVHGLVFK 154

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G  ED FV +SL+  YS    +G A  +F+K  D DVV+W +M+ G   +G  E  +++
Sbjct: 155 HGLSEDLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVVSWNSMISGLVDLGFVEEGKQM 214

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++M +R+ V+W+ ++  Y +     E   LF QM+          +VSVLTAC++LGA+
Sbjct: 215 FDRMSKRSLVTWNCLIDGYVKAGLLMEARELFDQMRFT--------MVSVLTACSYLGAL 266

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG W+ ++ ++  ++ N +L TA+V+M++KCG +  ALSVF+ I  +D GAWN++I  +
Sbjct: 267 EQGEWMQAHIEKNGIDVNSVLGTALVEMFAKCGSIERALSVFKSIEERDVGAWNSIIHKL 326

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G  +++  +F  M++S T      F+ +L+ C H  +V +G   F+ MS  YG+ P+
Sbjct: 327 AAHGHGQEAFAIFSDMLRSNTLLDGIIFLGLLSVCRHLGLVDEGKRFFQLMSEEYGLVPK 386

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL  A ++EEA   I+            +WGALL        I +G    +
Sbjct: 387 VEHYGCMVDLLCHADLLEEARDLIDSSHASQMKSSVPMWGALLGVSCQLKNIVMGEYAAK 446

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L ++   D + + +  N+Y  AG   +A +VR  + + G++K PG S +E++G+V +F
Sbjct: 447 HLLQLDPFDGNCYTVLSNLYSAAGLYEKAIEVRNEMKKQGLEKIPGSSSMEIDGLVLDF 505



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 153/370 (41%), Gaps = 93/370 (25%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVH--KMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HA + K GF ++P  ++ LL + S+     +  A+++F+   + +   +  M+ GY + 
Sbjct: 44  LHARLTKLGFIKNPLALTRLLCYSSISQYANINYAQSIFNFDKNPNTFAYNVMIRGYAQR 103

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
              ENA  LF          +S +  A S                      N+     VL
Sbjct: 104 EKPENALSLF----------YSMLCNANS--------------------GQNKLTFPFVL 133

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC+ + AI +G  VH    ++ L +++ +  +++ MYS CG +  A  VF  I + D  
Sbjct: 134 KACSQVRAIEEGKQVHGLVFKHGLSEDLFVQNSLISMYSSCGLIGFACQVFNKIDDPDVV 193

Query: 231 AWNAMISGVAMNGDAKKSLELFDRM---------------VKSGT--------QPTETTF 267
           +WN+MISG+   G  ++  ++FDRM               VK+G              T 
Sbjct: 194 SWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLIDGYVKAGLLMEARELFDQMRFTM 253

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSA---VYGVEPQLEHYACVVDLLARAGMVEEAE---K 321
           V+VLT C++   +  G    E M A     G++        +V++ A+ G +E A    K
Sbjct: 254 VSVLTACSYLGALEQG----EWMQAHIEKNGIDVNSVLGTALVEMFAKCGSIERALSVFK 309

Query: 322 FIEE-----------KMGGLGGG-----------------DANVWGALLSACRIYGKIEV 353
            IEE           K+   G G                 D  ++  LLS CR  G ++ 
Sbjct: 310 SIEERDVGAWNSIIHKLAAHGHGQEAFAIFSDMLRSNTLLDGIIFLGLLSVCRHLGLVDE 369

Query: 354 GNRVWRKLAE 363
           G R ++ ++E
Sbjct: 370 GKRFFQLMSE 379



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 51/260 (19%), Positives = 111/260 (42%), Gaps = 18/260 (6%)

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV--DMYSK 210
           Q Q   +K      +S+L  C       Q   +H+   +    KN +  T ++     S+
Sbjct: 19  QFQSFSLK----SCLSLLEICKFTTEFAQ---LHARLTKLGFIKNPLALTRLLCYSSISQ 71

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVA 269
             +++ A S+F    N +  A+N MI G A     + +L LF  M+  + +   + TF  
Sbjct: 72  YANINYAQSIFNFDKNPNTFAYNVMIRGYAQREKPENALSLFYSMLCNANSGQNKLTFPF 131

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           VL  C+  + + +G  +   +   +G+   L     ++ + +  G++     F  +    
Sbjct: 132 VLKACSQVRAIEEGKQV-HGLVFKHGLSEDLFVQNSLISMYSSCGLI----GFACQVFNK 186

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN 389
           +   D   W +++S     G +E G +++ ++++  +  ++  +   + Y +AG  MEA 
Sbjct: 187 IDDPDVVSWNSMISGLVDLGFVEEGKQMFDRMSKRSLVTWNCLI---DGYVKAGLLMEAR 243

Query: 390 KVRKLISETGMKKKPGCSVI 409
           ++   +  T +     CS +
Sbjct: 244 ELFDQMRFTMVSVLTACSYL 263


>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
 gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
 gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 493

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 237/416 (56%), Gaps = 13/416 (3%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVVSSLLEFYSLVHKMGTAR 86
           P++ TFP  +               VHA  ++ G    D  V +SL+  Y+     G AR
Sbjct: 60  PSHLTFP-FLARAAARLATPRLARAVHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLAR 118

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD+ P  + V+W  ++DGY K  D   AR +F +MP+R+ VSWSA++    +  + +E
Sbjct: 119 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHRE 178

Query: 147 VLSLFRQMQEV-----GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
            L++F  M+       G++ N+  +VSVL ACAHLG + +G  +H Y + +    N+ LA
Sbjct: 179 ALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLA 238

Query: 202 TAVVDMYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           T++VDMY+KCG +  AL VF+ +   N D   WNA+I G+A++G +++SL++F +M  +G
Sbjct: 239 TSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAG 298

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             P E T++++L+ C H  +V +  + F ++ A  G+ P +EHYAC+VD+L RAG +EEA
Sbjct: 299 VVPDEITYLSLLSACVHGGLVDEAWSFFRSLEA-QGLRPHVEHYACLVDVLGRAGRLEEA 357

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
              ++           +V GALL+AC ++G +E+G  V R+L  +       ++   NIY
Sbjct: 358 YGVVKSMP---MKPSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIY 414

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
             A    EA K RK++ E G+KK PG S I+V   +  F+A D  H  + EIY ++
Sbjct: 415 AVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGICRFIAQDKTHPGSAEIYALL 470


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 141/377 (37%), Positives = 218/377 (57%), Gaps = 8/377 (2%)

Query: 65  DPFVVS--SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK 122
           +P  VS  ++L  ++   K+  AR LFD+ P R+VV W  M+  Y +    + A  LF +
Sbjct: 117 NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFME 176

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MPE+N++SW+ ++  Y R+    E   L  QM     KP++S     L++CAHL A+  G
Sbjct: 177 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVG 235

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             +H    +     ++ ++ A++ MY+KCG + SA  +F+ I + D  +WN++I+  A+N
Sbjct: 236 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 295

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G+ +++L+LF +M   G  P E TFV +L+ C+H  ++  GL LF+ M   Y +EP  EH
Sbjct: 296 GNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEH 355

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
           YAC+VDLL RAG +EEA + +    G     +A +WGALL ACRI+G +E+      KL 
Sbjct: 356 YACMVDLLGRAGRLEEAFQLVR---GMKINANAGIWGALLGACRIHGNLELAKFAAEKLL 412

Query: 363 EMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
           E      S +VL  N+  EAG WD E  +VR+L+ E G +K+PG S IE+   V  FL+ 
Sbjct: 413 EFEPHKTSNYVLLSNMQAEAGRWD-EVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSE 471

Query: 422 DNRHAQAGEIYRVIHSF 438
           D  H +A E+  ++ S 
Sbjct: 472 DPAHPRAVELCHILRSL 488



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 150/322 (46%), Gaps = 30/322 (9%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           +P   ++++  Y+   +   AR LFD  P +D+V+W +M+ GY + G+     + FE+M 
Sbjct: 26  NPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA 85

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           ER+ VSW+ ++  +  + D       F ++      PN    V++L   A  G I +   
Sbjct: 86  ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAE--- 138

Query: 185 VHSYAKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
               A+R   +   +NV+   A++  Y +  HV  A+S+F  +  K++ +W  +I+G   
Sbjct: 139 ----ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVR 194

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
            G   ++ +L ++M     +P ++TF   L++C H   ++ G  L + +    G    L 
Sbjct: 195 MGKLDEARQLLNQM-PYRNKPDQSTFACGLSSCAHLAALQVGKQLHQ-LVMKSGYATDLF 252

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS----------ACRIYGKI 351
               ++ + A+ G +  AE   ++    +   D   W +L++          A +++ K+
Sbjct: 253 VSNALITMYAKCGSISSAELLFKD----IDHFDVVSWNSLIAAYALNGNGREALKLFHKM 308

Query: 352 EVGNRVWRKLAEMGITDFSTHV 373
           EV      ++  +GI    +HV
Sbjct: 309 EVEGVAPDEVTFVGILSACSHV 330



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 103/228 (45%), Gaps = 34/228 (14%)

Query: 19  LDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
           L+ +    +P+  TF   + +C  L  L+  G  +H  V+K G+  D FV ++L+  Y+ 
Sbjct: 205 LNQMPYRNKPDQSTFACGLSSCAHLAALQ-VGKQLHQLVMKSGYATDLFVSNALITMYAK 263

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
              + +A  LF      DVV+W +++  Y   G                           
Sbjct: 264 CGSISSAELLFKDIDHFDVVSWNSLIAAYALNG--------------------------- 296

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV-HSYAKRYHLEKN 197
               + +E L LF +M+  G+ P+E   V +L+AC+H+G I QGL +     + Y++E  
Sbjct: 297 ----NGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPL 352

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGD 244
                 +VD+  + G +  A  +  G+  N +AG W A++    ++G+
Sbjct: 353 AEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGN 400


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/436 (34%), Positives = 254/436 (58%), Gaps = 10/436 (2%)

Query: 1   MIRGY-MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRGY ++  F + ++  Y  M      P ++TF  L+KAC  +G L N G   HA   +
Sbjct: 121 VIRGYTIEGKFDE-AIAMYGCMRKEEITPVSFTFSALLKACGSMGDL-NLGRQFHAQTFR 178

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                  +V +++++ Y     +  AR +FD+ P+RDV++WT ++  Y ++G+ E+A +L
Sbjct: 179 LRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADL 238

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE +P ++ V+W+A++  +++ +  +E L  F +M++ G++ +E  +   ++ACA LGA 
Sbjct: 239 FESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS 298

Query: 180 TQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
                    A++  Y    +V++ +A++DMYSKCG+V  A++VF  ++NK+  ++++MI 
Sbjct: 299 KYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMIL 358

Query: 238 GVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           G+A +G A+++L+LF  MV ++  +P   TFV  LT C+H+ +V  G  +F +M   +GV
Sbjct: 359 GLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGV 418

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           EP  +HY C+VDLL RAG ++EA + I+       GG   VWGALL ACRI+   ++   
Sbjct: 419 EPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGG---VWGALLGACRIHNNPDIAEI 475

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS-VIEVNGVV 415
               L E+       ++L  N+Y  AG       VRKLI E G+KK P  S V++ NG +
Sbjct: 476 AAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQM 535

Query: 416 EEFLAGDNRHAQAGEI 431
            +F  G+  H  + +I
Sbjct: 536 HKFFPGNLNHPMSKKI 551



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 67/301 (22%), Positives = 122/301 (40%), Gaps = 65/301 (21%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +H HV++ G  +  ++++ L+   +   K+G      D  P                   
Sbjct: 69  IHGHVLRKGLDQSCYILTKLIRTLT---KLGVP---MDPYP------------------- 103

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
               R + E +  RN   W+A++  Y+    F E ++++  M++  + P      ++L A
Sbjct: 104 ----RRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKA 159

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV------------------ 214
           C  +G +  G   H+   R      V +   ++DMY KCG +                  
Sbjct: 160 CGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISW 219

Query: 215 -------------HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                         SA  +FE +  KD  AW AM++G A N   +++LE FDRM KSG +
Sbjct: 220 TELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIR 279

Query: 262 PTETTFVAVLTTCTH---AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
             E T    ++ C     +K     + + +   + Y     +   + ++D+ ++ G VEE
Sbjct: 280 ADEVTVAGYISACAQLGASKYADRAVQIAQK--SGYSPSDHVVIGSALIDMYSKCGNVEE 337

Query: 319 A 319
           A
Sbjct: 338 A 338


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 246/445 (55%), Gaps = 31/445 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q      ++  +  M+  G  PN  T   ++ AC  LG     G  +HA+ +K 
Sbjct: 372 VIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQ-GTEIHAYSLK- 429

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                    + LL   +L +  G          D D++ +  ++D Y K   F+ AR +F
Sbjct: 430 ---------NCLL---TLDNDFG--------GEDEDLMVYNALIDMYSKCRSFKAARSIF 469

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHL 176
           + +P  ERN V+W+ ++  +++  D  + L LF +M  +  G+ PN   +  +L ACAHL
Sbjct: 470 DDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHL 529

Query: 177 GAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            AI  G  +H+Y  R+H  ++    +A  ++DMYSKCG V +A  VF+ +S K A +W +
Sbjct: 530 AAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTS 589

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M++G  M+G   ++L++FD+M K+G  P + TF+ VL  C+H  MV  GL+ F++MSA Y
Sbjct: 590 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADY 649

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+ P+ EHYAC +DLLAR+G +++A + +++         A VW ALLSACR++  +E+ 
Sbjct: 650 GLTPRAEHYACAIDLLARSGRLDKAWRTVKDMP---MEPTAVVWVALLSACRVHSNVELA 706

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL EM   +  ++ L  NIY  AG   +  ++R L+ ++G+KK+PGCS ++    
Sbjct: 707 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 766

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
              F  GD  H  + +IY ++ S +
Sbjct: 767 TASFFVGDRSHPLSPQIYALLESLI 791



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 171/332 (51%), Gaps = 23/332 (6%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VH + ++ G   D FV ++L++ Y+    M  A  +F+    +DVV+W  MV GY + G+
Sbjct: 287 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 346

Query: 113 FENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           FE A ELF+ M + N     V+W+A++A YS+     E L+LFRQM   G  PN   ++S
Sbjct: 347 FEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIIS 406

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHL----------EKNVILATAVVDMYSKCGHVHSAL 218
           VL+ACA LGA +QG  +H+Y+ +  L          ++++++  A++DMYSKC    +A 
Sbjct: 407 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 466

Query: 219 SVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTTC 274
           S+F+ I    ++   W  MI G A  GD+  +L+LF  M+    G  P   T   +L  C
Sbjct: 467 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 526

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
            H   +R G  +   +   +  E      A C++D+ ++ G V+ A    +     +   
Sbjct: 527 AHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS----MSQK 582

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            A  W ++++   ++G+      ++ K+ + G
Sbjct: 583 SAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 614



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 134/293 (45%), Gaps = 29/293 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +++      ++     ML  G  P+++T P ++KAC  L P    G   H  +   
Sbjct: 126 LIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGEL-PSYRCGSAFHGLICCN 184

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENAR 117
           GF  + F+ ++L+  YS    +  A  +FD+   R   DV++W ++V  + K  +   A 
Sbjct: 185 GFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTAL 244

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF KM                         +L    +    + +   +V++L AC  L 
Sbjct: 245 DLFSKM-------------------------TLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ Q   VH  A R     +V +  A++D Y+KCG + +A+ VF  +  KD  +WNAM++
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           G + +G+ + + ELF  M K        T+ AV+   +      + LNLF  M
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 148/358 (41%), Gaps = 28/358 (7%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  Y   G  + A  + E++    AV W+ ++  + +       +++  +M   G +
Sbjct: 93  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 152

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   L  VL AC  L +   G   H        E NV +  A+V MYS+CG +  A  +
Sbjct: 153 PDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 212

Query: 221 FEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTE-----TTFVAVL 271
           F+ I+ +   D  +WN+++S    + +A  +L+LF +M +    +PT       + V +L
Sbjct: 213 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
             C   K V     +  N +   G  P +     ++D  A+ G++E A K        + 
Sbjct: 273 PACGSLKAVPQTKEVHGN-AIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNM----ME 327

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEA-N 389
             D   W A+++     G  E    +++ + +  I  D  T       Y + G   EA N
Sbjct: 328 FKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALN 387

Query: 390 KVRKLISETGMKKKPGC----SVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443
             R++I    +   P C    SV+     +  F  G   HA     Y + +  L + N
Sbjct: 388 LFRQMIFSGSL---PNCVTIISVLSACASLGAFSQGTEIHA-----YSLKNCLLTLDN 437



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 2/145 (1%)

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L T VV  Y  CG    AL V E ++   A  WN +I      G    ++ +  RM+++G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           T+P   T   VL  C      R G + F  +    G E  +     +V + +R G +EEA
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 320 EKFIEEKMGGLGGGDANVWGALLSA 344
               +E +   G  D   W +++SA
Sbjct: 210 SMIFDE-ITQRGIDDVISWNSIVSA 233


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 234/432 (54%), Gaps = 35/432 (8%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MIRG+        S+  Y  M++ G +P+ + FP  +K+C  L  L+  G  +H H+V  
Sbjct: 789  MIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQR-GKVIHQHLVCC 847

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G   D FV ++L                               VD Y K GD E AR +F
Sbjct: 848  GCSNDLFVDAAL-------------------------------VDMYAKCGDIEAARLVF 876

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +KM  R+ VSW+++++ Y+      E L  F  M+  G+ PN   ++SVL AC +LGA+ 
Sbjct: 877  DKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALR 936

Query: 181  QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            +G W HSY  +   E ++++ATA++DMYSKCG +  A  +F+  + KD   W+AMI+   
Sbjct: 937  KGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYG 996

Query: 241  MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            ++G  +K+++LFD+MVK+G +P+  TF  VL+ C+H+ ++ +G   F+ M+  + +  +L
Sbjct: 997  IHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKL 1056

Query: 301  EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
             +YAC+VDLL RAG + EA   IE         DA++WG+LL ACRI+  +++  ++   
Sbjct: 1057 SNYACMVDLLGRAGQLSEAVDLIENMP---VEPDASIWGSLLGACRIHNNLDLAEKIADH 1113

Query: 361  LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
            L  +       HVL  NIY       E  KVRK+++  G  K  G S++E +  V +F  
Sbjct: 1114 LFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGV 1173

Query: 421  GDNRHAQAGEIY 432
            GD  H Q  ++Y
Sbjct: 1174 GDRSHPQWEKLY 1185



 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 139/440 (31%), Positives = 229/440 (52%), Gaps = 38/440 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y        ++  + +M++  FEPN+ T    ++AC +   LE  G  +H   V  
Sbjct: 278 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEE-GKKIHKIAVWK 336

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F VS                              T ++D Y K    + A +LF
Sbjct: 337 GFELD-FSVS------------------------------TALIDMYMKCSCPDEAVDLF 365

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P+++ VSW A+++ Y++     + + +FR M   G++P+   +V +L A + LG   
Sbjct: 366 QRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQ 425

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           Q L +H Y  R     NV +  +++++YSKCG +  A+ +F+G+  +D   W++MI+   
Sbjct: 426 QALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYG 485

Query: 241 MNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           ++G   ++LE+FD+MVK+ T +P   TF+++L+ C+HA +V +GL +F+ M   Y + P 
Sbjct: 486 IHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPD 545

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EH+  +VDLL R G + +A   I       G    +VWGALL ACRI+  IE+G    +
Sbjct: 546 SEHFGIMVDLLGRIGQLGKAMDIINRMPIPAG---PHVWGALLGACRIHHNIEMGEAAAK 602

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L  +  +    ++L  NIY   G WD  A ++R  I E G+KK  G S++EV G V  F
Sbjct: 603 NLFWLDPSHAGYYILLSNIYAVDGKWDNVA-ELRTRIKERGLKKMFGQSMVEVRGGVHSF 661

Query: 419 LAGDNRHAQAGEIYRVIHSF 438
           LA D  H  + +IY ++   
Sbjct: 662 LASDRFHPDSQKIYELLRKL 681



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 152/350 (43%), Gaps = 37/350 (10%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFY 76
           +L +   G  P+N+T P  +KAC  L  LE  G  +H    K    G D FV S+L+E Y
Sbjct: 91  HLMICTAGEAPDNFTIPIALKACAGLRMLE-LGKVIHGFAKKNDEIGSDMFVGSALVELY 149

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           S   +MG A  +F++    D V WT+MV GY +  D E A  LF +M   + V    +  
Sbjct: 150 SKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVT- 208

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
                                        LVSV++ACA L  +  G  VH    R   + 
Sbjct: 209 -----------------------------LVSVVSACAQLLNVKAGSCVHGLVIRREFDG 239

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           ++ L  +++++Y+K G    A ++F  +  KD  +W+ MI+  A N  A ++L LF  M+
Sbjct: 240 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMI 299

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
           +   +P   T V+ L  C  ++ + +G  +   ++   G E        ++D+  +    
Sbjct: 300 EKRFEPNSVTVVSALQACAVSRNLEEGKKI-HKIAVWKGFELDFSVSTALIDMYMKCSCP 358

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +EA    +     L   D   W ALLS     G       V+R +   GI
Sbjct: 359 DEAVDLFQR----LPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGI 404



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 139/313 (44%), Gaps = 36/313 (11%)

Query: 54   HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
            HA +  +G   D  +++     Y   +++  A  +F+  P+     W  M+ G+   G F
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 114  ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             ++ EL+ KM E+                               G+KP++      L +C
Sbjct: 800  LSSLELYSKMMEK-------------------------------GLKPDKFAFPFALKSC 828

Query: 174  AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            A L  + +G  +H +        ++ +  A+VDMY+KCG + +A  VF+ ++ +D  +W 
Sbjct: 829  AGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWT 888

Query: 234  AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            +MISG A NG   ++L  FD M  SG  P   + ++VL  C +   +R G   F +    
Sbjct: 889  SMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKG-EWFHSYVIQ 947

Query: 294  YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
             G E  +     ++D+ ++ G ++ A    +E      G D   W A++++  I+G    
Sbjct: 948  TGFEFDILVATAIMDMYSKCGSLDLARCLFDET----AGKDLVCWSAMIASYGIHGHGRK 1003

Query: 354  GNRVWRKLAEMGI 366
               ++ ++ + G+
Sbjct: 1004 AIDLFDQMVKAGV 1016



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 124/278 (44%), Gaps = 23/278 (8%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM- 154
           D    T +   Y K    + AR++F++ P  N   W++ + +Y R   ++E L LF  M 
Sbjct: 35  DTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMI 94

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLEKNVILATAVVDMYSKCGH 213
              G  P+   +   L ACA L  +  G  +H +AK+   +  ++ + +A+V++YSKCG 
Sbjct: 95  CTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQ 154

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE-TTFVAVLT 272
           +  AL VFE     D   W +M++G   N D +++L LF +MV       +  T V+V++
Sbjct: 155 MGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVS 214

Query: 273 TCTHAKMVRDGLNLFENMSAVYGV------EPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
            C     V+ G       S V+G+      +  L     +++L A+ G     EK     
Sbjct: 215 ACAQLLNVKAG-------SCVHGLVIRREFDGDLPLVNSLLNLYAKTG----CEKIAANL 263

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
              +   D   W  ++ AC  Y   E  N       EM
Sbjct: 264 FSKMPEKDVISWSTMI-AC--YANNEAANEALNLFHEM 298


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  268 bits (684), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 230/414 (55%), Gaps = 39/414 (9%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  GF PN YTF  ++++C  L  ++  G  VHA +VK     + FV            
Sbjct: 282 MLAEGFNPNMYTFISILRSCSSLSDVD-LGKQVHAQIVKNSLDGNDFV------------ 328

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
             GTA                 +VD Y K    E+A  +F ++ +R+  +W+ I+A Y++
Sbjct: 329 --GTA-----------------LVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               ++ +  F QMQ  G+KPNE  L S L+ C+ +  +  G  +HS A +     ++ +
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 429

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           A+A+VDMY+KCG V  A  VF+G+ ++D  +WN +I G + +G   K+L+ F+ M+  GT
Sbjct: 430 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 489

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P E TF+ VL+ C+H  ++ +G   F ++S +YG+ P +EHYAC+VD+L RAG   E E
Sbjct: 490 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 549

Query: 321 KFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
            FIEE K+      +  +W  +L AC+++G IE G R   KL E+     S ++L  N++
Sbjct: 550 SFIEEMKL----TSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMF 605

Query: 380 KEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              G WD +   VR L+S  G+KK+PGCS +EVNG V  FL+ D  H +  EI+
Sbjct: 606 AAKGMWD-DVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIH 658



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 38/332 (11%)

Query: 19  LDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
           + +L  GFEPN YTF  ++K C   G L N G  +H  V+K G   D  + +SL+  Y+ 
Sbjct: 180 IQLLVEGFEPNMYTFISILKTCASKGDL-NEGKAIHGQVIKSGINPDSHLWNSLVNVYAK 238

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
                 A  +F + P+RDVV+WT ++ G+   G                           
Sbjct: 239 CGSANYACKVFGEIPERDVVSWTALITGFVAEG--------------------------- 271

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV 198
                +   L +F QM   G  PN    +S+L +C+ L  +  G  VH+   +  L+ N 
Sbjct: 272 -----YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGND 326

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            + TA+VDMY+K   +  A ++F  +  +D  AW  +++G A +G  +K+++ F +M + 
Sbjct: 327 FVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQRE 386

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G +P E T  + L+ C+    +  G  L  +M+   G    +   + +VD+ A+ G VE+
Sbjct: 387 GVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDMFVASALVDMYAKCGCVED 445

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           AE   +    GL   D   W  ++     +G+
Sbjct: 446 AEVVFD----GLVSRDTVSWNTIICGYSQHGQ 473



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 152/369 (41%), Gaps = 69/369 (18%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           N + F  LI A   LG   ++G  +HA V K+GF                          
Sbjct: 89  NQFIFASLISAAASLGD-NHYGESIHACVCKYGF-------------------------- 121

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
                + D++     V  Y K    EN  + F+ M   N  S + +++ +       +  
Sbjct: 122 -----ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGP 176

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
            +  Q+   G +PN    +S+L  CA  G + +G  +H    +  +  +  L  ++V++Y
Sbjct: 177 RILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVY 236

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG  + A  VF  I  +D  +W A+I+G    G     L +F++M+  G  P   TF+
Sbjct: 237 AKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFI 295

Query: 269 AVLTTCT-----------HAKMVRDGLN-----------------LFENMSAVYG--VEP 298
           ++L +C+           HA++V++ L+                   E+   ++   ++ 
Sbjct: 296 SILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKR 355

Query: 299 QLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
            L  +  +V   A+ G  E+A K FI+ +  G+   +  +  + LS C     ++ G   
Sbjct: 356 DLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTL-ASSLSGCSRIATLDSG--- 411

Query: 358 WRKLAEMGI 366
            R+L  M I
Sbjct: 412 -RQLHSMAI 419



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 117/251 (46%), Gaps = 7/251 (2%)

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           PD  +  W+++V+ Y K    + AR++ E+MP ++   W+  +++ +     +E + LF 
Sbjct: 22  PDSHL--WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFY 79

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
            M+   ++ N+    S+++A A LG    G  +H+   +Y  E +++++ A V MY K  
Sbjct: 80  LMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQ 139

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            V +    F+ +  ++  + N ++SG        +   +  +++  G +P   TF+++L 
Sbjct: 140 SVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILK 199

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
           TC     + +G           G+ P    +  +V++ A+ G    A K      G +  
Sbjct: 200 TCASKGDLNEG-KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV----FGEIPE 254

Query: 333 GDANVWGALLS 343
            D   W AL++
Sbjct: 255 RDVVSWTALIT 265



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 38/259 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q    + +V C++ M   G +PN +T    +  C  +  L++ G  +H+  +K 
Sbjct: 363 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS-GRQLHSMAIKA 421

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV S+L++ Y+    +  A  +FD    RD V+W T++ GY + G    A + F
Sbjct: 422 GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAF 481

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M +   V                               P+E   + VL+AC+H+G I 
Sbjct: 482 EAMLDEGTV-------------------------------PDEVTFIGVLSACSHMGLIE 510

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G    +S +K Y +   +     +VD+  + G  H   S  E +    +   W  ++  
Sbjct: 511 EGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGA 570

Query: 239 VAMNGD----AKKSLELFD 253
             M+G+     + +++LF+
Sbjct: 571 CKMHGNIEFGERAAMKLFE 589


>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
 gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
          Length = 576

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 157/472 (33%), Positives = 251/472 (53%), Gaps = 45/472 (9%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           +  ++ P  S+  +L ML     P+ YT P L+ A     P        HA + K G  +
Sbjct: 90  FFASSRPDTSLRLFLSMLRAELRPDAYTLPFLLLAAARC-PSPAVARSAHAFLEKLGLRD 148

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTT---------------------- 102
               V SL+  YS +    TAR +FD  P RDVV+W +                      
Sbjct: 149 HDHTVHSLITMYSCLGDHLTARRVFDGIPHRDVVSWNSIMKAYERAACRDAGNLVLGKWV 208

Query: 103 ------------------MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                             +V  Y K G+ E AR +F+ +  ++ V+W+A++  Y++    
Sbjct: 209 EEWVRSAGMEVDSLIGSALVGMYEKCGEMEEARRVFDGISNKDVVAWNAMITGYAQNGMS 268

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E ++LF  M+E G++P++  LV VL++CA +GA+  G+ +  YA    L  NV + TA+
Sbjct: 269 NEAIALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVELDGYALHRGLYSNVYVGTAL 328

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPT 263
           VDMY+KCG +  A  VF  +  K+  +WNA+I G+A NG    +++ F+ M  + G QP 
Sbjct: 329 VDMYAKCGDLEKATYVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFELMRNEKGLQPD 388

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + TF+ VL+ C HA ++  G  LF +++ V+ + P++EHY+C+VDLLARAG +E A  FI
Sbjct: 389 DITFIGVLSACVHAGLLEYGRRLFSSLTPVFKIIPKIEHYSCIVDLLARAGHLEAAWDFI 448

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           E+  G +   DA + GALL+ACR     EVG +V  ++ ++  T+   +V+S  IY  + 
Sbjct: 449 EKMPGKV---DAVMLGALLAACRKCKNAEVGEKVINRIMKLEPTNSWNYVVSSKIYATSD 505

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              E+ ++  L+ E G+ K PGCS +EV+G V EF A       A ++Y+++
Sbjct: 506 KMDESARMIGLMRERGVNKTPGCSWVEVHGKVLEFYASTEPQHGAEDMYQLM 557


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 243/435 (55%), Gaps = 8/435 (1%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           Y+   FP+  +  + +M+  G +P+  T   ++ AC  L  L++ G  +H   V+ G  E
Sbjct: 419 YVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKS-GKVIHGFAVRHGMVE 477

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D FV ++LL  Y+    +  A+ +FD  P R+V +W  ++  Y    ++E    +F +M 
Sbjct: 478 DVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMN 537

Query: 125 ----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
               + + ++WS ++    + S  +E + +FR+MQ +G KP+E+ + S+L AC+    + 
Sbjct: 538 RDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLR 597

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y  R+  + ++    A+VDMY+KCG +  + +VF+ +  KD  +WN MI    
Sbjct: 598 MGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANG 657

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G+ K++L LF++M+ S  +P   TF  VL+ C+H+ +V +G+ +F +MS  + VEP+ 
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEA 717

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY CVVD+ +RAG +EEA  FI+          A  W A L+ CR+Y  +E+     +K
Sbjct: 718 EHYTCVVDIYSRAGCLEEAYGFIQRMP---MEPTAIAWKAFLAGCRVYKNVELAKISAKK 774

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+     + +V  +NI   A    EA+K+RKL+ E G+ K PGCS   V   V  F+A
Sbjct: 775 LFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVA 834

Query: 421 GDNRHAQAGEIYRVI 435
           GD  + ++ +IY  +
Sbjct: 835 GDKSNMESDKIYNFL 849



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 176/402 (43%), Gaps = 64/402 (15%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           Y+   FP+  +  + +M+  G +P+  T   ++ AC  L  L++ G  +H   +K G  E
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKS-GKAIHGFALKHGMVE 275

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           + FV ++L+  Y     +  A+A+FD                                MP
Sbjct: 276 NVFVSNALVNLYESCLCVREAQAVFDL-------------------------------MP 304

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            RN ++W+++ + Y      ++ L++FR+M   G+KP+   + S+L AC+ L  +  G  
Sbjct: 305 HRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKT 364

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H +A ++ + ++V + TA+V++Y+ C  V  A +VF+ + +++   WN++ S     G 
Sbjct: 365 IHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGF 424

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            +K L +F  MV +G +P   T +++L  C+  + ++ G  +    +  +G+   +    
Sbjct: 425 PQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSG-KVIHGFAVRHGMVEDVFVCN 483

Query: 305 CVVDLLARAGMVEEAEKFIE----EKMGGLGG---------------------------G 333
            ++ L A+   V EA+   +     ++    G                            
Sbjct: 484 ALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKA 543

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           D   W  ++  C    +IE    ++RK+  MG     T + S
Sbjct: 544 DEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYS 585



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 163/362 (45%), Gaps = 37/362 (10%)

Query: 5   YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
           Y+   FP+  +  +  M     + N  T   ++  C  L  L++ G  +H  VV+ G  E
Sbjct: 116 YVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKS-GKEIHGFVVRHGMVE 174

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D FV S+ + FY+                               K      A+ +F+ MP
Sbjct: 175 DVFVSSAFVNFYA-------------------------------KCLCVREAQTVFDLMP 203

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            R+ V+W+++ + Y      ++ L++FR+M   G+KP+   +  +L+AC+ L  +  G  
Sbjct: 204 HRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKA 263

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H +A ++ + +NV ++ A+V++Y  C  V  A +VF+ + +++   WN++ S     G 
Sbjct: 264 IHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGF 323

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            +K L +F  M  +G +P      ++L  C+  K ++ G  +    +  +G+   +    
Sbjct: 324 PQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTI-HGFAVKHGMVEDVFVCT 382

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            +V+L A    V EA+   +     +   +   W +L S     G  + G  V+R++   
Sbjct: 383 ALVNLYANCLCVREAQTVFDL----MPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLN 438

Query: 365 GI 366
           G+
Sbjct: 439 GV 440



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 99/188 (52%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DV      +  YGK    E AR +F+ +  R+ V+W+++ A Y      ++ L++FR+M 
Sbjct: 74  DVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMG 133

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
              +K N   + S+L  C+ L  +  G  +H +  R+ + ++V +++A V+ Y+KC  V 
Sbjct: 134 LNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVR 193

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A +VF+ + ++D   WN++ S     G  +K L +F  MV  G +P   T   +L+ C+
Sbjct: 194 EAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACS 253

Query: 276 HAKMVRDG 283
             + ++ G
Sbjct: 254 DLQDLKSG 261



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 94/221 (42%), Gaps = 5/221 (2%)

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E + ++   +  G+KP++   ++V  ACA      +    H  A R  +  +V +  A +
Sbjct: 23  EAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFI 82

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
             Y KC  V  A  VF+ +  +D   WN++ +     G  ++ L +F +M  +  +    
Sbjct: 83  HAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPL 142

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T  ++L  C+  + ++ G  +       +G+   +   +  V+  A+   V EA+   + 
Sbjct: 143 TVSSILPGCSDLQDLKSGKEI-HGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDL 201

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
               +   D   W +L S     G  + G  V+R++   G+
Sbjct: 202 ----MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGV 238


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 149/414 (35%), Positives = 230/414 (55%), Gaps = 39/414 (9%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  GF PN YTF  ++++C  L  ++  G  VHA +VK     + FV            
Sbjct: 523 MLAEGFNPNMYTFISILRSCSSLSDVD-LGKQVHAQIVKNSLDGNDFV------------ 569

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
             GTA                 +VD Y K    E+A  +F ++ +R+  +W+ I+A Y++
Sbjct: 570 --GTA-----------------LVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 610

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               ++ +  F QMQ  G+KPNE  L S L+ C+ +  +  G  +HS A +     ++ +
Sbjct: 611 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFV 670

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           A+A+VDMY+KCG V  A  VF+G+ ++D  +WN +I G + +G   K+L+ F+ M+  GT
Sbjct: 671 ASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGT 730

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P E TF+ VL+ C+H  ++ +G   F ++S +YG+ P +EHYAC+VD+L RAG   E E
Sbjct: 731 VPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVE 790

Query: 321 KFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
            FIEE K+      +  +W  +L AC+++G IE G R   KL E+     S ++L  N++
Sbjct: 791 SFIEEMKL----TSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMF 846

Query: 380 KEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              G WD +   VR L+S  G+KK+PGCS +EVNG V  FL+ D  H +  EI+
Sbjct: 847 AAKGMWD-DVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIH 899



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 172/365 (47%), Gaps = 37/365 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++   +   +V  + +M   G E N +T+   +KAC +   LE FG  VHA  +K 
Sbjct: 200 LITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLE-FGKQVHAEAIKV 258

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV S+L                               VD Y K G+   A  +F
Sbjct: 259 GDFSDLFVGSAL-------------------------------VDLYAKCGEMVLAERVF 287

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP++NAVSW+A++  ++++ D ++VL+LF +M    +  ++  L +VL  CA+ G + 
Sbjct: 288 LCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLR 347

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS A R   E +  ++  +VDMYSKCG    AL VF  I + D  +W+A+I+ + 
Sbjct: 348 AGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLD 407

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G ++++ E+F RM  SG  P + T  ++++  T    +  G ++   +   YG E   
Sbjct: 408 QKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCK-YGFEYDN 466

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                +V +  + G V++  +  E         D   W ALLS        + G R++ +
Sbjct: 467 TVCNALVTMYMKIGSVQDGCRVFEATT----NRDLISWNALLSGFHDNETCDTGLRIFNQ 522

Query: 361 LAEMG 365
           +   G
Sbjct: 523 MLAEG 527



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 37/330 (11%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M   G  PN +T   L+ A   LG L  +G  +HA V K+GF  D  V ++L+  Y    
Sbjct: 422 MRHSGVIPNQFTLASLVSAATDLGDLY-YGESIHACVCKYGFEYDNTVCNALVTMYM--- 477

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                       K+G  ++   +FE    R+ +SW+A+++ +  
Sbjct: 478 ----------------------------KIGSVQDGCRVFEATTNRDLISWNALLSGFHD 509

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
                  L +F QM   G  PN    +S+L +C+ L  +  G  VH+   +  L+ N  +
Sbjct: 510 NETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 569

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA+VDMY+K   +  A ++F  +  +D  AW  +++G A +G  +K+++ F +M + G 
Sbjct: 570 GTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGV 629

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P E T  + L+ C+    +  G  L  +M+   G    +   + +VD+ A+ G VE+AE
Sbjct: 630 KPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGK 350
              +    GL   D   W  ++     +G+
Sbjct: 689 VVFD----GLVSRDTVSWNTIICGYSQHGQ 714



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 170/385 (44%), Gaps = 70/385 (18%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           L++FC +   ++ F  + +T   ++K C   G L   G  VH+  ++ G   D F+   L
Sbjct: 315 LNLFCRMTGSEINF--SKFTLSTVLKGCANSGNLRA-GQIVHSLAIRIGCELDEFISCCL 371

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
                                          VD Y K G   +A ++F ++ + + VSWS
Sbjct: 372 -------------------------------VDMYSKCGLAGDALKVFVRIEDPDVVSWS 400

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
           AI+    +    +E   +F++M+  G+ PN+  L S+++A   LG +  G  +H+   +Y
Sbjct: 401 AIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKY 460

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
             E +  +  A+V MY K G V     VFE  +N+D  +WNA++SG   N      L +F
Sbjct: 461 GFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIF 520

Query: 253 DRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLN---------------- 285
           ++M+  G  P   TF+++L +C+           HA++V++ L+                
Sbjct: 521 NQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKN 580

Query: 286 -LFENMSAVYG--VEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGAL 341
              E+   ++   ++  L  +  +V   A+ G  E+A K FI+ +  G+   +  +  + 
Sbjct: 581 RFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTL-ASS 639

Query: 342 LSACRIYGKIEVGNRVWRKLAEMGI 366
           LS C     ++ G    R+L  M I
Sbjct: 640 LSGCSRIATLDSG----RQLHSMAI 660



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 143/276 (51%), Gaps = 9/276 (3%)

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           +PD  +  W ++V+ Y K G    A ++F ++PER+ VSW+A++  +         ++LF
Sbjct: 160 NPDSHL--WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLF 217

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +M+  G++ NE    + L AC+    +  G  VH+ A +     ++ + +A+VD+Y+KC
Sbjct: 218 CEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKC 277

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G +  A  VF  +  ++A +WNA+++G A  GDA+K L LF RM  S    ++ T   VL
Sbjct: 278 GEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVL 337

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGL 330
             C ++  +R G  +  +++   G E       C+VD+ ++ G+  +A K F+      +
Sbjct: 338 KGCANSGNLRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVR-----I 391

Query: 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
              D   W A+++     G+      V++++   G+
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGV 427



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 113/259 (43%), Gaps = 38/259 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q    + +V C++ M   G +PN +T    +  C  +  L++ G  +H+  +K 
Sbjct: 604 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS-GRQLHSMAIKA 662

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV S+L++ Y+    +  A  +FD    RD V+W T++ GY + G    A + F
Sbjct: 663 GQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAF 722

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M +   V                               P+E   + VL+AC+H+G I 
Sbjct: 723 EAMLDEGTV-------------------------------PDEVTFIGVLSACSHMGLIE 751

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G    +S +K Y +   +     +VD+  + G  H   S  E +    +   W  ++  
Sbjct: 752 EGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGA 811

Query: 239 VAMNGD----AKKSLELFD 253
             M+G+     + +++LF+
Sbjct: 812 CKMHGNIEFGERAAMKLFE 830



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/295 (22%), Positives = 119/295 (40%), Gaps = 21/295 (7%)

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA----R 117
           F + P  +S   +F   +  +  A    + +P            G+   GD +N     +
Sbjct: 35  FFKKPQTISRNFQFSIRLKSLSCALDAIESNPT-----------GHWAFGDAQNLPVRLQ 83

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + F+K P + +          ++I +  E   ++R + +   K        +L  CA  G
Sbjct: 84  DGFQKTPSKLSSPNRPNSTPGNKIPETVEKKRIWRGL-DFDSKGRLRQYSGMLRTCASKG 142

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            + +G  +H    +  +  +  L  ++V++Y+KCG  + A  VF  I  +D  +W A+I+
Sbjct: 143 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALIT 202

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G    G    ++ LF  M + G +  E T+   L  C+    +  G  +      V G  
Sbjct: 203 GFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKV-GDF 261

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             L   + +VDL A+ G +  AE+        +   +A  W ALL+     G  E
Sbjct: 262 SDLFVGSALVDLYAKCGEMVLAERVFL----CMPKQNAVSWNALLNGFAQMGDAE 312


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 248/446 (55%), Gaps = 6/446 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q      ++  + DM     +P++     ++ AC   G L ++G  +H  V   
Sbjct: 193 IIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNL-SYGRTIHEFVKDN 251

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D  + ++L+  Y+    M  AR ++D    + ++  T M+ GY K+G  ++AR +F
Sbjct: 252 GYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIF 311

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M ER+ V WSA+++ Y+     +E L LF +M +    P++  ++SV++AC+H+GA+ 
Sbjct: 312 DQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALA 371

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           Q  W+H+Y  R    + + +  A++DMY+KCG++  A  VFE +  K+  +W++MI+  A
Sbjct: 372 QANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFA 431

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G+A  +++LF RM +   +P   TF+ VL  C HA +V +G  LF +M   +G+ P  
Sbjct: 432 MHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTR 491

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDL  RA  + +A + IE         +  +WG+L+SAC+++G+ E+G    ++
Sbjct: 492 EHYGCMVDLYCRANFLRKAIELIETMP---FAPNVIIWGSLMSACQVHGEAELGEFAAKR 548

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+        V+  NIY KE  W+ +   +RK +S  G+ K+   S IE+N  V  F+
Sbjct: 549 LLELEPDHDGALVVLSNIYAKEKRWN-DVGLIRKSMSYKGISKEKASSRIEINNQVHMFM 607

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNLV 445
             D  H Q+ EIY  +   +    LV
Sbjct: 608 MADRYHKQSDEIYEKLDEVVSKLKLV 633



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 185/398 (46%), Gaps = 69/398 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++R   +++FP+ ++F Y ++  +  F  + ++FP L+KA   +    N G+ +H    K
Sbjct: 91  LLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAF-NHGLEIHGLASK 149

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF +DPF+ + L+  Y+      + R + D                         AR L
Sbjct: 150 LGFVDDPFIQTGLIAMYA------SCRRIMD-------------------------ARLL 178

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+KM   +AV+W+ I+  Y +   + + L LF  M+   MKP+   L +VL+AC H G +
Sbjct: 179 FDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNL 238

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK------------ 227
           + G  +H + K      +  L TA+++MY+ CG +  A  +++G+S+K            
Sbjct: 239 SYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGY 298

Query: 228 -------------------DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                              D   W+AMISG A +   +++L+LFD M++  + P + T +
Sbjct: 299 AKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITML 358

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           +V++ C+H   +    N         G    L     ++D+ A+ G + +A +  E    
Sbjct: 359 SVISACSHVGALAQA-NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFE---- 413

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +   +   W ++++A  ++G  +   +++R++ E+ I
Sbjct: 414 NMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNI 451


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 149/427 (34%), Positives = 236/427 (55%), Gaps = 34/427 (7%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           NF   S++ Y  M+     P+NYTF  +IK+C  L  L++ G  VH HV+  GFG D +V
Sbjct: 90  NFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALKH-GRVVHGHVLVHGFGLDVYV 148

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            ++L+  Y                               GK GD  NAR++F+K+ ER+ 
Sbjct: 149 QAALVALY-------------------------------GKCGDLINARKVFDKIRERSI 177

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           V+W+++++ Y +    KE + LF +M+E G++P+ +  VSVL+ACAHLGA + G WVH Y
Sbjct: 178 VAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEY 237

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
                L+ NV+L T++++MY +CG+V  A  VF+ +  ++  AW AMISG   NG   ++
Sbjct: 238 IVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQA 297

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           +ELF  M ++G  P   TFVAVL+ C HA +V +G  LF ++   Y + P +EH  C+VD
Sbjct: 298 VELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVD 357

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +L RAG+++EA  FI+E++         +  A+L AC+++   ++G +V   L      +
Sbjct: 358 MLGRAGLLDEAYNFIKEEIP--ENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPEN 415

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
            + +V+  NIY  AG   +   VR  +    +KK+ G S +EV+     F  GD  H++ 
Sbjct: 416 PAHYVILSNIYALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSET 475

Query: 429 GEIYRVI 435
             IY  +
Sbjct: 476 NAIYHYL 482



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 112/247 (45%), Gaps = 35/247 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q  F K ++  +  M + G EP++ TF  ++ AC  LG   + G +VH ++V  
Sbjct: 183 MISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAF-SLGCWVHEYIVGN 241

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  + +SL+  Y     +  AR +FD   +R+VV WT M+ GYG  G    A ELF
Sbjct: 242 GLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELF 301

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M  RN                              G+ PN    V+VL+ACAH G + 
Sbjct: 302 HEM-RRN------------------------------GLFPNSITFVAVLSACAHAGLVN 330

Query: 181 QGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALS-VFEGISNKDAGA-WNAMIS 237
           +G  +  S  + YHL   V     +VDM  + G +  A + + E I    A A   AM+ 
Sbjct: 331 EGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPAILTAMLG 390

Query: 238 GVAMNGD 244
              M+ +
Sbjct: 391 ACKMHKN 397


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 148/428 (34%), Positives = 241/428 (56%), Gaps = 15/428 (3%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS-SLLEFYSLV 79
           M+  GF P+  T   ++ AC  L   E  G  VHAH+VK     D  V++ +L++ Y+  
Sbjct: 1   MMATGFFPDEVTLSSVMSACAGLAA-EREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKC 59

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            +   AR +FD  P R VV+ T+++ GY K  + E+A+ +F +M E+N ++W+ ++AAY+
Sbjct: 60  GRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYA 119

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR------YH 193
           +  + +E + LF Q++   + P      +VL AC ++  +  G   H +  +      + 
Sbjct: 120 QNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFG 179

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            E +V +  ++VDMY K G +     VFE ++ +D  +WNAMI G A NG AK +L LF+
Sbjct: 180 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFE 239

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           RM+ S   P   T + VL+ C H+ +V +G   F  M+  +G+ P  +HY C+VDLL RA
Sbjct: 240 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRA 299

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G ++EAE+ I++        D+ +W +LL ACR++  +E+G R   +L E+   +   +V
Sbjct: 300 GHLKEAEELIKDM---PTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPENSGPYV 356

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y E G   +  +VR+ + + G+ K+PGCS IE+   +  FLA DNRH    E   
Sbjct: 357 LLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHPCRNE--- 413

Query: 434 VIHSFLKM 441
            IHS L++
Sbjct: 414 -IHSTLRI 420


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  267 bits (683), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 241/435 (55%), Gaps = 39/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY      K ++  + +M+    +P+  T   ++ AC   G ++  G  VH+ +   
Sbjct: 206 IISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQ-LGRQVHSWIDDH 264

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G +  +V++L++ YS                               K G+ E A  LF
Sbjct: 265 GLGSNLKIVNALIDLYS-------------------------------KCGEVETACGLF 293

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +  ++ +SW+ ++  Y+ ++ +KE L LF++M   G  PN+  ++S+L ACA LGAI 
Sbjct: 294 QGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAID 353

Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G W+H Y  KR     N   L T+++DMY+KCG + +A  VF  + ++   A NAMI G
Sbjct: 354 FGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFG 413

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G A  + ++F RM K+G +P + TFV +L+ C+H+ M+  G  +F +M+  Y + P
Sbjct: 414 FAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITP 473

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL   G+ +EAE+ I          D  +W +LL AC+++G +E+G    
Sbjct: 474 KLEHYGCMIDLLGHLGLFKEAEEMINTMT---MEPDGVIWCSLLKACKMHGNVELGESFA 530

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           +KL ++   +  ++VL  NIY  AG W+  AN +R L+++ GMKK PGCS IE++ VV E
Sbjct: 531 QKLIKIEPENPGSYVLLSNIYATAGRWNEVAN-IRALLNDKGMKKVPGCSSIEIDSVVHE 589

Query: 418 FLAGDNRHAQAGEIY 432
           F+ GD  H +  EIY
Sbjct: 590 FIIGDKFHPRNREIY 604



 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 125/397 (31%), Positives = 215/397 (54%), Gaps = 37/397 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M RG+  ++ P  ++  Y+ M+ +G  PN+YTFP L+K+C  L  +   G  +H HV+K 
Sbjct: 74  MFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKL-KVSKEGQQIHGHVLKL 132

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D +V +SL+  Y    +   A  +FD S  RDVV++T ++ GY   G  E+A+++F
Sbjct: 133 GYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMF 192

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P ++ VSW+AI++ Y+   + KE L LF++M +  +KP+ES +V+V++ACA  G+I 
Sbjct: 193 DEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQ 252

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+   + L  N+ +  A++D+YSKCG V +A  +F+G+SNKD  +WN MI G  
Sbjct: 253 LGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYT 312

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
                K++L LF  M++SG  P + T +++L  C     +  G  ++++ +   + GV  
Sbjct: 313 HLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYID-KRIKGVTN 371

Query: 299 QLEHYACVVDLLARAGMVEEAEK--------------------------------FIEEK 326
                  ++D+ A+ G +E A +                                F   +
Sbjct: 372 ASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMR 431

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
             G+   D    G LLSAC   G +++G R++R + +
Sbjct: 432 KNGIEPDDITFVG-LLSACSHSGMLDLGRRIFRSMTQ 467



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 145/344 (42%), Gaps = 68/344 (19%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
           N+    L+  C  L  L      +HA ++K G     + +S LLEF  L           
Sbjct: 2   NHPSLSLLHNCKTLQSLR----IIHAQMIKTGLHNTNYALSRLLEFCIL----------- 46

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
             SP+ D + +               A  +FE + E N + W+ +   ++  SD    + 
Sbjct: 47  --SPNFDGLPY---------------AISVFETIQEPNLLIWNTMFRGHALSSDPVSAIK 89

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           L+  M  +G+ PN      +L +CA L    +G  +H +  +   E ++ + T+++ MY 
Sbjct: 90  LYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYV 149

Query: 210 KCGHVHSALSVFEGISN-------------------------------KDAGAWNAMISG 238
           K G    A  VF+G S+                               KD  +WNA+ISG
Sbjct: 150 KNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISG 209

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A  G+ K++L+LF  M+K+  +P E+T V V++ C  +  ++ G  +   +   +G+  
Sbjct: 210 YADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDD-HGLGS 268

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            L+    ++DL ++ G VE A    +    GL   D   W  ++
Sbjct: 269 NLKIVNALIDLYSKCGEVETACGLFQ----GLSNKDVISWNTMI 308


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 248/441 (56%), Gaps = 8/441 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +  F   ++  Y  M+  G EP+ YT   L+  C  L  +   G  VH  + + 
Sbjct: 203 MIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIR-LGKGVHGWIERR 261

Query: 61  G--FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           G  +  +  + ++LL+ Y    + G A+  FD    +D+ +W TMV G+ ++GD E A+ 
Sbjct: 262 GPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQA 321

Query: 119 LFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHL 176
           +F++MP+R+ VSW++++  YS+   D + V  LF +M  V  +KP+   +VS+++  A+ 
Sbjct: 322 VFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANN 381

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G ++ G WVH    R  L+ +  L++A++DMY KCG +  A  VF+  + KD   W +MI
Sbjct: 382 GELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMI 441

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G+A +G+ +++L+LF RM + G  P   T +AVLT C+H+ +V +GL++F +M   +G 
Sbjct: 442 TGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGF 501

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P+ EHY  +VDLL RAG VEEA+  +++KM        ++WG++LSACR    IE    
Sbjct: 502 DPETEHYGSLVDLLCRAGRVEEAKDIVQKKMP--MRPSQSMWGSILSACRGGEDIETAEL 559

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG-CSVIEVNGVV 415
              +L ++       +VL  NIY   G    ++K R+ +   G+KK  G  SV+ V G+ 
Sbjct: 560 ALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLH 619

Query: 416 EEFLAGDNRHAQAGEIYRVIH 436
               A    H +  EI R++ 
Sbjct: 620 RFVAAEKQNHPRWTEIKRILQ 640



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 44/313 (14%)

Query: 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
           W ++V  Y ++G+F  A ++F +MP  +  S++ ++  Y++     E L L+ +M   G+
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSA 217
           +P+E  ++S+L  C HL  I  G  VH + +R       N+IL+ A++DMY KC     A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288

Query: 218 LSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
              F+ +  KD  +WN M+ G    GD + +  +FD+M K       +            
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQ 348

Query: 278 KMVRDGLNLFENMSAVYGVEP----------------QLEH------------------- 302
           + VR+   LF  M+ V  V+P                +L H                   
Sbjct: 349 RTVRE---LFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFL 405

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
            + ++D+  + G++E A  F+  K       D  +W ++++    +G  +   +++ ++ 
Sbjct: 406 SSALIDMYCKCGIIERA--FMVFKTA--TEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461

Query: 363 EMGITDFSTHVLS 375
           E G+T  +  +L+
Sbjct: 462 EEGVTPNNVTLLA 474



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 151/361 (41%), Gaps = 60/361 (16%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVH--KMGTARALF-DKSPDRDVVTWTTMVDGYGK 109
           V A +++F    D F +S L+ F ++ +   +  A+ LF + +P+ +V  + TM+     
Sbjct: 53  VLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMI----- 107

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
                            +AVS           S   E   L+  M    + P+    + +
Sbjct: 108 -----------------SAVS-----------SSKNECFGLYSSMIRHRVSPDRQTFLYL 139

Query: 170 LTACAHLGAITQGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           + A + L  + Q   +H +      L     L  ++V  Y + G+   A  VF  + + D
Sbjct: 140 MKASSFLSEVKQ---IHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPD 196

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL-- 286
             ++N MI G A  G + ++L+L+ +MV  G +P E T +++L  C H   +R G  +  
Sbjct: 197 VSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHG 256

Query: 287 -FENMSAVYGVEPQLEHYACVVDLLAR---AGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
             E    VY     L +   ++D+  +   +G+ + A   +++K       D   W  ++
Sbjct: 257 WIERRGPVYSSNLILSN--ALLDMYFKCKESGLAKRAFDAMKKK-------DMRSWNTMV 307

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402
                 G +E    V+ ++ +  +  +++ +  Y+   + G D     VR+L  E  + +
Sbjct: 308 VGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYS---KKGCDQRT--VRELFYEMTIVE 362

Query: 403 K 403
           K
Sbjct: 363 K 363


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 246/442 (55%), Gaps = 39/442 (8%)

Query: 1   MIRGYMQANFPKLSVFC-YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M RGY +   P L VF  ++++L+ G  P+NYTFP L+KAC +   LE  G  +H   +K
Sbjct: 100 MARGYSRFTNP-LEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEE-GRQLHCLSMK 157

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G                                D +V    T+++ Y +  D ++AR +
Sbjct: 158 LGL-------------------------------DDNVYVCPTLINMYTECEDVDSARXV 186

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+++ E   V ++A++  Y+R +   E LSLFR+MQ   +KPNE  L+SVL++CA LG++
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSL 246

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+H YAK++   K V + TA++DM++KCG +  A+S+FE +  KD  AW+AMI   
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAY 306

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G A+KS+ +F+RM     QP E TF+ +L  C+H   V +G   F  M + +G+ P 
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY  +VDLL+ AG +E+A +FI++           +W  LL+AC  +  +++  +V  
Sbjct: 367 IKHYGSMVDLLSXAGNLEDAYEFIDKLP---ISPTPMLWRILLAACSSHNNLDLAEKVSE 423

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           ++ E+  +    +V+  N+Y +   W+   + +RK++ +    K PGCS IEVN VV EF
Sbjct: 424 RIFELDDSHGGDYVILSNLYARNKKWEY-VDSLRKVMKDRKAVKVPGCSSIEVNNVVHEF 482

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
            +GD   +   +++R +   +K
Sbjct: 483 FSGDGVKSATTKLHRALDEMVK 504



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LFE M E + V ++++   YSR ++  EV SLF ++ E G+ P+     S+L ACA 
Sbjct: 82  ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             A+ +G  +H  + +  L+ NV +   +++MY++C  V SA  VF+ I       +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAM 201

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A      ++L LF  M     +P E T ++VL++C     +  G       +  + 
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHS 260

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
               ++    ++D+ A+ G +++A    E+    +   D   W A++ A   +GK E
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEK----MRYKDTQAWSAMIVAYANHGKAE 313


>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
          Length = 527

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 244/439 (55%), Gaps = 38/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY+     + ++  Y +M+  G EP+N+T+P L+KAC  L  +   G  +H  V K 
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIRE-GKQIHGQVFKL 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL                               ++ YG+ G+ E +  +F
Sbjct: 162 GLEADVFVQNSL-------------------------------INMYGRCGEMELSSAVF 190

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
           EK+  + A SWS++++A + +  + E L LFR M  E  +K  ESG+VS L ACA+ GA+
Sbjct: 191 EKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGAL 250

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +H +  R   E N+I+ T++VDMY KCG +  AL +F+ +  ++   ++AMISG+
Sbjct: 251 NLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGL 310

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G+ + +L +F +M+K G +P    +V+VL  C+H+ +V++G  +F  M     VEP 
Sbjct: 311 ALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPT 370

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHY C+VDLL RAG++EEA + I+     +   D  +W   LS CR+   IE+G    +
Sbjct: 371 AEHYGCLVDLLGRAGLLEEALETIQSI--PIEKNDV-IWRTFLSQCRVRQNIELGQIAAQ 427

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L ++   +   ++L  N+Y +   WD +  + R  I+  G+K+ PG S++E+ G    F
Sbjct: 428 ELLKLSSHNPGDYLLISNLYSQGQMWD-DVARTRTEIAIKGLKQTPGFSIVELKGKTHRF 486

Query: 419 LAGDNRHAQAGEIYRVIHS 437
           ++ D  H +  EIY+++H 
Sbjct: 487 VSQDRSHPKCKEIYKMLHQ 505



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F  + +     ++ ++  Y  +  F+E L  + +M + G +P+      +L AC  
Sbjct: 85  AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L +I +G  +H    +  LE +V +  ++++MY +CG +  + +VFE + +K A +W++M
Sbjct: 145 LKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSM 204

Query: 236 ISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLN----LFENM 290
           +S  A  G   + L LF  M  ++  +  E+  V+ L  C +   +  G++    L  N+
Sbjct: 205 VSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNI 264

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE--EKMGGLGGGDANVWGALLSACRIY 348
           S     E  +     +VD+  + G +++A    +  EK   L       + A++S   ++
Sbjct: 265 S-----ELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL------TYSAMISGLALH 313

Query: 349 GKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV 391
           G+ E   R++ K+ + G+  D   +V   N    +G   E  +V
Sbjct: 314 GEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 357


>gi|242062828|ref|XP_002452703.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
 gi|241932534|gb|EES05679.1| hypothetical protein SORBIDRAFT_04g031000 [Sorghum bicolor]
          Length = 622

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 144/429 (33%), Positives = 230/429 (53%), Gaps = 35/429 (8%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           P  ++  Y+DML+ G  P++YTFP ++KAC  L  L+  G  + AH+ K G   D  V +
Sbjct: 128 PAAALRLYVDMLEAGVGPDSYTFPFVLKACAQLASLQQ-GRQLQAHIEKLGLQHDEHVQN 186

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
           SL+ FY    +   AR  FD+  D                              ER   S
Sbjct: 187 SLISFYGKCGEPAMARLAFDRVEDE-----------------------------ERTTAS 217

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           WSA++AAY++   + E L  F  M   G +P+ES +VS ++ACAHLGA   G  +H    
Sbjct: 218 WSALLAAYTKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFDVGRSIHCALL 277

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           R     N I+ T++VDMY+KCG +  A +VF+ + +K+A A++AM+SG+A++GD +K+L+
Sbjct: 278 RNTARLNTIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWAYSAMLSGLALHGDGRKALQ 337

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           +FD MV+ G  P    +V VL  C+ A ++ DGL  F+ M   +   P  +HY C+VDL+
Sbjct: 338 VFDAMVREGHAPDAAAYVGVLNACSRAGLLEDGLRCFDRMRLEHKFAPNAQHYGCMVDLM 397

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
           ARAG +++A   I    G +  G  +  W +LL+ACRI+G +++      +L  +G  + 
Sbjct: 398 ARAGRLDDARALI----GSMPTGPTDTAWRSLLNACRIHGDLDLAESALEELRSLGAANA 453

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             +V+  +++  A     A   R    + G+ + PG S +EV G +  F++ D  H +  
Sbjct: 454 GDYVIVADMHARAKNWAAAAAFRTEAVDWGLAQSPGFSAVEVRGELHRFVSQDMSHPRTR 513

Query: 430 EIYRVIHSF 438
           +IY ++H  
Sbjct: 514 DIYEMLHQM 522



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 125/289 (43%), Gaps = 24/289 (8%)

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAY----SRISDFKEVLSLFRQMQEVGMKPNE 163
           G  G  E A  +FE + E  A  ++ +M  +        +    L L+  M E G+ P+ 
Sbjct: 88  GWPGGMELAASIFESLVEPEAFDYNTLMRGHVGGGRGDREPAAALRLYVDMLEAGVGPDS 147

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
                VL ACA L ++ QG  + ++ ++  L+ +  +  +++  Y KCG    A   F+ 
Sbjct: 148 YTFPFVLKACAQLASLQQGRQLQAHIEKLGLQHDEHVQNSLISFYGKCGEPAMARLAFDR 207

Query: 224 ISNKD--AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           + +++    +W+A+++     G   + LE F  MV  G +P E++ V+ ++ C H     
Sbjct: 208 VEDEERTTASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESSMVSAISACAHLGAFD 267

Query: 282 DGLN----LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337
            G +    L  N + +  +         +VD+ A+ G +E+A    +         D N 
Sbjct: 268 VGRSIHCALLRNTARLNTI-----MQTSLVDMYAKCGSIEKAAAVFDAM------DDKNA 316

Query: 338 WG--ALLSACRIYGKIEVGNRVWRKLAEMG-ITDFSTHVLSYNIYKEAG 383
           W   A+LS   ++G      +V+  +   G   D + +V   N    AG
Sbjct: 317 WAYSAMLSGLALHGDGRKALQVFDAMVREGHAPDAAAYVGVLNACSRAG 365


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  267 bits (682), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 251/439 (57%), Gaps = 40/439 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY +  F + +V  +  + +  GFEP+  +   ++ AC  LG LE  G +V   VV+
Sbjct: 189 LLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLE-LGRWVEGFVVE 247

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   + ++ S+L+  YS                               K G+  ++R +
Sbjct: 248 RGMKVNSYIGSALISMYS-------------------------------KCGELVSSRRI 276

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ MP R+ ++W+A ++AY++     E +SLF  M+E G+ PN+  L +VL+ACA +GA+
Sbjct: 277 FDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGAL 336

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +  YA    L+ ++ +ATA++DMY+KCG + SA  VF  +  K+  +WNAMIS +
Sbjct: 337 DLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISAL 396

Query: 240 AMNGDAKKSLELFDRMVKSG--TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           A +G AK++L LF+RM   G   +P + TFV++L+ C HA +V +G  LF+ MS ++G+ 
Sbjct: 397 ASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLV 456

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY+C+VDLL+RAG + EA   I EKM      D    GAL SAC+    +++G RV
Sbjct: 457 PKIEHYSCMVDLLSRAGHLYEAWDVI-EKMP--EKPDNVTLGALHSACQRKKNVDIGERV 513

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L E+  ++   +++S  IY+    WD +A ++R L+ E G+ K PGCS IEV   + 
Sbjct: 514 IQMLLELDPSNSGNYIISSKIYENLNMWD-DAARMRALMRENGVTKTPGCSWIEVGNQLR 572

Query: 417 EFLAGDNRHAQAGEIYRVI 435
           EFL+GD     + ++  +I
Sbjct: 573 EFLSGDGLTLDSIDVRNII 591



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 173/361 (47%), Gaps = 45/361 (12%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           ++P L++  Y  M  +   PNN+TFP +  AC  L  +       H  V K G   D   
Sbjct: 97  DYP-LTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIR-MARLAHCEVFKLGLDNDHHT 154

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
           V+S++  Y    + G AR +FD+  ++D+V+W +++ GY K+G    A E+F ++ E   
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLRE--- 211

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
                                      E G +P+E  LVSVL AC  LG +  G WV  +
Sbjct: 212 ---------------------------ESGFEPDEMSLVSVLGACGELGDLELGRWVEGF 244

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
                ++ N  + +A++ MYSKCG + S+  +F+G+ ++D   WNA IS  A NG A ++
Sbjct: 245 VVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEA 304

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH----YA 304
           + LF  M ++G  P + T  AVL+ C     +  G  + E     Y     L+H      
Sbjct: 305 ISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDE-----YATHRGLQHDIFVAT 359

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            ++D+ A+ G +E A++   +    +   +   W A++SA   +GK +    ++ ++++ 
Sbjct: 360 ALIDMYAKCGSLESAQRVFND----MPRKNDASWNAMISALASHGKAKEALSLFERMSDE 415

Query: 365 G 365
           G
Sbjct: 416 G 416



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 8/260 (3%)

Query: 110 MGDFENARELFEKM-PERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGMKPNESGLV 167
           + DF  +  +F  + P  N  +++ ++ A +    D+   L L+ QM+ + + PN     
Sbjct: 62  LKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFP 121

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
            V  ACA+L  I      H    +  L+ +     ++V MY +CG    A  VF+ I+ K
Sbjct: 122 FVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEK 181

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           D  +WN+++SG A  G A++++E+F R+  +SG +P E + V+VL  C     +  G   
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELG-RW 240

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
            E      G++      + ++ + ++ G +  + +  +    G+   D   W A +SA  
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFD----GMPSRDFITWNAAISAYA 296

Query: 347 IYGKIEVGNRVWRKLAEMGI 366
             G  +    ++  + E G+
Sbjct: 297 QNGMADEAISLFHSMKENGV 316


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  267 bits (682), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 144/426 (33%), Positives = 242/426 (56%), Gaps = 13/426 (3%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           S+  +++M++  F+P+  T   +++AC  LG LE FG +VH +++  G+  D    + L+
Sbjct: 207 SIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLE-FGKYVHDYMITSGYECDTTASNILI 264

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY---GKMGDFENARELFEKMPERNAVS 130
             Y+    +  ++ +F     +D V+W +M++ Y   GKMGD   + ++FE M  R+ ++
Sbjct: 265 NMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGD---SLKVFENMKARDIIT 321

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+ I+A+     D    L +  +M+  G+ P+ + ++S+L  C+ L A  QG  +H    
Sbjct: 322 WNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIF 381

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +  LE +V +   +++MYSKCG + ++  VF+ +  KD   W A+IS   M G+ KK++ 
Sbjct: 382 KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVR 441

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
            F  M  +G  P    FVA++  C+H+ +V +GLN F  M   Y +EP++EHYACVVDLL
Sbjct: 442 AFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLL 501

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
           +R+ ++++AE FI   +      D+++WGALLSACR+ G  E+  RV  ++ E+   D  
Sbjct: 502 SRSALLDKAEDFI---LSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTG 558

Query: 371 THVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
            +VL  NIY   G WD +   +RK I   G+KK PGCS +E+   V  F  G     Q  
Sbjct: 559 YYVLVSNIYAALGKWD-QVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFE 617

Query: 430 EIYRVI 435
           E+ +++
Sbjct: 618 EVNKLL 623



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 169/379 (44%), Gaps = 67/379 (17%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y +   +  +P+ YTFP +I AC  L   E     +H  V+  GFG D ++ ++L++ Y 
Sbjct: 103 YSETQRIRLQPDTYTFPSVINACAGLLDFE-MAKSIHDRVLDMGFGSDLYIGNALIDMYC 161

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
             + +  AR +F++ P RDVV+W +++ GY   G +  A E++                 
Sbjct: 162 RFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIY----------------- 204

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y  I  F E+++ F        KP+   + S+L AC HLG +  G +VH Y      E +
Sbjct: 205 YQSIKLFMEMVNQF--------KPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECD 256

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
              +  +++MY+KCG++ ++  VF G+  KD+ +WN+MI+    NG    SL++F+ M  
Sbjct: 257 TTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMKA 316

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL----------------- 300
                   T+  ++ +C H++    GL +   M    GV P +                 
Sbjct: 317 RDI----ITWNTIIASCVHSEDCNLGLRMISRMRT-EGVTPDMATMLSILPVCSLLAAKR 371

Query: 301 ---EHYACVVDLLARAGMVEEAEKFIE--EKMGGLGGG----------DANVWGALLSAC 345
              E + C+  L   +  V      IE   K G L             D   W AL+SAC
Sbjct: 372 QGKEIHGCIFKLGLESD-VPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISAC 430

Query: 346 RIYGKIEVGNRVWRKLAEM 364
            +YG+   G +  R   EM
Sbjct: 431 GMYGE---GKKAVRAFGEM 446



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 117/258 (45%), Gaps = 11/258 (4%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           P  N   W++I+ A +    F E LSL+ + Q + ++P+     SV+ ACA L       
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            +H          ++ +  A++DMY +   +  A  VFE +  +D  +WN++ISG   NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 244 DAKKSLELFDRMVK------SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              ++LE++ + +K      +  +P   T  ++L  C H   +  G  + + M    G E
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYM-ITSGYE 254

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
                   ++++ A+ G +  +    +E   G+   D+  W ++++     GK+    +V
Sbjct: 255 CDTTASNILINMYAKCGNLLAS----QEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKV 310

Query: 358 WRKLAEMGITDFSTHVLS 375
           +  +    I  ++T + S
Sbjct: 311 FENMKARDIITWNTIIAS 328



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 18/183 (9%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-N 226
           S+  A A     TQ   +HS      L  +VI +  ++  Y+      S+ SVF   S +
Sbjct: 18  SISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPS 77

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            +   WN++I  +  NG   ++L L+    +   QP   TF +V+  C        GL  
Sbjct: 78  NNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACA-------GLLD 130

Query: 287 FENMSAVY------GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
           FE   +++      G    L     ++D+  R   +++A K  EE    +   D   W +
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEE----MPLRDVVSWNS 186

Query: 341 LLS 343
           L+S
Sbjct: 187 LIS 189


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  267 bits (682), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 244/439 (55%), Gaps = 38/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY+     + ++  Y +M+  G EP+N+T+P L+KAC  L  +   G  +H  V K 
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIRE-GKQIHGQVFKL 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL                               ++ YG+ G+ E +  +F
Sbjct: 162 GLEADVFVQNSL-------------------------------INMYGRCGEMELSSAVF 190

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
           EK+  + A SWS++++A + +  + E L LFR M  E  +K  ESG+VS L ACA+ GA+
Sbjct: 191 EKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGAL 250

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +H +  R   E N+I+ T++VDMY KCG +  AL +F+ +  ++   ++AMISG+
Sbjct: 251 NLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGL 310

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++G+ + +L +F +M+K G +P    +V+VL  C+H+ +V++G  +F  M     VEP 
Sbjct: 311 ALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPT 370

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHY C+VDLL RAG++EEA + I+     +   D  +W   LS CR+   IE+G    +
Sbjct: 371 AEHYGCLVDLLGRAGLLEEALETIQSI--PIEKNDV-IWRTFLSQCRVRQNIELGQIAAQ 427

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L ++   +   ++L  N+Y +   WD +  + R  I+  G+K+ PG S++E+ G    F
Sbjct: 428 ELLKLSSHNPGDYLLISNLYSQGQMWD-DVARTRTEIAIKGLKQTPGFSIVELKGKTHRF 486

Query: 419 LAGDNRHAQAGEIYRVIHS 437
           ++ D  H +  EIY+++H 
Sbjct: 487 VSQDRSHPKCKEIYKMLHQ 505



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 19/284 (6%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F  + +     ++ ++  Y  +  F+E L  + +M + G +P+      +L AC  
Sbjct: 85  AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L +I +G  +H    +  LE +V +  ++++MY +CG +  + +VFE + +K A +W++M
Sbjct: 145 LKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSM 204

Query: 236 ISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLN----LFENM 290
           +S  A  G   + L LF  M  ++  +  E+  V+ L  C +   +  G++    L  N+
Sbjct: 205 VSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNI 264

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE--EKMGGLGGGDANVWGALLSACRIY 348
           S     E  +     +VD+  + G +++A    +  EK   L       + A++S   ++
Sbjct: 265 S-----ELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL------TYSAMISGLALH 313

Query: 349 GKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV 391
           G+ E   R++ K+ + G+  D   +V   N    +G   E  +V
Sbjct: 314 GEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 357


>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/409 (35%), Positives = 220/409 (53%), Gaps = 6/409 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+  N    ++  Y  ML  G   N      L+ AC  L  + + G  +H  VVK 
Sbjct: 504 MIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGD-GWQLHGMVVKK 562

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    F+ ++++ FY+    M  A   F+      + +W  +V G+ K    + AR++F
Sbjct: 563 GFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIF 622

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPER+  SWS +++ Y++    +  L LF +M   G+KPNE  +VSV +A A LG + 
Sbjct: 623 DDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVSVFSAIATLGTLK 682

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAGAWNAMISG 238
           +G W H Y     +  N  L  A++DMY+KCG ++SAL  F  I +K      WNA+I G
Sbjct: 683 EGRWAHEYICNESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDKTFSVSPWNAIICG 742

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G A   L++F  M +   +P   TF+ VL+ C HA +V  G  +F  M + Y VEP
Sbjct: 743 LASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRRIFRIMKSAYNVEP 802

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            ++HY C+VDLL RAG++EEAE+ I          D  +WG LL+ACR +G + +G R  
Sbjct: 803 DIKHYGCMVDLLGRAGLLEEAEEMIRSMP---MKADIVIWGTLLAACRTHGDVNIGERAA 859

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
             LA +  +     VL  NIY +AG   + + VR+ I    M++ PGCS
Sbjct: 860 ESLAGLAPSHGGGKVLLSNIYADAGRWEDVSLVRRAIQNQRMERMPGCS 908



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 191/423 (45%), Gaps = 66/423 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G +Q    + ++  + DM   G  PN+ T   +I AC   G + N  M +HA  +K 
Sbjct: 372 MIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRM-IHAIAIKL 430

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  V ++L+  Y L   +G AR LFD+ P+ ++V+W  M++GY K G  + ARELF
Sbjct: 431 FVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELF 490

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++P+++ +SW  ++  Y  ++   E L ++R M   G+  NE  +V++++AC  L AI 
Sbjct: 491 ERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLALNEILVVNLVSACGRLNAIG 550

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCG---------------HVHS--------- 216
            G  +H    +   +    + T ++  Y+ CG               H+ S         
Sbjct: 551 DGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDHLESWNALVSGFI 610

Query: 217 -------ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
                  A  +F+ +  +D  +W+ MISG A    ++ +LELF +MV SG +P E T V+
Sbjct: 611 KNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVASGIKPNEVTMVS 670

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF---IEEK 326
           V +       +++G    E +     +       A ++D+ A+ G +  A +F   I +K
Sbjct: 671 VFSAIATLGTLKEGRWAHEYICN-ESIPLNDNLRAALIDMYAKCGSINSALQFFNQIRDK 729

Query: 327 MGGLGGGDANVWG------------------------------ALLSACRIYGKIEVGNR 356
              +   +A + G                               +LSAC   G +E G R
Sbjct: 730 TFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLSACCHAGLVEPGRR 789

Query: 357 VWR 359
           ++R
Sbjct: 790 IFR 792



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 163/359 (45%), Gaps = 38/359 (10%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G  +H+ V+K G   + F+ +SL+  Y+    +  A+ LFD  P  + ++   MV GY K
Sbjct: 288 GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK 347

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
            G  +NAR+LF+ MP++  VS++ ++    +   F+E L +F+ M+  G+ PN+  LV+V
Sbjct: 348 AGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRSDGVVPNDLTLVNV 407

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           + AC+H G I     +H+ A +  +E  V+++T ++  Y  C  V  A  +F+ +   + 
Sbjct: 408 IYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNL 467

Query: 230 GAWNAMISGVAMNGDAKKSLELFDR-------------------------------MVKS 258
            +WN M++G A  G    + ELF+R                               M++S
Sbjct: 468 VSWNVMLNGYAKAGLVDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRS 527

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G    E   V +++ C     + DG  L   M    G +        ++   A  GM++ 
Sbjct: 528 GLALNEILVVNLVSACGRLNAIGDGWQL-HGMVVKKGFDCYNFIQTTIIHFYAACGMMDL 586

Query: 319 AEKFIEEKMGGLGGGD-ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           A    E     +G  D    W AL+S       ++   +++  + E  +  +ST +  Y
Sbjct: 587 ACLQFE-----VGAKDHLESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGY 640



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           VS+S+   A   + D +  + +F   +        E  LVS L  C+   + +QG  +HS
Sbjct: 237 VSFSSSTNASPHVQDPQHFIGIFCNARLHQNHYECELALVSALKYCS---SSSQGRQLHS 293

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
              +  L  N  +  ++++MY+K G +  A  +F+     +  + N M+ G A  G    
Sbjct: 294 LVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAKAGQLDN 353

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           + +LFD M   G      ++  ++      +  R+ L +F++M +  GV P 
Sbjct: 354 ARKLFDIMPDKGC----VSYTTMIMGLVQNECFREALEVFKDMRS-DGVVPN 400


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 246/439 (56%), Gaps = 7/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G++Q    + ++   +++   G  P++ +F   + AC  +G +E  G  +H+  +K 
Sbjct: 526 MIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVE-IGRVIHSLAIKT 584

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + +V++ L+  Y+    +     +F     +D V+W +++ G  +    ++AR +F
Sbjct: 585 GCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVF 644

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           EKMP+R+ VSW+AI++AY +    +  L LF  M   G+KPN+  + S+L+AC +LGAI 
Sbjct: 645 EKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIK 704

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H+   +   +  + +  +++ MY KCG+      VFE +   D   WNA++ G A
Sbjct: 705 LGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLITWNAVLVGCA 763

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG  K+++++F++M   G  P + +F+ VL  C+HA +V +G   F +M+  YG+ P +
Sbjct: 764 QNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLV 823

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY C+VDLL RAG + EAE  IE         D+ +W ALL ACRI+  +E+G RV  +
Sbjct: 824 YHYTCMVDLLGRAGYLSEAEALIENMP---VKPDSVIWEALLGACRIHRNVELGQRVAER 880

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L +M     +T+VL  N++   G WD  A ++RKL+ + G+ K+PG S I+V   +  F+
Sbjct: 881 LFQMTKPKSATYVLLSNLFASQGMWDKVA-EIRKLMKDQGLTKEPGISWIQVKNKLHCFV 939

Query: 420 AGDNRHAQAGEIYRVIHSF 438
            GD  H Q  EIY  +  +
Sbjct: 940 TGDRTHDQIEEIYSALKEY 958



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 156/296 (52%), Gaps = 10/296 (3%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           E N Y++  +I A    G L++  + ++  V +    +     ++++  Y+ V ++  AR
Sbjct: 424 ERNEYSWTTMIAAFAQCGRLDD-AIQLYERVPE----QTVATKTAMMTAYAQVGRIQKAR 478

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD+  + +VV W  ++ GY + G  + A++LF+KMP +N+ SW+A++A + +  + +E
Sbjct: 479 LIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESRE 538

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            L L  ++   G  P++S   S L+ACA++G +  G  +HS A +   + N  +   ++ 
Sbjct: 539 ALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLIS 598

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY+KCG+V     VF  I  KD  +WN++ISG++ N     +  +F++M K        +
Sbjct: 599 MYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDV----VS 654

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           + A+++    A      L+LF +M A  G++P       ++      G ++  E+F
Sbjct: 655 WTAIISAYVQAGHGEVALDLFLDMLA-RGIKPNQLTVTSLLSACGNLGAIKLGEQF 709



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 150/321 (46%), Gaps = 33/321 (10%)

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +  AR LFD+ P+++V +W ++V GY        ARELF++MPERN+VSW  +++ Y  I
Sbjct: 280 LKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHI 339

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
           SD+ E   +F +M     +P++S  V VL+A   L  +     +   A +   E +V++ 
Sbjct: 340 SDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVG 399

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT- 260
           +A+++ Y++ G +  A+  FE +  ++  +W  MI+  A  G    +++L++R+ +    
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA 459

Query: 261 --------------------------QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
                                      P    + A++   T   M+++  +LF+ M    
Sbjct: 460 TKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMP--- 516

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            V+      A +   +      E  E  IE    G    D++   A LSAC   G +E+G
Sbjct: 517 -VKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSA-LSACANIGDVEIG 574

Query: 355 NRVWRKLAEMGITDFSTHVLS 375
            RV   LA      F+++V++
Sbjct: 575 -RVIHSLAIKTGCQFNSYVMN 594



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 138/310 (44%), Gaps = 50/310 (16%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +S++  YS   K+  AR LFD    +++ TWT ++ GY K G  E ARE+FE M ERN V
Sbjct: 206 NSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVV 265

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+A+++ Y +  D K    LF +M                                   
Sbjct: 266 SWNAMISGYVQNGDLKNARKLFDEMP---------------------------------- 291

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
                EKNV    +VV  Y  C  +  A  +F+ +  +++ +W  MISG     D  ++ 
Sbjct: 292 -----EKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAW 346

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV---YGVEPQLEHYACV 306
           ++F +M ++  +P ++ FV VL+  T      D L L  ++  +    G E  +   + +
Sbjct: 347 DVFVKMCRTVARPDQSIFVVVLSAITGL----DDLELIGSLRPIAIKTGYEGDVVVGSAI 402

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           ++   R G ++ A  F E     +   +   W  +++A    G+++   +++ ++ E  +
Sbjct: 403 LNAYTRNGSLDLAMHFFET----MPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV 458

Query: 367 TDFSTHVLSY 376
              +  + +Y
Sbjct: 459 ATKTAMMTAY 468



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 46/215 (21%)

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           + + HK G       ++P   +    T +   G++G  E AR +F +M +R+ VSW++++
Sbjct: 153 FVIRHKSGAKNK---ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMI 209

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             YS+     E   LF                      A +G                  
Sbjct: 210 NGYSQNGKVDEARLLFD---------------------AFVG------------------ 230

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           KN+   T ++  Y+K G +  A  VFE ++ ++  +WNAMISG   NGD K + +LFD M
Sbjct: 231 KNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM 290

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            +        ++ +V+T   H   + +   LF+ M
Sbjct: 291 PEKNV----ASWNSVVTGYCHCYRMSEARELFDQM 321


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 251/439 (57%), Gaps = 40/439 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY +  F + +V  +  + +  GFEP+  +   ++ AC  LG LE  G +V   VV+
Sbjct: 189 LLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLE-LGRWVEGFVVE 247

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   + ++ S+L+  YS                               K G+  ++R +
Sbjct: 248 RGMKVNSYIGSALISMYS-------------------------------KCGELVSSRRI 276

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ MP R+ ++W+A ++AY++     E +SLF  M+E G+ PN+  L +VL+ACA +GA+
Sbjct: 277 FDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGAL 336

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +  YA    L+ ++ +ATA++DMY+KCG + SA  VF  +  K+  +WNAMIS +
Sbjct: 337 DLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISAL 396

Query: 240 AMNGDAKKSLELFDRMVKSG--TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           A +G AK++L LF+RM   G   +P + TFV++L+ C HA +V +G  LF+ MS ++G+ 
Sbjct: 397 ASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLV 456

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY+C+VDLL+RAG + EA   I EKM      D    GAL SAC+    +++G RV
Sbjct: 457 PKIEHYSCMVDLLSRAGHLYEAWDVI-EKMP--EKPDNVTLGALHSACQRKKNVDIGERV 513

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L E+  ++   +++S  IY+    WD +A ++R L+ E G+ K PGCS IEV   + 
Sbjct: 514 IQMLLELDPSNSGNYIISSKIYENLNMWD-DAARMRALMRENGVTKTPGCSWIEVGNQLR 572

Query: 417 EFLAGDNRHAQAGEIYRVI 435
           EFL+GD     + ++  +I
Sbjct: 573 EFLSGDGLTLDSIDVRNII 591



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 173/361 (47%), Gaps = 45/361 (12%)

Query: 9   NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV 68
           ++P L++  Y  M  +   PNN+TFP +  AC  L  +       H  V K G   D   
Sbjct: 97  DYP-LTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIR-MARLAHCEVFKLGLDNDHHT 154

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
           V+S++  Y    + G AR +FD+  ++D+V+W +++ GY K+G    A E+F ++ E   
Sbjct: 155 VNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLRE--- 211

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
                                      E G +P+E  LVSVL AC  LG +  G WV  +
Sbjct: 212 ---------------------------ESGFEPDEMSLVSVLGACGELGDLELGRWVEGF 244

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
                ++ N  + +A++ MYSKCG + S+  +F+G+ ++D   WNA IS  A NG A ++
Sbjct: 245 VVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEA 304

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH----YA 304
           + LF  M ++G  P + T  AVL+ C     +  G  + E     Y     L+H      
Sbjct: 305 ISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDE-----YATHRGLQHDIFVAT 359

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            ++D+ A+ G +E A++   +    +   +   W A++SA   +GK +    ++ ++++ 
Sbjct: 360 ALIDMYAKCGSLESAQRVFND----MPRKNDASWNAMISALASHGKAKEALSLFERMSDE 415

Query: 365 G 365
           G
Sbjct: 416 G 416



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 121/260 (46%), Gaps = 8/260 (3%)

Query: 110 MGDFENARELFEKM-PERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGMKPNESGLV 167
           + DF  +  +F  + P  N  +++ ++ A +    D+   L L+ QM+ + + PN     
Sbjct: 62  LKDFTYSTLIFSHITPHPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFP 121

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
            V  ACA+L  I      H    +  L+ +     ++V MY +CG    A  VF+ I+ K
Sbjct: 122 FVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEK 181

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           D  +WN+++SG A  G A++++E+F R+  +SG +P E + V+VL  C     +  G   
Sbjct: 182 DLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELG-RW 240

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
            E      G++      + ++ + ++ G +  + +  +    G+   D   W A +SA  
Sbjct: 241 VEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFD----GMPSRDFITWNAAISAYA 296

Query: 347 IYGKIEVGNRVWRKLAEMGI 366
             G  +    ++  + E G+
Sbjct: 297 QNGMADEAISLFHSMKENGV 316


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 245/440 (55%), Gaps = 8/440 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV--V 58
           MI GY +  F   ++  + +M+ +G EP+ +T   L+ +C  LG ++ FG  VH  +   
Sbjct: 135 MIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVK-FGKAVHGWMERR 193

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K     +  + ++LL+ Y    K+  A   F    ++D+V+W  +V G  K+G+ E AR 
Sbjct: 194 KPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARL 253

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
            F +MP R+ VSW++++  Y+   DF  V  L   M    + P+   ++S+++A    GA
Sbjct: 254 FFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGA 313

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG W H +  R  ++ +  L +A++DMY KCG +  A  VF+ I+ KD   W  MI+G
Sbjct: 314 LDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITG 373

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G   K+LELF  M +    P + TFV+VL+ C+H+ +V  G+ +F +M+  YG+EP
Sbjct: 374 LAFHGYGSKALELFSEM-QEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTD-YGIEP 431

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C+VDLLAR+G + EA+  I++          ++WGA+L+AC+  G +E+     
Sbjct: 432 GVEHYGCLVDLLARSGRLSEAKDIIDQMP---MKPSRSIWGAMLNACQAQGDVELAEIAS 488

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           R+L  +   +   + L  NIY  +G    + K+R+ +   G+KK  GCS + V+GVV  F
Sbjct: 489 RELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHNF 548

Query: 419 LAGDNRHAQAGEIYRVIHSF 438
           ++ D  H    +I  +++  
Sbjct: 549 ISADKCHPGWVDISSILNCL 568



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 106/471 (22%), Positives = 203/471 (43%), Gaps = 64/471 (13%)

Query: 8   ANFPKLSVFCYLDMLDMGF--------EPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           + F   S   + D LD+           PN + +  LI A   L  +E+F    + + V 
Sbjct: 2   SRFIYFSAVSHPDNLDLAITLFNHFTPNPNLFIYNTLISAFSSLKKIESF----YLYNVL 57

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTW----TTMVDGYGKMGDFEN 115
              GE P    +LL     V+ +   + +  ++    + ++     T++  Y + G    
Sbjct: 58  LSSGECP-DKQTLLYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRL 116

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ++FEKMP  + VS++ ++  Y++     E + LF +M  +G++P+E  ++ +L +C  
Sbjct: 117 AHQVFEKMPSPDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQ 176

Query: 176 LGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD----- 228
           LG +  G  VH + +R    +  N+IL  A++DMY KC  V  AL  F  +  KD     
Sbjct: 177 LGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWN 236

Query: 229 ---AG-----------------------AWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
              AG                       +WN++++G A  GD     EL   MV     P
Sbjct: 237 MIVAGCAKVGELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIP 296

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAE 320
              T +++++  T +  +  G         V  ++ +L+ +  + ++D+  + G +E A 
Sbjct: 297 DTVTMISLVSAATESGALDQGR---WAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERAS 353

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           +  +E    +   D  VW  +++    +G       ++ ++ E    D  T V   +   
Sbjct: 354 RVFKE----INKKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDVTFVSVLSACS 409

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
            +G   +  KV   +++ G+  +PG   +E  G + + LA   R ++A +I
Sbjct: 410 HSGLVDQGIKVFSSMTDYGI--EPG---VEHYGCLVDLLARSGRLSEAKDI 455


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/415 (36%), Positives = 221/415 (53%), Gaps = 38/415 (9%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+ +TF  ++KAC  L  + N G  +HA V K GF  + FV +SL               
Sbjct: 90  PDEFTFTSVLKACAGLAHVVN-GQKIHAMVTKQGFESNLFVRNSL--------------- 133

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM--PERNAVSWSAIMAAYSRISDFK 145
                           +D Y K G    AR LF++M   +RN V W+A++A Y++   + 
Sbjct: 134 ----------------IDMYFKAGYLLLARHLFDEMFVRDRNVVCWNAMIAGYAQNEKYS 177

Query: 146 EVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           + + +FR MQ+ G + PN+  LVSVL ACAHLGA+  G W+  +  R  +   + L  A+
Sbjct: 178 DAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALGLFLGNAL 237

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
            DMY+KCG +  A  VF  +  +D  +W+ +I G+AM G A ++   F  M+  G +P +
Sbjct: 238 ADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPND 297

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
             F+ +LT CTHA +V+ GLN F  M   YGV P++EHY CVVDLL+RAG +++AE  I 
Sbjct: 298 VVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMIS 357

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
                    +  +WGALL  CRIY     G RV + + E+      ++V   N+Y   G 
Sbjct: 358 SMP---MKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGR 414

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
             +A K R  + E G+ K PGCS IEV+  V EF  GD  H ++ +IY +I   +
Sbjct: 415 LDDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELM 469



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 109/260 (41%), Gaps = 35/260 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q      ++  +  M   G   PN+ T   ++ AC  LG L+  G ++   + +
Sbjct: 166 MIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALD-LGKWIDGFISR 224

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                  F+ ++L + Y+    +  AR +F+K  +RDV++W+ ++ G    G  +     
Sbjct: 225 REMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHAD----- 279

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                     E    F +M + G KPN+   + +LTAC H G +
Sbjct: 280 --------------------------EAFGCFYEMLDCGEKPNDVVFMGLLTACTHAGLV 313

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMIS 237
            +GL   ++  K Y +   V     VVD+ S+ G +  A  +   +  K +   W A++ 
Sbjct: 314 KKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMKPNVIIWGALLG 373

Query: 238 GVAMNGDAKKSLELFDRMVK 257
           G  +  D+ +   +   +++
Sbjct: 374 GCRIYRDSGRGQRVVQHILE 393


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 146/444 (32%), Positives = 245/444 (55%), Gaps = 11/444 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q      +++ + ++   G + N ++F  L+ ACV    L+      H  V+  
Sbjct: 150 MVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTACVKSRQLQ-LNQQAHGQVLVA 208

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  +  S+++ Y+   +M +A+  FD+   +D+  WTT++ GY K+GD E A +LF
Sbjct: 209 GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLF 268

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPE+N VSW+A++A Y R       L LFR+M  + +KP +    S L A A + ++ 
Sbjct: 269 REMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLR 328

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGV 239
            G  +H Y  R ++  N I+ ++++DMYSK G + ++  VF    +K D   WN MIS +
Sbjct: 329 HGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASERVFRICYDKQDCVLWNTMISAL 388

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G   K+L++ D M+K    P  TT V +L  C+H+ +V +G+  FE+M+  +G+ P 
Sbjct: 389 AQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPD 448

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHYAC++DLL RAG  +E    IEE        D ++W A+L  CRI+G  E+G +   
Sbjct: 449 QEHYACLIDLLGRAGCFKELMSKIEEMP---FEPDKHIWNAILGVCRIHGNEELGKKAAE 505

Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +L ++     + ++L  +IY + G W++   K+R ++ +  + K+   S IE+   V+ F
Sbjct: 506 ELIKLDPESSAPYILLSSIYADHGKWEL-VEKLRGIMKKRRVNKEKAVSWIEIENKVKAF 564

Query: 419 LAGDNRHAQAG----EIYRVIHSF 438
              D  HA A     EIY ++H+ 
Sbjct: 565 TVSDGSHAHAHARKEEIYFILHNL 588



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 156/347 (44%), Gaps = 39/347 (11%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSS-LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG 108
           G ++H H+   GF     ++S+ L+  Y    K   A  +FD+   R++ +W  MV G+ 
Sbjct: 65  GKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFV 124

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           K G    AR +F+ MPER+ VSW+ ++  Y++  +  E L  F++++  G+K NE     
Sbjct: 125 KSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAG 184

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +LTAC     +      H          NV+L+ +++D Y+KCG + SA   F+ ++ KD
Sbjct: 185 LLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244

Query: 229 AGAWNAMISGVAMNGDAKK-------------------------------SLELFDRMVK 257
              W  +ISG A  GD +                                +L+LF +M+ 
Sbjct: 245 IHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIA 304

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +P + TF + L        +R G  +   M     V P     + ++D+ +++G +E
Sbjct: 305 MRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRT-NVRPNAIVTSSLIDMYSKSGSLE 363

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            +E+            D  +W  ++SA   +G   +G++  + L +M
Sbjct: 364 ASERVFR---ICYDKQDCVLWNTMISALAQHG---LGHKALQMLDDM 404


>gi|41469497|gb|AAS07282.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 476

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/422 (36%), Positives = 225/422 (53%), Gaps = 7/422 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IR       P  +V  ++DML     P   TFP L  A   LG   + G  +H  VVK G
Sbjct: 59  IRALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGD-GAGLHGMVVKLG 117

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
            G D +V +S++  Y+       A AL  +    D V   + +    + G  + AR +F+
Sbjct: 118 LGGDAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFD 177

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            MP R   +WSA+++AYSR S   + + LF  MQ  G++PN + LVSVL  CA LGA+ Q
Sbjct: 178 GMPARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQ 237

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMISG 238
           G WVH+Y  ++ +  N ++ TA+VDMY KCG +  A  VF+   ++      +WN+M+ G
Sbjct: 238 GAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLG 297

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A++G  +++  LF  +   G +P   TF+A+L    H+ M  +   +  +M++ +GV P
Sbjct: 298 HAVHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGVVP 357

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C+VD LARAG + EAE  I          DA VWGALLS CR++G  E   R  
Sbjct: 358 GVEHYGCLVDALARAGRLREAEGAIAAMPVAP---DAAVWGALLSGCRLHGDAEAAARAA 414

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           R+       D   +VL+ +     G       VR  + E G+ K PGCS+IEV+GVV EF
Sbjct: 415 REAVRCDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGVVHEF 474

Query: 419 LA 420
           ++
Sbjct: 475 VS 476



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 13/230 (5%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT-ARALFDKSPDRDVVTWTTMVDGYGKMG 111
           +HA +VK G   DP   S  + F +   +    A  L    P  +   W T +       
Sbjct: 7   LHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIRALADGP 66

Query: 112 DFENARELFEKM------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
               A  LF  M      PER   ++ ++ AAY+R+    +   L   + ++G+  +   
Sbjct: 67  GPGAAVALFVDMLGSPTPPERR--TFPSLFAAYARLGRAGDGAGLHGMVVKLGLGGDAYV 124

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
             SV+   A  GA  + + + +  + +    + +   + +   ++ G V  A +VF+G+ 
Sbjct: 125 RNSVIAMYASRGAADEAIALLARCEAF----DAVACNSAIVALARAGRVDEARAVFDGMP 180

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            +    W+AM+S  + +     ++ELF  M   G +P     V+VL  C 
Sbjct: 181 ARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCA 230


>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
 gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
          Length = 565

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 154/414 (37%), Positives = 236/414 (57%), Gaps = 45/414 (10%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+ +T+P ++KAC  L  L   G  VHAHV+K GF  D ++ +SL+ FY+          
Sbjct: 83  PDKHTYPFVLKACAYLFSLFE-GKQVHAHVLKLGFELDTYICNSLIHFYA---------- 131

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE-RNAVSWSAIMAAYSRISDFKE 146
                                  G  E AR++F++M E RN VSW+ ++ +Y+++ D+  
Sbjct: 132 ---------------------SCGYLETARKVFDRMCEWRNVVSWNVMIDSYAKVGDYDI 170

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI----LAT 202
           VL +F +M +V  +P+   + SV+ AC  LG+++ G+WVH++  +   +KNV+    + T
Sbjct: 171 VLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLK-KCDKNVVCDVLVNT 228

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQ 261
            +VDMY KCG +  A  VFEG+S +D  +WN++I G A++G AK +L+ F RMVK     
Sbjct: 229 CLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIV 288

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   TFV VL+ C H+ MV +GL  FE M+  Y VEP L HY C+VDL ARAG ++EA  
Sbjct: 289 PNSITFVGVLSACNHSGMVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALN 348

Query: 322 FIEEKMGGLGGGDANVWGALLSAC-RIYGKIEVGNRVWRKLAEM-GITDFSTHVLSYNIY 379
            + E        DA +W +LL AC + +  +E+   + +++ E  G      +VL   +Y
Sbjct: 349 VVSEMP---IKPDAVIWRSLLDACYKQHASVELSEEMAKQIFESNGSVCGGAYVLLSKVY 405

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
             A    +   +RKL+++ G+ KKPGCS+IE+NG   EF AGD  H Q+ +IY+
Sbjct: 406 ASASRWNDVGLLRKLMNDKGVSKKPGCSLIEINGAAHEFFAGDTNHPQSKDIYK 459



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 119/262 (45%), Gaps = 40/262 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y +     + +  + +M+ + +EP+ YT   +I+AC  LG L + GM+VHA V+K 
Sbjct: 158 MIDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSL-SLGMWVHAFVLKK 215

Query: 61  GFGE---DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
                  D  V + L++ Y     +  A+ +F+    RDV +W +++ G+   G  + A 
Sbjct: 216 CDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMSYRDVSSWNSIILGFAVHGKAKAAL 275

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + F +M +   +                               PN    V VL+AC H G
Sbjct: 276 DYFVRMVKVEKIV------------------------------PNSITFVGVLSACNHSG 305

Query: 178 AITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAM 235
            + +GL +     K Y++E +++    +VD+Y++ GH+  AL+V   +  K DA  W ++
Sbjct: 306 MVDEGLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIKPDAVIWRSL 365

Query: 236 ISGVAMNGDAKKSLELFDRMVK 257
           +           S+EL + M K
Sbjct: 366 LDACY---KQHASVELSEEMAK 384



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 117/240 (48%), Gaps = 12/240 (5%)

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKE-VLSLFRQM---QEVGMKPNESGLVSVLTAC 173
           ++   +   N+ +W+ ++ +YS+ +  K+  + L++ +   QE  + P++     VL AC
Sbjct: 36  QILRTIHTPNSFTWNILIQSYSKSTLHKQKAILLYKAIITEQENELFPDKHTYPFVLKAC 95

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAW 232
           A+L ++ +G  VH++  +   E +  +  +++  Y+ CG++ +A  VF+ +   ++  +W
Sbjct: 96  AYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVFDRMCEWRNVVSW 155

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL--NLFENM 290
           N MI   A  GD    L +F  M+K   +P   T  +V+  C     +  G+  + F   
Sbjct: 156 NVMIDSYAKVGDYDIVLIMFCEMMKV-YEPDCYTMQSVIRACGGLGSLSLGMWVHAFVLK 214

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                V   +    C+VD+  + G +E A++  E    G+   D + W +++    ++GK
Sbjct: 215 KCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFE----GMSYRDVSSWNSIILGFAVHGK 270


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 243/437 (55%), Gaps = 37/437 (8%)

Query: 1   MIRGYMQANFPKLSVFC-YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IR Y Q    K      Y  ML     PN +T+P ++KAC  L  L N G  VH  VVK
Sbjct: 102 LIRAYAQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVL-NLGQTVHGSVVK 160

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FGF  D  V ++++  YS                                 G   +AR++
Sbjct: 161 FGFDCDIHVQNTMVHMYSCC------------------------------AGGINSARKV 190

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP+ ++V+WSA++  Y+R+    E ++LFR+MQ   + P+E  +VS+L+AC  LGA+
Sbjct: 191 FDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGAL 250

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G W+ +Y +R+ + K V ++ A++DM++KCG +  AL +F  ++ K   +W ++I G+
Sbjct: 251 ELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGM 310

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G  +++  LF+ M  SG  P +  F+ +L+ C+H+ +V  G   F +M   Y + P+
Sbjct: 311 AMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPK 370

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VD+  R G+V+EA +F+          +  +   L+SACR +G+ ++G ++ +
Sbjct: 371 IEHYGCMVDMYCRTGLVKEALEFVRNMP---IEPNPVILRTLVSACRGHGEFKLGEKITK 427

Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
            L +      S +VL  NIY K   W+ +  K+R+++   GMKK PG ++IE++  + EF
Sbjct: 428 LLMKHEPLHESNYVLLSNIYAKTLSWE-KKTKIREVMEVKGMKKVPGSTMIEIDNEIYEF 486

Query: 419 LAGDNRHAQAGEIYRVI 435
           +AGD  H Q  EIY ++
Sbjct: 487 VAGDKSHKQHKEIYEMV 503


>gi|326496937|dbj|BAJ98495.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 491

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/427 (35%), Positives = 235/427 (55%), Gaps = 55/427 (12%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           D L + F  ++ T  P +    +L          H+  V+ G   D +V+S+ +  Y   
Sbjct: 71  DHLSLSFSLHSCTRSPSLPVASLL----------HSFAVRLGHARDVYVLSAAVSAYFRA 120

Query: 80  HKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
             + +A  LF  + D  DVVTWTTMV G+   GD E AR  F+ MPERN VSW+A++ AY
Sbjct: 121 TDVASAERLFSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNVVSWNAMLGAY 180

Query: 139 S-------------------------------RISDFKEVLSLFRQMQEVGMKPNESGLV 167
           +                               R +  +E L +F +M  +G+ PNES LV
Sbjct: 181 ASAGMLSKARKLFDIMPSRNAASWSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALV 240

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           S ++AC+ L ++  G+WVH+YAKR     +++LATA+VDMY KCG +H+A+ VF  +  K
Sbjct: 241 SAVSACSLLRSLEHGVWVHAYAKRELQGMSLVLATAIVDMYGKCGGIHNAVRVFAAMPVK 300

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           +  +WN+MI+G+AMNG   ++L LF +M  +G +P + TF+ +L  C+H+ +V +G  LF
Sbjct: 301 NIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVDEGRWLF 360

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE----EKMGGLGGGDANVWGALLS 343
             M   +G++P  EHY  +VDLL RAG V EA  F+     E   GL       WGAL  
Sbjct: 361 NMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGL-------WGALAG 413

Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKK 402
           AC+I+G++E+G  + +KL E+     S ++L  NIY  +  WD +   VR+L+ +  + K
Sbjct: 414 ACKIHGEVELGEEIAKKLIELEPRHGSRYILLSNIYGASNRWD-DMATVRRLLKDRKVPK 472

Query: 403 KPGCSVI 409
             G +++
Sbjct: 473 GTGNAMV 479



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 41/263 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G +++N  + ++  + +M+ MG  PN       + AC +L  LE+ G++VHA+  + 
Sbjct: 207 MVTGLVRSNRCEEALRVFSEMIGMGVVPNESALVSAVSACSLLRSLEH-GVWVHAYAKRE 265

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                       L+  SLV                     T +VD YGK G   NA  +F
Sbjct: 266 ------------LQGMSLVLA-------------------TAIVDMYGKCGGIHNAVRVF 294

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP +N  SW++++   +      + LSLF +MQ  G++PN+   + +L AC+H G + 
Sbjct: 295 AAMPVKNIYSWNSMITGLAMNGREMQALSLFWKMQMAGVRPNDITFIGLLGACSHSGLVD 354

Query: 181 QGLWVHS-YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G W+ +     + ++        +VD+  + GHV  A+     +      G W A+   
Sbjct: 355 EGRWLFNMMVNGFGIQPVQEHYGLMVDLLGRAGHVREAVDFVNSMPVEPHPGLWGALAGA 414

Query: 239 VAMNGD-------AKKSLELFDR 254
             ++G+       AKK +EL  R
Sbjct: 415 CKIHGEVELGEEIAKKLIELEPR 437



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   L   L +C    ++     +HS+A R    ++V + +A V  Y +   V SA  +
Sbjct: 70  PDHLSLSFSLHSCTRSPSLPVASLLHSFAVRLGHARDVYVLSAAVSAYFRATDVASAERL 129

Query: 221 FEGISN-KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279
           F    +  D   W  M++G A  GD +++   FD M +        ++ A+L     A M
Sbjct: 130 FSYTKDVADVVTWTTMVTGHANTGDLERARWFFDAMPERNV----VSWNAMLGAYASAGM 185

Query: 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG-GLGGGDANVW 338
           +     LF+ M +          ++ +V  L R+   EEA +   E +G G+   ++ + 
Sbjct: 186 LSKARKLFDIMPSRNAAS-----WSSMVTGLVRSNRCEEALRVFSEMIGMGVVPNESALV 240

Query: 339 GALLSACRIYGKIEVGNRVW 358
            A +SAC +   +E G  VW
Sbjct: 241 SA-VSACSLLRSLEHG--VW 257


>gi|108709982|gb|ABF97777.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 523

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 153/422 (36%), Positives = 225/422 (53%), Gaps = 7/422 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IR       P  +V  ++DML     P   TFP L  A   LG   + G  +H  VVK G
Sbjct: 106 IRALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGD-GAGLHGMVVKLG 164

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
            G D +V +S++  Y+       A AL  +    D V   + +    + G  + AR +F+
Sbjct: 165 LGGDAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFD 224

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            MP R   +WSA+++AYSR S   + + LF  MQ  G++PN + LVSVL  CA LGA+ Q
Sbjct: 225 GMPARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQ 284

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMISG 238
           G WVH+Y  ++ +  N ++ TA+VDMY KCG +  A  VF+   ++      +WN+M+ G
Sbjct: 285 GAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLG 344

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A++G  +++  LF  +   G +P   TF+A+L    H+ M  +   +  +M++ +GV P
Sbjct: 345 HAVHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGVVP 404

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C+VD LARAG + EAE  I          DA VWGALLS CR++G  E   R  
Sbjct: 405 GVEHYGCLVDALARAGRLREAEGAIAAMPVAP---DAAVWGALLSGCRLHGDAEAAARAA 461

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           R+       D   +VL+ +     G       VR  + E G+ K PGCS+IEV+GVV EF
Sbjct: 462 REAVRCDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGVVHEF 521

Query: 419 LA 420
           ++
Sbjct: 522 VS 523



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 153/381 (40%), Gaps = 22/381 (5%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK-MGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           +HA +VK G   DP   S  + F +   +    A  L    P  +   W T +       
Sbjct: 54  LHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIRALADGP 113

Query: 112 DFENARELFEKM------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
               A  LF  M      PER   ++ ++ AAY+R+    +   L   + ++G+  +   
Sbjct: 114 GPGAAVALFVDMLGSPTPPERR--TFPSLFAAYARLGRAGDGAGLHGMVVKLGLGGDAYV 171

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
             SV+   A  GA  + + + +  + +    + +   + +   ++ G V  A +VF+G+ 
Sbjct: 172 RNSVIAMYASRGAADEAIALLARCEAF----DAVACNSAIVALARAGRVDEARAVFDGMP 227

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
            +    W+AM+S  + +     ++ELF  M   G +P     V+VL  C     +  G  
Sbjct: 228 ARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGAW 287

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
           +   +   + V         +VD+  + G + +A +  +      G    + W +++   
Sbjct: 288 VHAYIDK-HDVAMNALVVTALVDMYCKCGDIRKAREVFDASR-SRGQAKLSSWNSMMLGH 345

Query: 346 RIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV-RKLISETGMKKK 403
            ++G+      ++ +L   G+  D  T +     Y  +G   EA  V   + SE G+   
Sbjct: 346 AVHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGV--V 403

Query: 404 PGCSVIEVNGVVEEFLAGDNR 424
           PG   +E  G + + LA   R
Sbjct: 404 PG---VEHYGCLVDALARAGR 421


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/426 (33%), Positives = 231/426 (54%), Gaps = 35/426 (8%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++  + +ML  G +P+++T+  ++KAC  L  LE +G+ VH  V+K G G D FV S   
Sbjct: 436 TILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE-YGLMVHDKVIKSGLGSDAFVAS--- 491

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
                                       T+VD Y K G  + A++L +++  +  VSW+A
Sbjct: 492 ----------------------------TVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNA 523

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           I++ +S   + +E    F +M ++G+KP+     +VL  CA+L  I  G  +H    +  
Sbjct: 524 ILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE 583

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +  +  +++ +VDMY+KCG +  +L VFE +  +D  +WNAMI G A++G   ++L +F+
Sbjct: 584 MLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFE 643

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           RM K    P   TFVAVL  C+H  +  DG   F  M+  Y +EPQLEH+AC+VD+L R+
Sbjct: 644 RMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRS 703

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
              +EA KFI          DA +W  LLS C+I   +E+       +  +   D S ++
Sbjct: 704 KGPQEAVKFINSMP---FQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYI 760

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y E+G   + ++ R+L+ +  +KK+PGCS IEV   +  FL GD  H ++GE+Y 
Sbjct: 761 LLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYE 820

Query: 434 VIHSFL 439
           +++  +
Sbjct: 821 MLNDLI 826



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 133/260 (51%), Gaps = 1/260 (0%)

Query: 28  PNNYTFPPLIKACVILG-PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           P   TF  + ++C   G      G   HA +V  GF  + FV + LL+ Y+       AR
Sbjct: 13  PARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACAR 72

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD  P RD V+W TM+  Y   GD   A  LF+ MP+ + VSW+A+++ Y +   F+E
Sbjct: 73  RVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQE 132

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            + LF +M   G+ P+ +    +L +C+ L  ++ G+ VH+ A +  LE +V   +A+VD
Sbjct: 133 SVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVD 192

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY KC  +  AL  F G+  ++  +W A I+G   N    + LELF  M + G   ++ +
Sbjct: 193 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 252

Query: 267 FVAVLTTCTHAKMVRDGLNL 286
           + +   +C     +  G  L
Sbjct: 253 YASAFRSCAAMSCLNTGRQL 272



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 105/190 (55%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D D+     ++D YGK      A  +F+ M ++++VSW+AI+AA  +   + + +  F +
Sbjct: 383 DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNE 442

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M   GMKP++    SVL ACA L ++  GL VH    +  L  +  +A+ VVDMY KCG 
Sbjct: 443 MLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 502

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  + + I  +   +WNA++SG ++N +++++ + F  M+  G +P   TF  VL T
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 274 CTHAKMVRDG 283
           C +   +  G
Sbjct: 563 CANLATIELG 572



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 37/349 (10%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +++M  +G   +  ++    ++C  +  L N G  +HAH +K  F               
Sbjct: 238 FIEMQRLGLGVSQPSYASAFRSCAAMSCL-NTGRQLHAHAIKNKF--------------- 281

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                         S DR  V  T +VD Y K     +AR  F  +P     + +A+M  
Sbjct: 282 --------------SSDR--VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             R     E + LF+ M    ++ +   L  V +ACA      QG  VH  A +   + +
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +  AV+D+Y KC  +  A  +F+G+  KD+ +WNA+I+ +  NG    ++  F+ M++
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + T+ +VL  C   + +  GL + + +    G+       + VVD+  + G+++
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMYCKCGIID 504

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           EA+K  +     +GG     W A+LS   +  + E   + + ++ +MG+
Sbjct: 505 EAQKLHDR----IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGL 549



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 151/344 (43%), Gaps = 37/344 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q    + SV  +++M   G  P+  TF  L+K+C  L  L + G+ VHA  VK 
Sbjct: 120 LVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEEL-SLGVQVHALAVKT 178

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                + DV T + +VD YGK    ++A   F
Sbjct: 179 GL-------------------------------EIDVRTGSALVDMYGKCRSLDDALCFF 207

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPERN VSW A +A   +   +   L LF +MQ +G+  ++    S   +CA +  + 
Sbjct: 208 YGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLN 267

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H++A +     + ++ TA+VD+Y+K   +  A   F G+ N      NAM+ G+ 
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 327

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G   +++ LF  M++S  +    +   V + C   K    G  +   ++   G +  +
Sbjct: 328 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQV-HCLAIKSGFDVDI 386

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
                V+DL  +   + EA    +    G+   D+  W A+++A
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQ----GMKQKDSVSWNAIIAA 426


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/323 (38%), Positives = 210/323 (65%), Gaps = 8/323 (2%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR +FD+ P R++V+W  M+ GY    D + ARELF+ MPE++ VSW+ +++ Y++   +
Sbjct: 245 ARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRY 304

Query: 145 KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILA 201
           ++ L LFR MQ E  ++PNE  +VSVL+ACA+L A+ +G WVH++  ++   L     L 
Sbjct: 305 QDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLG 364

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            A++DMY+KCG    A+ +F  +  K+  AWNA+I+ +AMNG+A+ S++ F++M ++G +
Sbjct: 365 AALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEK 424

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P + TFV VLT C+H  +V +G   F++M++  GV+P+++HY C+VD+L RAG++EEAE+
Sbjct: 425 PNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEE 484

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST--HVLSYNIY 379
            I          D  V+GALL ACR++ + +V  RV  ++  + +    +  HVL  +IY
Sbjct: 485 LIRSMP---MAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 541

Query: 380 KEAGWDMEANKVRKLISETGMKK 402
             AG   +  + R+++  +G++K
Sbjct: 542 AAAGKWFDVLEARQVVQRSGIRK 564



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/357 (29%), Positives = 168/357 (47%), Gaps = 23/357 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR    +  P LS   +  +L  G  P+ +T PPL+ +   L      G  VHA  V+ 
Sbjct: 65  LIRASASSASPGLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRR 124

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENAREL 119
           GF  D FVV++LL  Y  +    + R +F       DVV+W T++ GY K G+ E+A+ +
Sbjct: 125 GFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRV 184

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP RN VSWS ++  Y+   +      +F +M  +G   N     S++T  A  G +
Sbjct: 185 FDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGR--NVVTWNSMVTGFARHGLL 242

Query: 180 TQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
                    A++   E   +N++   A++  YS    +  A  +F+ +  KD  +W  MI
Sbjct: 243 -------PLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMI 295

Query: 237 SGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDGL---NLFENMSA 292
           SG A  G  + +LELF  M  +S  QP E T V+VL+ C +   + +G       +    
Sbjct: 296 SGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKM 355

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           V   E  L   A ++D+ A+ G  + A K        L   + + W AL++   + G
Sbjct: 356 VLNNEYNLG--AALIDMYAKCGRTDIAVKIFNS----LDRKNVSAWNALITRLAMNG 406



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 36/221 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY QA   + ++  +  M  +   +PN  T   ++ AC  L  LE  G +VHA + K
Sbjct: 294 MISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEE-GRWVHAFIDK 352

Query: 60  FG--FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
                  +  + ++L++ Y+   +   A  +F+    ++V  W  ++      G+  ++ 
Sbjct: 353 HKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSV 412

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + FE                               QM+  G KPN+   V VLTAC+H G
Sbjct: 413 DAFE-------------------------------QMKRTGEKPNDITFVGVLTACSHGG 441

Query: 178 AITQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
            + +G     S A    ++  V     +VDM  + G +  A
Sbjct: 442 LVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEA 482


>gi|225437951|ref|XP_002269187.1| PREDICTED: pentatricopeptide repeat-containing protein At1g32415,
           mitochondrial-like [Vitis vinifera]
          Length = 743

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/473 (32%), Positives = 252/473 (53%), Gaps = 43/473 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV- 58
           MI G+    F K ++  +L+M  +   +PN+ TF  L  AC  +G   + GM  HAH++ 
Sbjct: 268 MIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIG-FPHLGMQFHAHLII 326

Query: 59  ---------------------KFGFGEDPFVV-------------SSLLEFYSLVHKMGT 84
                                 FGF +  + +             +S++  Y  + ++  
Sbjct: 327 NCWDYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEK 386

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A++LFD  P RD ++WT+M++GY  +G    A  LF  MP+R+AV+W+ +++ + +   F
Sbjct: 387 AQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELF 446

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E   LF +M+  G+ P  S    +L A   +  + QG   H    +   E ++IL  ++
Sbjct: 447 AEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLLMKTQFEFDLILQNSL 506

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           + MY+KCG +  A S+F  + ++D  +WN+MI G + +G   ++L++F+ M+ SGT P  
Sbjct: 507 ISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVFEAMLTSGTHPNS 566

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+ +L+ C+HA ++  G  LF+ MS V+ ++PQLEHY C+V+LL RAG VEEAE+FI 
Sbjct: 567 VTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFIS 626

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVG--NRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           +        D  +WGALL  C  +G I  G   R  ++L E+   +   HV+  NI+   
Sbjct: 627 KLP---FEPDLTIWGALLGVCG-FGMINTGVARRAAKRLLELDPLNAPAHVVLCNIHASI 682

Query: 383 GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           G   E  ++RK +   G++K PGCS I + G    FL+GD  H QA E+  ++
Sbjct: 683 GQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQADEMLSLL 735



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 45/285 (15%)

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y+   +M  AR LFD   DR+VVTWT+M+ GY + G+ +    LF+KMPERN VSW+A++
Sbjct: 210 YAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMI 269

Query: 136 AAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGL----------W 184
             ++    +KE L LF +M+    MKPN+   +S+  ACA +G    G+          W
Sbjct: 270 GGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACAGIGFPHLGMQFHAHLIINCW 329

Query: 185 -------------VHSYAK------------RYHLEKNVILATAVVDMYSKCGHVHSALS 219
                        +H Y+             R  +  N     ++++ Y + G +  A S
Sbjct: 330 DYDDYDGRLFKSLIHMYSMFGFMDFAWYIFFRNSMSYNTQSCNSMINGYIRIGQLEKAQS 389

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK- 278
           +F+ I  +D  +W +MI+G    G   K+  LF+ M      P        +    H + 
Sbjct: 390 LFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNM------PDRDAVAWTVMVSGHVQN 443

Query: 279 -MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            +  +   LF  M  V GV P    ++ ++        +++  +F
Sbjct: 444 ELFAEATYLFSEMR-VKGVSPLNSTFSILLGAAGAMAYLDQGRQF 487



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 24/230 (10%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SLL  +S    +  ARALF+  P+R+VVT+  M+ GY + G   +A   FE+MPERN V
Sbjct: 80  TSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVV 139

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA---------HLGAIT 180
           SW++++   +      E   LF  M E  +    S LV ++ +            +   +
Sbjct: 140 SWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKS 199

Query: 181 QGLW---VHSYAKRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           Q  W   +  YA+   +E           +NV+  T+++  Y + G+V     +F+ +  
Sbjct: 200 QVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPE 259

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCT 275
           ++  +W AMI G A NG  K++L LF  M  +   +P + TF+++   C 
Sbjct: 260 RNVVSWTAMIGGFAWNGFYKEALLLFLEMKGNYDMKPNDETFISLAYACA 309



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 17/228 (7%)

Query: 67  FVVSSLLEFYSLVHKMGTARALFDKSPDR----DVVTWTTMVDGYGKMGDFENARELFEK 122
           F  S +LE  S   ++  AR + D+ P+R     VV WT+++  + K G  + AR LFE 
Sbjct: 43  FDDSQILECLS-QQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEI 101

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MPERN V+++A+++ Y +     +    F +M E     N     S+L   A+ G I + 
Sbjct: 102 MPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE----RNVVSWTSLLCGLANAGRIGEA 157

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             + +       E+NV+   +++    + G +  A  VF  +  K   +WN MI+G A +
Sbjct: 158 RELFNVMP----ERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEH 213

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
              +++  LFD M          T+ ++++    A  V++G  LF+ M
Sbjct: 214 SRMEEARVLFDGMGDRNV----VTWTSMISGYCRAGNVQEGYCLFQKM 257


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/480 (32%), Positives = 251/480 (52%), Gaps = 48/480 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVI-LGPLENFGMFVHAHVVK 59
           M+R Y  A     ++  Y+ M  MG   NN+T+P ++K C   LG +  FG  VH  VV+
Sbjct: 103 MLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAV--FGEVVHGQVVR 160

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY------------ 107
            GFG D FV ++L++ Y+   ++G A  +FD+   RDVV WT M+  Y            
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALML 220

Query: 108 -----------------------GKMGD----FENARELFEKMPERNAVSWSAIMAAYSR 140
                                  G++GD       AR +F++M ERN +SW+++++ Y++
Sbjct: 221 FRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQ 280

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
                + LSLF QMQ     PN    + +++AC++LG+   G  +H++     ++ +  L
Sbjct: 281 NGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTL 340

Query: 201 ATAVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
             A++DMY KCG + +A+ +F    +  +D  +WN +ISG  ++G  K++LELF RM   
Sbjct: 341 RNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVE 400

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G +P + TF ++L+ C+HA ++ +G   F +M+ +  V P+++HYAC+VD+L RAG + E
Sbjct: 401 GVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNE 459

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           A + I +K+      +  VWGALL ACRI+G  E+G      L ++       +VL  NI
Sbjct: 460 AFRLI-KKIPSRPSDE--VWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNI 516

Query: 379 YKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           Y  +    E   VR+ +   G+KK    SVIE    V  F   D       E+YR + S 
Sbjct: 517 YAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESL 576



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 14/202 (6%)

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER--------NAV 129
           L+H   + R     +P         ++  Y K+GD  +AR LF+             N+ 
Sbjct: 43  LIHSSLSTRGFLLHTPH----FLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSF 98

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA-HLGAITQGLWVHSY 188
             + ++ AY+      E + L+  MQ +G+  N      VL  CA  LGA+  G  VH  
Sbjct: 99  LCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVF-GEVVHGQ 157

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             R     ++ +  A+VDMY+KCG +  A  VF+ +  +D   W AMI+         K+
Sbjct: 158 VVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKA 217

Query: 249 LELFDRMVKSGTQPTETTFVAV 270
           L LF +M + G    E T ++V
Sbjct: 218 LMLFRKMQEEGFLGDEITAISV 239


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/426 (33%), Positives = 231/426 (54%), Gaps = 35/426 (8%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++  + +ML  G +P+++T+  ++KAC  L  LE +G+ VH  V+K G G D FV S   
Sbjct: 436 TILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE-YGLMVHDKVIKSGLGSDAFVAS--- 491

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
                                       T+VD Y K G  + A++L +++  +  VSW+A
Sbjct: 492 ----------------------------TVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNA 523

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           I++ +S   + +E    F +M ++G+KP+     +VL  CA+L  I  G  +H    +  
Sbjct: 524 ILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE 583

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +  +  +++ +VDMY+KCG +  +L VFE +  +D  +WNAMI G A++G   ++L +F+
Sbjct: 584 MLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFE 643

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           RM K    P   TFVAVL  C+H  +  DG   F  M+  Y +EPQLEH+AC+VD+L R+
Sbjct: 644 RMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRS 703

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
              +EA KFI          DA +W  LLS C+I   +E+       +  +   D S ++
Sbjct: 704 KGPQEAVKFINSMP---FQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYI 760

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y E+G   + ++ R+L+ +  +KK+PGCS IEV   +  FL GD  H ++GE+Y 
Sbjct: 761 LLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYE 820

Query: 434 VIHSFL 439
           +++  +
Sbjct: 821 MLNDLI 826



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 1/260 (0%)

Query: 28  PNNYTFPPLIKACVILG-PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           P   TF  + ++C   G      G   HA +V  GF    FV + LL+ Y+       AR
Sbjct: 13  PARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACAR 72

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD  P RD V+W TM+  Y   GD   A  LF+ MP+ + VSW+A+++ Y +   F+E
Sbjct: 73  RVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQE 132

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            + LF +M   G+ P+ +    +L +C+ L  ++ G+ VH+ A +  LE +V   +A+VD
Sbjct: 133 SVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVD 192

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY KC  +  AL  F G+  ++  +W A I+G   N    + LELF  M + G   ++ +
Sbjct: 193 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 252

Query: 267 FVAVLTTCTHAKMVRDGLNL 286
           + +   +C     +  G  L
Sbjct: 253 YASAFRSCAAMSCLNTGRQL 272



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 105/190 (55%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D D+     ++D YGK      A  +F+ M ++++VSW+AI+AA  +   + + +  F +
Sbjct: 383 DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNE 442

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M   GMKP++    SVL ACA L ++  GL VH    +  L  +  +A+ VVDMY KCG 
Sbjct: 443 MLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 502

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  + + I  +   +WNA++SG ++N +++++ + F  M+  G +P   TF  VL T
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 274 CTHAKMVRDG 283
           C +   +  G
Sbjct: 563 CANLATIELG 572



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 37/349 (10%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +++M  +G   +  ++    ++C  +  L N G  +HAH +K  F               
Sbjct: 238 FIEMQRLGLGVSQPSYASAFRSCAAMSCL-NTGRQLHAHAIKNKF--------------- 281

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                         S DR  V  T +VD Y K     +AR  F  +P     + +A+M  
Sbjct: 282 --------------SSDR--VVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             R     E + LF+ M    ++ +   L  V +ACA      QG  VH  A +   + +
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +  AV+D+Y KC  +  A  +F+G+  KD+ +WNA+I+ +  NG    ++  F+ M++
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + T+ +VL  C   + +  GL + + +    G+       + VVD+  + G+++
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMYCKCGIID 504

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           EA+K  +     +GG     W A+LS   +  + E   + + ++ +MG+
Sbjct: 505 EAQKLHDR----IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGL 549



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 151/344 (43%), Gaps = 37/344 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q    + SV  +++M   G  P+  TF  L+K+C  L  L + G+ VHA  VK 
Sbjct: 120 LVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEEL-SLGVQVHALAVKT 178

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                + DV T + +VD YGK    ++A   F
Sbjct: 179 GL-------------------------------EIDVRTGSALVDMYGKCRSLDDALCFF 207

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPERN VSW A +A   +   +   L LF +MQ +G+  ++    S   +CA +  + 
Sbjct: 208 YGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLN 267

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H++A +     + ++ TA+VD+Y+K   +  A   F G+ N      NAM+ G+ 
Sbjct: 268 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 327

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G   +++ LF  M++S  +    +   V + C   K    G  +   ++   G +  +
Sbjct: 328 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQV-HCLAIKSGFDVDI 386

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
                V+DL  +   + EA    +    G+   D+  W A+++A
Sbjct: 387 CVNNAVLDLYGKCKALMEAYLIFQ----GMKQKDSVSWNAIIAA 426


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/447 (35%), Positives = 240/447 (53%), Gaps = 29/447 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY +    + ++  +++M+ + G  PN  T   ++ ACV      N    +H + VK
Sbjct: 370 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSN-KESIHGYAVK 428

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF ED +V ++L++ YS + KM  +  +FD    RD V+W TM+ GY   G + NA  L
Sbjct: 429 LGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVL 488

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGA 178
             +M                R+ + K+V       ++ G  KPN   L++VL  CA L A
Sbjct: 489 LHEM---------------QRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAA 533

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           I +G  +H+YA R  L  ++ + +A+VDMY+KCG ++ +  VF  + NK+   WN +I  
Sbjct: 534 IAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMA 593

Query: 239 VAMNGDAKKSLELFDRMVKSG-----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
             M+G  +++LELF  MV         +P E TF+ V   C+H+ ++ +GLNLF  M   
Sbjct: 594 CGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHD 653

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +GVEP  +HYACVVDLL RAG +EEA + +              W +LL ACRI+  +E+
Sbjct: 654 HGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEF--DKVGAWSSLLGACRIHQNVEL 711

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G    + L  +     S +VL  NIY  AG   +A +VRK + + G+KK+PGCS IE   
Sbjct: 712 GEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRD 771

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            V +F+AGD  H Q+ +    +H FL+
Sbjct: 772 EVHKFMAGDVSHPQSEQ----LHGFLE 794



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 129/239 (53%), Gaps = 15/239 (6%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D+   T   ++  Y K+G  ++++ LFE   +R+ VSW+ +++++S+   F E L+ FR 
Sbjct: 228 DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRL 287

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH-LEKNVILATAVVDMYSKCG 212
           M   G++ +   + SVL AC+HL  +  G  +H+Y  R + L +N  + +A+VDMY  C 
Sbjct: 288 MVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCR 347

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVL 271
            V S   VF+ I  +    WNAMISG A NG  +K+L LF  M+K +G  P  TT  +V+
Sbjct: 348 QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 407

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQL----EHYA--CVVDLLARAGMVEEAEKFIE 324
             C H +        F N  +++G   +L    + Y    ++D+ +R G ++ +E   +
Sbjct: 408 PACVHCEA-------FSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFD 459



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 35/278 (12%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           +R   ++N  + ++  Y++M   G  P+N+ FP ++KA   L  L+  G  +HA  VKFG
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKT-GEQIHAAAVKFG 122

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           +G     V++                              T+V+ YGK G   +  ++F+
Sbjct: 123 YGSSSVTVAN------------------------------TLVNMYGKCGGIGDVCKVFD 152

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG---A 178
           ++ +R+ VSW++ +AA  R   +++ L  FR MQ   M+ +   LVSV  AC++LG    
Sbjct: 153 RITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHG 212

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +H Y+ R   +K      A++ MY+K G V  + ++FE   ++D  +WN MIS 
Sbjct: 213 LRLGKQLHGYSLRVGDQK-TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISS 271

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
            + +    ++L  F  MV  G +    T  +VL  C+H
Sbjct: 272 FSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 167/390 (42%), Gaps = 67/390 (17%)

Query: 1   MIRGYMQAN-FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI  + Q++ F +   F  L +L+ G E +  T   ++ AC  L  L+  G  +HA+V++
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLE-GVELDGVTIASVLPACSHLERLD-VGKEIHAYVLR 325

Query: 60  FG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
                E+ FV S+L                               VD Y      E+ R 
Sbjct: 326 NNDLIENSFVGSAL-------------------------------VDMYCNCRQVESGRR 354

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLG 177
           +F+ +  R    W+A+++ Y+R    ++ L LF +M +V G+ PN + + SV+ AC H  
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A +    +H YA +   +++  +  A++DMYS+ G +  + ++F+ +  +D  +WN MI+
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 238 GVAMNGDAKKSLELFDRMVKSGT-----------------QPTETTFVAVLTTCTHAKMV 280
           G  ++G    +L L   M +                    +P   T + VL  C     +
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
             G  +       Y +   L     V    VD+ A+ G +  + +   E    +   +  
Sbjct: 535 AKGKEIH-----AYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNE----MPNKNVI 585

Query: 337 VWGALLSACRIYGKIEVGNRVWRKL-AEMG 365
            W  L+ AC ++GK E    +++ + AE G
Sbjct: 586 TWNVLIMACGMHGKGEEALELFKNMVAEAG 615



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 10/212 (4%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           P R+  SW   + + +R +DF+E +S + +M   G +P+     +VL A + L  +  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 184 WVHSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            +H+ A ++ +   +V +A  +V+MY KCG +     VF+ I+++D  +WN+ I+ +   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM---SAVYGVEPQ 299
              +++LE F  M     + +  T V+V   C++   V  GL L + +   S   G +  
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLG-VMHGLRLGKQLHGYSLRVGDQKT 231

Query: 300 LEHYACVVDLLARAGMVEEA----EKFIEEKM 327
             + A ++ + A+ G V+++    E F++  M
Sbjct: 232 FTNNA-LMAMYAKLGRVDDSKALFESFVDRDM 262


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/426 (33%), Positives = 231/426 (54%), Gaps = 35/426 (8%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++  + +ML  G +P+++T+  ++KAC  L  LE +G+ VH  V+K G G D FV S   
Sbjct: 478 TILHFNEMLRFGMKPDDFTYGSVLKACAALRSLE-YGLMVHDKVIKSGLGSDAFVAS--- 533

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
                                       T+VD Y K G  + A++L +++  +  VSW+A
Sbjct: 534 ----------------------------TVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNA 565

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           I++ +S   + +E    F +M ++G+KP+     +VL  CA+L  I  G  +H    +  
Sbjct: 566 ILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQE 625

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +  +  +++ +VDMY+KCG +  +L VFE +  +D  +WNAMI G A++G   ++L +F+
Sbjct: 626 MLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFE 685

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           RM K    P   TFVAVL  C+H  +  DG   F  M+  Y +EPQLEH+AC+VD+L R+
Sbjct: 686 RMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRS 745

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
              +EA KFI          DA +W  LLS C+I   +E+       +  +   D S ++
Sbjct: 746 KGPQEAVKFINSMP---FQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSSVYI 802

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           L  N+Y E+G   + ++ R+L+ +  +KK+PGCS IEV   +  FL GD  H ++GE+Y 
Sbjct: 803 LLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMHGFLVGDKAHPRSGELYE 862

Query: 434 VIHSFL 439
           +++  +
Sbjct: 863 MLNDLI 868



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 1/260 (0%)

Query: 28  PNNYTFPPLIKACVILG-PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           P   TF  + ++C   G      G   HA +V  GF    FV + LL+ Y+       AR
Sbjct: 55  PARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACAR 114

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD  P RD V+W TM+  Y   GD   A  LF+ MP+ + VSW+A+++ Y +   F+E
Sbjct: 115 RVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQE 174

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
            + LF +M   G+ P+ +    +L +C+ L  ++ G+ VH+ A +  LE +V   +A+VD
Sbjct: 175 SVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVD 234

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY KC  +  AL  F G+  ++  +W A I+G   N    + LELF  M + G   ++ +
Sbjct: 235 MYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPS 294

Query: 267 FVAVLTTCTHAKMVRDGLNL 286
           + +   +C     +  G  L
Sbjct: 295 YASAFRSCAAMSCLNTGRQL 314



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 105/190 (55%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D D+     ++D YGK      A  +F+ M ++++VSW+AI+AA  +   + + +  F +
Sbjct: 425 DVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNE 484

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M   GMKP++    SVL ACA L ++  GL VH    +  L  +  +A+ VVDMY KCG 
Sbjct: 485 MLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 544

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  + + I  +   +WNA++SG ++N +++++ + F  M+  G +P   TF  VL T
Sbjct: 545 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 604

Query: 274 CTHAKMVRDG 283
           C +   +  G
Sbjct: 605 CANLATIELG 614



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 37/349 (10%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +++M  +G   +  ++    ++C  +  L N G  +HAH +K  F  D  V         
Sbjct: 280 FIEMQRLGLGVSQPSYASAFRSCAAMSCL-NTGRQLHAHAIKNKFSSDRVV--------- 329

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                GTA                 +VD Y K     +AR  F  +P     + +A+M  
Sbjct: 330 -----GTA-----------------IVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 367

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             R     E + LF+ M    ++ +   L  V +ACA      QG  VH  A +   + +
Sbjct: 368 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 427

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +  AV+D+Y KC  +  A  +F+G+  KD+ +WNA+I+ +  NG    ++  F+ M++
Sbjct: 428 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 487

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + T+ +VL  C   + +  GL + + +    G+       + VVD+  + G+++
Sbjct: 488 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIK-SGLGSDAFVASTVVDMYCKCGIID 546

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           EA+K  +     +GG     W A+LS   +  + E   + + ++ +MG+
Sbjct: 547 EAQKLHDR----IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGL 591



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 151/344 (43%), Gaps = 37/344 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q    + SV  +++M   G  P+  TF  L+K+C  L  L + G+ VHA  VK 
Sbjct: 162 LVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEEL-SLGVQVHALAVKT 220

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                + DV T + +VD YGK    ++A   F
Sbjct: 221 GL-------------------------------EIDVRTGSALVDMYGKCRSLDDALCFF 249

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPERN VSW A +A   +   +   L LF +MQ +G+  ++    S   +CA +  + 
Sbjct: 250 YGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLN 309

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H++A +     + ++ TA+VD+Y+K   +  A   F G+ N      NAM+ G+ 
Sbjct: 310 TGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLV 369

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G   +++ LF  M++S  +    +   V + C   K    G  +   ++   G +  +
Sbjct: 370 RAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQV-HCLAIKSGFDVDI 428

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
                V+DL  +   + EA    +    G+   D+  W A+++A
Sbjct: 429 CVNNAVLDLYGKCKALMEAYLIFQ----GMKQKDSVSWNAIIAA 468


>gi|218193370|gb|EEC75797.1| hypothetical protein OsI_12731 [Oryza sativa Indica Group]
          Length = 523

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 153/422 (36%), Positives = 225/422 (53%), Gaps = 7/422 (1%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IR       P  +V  ++DML     P   TFP L  A   LG   + G  +H  VVK G
Sbjct: 106 IRALADGPGPGAAVALFVDMLGSPTPPERRTFPSLFAAYARLGRAGD-GAGLHGMVVKLG 164

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
            G D +V +S++  Y+       A AL  +    D V   + +    + G  + AR +F+
Sbjct: 165 LGGDAYVRNSVIAMYASRGAADEAIALLARCEAFDAVACNSAIVALARAGRVDEARAVFD 224

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            MP R   +WSA+++AYSR S   + + LF  MQ  G++PN + LVSVL  CA LGA+ Q
Sbjct: 225 GMPARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQ 284

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMISG 238
           G WVH+Y  ++ +  N ++ TA+VDMY KCG +  A  VF+   ++      +WN+M+ G
Sbjct: 285 GAWVHAYIDKHDVAMNALVVTALVDMYCKCGDIRKAREVFDASRSRGQAKLSSWNSMMLG 344

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A++G  +++  LF  +   G +P   TF+A+L    H+ M  +   +  +M++ +GV P
Sbjct: 345 HAVHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGVVP 404

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +EHY C+VD LARAG + EAE  I          DA VWGALLS CR++G  E   R  
Sbjct: 405 GVEHYGCLVDALARAGRLREAEGVIAAMP---VAPDAAVWGALLSGCRLHGDAEAAARAA 461

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           R+       D   +VL+ +     G       VR  + E G+ K PGCS+IEV+GVV EF
Sbjct: 462 REAVRCDPRDSGAYVLAASALARGGEARRGAAVRGRMREEGVGKVPGCSMIEVDGVVHEF 521

Query: 419 LA 420
           ++
Sbjct: 522 VS 523



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 153/381 (40%), Gaps = 22/381 (5%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK-MGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           +HA +VK G   DP   S  + F +   +    A  L    P  +   W T +       
Sbjct: 54  LHAALVKSGLARDPIAASRAVAFCAGDGRDAAYAARLVRHHPRPNAFMWNTAIRALADGP 113

Query: 112 DFENARELFEKM------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
               A  LF  M      PER   ++ ++ AAY+R+    +   L   + ++G+  +   
Sbjct: 114 GPGAAVALFVDMLGSPTPPERR--TFPSLFAAYARLGRAGDGAGLHGMVVKLGLGGDAYV 171

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
             SV+   A  GA  + + + +  + +    + +   + +   ++ G V  A +VF+G+ 
Sbjct: 172 RNSVIAMYASRGAADEAIALLARCEAF----DAVACNSAIVALARAGRVDEARAVFDGMP 227

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285
            +    W+AM+S  + +     ++ELF  M   G +P     V+VL  C     +  G  
Sbjct: 228 ARTVATWSAMVSAYSRDSRCHDAVELFSAMQAEGVEPNANVLVSVLGCCASLGALEQGAW 287

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
           +   +   + V         +VD+  + G + +A +  +      G    + W +++   
Sbjct: 288 VHAYIDK-HDVAMNALVVTALVDMYCKCGDIRKAREVFDASR-SRGQAKLSSWNSMMLGH 345

Query: 346 RIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV-RKLISETGMKKK 403
            ++G+      ++ +L   G+  D  T +     Y  +G   EA  V   + SE G+   
Sbjct: 346 AVHGQWREAAALFSELRPHGLRPDNVTFIAILMAYGHSGMADEAKAVLASMASEHGV--V 403

Query: 404 PGCSVIEVNGVVEEFLAGDNR 424
           PG   +E  G + + LA   R
Sbjct: 404 PG---VEHYGCLVDALARAGR 421


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 250/433 (57%), Gaps = 5/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q    + ++  +  M   G +P+ ++   ++ +CV L   +  G  +H  +V+ 
Sbjct: 551 MIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQK-GRELHNFIVRN 609

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
              E+  +   L++ Y+    M  A  ++D++  +DV+    MV  +   G   +A+ LF
Sbjct: 610 TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLF 669

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M +RN   W++I+A Y+     KE  + F +M E  ++ +   +V+++  C+ L A+ 
Sbjct: 670 DQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALE 729

Query: 181 QGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            G  +HS   K+  +  +V+L TA+VDMYSKCG +  A +VF+ ++ K+  +WNAMISG 
Sbjct: 730 HGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGY 789

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           + +G +K++L L++ M K G  P E TF+A+L+ C+H  +V +GL +F +M   Y +E +
Sbjct: 790 SKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAK 849

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EHY C+VDLL RAG +E+A++F+ EKM      + + WGALL ACR++  +++G    +
Sbjct: 850 AEHYTCMVDLLGRAGRLEDAKEFV-EKMP--IEPEVSTWGALLGACRVHKDMDMGRLAAQ 906

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L E+   +   +V+  NIY  AG   E   +R+++   G+KK PG S IE+N  ++ F 
Sbjct: 907 RLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFH 966

Query: 420 AGDNRHAQAGEIY 432
           AG   H +  EIY
Sbjct: 967 AGSKTHPKTEEIY 979



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 172/352 (48%), Gaps = 48/352 (13%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML +G  P+N+TF   ++ C  L   +  G  VH+ ++  GF  D FV ++L        
Sbjct: 267 MLKIGVCPDNFTFASALRVCGALRSRDG-GKQVHSKLIACGFKGDTFVGNAL-------- 317

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                  +D Y K  D E+  ++F++M ERN V+W++I++A ++
Sbjct: 318 -----------------------IDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
              F + L LF +MQE G K N   L S+L A A L  I +G  +H +  R  L  ++IL
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIIL 414

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF-DRMVKSG 259
            +A+VDMYSKCG V  A  VF  +  ++  ++NA+++G    G A+++LEL+ D   + G
Sbjct: 415 GSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDG 474

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLF-----ENMSAVYGVEPQLEHYACVVDLLARAG 314
            QP + TF  +LT C + +    G  +       N++    VE +L H      + +  G
Sbjct: 475 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH------MYSECG 528

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            +  A++        +   +A  W +++   +  G+ +   R+++++   GI
Sbjct: 529 RLNYAKEIFNR----MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGI 576



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 164/314 (52%), Gaps = 7/314 (2%)

Query: 19  LDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
           L + D   E N  T+  +I A    G   N  + +   + + G+  + F + S+L   + 
Sbjct: 331 LKVFDEMGERNQVTWNSIISAEAQFGHF-NDALVLFLRMQESGYKSNRFNLGSILMASAG 389

Query: 79  VHKMGTARAL----FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
           +  +G  R L         + D++  + +VD Y K G  E A ++F  + ERN VS++A+
Sbjct: 390 LADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNAL 449

Query: 135 MAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           +A Y +    +E L L+  MQ E G++P++    ++LT CA+     QG  +H++  R +
Sbjct: 450 LAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN 509

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           + KN+I+ T +V MYS+CG ++ A  +F  ++ ++A +WN+MI G   NG+ +++L LF 
Sbjct: 510 ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK 569

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           +M  +G +P   +  ++L++C      + G  L  N      +E +      +VD+ A+ 
Sbjct: 570 QMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL-HNFIVRNTMEEEGILQVVLVDMYAKC 628

Query: 314 GMVEEAEKFIEEKM 327
           G ++ A K  ++ +
Sbjct: 629 GSMDYAWKVYDQTI 642



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 166/381 (43%), Gaps = 68/381 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY+Q    + ++  Y DM  + G +P+ +TF  L+  C      +N G  +HAH+++
Sbjct: 449 LLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRN-DNQGRQIHAHLIR 507

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                                              ++++  T +V  Y + G    A+E+
Sbjct: 508 ANI-------------------------------TKNIIVETELVHMYSECGRLNYAKEI 536

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M ERNA SW++++  Y +  + +E L LF+QMQ  G+KP+   L S+L++C  L   
Sbjct: 537 FNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDS 596

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKC---------------------------- 211
            +G  +H++  R  +E+  IL   +VDMY+KC                            
Sbjct: 597 QKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAF 656

Query: 212 ---GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
              G  + A ++F+ +  ++   WN++++G A  G  K+S   F  M++S  +    T V
Sbjct: 657 VNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMV 716

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            ++  C+    +  G  L   +     V   +     +VD+ ++ G + +A    +    
Sbjct: 717 TIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFD---- 772

Query: 329 GLGGGDANVWGALLSACRIYG 349
            + G +   W A++S    +G
Sbjct: 773 NMNGKNIVSWNAMISGYSKHG 793



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 152/340 (44%), Gaps = 40/340 (11%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           N   +  LI+ C+     +  G  +H  ++  G+  D ++++ +L  Y        AR+ 
Sbjct: 70  NPLPYSSLIQDCIDSNSFQR-GKSIHTQMISNGYNPDAYLMTKILMLY--------ARS- 119

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
                              G + D   AR+LFE+MPERN  +W+ ++ AY+R+ D+ EVL
Sbjct: 120 -------------------GCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVL 160

Query: 149 SLFRQMQEVGMKPNESGLVSVLTAC---AHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
            L+ +M+  G   ++    SV+ AC     +G + Q   + S   +  L  N+ +  A+V
Sbjct: 161 RLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQ---LQSSVVKAGLNCNLFVGGALV 217

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           D Y++ G +  A++  + I       WNA+I+G       +++  +FDRM+K G  P   
Sbjct: 218 DGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNF 277

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           TF + L  C  A   RDG     +     G +        ++D+ A+    E   K  +E
Sbjct: 278 TFASALRVCG-ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 336

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
               +G  +   W +++SA   +G       ++ ++ E G
Sbjct: 337 ----MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESG 372



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 136/306 (44%), Gaps = 59/306 (19%)

Query: 29  NNYTFPPLIKACVILGPLENFGMF--VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           + +TFP +IKAC+    +E+ G    + + VVK G   + FV  +L              
Sbjct: 174 DKFTFPSVIKACI---AMEDMGGVRQLQSSVVKAGLNCNLFVGGAL-------------- 216

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
                            VDGY + G  ++A    +++   + V+W+A++A Y +I  ++E
Sbjct: 217 -----------------VDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEE 259

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
              +F +M ++G+ P+     S L  C  L +   G  VHS       + +  +  A++D
Sbjct: 260 AWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALID 319

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY+KC    S L VF+ +  ++   WN++IS  A  G    +L LF RM +SG +     
Sbjct: 320 MYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFN 379

Query: 267 FVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
             ++L               H  +VR+ L    N   + G        + +VD+ ++ GM
Sbjct: 380 LGSILMASAGLADIGKGRELHGHLVRNLL----NSDIILG--------SALVDMYSKCGM 427

Query: 316 VEEAEK 321
           VEEA +
Sbjct: 428 VEEAHQ 433


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/436 (34%), Positives = 238/436 (54%), Gaps = 30/436 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q      ++  ++ M+D G EP+  T   ++ AC  L  L+  G+ +HA VVK 
Sbjct: 219 LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKE-GLQIHARVVKT 277

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             F +D  + ++L++ Y+   K+  AR +FD+   R+VV+ T+MV GY +    + AR +
Sbjct: 278 NKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFM 337

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F KM +RN VSW+A++A Y++  + +E L LFR ++                        
Sbjct: 338 FSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKR----------------------- 374

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            + +W   Y     L+ ++ +  +++DMY KCG +     VFE +  +D  +WNA+I G 
Sbjct: 375 -ESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGY 433

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A NG   ++L++F +M+  G +P   T + VL  C+HA +V +G + F +M   +G+ P 
Sbjct: 434 AQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPL 492

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HY C+VDLL RAG + EA+  IE         DA VWG+LL+AC+++G IE+G     
Sbjct: 493 KDHYTCMVDLLGRAGCLNEAKNLIE---AMPVNPDAVVWGSLLAACKVHGNIEMGKHAAE 549

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL E+   +   +VL  N+Y E G   +  +VRKL+ + G+ K+PGCS IEV   V  FL
Sbjct: 550 KLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFL 609

Query: 420 AGDNRHAQAGEIYRVI 435
             D  H    +IY V+
Sbjct: 610 VKDKSHPHRKQIYSVL 625



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 152/300 (50%), Gaps = 1/300 (0%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
           + PN+  F  L+ +C+         + VHA ++   F  + F+ + L++ Y     +  A
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRL-VHARILMTQFSMEIFIQNRLIDVYGKCDCLDDA 69

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           R LFD+ P R+  TW +++    K G  + A  LF  MPE +  SW+++++ +++   F+
Sbjct: 70  RKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFE 129

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E L  F +M       NE    S L+ACA L  +  G  VH+   +     +V + +A++
Sbjct: 130 ESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALI 189

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMYSKCG V  A  VF G+  ++   WN++I+    NG A ++LE+F RM+ SG +P E 
Sbjct: 190 DMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEV 249

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T  +V++ C     +++GL +   +         L     +VD+ A+   V EA +  + 
Sbjct: 250 TLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDR 309


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/323 (38%), Positives = 210/323 (65%), Gaps = 8/323 (2%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR +FD+ P R++V+W  M+ GY    D + ARELF+ MPE++ VSW+ +++ Y++   +
Sbjct: 245 ARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRY 304

Query: 145 KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILA 201
           ++ L LFR MQ E  ++PNE  +VSVL+ACA+L A+ +G WVH++  ++   L     L 
Sbjct: 305 QDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLG 364

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            A++DMY+KCG    A+ +F  +  K+  AWNA+I+ +AMNG+A+ S++ F++M ++G +
Sbjct: 365 AALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEK 424

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P + TFV VLT C+H  +V +G   F++M++  GV+P+++HY C+VD+L RAG++EEAE+
Sbjct: 425 PNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEE 484

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST--HVLSYNIY 379
            I          D  V+GALL ACR++ + +V  RV  ++  + +    +  HVL  +IY
Sbjct: 485 LIRSMP---MAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 541

Query: 380 KEAGWDMEANKVRKLISETGMKK 402
             AG   +  + R+++  +G++K
Sbjct: 542 AAAGKWFDVLEARQVVQRSGIRK 564



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 170/360 (47%), Gaps = 23/360 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR    +  P+LS   +  +L  G  P+ +T PPL+ +   L      G  VHA  V+ 
Sbjct: 65  LIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRR 124

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENAREL 119
           GF  D FVV++LL  Y  +    + R +F       DVV+W T++ GY K G+ E+A+ +
Sbjct: 125 GFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRV 184

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP RN VSWS ++  Y+   +      +F +M  +G   N     S++T  A  G +
Sbjct: 185 FDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGR--NVVTWNSMVTGFARHGLL 242

Query: 180 TQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
                    A++   E   +N++   A++  YS    +  A  +F+ +  KD  +W  MI
Sbjct: 243 -------PLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMI 295

Query: 237 SGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDGL---NLFENMSA 292
           SG A  G  + +LELF  M  +S  QP E T V+VL+ C +   + +G       +    
Sbjct: 296 SGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKM 355

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           V   E  L   A ++D+ A+ G  + A K        L   + + W AL++   + G  +
Sbjct: 356 VLNNEYNLG--AALIDMYAKCGRTDIAVKIFNS----LDRKNVSAWNALITRLAMNGNAQ 409



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 36/221 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY QA   + ++  +  M  +   +PN  T   ++ AC  L  LE  G +VHA + K
Sbjct: 294 MISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEE-GRWVHAFIDK 352

Query: 60  FG--FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
                  +  + ++L++ Y+   +   A  +F+    ++V  W  ++      G+ +++ 
Sbjct: 353 HKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSV 412

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + FE                               QM+  G KPN+   V VLTAC+H G
Sbjct: 413 DAFE-------------------------------QMKRTGEKPNDITFVGVLTACSHGG 441

Query: 178 AITQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
            + +G     S A    ++  V     +VDM  + G +  A
Sbjct: 442 LVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEA 482


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 245/442 (55%), Gaps = 11/442 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q      ++  +++M+  GF P+  T   ++ AC  L   +  G  VHAH+VK 
Sbjct: 223 LITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAA-DREGRQVHAHMVKC 281

Query: 61  GFGEDPFVVS-SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
               D  V++ +L++ Y+   +   AR +FD  P R +V+ T+++ GY K  + E+A+ +
Sbjct: 282 DRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVV 341

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M E+N ++W+ ++AAY++  + +E + LF Q++   + P      +VL AC ++  +
Sbjct: 342 FSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADL 401

Query: 180 TQGLWVHSYAKR------YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
             G   H +  +      +  E +V +  ++VDMY K G +     VFE ++ +D  +WN
Sbjct: 402 QLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWN 461

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI G A NG AK +L LF+RM+ S   P   T + VL+ C H+ +V +G   F +M+  
Sbjct: 462 AMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTED 521

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+ P  +HY C+VDLL RAG ++EAE+ I +        D+ +W +LL ACR++  +E+
Sbjct: 522 HGITPSRDHYTCMVDLLGRAGHLKEAEELINDMP---MEPDSVLWASLLGACRLHKNVEL 578

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G     +L E+   +   +VL  N+Y E G   E  +VR+ + + G+ K+PGCS IE+  
Sbjct: 579 GEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGR 638

Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
            +  FLA D RH    EI+  +
Sbjct: 639 KMNVFLARDKRHPCRNEIHNTL 660



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 132/269 (49%), Gaps = 2/269 (0%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA ++K     + F++++L+  Y+ + ++  AR +FD+ P R+  ++  ++  Y ++G  
Sbjct: 40  HARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRP 99

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSR--ISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           + AR LFE +P+ +  S++A++AA +R       + L     M       N     S L+
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALS 159

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA       G  VH    R     +V + +A+VDMY+KC     A  VF+ +  ++  +
Sbjct: 160 ACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVS 219

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN++I+    NG   ++L LF  M+ +G  P E T  +V++ C      R+G  +  +M 
Sbjct: 220 WNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMV 279

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAE 320
               +   +     +VD+ A+ G   EA 
Sbjct: 280 KCDRLRDDMVLNNALVDMYAKCGRTWEAR 308



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 136/293 (46%), Gaps = 42/293 (14%)

Query: 88  LFDKSPDRDVV-TWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
           L  +SP  D V   + +VD Y K    E+AR +F+ MPERN VSW++++  Y +     E
Sbjct: 176 LVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGE 235

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY-AKRYHLEKNVILATAVV 205
            L LF +M   G  P+E  L SV++ACA L A  +G  VH++  K   L  +++L  A+V
Sbjct: 236 ALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALV 295

Query: 206 DMYSKCG-------------------------------HVHSALSVFEGISNKDAGAWNA 234
           DMY+KCG                               +V  A  VF  +  K+  AWN 
Sbjct: 296 DMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNV 355

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN-----LFEN 289
           +I+  A NG+ ++++ LF ++ +    PT  T+  VL  C +   ++ G       L E 
Sbjct: 356 LIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEG 415

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
               +G E  +     +VD+  + G +++  K  E     +   D   W A++
Sbjct: 416 FRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER----MAARDNVSWNAMI 464


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 137/376 (36%), Positives = 220/376 (58%), Gaps = 5/376 (1%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D    ++++  YS   +M  A  LF +   +D+V+W TMV  Y ++G  + A ++FE+M
Sbjct: 355 RDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEM 414

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
            E+N VSW+++++  ++   + + L  F  M   G KP++S     L++CAHL A+  G 
Sbjct: 415 KEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGK 474

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            +H    +     ++ ++ A++ MY+KCG + SA  +F+ I + D  +WN++I+  A+NG
Sbjct: 475 QLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNG 534

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
           + +++L+LF +M   G  P E TFV +L+ C+H  ++  GL LF+ M   Y +EP  EHY
Sbjct: 535 NGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHY 594

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
           AC+VDLL RAG +EEA + +    G     +A +WGALL ACRI+G +E+      KL E
Sbjct: 595 ACMVDLLGRAGRLEEAFQLVR---GMKINANAGIWGALLGACRIHGNLELAKFAAEKLLE 651

Query: 364 MGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
                 S +VL  N+  EAG WD E  +VR+L+ E G +K+PG S IE+   V  FL+ D
Sbjct: 652 FEPHKTSNYVLLSNMQAEAGRWD-EVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSED 710

Query: 423 NRHAQAGEIYRVIHSF 438
             H +A E+  ++ S 
Sbjct: 711 PAHPRAVELCHILRSL 726



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/313 (20%), Positives = 142/313 (45%), Gaps = 33/313 (10%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           +P   ++++  Y+   +   AR LFD  P +D+V+W +M+ GY + G+     + FE+M 
Sbjct: 139 NPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMA 198

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           ER+ VSW+ ++  +  + D       F ++      PN    V++L   A  G I +   
Sbjct: 199 ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIP----NPNTVSWVTMLCGFARFGKIAE--- 251

Query: 185 VHSYAKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
               A+R   +   +NV+   A++  Y +  HV  A+S+F  +  K++ +W  +I+G   
Sbjct: 252 ----ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVR 307

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
            G   ++ +L ++M             A+++     K + D   +F  +S        + 
Sbjct: 308 MGKLDEARQLLNQMPYRNVAAQ----TAMISGYVQNKRMDDARQIFNQIS--------IR 355

Query: 302 HYACVVDLLA---RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
              C   ++A   + G ++EA    ++    +   D   W  ++++    G+++   +++
Sbjct: 356 DVVCWNTMIAGYSQCGRMDEALHLFKQ----MVKKDIVSWNTMVASYAQVGQMDAAIKIF 411

Query: 359 RKLAEMGITDFST 371
            ++ E  I  +++
Sbjct: 412 EEMKEKNIVSWNS 424



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 18/257 (7%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-NA 128
           +S++  Y    ++  AR LFDK P RD+ +WT M+  Y + G+   AR LF  +P + N 
Sbjct: 81  NSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFNLLPYKWNP 140

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           V  +A++A Y++   F E   LF  M    +        S+LT     G +  GL     
Sbjct: 141 VCCNAMVAGYAKNRQFDEARRLFDAMPAKDL----VSWNSMLTGYTRNGEMRLGLQFFEE 196

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
                 E++V+    +VD + + G ++S+   FE I N +  +W  M+ G A  G   ++
Sbjct: 197 MA----ERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEA 252

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
             LFD+M             A +  C     V + ++LF  M     +      +  V++
Sbjct: 253 RRLFDQMPIRNVVAWNAMIAAYVQNCH----VDEAISLFMEMPEKNSIS-----WTTVIN 303

Query: 309 LLARAGMVEEAEKFIEE 325
              R G ++EA + + +
Sbjct: 304 GYVRMGKLDEARQLLNQ 320



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 33/232 (14%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +S++  ++   ++  AR LFD  P R++V+W +M+  Y      E AR+LF+KMP R+  
Sbjct: 50  NSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLY 109

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+ ++  Y+R  +  +  +LF       + P +   V     C  +        V  YA
Sbjct: 110 SWTLMITCYTRNGELAKARNLF------NLLPYKWNPV----CCNAM--------VAGYA 151

Query: 190 KRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           K    +           K+++   +++  Y++ G +   L  FE ++ +D  +WN M+ G
Sbjct: 152 KNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDG 211

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
               GD   S E F+++      P   ++V +L        + +   LF+ M
Sbjct: 212 FVEVGDLNSSWEFFEKI----PNPNTVSWVTMLCGFARFGKIAEARRLFDQM 259



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 7/177 (3%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  A  +F     ++ VT  +M+  + K G   +AR+LF+ MP+RN VSW++++AAY  
Sbjct: 30  QIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLH 89

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               +E   LF +M    +  + + +++  T    L        +  Y      + N + 
Sbjct: 90  NDRVEEARQLFDKMPTRDLY-SWTLMITCYTRNGELAKARNLFNLLPY------KWNPVC 142

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             A+V  Y+K      A  +F+ +  KD  +WN+M++G   NG+ +  L+ F+ M +
Sbjct: 143 CNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE 199



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
           SY  R++L+         +    K G +  A+ VF+ +++K+    N+MIS  A NG   
Sbjct: 13  SYVFRHNLK---------ITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRIS 63

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            + +LFD M +       +   A L    H   V +   LF+ M
Sbjct: 64  DARQLFDGMPQRNIVSWNSMIAAYL----HNDRVEEARQLFDKM 103


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 239/434 (55%), Gaps = 28/434 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q  + + ++  +++M +  G   N+ T   ++ ACV  G        +H  VVK
Sbjct: 371 MITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK-KEAIHGFVVK 429

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D FV ++L++ YS + K+  A+ +F K  DRD+VTW T++ GY      E+A  +
Sbjct: 430 RGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLM 489

Query: 120 FEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
             KM   ER A                        +   V +KPN   L+++L +CA L 
Sbjct: 490 LHKMQILERKAS----------------------ERASRVSLKPNSITLMTILPSCAALS 527

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ +G  +H+YA + +L  +V + +A+VDMY+KCG +  +  VF+ I  ++   WN ++ 
Sbjct: 528 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVM 587

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              M+G+++ ++++   M+  G +P E TF++V   C+H+ MV +GL +F NM   YGVE
Sbjct: 588 AYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVE 647

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P  +HYACVVDLL RAG V+EA + I   +       A  W +LL ACRI+  +E+G   
Sbjct: 648 PSSDHYACVVDLLGRAGRVKEAYQLI--NLIPRNFDKAGAWSSLLGACRIHNNLEIGEIA 705

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            + L ++     S +VL  NIY  AG   +A +VR+ +   G++K+PGCS IE    V +
Sbjct: 706 AQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHK 765

Query: 418 FLAGDNRHAQAGEI 431
           F+AGD+ H Q+ ++
Sbjct: 766 FVAGDSSHPQSEKL 779



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/289 (29%), Positives = 143/289 (49%), Gaps = 35/289 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R  +++N  + +V  Y+DM+ +G +P+N+ FP L+KA   L  ++  G  +HAHV KF
Sbjct: 64  LLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMD-LGKQIHAHVYKF 122

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G D   V++                              T+V+ Y K GDF    ++F
Sbjct: 123 GYGVDSVTVAN------------------------------TLVNLYRKCGDFGAVYKVF 152

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG--- 177
           +++ ERN VSW++++++      ++  L  FR M +  ++P+   LVSV  AC++     
Sbjct: 153 DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPE 212

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH+Y  R   E N  +   +V MY K G + S+  +      +D   WN ++S
Sbjct: 213 GLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLS 271

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            +  N    ++LE    MV  G +P   T  +VL  C+H +M+R G  L
Sbjct: 272 SLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 158/359 (44%), Gaps = 70/359 (19%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLV 79
           MLD   EP+++T   +  AC      E   M    H      GE + F+++         
Sbjct: 186 MLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIIN--------- 236

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                                 T+V  YGKMG   +++ L      R+ V+W+ ++++  
Sbjct: 237 ----------------------TLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLC 274

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNV 198
           +   F E L   R+M   G++P+   + SVL AC+HL  +  G  +H+YA K   L++N 
Sbjct: 275 QNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 334

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            + +A+VDMY  C  V S   VF+G+ ++  G WNAMI+G A N   +++L LF  M +S
Sbjct: 335 FVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEES 394

Query: 259 -GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G     TT   V+  C     VR G   F    A++G              + + G+  
Sbjct: 395 AGLLANSTTMAGVVPAC-----VRSG--AFSKKEAIHG-------------FVVKRGL-- 432

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           + ++F++               AL+      GKI++  R++ K+ +  +  ++T +  Y
Sbjct: 433 DRDRFVQ--------------NALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGY 477



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 141/323 (43%), Gaps = 54/323 (16%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFYSL 78
           +M+  G EP+ +T   ++ AC  L  L   G  +HA+ +K G   E+ FV S+L++ Y  
Sbjct: 288 EMVLEGVEPDGFTISSVLPACSHLEMLRT-GKELHAYALKNGSLDENSFVGSALVDMYCN 346

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
             ++ +   +FD   DR +  W  M+ GY +  +++                        
Sbjct: 347 CKQVLSGCRVFDGMFDRKIGLWNAMITGYAQ-NEYD------------------------ 381

Query: 139 SRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                 +E L LF +M+E  G+  N + +  V+ AC   GA ++   +H +  +  L+++
Sbjct: 382 ------EEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRD 435

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF----- 252
             +  A++DMYS+ G +  A  +F  + ++D   WN +I+G   +   + +L +      
Sbjct: 436 RFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQI 495

Query: 253 ------DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
                 +R  +   +P   T + +L +C     +  G  +       Y ++  L     V
Sbjct: 496 LERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIH-----AYAIKNNLATDVAV 550

Query: 307 ----VDLLARAGMVEEAEKFIEE 325
               VD+ A+ G ++ + K  ++
Sbjct: 551 GSALVDMYAKCGCLQMSRKVFDQ 573



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 108/217 (49%), Gaps = 8/217 (3%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W  ++ +  R +  +E +  +  M  +G+KP+     ++L A A L  +  G  +H++  
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 191 RY-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
           ++ +   +V +A  +V++Y KCG   +   VF+ IS ++  +WN++IS +      + +L
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           E F  M+    +P+  T V+V   C++  M  +GL + + + A YG+  + E  + +++ 
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPM-PEGLLMGKQVHA-YGLR-KGELNSFIINT 237

Query: 310 LARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSA 344
           L    M  +  K    K  +G   G D   W  +LS+
Sbjct: 238 L--VAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSS 272


>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
 gi|238007354|gb|ACR34712.1| unknown [Zea mays]
          Length = 464

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 236/451 (52%), Gaps = 20/451 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM--------F 52
           M R +  +     ++  + DM+  G  P+N      + AC     L   GM         
Sbjct: 12  MARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAAGMAAARRPGKM 71

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA +V  G   D FV + L+  Y    ++  +R LFD  P R  V+W  MV  Y +  +
Sbjct: 72  VHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSN 131

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSV 169
             +A ELF  MP R+ VSW+ ++A YS +  F E L L RQM       + PN   + +V
Sbjct: 132 VGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTV 191

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KD 228
           L ACA  G +  G+WVH++  R  +  +  L  +++DMY KCG +  AL VFE     +D
Sbjct: 192 LAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARD 251

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             +W  MI G+AM+G A  +L++F  M  +G  P + T V VL  C H  +V +GL  F 
Sbjct: 252 LYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFY 311

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRI 347
           ++   Y + P++EHY CV+DLL R G ++EA   I   +M      +A +WGA L+AC++
Sbjct: 312 SLEK-YAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRM----KPNAVIWGAFLNACKV 366

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGC 406
           +  +E+G     +L  +   D    V+  ++Y K   W+  A + R+ ++   +KK PGC
Sbjct: 367 HSNVELGEIAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARE-RREMNNLQIKKTPGC 425

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           S IE++G V EF+AG  +H Q GEI  V+ +
Sbjct: 426 SSIELDGEVHEFVAGGFQHPQHGEICTVLEN 456



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 43/205 (20%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL---------VSVLTAC 173
           MP+   VS +A+  A++      + L++FR M   G+ P+   L          + L A 
Sbjct: 1   MPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAA 60

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--------------------- 212
               A   G  VH+      +  +V ++T ++ +Y + G                     
Sbjct: 61  GMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWN 120

Query: 213 ----------HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-- 260
                     +V  A  +F  +  +D  +WN MI+G ++ G   ++LEL  +M+   +  
Sbjct: 121 AMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCP 180

Query: 261 -QPTETTFVAVLTTCTHAKMVRDGL 284
             P   T   VL  C  A  +  G+
Sbjct: 181 VYPNGPTMSTVLAACAGAGCLETGI 205


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 141/412 (34%), Positives = 233/412 (56%), Gaps = 6/412 (1%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
             P+++ F  L+KAC  LG +++ G  VH H +   +  D  V SSL++ Y+    + +A
Sbjct: 101 LRPDDFVFSALVKACANLGSIDH-GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSA 159

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           +A+FD    ++ ++WT MV GY K G  E A ELF  +P +N  SW+A+++ + +     
Sbjct: 160 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGL 219

Query: 146 EVLSLFRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           E  S+F +M+   +   +   L S++ ACA+L A   G  VH        +  V ++ A+
Sbjct: 220 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNAL 279

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KC  V +A  +F  + ++D  +W ++I G+A +G A+K+L L+D MV  G +P E
Sbjct: 280 IDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNE 339

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFV ++  C+H   V  G  LF++M+  YG+ P L+HY C++DLL R+G+++EAE  I 
Sbjct: 340 VTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIH 399

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL-AEMGITDFSTHVLSYNIYKEAG 383
                    D   W ALLSAC+  G+ ++G R+   L +   + D ST++L  NIY  A 
Sbjct: 400 TMP---FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASAS 456

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              + ++ R+ + E  ++K PG S +EV    E F AG+  H    +I+R++
Sbjct: 457 LWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 508



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 95/152 (62%), Gaps = 1/152 (0%)

Query: 102 TMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMK 160
           T+V+ YGK G   +A ++F++MP R+ ++W++++ A ++ +   K +          G++
Sbjct: 43  TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 102

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P++    +++ ACA+LG+I  G  VH +        + ++ +++VDMY+KCG ++SA +V
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           F+ I  K+  +W AM+SG A +G  +++LELF
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 92/194 (47%), Gaps = 8/194 (4%)

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L  CA    +T    +H++  +  + +   LA  +V++Y KCG    AL VF+ + ++D 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFE 288
            AW ++++ +     + K+L +F  +  S   +P +  F A++  C +   +  G  +  
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 289 N-MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
           + + + Y  +  ++  + +VD+ A+ G++  A+   +     +   +   W A++S    
Sbjct: 130 HFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFD----SIRVKNTISWTAMVSGYAK 183

Query: 348 YGKIEVGNRVWRKL 361
            G+ E    ++R L
Sbjct: 184 SGRKEEALELFRIL 197


>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
          Length = 536

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 235/449 (52%), Gaps = 20/449 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM--------F 52
           M R +  +     ++  + DM+  G  P+N      + AC     L   GM         
Sbjct: 84  MARAHAASGQAAQALAVFRDMIADGVLPDNVALAVALAACHTTASLPAAGMAAARRPGKM 143

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA +V  G   D FV + L+  Y    ++  +R LFD  P R  V+W  MV  Y +  +
Sbjct: 144 VHAIIVTSGIVPDVFVSTELIRVYGEYGELALSRRLFDAMPVRSTVSWNAMVHQYIRHSN 203

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSV 169
             +A ELF  MP R+ VSW+ ++A YS +  F E L L RQM       + PN   + +V
Sbjct: 204 VGDAYELFLAMPRRDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTV 263

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KD 228
           L ACA  G +  G+WVH++  R  +  +  L  +++DMY KCG +  AL VFE     +D
Sbjct: 264 LAACAGAGCLETGIWVHAFVDRNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARD 323

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             +W  MI G+AM+G A  +L++F  M  +G  P + T V VL  C H  +V +GL  F 
Sbjct: 324 LYSWTTMICGLAMHGRAADALKMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFY 383

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRI 347
           ++   Y + P++EHY CV+DLL R G ++EA   I   +M      +A +WGA L+AC++
Sbjct: 384 SLEK-YAITPKIEHYGCVIDLLGRVGRLQEAYNIIRTMRM----KPNAVIWGAFLNACKV 438

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGC 406
           +  +E+G     +L  +   D    V+  ++Y K   W+  A + R+ ++   +KK PGC
Sbjct: 439 HSNVELGEIAAAELTRLDPGDPWAKVMLSSLYAKLQDWNSLARE-RREMNNLQIKKTPGC 497

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           S IE++G V EF+AG  +H Q GEI  V+
Sbjct: 498 SSIELDGEVHEFVAGGFQHPQHGEICTVL 526



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 43/227 (18%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y  +G   +AR+LF++MP+   VS +A+  A++      + L++FR M   G+ 
Sbjct: 51  TALLSAYAALGRPRHARDLFDEMPDPGLVSRTAMARAHAASGQAAQALAVFRDMIADGVL 110

Query: 161 PNESGL---------VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
           P+   L          + L A     A   G  VH+      +  +V ++T ++ +Y + 
Sbjct: 111 PDNVALAVALAACHTTASLPAAGMAAARRPGKMVHAIIVTSGIVPDVFVSTELIRVYGEY 170

Query: 212 G-------------------------------HVHSALSVFEGISNKDAGAWNAMISGVA 240
           G                               +V  A  +F  +  +D  +WN MI+G +
Sbjct: 171 GELALSRRLFDAMPVRSTVSWNAMVHQYIRHSNVGDAYELFLAMPRRDVVSWNTMIAGYS 230

Query: 241 MNGDAKKSLELFDRMVKSGT---QPTETTFVAVLTTCTHAKMVRDGL 284
           + G   ++LEL  +M+   +    P   T   VL  C  A  +  G+
Sbjct: 231 LVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGI 277


>gi|87240913|gb|ABD32771.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 497

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 146/423 (34%), Positives = 244/423 (57%), Gaps = 30/423 (7%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLEN---FGMFVHAHVVKFGFG-EDPFVVSSLL 73
           ++ ML+   EPN+ T   L+ AC    P +    FG  +H H  K GF   D  V ++L+
Sbjct: 75  FIQMLEAEVEPNHITLITLLSACA-HSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALI 133

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           + Y+   K+  AR +FD+   R++V+W TM+DGY K GD ++A +LF+K+P +N VSW+ 
Sbjct: 134 DMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTV 193

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           ++  + +   ++E L  FR+MQ  G+ P+   ++++++ACA+LGA+  GLWVH    +  
Sbjct: 194 VIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLWVHRLVMKKE 253

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
              NV +  +++DMY++CG +  A  VF+G+S ++  +WN++I G A+NG A K+L  F 
Sbjct: 254 FRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFF- 312

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
                               C+HA ++ +GL +F ++   +   P++EHY C+VDL +RA
Sbjct: 313 -------------------PCSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRA 353

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G ++EA   I +KM  +   +  V G+LL+ACR  G +E+  +V +   E+     S +V
Sbjct: 354 GRLKEAWDVI-KKMPMM--PNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPGGDSNYV 410

Query: 374 LSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           L  NIY   G WD  A+KVR+ + E G++K    S IE++  + +F++GD  H +   IY
Sbjct: 411 LFSNIYAAVGKWD-GASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSGDKYHEENDYIY 469

Query: 433 RVI 435
             +
Sbjct: 470 SAL 472



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 85/137 (62%), Gaps = 5/137 (3%)

Query: 124 PERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH---LGAI 179
           P  N  VSW++ ++ + + ++F +  S F QM E  ++PN   L+++L+ACAH     +I
Sbjct: 47  PNSNQTVSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSI 106

Query: 180 TQGLWVHSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           T G  +H++A ++    N V++ TA++DMY+KCG +  A  VF+ +  ++  +WN MI G
Sbjct: 107 TFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDG 166

Query: 239 VAMNGDAKKSLELFDRM 255
              NGD   +L+LFD++
Sbjct: 167 YMKNGDVDDALKLFDKL 183


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 234/435 (53%), Gaps = 37/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  + Q  FP  S+  +L M+D G +P+ +T   L+ AC  L  L   G  +H  +++ 
Sbjct: 473 LIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLR-CGKEIHGFMLRN 531

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+  SL+  Y                     +  ++M+ G          + +F
Sbjct: 532 GLELDEFIGISLMSLY---------------------IQCSSMLLG----------KLIF 560

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KM  ++ V W+ ++  +S+     E L  FRQM   G+KP E  +  VL AC+ + A+ 
Sbjct: 561 DKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALR 620

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VHS+A + HL ++  +  A++DMY+KCG +  + ++F+ ++ KD   WN +I+G  
Sbjct: 621 LGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYG 680

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G   K++ELF+ M   G +P   TF+ VL  C HA +V +GL     M  +YGV+P+L
Sbjct: 681 IHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKL 740

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYACVVD+L RAG + EA K + E        D+ +W +LLS+CR YG +E+G  V +K
Sbjct: 741 EHYACVVDMLGRAGQLTEALKLVNEMP---DEPDSGIWSSLLSSCRNYGDLEIGEEVSKK 797

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+       +VL  N+Y   G WD E  KVR+ + E G+ K  GCS IE+ G+V  FL
Sbjct: 798 LLELEPNKAENYVLLSNLYAGLGKWD-EVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFL 856

Query: 420 AGDNRHAQAGEIYRV 434
             D   +++ +I + 
Sbjct: 857 VSDGSLSESKKIQQT 871



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 139/280 (49%), Gaps = 37/280 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY +    + ++  +L++L      P+N+T P + KAC  +  +E  G  VHA  +K
Sbjct: 165 LLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVE-LGEAVHALALK 223

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D FV ++L+  Y                               GK G  E+A ++
Sbjct: 224 AGGFSDAFVGNALIAMY-------------------------------GKCGFVESAVKV 252

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAHL 176
           FE M  RN VSW+++M A S    F E   +F+++   +E G+ P+ + +V+V+ ACA +
Sbjct: 253 FETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAV 312

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G +  G+ VH  A +  + + V +  ++VDMYSKCG++  A ++F+    K+  +WN +I
Sbjct: 313 GEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTII 372

Query: 237 SGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCT 275
            G +  GD +   EL   M +    +  E T + VL  C+
Sbjct: 373 WGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 120/260 (46%), Gaps = 33/260 (12%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P+  T   +I AC  +G +   GM VH    K G  E+  V +SL            
Sbjct: 294 GLVPDVATMVTVIPACAAVGEVR-MGMVVHGLAFKLGITEEVTVNNSL------------ 340

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                              VD Y K G    AR LF+    +N VSW+ I+  YS+  DF
Sbjct: 341 -------------------VDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDF 381

Query: 145 KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           + V  L ++MQ E  ++ NE  +++VL AC+    +     +H YA R+   K+ ++A A
Sbjct: 382 RGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANA 441

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
            V  Y+KC  +  A  VF G+  K   +WNA+I   A NG   KSL+LF  M+ SG  P 
Sbjct: 442 FVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPD 501

Query: 264 ETTFVAVLTTCTHAKMVRDG 283
             T  ++L  C   K +R G
Sbjct: 502 RFTIGSLLLACARLKFLRCG 521



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 13/259 (5%)

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
           +D +     V  Y K    + A  +F  M  +   SW+A++ A+++     + L LF  M
Sbjct: 434 KDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVM 493

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
            + GM P+   + S+L ACA L  +  G  +H +  R  LE +  +  +++ +Y +C  +
Sbjct: 494 MDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSM 553

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
                +F+ + NK    WN MI+G + N    ++L+ F +M+  G +P E     VL  C
Sbjct: 554 LLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGAC 613

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGL 330
           +    +R G  +       + ++  L   A V    +D+ A+ G +E+++   +     +
Sbjct: 614 SQVSALRLGKEVHS-----FALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDR----V 664

Query: 331 GGGDANVWGALLSACRIYG 349
              D  VW  +++   I+G
Sbjct: 665 NEKDEAVWNVIIAGYGIHG 683



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 124/251 (49%), Gaps = 9/251 (3%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM- 154
           DVV  T ++  Y   G   ++R +F+   E++   ++A+++ YSR + F++ +SLF ++ 
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
               + P+   L  V  ACA +  +  G  VH+ A +     +  +  A++ MY KCG V
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFV 246

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS---GTQPTETTFVAVL 271
            SA+ VFE + N++  +WN+++   + NG   +   +F R++ S   G  P   T V V+
Sbjct: 247 ESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVI 306

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
             C     VR G+ +   ++   G+  ++     +VD+ ++ G + EA    +      G
Sbjct: 307 PACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMN----G 361

Query: 332 GGDANVWGALL 342
           G +   W  ++
Sbjct: 362 GKNVVSWNTII 372



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 169 VLTACAHLGAITQGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           +L AC H   I  G  VH+     H L  +V+L+T ++ MYS CG    +  VF+    K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTC 274
           D   +NA++SG + N   + ++ LF  ++  +   P   T   V   C
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKAC 205


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/422 (33%), Positives = 239/422 (56%), Gaps = 18/422 (4%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I+GY +     L+V  ++ M      P+ +T+P LIKAC  +  ++  G+  H   V+ G
Sbjct: 143 IKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE-GVAFHGSAVRCG 201

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
            G D FV++SL++ Y    ++  AR +FD+  +R+VV+WT M+ GY    D   AR+LF+
Sbjct: 202 VGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFD 261

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-------------MKPNESGLVS 168
           +MPE+NAVSW+AI++ Y +  D +    +F +M                 +KP+E  +VS
Sbjct: 262 EMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAWSALISGNVKPDEFIMVS 321

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           +++AC+ +G++    WV  Y ++  ++     +  A++DM +KCG +  A  +FE +  +
Sbjct: 322 LMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKR 381

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           D  ++ +M+ G++++G   +++ LF RM+  G  P +  F  +LT C+ A +V +G   F
Sbjct: 382 DLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYF 441

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
           E+M   Y + P  +HYAC+VDLL RAG ++EA + ++        G    WGALL AC++
Sbjct: 442 ESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAG---AWGALLGACKL 498

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
           +  IE+G  V  +L E+   +   +VL  NIY  A   ++ + +R  + E G++K PGCS
Sbjct: 499 HCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 558

Query: 408 VI 409
            I
Sbjct: 559 WI 560



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 125/289 (43%), Gaps = 46/289 (15%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IR Y    FP      YL  L   F+  + +   L+KAC     LE     VHA +++ G
Sbjct: 52  IRRYTALTFPD-----YLPTL-RSFDTTS-SISTLLKACTTTSTLEQ----VHARIIRKG 100

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
             +D F++S  L   + +       ++F+       V W T + GY              
Sbjct: 101 LHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS------------- 147

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
              E  +VS +               +SLF +M+     P++    S++ AC+ +  + +
Sbjct: 148 ---ENYSVSLT---------------VSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE 189

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G+  H  A R  +  +V + T+++D+Y KCG +  A  VF+ +  ++  +W AMI+G A 
Sbjct: 190 GVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYAS 249

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
             D  ++ +LFD M     +    ++ A+++       +R    +F+ M
Sbjct: 250 FSDLVEARKLFDEM----PEKNAVSWNAIISGYVKCGDLRSARKMFDEM 294



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           S + ++L AC     + Q   VH+   R  L ++  + +  + + +   +     SVF G
Sbjct: 74  SSISTLLKACTTTSTLEQ---VHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNG 130

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +S+     WN  I G + N     ++ LF RM +S   P + T+ +++  C+    V++G
Sbjct: 131 VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 190

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
           +  F   +   GV   +     ++DL  + G +  A K  +E    +G  +   W A+++
Sbjct: 191 VA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDE----MGERNVVSWTAMIA 245

Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
               +  +    +++ ++ E     ++  +  Y
Sbjct: 246 GYASFSDLVEARKLFDEMPEKNAVSWNAIISGY 278


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/471 (31%), Positives = 256/471 (54%), Gaps = 36/471 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG   ++ P  ++  +++M       P++++F  L+KA      L N G+ +H   V 
Sbjct: 76  LIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTN-GLQLHCLAVG 134

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------------------------- 92
           +G     FV ++L+  Y+    +  AR +FD+                            
Sbjct: 135 YGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQV 194

Query: 93  ----PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
               P R++ +W  M+ GY K G+ + ARE+F KMP ++ VSWS ++  ++   +F +  
Sbjct: 195 FRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAF 254

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           + FR+++  GM+PNE  L  VL+ACA  GA   G  +H + ++    + + +  A++D Y
Sbjct: 255 AFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTY 314

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           SKCG++  A  VF+ +  + A +W AMI+G+AM+G  ++++ LF+ M +S  +P   TF+
Sbjct: 315 SKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFI 374

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           ++L  C+HA +V  G + F  M   YG+EP +EHY C+VDL  RAG +++A  F+ +   
Sbjct: 375 SILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQM-- 432

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
            +   D  VW  LL AC I+G + +  +V R+L+E+   +   HVL  NIY  AG   + 
Sbjct: 433 PISPNDI-VWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDV 491

Query: 389 NKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
             +R+ ++   +KK PG S+IEVN ++  F+AG+ ++  A E ++ +   +
Sbjct: 492 AALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIM 542



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 15/224 (6%)

Query: 159 MKPNESGLVSVLTACAHLGAI--TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216
           M   E   +++ + C  L  +   Q L   +    Y L    +L    V +      +H 
Sbjct: 1   MNSRELHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDS---LHY 57

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCT 275
           A  +F  I N D   +N +I G++ +     +L+LF  M  KS   P   +F  +L    
Sbjct: 58  ARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAA 117

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           + + + +GL L   ++  YG++  L     ++ + A    +  A K  +E +      + 
Sbjct: 118 NCRALTNGLQL-HCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMI------EP 170

Query: 336 NV--WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           N+  W A+++AC     ++   +V+R +    +T ++  +  Y 
Sbjct: 171 NIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYT 214


>gi|224133640|ref|XP_002327644.1| predicted protein [Populus trichocarpa]
 gi|222836729|gb|EEE75122.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 147/445 (33%), Positives = 236/445 (53%), Gaps = 20/445 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +++ Y  ++ P  ++  Y +ML  GF PN+YTF  L   C  +G     G   H   VK 
Sbjct: 118 VVKAYSLSSEPNKALVFYFEMLKSGFCPNSYTFVSLFGCCAKVG-CAKLGKKYHGQAVKN 176

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V +SL+  Y     MG A+ +FD+   RD+V+W +++DGY  +G+   A  LF
Sbjct: 177 GVDRILPVENSLIHCYGCCGDMGLAKKVFDEMSHRDLVSWNSIIDGYATLGELGIAHGLF 236

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E MPERN VSW+ +++ Y + ++   VL LFR+M   GM+ N+S +VSVL+AC     + 
Sbjct: 237 EVMPERNVVSWNILISGYLKGNNPGCVLMLFRKMMNDGMRGNDSTIVSVLSACGRSARLR 296

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  VH +  +     NVI  T ++DMY++C  V  A  +F+ +  ++ G WNAMI G  
Sbjct: 297 EGRSVHGFIVKKFSSMNVIHETTLIDMYNRCHKVEMARRIFDKVVRRNLGCWNAMILGHC 356

Query: 241 MNGDAKKSLELFDRMV-------KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           ++G+    LELF  MV       +    P E TF+ VL  C  A ++ +G N F  M   
Sbjct: 357 LHGNPDDGLELFKDMVDRAGLGKRDSVHPDEVTFIGVLCACARAGLLTEGKNFFSQMIYN 416

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFI------EEKMGGLGGGDANVWGALLSACRI 347
           +G++P   H+ C+ +L ARAG+++EAE  +      EE M      ++ VW  LL++CR 
Sbjct: 417 HGLKPNFAHFWCMANLYARAGLIQEAEDILRTTQEEEEDM----PLESLVWANLLNSCRF 472

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGC 406
            G + +G R+   L +M   +   + L  N+Y   G WD +   V+ L+      + PGC
Sbjct: 473 QGNVALGERIANSLIDMEPWNILHYRLLLNVYAVGGRWD-DVAMVKDLVKTKMKGRTPGC 531

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEI 431
           +++++  +V  +  G     + GE+
Sbjct: 532 NLVDLKEIVHNYEVGRLLPERIGEL 556



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/299 (19%), Positives = 127/299 (42%), Gaps = 50/299 (16%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++  +   GD +    +F+ +        + ++ AYS  S+  + L  + +M + G  PN
Sbjct: 87  LLKHFADFGDIDYTIFIFKFIASPGTFVVNNVVKAYSLSSEPNKALVFYFEMLKSGFCPN 146

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
               VS+   CA +G    G   H  A +  +++ + +  +++  Y  CG +  A  VF+
Sbjct: 147 SYTFVSLFGCCAKVGCAKLGKKYHGQAVKNGVDRILPVENSLIHCYGCCGDMGLAKKVFD 206

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKS-------------------------------LEL 251
            +S++D  +WN++I G A  G+   +                               L L
Sbjct: 207 EMSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLKGNNPGCVLML 266

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL-------FENMSAVYGVEPQLEHYA 304
           F +M+  G +  ++T V+VL+ C  +  +R+G ++       F +M+ +        H  
Sbjct: 267 FRKMMNDGMRGNDSTIVSVLSACGRSARLREGRSVHGFIVKKFSSMNVI--------HET 318

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
            ++D+  R   VE A +  ++ +      +   W A++    ++G  + G  +++ + +
Sbjct: 319 TLIDMYNRCHKVEMARRIFDKVV----RRNLGCWNAMILGHCLHGNPDDGLELFKDMVD 373


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  265 bits (677), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 238/434 (54%), Gaps = 36/434 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q+     ++  +  ML +GF+PN +T   L+KA    GP ++ G  +HA  +K+
Sbjct: 177 LISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT-GPSDHHGRQLHAFSLKY 235

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  +  V SSLL+ Y+                      W  M            A+ +F
Sbjct: 236 GYDMNVHVGSSLLDMYA---------------------RWAHM----------REAKVIF 264

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  +N VSW+A++A ++R  + + V+ LF QM   G +P      SV TACA  G++ 
Sbjct: 265 NSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLE 324

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG WVH++  +   +    +   ++DMY+K G +  A  VF  +  +D  +WN++ISG A
Sbjct: 325 QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYA 384

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   ++L+LF++M+K+  QP E TF++VLT C+H+ ++ +G   FE M   + +E Q+
Sbjct: 385 QHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQV 443

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            H+  VVDLL RAG + EA KFIEE         A VWGALL +CR++  +++G     +
Sbjct: 444 AHHVTVVDLLGRAGRLNEANKFIEEMP---IKPTAAVWGALLGSCRMHKNMDLGVYAAEQ 500

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   D   HVL  NIY  AG   +A KVRK++ E+G+KK+P CS +E+   V  F+A
Sbjct: 501 IFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVA 560

Query: 421 GDNRHAQAGEIYRV 434
            D+ H    EI R+
Sbjct: 561 NDDSHPMREEIQRM 574



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 194/422 (45%), Gaps = 69/422 (16%)

Query: 19  LDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           LD+++ G  EP    +  ++  C  L  L+  G  +HAH+    F ED            
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQ-GRAIHAHIQSSTF-ED------------ 138

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                             D+V    +++ Y K G  E A++LF+KMP ++ VSW+ +++ 
Sbjct: 139 ------------------DLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           YS+     E L+LF +M  +G +PNE  L S+L A     +   G  +H+++ +Y  + N
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMN 240

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + ++++DMY++  H+  A  +F  ++ K+  +WNA+I+G A  G+ +  + LF +M++
Sbjct: 241 VHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLR 300

Query: 258 SGTQPTETTFVAVLTTCT-----------HAKMVRDG-------LNLFENMSAVYG---- 295
            G +PT  T+ +V T C            HA +++ G        N   +M A  G    
Sbjct: 301 QGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKD 360

Query: 296 --------VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
                   V+  +  +  ++   A+ G+  EA +  E+ +      +   + ++L+AC  
Sbjct: 361 AKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSH 420

Query: 348 YGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGC 406
            G ++ G   +  + +  I    + HV   ++   AG   EAN   K I E  M  KP  
Sbjct: 421 SGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEAN---KFIEE--MPIKPTA 475

Query: 407 SV 408
           +V
Sbjct: 476 AV 477


>gi|357141422|ref|XP_003572219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Brachypodium distachyon]
          Length = 571

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 164/458 (35%), Positives = 234/458 (51%), Gaps = 59/458 (12%)

Query: 2   IRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLEN-----FGMFVHA 55
           IR       P L+V  Y  ML +    PNNYT+PPL+ AC  L P         G  VHA
Sbjct: 64  IRSLAHGPRPHLAVALYRSMLLNPLSNPNNYTYPPLLAACARLLPAHPPREAAAGTAVHA 123

Query: 56  HVVKFGF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE 114
            + + G    D F+ +S+L FY+                                 GD  
Sbjct: 124 SLFRRGLESRDRFISASMLSFYA-------------------------------AAGDLP 152

Query: 115 NARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            ARE+F++ P  +R+   W++++ AY     +  VL LFRQM    +  +E  L++V++A
Sbjct: 153 AAREVFDRSPPNQRDLALWNSLLHAYLSQGLYTHVLRLFRQM----VATDEVTLLAVVSA 208

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C+HLGA+  G W H+Y  R        L TA+++MY +CG V SA SVF  + +KD   W
Sbjct: 209 CSHLGALDTGRWAHAYHARTCRNTTRNLGTALLNMYMRCGDVESAWSVFHEMLDKDVRTW 268

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           + MI+G+A+NG  + +L+LF  M   G  P   T  AVL+ C+HA MV +G      M  
Sbjct: 269 SVMIAGLAVNGLPRDALKLFAEMKNIGVDPDSITMTAVLSACSHAGMVDEGKMFLHCMPI 328

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
            Y ++P +EHY CVVDLL RAG +EEA   IE         D  +WGALL ACR +  ++
Sbjct: 329 EYHLQPTIEHYGCVVDLLGRAGQLEEALALIETVP---FKADVALWGALLVACRAHKNVD 385

Query: 353 VGNRVWRKLAEMGITDFSTH-----VLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGC 406
           +G     ++A M I     H     V   N Y  AG WD+   +VR  + E  + K PG 
Sbjct: 386 MG-----QMAAMEILKLDPHHAGACVFLSNAYAAAGKWDL-VQEVRSSMKEHRIYKPPGS 439

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           S++E++GVV EFL+GD+ H Q+  IY ++    K  +L
Sbjct: 440 SIVELDGVVYEFLSGDHSHPQSDRIYAMLDEVCKTLSL 477


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 232/419 (55%), Gaps = 15/419 (3%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF---GFGEDPFVVSSLLEFYSLV 79
           D+ F P  + F PL K+        +      AH V     GF +  FV +SL+  Y   
Sbjct: 141 DLPFLP--FAFSPLAKSAAAA---RSLPAAAGAHAVSLLLGGFDKHRFVENSLIGAYVAC 195

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
             +G AR + D+   +DV++WT++V  Y +  D  +A E+F   P ++ V+W+A++  Y+
Sbjct: 196 GDVGAARKVLDEMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMVTGYA 255

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           + +   + L  F QM   GM  +E  L   ++ACA LGA+ + +W+   A R  L +NV+
Sbjct: 256 QNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLGRNVV 315

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KS 258
           + + +VDMY+KCG +  A  VFEG+  K+   +++MI G+A +G A  ++ LF+ MV ++
Sbjct: 316 VGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRA 375

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
             +P   TF+ VLT C+HA MV++G   F  M   YG+ P  +HY C+VDLL RAG+V E
Sbjct: 376 DVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIE 435

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           A   ++       GG   VWGALL ACRI+G  +V     + L ++       +VL  N 
Sbjct: 436 ALDLVKSMTVEPHGG---VWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSNT 492

Query: 379 YKEAG-WDMEANKVRKLISETGMKKKPGCSVIE-VNGVVEEFLAGDNRHAQAGEIYRVI 435
              AG WD E +KVRKL+   G+KK P  S  E  +G+V +F AGDN H    EI + +
Sbjct: 493 LASAGEWD-EVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTL 550



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 106/249 (42%), Gaps = 35/249 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q   P  ++  +  M   G   +  +    I AC  LG +    +++     + 
Sbjct: 250 MVTGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRR-AVWIQEIADRS 308

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G                               R+VV  + +VD Y K G  + A  +F
Sbjct: 309 GLG-------------------------------RNVVVGSGLVDMYAKCGLIDEACRVF 337

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
           E M E+N  ++S+++   +      + ++LF  M +   ++PN    + VLTAC+H G +
Sbjct: 338 EGMQEKNVYTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMV 397

Query: 180 TQGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G +  +  K RY +  +    T +VD+  + G V  AL + + ++     G W A++ 
Sbjct: 398 KEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLG 457

Query: 238 GVAMNGDAK 246
              ++G+ K
Sbjct: 458 ACRIHGNTK 466


>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 155/430 (36%), Positives = 232/430 (53%), Gaps = 50/430 (11%)

Query: 18  YLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           Y  ML+ G   P+ +TFP ++KAC  +  L   G  VH  +VK GF  D +V + L+ FY
Sbjct: 119 YRKMLERGESAPDKHTFPFVLKACAYIFGLSE-GKQVHCQIVKHGFSGDVYVNNGLIHFY 177

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
                                          G  G  + AR++F++MPER+ VSW++++ 
Sbjct: 178 -------------------------------GSCGCLDLARKVFDEMPERSLVSWNSMID 206

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR---YH 193
           A  R+ ++   L LFR MQ+   +P+   + SVL+ACA LG+++ G W H +  R     
Sbjct: 207 ALVRVGEYDSALQLFRDMQK-SFEPDGYTMQSVLSACAGLGSLSLGTWSHVFLLRNCDVD 265

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +  +V++  ++++MY KCG +  A  VF+G+   D  +WNAMI G A +G A++++  FD
Sbjct: 266 VAMDVLIKNSLIEMYCKCGSLRMAEQVFQGMRKHDLASWNAMILGFATHGKAEEAMNCFD 325

Query: 254 RMVKSG--TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
            MVK G   +P   TFVA+L  C H  MV  G   F+ M   YG+EP LEHY C++DLLA
Sbjct: 326 CMVKEGKNVKPNSVTFVALLIACNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLA 385

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDFS 370
           RAG + EA   I+  M      DA +W +LL AC   G  +E+   + R +      + S
Sbjct: 386 RAGYITEA---IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTMEDNQS 442

Query: 371 T-------HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
           +       +VL   +Y  A    +   VRKL+S+ G++K+PGCS IE+NG+  EF AGD 
Sbjct: 443 SNSNCSGAYVLLSRVYASANRWNDVGIVRKLMSDHGIRKEPGCSSIEINGISNEFFAGDT 502

Query: 424 RHAQAGEIYR 433
            H Q  +IY+
Sbjct: 503 SHPQTKQIYQ 512



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 39/224 (17%)

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKR--YHLEK-NVILATAVVDMYSKCGHVHSALSVFE 222
           ++S+   C+ +  + Q   +H++  R  Y  E   + L   ++ + S    V+ A  VF+
Sbjct: 32  ILSLAETCSDMSQLKQ---LHAFTLRTTYPDEPATLFLYGKILQLSSSFSDVNYAFRVFD 88

Query: 223 GISNKDAGAWNAMISGVAMNGDAK-KSLELFDRMVKSG-TQPTETTFVAVLTTC------ 274
            I N  +  WN +I   A +   K ++  L+ +M++ G + P + TF  VL  C      
Sbjct: 89  SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESAPDKHTFPFVLKACAYIFGL 148

Query: 275 -----THAKMVRDGL--NLFENMSAV--YGV---------------EPQLEHYACVVDLL 310
                 H ++V+ G   +++ N   +  YG                E  L  +  ++D L
Sbjct: 149 SEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 208

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            R G  + A +   + M      D     ++LSAC   G + +G
Sbjct: 209 VRVGEYDSALQLFRD-MQKSFEPDGYTMQSVLSACAGLGSLSLG 251


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 233/433 (53%), Gaps = 38/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY      +L++  Y  M D G  P+ +TFP ++KAC  L  +E  G  +H  V++ 
Sbjct: 73  MIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEE-GKKIHKDVIRS 131

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV ++L                               +D Y K G  E+AR++F
Sbjct: 132 GLESDVFVGAAL-------------------------------IDMYAKCGCVESARQVF 160

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +K+ ER+ V W++++A YS+     E L+L R M   G+KP E   V  + A A  G + 
Sbjct: 161 DKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLP 220

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG  +H Y+ R+  E N  + TA++DMY+K G V+ A S+FE +  K   +WNAMI+G A
Sbjct: 221 QGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYA 280

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A ++L+LF  M K    P   TFV VL  C+H  ++ +G   F +M + + + P +
Sbjct: 281 MHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTV 339

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C++DLL   G +EEA K I E        DA VWGALL +C+I+G +E+G     K
Sbjct: 340 QHYTCMIDLLGHCGRLEEAYKLIMEMR---VEPDAGVWGALLHSCKIHGNVEMGELALEK 396

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   D   +V+  N+Y +AG WD  A ++R L+   G+KK   CS IEV   V  FL
Sbjct: 397 LVELEPDDGGNYVILSNMYAQAGKWDGVA-RLRDLMMNKGLKKSIACSWIEVGNKVHAFL 455

Query: 420 AGDNRHAQAGEIY 432
           + D  H ++  IY
Sbjct: 456 SEDTSHPKSEAIY 468



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 138/292 (47%), Gaps = 33/292 (11%)

Query: 33  FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS 92
           +  L+++CV+   +E  G  +HA + + G   +P + + L+  Y + + +  A  LFD+ 
Sbjct: 4   YASLLQSCVVRKAIEP-GKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRI 62

Query: 93  PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
             R++  W  M+ GY   G +E A                               +SL+ 
Sbjct: 63  SKRNLFLWNVMIRGYAWNGPYELA-------------------------------ISLYY 91

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           QM++ G+ P++     VL AC+ L A+ +G  +H    R  LE +V +  A++DMY+KCG
Sbjct: 92  QMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCG 151

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            V SA  VF+ I  +D   WN+M++  + NG   +SL L   M  +G +PTE TFV  + 
Sbjct: 152 CVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIA 211

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
                 ++  G  L    S  +G E   +    ++D+ A++G V  A    E
Sbjct: 212 ASADNGLLPQGKEL-HGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFE 262



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 5/176 (2%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           S+L +C    AI  G  +H+   +  +  N +LAT +V++Y  C  + +A  +F+ IS +
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           +   WN MI G A NG  + ++ L+ +M   G  P + TF  VL  C+    + +G  + 
Sbjct: 66  NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
           +++    G+E  +   A ++D+ A+ G VE A +  ++    +   D   W ++L+
Sbjct: 126 KDVIRS-GLESDVFVGAALIDMYAKCGCVESARQVFDK----IDERDVVCWNSMLA 176


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 235/439 (53%), Gaps = 35/439 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q+   + ++  +  MLD G +P N T    + AC  LG LE  G FVH  V + 
Sbjct: 203 MIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLER-GKFVHKLVDQL 261

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  V++SL+  YS                               K    + A ++F
Sbjct: 262 KLDSDVSVMNSLISMYS-------------------------------KCKRVDIAADIF 290

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +  +  VSW+A++  Y++     E L+ F +MQ   +KP+   +VSV+ A A L    
Sbjct: 291 KNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPR 350

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           Q  W+H    R  L+KNV + TA+VDMY+KCG +H+A  +F+ ++ +    WNAMI G  
Sbjct: 351 QAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYG 410

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  K S+ELF  M K   +P + TF+  L+ C+H+ +V +GL  FE+M   YG+EP +
Sbjct: 411 THGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTM 470

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY  +VDLL RAG + +A  FI +KM    G    V+GA+L AC+I+  +++G +   +
Sbjct: 471 DHYGAMVDLLGRAGRLNQAWDFI-QKMPIKPG--ITVYGAMLGACKIHKNVDLGEKAAFE 527

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + ++   D   HVL  NIY  A    +  KVR ++ ++G++K PGCS++E+   V  F +
Sbjct: 528 IFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYS 587

Query: 421 GDNRHAQAGEIYRVIHSFL 439
           G   H Q+ +IY  + + +
Sbjct: 588 GTTSHPQSKKIYSYLETLV 606



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 148/324 (45%), Gaps = 33/324 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q  F K+++   L M + G  P++ T   ++ A V    L   GM VH +V++ 
Sbjct: 102 MISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPA-VADTRLLRIGMAVHGYVLRA 160

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF     V ++L++ YS    +  AR +FD    R VV+W +M+DGY + GD E A  +F
Sbjct: 161 GFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIF 220

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KM +                                G++P    ++  L ACA LG + 
Sbjct: 221 QKMLDE-------------------------------GVQPTNVTVMGALHACADLGDLE 249

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G +VH    +  L+ +V +  +++ MYSKC  V  A  +F+ + NK   +WNAMI G A
Sbjct: 250 RGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYA 309

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG   ++L  F  M     +P   T V+V+       + R        +     ++  +
Sbjct: 310 QNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQA-KWIHGLVIRRFLDKNV 368

Query: 301 EHYACVVDLLARAGMVEEAEKFIE 324
                +VD+ A+ G +  A K  +
Sbjct: 369 FVMTALVDMYAKCGAIHTARKLFD 392



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 32/274 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M++GY +++    ++  +  M      P  Y F  L+K C     L+  G  +H  V+  
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKR-GKEIHGSVITS 59

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + F ++ ++  Y+   ++  A  +FD+ P+RD+V W TM+ GY + G        F
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNG--------F 111

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            K+                        L L  +M E G +P+   +VS+L A A    + 
Sbjct: 112 AKV-----------------------ALMLVLRMSEEGHRPDSITIVSILPAVADTRLLR 148

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G+ VH Y  R   E  V ++TA+VDMYSKCG V  A  +F+G+ ++   +WN+MI G  
Sbjct: 149 IGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYV 208

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
            +GDA+ ++ +F +M+  G QPT  T +  L  C
Sbjct: 209 QSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHAC 242



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 122/266 (45%), Gaps = 8/266 (3%)

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           ++  Y++ S     LS F +M+   ++P       +L  C     + +G  +H       
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
              N+   T VV+MY+KC  ++ A ++F+ +  +D   WN MISG A NG AK +L L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           RM + G +P   T V++L      +++R G+ +   +    G E  +     +VD+ ++ 
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRA-GFESLVNVSTALVDMYSKC 179

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G V  A    +    G+       W +++      G  E    +++K+ + G+   +  V
Sbjct: 180 GSVSIARVIFD----GMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTV 235

Query: 374 L-SYNIYKEAGWDMEANK-VRKLISE 397
           + + +   + G D+E  K V KL+ +
Sbjct: 236 MGALHACADLG-DLERGKFVHKLVDQ 260


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 229/421 (54%), Gaps = 37/421 (8%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           LS+F +  ML  G EP+ +T+  ++KAC     L N GM +H  ++K   G D FV  +L
Sbjct: 462 LSLFVW--MLQSGMEPDEFTYGSVLKACAGWQAL-NCGMEIHNRIIKSRLGLDSFVGIAL 518

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           ++ YS                               K G  E A +L +++ E+  VSW+
Sbjct: 519 IDMYS-------------------------------KCGMMEKAEKLHDRLAEQTVVSWN 547

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
           AI++ +S     +E    F +M E+G+ P+     ++L  CA+L  +  G  +H+   + 
Sbjct: 548 AIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKK 607

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            L+ +  +++ +VDMYSKCG++     +FE   N+D   WNAM+ G A +G  +++L++F
Sbjct: 608 ELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIF 667

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
           + M     +P   TF+AVL  C H  +V  GL+ F +M + YG++PQLEHY+CVVD++ R
Sbjct: 668 EYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGR 727

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
           +G V +A + IE   G     DA +W  LLS C+I+G +EV  +    + ++   D + +
Sbjct: 728 SGQVSKALELIE---GMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAY 784

Query: 373 VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           VL  NIY  AG   E  K+RK++   G+KK+PGCS IE+   V  FL GD  H ++ EIY
Sbjct: 785 VLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIY 844

Query: 433 R 433
            
Sbjct: 845 E 845



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 177/367 (48%), Gaps = 39/367 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G +Q +  +  +  + +M   G   +  TF  + ++C  L  L   G  +H H +K 
Sbjct: 246 IIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALR-LGSQLHGHALKT 304

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG                                DVV  T  +D Y K  +  +A++LF
Sbjct: 305 DFG-------------------------------TDVVIGTATLDMYMKCNNLSDAQKLF 333

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +P  N  S++AI+  Y+R     E L +FR +Q+ G+  +E  L     ACA +    
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDL 393

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +GL VH  + +   + N+ +A A++DMY KCG +  A  VFE + ++DA +WNA+I+   
Sbjct: 394 EGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHE 453

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQ 299
            NG+ +K+L LF  M++SG +P E T+ +VL  C   + +  G+ +    + +  G++  
Sbjct: 454 QNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSF 513

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +     ++D+ ++ GM+E+AEK  +     L       W A++S   +  + E   + + 
Sbjct: 514 VG--IALIDMYSKCGMMEKAEKLHDR----LAEQTVVSWNAIISGFSLQKQSEEAQKTFS 567

Query: 360 KLAEMGI 366
           K+ EMG+
Sbjct: 568 KMLEMGV 574



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 128/237 (54%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G   HA ++   F    FV + L++ Y     +  A  +FD  P RD V+W  M+ GY  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
            GD   A++LF+ MPER+ VSW+++++ Y    D ++V+ +F QM  +G   + +    V
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L +C+ L     G+ +H  A +   + +V+  +A++DMY+KC  +  ++  F  +  K+ 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            +W+A+I+G   N D +  LELF  M K+G   +++TF +V  +C     +R G  L
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQL 297



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 159/346 (45%), Gaps = 41/346 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFG--MFVHAHVV 58
           +I GY+     +  +  +L M  MG   +  TF  ++K+C     LE+ G  + +H   V
Sbjct: 145 LISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSC---SSLEDHGGGIQIHGLAV 201

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K GF                               D DVVT + ++D Y K    + + +
Sbjct: 202 KMGF-------------------------------DCDVVTGSALLDMYAKCKKLDCSIQ 230

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
            F  MPE+N VSWSAI+A   +  D +  L LF++MQ+ G+  ++S   SV  +CA L A
Sbjct: 231 FFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSA 290

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +H +A +     +V++ TA +DMY KC ++  A  +F  + N +  ++NA+I G
Sbjct: 291 LRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVG 350

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A +    ++L +F  + KSG    E +       C   K   +GL +   +S     + 
Sbjct: 351 YARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQV-HGLSMKSLCQS 409

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +     ++D+  + G + EA    EE +      DA  W A+++A
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMV----SRDAVSWNAIIAA 451



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 130/232 (56%), Gaps = 5/232 (2%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++     ++D YGK G    A  +FE+M  R+AVSW+AI+AA+ +  + ++ LSLF  M 
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 469

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + GM+P+E    SVL ACA   A+  G+ +H+   +  L  +  +  A++DMYSKCG + 
Sbjct: 470 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMME 529

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  + + ++ +   +WNA+ISG ++   ++++ + F +M++ G  P   T+  +L TC 
Sbjct: 530 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 589

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEE 325
           +   V  G  +    + +   E Q + Y  + +VD+ ++ G +++ +   E+
Sbjct: 590 NLVTVELGKQIH---AQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEK 638



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 36/229 (15%)

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +   C+   A+  G   H+       +  V +   ++ MY KC  +  A  VF+G+  +D
Sbjct: 48  IFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRD 107

Query: 229 AGAWNAM-------------------------------ISGVAMNGDAKKSLELFDRMVK 257
             +WNAM                               ISG   NGD +K +++F +M +
Sbjct: 108 TVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGR 167

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            GT    TTF  VL +C+  +    G+ +   ++   G +  +   + ++D+ A+   ++
Sbjct: 168 MGTVFDRTTFAVVLKSCSSLEDHGGGIQI-HGLAVKMGFDCDVVTGSALLDMYAKCKKLD 226

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            + +F       +   +   W A+++ C     +  G  +++++ + G+
Sbjct: 227 CSIQFFHS----MPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGV 271



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 36/139 (25%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           M+ GY Q    +  L +F Y+ + ++  +PN+ TF  +++AC  +G +E    + H+ + 
Sbjct: 650 MVCGYAQHGLGEEALKIFEYMQLENV--KPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 707

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            +G   DP      LE YS V                        VD  G+ G    A E
Sbjct: 708 NYGL--DP-----QLEHYSCV------------------------VDIMGRSGQVSKALE 736

Query: 119 LFEKMP-ERNAVSWSAIMA 136
           L E MP E +AV W  +++
Sbjct: 737 LIEGMPFEADAVIWRTLLS 755


>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
 gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
          Length = 429

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 125/323 (38%), Positives = 210/323 (65%), Gaps = 8/323 (2%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR +FD+ P R++V+W  M+ GY    D + ARELF+ MPE++ VSW+ +++ Y++   +
Sbjct: 107 ARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRY 166

Query: 145 KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILA 201
           ++ L LFR MQ E  ++PNE  +VSVL+ACA+L A+ +G WVH++  ++   L     L 
Sbjct: 167 QDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLG 226

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            A++DMY+KCG    A+ +F  +  K+  AWNA+I+ +AMNG+A+ S++ F++M ++G +
Sbjct: 227 AALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEK 286

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P + TFV VLT C+H  +V +G   F++M++  GV+P+++HY C+VD+L RAG++EEAE+
Sbjct: 287 PNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEE 346

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST--HVLSYNIY 379
            I          D  V+GALL ACR++ + +V  RV  ++  + +    +  HVL  +IY
Sbjct: 347 LIRSM---PMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIY 403

Query: 380 KEAGWDMEANKVRKLISETGMKK 402
             AG   +  + R+++  +G++K
Sbjct: 404 AAAGKWFDVLEARQVVQRSGIRK 426



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 125/261 (47%), Gaps = 22/261 (8%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DVV+W T++ GY K G+ E+A+ +F++MP RN VSWS ++  Y+   +      +F +M 
Sbjct: 23  DVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMP 82

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCG 212
            +G   N     S++T  A  G +         A++   E   +N++   A++  YS   
Sbjct: 83  AIG--RNVVTWNSMVTGFARHGLL-------PLARKMFDEMPVRNLVSWNAMLRGYSVNS 133

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVL 271
            +  A  +F+ +  KD  +W  MISG A  G  + +LELF  M  +S  QP E T V+VL
Sbjct: 134 DMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVL 193

Query: 272 TTCTHAKMVRDGL---NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           + C +   + +G       +    V   E  L   A ++D+ A+ G  + A K       
Sbjct: 194 SACANLTALEEGRWVHAFIDKHKMVLNNEYNLG--AALIDMYAKCGRTDIAVKIFNS--- 248

Query: 329 GLGGGDANVWGALLSACRIYG 349
            L   + + W AL++   + G
Sbjct: 249 -LDRKNVSAWNALITRLAMNG 268


>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 138/355 (38%), Positives = 212/355 (59%), Gaps = 9/355 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF--VHAHVV 58
           M+  + Q  +   ++  Y +   +G + N ++F  ++  CV    L+  G+   VH  ++
Sbjct: 163 MVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCV---KLKEVGLTRQVHGQIL 219

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
             GF  +  + SS+L+ Y     MG AR LFD+   RDV+ WTTMV GY K GD ++A E
Sbjct: 220 VAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANE 279

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF +MPE+N VSW+A+++ Y+R     + L LF +M    ++P++    S L ACA + +
Sbjct: 280 LFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIAS 339

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMIS 237
           +  G  +H+Y  R + + N I+ +A++DMYSKCG +     VF+ + NK D   WN +IS
Sbjct: 340 LKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIIS 399

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
            +A +G  ++++++ D MV+SG +P + TFV +L  C+H+ +V+ GLN FE+MS  YG+ 
Sbjct: 400 ALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIV 459

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           P  EHYAC++DLL RAG  EE    + EKM      D  VW ALL  CRI+G IE
Sbjct: 460 PSQEHYACLIDLLGRAGCFEEVMDQL-EKMP--YKPDDRVWNALLGVCRIHGHIE 511



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 163/357 (45%), Gaps = 37/357 (10%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVVSSLLEFYSLVHKMG 83
           G   ++ T   L++ C     L   G  VH H+   G      F+ + L+  Y+   K  
Sbjct: 54  GLRLDSRTLASLLQHCADSRALRE-GKRVHLHLKLTGLKRPGTFLSNHLINMYAKCGKEV 112

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
            AR +FDK   R++ +W  M+ GY K+G  + AR+LF+KMPE++ VSW+ ++ A+++   
Sbjct: 113 EARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGY 172

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
           + E L  + + +++G++ N      VLT C  L  +     VH          NV+L+++
Sbjct: 173 WDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSS 232

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK----------------- 246
           V+D Y KCG +  A  +F+ +S +D  AW  M+SG A  GD K                 
Sbjct: 233 VLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSW 292

Query: 247 --------------KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
                         K+LELF +M+    +P + TF + L  C     ++ G  +   +  
Sbjct: 293 TALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLR 352

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +   +P     + ++D+ ++ G +    K  +     L   D  +W  ++SA   +G
Sbjct: 353 I-NFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL---DVVLWNTIISALAQHG 405


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 150/422 (35%), Positives = 227/422 (53%), Gaps = 43/422 (10%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G  P+  T   L+ AC  L  L+  G  +H  V KFG   D FV ++L        
Sbjct: 223 MLSSGMLPDKITLASLLYACSDLKNLQ-MGRLIHHIVYKFGLDLDHFVCAAL-------- 273

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                  VD YGK  + E+AR LF+KMPER+ V+W+ ++  Y+ 
Sbjct: 274 -----------------------VDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAE 310

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
             +  E L LF +M+E G+ P++  +V+V+ ACA LGA+ +   +  Y +R   + +VIL
Sbjct: 311 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 370

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA++DM++KCG V SA  +F+ +  K+  +W+AMI+    +G  +K+L+LF  M++SG 
Sbjct: 371 GTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGI 430

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P + T V++L  C+HA +V +GL  F  M   Y V   ++HY CVVDLL RAG ++EA 
Sbjct: 431 LPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEAL 490

Query: 321 KFIE----EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           K IE    EK       D  +WGA L ACR +  + +  +    L E+   +   ++L  
Sbjct: 491 KLIESMTVEK-------DEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLS 543

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           NIY  AG   +  K R L+S+  +KK PG + IEV+    +F  GD  H ++ EIY ++ 
Sbjct: 544 NIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLK 603

Query: 437 SF 438
           S 
Sbjct: 604 SL 605



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 171/312 (54%), Gaps = 38/312 (12%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + +++  G  P+NYT P +I+AC  L  L+  G  +H  V KFG   D FV ++L     
Sbjct: 18  FRELIRCGARPDNYTLPFVIRACRDLKNLQ-MGRLIHHIVYKFGLDLDHFVCAAL----- 71

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     VD Y K  + E+AR LF+KM ER+ V+W+ ++  
Sbjct: 72  --------------------------VDMYVKCREIEDARFLFDKMQERDLVTWTVMIGG 105

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y+      E L LF +M+E G+ P++  +V+V+ ACA LGA+ +   +  Y +R   + +
Sbjct: 106 YAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD 165

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           VIL TA++DMY+KCG V SA  +F+ +  K+  +W+AMI+    +G  +K+L+LF  M+ 
Sbjct: 166 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS 225

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC--VVDLLARAGM 315
           SG  P + T  ++L  C+  K ++ G  L  ++   +G++  L+H+ C  +VD+  +   
Sbjct: 226 SGMLPDKITLASLLYACSDLKNLQMG-RLIHHIVYKFGLD--LDHFVCAALVDMYGKCRE 282

Query: 316 VEEAEKFIEEKM 327
           +E+A +F+ +KM
Sbjct: 283 IEDA-RFLFDKM 293



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 25/227 (11%)

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           ++  ++++ D+      FR++   G +P+   L  V+ AC  L  +  G  +H    ++ 
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           L+ +  +  A+VDMY KC  +  A  +F+ +  +D   W  MI G A  G A +SL LF+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 254 RMVKSGTQPTETTFVAVLTTCT------HAKMVRDGLNLFE-NMSAVYGVEPQLEHYACV 306
           +M + G  P +   V V+  C        A+++ D +   +  +  + G          +
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA--------M 172

Query: 307 VDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGK 350
           +D+ A+ G VE A +    +EEK       +   W A+++A   +G+
Sbjct: 173 IDMYAKCGCVESAREIFDRMEEK-------NVISWSAMIAAYGYHGQ 212


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 141/412 (34%), Positives = 232/412 (56%), Gaps = 6/412 (1%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
             P+++ F  L+KAC  LG ++  G  VH H +   +  D  V SSL++ Y+    +  A
Sbjct: 38  LRPDDFVFSALVKACANLGSIK-LGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCA 96

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           +A+FD    ++ ++WT MV GY K G  E A ELF ++P +N  SW+A+++ + +     
Sbjct: 97  KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGL 156

Query: 146 EVLSLFRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           E  S+F +M+   +   +   L S++ ACA+L A   G  VH        +  V ++ A+
Sbjct: 157 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNAL 216

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KC  V +A  +F  + ++D  +W ++I G+A +G A+K+L L+D MV  G +P E
Sbjct: 217 IDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNE 276

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFV ++  C+H   V  G  LF++M+  YG+ P L+HY C++DLL R+G+++EAE  I 
Sbjct: 277 VTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIH 336

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL-AEMGITDFSTHVLSYNIYKEAG 383
                    D   W ALLSAC+  G+ ++G R+   L +     D ST++L  NIY  A 
Sbjct: 337 TMP---FPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILLSNIYASAS 393

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              + ++ R+ + +  ++K PG S +EV    E F AG+  HA   +I+R++
Sbjct: 394 LWGKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGETSHALKEDIFRLL 445



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 79/134 (58%), Gaps = 1/134 (0%)

Query: 123 MPERNAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           MP R+ ++W++++ A ++ +   K +          G++P++    +++ ACA+LG+I  
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  VH +        + ++ +++VDMY+KC  +  A +VF+ I  K+  +W AM+SG A 
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 242 NGDAKKSLELFDRM 255
           +G  +++LELF R+
Sbjct: 121 SGRKEEALELFRRL 134


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 152/446 (34%), Positives = 246/446 (55%), Gaps = 25/446 (5%)

Query: 1    MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
            ++ GY +  F   ++  +++M+ +  F PN  TF  ++ ACV      +    +H ++VK
Sbjct: 607  LLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSD-KEGIHGYIVK 665

Query: 60   FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             GFG+D +V ++L++ YS + ++  ++ +F +   RD+V+W TM+ G    G +++A  L
Sbjct: 666  RGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNL 725

Query: 120  FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
              +M  R                D  +    +     V  KPN   L++VL  CA L A+
Sbjct: 726  LHEMQRRQG-------------EDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAAL 772

Query: 180  TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             +G  +H+YA +  L  +V + +A+VDMY+KCG ++ A  VF+ +  ++   WN +I   
Sbjct: 773  GKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAY 832

Query: 240  AMNGDAKKSLELFDRMVKSG------TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
             M+G  +++LELF  M   G       +P E T++A+   C+H+ MV +GL+LF  M A 
Sbjct: 833  GMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKAS 892

Query: 294  YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            +GVEP+ +HYAC+VDLL R+G V+EA + I      L   DA  W +LL ACRI+  +E 
Sbjct: 893  HGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDA--WSSLLGACRIHQSVEF 950

Query: 354  GNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVN 412
            G    + L  +     S +VL  NIY  AG WD +A  VRK + E G++K+PGCS IE  
Sbjct: 951  GEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWD-QALGVRKKMKEMGVRKEPGCSWIEHG 1009

Query: 413  GVVEEFLAGDNRHAQAGEIYRVIHSF 438
              V +FL+GD  H Q+ E++  + + 
Sbjct: 1010 DEVHKFLSGDASHPQSKELHEYLETL 1035



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 125/256 (48%), Gaps = 32/256 (12%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           +N+ FP ++KA   +  L   G  +HAHV KFG                           
Sbjct: 329 DNFAFPAVLKAAAAVHDL-CLGKQIHAHVFKFG--------------------------- 360

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
              +P   V    ++V+ YGK GD   AR++F+ +P+R+ VSW++++A   R  +++  L
Sbjct: 361 --HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSL 418

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHL-GAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
            LFR M    + P    LVSV  AC+H+ G +  G  VH+Y  R + +       A+V M
Sbjct: 419 HLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLR-NGDLRTYTNNALVTM 477

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y++ G V+ A ++F     KD  +WN +IS ++ N   +++L     M+  G +P   T 
Sbjct: 478 YARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTL 537

Query: 268 VAVLTTCTHAKMVRDG 283
            +VL  C+  + +R G
Sbjct: 538 ASVLPACSQLERLRIG 553



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 178/412 (43%), Gaps = 49/412 (11%)

Query: 12  KLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSS 71
           +LS+  +  ML    +P ++T   +  AC  +      G  VHA+ ++ G     +  ++
Sbjct: 415 ELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNA 473

Query: 72  LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSW 131
           L+  Y+ + ++  A+ALF     +D+V+W T++    +   FE                 
Sbjct: 474 LVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFE----------------- 516

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
            A+M  Y  I D              G++P+   L SVL AC+ L  +  G  +H YA R
Sbjct: 517 EALMYVYLMIVD--------------GVRPDGVTLASVLPACSQLERLRIGREIHCYALR 562

Query: 192 Y-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
              L +N  + TA+VDMY  C        VF+G+  +    WNA+++G A N    ++L 
Sbjct: 563 NGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALR 622

Query: 251 LFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM-SAVYGVEPQLEHYACVVD 308
           LF  M+ +S   P  TTF +VL  C   K+  D   +   +    +G +  +++   ++D
Sbjct: 623 LFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQN--ALMD 680

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           + +R G VE ++       G +   D   W  +++ C + G+ +    +  ++      D
Sbjct: 681 MYSRMGRVEISKTIF----GRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGED 736

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
            S   + Y    + G   + N V      T M   PGC+ +   G  +E  A
Sbjct: 737 GSDTFVDYE--DDGGVPFKPNSV------TLMTVLPGCAALAALGKGKEIHA 780



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 152/380 (40%), Gaps = 66/380 (17%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFV 68
           F +  ++ YL ++D G  P+  T   ++ AC  L  L   G  +H + ++ G   E+ FV
Sbjct: 515 FEEALMYVYLMIVD-GVRPDGVTLASVLPACSQLERLR-IGREIHCYALRNGDLIENSFV 572

Query: 69  VSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
            ++L++ Y    +    R +FD    R V  W  ++ GY        AR  F+       
Sbjct: 573 GTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGY--------ARNEFD------- 617

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
                            + L LF +M  E    PN +   SVL AC      +    +H 
Sbjct: 618 ----------------DQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHG 661

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           Y  +    K+  +  A++DMYS+ G V  + ++F  ++ +D  +WN MI+G  + G    
Sbjct: 662 YIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDD 721

Query: 248 SLELFDRMVK------SGT------------QPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
           +L L   M +      S T            +P   T + VL  C     +  G  +   
Sbjct: 722 ALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIH-- 779

Query: 290 MSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
               Y V+ +L     V    VD+ A+ G +  A +  ++    +   +   W  L+ A 
Sbjct: 780 ---AYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQ----MPIRNVITWNVLIMAY 832

Query: 346 RIYGKIEVGNRVWRKLAEMG 365
            ++GK E    ++R +   G
Sbjct: 833 GMHGKGEEALELFRIMTAGG 852


>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
 gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
          Length = 528

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 240/434 (55%), Gaps = 24/434 (5%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGM-FVHAHVVKFGFGEDPFVVSSLLEFYS-L 78
           ML+    PNN+ +P ++K+       E F +  VHA +VK GF   P V +SL++ YS +
Sbjct: 94  MLNSNIRPNNFIYPHVLKSVK-----ERFLVDLVHAQIVKCGFLNYPVVETSLVDSYSKV 148

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
           +  +  A  +FD+  +R++V +T +V GY ++GD E    +F++M +R+  +W+A+++  
Sbjct: 149 LGGLRDAHKVFDEMSERNIVVFTVLVSGYLRVGDVEKGLMVFDEMVDRDVPAWNAVISGC 208

Query: 139 SRISDFKEVLSLFRQMQEV----------GMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           ++   F E + LFR+M             G KPN+  +V VL+AC H G +  G W+H Y
Sbjct: 209 TQNGFFSEGIRLFREMVFAAGLGEGGFCKGNKPNQVTVVCVLSACGHGGMLQLGKWIHGY 268

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             R+    +  ++ A+VDMY KCG +  A  VFE    K   +WN+MI+  A++G  + +
Sbjct: 269 VYRHGFVVDSFVSNALVDMYGKCGSLELARKVFEMDQRKGLTSWNSMINCYALHGKCEDA 328

Query: 249 LELFDRMVKS--GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
           +  F++MV+   G +P E TF+ +L  CTH  +V  G   FE M   YG+EPQ+ HY C+
Sbjct: 329 ITFFEKMVECGGGVRPDEVTFIGLLNACTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCL 388

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +DLL RAG  +EA   ++   G     D  VWG+LL+ C+++G+ ++     +KL E+  
Sbjct: 389 IDLLGRAGQFDEAMDVVK---GMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLVEIDP 445

Query: 367 TDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRH 425
            +     +  NIY + G WD   N   KL  +    K PGCS IEV+  V +F + D  +
Sbjct: 446 HNGGYGTMLANIYGQLGKWDEMRNVWSKLKQQKSY-KIPGCSWIEVDDKVHQFFSLDQSN 504

Query: 426 AQAGEIYRVIHSFL 439
            +  E+Y ++ S  
Sbjct: 505 PKTEELYNILESLF 518


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 153/447 (34%), Positives = 244/447 (54%), Gaps = 43/447 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++RG  Q+  P+ +V  Y +M   G  P+ YTF  ++KAC  L    N G  +H  VV+ 
Sbjct: 83  VLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSN-GFAIHGKVVRH 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKS---------------------------- 92
           GF  + +V ++L+ F++    +G A  LFD S                            
Sbjct: 142 GFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLF 201

Query: 93  ---PDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
              PD+D V W  M+ G  K  + ++ARELF++  E++ V+W+A+++ Y      KE LS
Sbjct: 202 DEMPDKDQVAWNVMITGCLKCREMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALS 261

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNVILAT----AV 204
           +F++M++ G  P+   ++S+L+ACA LG +  G  +H Y  +   +  ++ + T    A+
Sbjct: 262 IFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNAL 321

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KCG +  A+ VF G+ ++D   WN +I G+A++  A+ S+E+F+ M +    P E
Sbjct: 322 IDMYAKCGSIDRAIEVFRGMKDRDLSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNE 380

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+ V+  C+H+  V +G   F  M  +Y +EP ++HY C+VD+L RAG++EEA  F+E
Sbjct: 381 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVE 440

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +A VW  LL AC+IYG +E+G     KL  M   +   +VL  NIY   G 
Sbjct: 441 SMK---IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQ 497

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIE 410
           WD    KVRK+  +T +KK  G S+IE
Sbjct: 498 WD-GVQKVRKMFDDTRVKKPTGISLIE 523



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 111/247 (44%), Gaps = 9/247 (3%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G  + A +LFE++P+ +    + ++   ++    ++ ++L+ +M++ G+ P+      VL
Sbjct: 60  GALKYAHKLFEEIPKPDVSICNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVL 119

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC+ L   + G  +H    R+    N  +  A++  ++ CG +  A  +F+  +     
Sbjct: 120 KACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AW++M SG A  G   +++ LFD M        +  +  ++T C   + +     LF+  
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEM----PDKDQVAWNVMITGCLKCREMDSARELFDRF 235

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           +     E  +  +  ++      G  +EA    +E        D     +LLSAC + G 
Sbjct: 236 T-----EKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACAVLGD 290

Query: 351 IEVGNRV 357
           +E G R+
Sbjct: 291 LETGKRL 297


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 143/432 (33%), Positives = 234/432 (54%), Gaps = 34/432 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+++ F + ++  +  M       ++YT+  +  A   L  L + G  VHA  +K 
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCL-SLGKKVHARAIKS 404

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +   +S+                               + + Y K G  E+ R++F
Sbjct: 405 GLEVNYVSISN------------------------------AVANAYAKCGSLEDVRKVF 434

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +R+ +SW++++ AYS+ S++ + + +F  M+  G+ PN+    SVL +CA+L  + 
Sbjct: 435 NRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLE 494

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH    +  L+ +  + +A+VDMY+KCG +  A  VF  ISN D  +W A+I+G A
Sbjct: 495 YGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA 554

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G    +L+LF RMV+ G +P   TF+ VL  C+H  +V +GL  F+ M   YG+ P++
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEM 614

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL+R G + +A +FI          +  VW  LL ACR++G +E+G    +K
Sbjct: 615 EHYACIVDLLSRVGHLNDAMEFISRMP---VEPNEMVWQTLLGACRVHGNVELGELAAQK 671

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           +      + +T+VL  N Y E+G   +   +R L+ E G+KK+PGCS I VNG + +F A
Sbjct: 672 ILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQGVKKEPGCSWISVNGTLHKFYA 731

Query: 421 GDNRHAQAGEIY 432
           GD +H +  +IY
Sbjct: 732 GDQQHPEKDKIY 743



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 47/284 (16%)

Query: 16  FCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           FC  +M   G  P+ + +  +++ C+ L  +E  G  VHA +V  GF    FV ++LL  
Sbjct: 159 FC--EMQSQGIFPDQFAYSGILQICIGLDSIE-LGNMVHAQIVIRGFTSHTFVSTALLNM 215

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y+                               K+ + E++ ++F  M E N VSW+A++
Sbjct: 216 YA-------------------------------KLQEIEDSYKVFNTMTEVNVVSWNAMI 244

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             ++    + +   LF +M   G+ P+    + V  A   L  + +   V  YA    ++
Sbjct: 245 TGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVD 304

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            N ++ TA++DM SKCG +  A S+F    I+ +    WNAMISG   +G  +K+LELF 
Sbjct: 305 SNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFA 364

Query: 254 RMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNL 286
           +M ++       T+ +V                HA+ ++ GL +
Sbjct: 365 KMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEV 408



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 138/282 (48%), Gaps = 20/282 (7%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEK--MPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           D + +  T ++D   K G  + AR +F    +  R    W+A+++ Y R    ++ L LF
Sbjct: 304 DSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELF 363

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN-VILATAVVDMYSK 210
            +M +  +  +     SV  A A L  ++ G  VH+ A +  LE N V ++ AV + Y+K
Sbjct: 364 AKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAK 423

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
           CG +     VF  + ++D  +W ++++  +   +  K++E+F  M   G  P + TF +V
Sbjct: 424 CGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 483

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGV--EPQLEHYACV----VDLLARAGMVEEAEKFIE 324
           L +C +       L L E    V+G+  +  L+   C+    VD+ A+ G + +A+K   
Sbjct: 484 LVSCAN-------LCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFN 536

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
                +   D   W A+++    +G ++   +++R++ ++G+
Sbjct: 537 R----ISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGV 574



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           S    +V    +   Y K  D + A  LF++M +RN  SW+ ++A  +    F +    F
Sbjct: 100 SNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFF 159

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +MQ  G+ P++     +L  C  L +I  G  VH+         +  ++TA+++MY+K 
Sbjct: 160 CEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKL 219

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
             +  +  VF  ++  +  +WNAMI+G   N     + +LF RM+  G  P   TF+ V 
Sbjct: 220 QEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVA 279

Query: 272 TTCTHAKMVRDGLNLFENMSAV---YGVEPQLEHYACVVDLLARAGMVEEAE 320
                  M+RD +N  + +S      GV+        ++D+ ++ G ++EA 
Sbjct: 280 KA---IGMLRD-VNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEAR 327


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 229/418 (54%), Gaps = 48/418 (11%)

Query: 6    MQANFPKLSVF--CYL---DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            M   F K+  F  CY    +++  G +P+NYT P +IKAC     L + G  +H  V+K+
Sbjct: 1152 MIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDTVAL-DMGRLIHCVVLKY 1210

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G   D FV ++L                               VD Y K    E+A+ LF
Sbjct: 1211 GLHLDHFVCAAL-------------------------------VDMYAKCKVIEDAKLLF 1239

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            + MP ++ V+W+ ++  Y+   + KE L LF  ++E G  P++  +VS++ ACA LGA+ 
Sbjct: 1240 DVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMN 1299

Query: 181  QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            +  +VH Y  R     +VIL TA++DMY+KCG V SA  +F+ + +K+  +W+AMI+   
Sbjct: 1300 KARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYG 1359

Query: 241  MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             +G  KK+LELF  M+ SG  P   TFV++L  C+HA +V DGL L   M   +GV P +
Sbjct: 1360 YHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDI 1419

Query: 301  EHYACVVDLLARAGMVEEAEKFIE----EKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            +H+ C+VDLL RAG + EA +FIE    EK  GL       W +LL ACRI+ +I++  +
Sbjct: 1420 KHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGL-------WSSLLGACRIHKRIDLAEK 1472

Query: 357  VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
              + L E+   +   ++L  NIY  AG   +  K+R L+++  +KK PG + IE+  +
Sbjct: 1473 AAKSLLELQPQNPGNYILLSNIYANAGQWKDVAKIRDLMTKRKLKKIPGYTWIELKSI 1530



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 123/243 (50%), Gaps = 19/243 (7%)

Query: 115  NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
            +A  LF++MP++N VSWS ++  + ++ +F +    F+++   G++P+   L  V+ AC 
Sbjct: 1133 DAYALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACR 1192

Query: 175  HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
               A+  G  +H    +Y L  +  +  A+VDMY+KC  +  A  +F+ + +KD   W  
Sbjct: 1193 DTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTV 1252

Query: 235  MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC------THAKMVRDGLNLFE 288
            MI G A  G+AK+SL LFD + + G  P +   V+++  C        A+ V + +N   
Sbjct: 1253 MIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNR 1312

Query: 289  -NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
             ++  + G          ++D+ A+ G V+ A +  +     +   +   W A+++A   
Sbjct: 1313 FSLDVILGT--------AMIDMYAKCGDVDSAREIFD----NMHHKNVISWSAMIAAYGY 1360

Query: 348  YGK 350
            +G+
Sbjct: 1361 HGQ 1363



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 117/260 (45%), Gaps = 38/260 (14%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MI GY +    K S+  +  + + GF P+      ++ AC  LG + N   FVH +V + 
Sbjct: 1253 MIGGYAECGNAKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAM-NKARFVHEYVNRN 1311

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             F  D  + +++++ Y+    + +AR +FD    ++V++W+ M+  YG  G         
Sbjct: 1312 RFSLDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHG--------- 1362

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    K+ L LF  M   G+ PN    VS+L AC+H G + 
Sbjct: 1363 ----------------------QGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVE 1400

Query: 181  QGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
             GL + S   + + +  ++   T +VD+  + G +  A    E ++  KD G W++++  
Sbjct: 1401 DGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLWSSLLGA 1460

Query: 239  VAMNGDAKKSLELFDRMVKS 258
              ++    K ++L ++  KS
Sbjct: 1461 CRIH----KRIDLAEKAAKS 1476



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 159  MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSA 217
            M PN   L+S L  C ++  I Q   +H+       L  N+ +A  ++ +Y     +  A
Sbjct: 1080 MDPN--CLISTLLNCKNICQIKQ---LHALITTNSVLYNNLTVANKLLYVYVHHKCLTDA 1134

Query: 218  LSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
             ++F+ +  K+  +W+ MI G    G+  +  + F  ++++G QP   T   V+  C   
Sbjct: 1135 YALFDEMPQKNPVSWSIMIGGFVKVGEFMQCYKTFKELIRNGVQPDNYTLPFVIKACRDT 1194

Query: 278  KMVRDGLNLFENMSAVYGVEPQLEHYAC--VVDLLARAGMVEEAE 320
              +  G  L   +   YG+   L+H+ C  +VD+ A+  ++E+A+
Sbjct: 1195 VALDMG-RLIHCVVLKYGL--HLDHFVCAALVDMYAKCKVIEDAK 1236


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/440 (34%), Positives = 246/440 (55%), Gaps = 22/440 (5%)

Query: 6   MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGE 64
           M A F K+   C  ++ D   + +  ++  LI   V  G L+    +F     VK     
Sbjct: 122 MYAKFGKMG--CARNVFDEMPQRSEVSWTALICGYVRFGELDLASKLFDQMPQVK----- 174

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D  + +++++ +     M +AR LFD+   + V+TWTTM+ GY    D ++AR+LF+ MP
Sbjct: 175 DVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMP 234

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGL 183
           ERN VSW+ ++  Y +    +E + LF++MQ    + P++  ++SVL A +  GA++ G 
Sbjct: 235 ERNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGE 294

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           W H + +R +L+K V + TA++DMYSKCG +  A  +F+ +  K   +WNAMI G A+NG
Sbjct: 295 WCHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNG 354

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303
           +A  +L+LF  M K   +P E T +AV++ C H  +V +G   F+ M   +G+  ++EHY
Sbjct: 355 NAHAALDLFLTMAKE-EKPDEITMLAVISACNHGGLVEEGRKWFQMMRK-FGLNAKIEHY 412

Query: 304 ACVVDLLARAGMVEEAEKFIEE---KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            C+VDLL RAG +++AE  I     K  G+      +  + LSAC  Y  IE   R+ +K
Sbjct: 413 GCMVDLLGRAGNLKQAEHLITNMPFKPNGI------ILSSFLSACGQYKDIERAERILKK 466

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
             E+   +   +VL  N+Y  +  WD +   V+ ++ +   KK+ GCS+IE+N +V EF+
Sbjct: 467 AVELEPQNDGNYVLLRNLYAADKRWD-DFGMVKNMMRKNEAKKEVGCSLIEINYIVSEFI 525

Query: 420 AGDNRHAQAGEIYRVIHSFL 439
           +GD  H     I+ V+   L
Sbjct: 526 SGDTTHPHRQSIHLVLEKLL 545


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 131/341 (38%), Positives = 205/341 (60%), Gaps = 3/341 (0%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++V    M+D Y K G F  A+ +F+++P R+ VSW+ ++    +    K+ L LF  M+
Sbjct: 236 NLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMR 295

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
            +G+ P+   L SVL+ACA LG +  G WVH Y  +  ++ ++ + TA+VDMY+KCG + 
Sbjct: 296 TLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIE 355

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            AL +F  +S ++   WNA++ G+AM+G   ++L LF+ M+ SG +P E TF+A+LT C 
Sbjct: 356 MALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACC 415

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           H  +V +G   F+NMS +Y + P+LEHY C++DL  RAG++EEA   +E         D 
Sbjct: 416 HCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEA---VELARTMPMKPDV 472

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395
            +WG LL+AC   G IE+ +R+   + E+   D    VL  NI           ++R+L+
Sbjct: 473 LIWGLLLNACTTVGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLM 532

Query: 396 SETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
            + G++K PG SVIEV+G   EF+ GD  H Q  EIY+V++
Sbjct: 533 KDRGVRKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKVLN 573



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/357 (28%), Positives = 171/357 (47%), Gaps = 51/357 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-----GMFVHA 55
           +I GY+   FP+++V  Y  M+  GF P+ +TFP L+KAC       NF     G  VH 
Sbjct: 76  LINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKAC------SNFSGSREGRQVHG 129

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
            VVK G   D +V +SL+                                 YG  GDF  
Sbjct: 130 VVVKLGLLADHYVQNSLIR-------------------------------CYGACGDFSC 158

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ++F++M  R+ VSW+++++ + +   F E +S+F +M    ++P+ + LVSVL ACA 
Sbjct: 159 AGKVFDEMLVRDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSVLAACAR 215

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
            G +  G  +H   +R   + N++L  A++DMY K G  + A ++F+ +  +D  +W  M
Sbjct: 216 NGDLCTGKGIHGVIER-RFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIM 274

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G+  +   K+SLELF  M   G  P      +VL+ C     +  G  + E ++   G
Sbjct: 275 ITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQ-RG 333

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           ++  +     +VD+ A+ G +E A K        +   +   W ALL    ++G + 
Sbjct: 334 IKWDIHIGTAIVDMYAKCGCIEMALKIFYS----MSQRNTFTWNALLCGLAMHGLVH 386



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 122/259 (47%), Gaps = 34/259 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G +Q++ PK S+  +  M  +G  P+      ++ AC  LG L+ FG +VH ++ + 
Sbjct: 274 MITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLD-FGTWVHEYINQR 332

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D             +H +GTA                 +VD Y K G  E A ++F
Sbjct: 333 GIKWD-------------IH-IGTA-----------------IVDMYAKCGCIEMALKIF 361

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             M +RN  +W+A++   +      E L+LF  M   G+KPNE   +++LTAC H G + 
Sbjct: 362 YSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVD 421

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
           +G  +  + +K Y+L   +     ++D++ + G +  A+ +   +  K D   W  +++ 
Sbjct: 422 EGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNA 481

Query: 239 VAMNGDAKKSLELFDRMVK 257
               G+ + S  + D +++
Sbjct: 482 CTTVGNIELSHRIQDYILE 500


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 145/434 (33%), Positives = 242/434 (55%), Gaps = 9/434 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y +AN  + +V C+  ML  G  P+  T   ++ AC  L  LE  G  +H  V + 
Sbjct: 210 LIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLE-LGRSLHLLVEEK 268

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD---KSPDRDVVTWTTMVDGYGKMGDFENAR 117
           G      +V +L++ Y+     G A+ +FD   + P     +W  ++DGY K G  + AR
Sbjct: 269 GMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ--SWNAIIDGYCKHGHVDVAR 326

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF++M  R+ ++++++M  Y      +E L LF  M+   ++ +   +V++LTACA LG
Sbjct: 327 SLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLG 386

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ QG  +H+  ++  +E ++ L TA++DMY KCG V  A  VF+ +  +D   W AMI+
Sbjct: 387 ALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIA 446

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+A NG  K +LE F +M   G QP   +++AVLT C+H+ ++ +G   F+ M  +Y + 
Sbjct: 447 GLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIH 506

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           PQ+EHY C++DLL R+G+++EA   ++         +A +W ++LSACR++  I++    
Sbjct: 507 PQIEHYGCMIDLLGRSGLLDEAMDLVKTMP---IQPNAVIWASILSACRVHKHIDLAQCA 563

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
              L ++   +   +V  YNIY ++     A+K+R L+ E  +KK  G S I V G V +
Sbjct: 564 AEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHK 623

Query: 418 FLAGDNRHAQAGEI 431
           F+  D  H +  EI
Sbjct: 624 FVVSDKSHPRILEI 637



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 137/284 (48%), Gaps = 8/284 (2%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM--FVHAHVVKFGF-GEDPF 67
           P      +  M   G  P+ +TF  L K         +  +   +HA  ++       PF
Sbjct: 84  PHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPF 143

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           V +SL+  Y  +     AR  FD+   +D V WT ++ G  KMG   + + L  + P R+
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
            +SW++++AAYSR +  +E +  F+ M   G+ P+E  +++VL+ACA L  +  G  +H 
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHL 263

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAK 246
             +   +  +  L  A++DMY+KCG    A  VF+ +       +WNA+I G   +G   
Sbjct: 264 LVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVD 323

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            +  LFD M          TF +++T   H+  +R+ L LF +M
Sbjct: 324 VARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREALLLFMSM 363



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 43/298 (14%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  LF++MP    +  +A+ A     SD      LFR+M+  G++P +      L  C+ 
Sbjct: 56  ALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRP-DGFTFHFLFKCSS 114

Query: 176 LGAITQGLW----VHSYAKRYHLEKNV-ILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
             +    L     +H+   R  L      ++ +++ MY + G    A   F+ I  KDA 
Sbjct: 115 SSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAV 174

Query: 231 AWNAMISGVAMNG-------------------------------DAKKSLELFDRMVKSG 259
           AW  +ISG+A  G                                A++++  F  M+  G
Sbjct: 175 AWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG 234

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             P E T +AVL+ C   K +  G +L   +    G+         ++D+ A+ G    A
Sbjct: 235 IAPDEVTVIAVLSACAKLKDLELGRSL-HLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293

Query: 320 EKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           ++  +     LG G     W A++     +G ++V   ++ ++    I  F++ +  Y
Sbjct: 294 QQVFD----ALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGY 347


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 155/472 (32%), Positives = 245/472 (51%), Gaps = 72/472 (15%)

Query: 29  NNYTFPPLIKACVILG--PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           +++T+  LIKA    G  P+      VH+HVVK G  ED FV ++L++ YS       AR
Sbjct: 5   DSFTYSFLIKALSAAGVAPVRA----VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60

Query: 87  ALFDKSPDRDV-------------------------------VTWTTMVDGYGKMGDFEN 115
            +FD+ P+RDV                               V+W T++DGY K G+ E 
Sbjct: 61  KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFK------------------------------ 145
           A ELF++MPERN VSWS +++ Y +  D +                              
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180

Query: 146 -EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E   LF QM+E  ++ + + +VS+L ACA  G+++ G  +H Y ++ +L ++  +  A+
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 240

Query: 205 VDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +DM+ KCG V+ A  VF+  +  KD+ +WN++I G AM+G   K+LELF +M + G  P 
Sbjct: 241 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 300

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             T + VL+ CTH   V +G   F NM   YG+ PQ+EHY C++DLL R G+++EA   I
Sbjct: 301 AVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLI 360

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +         +  +WG+LLSACR++  +E       +L+++  ++   + +  NIY EAG
Sbjct: 361 KSM---PWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 417

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              +  K R  +  TG +K  G S +E+N    EF  GD +H  + +I  ++
Sbjct: 418 QWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMV 469


>gi|293336578|ref|NP_001168380.1| uncharacterized protein LOC100382149 [Zea mays]
 gi|223947871|gb|ACN28019.1| unknown [Zea mays]
 gi|413955892|gb|AFW88541.1| hypothetical protein ZEAMMB73_254585 [Zea mays]
          Length = 651

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 147/399 (36%), Positives = 218/399 (54%), Gaps = 7/399 (1%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           L+VF   DM + G+  +      ++ AC   G ++N G   H  VV+ G G    V + L
Sbjct: 254 LAVFS--DMREEGWPVDEAVMVSVVAACAKSGVIQN-GEVCHGLVVRAGLGSRVNVQNVL 310

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           +  YS    +  AR LFD     D  +W +M+ GY K G  E+A+ LF+ MP+++ VSWS
Sbjct: 311 IHMYSSCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVMPDKDNVSWS 370

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
           A++A     +   E L++F  M+   +KP++  LVSV++AC++L A+ QG  VH Y ++Y
Sbjct: 371 AMIAGCVHNNQSSEALNVFDSMRAHEIKPDDVTLVSVISACSNLSALEQGKLVHEYIRKY 430

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
                ++L T+++DMY KCG + +AL VF+ +  K    WNA+I G+AMNG   +SL++F
Sbjct: 431 QYNITIVLGTSLIDMYMKCGCMEAALEVFDMLEEKGTPCWNAVIVGLAMNGLVTRSLDMF 490

Query: 253 DRMVKSGTQ-PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
             M  +GT  P E TF  VL+ C H  +V +G   F+ M   Y + P + HY C+VDLL 
Sbjct: 491 SEMEATGTAVPNEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIVPNIRHYGCMVDLLG 550

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           RAG V EAE  I+         D   WGALL AC  +G  EVG RV +KL ++       
Sbjct: 551 RAGYVREAEDMIQSMP---MSPDVPAWGALLGACWKHGDSEVGERVGKKLVKLDPDHDGF 607

Query: 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
             +  NIY   G       +R  + +  + K  GCS++E
Sbjct: 608 QTMLSNIYASEGMWQCVKDLRGSMKQQHVAKVAGCSMVE 646



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 156/323 (48%), Gaps = 39/323 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +++  ++  FP L   C+     M   P+ YT P L  AC   G +   G+ VH+H VK 
Sbjct: 80  LLKAALRQGFPHL---CFPLYASMPAAPDTYTHPLLAAACAARGDVRE-GLQVHSHSVKH 135

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF ++ ++ ++L+  YS    + +AR +FD  P  D V+W T++  Y + GD E A ++F
Sbjct: 136 GFSDNLYLRNALMHMYSACGCVASARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVKVF 195

Query: 121 EKMPER-------------------------------NAVSWSAIMAAYSRISDFKEVLS 149
            +MPER                               +A +W+A+++ + R   F E L+
Sbjct: 196 TRMPERSAAAVSAMVALFARRGMVEEARGVFDGAEHRDAFTWTAMVSCFERNDLFMEALA 255

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F  M+E G   +E+ +VSV+ ACA  G I  G   H    R  L   V +   ++ MYS
Sbjct: 256 VFSDMREEGWPVDEAVMVSVVAACAKSGVIQNGEVCHGLVVRAGLGSRVNVQNVLIHMYS 315

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            C  V +A  +F+   + D  +WN+MISG   NG  + +  LFD M          ++ A
Sbjct: 316 SCQDVVAARRLFDNGESLDHFSWNSMISGYLKNGRVEDAKALFDVM----PDKDNVSWSA 371

Query: 270 VLTTCTHAKMVRDGLNLFENMSA 292
           ++  C H     + LN+F++M A
Sbjct: 372 MIAGCVHNNQSSEALNVFDSMRA 394


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 145/434 (33%), Positives = 242/434 (55%), Gaps = 9/434 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y +AN  + +V C+  ML  G  P+  T   ++ AC  L  LE  G  +H  V + 
Sbjct: 210 LIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLE-LGRSLHLLVEEK 268

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFD---KSPDRDVVTWTTMVDGYGKMGDFENAR 117
           G      +V +L++ Y+     G A+ +FD   + P     +W  ++DGY K G  + AR
Sbjct: 269 GMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ--SWNAIIDGYCKHGHVDVAR 326

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF++M  R+ ++++++M  Y      +E L LF  M+   ++ +   +V++LTACA LG
Sbjct: 327 SLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLG 386

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ QG  +H+  ++  +E ++ L TA++DMY KCG V  A  VF+ +  +D   W AMI+
Sbjct: 387 ALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIA 446

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+A NG  K +LE F +M   G QP   +++AVLT C+H+ ++ +G   F+ M  +Y + 
Sbjct: 447 GLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIH 506

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           PQ+EHY C++DLL R+G+++EA   ++         +A +W ++LSACR++  I++    
Sbjct: 507 PQIEHYGCMIDLLGRSGLLDEAMDLVKTMP---IQPNAVIWASILSACRVHKHIDLAQCA 563

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
              L ++   +   +V  YNIY ++     A+K+R L+ E  +KK  G S I V G V +
Sbjct: 564 AEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHK 623

Query: 418 FLAGDNRHAQAGEI 431
           F+  D  H +  EI
Sbjct: 624 FVVSDKSHPRILEI 637



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 175/404 (43%), Gaps = 49/404 (12%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM--FVHAHVVKFGF-GEDPF 67
           P      +  M   G  P+ +TF  L K         +  +   +HA  ++       PF
Sbjct: 84  PHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPF 143

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           V +SL+  Y  +     AR  FD+   +D V WT ++ G  KMG   + + L  + P R+
Sbjct: 144 VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRD 203

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
            +SW++++AAYSR +  +E +  F+ M   G+ P+E  +++VL+ACA L  +  G  +H 
Sbjct: 204 VISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHL 263

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAK 246
             +   +  +  L  A++DMY+KCG    A  VF+ +       +WNA+I G   +G   
Sbjct: 264 LVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVD 323

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM---------------- 290
            +  LFD M          TF +++T   H+  +R+ L LF +M                
Sbjct: 324 VARSLFDEMEVRDI----ITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLL 379

Query: 291 ---SAVYGVEPQLEHYACV---------------VDLLARAGMVEEAEKFIEEKMGGLGG 332
              +++  ++     +AC+               +D+  + G V+EA    +     +G 
Sbjct: 380 TACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQR----MGK 435

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            D + W A+++     G   +G        +M    F  + +SY
Sbjct: 436 RDVHTWTAMIAGLAFNG---MGKAALEHFYQMRCDGFQPNSVSY 476



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 119/298 (39%), Gaps = 43/298 (14%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  LF++MP    +  +A+ A     SD      LFR+M+  G++P +      L  C+ 
Sbjct: 56  ALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRAGVRP-DGFTFHFLFKCSS 114

Query: 176 LGAITQGLW----VHSYAKRYHLEKNV-ILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
             +    L     +H+   R  L      ++ +++ MY + G    A   F+ I  KDA 
Sbjct: 115 SSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAV 174

Query: 231 AWNAMISGVAMNG-------------------------------DAKKSLELFDRMVKSG 259
           AW  +ISG+A  G                                A++++  F  M+  G
Sbjct: 175 AWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHG 234

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             P E T +AVL+ C   K +  G +L   +    G+         ++D+ A+ G    A
Sbjct: 235 IAPDEVTVIAVLSACAKLKDLELGRSL-HLLVEEKGMPTSENLVVALIDMYAKCGDFGHA 293

Query: 320 EKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           ++  +     LG G     W A++     +G ++V   ++ ++    I  F++ +  Y
Sbjct: 294 QQVFD----ALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGY 347


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 145/421 (34%), Positives = 229/421 (54%), Gaps = 37/421 (8%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           LS+F +  ML  G EP+ +T+  ++KAC     L N GM +H  ++K   G D FV  +L
Sbjct: 399 LSLFVW--MLQSGMEPDEFTYGSVLKACAGWQAL-NCGMEIHNRIIKSRMGLDSFVGIAL 455

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           ++ YS                               K G  E A +L +++ E+  VSW+
Sbjct: 456 IDMYS-------------------------------KCGMMEKAEKLHDRLAEQTVVSWN 484

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
           AI++ +S     +E    F +M E+G+ P+     ++L  CA+L  +  G  +H+   + 
Sbjct: 485 AIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKK 544

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            L+ +  +++ +VDMYSKCG++     +FE   N+D   WNAM+ G A +G  +++L++F
Sbjct: 545 ELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIF 604

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
           + M     +P   TF+AVL  C H  +V  GL+ F +M + YG++PQLEHY+CVVD++ R
Sbjct: 605 EYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGR 664

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
           +G V +A + IE   G     DA +W  LLS C+I+G +EV  +    + ++   D + +
Sbjct: 665 SGQVSKALELIE---GMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAY 721

Query: 373 VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           VL  NIY  AG   E  K+RK++   G+KK+PGCS IE+   V  FL GD  H ++ EIY
Sbjct: 722 VLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIY 781

Query: 433 R 433
            
Sbjct: 782 E 782



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 180/369 (48%), Gaps = 35/369 (9%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFG--MFVHAHVVKFGFGEDPFVVSSLLEFYS---- 77
           MG   +  TF  ++K+C     LE+ G  + +H   VK GF  D    S+LL+ Y+    
Sbjct: 152 MGTVFDRTTFAVVLKSC---SSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCV 208

Query: 78  ----------LVHKMGTARA--------LFDKSPDRDVVTWTTMVDGYGKMGDFEN-ARE 118
                     L  +M  A                  DVV  T  +D Y K  +  + + +
Sbjct: 209 QNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQ 268

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF  +P  N  S++AI+  Y+R     E L +FR +Q+ G+  +E  L     ACA +  
Sbjct: 269 LFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKG 328

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             +GL VH  + +   + N+ +A A++DMY KCG +  A  VFE + ++DA +WNA+I+ 
Sbjct: 329 DLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAA 388

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVE 297
              NG+ +K+L LF  M++SG +P E T+ +VL  C   + +  G+ +    + +  G++
Sbjct: 389 HEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLD 448

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             +     ++D+ ++ GM+E+AEK  +     L       W A++S   +  + E   + 
Sbjct: 449 SFVG--IALIDMYSKCGMMEKAEKLHDR----LAEQTVVSWNAIISGFSLQKQSEEAQKT 502

Query: 358 WRKLAEMGI 366
           + K+ EMG+
Sbjct: 503 FSKMLEMGV 511



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 130/232 (56%), Gaps = 5/232 (2%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++     ++D YGK G    A  +FE+M  R+AVSW+AI+AA+ +  + ++ LSLF  M 
Sbjct: 347 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 406

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + GM+P+E    SVL ACA   A+  G+ +H+   +  +  +  +  A++DMYSKCG + 
Sbjct: 407 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMME 466

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  + + ++ +   +WNA+ISG ++   ++++ + F +M++ G  P   T+  +L TC 
Sbjct: 467 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 526

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEE 325
           +   V  G  +    + +   E Q + Y  + +VD+ ++ G +++ +   E+
Sbjct: 527 NLVTVELGKQIH---AQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEK 575



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 138/333 (41%), Gaps = 43/333 (12%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G   HA ++   F    FV + L++ Y     +G A  +FD  P RD V+W  M+ GY  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 110 MGDFENARELFEKMPER-------------------NAVSWSAIMAAYSRISDFKEVLSL 150
            GD   A++LF+ MP                     +  +++ ++ + S + D    + +
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQI 180

Query: 151 FRQMQEVGMKPN---ESGLVSVLTACAHLGAITQG---------------LWVHSYAKRY 192
                ++G   +    S L+ +   C       +G               L +H +A + 
Sbjct: 181 HGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKT 240

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALS-VFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
               +V++ TA +DMY KC ++    + +F  + N +  ++NA+I G A +    ++L +
Sbjct: 241 DFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGM 300

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
           F  + KSG    E +       C   K   +GL +   +S     +  +     ++D+  
Sbjct: 301 FRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQV-HGLSMKSLCQSNICVANAILDMYG 359

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
           + G + EA    EE +      DA  W A+++A
Sbjct: 360 KCGALVEACLVFEEMV----SRDAVSWNAIIAA 388



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +   C+   A+  G   H+       +  V +   ++ MY KC  +  A  VF+G+  +D
Sbjct: 48  IFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRD 107

Query: 229 AGAWNAMISGVAMNGDAKKSLELFD---------------RMVKSGTQPTETTFVAVLTT 273
             +WNAM+ G A  GD   + +LFD               RM + GT    TTF  VL +
Sbjct: 108 TVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKS 167

Query: 274 CT 275
           C+
Sbjct: 168 CS 169



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 10/167 (5%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           M+ GY Q    +  L +F Y+ + ++  +PN+ TF  +++AC  +G +E    + H+ + 
Sbjct: 587 MVCGYAQHGLGEEALKIFEYMQLENV--KPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 644

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTWTTMVDGYGKMGDFENAR 117
            +G        S +++      ++  A  L +  P + D V W T++      G+ E A 
Sbjct: 645 NYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAE 704

Query: 118 E----LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           +    + +  PE +A ++  +   Y+    + EV  L + M+  G+K
Sbjct: 705 KAAYSILQLEPEDSA-AYVLLSNIYANAGMWNEVTKLRKMMRFNGLK 750


>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
 gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
          Length = 607

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 243/443 (54%), Gaps = 35/443 (7%)

Query: 1   MIRGYMQANFP--KLSVFCYLD-MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
           +IR +  +  P  +L    +   ML     PN +TFP L+KAC  L      G+  HA  
Sbjct: 99  LIRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAA 158

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +KFGF  D +V ++L+  YS                            G   +GD   AR
Sbjct: 159 LKFGFATDQYVSNTLIHMYSCF--------------------------GGEFLGD---AR 189

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            +F++M + + V+WSA++  Y R     + + LFR+MQ  G++P+E  ++ VL A A LG
Sbjct: 190 NVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIGVLAAAADLG 249

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+    WV  + +R  + K+V L  A++D  +KCG V  A++VF+G+  +   +W ++I 
Sbjct: 250 ALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERTVVSWTSVID 309

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
            +AM G  K+++ +F+ M  +G +P +  F+ VLT C+HA MV +G   F++M   YG++
Sbjct: 310 ALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGID 369

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY C+VD+  RAGMVE A +FI          +  +W  L++ACR +G++E+G  +
Sbjct: 370 PKIEHYGCMVDMFGRAGMVERAMEFIHTMP---MKPNPIIWRTLVAACRAHGRLELGESI 426

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            R L        + +V+  N+Y       E +++R+ +S+ G+KK PGCS++E++G V E
Sbjct: 427 TRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHE 486

Query: 418 FLAGDNRHAQAGEIYRVIHSFLK 440
           F+AGD  H Q  EIY ++    +
Sbjct: 487 FIAGDESHPQWKEIYMMVEEMAR 509


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 139/426 (32%), Positives = 228/426 (53%), Gaps = 34/426 (7%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           +V  Y  ML  G   +NYTF  +IKAC  L  L   G  +H+HV+  G+G D +V ++L+
Sbjct: 173 TVLFYRRMLFSGAPQSNYTFTSVIKACADLSALR-LGKEIHSHVMVCGYGSDMYVQAALI 231

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
             Y+    M  A+ +FD  P R ++ W +++ GY + G           +P+        
Sbjct: 232 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNG-----------LPQ-------- 272

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
                       E + LF  M E G +P+ + +VS+L++C+ LGA+  G W+H YA    
Sbjct: 273 ------------ESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNG 320

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            + NV+L T++++MY++CG+V  A  VF+ +  ++   W AMISG  M+G  ++++ELF 
Sbjct: 321 FDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFT 380

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M   G +P   TFVAVL+ C H+ ++ DG  +F +M   YG+ P +EH  C+VD+  RA
Sbjct: 381 EMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRA 440

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G++ +A +FI++ +    G    VW ++L ACR++   ++G +V   +  +   +   +V
Sbjct: 441 GLLNDAYQFIKKFIPKEPG--PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYV 498

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           +  NIY  AG       VR +++   +KK+ G S IE+N     F  GD  H Q   IYR
Sbjct: 499 MLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYR 558

Query: 434 VIHSFL 439
            +   +
Sbjct: 559 YLDELM 564



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 35/245 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q   P+ S+  +  M++ GF+P++ T   L+ +C  LG L+ FG ++H +    
Sbjct: 261 LISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD-FGCWLHDYADGN 319

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  + +SL+  Y+    +  AR +FD   +R+VVTWT M+ GYG  G    A ELF
Sbjct: 320 GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF 379

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                           +M+  G +PN    V+VL+ACAH G I 
Sbjct: 380 T-------------------------------EMRAYGPRPNNITFVAVLSACAHSGLID 408

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG--AWNAMIS 237
            G  V S  K  Y L   V     +VDM+ + G ++ A    +    K+ G   W +M+ 
Sbjct: 409 DGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 468

Query: 238 GVAMN 242
              M+
Sbjct: 469 ACRMH 473



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 147/332 (44%), Gaps = 40/332 (12%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    AR LF  +P  ++  + +++   S+     + +  +R+M   G   +     SV+
Sbjct: 137 GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVI 196

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA L A+  G  +HS+        ++ +  A++ +Y+K   +  A  VF+ +  +   
Sbjct: 197 KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTII 256

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AWN++ISG   NG  ++S+ LF  M++SG QP   T V++L++C+    +  G  L +  
Sbjct: 257 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYA 316

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE------------------------- 325
               G +  +     ++++  R G V +A +  +                          
Sbjct: 317 DG-NGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQA 375

Query: 326 -----KMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAE-MGITDFSTH-VLSYN 377
                +M   G    N+ + A+LSAC   G I+ G RV+  + E  G+     H V   +
Sbjct: 376 MELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVD 435

Query: 378 IYKEAGWDMEANK-VRKLISETGMKKKPGCSV 408
           ++  AG   +A + ++K I      K+PG +V
Sbjct: 436 MFGRAGLLNDAYQFIKKFI-----PKEPGPAV 462



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH++     L ++  L T ++ +    G +  A  +F  + N D+  +++++   +  G 
Sbjct: 110 VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 169

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQLEHY 303
           +  ++  + RM+ SG   +  TF +V+  C     +R G  +  + M   YG +  ++  
Sbjct: 170 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ-- 227

Query: 304 ACVVDLLARAGMVEEAEKFIE 324
           A ++ L A+A  ++ A+K  +
Sbjct: 228 AALIALYAKASDMKVAKKVFD 248


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 235/435 (54%), Gaps = 37/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++Q  FP+ ++  YL M   G EP+ +T   L+ AC  L  L + G  +H  +++ 
Sbjct: 473 LIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSL-SCGKEIHGSMLRN 531

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F+  SL+  Y    K+  A+  FD   ++++V W TM++G+ +           
Sbjct: 532 GFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQ----------- 580

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                 N   + A              L +F QM    + P+E  ++  L AC+ + A+ 
Sbjct: 581 ------NEFPFDA--------------LDMFHQMLSSKIWPDEISIIGALGACSQVSALR 620

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H +A + HL ++  +  +++DMY+KCG +  + ++F+ +  K    WN +I+G  
Sbjct: 621 LGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYG 680

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +K++ELF  M  +G +P   TF+A+LT C HA +V +GL     M +++G++P+L
Sbjct: 681 IHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKL 740

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYACVVD+L RAG + EA + + E        D+ +W +LLS+CR Y  +++G +V  K
Sbjct: 741 EHYACVVDMLGRAGRLNEALELVNELP---DKPDSRIWSSLLSSCRNYRDLDIGEKVANK 797

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+G      +VL  N Y   G WD E  K+R+ + E G++K  GCS IE+ G V  FL
Sbjct: 798 LLELGPDKAENYVLISNFYARLGKWD-EVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFL 856

Query: 420 AGDNRHAQAGEIYRV 434
            GD    Q+ +I + 
Sbjct: 857 VGDESLLQSMKIQQT 871



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 144/278 (51%), Gaps = 37/278 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY++ +  + +VF +++M+ +  F P+N+T P +IKACV +  +   G  VH   +K
Sbjct: 166 LLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVR-LGEAVHGFALK 224

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                D FV ++L+  Y                               GK G  E+A ++
Sbjct: 225 TKVLSDVFVGNALIAMY-------------------------------GKFGFVESAVKV 253

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ--EVGMKPNESGLVSVLTACAHLG 177
           F+KMP+RN VSW+++M A      F+E   LF+ +   + G+ P+ + +V+V+  CA  G
Sbjct: 254 FDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQG 313

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G+  H  A +  L   + + ++++DMYSKCG++  A  +F+  + K+  +WN+MI 
Sbjct: 314 EVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIG 372

Query: 238 GVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTC 274
           G + + D + + EL  +M ++   +  E T + VL  C
Sbjct: 373 GYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 145/311 (46%), Gaps = 43/311 (13%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D G  P+  T   +I  C   G +   GM  H   +K G   +  V SSLL+ YS     
Sbjct: 292 DEGLMPDVATMVTVIPLCARQGEVR-LGMVFHGLALKLGLCGELKVNSSLLDMYS----- 345

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
                                     K G    AR LF+   E+N +SW++++  YS+  
Sbjct: 346 --------------------------KCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDR 378

Query: 143 DFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLEKNVIL 200
           DF+    L R+MQ E  +K NE  L++VL  C       +   +H YA R+  ++ + ++
Sbjct: 379 DFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELV 438

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           A A V  Y+KCG +H A  VF G+ +K   +WNA+I G   NG  +K+L+L+  M  SG 
Sbjct: 439 ANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGL 498

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV--VDLLARAGMVEE 318
           +P   T  ++L+ C   K +  G  +  +M    G E  L+ + C+  V L  + G +  
Sbjct: 499 EPDLFTIASLLSACARLKSLSCGKEIHGSM-LRNGFE--LDEFICISLVSLYVQCGKILL 555

Query: 319 AEKF---IEEK 326
           A+ F   +EEK
Sbjct: 556 AKLFFDNMEEK 566



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 9/234 (3%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D +     V GY K G    A  +F  M  +   SW+A++  + +    ++ L L+  M+
Sbjct: 435 DELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMR 494

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G++P+   + S+L+ACA L +++ G  +H    R   E +  +  ++V +Y +CG + 
Sbjct: 495 GSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKIL 554

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A   F+ +  K+   WN MI+G + N     +L++F +M+ S   P E + +  L  C+
Sbjct: 555 LAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACS 614

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEE 325
               +R G  L       + V+  L  ++ V    +D+ A+ G +E+++   + 
Sbjct: 615 QVSALRLGKELH-----CFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDR 663



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 4/228 (1%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DVV  T +V  Y       ++  +F     +N   W+A+++ Y R S F++ + +F +M 
Sbjct: 128 DVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 156 EVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
            +    P+   L  V+ AC  +  +  G  VH +A +  +  +V +  A++ MY K G V
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFV 247

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK--SGTQPTETTFVAVLT 272
            SA+ VF+ +  ++  +WN+++     NG  ++S  LF  ++    G  P   T V V+ 
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            C     VR G+ +F  ++   G+  +L+  + ++D+ ++ G + EA 
Sbjct: 308 LCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEAR 354



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 19/192 (9%)

Query: 169 VLTACAHLGAITQGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           +L  C     I  G  +H++ +   H + +V+L T +V MYS C   + +  VF     K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           +   WNA++SG   N   + ++ +F  M+  +   P   T   V+  C     VR G   
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLG--- 215

Query: 287 FENMSAVYGVEPQLEHYACV------VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
                AV+G   + +  + V      + +  + G VE A K  ++    +   +   W +
Sbjct: 216 ----EAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDK----MPQRNLVSWNS 267

Query: 341 LLSACRIYGKIE 352
           ++ AC   G  E
Sbjct: 268 VMYACLENGVFE 279


>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
          Length = 510

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 148/402 (36%), Positives = 234/402 (58%), Gaps = 9/402 (2%)

Query: 49  FGMFVHAHVVKFGF--GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDG 106
           F +  H+ ++K G     DPF+ S+L+ FY+    +  AR +FD+   RD   +  ++  
Sbjct: 103 FFLCSHSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSA 162

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESG 165
           Y K G  ++A +LFE+MP+RN VSW+A+++ Y++    +E +  F +M E  G++PNE  
Sbjct: 163 YAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELT 222

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI- 224
           + SVL ACA +GA+  G  V  YA+   L +NV +A A+++MYSKCG +  A  VF+GI 
Sbjct: 223 VSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIG 282

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             +D  +WN+MI   A++G  +++L LF ++  +G +P   TFV V+  CTH  +V +G 
Sbjct: 283 RQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGK 342

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             F++M A + ++P++EHY C+VDLL RAG++ E+   I          DA +WGALL A
Sbjct: 343 LFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMP---VEPDAVIWGALLGA 399

Query: 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKK 403
           C  +G +E+      KL  +   + +  V+  NIY  +G WD  A +V KL+ E   KK 
Sbjct: 400 CSFHGNVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVA-QVWKLLKEKDHKKS 458

Query: 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
            G S IE++G + +FL  D  H +  E+Y  ++S      LV
Sbjct: 459 AGYSFIELDGTMHKFLVEDKSHPRFEEVYNTLNSVTMTMKLV 500



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 128/287 (44%), Gaps = 36/287 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M+ GY Q    + +V  +L+M +  G +PN  T   ++ AC  +G +E  G  V  +   
Sbjct: 190 MVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAME-LGRKVEEYARG 248

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   + +V ++LLE YS   K G+ R             W     G G+  D       
Sbjct: 249 KGLLRNVYVANALLEMYS---KCGSIRQ-----------AWQVF-QGIGRQQDL------ 287

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                     SW++++ A++    ++E L+LF +++  G+KP+    V V+ AC H G +
Sbjct: 288 ---------CSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLV 338

Query: 180 TQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G L+  S    + L+  +     +VD+  + G +  + S+   +    DA  W A++ 
Sbjct: 339 NEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLG 398

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             + +G+ + +    D+++    +P  T  + +L+    +    DG+
Sbjct: 399 ACSFHGNVELAELAMDKLIH--LEPQNTANLVILSNIYASSGKWDGV 443


>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
          Length = 510

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 148/402 (36%), Positives = 234/402 (58%), Gaps = 9/402 (2%)

Query: 49  FGMFVHAHVVKFGF--GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDG 106
           F +  H+ ++K G     DPF+ S+L+ FY+    +  AR +FD+   RD   +  ++  
Sbjct: 103 FFLCSHSLLIKLGHFASSDPFLSSALVSFYAKSKLLVEARKVFDELTCRDTAVYNALLSA 162

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESG 165
           Y K G  ++A +LFE+MP+RN VSW+A+++ Y++    +E +  F +M E  G++PNE  
Sbjct: 163 YAKGGLVDSAEKLFEEMPDRNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELT 222

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI- 224
           + SVL ACA +GA+  G  V  YA+   L +NV +A A+++MYSKCG +  A  VF+GI 
Sbjct: 223 VSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAWQVFQGIG 282

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             +D  +WN+MI   A++G  +++L LF ++  +G +P   TFV V+  CTH  +V +G 
Sbjct: 283 RQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLVNEGK 342

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             F++M A + ++P++EHY C+VDLL RAG++ E+   I          DA +WGALL A
Sbjct: 343 LFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMP---VEPDAVIWGALLGA 399

Query: 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKK 403
           C  +G +E+      KL  +   + +  V+  NIY  +G WD  A +V KL+ E   KK 
Sbjct: 400 CSFHGNVELAELAMDKLIHLEPQNTANLVILSNIYASSGKWDGVA-QVWKLLKEKDHKKS 458

Query: 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
            G S IE++G + +FL  D  H +  E+Y  ++S      LV
Sbjct: 459 AGYSFIELDGTMHKFLVEDKSHPRFEEVYNTLNSVTMTMKLV 500



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 128/287 (44%), Gaps = 36/287 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M+ GY Q    + +V  +L+M +  G +PN  T   ++ AC  +G +E  G  V  +   
Sbjct: 190 MVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAME-LGRKVEEYARG 248

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   + +V ++LLE YS   K G+ R             W     G G+  D       
Sbjct: 249 KGLLRNVYVANALLEMYS---KCGSIRQ-----------AWQVF-QGIGRQQDL------ 287

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                     SW++++ A++    ++E L+LF +++  G+KP+    V V+ AC H G +
Sbjct: 288 ---------CSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHGGLV 338

Query: 180 TQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMIS 237
            +G L+  S    + L+  +     +VD+  + G +  + S+   +    DA  W A++ 
Sbjct: 339 NEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGALLG 398

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             + +G+ + +    D+++    +P  T  + +L+    +    DG+
Sbjct: 399 ACSFHGNVELAELAMDKLIH--LEPQNTANLVILSNIYASSGKWDGV 443


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 139/426 (32%), Positives = 228/426 (53%), Gaps = 34/426 (7%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           +V  Y  ML  G   +NYTF  +IKAC  L  L   G  +H+HV+  G+G D +V ++L+
Sbjct: 109 TVLFYRRMLFSGAPQSNYTFTSVIKACADLSALR-LGKEIHSHVMVCGYGSDMYVQAALI 167

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
             Y+    M  A+ +FD  P R ++ W +++ GY + G           +P+        
Sbjct: 168 ALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNG-----------LPQ-------- 208

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
                       E + LF  M E G +P+ + +VS+L++C+ LGA+  G W+H YA    
Sbjct: 209 ------------ESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNG 256

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            + NV+L T++++MY++CG+V  A  VF+ +  ++   W AMISG  M+G  ++++ELF 
Sbjct: 257 FDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFT 316

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M   G +P   TFVAVL+ C H+ ++ DG  +F +M   YG+ P +EH  C+VD+  RA
Sbjct: 317 EMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRA 376

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G++ +A +FI++ +    G    VW ++L ACR++   ++G +V   +  +   +   +V
Sbjct: 377 GLLNDAYQFIKKFIPKEPG--PAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYV 434

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
           +  NIY  AG       VR +++   +KK+ G S IE+N     F  GD  H Q   IYR
Sbjct: 435 MLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYR 494

Query: 434 VIHSFL 439
            +   +
Sbjct: 495 YLDELM 500



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 113/245 (46%), Gaps = 35/245 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q   P+ S+  +  M++ GF+P++ T   L+ +C  LG L+ FG ++H +    
Sbjct: 197 LISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALD-FGCWLHDYADGN 255

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  + +SL+  Y+    +  AR +FD   +R+VVTWT M+ GYG  G    A ELF
Sbjct: 256 GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF 315

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                           +M+  G +PN    V+VL+ACAH G I 
Sbjct: 316 T-------------------------------EMRAYGPRPNNITFVAVLSACAHSGLID 344

Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG--AWNAMIS 237
            G  V S  K  Y L   V     +VDM+ + G ++ A    +    K+ G   W +M+ 
Sbjct: 345 DGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 404

Query: 238 GVAMN 242
              M+
Sbjct: 405 ACRMH 409



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 152/349 (43%), Gaps = 54/349 (15%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++      G    AR LF  +P  ++  + +++   S+     + +  +R+M   G  
Sbjct: 63  TKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAP 122

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
            +     SV+ ACA L A+  G  +HS+        ++ +  A++ +Y+K   +  A  V
Sbjct: 123 QSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKV 182

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F+ +  +   AWN++ISG   NG  ++S+ LF  M++SG QP   T V++L++C+    +
Sbjct: 183 FDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGAL 242

Query: 281 RDGLNLFE-------NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-------- 325
             G  L +       +++ V G          ++++  R G V +A +  +         
Sbjct: 243 DFGCWLHDYADGNGFDLNVVLGTS--------LINMYTRCGNVSKAREVFDSMKERNVVT 294

Query: 326 ----------------------KMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLA 362
                                 +M   G    N+ + A+LSAC   G I+ G RV+  + 
Sbjct: 295 WTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 354

Query: 363 E-MGITDFSTH-VLSYNIYKEAGWDMEANK-VRKLISETGMKKKPGCSV 408
           E  G+     H V   +++  AG   +A + ++K I      K+PG +V
Sbjct: 355 EAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFI-----PKEPGPAV 398



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 68/141 (48%), Gaps = 3/141 (2%)

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH++     L ++  L T ++ +    G +  A  +F  + N D+  +++++   +  G 
Sbjct: 46  VHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGF 105

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQLEHY 303
           +  ++  + RM+ SG   +  TF +V+  C     +R G  +  + M   YG +  ++  
Sbjct: 106 SIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQ-- 163

Query: 304 ACVVDLLARAGMVEEAEKFIE 324
           A ++ L A+A  ++ A+K  +
Sbjct: 164 AALIALYAKASDMKVAKKVFD 184


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  263 bits (673), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 147/436 (33%), Positives = 250/436 (57%), Gaps = 10/436 (2%)

Query: 1   MIRGY-MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRGY ++  F + ++  Y  M      P ++TF  L+KAC  +  L N G   HA   +
Sbjct: 120 VIRGYAIEGKFDE-AIAMYGCMRKEEITPVSFTFSALLKACGTMKDL-NLGRQFHAQTFR 177

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                  +V +++++ Y     +  AR +FD+ P+RDV++WT ++  Y ++G+ E A EL
Sbjct: 178 LRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAEL 237

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE +P ++ V+W+A++  +++ +  +E L  F +M++ G++ +E  +   ++ACA LGA 
Sbjct: 238 FESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS 297

Query: 180 TQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
                    A++  Y    +V++ +A++DMYSKCG+V  A++VF  ++NK+   +++MI 
Sbjct: 298 KYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMIL 357

Query: 238 GVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           G+A +G A+++L LF  MV ++  +P   TFV  L  C+H+ +V  G  +F++M   +GV
Sbjct: 358 GLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGV 417

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P  +HY C+VDLL R G ++EA + I+       GG   VWGALL ACRI+   E+   
Sbjct: 418 QPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGG---VWGALLGACRIHNNPEIAEI 474

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS-VIEVNGVV 415
               L E+       ++L  N+Y  AG      +VRKLI E G+KK P  S V++ NG +
Sbjct: 475 AAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQM 534

Query: 416 EEFLAGDNRHAQAGEI 431
            +F  G+  H  + +I
Sbjct: 535 HKFFPGNLNHPMSNKI 550



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 21/279 (7%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT-----ARALFDKSPDRDVVTWTTMVDGY 107
           +H HV++ G  +  ++++ L+   +   K+G      AR + +    R+   WT ++ GY
Sbjct: 68  IHGHVLRKGLDQSCYILTKLIRTLT---KLGVPMDPYARRVIEPVQFRNPFLWTAVIRGY 124

Query: 108 GKMGDFENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
              G F+ A  ++  M +      + ++SA++ A   + D    L+L RQ      +   
Sbjct: 125 AIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKD----LNLGRQFHAQTFRLRG 180

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
              V V      +    + +           E++VI  T ++  Y++ G++  A  +FE 
Sbjct: 181 FCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFES 240

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH---AKMV 280
           +  KD  AW AM++G A N   +++LE FDRM KSG +  E T    ++ C     +K  
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
              + + +   + Y     +   + ++D+ ++ G VEEA
Sbjct: 301 DRAVQIAQK--SGYSPSDHVVIGSALIDMYSKCGNVEEA 337


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 246/432 (56%), Gaps = 5/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y +A+  K +V C+ +ML  G  P++ T   ++ AC  L  LE  G  +H+ V + 
Sbjct: 211 LIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLE-LGCSLHSLVKEK 269

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G      +V +L++ Y+     G AR +FD     R   +W  ++DGY K G  + AR L
Sbjct: 270 GMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSL 329

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++M  R+ +++++++  Y      +E L LF  M+   ++ +   +VS+L+ACA LGA+
Sbjct: 330 FDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGAL 389

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG  +H+  +   +E ++ + TA++DMY KCG V+ A  VF+ +  +D  AW AMI+G+
Sbjct: 390 PQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGL 449

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A NG  K  LE F +M   G QP   +++AVLT C+H+ ++ +G   F+ M  +Y + PQ
Sbjct: 450 AFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQ 509

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C++DLL R+G+++EA   ++         ++ +W ++LSACR++ +I++      
Sbjct: 510 IEHYGCMIDLLGRSGLLDEAMDLVKTMP---MQPNSVIWASILSACRVHKRIDLAQCAAE 566

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L ++   + + +V  YNI  ++    +A+K+R L+ E  +KK  G S + V G V +F+
Sbjct: 567 HLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFV 626

Query: 420 AGDNRHAQAGEI 431
             D  H +  EI
Sbjct: 627 VSDKSHPRILEI 638



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 167/369 (45%), Gaps = 44/369 (11%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVV 69
           P +    +  M      P+ +TF  L K      P       +HA  ++       PFV 
Sbjct: 87  PDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVA 146

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SL+  Y+ +   G  R  FD+ P +D V+WT ++ G  KMG   +AR L  + P R+ +
Sbjct: 147 NSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVI 206

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW++++AAYSR    KE +  F+ M   G+ P++  ++ VL+AC+ L  +  G  +HS  
Sbjct: 207 SWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLV 266

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKS 248
           K   +  +  L  A++DMY+KCG    A  VF+ +   +   +WNA+I G   +G    +
Sbjct: 267 KEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVA 326

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM------------------ 290
             LFD+M          TF +++T   H+  +R+ L LF NM                  
Sbjct: 327 RSLFDQMEVRDI----ITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSA 382

Query: 291 SAVYGVEPQ-LEHYACV---------------VDLLARAGMVEEAEKFIEEKMGGLGGGD 334
            A  G  PQ    +AC+               +D+  + G V EA    +     +G  D
Sbjct: 383 CASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQR----MGKRD 438

Query: 335 ANVWGALLS 343
            + W A+++
Sbjct: 439 VHAWTAMIA 447



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 177/342 (51%), Gaps = 14/342 (4%)

Query: 73   LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
            ++ + +VHK+G     F  S    V   TT++D YGK   F+++  +F ++P       +
Sbjct: 1017 VQIHGIVHKLG-----FSCS---SVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN 1068

Query: 133  AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA--ITQGLWVHSYAK 190
            +++ +  R + F   L +   M   G+ P++    + + A +   +  +T    +HS   
Sbjct: 1069 SLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLV 1128

Query: 191  RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
            +   E ++ + ++++  Y+  G + S+  +FEG+ + +   + A+IS  A  GD  +++E
Sbjct: 1129 KLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAME 1188

Query: 251  LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
            LFD+MV SG +P   TF+  +  C  A M  +G  + E M A   ++P   H+AC+V+LL
Sbjct: 1189 LFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLL 1248

Query: 311  ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
            +R G V+EA + +E+            W +LL +C+ +G+  +G R    L ++G  D +
Sbjct: 1249 SRDGFVKEAMEMMEQSP---LRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPA 1305

Query: 371  THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
            T +   N + + G    A +++++ +   +KK  G S+IEV+
Sbjct: 1306 TTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1346



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 141/363 (38%), Gaps = 60/363 (16%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            ++RG       +  + C+LDM     E N  ++   +K C   G     G  +H  V+K 
Sbjct: 865  VLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKA 924

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G+      +S+                              ++VD Y  +GD  +  +  
Sbjct: 925  GWIPSNIFLSN------------------------------SLVDLYSAIGDSVDTVKAL 954

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
              +   + +SW++I++ Y+     KE +   +QM   G  P+    VS+L      G   
Sbjct: 955  NDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQ 1014

Query: 181  QGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +H    +      +V + T ++DMY KC     +L++F  I +      N++I+  
Sbjct: 1015 LGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSS 1074

Query: 240  AMNGDAKKSLELFDRMVKSGTQPTETTFVAV-----------LTTCT--HAKMVRDGLNL 286
                    +LE+   M+  G  P + TF A            LT+C   H+ +V+ G   
Sbjct: 1075 LRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLG--- 1131

Query: 287  FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
            FE   AV      +  YAC       AG +  +    E    GL   +   + A++SAC 
Sbjct: 1132 FEMDMAV--CSSLITAYAC-------AGQLSSSHLIFE----GLLDPNVICFTAIISACA 1178

Query: 347  IYG 349
             YG
Sbjct: 1179 RYG 1181



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/273 (20%), Positives = 111/273 (40%), Gaps = 38/273 (13%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            MI G+++      +   Y  M+  G     +TF  ++  C     L+     +H  V+  
Sbjct: 768  MITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ-----LHGRVLAL 822

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G   +PFV S+L+  Y  V           +SP   +                     LF
Sbjct: 823  GLCCNPFVGSALVNHYMHV-----------ESPHASL--------------------SLF 851

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA-I 179
             ++P +N    + ++     +   +E++  F  M+   ++ N       +  C   G  +
Sbjct: 852  RELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWL 911

Query: 180  TQGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
             QG  +H    K   +  N+ L+ ++VD+YS  G     +     I ++D  +WN+++S 
Sbjct: 912  EQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSM 971

Query: 239  VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
             A  G  K+++    +M+  G  P+  +FV++L
Sbjct: 972  YADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLL 1004



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 34/250 (13%)

Query: 21   MLDMGFEPNNYTFPPLIKACVI-LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
            M+  G  P++ TF   +KA  +   P       +H+ +VK GF  D  V SSL+  Y+  
Sbjct: 1090 MIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACA 1149

Query: 80   HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
             ++ ++  +F+   D +V+ +T ++    + GD   A ELF+                  
Sbjct: 1150 GQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFD------------------ 1191

Query: 140  RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG-LWVHSYAKRYHLEKNV 198
                         QM   G+KP+    +  +  C   G   +G L +        L+ + 
Sbjct: 1192 -------------QMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDE 1238

Query: 199  ILATAVVDMYSKCGHVHSALSVFEGISNKD-AGAWNAMISGVAMNGDAKKSLELFDRMVK 257
                 +V++ S+ G V  A+ + E    +    AW++++     +G+        + ++ 
Sbjct: 1239 RHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLID 1298

Query: 258  SGTQPTETTF 267
             G +   TT 
Sbjct: 1299 VGRKDPATTL 1308


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 244/433 (56%), Gaps = 7/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV-VK 59
           +I GY +A     +V C+  ML  G  P+  T   ++ AC  L  L NFG  +H  V  K
Sbjct: 208 LISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDL-NFGCSLHMLVGDK 266

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENARE 118
                D  VV+ L++ Y+     G AR +FD     R    W  M+DGY K+G  + AR 
Sbjct: 267 RMLMSDKLVVA-LIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARS 325

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF++M + + +++++++  Y      +E L LF +M+  G+  +   +V +LTA A LGA
Sbjct: 326 LFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGA 385

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG  +H+  ++  +E++V L TA++DMY KCG V  A+  F+ +S +D   W+AMI G
Sbjct: 386 LPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGG 445

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A NG  K +LE F  M   G      T++AVLT C+H+ ++ +G   F+ M  ++ + P
Sbjct: 446 LAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRP 505

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           Q+EHY C++DLL R+G+++EA   ++         +A +W ++LSACR++  +++     
Sbjct: 506 QIEHYGCMIDLLGRSGLLDEAMDLVQTMP---MQPNAVIWASILSACRVHKNVDLAQNAA 562

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
             L ++   + + +V  YNIY ++    +A+K+R+L+ + G+KK  G S I V G V +F
Sbjct: 563 HHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVHKF 622

Query: 419 LAGDNRHAQAGEI 431
           + GD  H Q  EI
Sbjct: 623 IVGDRSHPQIAEI 635



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 160/368 (43%), Gaps = 44/368 (11%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVV 69
           P   +  Y  M  +   P+ +TF  L K C   G     G  +HA   +       P + 
Sbjct: 84  PDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLPSAVPLIA 143

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           S ++  Y+ +   G AR  FD++  +DVV WTT++ G  KMG  ++AR L  + P RN V
Sbjct: 144 SPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLARAPVRNVV 203

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           +W+ +++ YSR     E +  F  M   G+ P+E  ++ +L+AC  L  +  G  +H   
Sbjct: 204 TWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLV 263

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKS 248
               +  +  L  A++DMY+KCG    A  VF+ +   +    WNAMI G    G    +
Sbjct: 264 GDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIA 323

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM------------------ 290
             LFD+M          TF +++T   H   +R+ L LF  M                  
Sbjct: 324 RSLFDQMEDHDV----ITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTA 379

Query: 291 SAVYGVEPQLEH-YACV---------------VDLLARAGMVEEAEKFIEEKMGGLGGGD 334
           SA  G  PQ    +AC+               +D+  + G VEEA    ++    +   D
Sbjct: 380 SASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQ----MSVRD 435

Query: 335 ANVWGALL 342
            + W A++
Sbjct: 436 VHTWSAMI 443



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 144/348 (41%), Gaps = 48/348 (13%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           P  V    E ++LV   G  R L   S    + + T+ +     +     A  LF++MP 
Sbjct: 9   PGSVRQATELHALVTTSG--RLLHPPSAAHLLNSLTSCISPSDPL-HLRYALSLFDRMPC 65

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA-ITQGLW 184
              +  +A+ A +   S     + L+R+M  V + P+      +   CA  GA +  G  
Sbjct: 66  STFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRM 125

Query: 185 VHSYAKRYHLEKNV-ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           +H+   R  L   V ++A+ ++ MY++ G    A   F+  S KD  AW  +ISG+A  G
Sbjct: 126 LHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMG 185

Query: 244 ---DAKK----------------------------SLELFDRMVKSGTQPTETTFVAVLT 272
              DA++                            +++ F+ M+  G  P E T + +L+
Sbjct: 186 LLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLS 245

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQL---EHYACVVDLLARAGMVEEAEKFIEEKMGG 329
            C   K     LN   ++  + G +  L   +    ++D+ A+ G    A +  +    G
Sbjct: 246 ACGQLK----DLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRG 301

Query: 330 LGGGDANVWGALLSA-CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            G      W A++   C++ G +++   ++ ++ +  +  F++ +  Y
Sbjct: 302 RG---PQPWNAMIDGYCKV-GHVDIARSLFDQMEDHDVITFNSLITGY 345


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 226/383 (59%), Gaps = 6/383 (1%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D  + ++++  Y  +  M  AR+LFD+ P RDV++W T+++GY  +GD E    +F+ MP
Sbjct: 89  DIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP 148

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGL 183
           ERN  SW+ ++  Y++     EVL  F++M + G + PN++ +  VL+ACA LGA   G 
Sbjct: 149 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGK 208

Query: 184 WVHSYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
           WVH Y +     K +V +  A++DMY KCG +  A+ VF+GI  +D  +WN MI+G+A +
Sbjct: 209 WVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAH 268

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G   ++L LF  M  SG  P + TFV VL  C H  +V DGL  F +M   + + P++EH
Sbjct: 269 GHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEH 328

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
             CVVDLL+RAG + +A +FI  KM      DA +W  LL A ++Y K+++G     +L 
Sbjct: 329 CGCVVDLLSRAGFLTQAVEFI-NKMP--VKADAVIWATLLGASKVYKKVDIGEVALEELI 385

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           ++   + +  V+  NIY +AG   +A +++  + +TG KK+ G S IE +  + +F +  
Sbjct: 386 KLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSG 445

Query: 423 NRHAQAGEIYRVIHSFLKMSNLV 445
            +H +  E+ R++   LK  N++
Sbjct: 446 EKHPRTEELQRILRE-LKSFNIL 467



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 36/240 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I+GY Q       +  +  M+D G   PN+ T   ++ AC  LG  + FG +VH +   
Sbjct: 158 LIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFD-FGKWVHKYGET 216

Query: 60  FGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            G+ + D  V ++L++ Y     +  A  +F     RD+++W TM++G            
Sbjct: 217 LGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMING------------ 264

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
                           +AA+   +   E L+LF +M+  G+ P++   V VL AC H+G 
Sbjct: 265 ----------------LAAHGHGT---EALNLFHEMKNSGISPDKVTFVGVLCACKHMGL 305

Query: 179 ITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           +  GL + +S    + +   +     VVD+ S+ G +  A+     +  K DA  W  ++
Sbjct: 306 VEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 365


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/435 (32%), Positives = 231/435 (53%), Gaps = 35/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y+  N     V  ++ ML  G  PN  T   L+K C   G LE  G  +HA  ++ 
Sbjct: 299 MIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALE-LGKLLHAFTLRN 357

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF                                  +V  T  +D YGK GD  +AR +F
Sbjct: 358 GF-------------------------------TLSLVLATAFIDMYGKCGDVRSARSVF 386

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +    ++ + WSA++++Y++ +   E   +F  M   G++PNE  +VS+L  CA  G++ 
Sbjct: 387 DSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLE 446

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+HSY  +  ++ ++IL T+ VDMY+ CG + +A  +F   +++D   WNAMISG A
Sbjct: 447 MGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFA 506

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  + +LELF+ M   G  P + TF+  L  C+H+ ++++G  LF  M   +G  P++
Sbjct: 507 MHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKV 566

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+++EA + I+         +  V+G+ L+AC+++  I++G    ++
Sbjct: 567 EHYGCMVDLLGRAGLLDEAHELIKSMP---MRPNIAVFGSFLAACKLHKNIKLGEWAAKQ 623

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
              +       +VL  NIY  A    +   +R+ + + G+ K+PG S IEVNG++ EF+ 
Sbjct: 624 FLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIM 683

Query: 421 GDNRHAQAGEIYRVI 435
           GD  H  A ++Y +I
Sbjct: 684 GDREHPDAKKVYEMI 698



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 158/313 (50%), Gaps = 10/313 (3%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++D Y K  +   AR +F+ + + + +SW+A++AAY   ++  E + LF +M   GM 
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           PNE  ++S++  C   GA+  G  +H++  R     +++LATA +DMY KCG V SA SV
Sbjct: 326 PNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSV 385

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F+   +KD   W+AMIS  A N    ++ ++F  M   G +P E T V++L  C  A  +
Sbjct: 386 FDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSL 445

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
             G  +   +    G++  +      VD+ A  G ++ A +   E        D ++W A
Sbjct: 446 EMGKWIHSYIDK-QGIKGDMILKTSFVDMYANCGDIDTAHRLFAEAT----DRDISMWNA 500

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFS-THVLSYNIYKEAGWDMEANKV-RKLISET 398
           ++S   ++G  E    ++ ++  +G+T    T + + +    +G   E  ++  K++ E 
Sbjct: 501 MISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEF 560

Query: 399 GMKKKP---GCSV 408
           G   K    GC V
Sbjct: 561 GFTPKVEHYGCMV 573



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 155/346 (44%), Gaps = 39/346 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y++ N P  +   Y  M     E +N+  P ++KAC ++ P    G  VH  VVK 
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLI-PSFLLGQEVHGFVVKN 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV ++L+  YS V  +  AR LFDK  ++DVV+W+TM+  Y + G  +      
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD------ 207

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                    E L L R M  + +KP+E G++S+    A L  + 
Sbjct: 208 -------------------------EALDLLRDMHVMRVKPSEIGMISITHVLAELADLK 242

Query: 181 QGLWVHSYAKRYHL--EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G  +H+Y  R     +  V L TA++DMY KC ++  A  VF+G+S     +W AMI+ 
Sbjct: 243 LGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAA 302

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
                +  + + LF +M+  G  P E T ++++  C  A  +  G  L    +   G   
Sbjct: 303 YIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFTL 361

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            L      +D+  + G V  A    +         D  +W A++S+
Sbjct: 362 SLVLATAFIDMYGKCGDVRSARSVFD----SFKSKDLMMWSAMISS 403



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 77/168 (45%), Gaps = 11/168 (6%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           NA   S ++ +Y + +   +   ++  M+    + +   + SVL AC  + +   G  VH
Sbjct: 88  NAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVH 147

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
            +  +     +V +  A++ MYS+ G +  A  +F+ I NKD  +W+ MI     +G   
Sbjct: 148 GFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLD 207

Query: 247 KSLELFDRMVKSGTQPTETTFVAV-----------LTTCTHAKMVRDG 283
           ++L+L   M     +P+E   +++           L    HA ++R+G
Sbjct: 208 EALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNG 255


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 140/383 (36%), Positives = 226/383 (59%), Gaps = 6/383 (1%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D  + ++++  Y  +  M  AR+LFD+ P RDV++W T+++GY  +GD E    +F+ MP
Sbjct: 36  DIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP 95

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGL 183
           ERN  SW+ ++  Y++     EVL  F++M + G + PN++ +  VL+ACA LGA   G 
Sbjct: 96  ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGK 155

Query: 184 WVHSYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
           WVH Y +     K +V +  A++DMY KCG +  A+ VF+GI  +D  +WN MI+G+A +
Sbjct: 156 WVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAH 215

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G   ++L LF  M  SG  P + TFV VL  C H  +V DGL  F +M   + + P++EH
Sbjct: 216 GHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEH 275

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
             CVVDLL+RAG + +A +FI  KM      DA +W  LL A ++Y K+++G     +L 
Sbjct: 276 CGCVVDLLSRAGFLTQAVEFI-NKMP--VKADAVIWATLLGASKVYKKVDIGEVALEELI 332

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           ++   + +  V+  NIY +AG   +A +++  + +TG KK+ G S IE +  + +F +  
Sbjct: 333 KLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSG 392

Query: 423 NRHAQAGEIYRVIHSFLKMSNLV 445
            +H +  E+ R++   LK  N++
Sbjct: 393 EKHPRTEELQRILRE-LKSFNIL 414



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 36/240 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I+GY Q       +  +  M+D G   PN+ T   ++ AC  LG  + FG +VH +   
Sbjct: 105 LIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFD-FGKWVHKYGET 163

Query: 60  FGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            G+ + D  V ++L++ Y     +  A  +F     RD+++W TM++G            
Sbjct: 164 LGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMING------------ 211

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
                           +AA+   +   E L+LF +M+  G+ P++   V VL AC H+G 
Sbjct: 212 ----------------LAAHGHGT---EALNLFHEMKNSGISPDKVTFVGVLCACKHMGL 252

Query: 179 ITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           +  GL + +S    + +   +     VVD+ S+ G +  A+     +  K DA  W  ++
Sbjct: 253 VEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 312



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +EKNV+L T++++ Y     + SA   F+    +D   WN MISG    G+  ++  LFD
Sbjct: 2   VEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLFD 61

Query: 254 RM 255
           +M
Sbjct: 62  QM 63


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/427 (34%), Positives = 234/427 (54%), Gaps = 36/427 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ ML+ G  P+ YTF  L+KAC      E  G   H   VK G  E  +V+        
Sbjct: 130 FVRMLEEGVAPDTYTFVSLLKACAAARAGEE-GRQAHGVAVKVGAAEHEYVLP------- 181

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                   T+++ Y + GD   AR +F ++     VS++A++ A
Sbjct: 182 ------------------------TLINMYAECGDARAARTMFGRVDGECVVSYNAMITA 217

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             R S   E L LFR+MQ  G+K     L+SVL+ACA LGA+  G W+H Y ++  L+  
Sbjct: 218 AVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSL 277

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + TA++DMY KCG +  A+SVF+G+ ++D  AW+ MI   A +   ++++ LF+ M K
Sbjct: 278 VKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKK 337

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P + TF+ VL  C+H+ +V +GL  F++M   +G+ P ++HY CV DLLAR+G ++
Sbjct: 338 QGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMRE-FGLVPGIKHYGCVADLLARSGQLD 396

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
            A +FI+E         A +W  LLSAC   G  ++G +V+ ++ E+  +    +V+  N
Sbjct: 397 RAYEFIDELP---IKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSN 453

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           +    G   E N+VRKL++E G+ K PGCS IEV+  V EF AGD RH ++ +  R++  
Sbjct: 454 LCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDG 513

Query: 438 FLKMSNL 444
            ++   L
Sbjct: 514 VIEQLKL 520



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/322 (22%), Positives = 134/322 (41%), Gaps = 39/322 (12%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS-----LVHKMG 83
             +   P +  C  L  L      +HA  VK G    P  V+ LL   +        ++ 
Sbjct: 30  QQHPLLPYLPQCTTLRALAQ----LHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLS 85

Query: 84  TARALFDKSPDR-DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
            AR +FD+ P   DVV + T++ GY +      AR   E                     
Sbjct: 86  YARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPPAE--------------------- 124

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
              E   +F +M E G+ P+    VS+L ACA   A  +G   H  A +    ++  +  
Sbjct: 125 ---EAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLP 181

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
            +++MY++CG   +A ++F  +  +   ++NAMI+    +    ++L LF  M   G + 
Sbjct: 182 TLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKL 241

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           T  T ++VL+ C     +  G  + E +  V  ++  ++    ++D+  + G +E+A   
Sbjct: 242 TSVTLISVLSACALLGALELGRWIHEYVRKVQ-LDSLVKVNTALIDMYGKCGSLEDAISV 300

Query: 323 IEEKMGGLGGGDANVWGALLSA 344
            +    G+   D   W  ++ A
Sbjct: 301 FQ----GMESRDRQAWSVMIVA 318



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 113/258 (43%), Gaps = 33/258 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI   ++++ P  ++  + +M   G +  + T   ++ AC +LG LE  G ++H +V K 
Sbjct: 214 MITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALE-LGRWIHEYVRKV 272

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                  V ++L++ Y     +  A ++F     RD   W+ M+                
Sbjct: 273 QLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMI---------------- 316

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                           AY+  S  +E +SLF +M++ G+KP++   + VL AC+H G ++
Sbjct: 317 ---------------VAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVS 361

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA-WNAMISGV 239
           +GL      + + L   +     V D+ ++ G +  A    + +  K     W  ++S  
Sbjct: 362 EGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSAC 421

Query: 240 AMNGDAKKSLELFDRMVK 257
              GDA    ++F+R+++
Sbjct: 422 GSRGDADLGKQVFERILE 439


>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
          Length = 1596

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/444 (35%), Positives = 245/444 (55%), Gaps = 45/444 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVV 58
           +IR Y +++ P+L++  +  MLD     P+ +TFP +I AC   L  L   G  +H  V+
Sbjct: 75  LIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWML--LGKQIHNWVL 132

Query: 59  KFGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           K G    D  V ++L+ FY+    MG                               +AR
Sbjct: 133 KNGVASSDRHVQTALVRFYAECCAMG-------------------------------DAR 161

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF+++P  + V W+ ++  Y R     E L+ FR M   G++P+E  L + L  CA LG
Sbjct: 162 KLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLG 221

Query: 178 AITQGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           A+ QG W+H Y  KR  LE +V + TA+VDMY+KCG +  ++ VFEG++ ++  +W+AMI
Sbjct: 222 ALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMI 281

Query: 237 SGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
            G A++G  +K+++  +RM V+ G +P     + V+  C HA +  +G  L ENM A YG
Sbjct: 282 GGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYG 341

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P+ EHY+C+VDLL RAG ++EA K I  +M       A VWGALLS CR +  +++  
Sbjct: 342 ILPKHEHYSCMVDLLCRAGQLDEALKLI-RRMP--MKPRAAVWGALLSGCRTHNNVDLAE 398

Query: 356 RVWRKLAEMGITDFSTHVLSY----NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
              R+L  +G  D +    +Y    NIY  A    +A ++R++I +  +K KPGCS+IEV
Sbjct: 399 LAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIEV 458

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVI 435
            G V +F++GD  H    +I+ ++
Sbjct: 459 EGEVNQFVSGDISHPCLAQIHEML 482


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 231/432 (53%), Gaps = 35/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q     +++     M      PN  T+  +++ C     LE+ G  VH ++++ 
Sbjct: 269 LIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEH-GKKVHRYIIQS 327

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G + +VV++L+  Y                                K G  + AR+LF
Sbjct: 328 GYGREIWVVNALITMYC-------------------------------KCGGLKEARKLF 356

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +P R+ V+W+A++  Y+++    E + LFR+MQ+ G+KP++    S LT+C+    + 
Sbjct: 357 GDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQ 416

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +H          +V L +A+V MY+KCG +  A  VF  +S ++  AW AMI+G A
Sbjct: 417 EGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCA 476

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  +++LE F++M K G +P + TF +VL+ CTH  +V +G   F +M   YG++P +
Sbjct: 477 QHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMV 536

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C VDLL RAG +EEAE  I       G    +VWGALLSACRI+  +E G R    
Sbjct: 537 EHYSCFVDLLGRAGHLEEAENVILTMPFQPG---PSVWGALLSACRIHSDVERGERAAEN 593

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + ++   D   +V   NIY  AG   +A KVR+++ +  + K+PG S IEV+G V  F  
Sbjct: 594 VLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHV 653

Query: 421 GDNRHAQAGEIY 432
            D  H +A EIY
Sbjct: 654 EDKSHPEAKEIY 665



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 170/368 (46%), Gaps = 41/368 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGP-LENFGMFVHAHVVK 59
           MI  ++  N    +  CY  M   G +P+  TF  L+ A     P L   G  VH  + K
Sbjct: 168 MIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNA--FTNPELLQVGQKVHMEIAK 225

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   +P V +SL                               V  Y K GD   A+ +
Sbjct: 226 AGLELEPRVGTSL-------------------------------VGMYAKCGDISKAQVI 254

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+K+PE+N V+W+ ++A Y++       L L  +MQ+  + PN+    S+L  C    A+
Sbjct: 255 FDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLAL 314

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VH Y  +    + + +  A++ MY KCG +  A  +F  + ++D   W AM++G 
Sbjct: 315 EHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGY 374

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM-SAVYGVEP 298
           A  G   ++++LF RM + G +P + TF + LT+C+    +++G ++ + +  A Y ++ 
Sbjct: 375 AQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            L+  + +V + A+ G +++A     +    +   +   W A+++ C  +G+       +
Sbjct: 435 YLQ--SALVSMYAKCGSMDDARLVFNQ----MSERNVVAWTAMITGCAQHGRCREALEYF 488

Query: 359 RKLAEMGI 366
            ++ + GI
Sbjct: 489 EQMKKQGI 496



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 155/347 (44%), Gaps = 39/347 (11%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M+  G    +  F  L++ C  L  LE  G  VHA ++K G   + ++ ++LL  Y+   
Sbjct: 87  MILQGTRVYSDVFRGLLQECARLRSLEQ-GREVHAAILKSGIQPNRYLENTLLSMYA--- 142

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                       K G   +AR +F+ + +RN VSW+A++ A+  
Sbjct: 143 ----------------------------KCGSLTDARRVFDGIRDRNIVSWTAMIEAFVA 174

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
            +   E    +  M+  G KP++   VS+L A  +   +  G  VH    +  LE    +
Sbjct: 175 GNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRV 234

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            T++V MY+KCG +  A  +F+ +  K+   W  +I+G A  G    +LEL ++M ++  
Sbjct: 235 GTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEV 294

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            P + T+ ++L  CT    +  G  +    + + YG E  + +   ++ +  + G ++EA
Sbjct: 295 APNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVN--ALITMYCKCGGLKEA 352

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            K      G L   D   W A+++     G  +    ++R++ + GI
Sbjct: 353 RKL----FGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGI 395



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 105/220 (47%), Gaps = 5/220 (2%)

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            KE L +   M   G +        +L  CA L ++ QG  VH+   +  ++ N  L   
Sbjct: 77  LKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 136

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++ MY+KCG +  A  VF+GI +++  +W AMI          ++ + ++ M  +G +P 
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPD 196

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + TFV++L   T+ ++++ G  +   ++   G+E +      +V + A+ G + +A+   
Sbjct: 197 KVTFVSLLNAFTNPELLQVGQKVHMEIAKA-GLELEPRVGTSLVGMYAKCGDISKAQVIF 255

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
           ++    L   +   W  L++     G+++V   +  K+ +
Sbjct: 256 DK----LPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQ 291


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/440 (33%), Positives = 243/440 (55%), Gaps = 39/440 (8%)

Query: 3   RGYMQANFPKLSVF-CYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           RGY ++  P L VF  ++++L+    P+NYTFP L+KAC +   LE  G  +H   +K G
Sbjct: 104 RGYSRSTNP-LEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEE-GRQLHCLSMKLG 161

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
                                           D +V    T+++ Y +  D + AR +F+
Sbjct: 162 V-------------------------------DDNVYVCPTLINMYTECEDVDAARCVFD 190

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           ++ E   V ++A++  Y+R +   E LSLFR+MQ   +KPNE  L+SVL++CA LG++  
Sbjct: 191 RIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDL 250

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G W+H YAK++   K V + TA++DM++KCG +  A+S+FE +  KD  AW+AMI   A 
Sbjct: 251 GKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYAN 310

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G A+ S+ +F+RM     QP E TF+ +L  C+H  +V +G   F  M   +G+ P ++
Sbjct: 311 HGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIK 370

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY  +VDLL RAG +E+A +FI++           +W  LL+AC  +  +E+  +V  ++
Sbjct: 371 HYGSMVDLLGRAGHLEDAYEFIDKLP---ISPTPMLWRILLAACSSHNNLELAEKVSERI 427

Query: 362 AEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
            E+  +    +V+  N+Y +   W+   + +RK++ +    K PGCS IEVN VV EF +
Sbjct: 428 LELDDSHGGDYVILSNLYARNKKWEA-VDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFS 486

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
           GD   +   +++R +   +K
Sbjct: 487 GDGVKSATTKLHRALDEMVK 506



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 120/237 (50%), Gaps = 5/237 (2%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR LF+ M E + V +++I   YSR ++  EV +LF ++ E  + P+     S+L ACA 
Sbjct: 84  ARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAV 143

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             A+ +G  +H  + +  ++ NV +   +++MY++C  V +A  VF+ I       +NAM
Sbjct: 144 AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAM 203

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A      ++L LF  M     +P E T ++VL++C     +  G  + E  +  +G
Sbjct: 204 ITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHE-YAKKHG 262

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
               ++    ++D+ A+ G +++A    E     +   D   W A++ A   +G+ E
Sbjct: 263 FCKYVKVNTALIDMFAKCGSLDDAVSIFE----NMRYKDTQAWSAMIVAYANHGQAE 315



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/259 (19%), Positives = 116/259 (44%), Gaps = 34/259 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY + N P  ++  + +M     +PN  T   ++ +C +LG L+  G ++H +  K 
Sbjct: 203 MITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLD-LGKWIHEYAKKH 261

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF +   V ++L++ ++    +  A ++F+    +D   W+ M+  Y   G  EN+  +F
Sbjct: 262 GFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMF 321

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+M   N                               ++P+E   + +L AC+H G + 
Sbjct: 322 ERMRSEN-------------------------------VQPDEITFLGLLNACSHTGLVE 350

Query: 181 QGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G    S+    + +  ++    ++VD+  + GH+  A    + +  +     W  +++ 
Sbjct: 351 EGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAA 410

Query: 239 VAMNGDAKKSLELFDRMVK 257
            + + + + + ++ +R+++
Sbjct: 411 CSSHNNLELAEKVSERILE 429


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 239/435 (54%), Gaps = 30/435 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q    K ++  ++ M +  G   N+ T   ++ ACV  G        +H  VVK
Sbjct: 288 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVK 346

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D FV ++L++ YS + K+  A  +F K  DRD+VTW TM+ GY      E+A  L
Sbjct: 347 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 406

Query: 120 FEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
             KM   ER       +    SR+S                +KPN   L+++L +CA L 
Sbjct: 407 LHKMQNLERK------VSKGASRVS----------------LKPNSITLMTILPSCAALS 444

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ +G  +H+YA + +L  +V + +A+VDMY+KCG +  +  VF+ I  K+   WN +I 
Sbjct: 445 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 504

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              M+G+ +++++L   M+  G +P E TF++V   C+H+ MV +GL +F  M   YGVE
Sbjct: 505 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 564

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P  +HYACVVDLL RAG ++EA + +   M       A  W +LL A RI+  +E+G   
Sbjct: 565 PSSDHYACVVDLLGRAGRIKEAYQLM--NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 622

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L ++     S +VL  NIY  AG WD +A +VR+ + E G++K+PGCS IE    V 
Sbjct: 623 AQNLIQLEPNVASHYVLLANIYSSAGLWD-KATEVRRNMKEQGVRKEPGCSWIEHGDEVH 681

Query: 417 EFLAGDNRHAQAGEI 431
           +F+AGD+ H Q+ ++
Sbjct: 682 KFVAGDSSHPQSEKL 696



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 134/269 (49%), Gaps = 35/269 (13%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M+ +G +P+NY FP L+KA   L  +E  G  +HAHV KFG+G D   V++         
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDME-LGKQIHAHVYKFGYGVDSVTVAN--------- 50

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                T+V+ Y K GDF    ++F+++ ERN VSW++++++   
Sbjct: 51  ---------------------TLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS 89

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG---AITQGLWVHSYAKRYHLEKN 197
              ++  L  FR M +  ++P+   LVSV+TAC++L     +  G  VH+Y  R   E N
Sbjct: 90  FEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELN 148

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             +   +V MY K G + S+  +      +D   WN ++S +  N    ++LE    MV 
Sbjct: 149 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 208

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            G +P E T  +VL  C+H +M+R G  L
Sbjct: 209 EGVEPDEFTISSVLPACSHLEMLRTGKEL 237



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLV 79
           MLD   EP+++T   ++ AC  L   E   M    H      GE + F+++         
Sbjct: 103 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN--------- 153

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                                 T+V  YGK+G   +++ L      R+ V+W+ ++++  
Sbjct: 154 ----------------------TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 191

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNV 198
           +     E L   R+M   G++P+E  + SVL AC+HL  +  G  +H+YA K   L++N 
Sbjct: 192 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 251

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            + +A+VDMY  C  V S   VF+G+ ++  G WNAMI+G + N   K++L LF  M +S
Sbjct: 252 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 311

Query: 259 -GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G     TT   V+  C     VR G   F    A++G              + + G+  
Sbjct: 312 AGLLANSTTMAGVVPAC-----VRSG--AFSRKEAIHG-------------FVVKRGL-- 349

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           + ++F++                L+      GKI++  R++ K+ +  +  ++T +  Y
Sbjct: 350 DRDRFVQ--------------NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 394



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 26/286 (9%)

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTAR-----ALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           G   D F +SS+L   S +  + T +     AL + S D +    + +VD Y       +
Sbjct: 210 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 269

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACA 174
            R +F+ M +R    W+A++A YS+    KE L LF  M+E  G+  N + +  V+ AC 
Sbjct: 270 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 329

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
             GA ++   +H +  +  L+++  +   ++DMYS+ G +  A+ +F  + ++D   WN 
Sbjct: 330 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 389

Query: 235 MISGVAMNGDAKKSLELFDRM------VKSGT-----QPTETTFVAVLTTCTHAKMVRDG 283
           MI+G   +   + +L L  +M      V  G      +P   T + +L +C     +  G
Sbjct: 390 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 449

Query: 284 LNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEE 325
             +       Y ++  L     V    VD+ A+ G ++ + K  ++
Sbjct: 450 KEIH-----AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 490



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 8/191 (4%)

Query: 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLEKNVILATAVVDMYSKCGHVH 215
           +G+KP+     ++L A A L  +  G  +H++  ++ +   +V +A  +V++Y KCG   
Sbjct: 4   LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           +   VF+ IS ++  +WN++IS +      + +LE F  M+    +P+  T V+V+T C+
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 123

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK--MGGLGGG 333
           +  M  +GL + + + A YG+     +   +  L+A  G   +  K    K  +G  GG 
Sbjct: 124 NLPM-PEGLMMGKQVHA-YGLRKGELNSFIINTLVAMYG---KLGKLASSKVLLGSFGGR 178

Query: 334 DANVWGALLSA 344
           D   W  +LS+
Sbjct: 179 DLVTWNTVLSS 189


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 244/445 (54%), Gaps = 31/445 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q      ++  +  M+  G  PN  T   ++ AC  LG     GM +HA+ +K 
Sbjct: 227 VIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ-GMEIHAYSLK- 284

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                    + LL   +L +  G          D D++ +  ++D Y K   F+ AR +F
Sbjct: 285 ---------NCLL---TLDNDFG--------GEDEDLMVYNALIDMYSKCRSFKAARSIF 324

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHL 176
           + +P  ERN V+W+ ++  +++  D  + L LF +M  +  G+ PN   +  +L ACAHL
Sbjct: 325 DDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHL 384

Query: 177 GAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            AI  G  +H+Y  R+H   +    +A  +++MYSKCG V +A  VF+ +S K A +W +
Sbjct: 385 AAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTS 444

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M++G  M+G   ++L++FD+M K+G  P + TF+ VL  C+H  MV  GL+ F++MSA Y
Sbjct: 445 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADY 504

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+ P+ EHYA  +DLLAR G +++A K +++         A VW ALLSACR++  +E+ 
Sbjct: 505 GLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMP---MEPTAVVWVALLSACRVHSNVELA 561

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL EM   +  ++ L  NIY  AG   +  ++R L+ ++G+KK+PGCS ++    
Sbjct: 562 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 621

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
              F  GD  H  + +IY ++ S +
Sbjct: 622 TASFFVGDRSHPLSPQIYALLESLI 646



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 172/332 (51%), Gaps = 23/332 (6%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VH + ++ G   D FV ++L++ Y+    M  A  +F+    +DVV+W  MV GY + G+
Sbjct: 142 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 201

Query: 113 FENARELFEKMPERNA----VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           F+ A ELF+ M + N     V+W+A++A YS+     E L++FRQM   G  PN   ++S
Sbjct: 202 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIIS 261

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHL----------EKNVILATAVVDMYSKCGHVHSAL 218
           VL+ACA LGA +QG+ +H+Y+ +  L          ++++++  A++DMYSKC    +A 
Sbjct: 262 VLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 321

Query: 219 SVFEGI--SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTTC 274
           S+F+ I    ++   W  MI G A  GD+  +L+LF  M+    G  P   T   +L  C
Sbjct: 322 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 381

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
            H   +R G  +   +   +  +      A C++++ ++ G V+ A    +     +   
Sbjct: 382 AHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDS----MSQK 437

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            A  W ++++   ++G+      ++ K+ + G
Sbjct: 438 SAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 469



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 29/273 (10%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G   +++T P ++KAC  L P    G   H  +   GF  + F+ ++L+  YS   
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGEL-PSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 59

Query: 81  KMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
            +  A  +FD+   R   DV++W ++V  + K  +   A +LF KM              
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKM-------------- 105

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                      +L    +    + +   +V++L AC  L A+ Q   VH  A R     +
Sbjct: 106 -----------TLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 154

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V +  A++D Y+KCG + +A+ VF  +  KD  +WNAM++G + +G+ K + ELF  M K
Sbjct: 155 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 214

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
                   T+ AV+   +      + LN+F  M
Sbjct: 215 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 247



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 126/318 (39%), Gaps = 54/318 (16%)

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M   G + +   L  VL AC  L +   G   H        E NV +  A+V MYS+CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 214 VHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTE----- 264
           +  A  +F+ I+ +   D  +WN+++S    + +A  +L+LF +M +    +PT      
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 265 TTFVAVLTTC-----------THAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLA 311
            + V +L  C            H   +R+G  L++F   +              ++D  A
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNA--------------LIDAYA 166

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFS 370
           + G++E A K        +   D   W A+++     G  +    +++ + +  I  D  
Sbjct: 167 KCGLMENAVKVFNM----MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMV 222

Query: 371 THVLSYNIYKEAGWDMEA-NKVRKLISETGMKKKPGC----SVIEVNGVVEEFLAGDNRH 425
           T       Y + G   EA N  R++I    +   P C    SV+     +  F  G   H
Sbjct: 223 TWTAVIAGYSQRGCSHEALNVFRQMIFSGSL---PNCVTIISVLSACASLGAFSQGMEIH 279

Query: 426 AQAGEIYRVIHSFLKMSN 443
           A     Y + +  L + N
Sbjct: 280 A-----YSLKNCLLTLDN 292


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 239/435 (54%), Gaps = 30/435 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q    K ++  ++ M +  G   N+ T   ++ ACV  G        +H  VVK
Sbjct: 375 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVK 433

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D FV ++L++ YS + K+  A  +F K  DRD+VTW TM+ GY      E+A  L
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 493

Query: 120 FEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
             KM   ER       +    SR+S                +KPN   L+++L +CA L 
Sbjct: 494 LHKMQNLERK------VSKGASRVS----------------LKPNSITLMTILPSCAALS 531

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ +G  +H+YA + +L  +V + +A+VDMY+KCG +  +  VF+ I  K+   WN +I 
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              M+G+ +++++L   M+  G +P E TF++V   C+H+ MV +GL +F  M   YGVE
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P  +HYACVVDLL RAG ++EA + +   M       A  W +LL A RI+  +E+G   
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLM--NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L ++     S +VL  NIY  AG WD +A +VR+ + E G++K+PGCS IE    V 
Sbjct: 710 AQNLIQLEPNVASHYVLLANIYSSAGLWD-KATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768

Query: 417 EFLAGDNRHAQAGEI 431
           +F+AGD+ H Q+ ++
Sbjct: 769 KFVAGDSSHPQSEKL 783



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 147/289 (50%), Gaps = 35/289 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R  +++N  + +V  Y+DM+ +G +P+NY FP L+KA   L  +E  G  +HAHV KF
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDME-LGKQIHAHVYKF 126

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G D   V++                              T+V+ Y K GDF    ++F
Sbjct: 127 GYGVDSVTVAN------------------------------TLVNLYRKCGDFGAVYKVF 156

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG--- 177
           +++ ERN VSW++++++      ++  L  FR M +  ++P+   LVSV+TAC++L    
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH+Y  R   E N  +   +V MY K G + S+  +      +D   WN ++S
Sbjct: 217 GLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            +  N    ++LE    MV  G +P E T  +VL  C+H +M+R G  L
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLV 79
           MLD   EP+++T   ++ AC  L   E   M    H      GE + F+++         
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN--------- 240

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                                 T+V  YGK+G   +++ L      R+ V+W+ ++++  
Sbjct: 241 ----------------------TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNV 198
           +     E L   R+M   G++P+E  + SVL AC+HL  +  G  +H+YA K   L++N 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            + +A+VDMY  C  V S   VF+G+ ++  G WNAMI+G + N   K++L LF  M +S
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 398

Query: 259 -GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G     TT   V+  C     VR G   F    A++G              + + G+  
Sbjct: 399 AGLLANSTTMAGVVPAC-----VRSG--AFSRKEAIHG-------------FVVKRGL-- 436

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           + ++F++                L+      GKI++  R++ K+ +  +  ++T +  Y
Sbjct: 437 DRDRFVQ--------------NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 26/286 (9%)

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTAR-----ALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           G   D F +SS+L   S +  + T +     AL + S D +    + +VD Y       +
Sbjct: 297 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACA 174
            R +F+ M +R    W+A++A YS+    KE L LF  M+E  G+  N + +  V+ AC 
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
             GA ++   +H +  +  L+++  +   ++DMYS+ G +  A+ +F  + ++D   WN 
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 476

Query: 235 MISGVAMNGDAKKSLELFDRM------VKSGT-----QPTETTFVAVLTTCTHAKMVRDG 283
           MI+G   +   + +L L  +M      V  G      +P   T + +L +C     +  G
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536

Query: 284 LNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEE 325
             +       Y ++  L     V    VD+ A+ G ++ + K  ++
Sbjct: 537 KEIH-----AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 113/222 (50%), Gaps = 8/222 (3%)

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           R+   W  ++ +  R +  +E +  +  M  +G+KP+     ++L A A L  +  G  +
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 186 HSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           H++  ++ +   +V +A  +V++Y KCG   +   VF+ IS ++  +WN++IS +     
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            + +LE F  M+    +P+  T V+V+T C++  M  +GL + + + A YG+  + E  +
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHA-YGLR-KGELNS 236

Query: 305 CVVDLLARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSA 344
            +++ L    M  +  K    K  +G  GG D   W  +LS+
Sbjct: 237 FIINTL--VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS 276


>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g28640-like [Vitis vinifera]
          Length = 511

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 243/444 (54%), Gaps = 45/444 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVV 58
           +IR Y +++ P+L++  +  MLD     P+ +TFP +I AC   L  L   G  +H  V+
Sbjct: 75  LIRAYSRSSTPQLALHYFQLMLDDENVGPDQHTFPFIISACTNSLWML--LGKQIHNWVL 132

Query: 59  KFGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           K G    D  V ++L+ FY+    MG                               +AR
Sbjct: 133 KNGVASSDRHVQTALVRFYAECCAMG-------------------------------DAR 161

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF+++P  + V W+ ++  Y R     E L+ FR M   G++P+E  L + L  CA LG
Sbjct: 162 KLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQLG 221

Query: 178 AITQGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           A+ QG W+H Y  KR  LE +V + TA+VDMY+KCG +  ++ VFEG++ ++  +W+AMI
Sbjct: 222 ALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMTKRNVFSWSAMI 281

Query: 237 SGVAMNGDAKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
            G A++G  +K+++  +RM V+ G +P     + V+  C HA +  +G  L ENM A YG
Sbjct: 282 GGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQFLLENMEARYG 341

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P+ EHY+C+VDLL RAG ++EA K I           A VWGALLS CR +  +++  
Sbjct: 342 ILPKHEHYSCMVDLLCRAGQLDEALKLIRRMP---MKPRAAVWGALLSGCRTHNNVDLAE 398

Query: 356 RVWRKLAEMGITDFSTHVLSY----NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
              R+L  +G  D +    +Y    NIY  A    +A ++R++I +  +K KPGCS+IEV
Sbjct: 399 LAARELLMVGNGDGTEEDGAYVQLSNIYLAAQKCEDACRIRRMIGDKRIKTKPGCSLIEV 458

Query: 412 NGVVEEFLAGDNRHAQAGEIYRVI 435
            G V +F++GD  H    +I+ ++
Sbjct: 459 EGEVNQFVSGDISHPCLAQIHEML 482


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 234/432 (54%), Gaps = 34/432 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+++ F + ++  +  M       ++YT+  +  A   L  L + G  VHA  +K 
Sbjct: 346 MISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCL-SLGKKVHARAIKS 404

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +   +S+                               + + Y K G  E+ R++F
Sbjct: 405 GLEVNYVSISN------------------------------AVANAYAKCGSLEDVRKVF 434

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +R+ +SW++++ AYS+ S++ + + +F  M+  G+ PN+    SVL +CA+L  + 
Sbjct: 435 NRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLE 494

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH    +  L+ +  + +A+VDMY+KCG +  A  VF  ISN D  +W A+I+G A
Sbjct: 495 YGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA 554

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G    +L+LF RMV+ G +P   TF+ VL  C+H  +V +GL  F+ M   YG+ P++
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEM 614

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLL+R G + +A +FI          +  VW  LL ACR++G +E+G    +K
Sbjct: 615 EHYACIVDLLSRVGHLNDAMEFISRMP---VEPNEMVWQTLLGACRVHGNVELGELAAQK 671

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           +      + +T+VL  N Y E+G   +   +R ++ E G+KK+PGCS I VNG + +F A
Sbjct: 672 ILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQGVKKEPGCSWISVNGTLHKFYA 731

Query: 421 GDNRHAQAGEIY 432
           GD +H +  +IY
Sbjct: 732 GDQQHPEKDKIY 743



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 128/284 (45%), Gaps = 47/284 (16%)

Query: 16  FCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           FC  +M   G  P+ + +  +++ C+ L  +E  G  VHA +V  GF    FV ++LL  
Sbjct: 159 FC--EMQSQGIFPDQFAYSGILQICIGLDSIE-LGNMVHAQIVIRGFTSHTFVSTALLNM 215

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y+                               K+ + E++ ++F  M E N VSW+A++
Sbjct: 216 YA-------------------------------KLQEIEDSYKVFNTMTEVNVVSWNAMI 244

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             ++    + +   LF +M   G+ P+    + V  A   L  + +   V  YA    ++
Sbjct: 245 TGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVD 304

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            N ++ TA++DM SKCG +  A S+F    I+ +    WNAMISG   +G  +K+LELF 
Sbjct: 305 SNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFA 364

Query: 254 RMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNL 286
           +M ++       T+ +V                HA+ ++ GL +
Sbjct: 365 KMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEV 408



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/282 (24%), Positives = 138/282 (48%), Gaps = 20/282 (7%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEK--MPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           D + +  T ++D   K G  + AR +F    +  R    W+A+++ Y R    ++ L LF
Sbjct: 304 DSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELF 363

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN-VILATAVVDMYSK 210
            +M +  +  +     SV  A A L  ++ G  VH+ A +  LE N V ++ AV + Y+K
Sbjct: 364 AKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAK 423

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
           CG +     VF  + ++D  +W ++++  +   +  K++E+F  M   G  P + TF +V
Sbjct: 424 CGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSV 483

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGV--EPQLEHYACV----VDLLARAGMVEEAEKFIE 324
           L +C +       L L E    V+G+  +  L+   C+    VD+ A+ G + +A+K   
Sbjct: 484 LVSCAN-------LCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFN 536

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
                +   D   W A+++    +G ++   +++R++ ++G+
Sbjct: 537 R----ISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGV 574



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 7/232 (3%)

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           S    +V    +   Y K  D + A  LF++M +RN  SW+ ++A  +    F +    F
Sbjct: 100 SNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFF 159

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +MQ  G+ P++     +L  C  L +I  G  VH+         +  ++TA+++MY+K 
Sbjct: 160 CEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKL 219

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
             +  +  VF  ++  +  +WNAMI+G   N     + +LF RM+  G  P   TF+ V 
Sbjct: 220 QEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVA 279

Query: 272 TTCTHAKMVRDGLNLFENMSAV---YGVEPQLEHYACVVDLLARAGMVEEAE 320
                  M+RD +N  + +S      GV+        ++D+ ++ G ++EA 
Sbjct: 280 KA---IGMLRD-VNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEAR 327


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 245/432 (56%), Gaps = 5/432 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y +A+  K +V C+ +ML  G  P++ T   ++ AC  L  LE  G  +H  V + 
Sbjct: 149 LIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLE-LGCSLHLLVKEK 207

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G      +V +L++ Y+     G AR +FD     R   +W  ++DGY K G  + AR L
Sbjct: 208 GMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSL 267

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++M  R+ +++++++  Y      +E L LF  M+   ++ +   +VS+L+ACA LGA+
Sbjct: 268 FDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGAL 327

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG  +H+  +   +E ++ + TA++DMY KCG V+ A  VF+ +  +D  AW AMI+G+
Sbjct: 328 PQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGL 387

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A NG  K  LE F +M   G QP   +++AVLT C+H+ ++ +G   F+ M  +Y + PQ
Sbjct: 388 AFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQ 447

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C++DLL R+G+++EA   ++         ++ +W ++LSACR++ +I++      
Sbjct: 448 IEHYGCMIDLLGRSGLLDEAMDLVKTMP---MQPNSVIWASILSACRVHKRIDLAQCAAE 504

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L ++   + + +V  YNI  ++    +A+K+R L+ E  +KK  G S + V G V +F+
Sbjct: 505 HLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFV 564

Query: 420 AGDNRHAQAGEI 431
             D  H +  EI
Sbjct: 565 VSDKSHPRILEI 576



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 166/369 (44%), Gaps = 44/369 (11%)

Query: 11  PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVV 69
           P +    +  M      P+ +TF  L K      P       +HA  ++       PFV 
Sbjct: 25  PDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVA 84

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SL+  Y+ +   G  R  FD+ P +D V+WT ++ G  KMG   +AR L  + P R+ +
Sbjct: 85  NSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVI 144

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW++++AAYSR    KE +  F+ M   G+ P++  ++ VL+AC+ L  +  G  +H   
Sbjct: 145 SWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLV 204

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKS 248
           K   +  +  L  A++DMY+KCG    A  VF+ +   +   +WNA+I G   +G    +
Sbjct: 205 KEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVA 264

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM------------------ 290
             LFD+M          TF +++T   H+  +R+ L LF NM                  
Sbjct: 265 RSLFDQMEVRDI----ITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSA 320

Query: 291 SAVYGVEPQ-LEHYACV---------------VDLLARAGMVEEAEKFIEEKMGGLGGGD 334
            A  G  PQ    +AC+               +D+  + G V EA    +     +G  D
Sbjct: 321 CASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQR----MGKRD 376

Query: 335 ANVWGALLS 343
            + W A+++
Sbjct: 377 VHAWTAMIA 385



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 176/342 (51%), Gaps = 14/342 (4%)

Query: 73   LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
            ++ + +VHK+G     F  S    V   TT++D YGK   F+++  +F ++P       +
Sbjct: 955  VQIHGIVHKLG-----FSCS---SVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCN 1006

Query: 133  AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA--ITQGLWVHSYAK 190
            +++ +    + F   L +   M   G+ P++    + + A +   +  +T    +HS   
Sbjct: 1007 SLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLV 1066

Query: 191  RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
            +   E ++ + ++++  Y+  G + S+  +FEG+ + +   + A+IS  A  GD  +++E
Sbjct: 1067 KLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAME 1126

Query: 251  LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
            LFD+MV SG +P   TF+  +  C  A M  +G  + E M A   ++P   H+AC+V+LL
Sbjct: 1127 LFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLL 1186

Query: 311  ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
            +R G V+EA + +E+            W +LL +C+ +G+  +G R    L ++G  D +
Sbjct: 1187 SRDGFVKEAMEMMEQSP---LRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPA 1243

Query: 371  THVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
            T +   N + + G    A +++++ +   +KK  G S+IEV+
Sbjct: 1244 TTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1284



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 141/363 (38%), Gaps = 60/363 (16%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            ++RG       +  + C+LDM     E N  ++   +K C   G     G  +H  V+K 
Sbjct: 803  VLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKA 862

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G+      +S+                              ++VD Y  +GD  +  +  
Sbjct: 863  GWIPSNIFLSN------------------------------SLVDLYSAIGDSVDTVKAL 892

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
              +   + +SW++I++ Y+     KE +   +QM   G  P+    VS+L      G   
Sbjct: 893  NDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQ 952

Query: 181  QGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +H    +      +V + T ++DMY KC     +L++F  I +      N++I+  
Sbjct: 953  LGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSS 1012

Query: 240  AMNGDAKKSLELFDRMVKSGTQPTETTFVAV-----------LTTCT--HAKMVRDGLNL 286
                    +LE+   M+  G  P + TF A            LT+C   H+ +V+ G   
Sbjct: 1013 LGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLG--- 1069

Query: 287  FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
            FE   AV      +  YAC       AG +  +    E    GL   +   + A++SAC 
Sbjct: 1070 FEMDMAV--CSSLITAYAC-------AGQLSSSHLIFE----GLLDPNVICFTAIISACA 1116

Query: 347  IYG 349
             YG
Sbjct: 1117 RYG 1119



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 111/273 (40%), Gaps = 38/273 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+++      +   Y  M+  G     +TF  ++  C     L+     +H  V+  
Sbjct: 706 MITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEALQ-----LHGRVLAL 760

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +PFV S+L+  Y  V     A +LF + P ++      ++ G G +          
Sbjct: 761 GLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNL---------- 810

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA-I 179
            K+ E                    E++  F  M+   ++ N       +  C   G  +
Sbjct: 811 -KLTE--------------------ELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWL 849

Query: 180 TQGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            QG  +H    K   +  N+ L+ ++VD+YS  G     +     I ++D  +WN+++S 
Sbjct: 850 EQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSM 909

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
            A  G  K+++    +M+  G  P+  +FV++L
Sbjct: 910 YADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLL 942



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 99/250 (39%), Gaps = 34/250 (13%)

Query: 21   MLDMGFEPNNYTFPPLIKACVI-LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
            M+  G  P++ TF   +KA  +   P       +H+ +VK GF  D  V SSL+  Y+  
Sbjct: 1028 MIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACA 1087

Query: 80   HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
             ++ ++  +F+   D +V+ +T ++    + GD   A ELF+                  
Sbjct: 1088 GQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFD------------------ 1129

Query: 140  RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG-LWVHSYAKRYHLEKNV 198
                         QM   G+KP+    +  +  C   G   +G L +        L+ + 
Sbjct: 1130 -------------QMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDE 1176

Query: 199  ILATAVVDMYSKCGHVHSALSVFEGISNKD-AGAWNAMISGVAMNGDAKKSLELFDRMVK 257
                 +V++ S+ G V  A+ + E    +    AW++++     +G+        + ++ 
Sbjct: 1177 RHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLID 1236

Query: 258  SGTQPTETTF 267
             G +   TT 
Sbjct: 1237 VGRKDPATTL 1246


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 239/435 (54%), Gaps = 30/435 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q    K ++  ++ M +  G   N+ T   ++ ACV  G        +H  VVK
Sbjct: 375 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVK 433

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D FV ++L++ YS + K+  A  +F K  DRD+VTW TM+ GY      E+A  L
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 493

Query: 120 FEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
             KM   ER       +    SR+S                +KPN   L+++L +CA L 
Sbjct: 494 LHKMQNLERK------VSKGASRVS----------------LKPNSITLMTILPSCAALS 531

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+ +G  +H+YA + +L  +V + +A+VDMY+KCG +  +  VF+ I  K+   WN +I 
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
              M+G+ +++++L   M+  G +P E TF++V   C+H+ MV +GL +F  M   YGVE
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P  +HYACVVDLL RAG ++EA + +   M       A  W +LL A RI+  +E+G   
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLM--NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            + L ++     S +VL  NIY  AG WD +A +VR+ + E G++K+PGCS IE    V 
Sbjct: 710 AQNLIQLEPNVASHYVLLANIYSSAGLWD-KATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768

Query: 417 EFLAGDNRHAQAGEI 431
           +F+AGD+ H Q+ ++
Sbjct: 769 KFVAGDSSHPQSEKL 783



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 147/289 (50%), Gaps = 35/289 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R  +++N  + +V  Y+DM+ +G +P+NY FP L+KA   L  +E  G  +HAHV KF
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDME-LGKQIHAHVYKF 126

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G D   V++                              T+V+ Y K GDF    ++F
Sbjct: 127 GYGVDSVTVAN------------------------------TLVNLYRKCGDFGAVYKVF 156

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG--- 177
           +++ ERN VSW++++++      ++  L  FR M +  ++P+   LVSV+TAC++L    
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH+Y  R   E N  +   +V MY K G + S+  +      +D   WN ++S
Sbjct: 217 GLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            +  N    ++LE    MV  G +P E T  +VL  C+H +M+R G  L
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 70/359 (19%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLV 79
           MLD   EP+++T   ++ AC  L   E   M    H      GE + F+++         
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN--------- 240

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                                 T+V  YGK+G   +++ L      R+ V+W+ ++++  
Sbjct: 241 ----------------------TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNV 198
           +     E L   R+M   G++P+E  + SVL AC+HL  +  G  +H+YA K   L++N 
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
            + +A+VDMY  C  V S   VF+G+ ++  G WNAMI+G + N   K++L LF  M +S
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 398

Query: 259 -GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G     TT   V+  C     VR G   F    A++G              + + G+  
Sbjct: 399 AGLLANSTTMAGVVPAC-----VRSG--AFSRKEAIHG-------------FVVKRGL-- 436

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           + ++F++                L+      GKI++  R++ K+ +  +  ++T +  Y
Sbjct: 437 DRDRFVQ--------------NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 26/286 (9%)

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTAR-----ALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
           G   D F +SS+L   S +  + T +     AL + S D +    + +VD Y       +
Sbjct: 297 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACA 174
            R +F+ M +R    W+A++A YS+    KE L LF  M+E  G+  N + +  V+ AC 
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
             GA ++   +H +  +  L+++  +   ++DMYS+ G +  A+ +F  + ++D   WN 
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 476

Query: 235 MISGVAMNGDAKKSLELFDRM------VKSGT-----QPTETTFVAVLTTCTHAKMVRDG 283
           MI+G   +   + +L L  +M      V  G      +P   T + +L +C     +  G
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536

Query: 284 LNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEE 325
             +       Y ++  L     V    VD+ A+ G ++ + K  ++
Sbjct: 537 KEIH-----AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 113/222 (50%), Gaps = 8/222 (3%)

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           R+   W  ++ +  R +  +E +  +  M  +G+KP+     ++L A A L  +  G  +
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 186 HSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           H++  ++ +   +V +A  +V++Y KCG   +   VF+ IS ++  +WN++IS +     
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            + +LE F  M+    +P+  T V+V+T C++  M  +GL + + + A YG+  + E  +
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHA-YGLR-KGELNS 236

Query: 305 CVVDLLARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSA 344
            +++ L    M  +  K    K  +G  GG D   W  +LS+
Sbjct: 237 FIINTL--VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS 276


>gi|38345134|emb|CAE02724.2| OSJNBa0055H05.11 [Oryza sativa Japonica Group]
 gi|215697200|dbj|BAG91194.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 408

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 224/397 (56%), Gaps = 4/397 (1%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+      ++  C     L  FG  +H++++      D  V  +L+  Y+    M  A  
Sbjct: 8   PDQVIIATVLSTCAHTRNLR-FGKAIHSYMLVSDTLIDAQVSCALMNMYASCADMEMAEK 66

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           L+++  ++++V  TTMV GY K G  E A  +F  MP ++ VSWSA++A Y+  S   E 
Sbjct: 67  LYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAESSKPMEA 126

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L+LF  MQ  G+KP+E  ++SV++ACA++GA+ +   +HS+ + + + K + +  A++DM
Sbjct: 127 LNLFHDMQRSGVKPDEITMLSVISACANVGALEKARCIHSFVENHSMCKILPIGNALIDM 186

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           +SKCG +  AL VF  +  K+   W ++I+  AM+GD + +L LF+ M   G QP   TF
Sbjct: 187 FSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTLFENMKSEGIQPNGVTF 246

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           + +L  C HA +V +G  LF+ M   Y +EP  EHY C+VDLL RA ++ +A   I+   
Sbjct: 247 LGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMH 306

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
                 +  +WG+LL+ACR++G +E+G    +K+ E+        VL  NIY E G   +
Sbjct: 307 ---LRPNVVIWGSLLAACRMHGDLELGTFAAKKILELDPNHGGAQVLLSNIYAEYGNWND 363

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNR 424
             +VR ++   G  KK GCS +E+NG V +F  G  +
Sbjct: 364 VKEVRGVMEVQGTWKKKGCSWMELNGSVHQFAVGGEK 400



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 113/260 (43%), Gaps = 41/260 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +++ P  ++  + DM   G +P+  T   +I AC  +G LE     +H+ V   
Sbjct: 113 MIAGYAESSKPMEALNLFHDMQRSGVKPDEITMLSVISACANVGALEK-ARCIHSFVENH 171

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
              +   + ++L++ +S    +  A  +F+  P ++VVTWT+++      GD  +A    
Sbjct: 172 SMCKILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSA---- 227

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L+LF  M+  G++PN    + +L AC H G + 
Sbjct: 228 ---------------------------LTLFENMKSEGIQPNGVTFLGLLYACCHAGLVE 260

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
           +G L      ++Y +E        +VD+  +   +  A  + + +  + +   W ++++ 
Sbjct: 261 EGRLLFKIMVQQYRIEPMHEHYGCMVDLLGRAKLLGQAADLIQSMHLRPNVVIWGSLLAA 320

Query: 239 VAMNGD-------AKKSLEL 251
             M+GD       AKK LEL
Sbjct: 321 CRMHGDLELGTFAAKKILEL 340



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 31/154 (20%)

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY------------------------- 188
           M+   + P++  + +VL+ CAH   +  G  +HSY                         
Sbjct: 1   MKRSRVVPDQVIIATVLSTCAHTRNLRFGKAIHSYMLVSDTLIDAQVSCALMNMYASCAD 60

Query: 189 ----AKRYHL--EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
                K Y+   EK ++L+T +V  Y+K G V  A S+F G+  KD  +W+AMI+G A +
Sbjct: 61  MEMAEKLYNRVSEKEIVLSTTMVYGYAKNGKVEIAHSIFNGMPAKDVVSWSAMIAGYAES 120

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
               ++L LF  M +SG +P E T ++V++ C +
Sbjct: 121 SKPMEALNLFHDMQRSGVKPDEITMLSVISACAN 154


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 244/445 (54%), Gaps = 31/445 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q      ++  +  M+  G  PN  T   ++ AC  LG     GM +HA+ +K 
Sbjct: 334 VIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQ-GMEIHAYSLK- 391

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                    + LL   +L +  G          D D++ +  ++D Y K   F+ AR +F
Sbjct: 392 ---------NCLL---TLDNDFG--------GEDEDLMVYNALIDMYSKCRSFKAARSIF 431

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHL 176
           + +P  ERN V+W+ ++  +++  D  + L LF +M  +  G+ PN   +  +L ACAHL
Sbjct: 432 DDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHL 491

Query: 177 GAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            AI  G  +H+Y  R+H   +    +A  +++MYSKCG V +A  VF+ +S K A +W +
Sbjct: 492 AAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTS 551

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M++G  M+G   ++L++FD+M K+G  P + TF+ VL  C+H  MV  GL+ F++MSA Y
Sbjct: 552 MMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADY 611

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+ P+ EHYA  +DLLAR G +++A K +++         A VW ALLSACR++  +E+ 
Sbjct: 612 GLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMP---MEPTAVVWVALLSACRVHSNVELA 668

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL EM   +  ++ L  NIY  AG   +  ++R L+ ++G+KK+PGCS ++    
Sbjct: 669 EHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKG 728

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
              F  GD  H  + +IY ++ S +
Sbjct: 729 TASFFVGDRSHPLSPQIYALLESLI 753



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 172/332 (51%), Gaps = 23/332 (6%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VH + ++ G   D FV ++L++ Y+    M  A  +F+    +DVV+W  MV GY + G+
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGN 308

Query: 113 FENARELFEKMPERNA----VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           F+ A ELF+ M + N     V+W+A++A YS+     E L++FRQM   G  PN   ++S
Sbjct: 309 FKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIIS 368

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHL----------EKNVILATAVVDMYSKCGHVHSAL 218
           VL+ACA LGA +QG+ +H+Y+ +  L          ++++++  A++DMYSKC    +A 
Sbjct: 369 VLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 428

Query: 219 SVFEGI--SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTTC 274
           S+F+ I    ++   W  MI G A  GD+  +L+LF  M+    G  P   T   +L  C
Sbjct: 429 SIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMAC 488

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
            H   +R G  +   +   +  +      A C++++ ++ G V+ A    +     +   
Sbjct: 489 AHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDS----MSQK 544

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            A  W ++++   ++G+      ++ K+ + G
Sbjct: 545 SAISWTSMMTGYGMHGRGSEALDIFDKMRKAG 576



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 29/273 (10%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G   +++T P ++KAC  L P    G   H  +   GF  + F+ ++L+  YS   
Sbjct: 108 MLRAGTRLDHFTLPHVLKACGEL-PSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 166

Query: 81  KMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
            +  A  +FD+   R   DV++W ++V  + K  +   A +LF KM              
Sbjct: 167 SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKM-------------- 212

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                      +L    +    + +   +V++L AC  L A+ Q   VH  A R     +
Sbjct: 213 -----------TLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLD 261

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V +  A++D Y+KCG + +A+ VF  +  KD  +WNAM++G + +G+ K + ELF  M K
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
                   T+ AV+   +      + LN+F  M
Sbjct: 322 ENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQM 354



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 149/371 (40%), Gaps = 54/371 (14%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  Y   G  + A  + E++    AV W+ ++  + +       +++  +M   G +
Sbjct: 55  TGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTR 114

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
            +   L  VL AC  L +   G   H        E NV +  A+V MYS+CG +  A  +
Sbjct: 115 LDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMI 174

Query: 221 FEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRM-VKSGTQPTE-----TTFVAVL 271
           F+ I+ +   D  +WN+++S    + +A  +L+LF +M +    +PT       + V +L
Sbjct: 175 FDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 234

Query: 272 TTC-----------THAKMVRDG--LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
             C            H   +R+G  L++F   +              ++D  A+ G++E 
Sbjct: 235 PACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNA--------------LIDAYAKCGLMEN 280

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYN 377
           A K        +   D   W A+++     G  +    +++ + +  I  D  T      
Sbjct: 281 AVKVFNM----MEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIA 336

Query: 378 IYKEAGWDMEA-NKVRKLISETGMKKKPGC----SVIEVNGVVEEFLAGDNRHAQAGEIY 432
            Y + G   EA N  R++I    +   P C    SV+     +  F  G   HA     Y
Sbjct: 337 GYSQRGCSHEALNVFRQMIFSGSL---PNCVTIISVLSACASLGAFSQGMEIHA-----Y 388

Query: 433 RVIHSFLKMSN 443
            + +  L + N
Sbjct: 389 SLKNCLLTLDN 399



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L T VV  Y  CG    AL V E ++   A  WN +I      G    ++ +  RM+++G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           T+    T   VL  C      R G + F  +    G E  +     +V + +R G +EEA
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCG-SAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 320 EKFIEEKMGGLGGGDANVWGALLSA 344
               +E +   G  D   W +++SA
Sbjct: 172 SMIFDE-ITQRGIDDVISWNSIVSA 195


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/474 (32%), Positives = 246/474 (51%), Gaps = 76/474 (16%)

Query: 29  NNYTFPPLIKACVILG--PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           +++T+  LIKA    G  P+      VH+HVVK G  ED FV ++L++ YS       AR
Sbjct: 435 DSFTYSFLIKALSAAGVAPVR----AVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 490

Query: 87  ALFDKSPDRDV-------------------------------VTWTTMVDGYGKMGDFEN 115
            +FD+ P+RDV                               V+W T++DGY K G+ E 
Sbjct: 491 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 550

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFK------------------------------ 145
           A ELF++MPERN VSWS +++ Y +  D +                              
Sbjct: 551 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 610

Query: 146 -EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E   LF QM+E  ++ + + +VS+L ACA  G+++ G  +H Y ++ +L ++  +  A+
Sbjct: 611 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 670

Query: 205 VDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +DM+ KCG V+ A  VF+  +  KD+ +WN++I G AM+G   K+LELF +M + G  P 
Sbjct: 671 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 730

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             T + VL+ CTH   V +G   F NM   YG+ PQ+EHY C++DLL R G+++EA   I
Sbjct: 731 AVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLI 790

Query: 324 EEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
           +         + N  +WG+LLSACR++  +E       +L+++  ++   + +  NIY E
Sbjct: 791 KSMP-----WEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAE 845

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           AG   +  K R  +  TG +K  G S +E+N    EF  GD +H  + +I  ++
Sbjct: 846 AGQWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMV 899


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/472 (32%), Positives = 245/472 (51%), Gaps = 72/472 (15%)

Query: 29  NNYTFPPLIKACVILG--PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           +++T+  LIKA    G  P+      VH+HVVK G  ED FV ++L++ YS       AR
Sbjct: 128 DSFTYSFLIKALSAAGVAPVRA----VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 183

Query: 87  ALFDKSPDRDV-------------------------------VTWTTMVDGYGKMGDFEN 115
            +FD+ P+RDV                               V+W T++DGY K G+ E 
Sbjct: 184 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 243

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFK------------------------------ 145
           A ELF++MPERN VSWS +++ Y +  D +                              
Sbjct: 244 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 303

Query: 146 -EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E   LF QM+E  ++ + + +VS+L ACA  G+++ G  +H Y ++ +L ++  +  A+
Sbjct: 304 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNAL 363

Query: 205 VDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +DM+ KCG V+ A  VF+  +  KD+ +WN++I G AM+G   K+LELF +M + G  P 
Sbjct: 364 IDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPD 423

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             T + VL+ CTH   V +G   F NM   YG+ PQ+EHY C++DLL R G+++EA   I
Sbjct: 424 AVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLI 483

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +         +  +WG+LLSACR++  +E       +L+++  ++   + +  NIY EAG
Sbjct: 484 KSM---PWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAG 540

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              +  K R  +  TG +K  G S +E+N    EF  GD +H  + +I  ++
Sbjct: 541 QWSDMAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMV 592


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/448 (33%), Positives = 236/448 (52%), Gaps = 46/448 (10%)

Query: 1   MIRGYMQAN-------FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFV 53
           MI G++Q         +  L +F    M   G +P+++TF  +IK C  +   E +G  +
Sbjct: 285 MIAGFIQTEDIDKECAYEALKLFS--QMQRQGIKPSDFTFSSIIKICNHIEAFE-YGKQI 341

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HAH+ K     D F+ S+L+E YSL                               +G  
Sbjct: 342 HAHICKHNIQSDEFIGSTLIELYSL-------------------------------LGST 370

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           E+  + F   P+ + VSW+ ++A Y++   F+  L+LF ++   G KP+E  + ++L+AC
Sbjct: 371 EDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSAC 430

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A + A   G  VH YA +  +    I+  + + MY+K G++ SA   FE I N D  +W+
Sbjct: 431 ADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWS 490

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            MI   A +G AK ++ LF+ M   G  P + TF+ VLT C+H  +V +GL  +E+M   
Sbjct: 491 VMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKD 550

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIE 352
           Y ++  ++H  C+VDLL+RAG + +A+ FI       G GD  V W  LLS CRIY  I 
Sbjct: 551 YDMKINVKHCTCIVDLLSRAGRLLDAKNFILNS----GFGDHPVMWRTLLSGCRIYKDIV 606

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
            G  V  KL E+   + S++VL YNIY +AG D+ A K+R+L+ + G++K+PG S IEV 
Sbjct: 607 TGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVG 666

Query: 413 GVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
             V  F+ GD  H  +  IY+ +   L+
Sbjct: 667 NEVHSFVVGDISHPMSQIIYKKLEGMLE 694



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 161/376 (42%), Gaps = 50/376 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVI-LGPLENFGMFVHAHVVK 59
           +I GY +    +  +   + M   G   N +T    +K+C + L  + ++G  +H + VK
Sbjct: 182 LITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVK 241

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G                                D D+V  T ++D Y K G   +A +L
Sbjct: 242 QGL-------------------------------DLDIVVGTALLDMYAKTGYLGDAIQL 270

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFK-----EVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           F   P +N V ++A++A + +  D       E L LF QMQ  G+KP++    S++  C 
Sbjct: 271 FRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICN 330

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           H+ A   G  +H++  +++++ +  + + ++++YS  G     L  F      D  +W  
Sbjct: 331 HIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTT 390

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI+G A NG  + +L LF  ++ SG +P E     +L+ C      R G  +       Y
Sbjct: 391 MIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHG-----Y 445

Query: 295 GVEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
            V+  +   A V    + + A++G ++ A+   EE    +   D   W  ++ +   +G 
Sbjct: 446 AVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEE----IKNPDVVSWSVMICSNAQHGH 501

Query: 351 IEVGNRVWRKLAEMGI 366
            +    ++  +   GI
Sbjct: 502 AKDAINLFELMKSYGI 517



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 138/286 (48%), Gaps = 45/286 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           +I GY    F   ++  + +      + + +++  ++ AC   G +++F  G  +H   +
Sbjct: 81  LISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSAC---GQIKDFALGKVIHGLAI 137

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
             G G+  F+ + L++ Y    ++  AR LF+ S + D V+W +++ GY ++G +E    
Sbjct: 138 VCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARVGAYE---- 193

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL-- 176
                                      E+L L  +M   G++ N   L S L +C +L  
Sbjct: 194 ---------------------------EMLKLLVKMHHTGLRLNAFTLGSALKSC-YLNL 225

Query: 177 -GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
              ++ G  +H Y  +  L+ ++++ TA++DMY+K G++  A+ +F    N++   +NAM
Sbjct: 226 NNMVSYGKTLHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAM 285

Query: 236 ISGVAMNGDAKK-----SLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           I+G     D  K     +L+LF +M + G +P++ TF +++  C H
Sbjct: 286 IAGFIQTEDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNH 331



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 13/193 (6%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y K G+  NA++LF++M ER+ +S++ +++ Y  +  + + + LF + +   +K ++   
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
             VL+AC  +     G  +H  A    L + V L   ++DMY KC  +  A  +FE    
Sbjct: 114 AGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDE 173

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC------------ 274
            D  +WN++I+G A  G  ++ L+L  +M  +G +    T  + L +C            
Sbjct: 174 LDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGK 233

Query: 275 -THAKMVRDGLNL 286
             H   V+ GL+L
Sbjct: 234 TLHGYTVKQGLDL 246


>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 486

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 144/414 (34%), Positives = 233/414 (56%), Gaps = 10/414 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +  +  P  S   +  M      P+ ++F  L+K+     PL +    +H  V KF
Sbjct: 78  LIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLLKSRSFTMPLVHD---IHGAVFKF 134

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP----DRDVVTWTTMVDGYGKMGDFENA 116
           GF     V ++L+  Y++     +AR +F+ +     D D+V+W+ ++  + K G+ + A
Sbjct: 135 GFCRHLHVQNALIHLYAVGGVTISARKVFEDAVRVGLDVDIVSWSGLLVAHAKAGELDVA 194

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R++F+ MPER+ VSW+ +++AYS+     E L LF++M+  G+ P+E  ++SV++ACA L
Sbjct: 195 RKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEMRLAGVWPDEVTVLSVISACAEL 254

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G    G  VH + +       V L  +++DMY KCG +  A  VF+    K    WNAM+
Sbjct: 255 GDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAWQVFDRTKRKSLITWNAMM 314

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
              A +G A+ +  LF+ M+ SG  P   T +A+L    H   V +G+ LFE+M   YGV
Sbjct: 315 MVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKGFVDEGIRLFESMQRDYGV 374

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           EP++EHY  VVD+L R+G ++EA   +      +   D  +WGALL ACRI+G + +G R
Sbjct: 375 EPRIEHYGAVVDMLGRSGRLQEAYNLLTSM--PIPSNDV-IWGALLGACRIHGDVGMGER 431

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           V +KL E+   +   ++L  +IY  AG   EAN++R+ +  +G +K PGCS +E
Sbjct: 432 VIKKLLELKPDEGGYYILLRDIYVAAGRTAEANEMRQAMLASGARKNPGCSWVE 485



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/376 (21%), Positives = 150/376 (39%), Gaps = 60/376 (15%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD   A  +F++MP+     ++ ++ A+S  +        F +M+   + P+E     +L
Sbjct: 55  GDLSYAHNMFDQMPQPTTFFYNTLIRAHSHSTTPSFSSLFFNRMRRNSIAPDEFSFTFLL 114

Query: 171 TA--------------------CAHLGAITQGLWVHSY---------------AKRYHLE 195
            +                    C HL    Q   +H Y               A R  L+
Sbjct: 115 KSRSFTMPLVHDIHGAVFKFGFCRHLH--VQNALIHLYAVGGVTISARKVFEDAVRVGLD 172

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +++  + ++  ++K G +  A  VF+G+  +D  +W  M+S  +      ++L+LF  M
Sbjct: 173 VDIVSWSGLLVAHAKAGELDVARKVFDGMPERDVVSWTIMLSAYSKAKRPHETLDLFQEM 232

Query: 256 VKSGTQPTETTFVAVLTTCTH---AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
             +G  P E T ++V++ C     A+M R      E      G    +     ++D+  +
Sbjct: 233 RLAGVWPDEVTVLSVISACAELGDAEMGRMVHKFVEE----NGFGWMVALCNSLIDMYGK 288

Query: 313 AGMVEEA-EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
            G +EEA + F   K   L       W A++  C  +G  E   R++  +   G+     
Sbjct: 289 CGCLEEAWQVFDRTKRKSL-----ITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGV 343

Query: 372 HVLSYNI-YKEAGWDMEANKV-RKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
            +L+  + Y   G+  E  ++   +  + G++ +     IE  G V + L    R  +  
Sbjct: 344 TILALLVAYAHKGFVDEGIRLFESMQRDYGVEPR-----IEHYGAVVDMLG---RSGRLQ 395

Query: 430 EIYRVIHSFLKMSNLV 445
           E Y ++ S    SN V
Sbjct: 396 EAYNLLTSMPIPSNDV 411


>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
          Length = 493

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/416 (35%), Positives = 234/416 (56%), Gaps = 13/416 (3%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVVSSLLEFYSLVHKMGTAR 86
           P++ TFP  +               VHA  ++ G   +D  V +SL+  Y+     G AR
Sbjct: 60  PSHLTFP-FLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLAR 118

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD+ P  + V+W  ++DGY K  D   AR +F +MP+R+ VSWSA++    +  + +E
Sbjct: 119 RLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHRE 178

Query: 147 VLSLFRQMQEV-----GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
            L++F  M+       G++ N+  +VSVL ACAHLG + +G  +H Y + +    N+ LA
Sbjct: 179 ALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLA 238

Query: 202 TAVVDMYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           T++VDMY+KCG +  AL VF  +   + D   WNA+I G+A++G +++SL++F +M  +G
Sbjct: 239 TSLVDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAG 298

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             P E T++ +L+ C H  +V +    F ++ A   + P +EHYAC+VD+L RAG +EEA
Sbjct: 299 VVPDEITYLCLLSACVHGGLVDEAWRFFRSLEA-QRLRPHVEHYACLVDVLGRAGRLEEA 357

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
              ++           +V GALL+AC I+G +E+G  V R+L  +       ++   NIY
Sbjct: 358 YGVVKSMP---MKPSVSVLGALLNACHIHGWVELGEAVGRQLVHLQPDHDGRYIGLSNIY 414

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
             A    EA K RK++ E G+KK PG S I+V   +  F+A D  H  + EIY ++
Sbjct: 415 AVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGLCRFIAQDKTHPGSAEIYALL 470


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 239/445 (53%), Gaps = 12/445 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+ +     +   +  M+      + +TF  ++ AC  +G L   G  VH  +++ 
Sbjct: 265 MISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVG-LFAHGKSVHGQIIRL 323

Query: 61  GFGEDP----FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
                P     V ++L+ FYS    +  AR +FD    +DVV+W T++ GY +    + A
Sbjct: 324 QPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKA 383

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            E+FE+MP +N +SW  +++ Y      ++ L LF +M+   +KP +      + AC  L
Sbjct: 384 VEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGEL 443

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G  +H +  +   E +     A++ MY++CG V  A  +F  + N D+ +WNAMI
Sbjct: 444 GALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMI 503

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           S +  +G  +++LELFDRMV  G  P   +F+ VLT C H+ +V +G   FE+M   +G+
Sbjct: 504 SALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGI 563

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  +HY  ++DLL RAG + EA   I+           ++W A+LS CR  G +E+G  
Sbjct: 564 IPGEDHYTRLIDLLGRAGRIGEARDLIKTMP---FEPTPSIWEAILSGCRTSGDMELGAH 620

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              +L +M      T++L  N Y  AG  ++A +VRKL+ + G+KK+PGCS IE    V 
Sbjct: 621 AADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVH 680

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLKM 441
            FL GD +H +A E+Y+    FL+M
Sbjct: 681 VFLVGDTKHPEAHEVYK----FLEM 701



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 162/336 (48%), Gaps = 24/336 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMF----VHA 55
           +I  Y +A+    +V  +  +L  G   P++Y+F  L+ A    G L N  +     +H 
Sbjct: 127 VISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAG---GHLPNISVRHCAQLHC 183

Query: 56  HVVKFGFGEDPFVVSSLLEFYSLVHK---MGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
            V+K G G    V ++L+  Y           AR + D+ P++D +TWTTMV GY + GD
Sbjct: 184 SVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGD 243

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              AR +FE++  +  V W+A+++ Y       E   LFR+M    +  +E    SVL+A
Sbjct: 244 VGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSA 303

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVI------LATAVVDMYSKCGHVHSALSVFEGISN 226
           CA++G    G  VH    R  L+ N +      +  A+V  YSKCG++  A  +F+ ++ 
Sbjct: 304 CANVGLFAHGKSVHGQIIR--LQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTL 361

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           KD  +WN ++SG   +    K++E+F+ M        E +++ +++   H     D L L
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEM----PYKNELSWMVMVSGYVHGGFAEDALKL 417

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           F  M +   V+P    YA  +      G ++  ++ 
Sbjct: 418 FNKMRS-ENVKPCDYTYAGAIAACGELGALKHGKQL 452



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 48/269 (17%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP- 124
           P +   L+  Y+L   +  A  LF   P    V+ T++V  Y        A   F+ +P 
Sbjct: 59  PHLTLRLIHLYTLSRDLPAAATLFCADPCP--VSATSLVAAYAAADRLPAAVSFFDAVPP 116

Query: 125 -ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAIT-- 180
             R+ V  +A+++AY+R S     +++FR +   G ++P++    ++L+A  HL  I+  
Sbjct: 117 ARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVR 176

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKC----------------------------- 211
               +H    +      + +  A+V +Y KC                             
Sbjct: 177 HCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVV 236

Query: 212 -----GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
                G V +A SVFE +  K    WNAMISG   +G A ++ ELF RMV       E T
Sbjct: 237 GYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFT 296

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           F +VL+ C +       + LF +  +V+G
Sbjct: 297 FTSVLSACAN-------VGLFAHGKSVHG 318


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 235/433 (54%), Gaps = 36/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q     +++     M      PN  TF  +++ C     LE+ G  VH ++++ 
Sbjct: 220 LIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH-GKKVHRYIIQS 278

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G + +VV+SL+  Y                                K G  E AR+LF
Sbjct: 279 GYGRELWVVNSLITMYC-------------------------------KCGGLEEARKLF 307

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +P R+ V+W+A++  Y+++    E ++LFR+MQ+ G+KP++    SVLT+C+    + 
Sbjct: 308 SDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQ 367

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG-V 239
           +G  +H          +V L +A+V MY+KCG +  A  VF  +S ++  AW A+I+G  
Sbjct: 368 EGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCC 427

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G  +++LE FD+M K G +P + TF +VL+ CTH  +V +G   F +M   YG++P 
Sbjct: 428 AQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPM 487

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY+C VDLL RAG +EEAE  I   M  + G   +VWGALLSACR++  +E G R   
Sbjct: 488 VEHYSCFVDLLGRAGHLEEAENVI-LSMPFIPG--PSVWGALLSACRVHSDVERGERAAE 544

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            + ++   D   +V   +IY  AG   +A KVR+++ +  + K+PG S IEV+G V  F 
Sbjct: 545 NVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFH 604

Query: 420 AGDNRHAQAGEIY 432
             D  H ++ +IY
Sbjct: 605 VEDKSHPESEQIY 617



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 162/347 (46%), Gaps = 41/347 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGP-LENFGMFVHAHVVK 59
           MI  ++  N    +  CY  M   G +P+  TF  L+ A     P L   G  VH  +V+
Sbjct: 119 MIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNA--FTNPELLQLGQKVHMEIVE 176

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   +P V +SL+  Y+    +  AR +FD+ P+++VVTWT ++ GY + G  + A EL
Sbjct: 177 AGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALEL 236

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            E                                MQ+  + PN+    S+L  C    A+
Sbjct: 237 LET-------------------------------MQQAEVAPNKITFASILQGCTTPAAL 265

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VH Y  +    + + +  +++ MY KCG +  A  +F  + ++D   W AM++G 
Sbjct: 266 EHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGY 325

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM-SAVYGVEP 298
           A  G   +++ LF RM + G +P + TF +VLT+C+    +++G  + + +  A Y ++ 
Sbjct: 326 AQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDV 385

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
            L+  + +V + A+ G +++A     +    +   +   W A+++ C
Sbjct: 386 YLQ--SALVSMYAKCGSMDDASLVFNQ----MSERNVVAWTAIITGC 426



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 152/347 (43%), Gaps = 39/347 (11%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M+  G    +  F  L++ C  L  LE  G  VHA ++K G   + ++ ++LL  Y+   
Sbjct: 38  MILQGTRVYSDVFRGLLQECARLRSLEQ-GREVHAAILKSGIQPNRYLENTLLSMYA--- 93

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                       K G   +AR +F+ + +RN VSW+A++ A+  
Sbjct: 94  ----------------------------KCGSLTDARRVFDSIRDRNIVSWTAMIEAFVA 125

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
            +   E    +  M+  G KP++   VS+L A  +   +  G  VH       LE    +
Sbjct: 126 GNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV 185

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            T++V MY+KCG +  A  +F+ +  K+   W  +I+G A  G    +LEL + M ++  
Sbjct: 186 GTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEV 245

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            P + TF ++L  CT    +  G  +    + + YG E  L     ++ +  + G +EEA
Sbjct: 246 APNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRE--LWVVNSLITMYCKCGGLEEA 303

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            K   +    L   D   W A+++     G  +    ++R++ + GI
Sbjct: 304 RKLFSD----LPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 100/212 (47%), Gaps = 7/212 (3%)

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            KE L +   M   G +        +L  CA L ++ QG  VH+   +  ++ N  L   
Sbjct: 28  LKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 87

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++ MY+KCG +  A  VF+ I +++  +W AMI          ++ + ++ M  +G +P 
Sbjct: 88  LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPD 147

Query: 264 ETTFVAVLTTCTHAKMVRDGLNL-FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           + TFV++L   T+ ++++ G  +  E + A   +EP++     +V + A+ G + +A   
Sbjct: 148 KVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISKARVI 205

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            +     L   +   W  L++     G+++V 
Sbjct: 206 FDR----LPEKNVVTWTLLIAGYAQQGQVDVA 233


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/509 (31%), Positives = 256/509 (50%), Gaps = 73/509 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI+ Y++      S   Y D+  +  F P+N+TF  L K+C +   +   G+ +H+ + +
Sbjct: 48  MIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQ-GLQLHSQIWR 106

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTT----------------- 102
           FGF  D +V + +++ Y+   KMG AR  FD+ P R  V+WT                  
Sbjct: 107 FGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKL 166

Query: 103 ---------------MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF--- 144
                          M+DG+ K GD  +AR LF++M  +  ++W+ ++  Y  I D    
Sbjct: 167 FDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAA 226

Query: 145 ----------------------------KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAH 175
                                       +E ++LF++MQ    + P++  ++SVL A + 
Sbjct: 227 RKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISD 286

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
            GA++ G W H + +R  L+K V + TA++DMYSKCG +  A  +F+ +  K   +WNAM
Sbjct: 287 TGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAM 346

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G A+NG+A+ +L+LF  M+    +P E T +AV+T C H  +V +G   F  M  + G
Sbjct: 347 IHGYALNGNARAALDLFVTMMIE-EKPDEITMLAVITACNHGGLVEEGRKWFHVMREM-G 404

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +  ++EHY C+VDLL RAG ++EAE  I        G    +  + LSAC  Y  IE   
Sbjct: 405 LNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNG---IILSSFLSACGQYKDIERAE 461

Query: 356 RVWRKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           R+ +K  E+   +   +VL  N+Y  +  WD +   V+ ++ +   KK+ GCS+IE+N +
Sbjct: 462 RILKKAVELEPQNDGNYVLLRNLYAADKRWD-DFGMVKNVMRKNQAKKEVGCSLIEINYI 520

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443
           V EF++GD  H     I+ V+   L   N
Sbjct: 521 VSEFISGDTTHPHRRSIHLVLGDLLMHMN 549



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 31/175 (17%)

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +G AR LFD+ P RD                              ++   ++++ AY   
Sbjct: 26  IGYARKLFDQRPQRD------------------------------DSFLSNSMIKAYLET 55

Query: 142 SDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
             + +  +L+R + +E    P+     ++  +C+    + QGL +HS   R+    ++ +
Sbjct: 56  RQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYV 115

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           +T VVDMY+K G +  A + F+ + ++   +W A+ISG    G+   + +LFD+M
Sbjct: 116 STGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170


>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
           [Vitis vinifera]
          Length = 643

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 239/438 (54%), Gaps = 39/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR Y  ++ P+   + Y +M   G  PN  +   ++K+C+ +  L   G+ +HA +++ 
Sbjct: 139 MIRAYSMSHSPEQGFYLYREMRRRGVPPNPLSSSFVMKSCIRISSLMG-GLQIHARILRD 197

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  ++++L++ YS   K                               FE A ++F
Sbjct: 198 GHQSDNLLLTTLMDLYSCCDK-------------------------------FEEACKVF 226

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV--GMKPNESGLVSVLTACAHLGA 178
           +++P+ + VSW+ +++        ++ L +F  MQ    G +P++   + +L ACA+LGA
Sbjct: 227 DEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGA 286

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  VH+Y + +  +  + L  +++ MYS+CG +  A S+F+ +  ++  +W+AMISG
Sbjct: 287 LEFGERVHNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISG 346

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            AM+G  ++++E F++M + G  P + T   VL+ C+H  +V DGL  F+ MS V+G+EP
Sbjct: 347 FAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEP 406

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            + HY C+VDLL RAG++++A + I   M  +   D+ +W  LL ACRI+    +G RV 
Sbjct: 407 NIHHYGCMVDLLGRAGLLDQAYQLI---MSMVIKPDSTLWRTLLGACRIHRHATLGERVI 463

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             L E+   +   +VL  NIY   G WD +   +RK + E G++  PGCS IE+ G V E
Sbjct: 464 GHLIELKAQEAGDYVLLLNIYSSVGNWD-KVTDLRKFMKEKGIQTSPGCSTIELKGKVHE 522

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F+  D  H +  EIY ++
Sbjct: 523 FVVDDILHPRTDEIYEML 540



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 151/334 (45%), Gaps = 40/334 (11%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           LIK+C     L    + +HAH+++    ++ F+    L+F S        RA    SP R
Sbjct: 74  LIKSCSKKTHL----LQIHAHIIRTSLIQNHFIS---LQFLS--------RAAL--SPSR 116

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D+        GY        + ++F ++ + +   ++ ++ AYS     ++   L+R+M+
Sbjct: 117 DM--------GY--------SSQVFSQIMKPSGSQYNVMIRAYSMSHSPEQGFYLYREMR 160

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G+ PN      V+ +C  + ++  GL +H+   R   + + +L T ++D+YS C    
Sbjct: 161 RRGVPPNPLSSSFVMKSCIRISSLMGGLQIHARILRDGHQSDNLLLTTLMDLYSCCDKFE 220

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTT 273
            A  VF+ I   D  +WN +IS    N   + +L +FD M  +  G +P + T + +L  
Sbjct: 221 EACKVFDEIPQWDTVSWNVLISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQA 280

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C +   +  G  +  N    +G +  L     ++ + +R G +E+A    +     +   
Sbjct: 281 CANLGALEFGERV-HNYIEEHGYDGALNLCNSLITMYSRCGRLEKAYSIFKR----MDER 335

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           +   W A++S   ++G        + ++ ++G++
Sbjct: 336 NVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVS 369


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/438 (34%), Positives = 247/438 (56%), Gaps = 39/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +      +V  + +M++ GF+PN  +   ++ AC  LG L            K 
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL------------KL 246

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + FVV + +   +L + MG+A                 ++  YGK GD  +AR +F
Sbjct: 247 GTWVEEFVVENKM---TLNYFMGSA-----------------LIHMYGKCGDLVSARRIF 286

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M +++ V+W+A++  Y++    +E + LF+ M+     P++  L+ +L+ACA +GA+ 
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALD 346

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V  YA     + +V + TA+VDMY+KCG + +A  VF G+ NK+  +WNAMIS +A
Sbjct: 347 LGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALA 406

Query: 241 MNGDAKKSLELFDRMVKSG--TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            +G A+++L LF  M+  G    P + TFV VL+ C HA +V +G  LF  MS+ +G+ P
Sbjct: 407 FHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVP 466

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           ++EHY+C+VDL +RAG +EEA  F+   M      D  + GALL AC+    I++  RV 
Sbjct: 467 KIEHYSCMVDLFSRAGHLEEAWDFV---MTMPEKPDEVILGALLGACQKRKNIDISERVM 523

Query: 359 RKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           + L E+  ++   +V+S  +Y     WD ++ ++R L+ + G+ K PGCS I++N  + E
Sbjct: 524 KLLLELEPSNSGNYVISSKLYANLRRWD-DSARMRMLMKQKGVSKTPGCSWIDINSQLHE 582

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F AGD  H +  EI++++
Sbjct: 583 FHAGDVLHQEWIEIHQIL 600



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 38/368 (10%)

Query: 1   MIRGYMQA-NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIRG   A N   L++  Y  M  +G +PNN T+P L  AC  L  +EN G   H  V++
Sbjct: 97  MIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVEN-GRMGHCSVIR 155

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G  ED  V  SL+  Y+   KMG AR +FD+   +D+V+W +M+ GY KM         
Sbjct: 156 RGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM--------- 206

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                 R+A                 E + LFR+M E G +PNE  LVSVL AC  LG +
Sbjct: 207 ------RHA----------------GEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL 244

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WV  +     +  N  + +A++ MY KCG + SA  +F+ +  KD   WNAMI+G 
Sbjct: 245 KLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGY 304

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A NG ++++++LF  M  S T P + T + +L+ C     +  G  + E  ++  G +  
Sbjct: 305 AQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERGFQDD 363

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +     +VD+ A+ G ++ A +       G+   +   W A++SA   +G+ +    +++
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRVFY----GMPNKNEVSWNAMISALAFHGQAQEALALFK 419

Query: 360 KLAEMGIT 367
            +   G T
Sbjct: 420 SMMNEGGT 427



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 31/290 (10%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV-LSLFRQMQEVGMKPNESGLVS 168
           + DF  A   F  + +    S++ ++   S   +   + L  + +M+ +G+KPN      
Sbjct: 73  LKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPF 132

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +  AC++L A+  G   H    R  L+++  ++ +++ MY++CG +  A  VF+ IS KD
Sbjct: 133 LFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKD 192

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             +WN+MISG +    A +++ LF  M+++G QP E + V+VL  C     ++ G  + E
Sbjct: 193 LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEE 252

Query: 289 -----NMSAVYGVEPQLEH-YACVVDLL------------------------ARAGMVEE 318
                 M+  Y +   L H Y    DL+                        A+ GM EE
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           A K  ++        D      +LSAC   G +++G +V    +E G  D
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQD 362


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/428 (33%), Positives = 239/428 (55%), Gaps = 6/428 (1%)

Query: 7   QANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED 65
           QAN P L++  +  M    G +P++Y F  L+KAC ILG ++  G  VHA  +     +D
Sbjct: 81  QANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ-GKQVHATFIVSPVSDD 139

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
             V SSL++ Y+        R +FD    ++ ++WT M+ GY + G   +A +LF+KMP 
Sbjct: 140 DVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPV 199

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS-VLTACAHLGAITQGLW 184
           +N +SW+A+++   +  ++ +   LF +M+  G+   +  ++S ++ A A+L  +  G  
Sbjct: 200 KNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQ 259

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           +H        E ++ ++ A+VDMY+KC  V +A  +F  +  +D  +W ++I G A +G 
Sbjct: 260 IHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGL 319

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
           A+++L L++RM+ +G +P E TFV ++  C+H  +V  G   F +M   YG+ P L+HY 
Sbjct: 320 AEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYT 379

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           C++DLL+R+G +EEAE  I+         D   W ALLSAC  +    +G RV   L  +
Sbjct: 380 CLLDLLSRSGHLEEAENLIKAMP---FKPDEATWAALLSACNHHRNTLIGIRVADHLLSL 436

Query: 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNR 424
              D ST++L  NIY  A      +KVR+L++   +KK+PG S I +    + FLAG+  
Sbjct: 437 KPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQVFLAGETS 496

Query: 425 HAQAGEIY 432
           H    EI+
Sbjct: 497 HPAKEEIF 504



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGM 159
             +++ YGK G  ++A  LF ++P R+ +SW++I+ A ++ +     LS+F  M ++ G+
Sbjct: 42  NNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGL 101

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
           +P+      ++ ACA LGA+ QG  VH+      +  + ++ +++VDMY+KCG       
Sbjct: 102 QPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRV 161

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           VF+ IS+K++ +W AMISG A +G    +++LF +M
Sbjct: 162 VFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKM 197



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 103/233 (44%), Gaps = 24/233 (10%)

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           S LV  L ACA   +   G  +H +  +  +++   L+  +++MY KCG +  AL++F  
Sbjct: 4   SHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQ 63

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRD 282
           + ++D  +W ++++          +L +F  M K  G QP    F  ++  C     ++ 
Sbjct: 64  LPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQ 123

Query: 283 GLNLFENMSAVYGVEPQLEH---YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
           G    + + A + V P  +     + +VD+ A+ G+ +      +     +   ++  W 
Sbjct: 124 G----KQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFD----SISSKNSISWT 175

Query: 340 ALLS----------ACRIYGKIEVGNRV-WRKLAEMGITDFSTHVLSYNIYKE 381
           A++S          A +++ K+ V N + W  L   G+      V S+ ++ E
Sbjct: 176 AMISGYAQSGRKLDAIQLFQKMPVKNLLSWTALIS-GLVQSGNWVDSFYLFME 227


>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 581

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 233/436 (53%), Gaps = 36/436 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+ A  P  ++  +  M       ++ T    + AC     +   G   HA +V  
Sbjct: 167 IIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACA-RTCMMKVGKLCHALLVTN 225

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + ++ SSL+  Y+                               K G  E+AR +F
Sbjct: 226 GFEINCYMGSSLISMYA-------------------------------KCGQVEDARRIF 254

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP+RNAV W+++++ Y+++   KE + LFR MQ  G+K +++ + +V+++C  +GA+ 
Sbjct: 255 DGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALD 314

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G +VH+Y   + L K++ +  +++DMYSKCG +  A  +F G+  +D  +W  +I G A
Sbjct: 315 LGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWTVIIMGFA 374

Query: 241 MNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            NG + ++L+LF +M +  G  P E TF+ VLT+C+H  +V  G   F  MS++YG+ P+
Sbjct: 375 ANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPR 434

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL RA ++ EAE+FI+E        DA +W +LL ACR  G++ +   V  
Sbjct: 435 IEHYGCMVDLLGRAKLLAEAEQFIKEMP---IAPDAVMWRSLLFACRTCGEVGLAEYVAE 491

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           ++  +        VL   +Y      ++ANKVR  I      K+PGCS IEV+G V EF 
Sbjct: 492 RIQVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFF 551

Query: 420 AGDNRHAQAGEIYRVI 435
           AGD  H +   IY  +
Sbjct: 552 AGDESHFETEAIYSTL 567



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 32/296 (10%)

Query: 25  GFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           G+ P +NY+    +     + P    G  +HA  VK G   D FV+++L+  YS      
Sbjct: 87  GYMPIDNYSLSAALSTAARM-PSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPS 145

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           TAR++ D +P                                 + VSW+ I+A Y     
Sbjct: 146 TARSVLDSAPKG-----------------------------ASDTVSWNTIIAGYIHAGL 176

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             + L  F QM +  +  ++  L++ L ACA    +  G   H+       E N  + ++
Sbjct: 177 PNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSS 236

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++ MY+KCG V  A  +F+G+ +++A  W +MISG    G +K++++LF  M  +G +  
Sbjct: 237 LISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVD 296

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           + T   V+++C     +  G         ++G+   +     ++D+ ++ G +++A
Sbjct: 297 DATISTVVSSCGQMGALDLG-RYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKA 351



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 7/210 (3%)

Query: 159 MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218
           M  +   L + L+  A + ++  G  +H+ + +  L  +  +   +++MYS C +  +A 
Sbjct: 89  MPIDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTAR 148

Query: 219 SVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           SV +       D  +WN +I+G    G   K+L+ F +M K      + T +  L  C  
Sbjct: 149 SVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACAR 208

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
             M++ G  L   +    G E      + ++ + A+ G VE+A +  +    G+   +A 
Sbjct: 209 TCMMKVG-KLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFD----GMPDRNAV 263

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            W +++S     G+ +   +++R +   G+
Sbjct: 264 CWTSMISGYTQLGQSKEAIKLFRDMQIAGV 293


>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
 gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
          Length = 607

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 151/416 (36%), Positives = 232/416 (55%), Gaps = 42/416 (10%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+N+TFP ++KAC  L  L   G   HAH++K GF  D ++ +SL+ FY+          
Sbjct: 124 PDNHTFPFVLKACAYLFALFE-GKQAHAHLLKLGFQSDVYINNSLIHFYA---------- 172

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
                                  G  E+A+ +F+KMP+R+ VSW+A++ A+    +F+  
Sbjct: 173 ---------------------SCGSLESAKNVFDKMPQRSLVSWNAMIDAFVLFGEFETA 211

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH----LEKNVILATA 203
           L LF Q Q+   +P+   + SV+ ACA L A++ G+W H++  R         +V++  +
Sbjct: 212 LQLFVQFQQQFFEPDGYTIQSVINACAGLCALSLGMWAHAFLLRNCGVSVARDHVLVNNS 271

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQP 262
           ++DMY KCG +  A  +FEG+   D  +WN+MI G AM+G  + +LE F+RM++ S   P
Sbjct: 272 LLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVP 331

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
              TFV VL+ C H  MV +G   F+ M   Y +EPQLEHY C+VD+LARAG+++EA + 
Sbjct: 332 NSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALEL 391

Query: 323 IEEKMGGLGGGDANVWGALL-SACRIYGKIEVGNRVWRKLAEMGITDFS-THVLSYNIYK 380
           +          D  +W +LL S C+    +E+   + R++ E    D S  +VL   +Y 
Sbjct: 392 VASMP---MKPDVVIWRSLLDSCCKKNASVELSENIARQILESEEADSSGVYVLLSRVYA 448

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
            A    +   VRKL++  G+ K+PGCS+IEV+GV  EF AGD  H Q  EIY+V++
Sbjct: 449 SASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSHPQTKEIYQVLN 504



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 122/266 (45%), Gaps = 11/266 (4%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF---KEVLSLFRQM-QEVGMKPN 162
           +  + D   A  +F+++   N+  W+ ++ A ++       +E + L+  M Q     P+
Sbjct: 66  FSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSVHLKREAILLYNTMLQRSSPFPD 125

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
                 VL ACA+L A+ +G   H++  +   + +V +  +++  Y+ CG + SA +VF+
Sbjct: 126 NHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSLESAKNVFD 185

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +  +   +WNAMI    + G+ + +L+LF +  +   +P   T  +V+  C     +  
Sbjct: 186 KMPQRSLVSWNAMIDAFVLFGEFETALQLFVQFQQQFFEPDGYTIQSVINACAGLCALSL 245

Query: 283 GLNLFENMSAVYGVEPQLEHYAC---VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
           G+     +    GV    +H      ++D+  + G ++ A +  E    G+   D   W 
Sbjct: 246 GMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFE----GMQKHDVTSWN 301

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMG 365
           +++    ++GK E+    + ++  + 
Sbjct: 302 SMILGFAMHGKGELALECFERMIRIS 327



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 42/263 (15%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVK---FGFGEDPFVV-SSLLEFYSLVHKM 82
           EP+ YT   +I AC  L  L + GM+ HA +++        D  +V +SLL+ Y     +
Sbjct: 224 EPDGYTIQSVINACAGLCAL-SLGMWAHAFLLRNCGVSVARDHVLVNNSLLDMYCKCGSL 282

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             A  +F+     DV +W +M+ G+   G  E A E FE+M                RIS
Sbjct: 283 DIATQIFEGMQKHDVTSWNSMILGFAMHGKGELALECFERM---------------IRIS 327

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEKNVILA 201
            F                PN    V VL+AC H   + +G  +       Y +E  +   
Sbjct: 328 RF---------------VPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHY 372

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKS-- 258
             +VD+ ++ G +  AL +   +  K D   W +++           S+EL + + +   
Sbjct: 373 GCLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCC---KKNASVELSENIARQIL 429

Query: 259 GTQPTETTFVAVLTTCTHAKMVR 281
            ++  +++ V VL +  +A   R
Sbjct: 430 ESEEADSSGVYVLLSRVYASASR 452


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 156/432 (36%), Positives = 233/432 (53%), Gaps = 37/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q+   K +    L M   GF+PN  T+  ++ AC   G L+ +   VH H +  
Sbjct: 201 MIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK-WVKRVHRHALDA 259

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                + DV   T +V  Y K G  ++AR +F
Sbjct: 260 GL-------------------------------ELDVRVGTALVQMYAKSGSIDDARVVF 288

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M  R+ VSW+ ++ A++      E   LF QMQ  G KP+    +S+L ACA  GA+ 
Sbjct: 289 DRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE 348

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
               +H +A    LE +V + TA+V MYSK G +  A  VF+ +  ++  +WNAMISG+A
Sbjct: 349 WVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLA 408

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  + +LE+F RM   G +P   TFVAVL+ C+HA +V +G + +  M+ VYG+EP +
Sbjct: 409 QHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDV 468

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            H  C+VDLL RAG + EA+ FI+         D   WGALL +CR YG +E+G  V ++
Sbjct: 469 SHCNCMVDLLGRAGRLMEAKLFIDNMA---VDPDEATWGALLGSCRTYGNVELGELVAKE 525

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
             ++   + +T+VL  NIY EAG WDM  + VR ++ E G++K+PG S IEV+  + +FL
Sbjct: 526 RLKLDPKNAATYVLLSNIYAEAGKWDM-VSWVRTMMRERGIRKEPGRSWIEVDNKIHDFL 584

Query: 420 AGDNRHAQAGEI 431
             D+ H +  EI
Sbjct: 585 VADSSHPECKEI 596



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 170/366 (46%), Gaps = 37/366 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++    + ++  + +M   G +PN  T+  ++KAC  L  L+ +G  VHA +   
Sbjct: 100 MIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK-WGKEVHACIRHG 158

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V ++LL  Y                               GK G    AR +F
Sbjct: 159 GLESDVRVGTALLRMY-------------------------------GKCGSINEARRIF 187

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + +   + +SW+ ++ AY++  + KE   L  QM++ G KPN    VS+L ACA  GA+ 
Sbjct: 188 DNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK 247

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
               VH +A    LE +V + TA+V MY+K G +  A  VF+ +  +D  +WN MI   A
Sbjct: 248 WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFA 307

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   ++ +LF +M   G +P    F+++L  C  A  + + +      +   G+E  +
Sbjct: 308 EHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGAL-EWVKKIHRHALDSGLEVDV 366

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                +V + +++G +++A    +     +   +   W A++S    +G  +    V+R+
Sbjct: 367 RVGTALVHMYSKSGSIDDARVVFDR----MKVRNVVSWNAMISGLAQHGLGQDALEVFRR 422

Query: 361 LAEMGI 366
           +   G+
Sbjct: 423 MTAHGV 428



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 115/214 (53%), Gaps = 1/214 (0%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y + G  + AR +F+ + +++  SW+A++A Y      ++ + LFR+M   G++PN    
Sbjct: 73  YIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTY 132

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           + +L ACA L A+  G  VH+  +   LE +V + TA++ MY KCG ++ A  +F+ + N
Sbjct: 133 MIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMN 192

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            D  +W  MI   A +G+ K++  L  +M + G +P   T+V++L  C     ++  +  
Sbjct: 193 HDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK-WVKR 251

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
               +   G+E  +     +V + A++G +++A 
Sbjct: 252 VHRHALDAGLELDVRVGTALVQMYAKSGSIDDAR 285



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/230 (21%), Positives = 99/230 (43%), Gaps = 9/230 (3%)

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           ++ L  ++Q  G+  +    V VL  C     +     VH    +  +E+N  +   ++ 
Sbjct: 13  IVVLMNRLQR-GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLH 71

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           +Y +CG +  A  VF+ +  K   +WNAMI+G   +  A+ ++ LF  M   G QP   T
Sbjct: 72  VYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGT 131

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
           ++ +L  C     ++ G  +   +    G+E  +     ++ +  + G + EA +  +  
Sbjct: 132 YMIILKACASLSALKWGKEVHACIRH-GGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           M      D   W  ++ A   Y +   G   +R + +M    F  + ++Y
Sbjct: 191 M----NHDIISWTVMIGA---YAQSGNGKEAYRLMLQMEQEGFKPNAITY 233


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/427 (36%), Positives = 229/427 (53%), Gaps = 35/427 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q  + K  +  + +M+  G +PN  T   ++ AC  L  L N G  +H + +K 
Sbjct: 200 VIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFL-NLGKLIHGYGIKL 258

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                D DV     ++  YGK G+ E AR LF
Sbjct: 259 GV-------------------------------DPDVSLTNALIALYGKCGNVETARSLF 287

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M  +N VSW+A++AAY + +     + LFR+MQ   +  +   +VSV++ACA LGA+ 
Sbjct: 288 DGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALN 347

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+H   KR  LE NV +  A++DMY+KCG++  A  VFE +  +   +W +MI   A
Sbjct: 348 TGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACA 407

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  + +L+LF RM   G +P   TF AV T C H+ +V +G   FE+M   Y + P +
Sbjct: 408 SHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGV 467

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EH AC+VDLL RAG + EA +FI +KM      D +VWGALL +CRI+  +E+   V  K
Sbjct: 468 EHCACMVDLLGRAGSLMEAYEFI-DKMP--VEPDVSVWGALLGSCRIHSNLELAELVAEK 524

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L  +     + +VL  NIY EAG   +A ++RKL+ E  +KK PG S++EVN     FL+
Sbjct: 525 LFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEVNRRFHTFLS 584

Query: 421 GDNRHAQ 427
           G    + 
Sbjct: 585 GSRSQSS 591



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 178/366 (48%), Gaps = 37/366 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  A   + ++  Y +M   G  P+NYTFP ++++C +L  L   G  VH ++VK 
Sbjct: 99  LIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALRE-GKEVHCNIVKH 157

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV SSL+                                 Y + G+      +F
Sbjct: 158 GFDSDVFVQSSLVAM-------------------------------YSQSGETLGMELVF 186

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M  RN VSW+A++A Y +   FKE L +FR+M   G +PN   LVSVL ACA L  + 
Sbjct: 187 GEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLN 246

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y  +  ++ +V L  A++ +Y KCG+V +A S+F+G+  ++  +WNAMI+   
Sbjct: 247 LGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYE 306

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            N     +++LF RM          T V+V++ C     +  G  + E +    G+E  +
Sbjct: 307 QNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHE-LVKRKGLEINV 365

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
                ++D+ A+ G ++ A +  E     L       W +++ AC  +G  E   +++ +
Sbjct: 366 SITNALIDMYAKCGNIDLAREVFER----LPCRSVVSWTSMIGACASHGHGEDALKLFSR 421

Query: 361 LAEMGI 366
           + + G+
Sbjct: 422 MKDEGV 427



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 139/325 (42%), Gaps = 41/325 (12%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL-EFYSLV 79
           + D     ++ +F  L+  C  L  L      +HA VV  G G++  + + L+     L 
Sbjct: 20  LFDFRTNYHSRSFNYLLNCCSSLPDLSR----IHALVVTNGCGQNLLLSTKLIITACCLA 75

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
             M  AR +FD+ P RDV  W T++ GY   G  E                         
Sbjct: 76  PTMDYARKMFDQMPKRDVFLWNTLIRGYADAGPCE------------------------- 110

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
                 E L+L+  M   G+ P+      V+ +CA L A+ +G  VH    ++  + +V 
Sbjct: 111 ------EALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVF 164

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           + +++V MYS+ G       VF  +  ++  +W A+I+G   N   K+ L +F  MV SG
Sbjct: 165 VQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSG 224

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           TQP   T V+VL  C   + +  G  L        GV+P +     ++ L  + G VE A
Sbjct: 225 TQPNAVTLVSVLPACAGLEFLNLG-KLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETA 283

Query: 320 EKFIEEKMGGLGGGDANVWGALLSA 344
               +    G+   +   W A+++A
Sbjct: 284 RSLFD----GMVVQNLVSWNAMIAA 304


>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
          Length = 950

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/414 (34%), Positives = 229/414 (55%), Gaps = 11/414 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++  + Q    K +V  Y  ML  G  PN   F  ++ AC  L  L + G  +H   +K 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS-GRKIHNQTLKM 407

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               + FV S+L++ Y    ++  A+ +F   P +++V W +++ GY        A ELF
Sbjct: 408 ACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELF 467

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMP RN  SW++I++ Y++   F + L  F  M   G  P E    SVL ACA L ++ 
Sbjct: 468 KKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLE 527

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH+   +  +++++ + TA+ DMY+K G + S+  VF  +  ++  AW AMI G+A
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A++S+ LF+ M+ +G  P E TF+A+L  C+H+ +V   ++ FE M A  G+ P+ 
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKA 646

Query: 301 EHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +HY C+VD+LARAG + EAE     IE K       +AN W ALLSAC IY   E+G R 
Sbjct: 647 KHYTCMVDVLARAGHLAEAEDLLLKIESK------SEANSWAALLSACNIYRNKEMGERA 700

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
            ++L E+   + + +VL  N+Y   G   +A ++R L+    +KK  GCS +++
Sbjct: 701 AKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQI 754



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 199/437 (45%), Gaps = 69/437 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG----PLENFGMFVHAH 56
           MI G++    PK ++  + +ML  G  PN  T   +IKAC+  G     +   G+ + ++
Sbjct: 216 MIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSN 275

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           ++    G    V +SL+  Y        AR +FD+   RDVV+WT ++D Y ++GD E A
Sbjct: 276 LLDKNLG----VRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R + ++MPERN VSW  ++A + +  + KE +SL+ QM   G +PN S   SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +  G  +H+   +     NV +++A++DMY KC  +  A  +F  +  K+   WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 237 SGVAMNGDAKKSLELFDR-------------------------------MVKSGTQPTET 265
           SG + N    ++ ELF +                               M+ SG  P E 
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 266 TFVAVLTTC-----------THAKMVRDGL--NLF--ENMSAVYGVEPQLEH-------- 302
           TF +VL  C            HAK+++ G+  ++F    +S +Y     L+         
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEM 571

Query: 303 -------YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
                  +  ++  LA  G  EE+    E+ +      +   + A+L AC   G +E   
Sbjct: 572 PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM 631

Query: 356 RVWRKLAEMGITDFSTH 372
             +  +   GI+  + H
Sbjct: 632 HYFEMMQACGISPKAKH 648



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 153/343 (44%), Gaps = 37/343 (10%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           PF    ++  +     + +AR LFD  P+R VV++TTMVD   K G   +A EL+ + P 
Sbjct: 148 PFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
            +   ++A++A +      K+ L +F +M   G+ PNE  LVSV+ AC   G     + +
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 186 HSYAKRYH-LEKN-------------------------------VILATAVVDMYSKCGH 213
              A + + L+KN                               V+  TA++D+Y++ G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  V + +  ++  +W  +++     G+AK+++ L+ +M+  G +P  + F +VL  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C   + +R G  +  N +        +   + ++D+  +   + +A+         L   
Sbjct: 388 CASLQDLRSGRKI-HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY----SLPQK 442

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +   W +L+S      K+     +++K+    +  +++ +  Y
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGY 485


>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
          Length = 888

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/414 (34%), Positives = 229/414 (55%), Gaps = 11/414 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++  + Q    K +V  Y  ML  G  PN   F  ++ AC  L  L + G  +H   +K 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS-GRKIHNQTLKM 407

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               + FV S+L++ Y    ++  A+ +F   P +++V W +++ GY        A ELF
Sbjct: 408 ACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELF 467

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMP RN  SW++I++ Y++   F + L  F  M   G  P E    SVL ACA L ++ 
Sbjct: 468 KKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLE 527

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH+   +  +++++ + TA+ DMY+K G + S+  VF  +  ++  AW AMI G+A
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A++S+ LF+ M+ +G  P E TF+A+L  C+H+ +V   ++ FE M A  G+ P+ 
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKA 646

Query: 301 EHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +HY C+VD+LARAG + EAE     IE K       +AN W ALLSAC IY   E+G R 
Sbjct: 647 KHYTCMVDVLARAGHLAEAEDLLLKIESK------SEANSWAALLSACNIYRNKEMGERA 700

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
            ++L E+   + + +VL  N+Y   G   +A ++R L+    +KK  GCS +++
Sbjct: 701 AKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQI 754



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 199/437 (45%), Gaps = 69/437 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG----PLENFGMFVHAH 56
           MI G++    PK ++  + +ML  G  PN  T   +IKAC+  G     +   G+ + ++
Sbjct: 216 MIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSN 275

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           ++    G    V +SL+  Y        AR +FD+   RDVV+WT ++D Y ++GD E A
Sbjct: 276 LLDKNLG----VRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R + ++MPERN VSW  ++A + +  + KE +SL+ QM   G +PN S   SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +  G  +H+   +     NV +++A++DMY KC  +  A  +F  +  K+   WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 237 SGVAMNGDAKKSLELFDR-------------------------------MVKSGTQPTET 265
           SG + N    ++ ELF +                               M+ SG  P E 
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 266 TFVAVLTTCT-----------HAKMVRDGL--NLF--ENMSAVYGVEPQLEH-------- 302
           TF +VL  C            HAK+++ G+  ++F    +S +Y     L+         
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEM 571

Query: 303 -------YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
                  +  ++  LA  G  EE+    E+ +      +   + A+L AC   G +E   
Sbjct: 572 PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM 631

Query: 356 RVWRKLAEMGITDFSTH 372
             +  +   GI+  + H
Sbjct: 632 HYFEMMQACGISPKAKH 648



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 153/343 (44%), Gaps = 37/343 (10%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           PF    ++  +     + +AR LFD  P+R VV++TTMVD   K G   +A EL+ + P 
Sbjct: 148 PFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
            +   ++A++A +      K+ L +F +M   G+ PNE  LVSV+ AC   G     + +
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 186 HSYAKRYH-LEKN-------------------------------VILATAVVDMYSKCGH 213
              A + + L+KN                               V+  TA++D+Y++ G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  V + +  ++  +W  +++     G+AK+++ L+ +M+  G +P  + F +VL  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C   + +R G  +  N +        +   + ++D+  +   + +A+         L   
Sbjct: 388 CASLQDLRSGRKI-HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY----SLPQK 442

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +   W +L+S      K+     +++K+    +  +++ +  Y
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGY 485


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 237/433 (54%), Gaps = 41/433 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++A     +V  +L M     EPN  TF  ++ AC   G L + G  +H    K 
Sbjct: 106 VISGYVRAGLFDEAVGLFLRM---DVEPNAATFVSVLVACGRKGYL-SVGKGIHGLSFKS 161

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG    V ++L++ Y                                K G    A+++F
Sbjct: 162 AFGVGLEVSNALMDMYV-------------------------------KCGCLPGAKQVF 190

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++ E++ VSW++I++   + +  KE L LF+ MQ  G++P+   L SVL+ACA LGA+ 
Sbjct: 191 DELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALD 250

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH +  R  ++ ++ + TA+VDMY+KCG +  ++ +F G+ +K+   WNA+++G+A
Sbjct: 251 YGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLA 310

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA-VYGVEPQ 299
           M+G A K LELF+ MV+ G +P E TF+A+LT C H  +V +G   F  M    Y + P+
Sbjct: 311 MHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPR 370

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           LEHY C+VDLL RA +++EA   +E         D  + GALLSAC+  G  E+   +  
Sbjct: 371 LEHYGCMVDLLCRARLLDEA---LELTKAMPMSPDVRIMGALLSACKENGNTELPQEILD 427

Query: 360 KLAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           +  E+   D   +VL  NI+     WD +  ++R+L+ E G+KK PG +VIE++G   EF
Sbjct: 428 RFVELDSHDSGVYVLLSNIHAINQRWD-DVTRIRRLMKEKGIKKPPGSTVIELDGKAHEF 486

Query: 419 LAGDNRHAQAGEI 431
           + GD RH Q   I
Sbjct: 487 IVGDTRHPQDKRI 499



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 169/350 (48%), Gaps = 42/350 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVK 59
           ++ GY   + PK +   Y  ++  GF P+ +TFP ++K+C   +G  E  G  VH  ++K
Sbjct: 5   LVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGE--GRQVHGVIIK 62

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF  + +V +SL+ FYS+  + G A  +FD+                            
Sbjct: 63  MGFVCNIYVENSLVHFYSVCKRFGDASRVFDE---------------------------- 94

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
              M  R+ VSW+ +++ Y R   F E + LF +M    ++PN +  VSVL AC   G +
Sbjct: 95  ---MLVRDVVSWTGVISGYVRAGLFDEAVGLFLRMD---VEPNAATFVSVLVACGRKGYL 148

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
           + G  +H  + +      + ++ A++DMY KCG +  A  VF+ ++ KD  +W ++ISG+
Sbjct: 149 SVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGL 208

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
                 K++LELF  M  SG +P      +VL+ C     +  G  + E++     ++  
Sbjct: 209 VQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDR-KAIKWD 267

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           ++    +VD+ A+ G +E + +       G+   +   W ALL+   ++G
Sbjct: 268 IQIGTAMVDMYAKCGCIEMSMQIFN----GMPHKNVLTWNALLNGLAMHG 313



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 10/215 (4%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           ++A+++ Y+     K    ++R++ + G  P+     +VL +CA    I +G  VH    
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +     N+ +  ++V  YS C     A  VF+ +  +D  +W  +ISG    G   +++ 
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVG 121

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE-NMSAVYGVEPQLEHYACVVDL 309
           LF RM     +P   TFV+VL  C     +  G  +   +  + +GV   LE    ++D+
Sbjct: 122 LFLRM---DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGV--GLEVSNALMDM 176

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             + G +  A++  +E    L   D   W +++S 
Sbjct: 177 YVKCGCLPGAKQVFDE----LAEKDIVSWTSIISG 207


>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
          Length = 950

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 144/414 (34%), Positives = 229/414 (55%), Gaps = 11/414 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++  + Q    K +V  Y  ML  G  PN   F  ++ AC  L  L + G  +H   +K 
Sbjct: 349 LVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASLQDLRS-GRKIHNQTLKM 407

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               + FV S+L++ Y    ++  A+ +F   P +++V W +++ GY        A ELF
Sbjct: 408 ACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLISGYSNNSKMVEAEELF 467

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMP RN  SW++I++ Y++   F + L  F  M   G  P E    SVL ACA L ++ 
Sbjct: 468 KKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEITFSSVLLACASLCSLE 527

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH+   +  +++++ + TA+ DMY+K G + S+  VF  +  ++  AW AMI G+A
Sbjct: 528 MGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEMPKRNDVAWTAMIQGLA 587

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG A++S+ LF+ M+ +G  P E TF+A+L  C+H+ +V   ++ FE M A  G+ P+ 
Sbjct: 588 ENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAMHYFEMMQAC-GISPKA 646

Query: 301 EHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +HY C+VD+LARAG + EAE     IE K       +AN W ALLSAC IY   E+G R 
Sbjct: 647 KHYTCMVDVLARAGHLAEAEDLLLKIESK------SEANSWAALLSACNIYRNKEMGERA 700

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEV 411
            ++L E+   + + +VL  N+Y   G   +A ++R L+    +KK  GCS +++
Sbjct: 701 AKRLQELDKDNTAGYVLLSNMYASCGKWKDAAEMRILMKGINLKKDGGCSWVQI 754



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 199/437 (45%), Gaps = 69/437 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG----PLENFGMFVHAH 56
           MI G++    PK ++  + +ML  G  PN  T   +IKAC+  G     +   G+ + ++
Sbjct: 216 MIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSIVGLAMKSN 275

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           ++    G    V +SL+  Y        AR +FD+   RDVV+WT ++D Y ++GD E A
Sbjct: 276 LLDKNLG----VRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGDLEGA 331

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R + ++MPERN VSW  ++A + +  + KE +SL+ QM   G +PN S   SVL ACA L
Sbjct: 332 RRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGACASL 391

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +  G  +H+   +     NV +++A++DMY KC  +  A  +F  +  K+   WN++I
Sbjct: 392 QDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLPQKNIVCWNSLI 451

Query: 237 SGVAMNGDAKKSLELFDR-------------------------------MVKSGTQPTET 265
           SG + N    ++ ELF +                               M+ SG  P E 
Sbjct: 452 SGYSNNSKMVEAEELFKKMPARNVASWNSIISGYAQNRQFIDALKSFHAMLASGQSPGEI 511

Query: 266 TFVAVLTTC-----------THAKMVRDGL--NLF--ENMSAVYGVEPQLEH-------- 302
           TF +VL  C            HAK+++ G+  ++F    +S +Y     L+         
Sbjct: 512 TFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRVFYEM 571

Query: 303 -------YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
                  +  ++  LA  G  EE+    E+ +      +   + A+L AC   G +E   
Sbjct: 572 PKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLVEHAM 631

Query: 356 RVWRKLAEMGITDFSTH 372
             +  +   GI+  + H
Sbjct: 632 HYFEMMQACGISPKAKH 648



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 153/343 (44%), Gaps = 37/343 (10%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE 125
           PF    ++  +     + +AR LFD  P+R VV++TTMVD   K G   +A EL+ + P 
Sbjct: 148 PFAYDFMVREHVKAGDIVSARRLFDGMPERSVVSYTTMVDALMKRGSVRDAVELYRQCPL 207

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
            +   ++A++A +      K+ L +F +M   G+ PNE  LVSV+ AC   G     + +
Sbjct: 208 CSVPFFTAMIAGFVLNELPKDALGVFHEMLSCGVSPNEITLVSVIKACIGAGEFDLAMSI 267

Query: 186 HSYAKRYH-LEKN-------------------------------VILATAVVDMYSKCGH 213
              A + + L+KN                               V+  TA++D+Y++ G 
Sbjct: 268 VGLAMKSNLLDKNLGVRNSLITLYLRKGDADAARRMFDEMEVRDVVSWTALLDVYAELGD 327

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  V + +  ++  +W  +++     G+AK+++ L+ +M+  G +P  + F +VL  
Sbjct: 328 LEGARRVLDEMPERNEVSWGTLVARHEQKGNAKEAVSLYSQMLADGCRPNISCFSSVLGA 387

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C   + +R G  +  N +        +   + ++D+  +   + +A+         L   
Sbjct: 388 CASLQDLRSGRKI-HNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFY----SLPQK 442

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +   W +L+S      K+     +++K+    +  +++ +  Y
Sbjct: 443 NIVCWNSLISGYSNNSKMVEAEELFKKMPARNVASWNSIISGY 485


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 231/431 (53%), Gaps = 52/431 (12%)

Query: 18  YLDMLDMG-FEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           Y  ML+ G   P+ +TFP ++KAC  I G  E  G  VH  +VK GFG D +V + L+  
Sbjct: 195 YRKMLERGESSPDKHTFPFVLKACAYIFGFSE--GKQVHCQIVKHGFGGDVYVNNGLIHL 252

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y                               G  G  + AR++F++MPER+ VSW++++
Sbjct: 253 Y-------------------------------GSCGCLDLARKVFDEMPERSLVSWNSMI 281

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR---Y 192
            A  R  ++   L LFR+MQ    +P+   + SVL+ACA LG+++ G W H++  R    
Sbjct: 282 DALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDV 340

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            +  +V++  ++++MY KCG +  A  VF+G+  +D  +WNAMI G A +G A++++  F
Sbjct: 341 DVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFF 400

Query: 253 DRMV--KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           DRMV  +   +P   TFV +L  C H   V  G   F+ M   Y +EP LEHY C+VDL+
Sbjct: 401 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 460

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDF 369
           ARAG + EA   I+  M      DA +W +LL AC   G  +E+   + R +      + 
Sbjct: 461 ARAGYITEA---IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNE 517

Query: 370 ST-------HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           S+       +VL   +Y  A    +   VRKL+SE G++K+PGCS IE+NG+  EF AGD
Sbjct: 518 SSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGD 577

Query: 423 NRHAQAGEIYR 433
             H Q  +IY+
Sbjct: 578 TSHPQTKQIYQ 588



 Score = 42.7 bits (99), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 39/224 (17%)

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFE 222
           + S+   C+ +  + Q   +H++  R    +    + L   ++ + S    V+ A  VF+
Sbjct: 108 IFSLAETCSDMSQLKQ---LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 164

Query: 223 GISNKDAGAWNAMISGVAMNGDAK-KSLELFDRMVKSG-TQPTETTFVAVLTTC------ 274
            I N  +  WN +I   A +   K ++  L+ +M++ G + P + TF  VL  C      
Sbjct: 165 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 224

Query: 275 -----THAKMVRDGL--NLFEN--MSAVYGV---------------EPQLEHYACVVDLL 310
                 H ++V+ G   +++ N  +  +YG                E  L  +  ++D L
Sbjct: 225 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 284

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            R G  + A +   E M      D     ++LSAC   G + +G
Sbjct: 285 VRFGEYDSALQLFRE-MQRSFEPDGYTMQSVLSACAGLGSLSLG 327


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 133/414 (32%), Positives = 233/414 (56%), Gaps = 6/414 (1%)

Query: 29  NNYTFPPLIKACVILGP-LENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           + +  P ++  C   GP   + G  +H + +K G G    V ++++  Y+       A  
Sbjct: 378 DEFILPTILGVCS--GPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADL 435

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           +F   P R+ ++WT M+  + + GD   AR  F+ MPERN V+W+++++ Y +    +E 
Sbjct: 436 VFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEG 495

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L L+  M+  G++P+     + + ACA L  +  G+ V ++A ++ L  NV +A ++V M
Sbjct: 496 LKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTM 555

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           YS+CG +  A + F+ I +KD  +WNAM++  A NG   K ++ F+ M+K+  +P   ++
Sbjct: 556 YSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISY 615

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V+VL+ C+H  +V +G + F++M+ V+G+ P  EH++C+VDLL RAG++E+A+  IE   
Sbjct: 616 VSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIE--- 672

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
           G     +A VW ALL +CR++  + +     +KL E+ +     +VL  N+Y E+G    
Sbjct: 673 GMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDN 732

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441
              +RKL+   G++   GCS IEV+  V  F   +  H Q  E+Y  +   +KM
Sbjct: 733 VADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKM 786



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 178/389 (45%), Gaps = 12/389 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDML----DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAH 56
           MI GY Q  F   S   +  M+    D G   + ++F  ++KAC  LG      + +HA 
Sbjct: 113 MISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGD-SRLAIQLHAL 171

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           V K GFG +  + +S++  Y     +  A  +F       +  W +M+ GY +M     A
Sbjct: 172 VSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKA 231

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            ++F +MPER+ VSW+ +++ +S+     + L++F +M   G  PN     SVL+ACA  
Sbjct: 232 LQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACAST 291

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +  G  +H+   R     +++    ++DMY+KCG +  A  VF+ +   D  +WN++I
Sbjct: 292 SDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLI 351

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +GV   G  + +L LF++M +S     E     +L  C+       G  L    +   G+
Sbjct: 352 TGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTG-ELLHGYTIKSGM 410

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
                    ++ + A+ G  ++A+         +   +   W A+++A    G I     
Sbjct: 411 GSSAPVGNAIITMYAKCGDTDKADLVFRL----MPLRNTISWTAMITAFSRSGDIGKARG 466

Query: 357 VWRKLAEMGITDFSTHVLSY--NIYKEAG 383
            +  + E  I  +++ + +Y  N + E G
Sbjct: 467 YFDMMPERNIVTWNSMLSTYVQNGFSEEG 495



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/365 (21%), Positives = 150/365 (41%), Gaps = 46/365 (12%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           M +   +  F    K C       +    +HA ++  G     F++++LL  YS      
Sbjct: 1   MSYMQISQKFYDAFKQCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTH 60

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER--NAVSWSAIMAAYSR- 140
            A  +F ++  R++ TW TM+          +A +LF++MP R  ++VSW+ +++ YS+ 
Sbjct: 61  DAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQN 120

Query: 141 ---ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                 F+    + R   + G   +     SV+ AC  LG     + +H+   +      
Sbjct: 121 GFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGME 180

Query: 198 VILATAVVDMYSKCGHV-------------------------------HSALSVFEGISN 226
             +  +VV MY KCG V                               + AL +F  +  
Sbjct: 181 TCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPE 240

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           +D  +WN +IS  + +G   + L +F  M   G  P   T+ +VL+ C     ++ G +L
Sbjct: 241 RDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHL 300

Query: 287 FENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
               + +  +E  L+      ++D+ A+ G ++ A++  +     L   D   W +L++ 
Sbjct: 301 H---ARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKS----LREHDHISWNSLITG 353

Query: 345 CRIYG 349
              +G
Sbjct: 354 VVHFG 358



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 117/260 (45%), Gaps = 41/260 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y+Q  F +  +  Y+ M   G +P+  TF   I+AC  L  ++  GM V  H  KF
Sbjct: 482 MLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVK-LGMQVVTHATKF 540

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  V +S++  YS    +  A+  FD   D+D+++W                    
Sbjct: 541 GLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISW-------------------- 580

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                      +A++AA+++     +V+  F  M +   KPN    VSVL+ C+H+G + 
Sbjct: 581 -----------NAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVA 629

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
           +G  +  S  + + +       + +VD+  + G +  A  + EG+  K +A  W+A++  
Sbjct: 630 EGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGS 689

Query: 239 VAMNGD-------AKKSLEL 251
             ++ D       AKK +EL
Sbjct: 690 CRVHHDLRLAETAAKKLMEL 709


>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
           communis]
 gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
           communis]
          Length = 810

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 192/299 (64%), Gaps = 1/299 (0%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
            +GY  +  P  S   Y+    +G  P+N T+P L+KAC  LG ++  GM  H HVV+ G
Sbjct: 511 FKGYSGSESPGQSFHFYIQSQRLGIFPDNLTYPFLVKACTQLGSID-MGMQAHGHVVRHG 569

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  D +V +SL+  YS +  +  A  +F      DVV+WT+M+ GY K GD E+AR+LF+
Sbjct: 570 FENDVYVQNSLVNMYSNLGDIRAASYIFQTMSQLDVVSWTSMIAGYNKSGDVESARKLFD 629

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           KMPE+N V+WS +++ Y++ + F + + L+  +Q  G++ NE+ +VSV+++CAHLGA+  
Sbjct: 630 KMPEKNLVTWSTMISGYAKNNCFNKAIELYNVLQSEGVQANETVMVSVISSCAHLGALEL 689

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G   H Y  R  +  N+IL TA+VDMY++CG +  A+ VF+ +  KDA +W A+I+G AM
Sbjct: 690 GEKAHDYVVRNKITVNLILGTALVDMYARCGSIDKAVQVFDELGEKDALSWTALIAGFAM 749

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +G A+K+L+ F  M+++G  P + TF AVL+ C+H  +V  G+ +FE M   Y VEP+L
Sbjct: 750 HGHAEKALQYFSEMIRTGLTPRDITFTAVLSACSHRGLVERGMKIFETMKRDYCVEPRL 808



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 114/249 (45%), Gaps = 36/249 (14%)

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
            + Q Q +G+ P+      ++ AC  LG+I  G+  H +  R+  E +V +  ++V+MYS
Sbjct: 526 FYIQSQRLGIFPDNLTYPFLVKACTQLGSIDMGMQAHGHVVRHGFENDVYVQNSLVNMYS 585

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS----------- 258
             G + +A  +F+ +S  D  +W +MI+G   +GD + + +LFD+M +            
Sbjct: 586 NLGDIRAASYIFQTMSQLDVVSWTSMIAGYNKSGDVESARKLFDKMPEKNLVTWSTMISG 645

Query: 259 --------------------GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
                               G Q  ET  V+V+++C H   +  G    + +     +  
Sbjct: 646 YAKNNCFNKAIELYNVLQSEGVQANETVMVSVISSCAHLGALELGEKAHDYV-VRNKITV 704

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            L     +VD+ AR G +++A +  +E    LG  DA  W AL++   ++G  E   + +
Sbjct: 705 NLILGTALVDMYARCGSIDKAVQVFDE----LGEKDALSWTALIAGFAMHGHAEKALQYF 760

Query: 359 RKLAEMGIT 367
            ++   G+T
Sbjct: 761 SEMIRTGLT 769


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 238/434 (54%), Gaps = 37/434 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q+     ++  +  ML +GF+PN +T   L+KA    GP ++ G  +HA  +K+
Sbjct: 177 LISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT-GPSDHHGRQLHAFSLKY 235

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  +  V SSLL+ Y+                      W  M            A+ +F
Sbjct: 236 GYDMNVHVGSSLLDMYA---------------------RWAHM----------REAKVIF 264

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  +N VSW+A++A ++R  + + V+ LF QM   G +P      SVL ACA  G++ 
Sbjct: 265 NSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLE 323

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG WVH++  +   +    +   ++DMY+K G +  A  VF  +  +D  +WN++ISG A
Sbjct: 324 QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYA 383

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   ++L+LF++M+K+  QP E TF++VLT C+H+ ++ +G   FE M   + +E Q+
Sbjct: 384 QHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQV 442

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            H+  VVDLL RAG + EA KFIEE         A VWGALL ACR++  +++G     +
Sbjct: 443 AHHVTVVDLLGRAGRLNEANKFIEEMP---IKPTAAVWGALLGACRMHKNMDLGVYAAEQ 499

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   D   HVL  NIY  AG   +A KVRK++ E+G+KK+P CS +E+   V  F+A
Sbjct: 500 IFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVA 559

Query: 421 GDNRHAQAGEIYRV 434
            D+ H    EI R+
Sbjct: 560 NDDSHPMREEIQRM 573



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 194/421 (46%), Gaps = 68/421 (16%)

Query: 19  LDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           LD+++ G  EP    +  ++  C  L  L+  G  +HAH+    F ED            
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQ-GRAIHAHIQSSTF-ED------------ 138

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                             D+V    +++ Y K G  E A++LF+KMP ++ VSW+ +++ 
Sbjct: 139 ------------------DLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISG 180

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           YS+     E L+LF +M  +G +PNE  L S+L A     +   G  +H+++ +Y  + N
Sbjct: 181 YSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMN 240

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + ++++DMY++  H+  A  +F  ++ K+  +WNA+I+G A  G+ +  + LF +M++
Sbjct: 241 VHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLR 300

Query: 258 SGTQPTETTFVAVLTTCT----------HAKMVRDG-------LNLFENMSAVYG----- 295
            G +PT  T+ +VL   +          HA +++ G        N   +M A  G     
Sbjct: 301 QGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDA 360

Query: 296 -------VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
                  V+  +  +  ++   A+ G+  EA +  E+ +      +   + ++L+AC   
Sbjct: 361 KKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHS 420

Query: 349 GKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
           G ++ G   +  + +  I    + HV   ++   AG   EAN   K I E  M  KP  +
Sbjct: 421 GLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEAN---KFIEE--MPIKPTAA 475

Query: 408 V 408
           V
Sbjct: 476 V 476


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 130/348 (37%), Positives = 211/348 (60%), Gaps = 7/348 (2%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
             +++ Y K G  + AR+LF+++PE+N V W++++  Y +I    EV+ L R+M    +K
Sbjct: 247 AALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   +  VL+ACA +GA   G WVH +A++  +  +V + TA++DMY+KCG + +A  V
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKV 365

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F+ ++ ++   WNA++SG A +G A+ ++ELF  M +SG +P   TF+AVL  C H+ +V
Sbjct: 366 FDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLV 425

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
            +G   F+ M   Y + P++EHY C+VDLL RAG+++EA + I+     +   +  VWGA
Sbjct: 426 ENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMM---VVEPNVVVWGA 482

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
           LLSAC I+G IE+G      + ++   D  ++V+  N+Y  A        VR+++ E G+
Sbjct: 483 LLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGI 542

Query: 401 KKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF---LKMSNLV 445
            K  GCS+IE+  VV EF+  D  H ++ EIY V+      LKM+  V
Sbjct: 543 CKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYV 590



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 165/370 (44%), Gaps = 45/370 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIR Y  +  P +++  Y  M        + YT+P + KAC     +E  G  VH  +V+
Sbjct: 75  MIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEK-GKEVHGVIVR 133

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G+  D F+ SSLL FY +  ++G                               NA+++
Sbjct: 134 IGYELDGFLQSSLLNFYMVCGEIG-------------------------------NAQQV 162

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGA 178
           F++   ++ V W+A++  Y+R     +   +F++M EV  ++PNE  ++ ++ AC     
Sbjct: 163 FDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKN 222

Query: 179 ITQGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +  G  +H Y  K   L + V L  A++++Y KCG++  A  +F+ I  K+   WN++I 
Sbjct: 223 LKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLIC 282

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYG 295
           G    G   + +EL   M  S  +P   T   VL+ C        G  ++ F     ++ 
Sbjct: 283 GYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWD 342

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           V         ++D+ A+ G +  A K  ++    +   +   W A+LS    +G+ E   
Sbjct: 343 VFIG----TALIDMYAKCGFIGAARKVFDQ----MNERNVATWNAILSGYASHGQAESAI 394

Query: 356 RVWRKLAEMG 365
            ++ ++ E G
Sbjct: 395 ELFSEMRESG 404



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 125/271 (46%), Gaps = 9/271 (3%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GM 159
           T +++ +      + A ++F +  E +   ++A++ AYS        +S++ +M+    +
Sbjct: 42  TKIINSFLSHACLDYATQVFNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNI 101

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
             ++     V  ACA   A+ +G  VH    R   E +  L +++++ Y  CG + +A  
Sbjct: 102 LGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQ 161

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAK 278
           VF+    KD   WNA+I+G A  G    S  +F  MV+    +P E T + ++  C  +K
Sbjct: 162 VFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESK 221

Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
            ++ G  +   M     +   ++  A +++L  + G ++ A K  +E    +   +  VW
Sbjct: 222 NLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDE----IPEKNTVVW 277

Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
            +L+     Y +I   N V   L EM +++ 
Sbjct: 278 NSLICG---YCQIGSLNEVIELLREMHLSNL 305



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 114/253 (45%), Gaps = 19/253 (7%)

Query: 6   MQANFPKLSVFC-YLD----MLDMGFEPNNYTFPPLIKACVILGPL-ENFGMFVHAHVVK 59
           ++A    L V C YLD    + D   E N   +  LI     +G L E   +    H+  
Sbjct: 245 LEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSN 304

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGT------ARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
                D F VS +L   S   +MG            +K    DV   T ++D Y K G  
Sbjct: 305 LK--PDRFTVSGVL---SACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFI 359

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
             AR++F++M ERN  +W+AI++ Y+     +  + LF +M+E G +P+    ++VL AC
Sbjct: 360 GAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHAC 419

Query: 174 AHLGAITQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE-GISNKDAGA 231
           AH G +  G  +     + Y +   V     +VD+  + G +  A  + +  +   +   
Sbjct: 420 AHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVV 479

Query: 232 WNAMISGVAMNGD 244
           W A++S  +++G+
Sbjct: 480 WGALLSACSIHGN 492


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 241/445 (54%), Gaps = 29/445 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q  + + ++  +  M+  G EPN+ T   L+ AC  LG L   GM  HA+ +K 
Sbjct: 366 VIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQ-GMETHAYSLK- 423

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                      LL   +     G    L         V    ++D Y K   F+ AR +F
Sbjct: 424 ---------KCLLSLDNDFGGDGDGEDL---------VVHNALIDMYSKCRSFKAARTIF 465

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHL 176
             +P  ERN V+W+ ++  Y++  D  + L LF +M  +   + PN   +  +L ACAHL
Sbjct: 466 NSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHL 525

Query: 177 GAITQGLWVHSYAKRYH-LEKNV-ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            ++  G  +H+Y  R+H  E +V  +A  ++DMYSKCG V +A +VF+ +  ++  +W +
Sbjct: 526 SSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTS 585

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M+SG  M+G  K++L++FD+M K+G  P + +F+ +L  C+H+ MV  GL+ F+ M + Y
Sbjct: 586 MMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDY 645

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           GV    +HYACV+DLLAR+G +++A K I+E         A +W ALLSACR++  +E+ 
Sbjct: 646 GVIASAQHYACVIDLLARSGRLDKAWKTIQEMP---MEPSAAIWVALLSACRVHSNVELA 702

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL  M   +  ++ L  NIY  A    +  ++R+L+ ++G+KK+PGCS ++    
Sbjct: 703 EYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKG 762

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
              F  GD  H  + EIY ++   +
Sbjct: 763 TASFFVGDRSHPLSPEIYSLLERLI 787



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 182/364 (50%), Gaps = 28/364 (7%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           ++ AC  L  L      +H++ ++ G   D FV ++L++ Y+    M  A  +F+    +
Sbjct: 265 ILPACASLKALPQTKE-IHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLF 151
           DVV+W  MV GY + G F  A ELF+ M + N     ++WSA++A Y++    +E L  F
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL------------EKNVI 199
           +QM   G +PN   ++S+L+ACA LGA++QG+  H+Y+ +  L             ++++
Sbjct: 384 QQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLV 443

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAG--AWNAMISGVAMNGDAKKSLELFDRMVK 257
           +  A++DMYSKC    +A ++F  I  ++     W  MI G A  GD+  +L+LF  M+ 
Sbjct: 444 VHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS 503

Query: 258 S--GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAG 314
                 P   T   +L  C H   +R G  +   ++  +  E  +   A C++D+ ++ G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCG 563

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTH 372
            V+ A    +     +   +   W +++S   ++G+ +    ++ K+ + G    D S  
Sbjct: 564 DVDTARNVFDS----MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFL 619

Query: 373 VLSY 376
           VL Y
Sbjct: 620 VLLY 623



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 143/308 (46%), Gaps = 42/308 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R +++      ++     ML  G +P+++T P  +KAC  L P    G   H  +   
Sbjct: 120 LVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALKACGEL-PSYRSGSAFHGLICCN 178

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + FV ++L+  YS                               + G  E+A  +F
Sbjct: 179 GFESNVFVCNALVAMYS-------------------------------RSGSLEDASLVF 207

Query: 121 EKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEV------GMKPNESGLVSVLT 171
           +++  +   + +SW++I+AA+ + S+ +  L LF +M  +        + +   +V++L 
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILP 267

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA L A+ Q   +HSYA R     +  +  A++D Y+KCG +  A++VF  +  KD  +
Sbjct: 268 ACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVS 327

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WNAM++G   +G    + ELF  M K        T+ AV+         ++ L+ F+ M 
Sbjct: 328 WNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM- 386

Query: 292 AVYGVEPQ 299
            +YG EP 
Sbjct: 387 ILYGSEPN 394



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 82/187 (43%), Gaps = 9/187 (4%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  Y   G   +A  + E++    AV W+ ++ A+         + +  +M   G K
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   L   L AC  L +   G   H        E NV +  A+V MYS+ G +  A  V
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 221 FEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMV-----KSGTQPTE-TTFVAVL 271
           F+ I+ K   D  +WN++++      + + +L+LF  M      K+  + ++  + V +L
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNIL 266

Query: 272 TTCTHAK 278
             C   K
Sbjct: 267 PACASLK 273



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 2/145 (1%)

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L T VV  Y  CG    ALSV E +    A  WN ++      G   +++ +  RM+++G
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           T+P   T    L  C      R G + F  +    G E  +     +V + +R+G +E+A
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSG-SAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDA 203

Query: 320 EKFIEEKMGGLGGGDANVWGALLSA 344
               +E +   G  D   W ++++A
Sbjct: 204 SLVFDE-ITRKGIDDVISWNSIVAA 227


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 160/438 (36%), Positives = 240/438 (54%), Gaps = 43/438 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MIR Y Q   P  ++  +L ML       P+ +T+P L+K+C  L      G  +H  + 
Sbjct: 65  MIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQ-PRVGKQLHGLIY 123

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D +V + L+  YS   K G                                A +
Sbjct: 124 KSGLESDRYVSNGLIHMYSSCGKSG-------------------------------RAYK 152

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F KM +R+ VSW++++  +       E + LF +M E G++PNE+ +VSVL ACA  GA
Sbjct: 153 VFGKMRDRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGA 212

Query: 179 ITQGLWVHSY--AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           +  G  V      ++  LE NV   TA++DMY+KCG + SA  VF+GI NKD  AW AMI
Sbjct: 213 VGMGRRVQGVIEERKIGLEANV--RTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMI 270

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           SG+A +G  ++++ LFD+M   G +P E T  AVL+ C +A    +G   F +M   YG+
Sbjct: 271 SGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGI 330

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P ++HY C+VDLLAR G ++EAE+FI  KM      D  +W  L+ A +++G I+   +
Sbjct: 331 KPTIQHYGCMVDLLARTGHLDEAEEFI-RKMP--IEPDVVLWRTLIWASKVHGDIDRSEQ 387

Query: 357 VW--RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           +   R L +M   D  ++VL  N+Y  AG   +  K+R+L+++ G+ K PGCS IEV+G+
Sbjct: 388 LMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGL 447

Query: 415 VEEFLAGDNRHAQAGEIY 432
           V EF AGD+ H +A +IY
Sbjct: 448 VHEFAAGDSGHIEAEKIY 465



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 140/323 (43%), Gaps = 21/323 (6%)

Query: 73  LEFYSLVHKMGTARALFDKSPD-----RDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           +E  SL   M     +  KSPD     R++    T        GD   A  +   +  +N
Sbjct: 1   MEITSLSQAMQLHAQIL-KSPDPKKQTRNLTPLFTFA-ALSPAGDLTYAHLILNSLSTQN 58

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           +   + ++ AYS+  D  + L LF  M  Q    +P++     +L +CA L     G  +
Sbjct: 59  SFFHNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQL 118

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
           H    +  LE +  ++  ++ MYS CG    A  VF  + ++D  +W +MI G   +  A
Sbjct: 119 HGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRA 178

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV---RDGLNLFENMSAVYGVEPQLEH 302
            +++ LF+ MV+ G +P E T V+VL  C  A  V   R    + E      G+E  +  
Sbjct: 179 LEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERK--IGLEANVR- 235

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
              ++D+ A+ G +  A K  +    G+   D   W A++S    +G  E    ++ ++ 
Sbjct: 236 -TALIDMYAKCGSIGSARKVFD----GIVNKDVFAWTAMISGLANHGLCEEAVTLFDQME 290

Query: 363 EMGI-TDFSTHVLSYNIYKEAGW 384
             G+  D  T     +  + AGW
Sbjct: 291 SFGLRPDERTMTAVLSACRNAGW 313


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 246/449 (54%), Gaps = 9/449 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+     + ++     M  +G + ++ T+  +I AC  +G  +  G  VHA+++K 
Sbjct: 260 MISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQ-MGKQVHAYILKN 318

Query: 61  GFGED-PFVVS---SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
               +  F +S   +L+  Y   +K+  AR +F   P R+++TW  ++ GY   G  E A
Sbjct: 319 ELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEA 378

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           +  FE+MP +N ++ + +++  ++     E L LF+QM+  G +P +      LTAC+ L
Sbjct: 379 KSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL 438

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G  +H+       E ++ +  A++ MY+KCG V +A SVF  + + D  +WN+MI
Sbjct: 439 GALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMI 498

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           + +  +G   K++ELFD+M+K G  P   TF+ VLT C+HA +V  G + F +M   YG+
Sbjct: 499 AALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  +HYA +VDL  RAGM   A   I+      G   A VW ALL+ CRI+G +++G  
Sbjct: 559 TPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPG---APVWEALLAGCRIHGNMDLGIE 615

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              +L ++   +  T+VL  NIY + G   E  KVRKL+ +  ++K+P CS IEV   V 
Sbjct: 616 AAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVH 675

Query: 417 EFLAGDNRHAQAGEIYRVIHSF-LKMSNL 444
            F+  D+ H +   +YR +    L+M  L
Sbjct: 676 VFMVDDDVHPEVLSVYRYLEQLGLEMKKL 704



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 171/364 (46%), Gaps = 45/364 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY        ++  +  M    F P+++TF  ++ A V+    E     +H  VVK 
Sbjct: 118 MITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKT 177

Query: 61  GFG-EDPFVVSSLLEFYSL--------VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           G G     V+++LL  Y             M +AR LFD+ P RD +TWTTM+ GY +  
Sbjct: 178 GMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRND 237

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D   ARE+FE M E    +W+A+++ Y     F+E L+L R+M+ +G++ ++    ++++
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKN----VILATAVVDMYSKCGHVHSALSVFEGISNK 227
           ACA++G+   G  VH+Y  +  L  N    + ++ A++ +Y K   V  A  +F  +  +
Sbjct: 298 ACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357

Query: 228 DAGAWNA-------------------------------MISGVAMNGDAKKSLELFDRMV 256
           +   WNA                               MISG+A NG   + L+LF +M 
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR 417

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G +P +  F   LT C+    + +G  L   +  + G E  L     ++ + A+ G+V
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVV 476

Query: 317 EEAE 320
           E AE
Sbjct: 477 EAAE 480



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 83/437 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHAH++  GF      ++ LLE Y     +  AR LF++ P+ D +  TT++  Y  +G+
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 113 FENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
            E  RE+F   P   R++V ++A++  Y+   D    L LFR M+    +P++    SVL
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 171 TA----------CA--HLGAITQGLWVHS----------YAKRYH--------------- 193
           +A          C   H   +  G+   S          Y KR                 
Sbjct: 155 SALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKL 214

Query: 194 ----LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
                +++ +  T ++  Y +   ++ A  VFE +      AWNAMISG    G  +++L
Sbjct: 215 FDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEAL 274

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVRDGLNLFENMSAVYGVEP 298
            L  +M   G Q  + T+  +++ C            HA ++++ LN   N S    V  
Sbjct: 275 TLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELN--PNHSFCLSVSN 332

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            L      + L  +   V+EA K        +   +   W A+LS     G++E     +
Sbjct: 333 AL------ITLYCKNNKVDEARKIFY----AMPVRNIITWNAILSGYVNAGRMEEAKSFF 382

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK--------KPGCSVIE 410
               EM + +  T  +  +   + G+  E  K+ K +   G +            CSV+ 
Sbjct: 383 E---EMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL- 438

Query: 411 VNGVVEEFLAGDNRHAQ 427
             G +E    G   HAQ
Sbjct: 439 --GALEN---GRQLHAQ 450


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 142/415 (34%), Positives = 221/415 (53%), Gaps = 35/415 (8%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML    EP+ +T+  ++KAC       N GM VH  ++K G G   FV S+L        
Sbjct: 451 MLRSKMEPDEFTYGSVLKACAGQRAFSN-GMEVHGRIIKSGMGLKMFVGSAL-------- 501

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                  VD Y K G  E A ++  ++ E+  VSW+AI++ +S 
Sbjct: 502 -----------------------VDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSL 538

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               ++    F  M E+G++P+     +VL  CA+L  +  G  +H+   +  L  +V +
Sbjct: 539 QKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYI 598

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            + +VDMYSKCG++H +L +F     +D+  WNAMI G A +G  +++LELF+ M+    
Sbjct: 599 TSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENI 658

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P   TFV+VL  C+H    + GL  F+ M+++Y +EPQLEHY+C+VD+L R+G VEEA 
Sbjct: 659 KPNHATFVSVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEAL 718

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           + I++        DA +W  LLS C+I G +EV  +    L ++   D S + L  NIY 
Sbjct: 719 RLIQDMP---FEADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYA 775

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           +AG   + +K+R+ +    +KK+PGCS IEV   V  FL  D  H +   IY ++
Sbjct: 776 DAGMWQQVSKIRQTMRSHNLKKEPGCSWIEVKDEVHTFLVCDKAHPKCEMIYSLL 830



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 2/256 (0%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           TF  + + C     L+  G   HAH++  GF    FV + L++ Y     +  A  +F++
Sbjct: 26  TFSHIFQECSNRRALKP-GKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEE 84

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-NAVSWSAIMAAYSRISDFKEVLSL 150
            P RD+V+W TMV G    G  E A+ +F  MP   + VSW+++++ Y +  D ++ +++
Sbjct: 85  MPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAV 144

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210
           F +M+++G+  + + L   L  C+ L     G+ +H  A +   + +V+  +A+VDMY+K
Sbjct: 145 FLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAK 204

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
           C  +  +L VF  + +K+  +W+A I+G   N    + L+LF  M + G   +++T+ +V
Sbjct: 205 CNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASV 264

Query: 271 LTTCTHAKMVRDGLNL 286
             +C      R G  L
Sbjct: 265 FRSCAGLSASRLGTQL 280



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 162/352 (46%), Gaps = 43/352 (12%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + +M   G   +  T+  + ++C  L      G  +H H +K  FG D            
Sbjct: 246 FKEMQRKGIGVSQSTYASVFRSCAGLSA-SRLGTQLHCHALKTDFGSD------------ 292

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                              V+  T  +D Y K  +  +A +LF  +P+ N  S++A++  
Sbjct: 293 -------------------VIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIG 333

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y+R     +   LF Q+Q+     +E  L   L+A A +   ++GL +H  A + +L  N
Sbjct: 334 YARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSN 393

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           + +A A++DMY KCG +  A  +F+ +  +D  +WNA+I+    N    K+L  F  M++
Sbjct: 394 ICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLR 453

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           S  +P E T+ +VL  C   +   +G+ +   +    G+  ++   + +VD+ ++ GM+E
Sbjct: 454 SKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKS-GMGLKMFVGSALVDMYSKCGMME 512

Query: 318 EAEKF---IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           EAEK    +EE+           W A++S   +  K E   R +  + EMG+
Sbjct: 513 EAEKIHYRLEEQT-------MVSWNAIISGFSLQKKSEDSQRFFSHMLEMGV 557



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 45/350 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q    + S+  +L M D+G   ++ T    +K C +L   +  G+ +H   V+ 
Sbjct: 128 LISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKICSLLED-QVLGIQIHGIAVQM 186

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF                               D DVVT + +VD Y K    E++ ++F
Sbjct: 187 GF-------------------------------DYDVVTGSALVDMYAKCNSLEDSLDVF 215

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++P++N +SWSA +A   +       L LF++MQ  G+  ++S   SV  +CA L A  
Sbjct: 216 SELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASR 275

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H +A +     +VI+ TA +DMY+KC ++  A  +F  + + +  ++NAMI G A
Sbjct: 276 LGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYA 335

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            N    ++ +LF ++ K+     E +    L+     K   +GL L         ++  L
Sbjct: 336 RNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHG-----LAIKSNL 390

Query: 301 EHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
               CV    +D+  + G + EA    +E    +   D   W A+++AC 
Sbjct: 391 SSNICVANAILDMYGKCGALVEASGLFDE----MEIRDPVSWNAIITACE 436



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 109/220 (49%), Gaps = 16/220 (7%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++     ++D YGK G    A  LF++M  R+ VSW+AI+ A  +     + LS F  M 
Sbjct: 393 NICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAML 452

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
              M+P+E    SVL ACA   A + G+ VH    +  +   + + +A+VDMYSKCG + 
Sbjct: 453 RSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMME 512

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  +   +  +   +WNA+ISG ++   ++ S   F  M++ G +P   T+  VL TC 
Sbjct: 513 EAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCA 572

Query: 276 -----------HAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
                      HA+M++      E +S VY     ++ Y+
Sbjct: 573 NLATVGLGKQIHAQMIK-----LELLSDVYITSTLVDMYS 607


>gi|255575746|ref|XP_002528772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531775|gb|EEF33594.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 155/475 (32%), Positives = 247/475 (52%), Gaps = 41/475 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI G+    F + ++  +L+M       PN  TF  L  AC  LG     G  +HA ++ 
Sbjct: 202 MIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLG-FHRLGKQLHARLIT 260

Query: 60  FGFGEDPF--------------------------------VVSS---LLEFYSLVHKMGT 84
            G   D +                                VV S   ++  Y  +  +  
Sbjct: 261 EGLDNDDYDGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDK 320

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A+ LFD  P RD +TWT+M+DGY  +G+   A  LF  MPE++AV+W+ +++ + R   F
Sbjct: 321 AQNLFDTMPVRDKITWTSMIDGYLVIGNVSEACSLFLYMPEKDAVAWTTMISGHVRNELF 380

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E   LF +M   G++P  S    +  A   + ++ QG  +H+   +   + ++IL  ++
Sbjct: 381 AEATYLFSEMLTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDNDLILENSL 440

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           + MY+KCG + +A  +F  + + D  +WN+MI G + +G A ++LE+F+ MV SGT P  
Sbjct: 441 ISMYAKCGEIRNAYRIFSQMISHDLISWNSMIMGFSHHGLANEALEVFEAMVDSGTHPNS 500

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+ VL+ C+HA ++  G  +F  MS V+ V+P LEHY C+V+LL RAG ++EAE+ I 
Sbjct: 501 VTFLGVLSACSHAGLINQGWEIFNAMSDVFAVQPGLEHYICMVNLLGRAGKLKEAEELI- 559

Query: 325 EKMGGLGGGDANVWGALLSACRIYGK-IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
             +G     +  +WGALL  C    K  ++  R   ++ E+   +   HVL  NIY  +G
Sbjct: 560 --LGLPLERNHAIWGALLGVCSFSEKNADIAKRAATRILELDPLNAPAHVLLCNIYAASG 617

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
             +E +K+RK +   G+KK PGCS I +NG V  FL+GD    QA ++  ++  F
Sbjct: 618 QHIEEHKLRKEMGLKGVKKVPGCSWIVLNGRVHVFLSGDKPRLQAKDMLSLLFQF 672



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 145/333 (43%), Gaps = 41/333 (12%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           +M  ARALFD+  DR+V+TWT+MV GY + G+ E    LF  MP+RN VSW+A++  ++ 
Sbjct: 149 RMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMPKRNIVSWTAMIGGFTW 208

Query: 141 ISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACAHLG-----------AITQGLWVHSY 188
              +++ L LF +M+    + PN    +S+  ACA LG            IT+GL    Y
Sbjct: 209 NGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDNDDY 268

Query: 189 AKR-------------------YHLEKN-----VILATAVVDMYSKCGHVHSALSVFEGI 224
             R                   Y   KN     V     +++ Y + G +  A ++F+ +
Sbjct: 269 DGRLSKGLICMYSSIGFMDYAHYIFNKNSNYYVVQSCNYMINGYIRIGLLDKAQNLFDTM 328

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             +D   W +MI G  + G+  ++  LF  M     +     +  +++     ++  +  
Sbjct: 329 PVRDKITWTSMIDGYLVIGNVSEACSLFLYM----PEKDAVAWTTMISGHVRNELFAEAT 384

Query: 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            LF  M    GV P    YA +         +++  +        L   D  +  +L+S 
Sbjct: 385 YLFSEM-LTQGVRPLSSTYAILFGAAGAVASLDQGRQLHAMLTKTLSDNDLILENSLISM 443

Query: 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
               G+I    R++ ++    +  +++ ++ ++
Sbjct: 444 YAKCGEIRNAYRIFSQMISHDLISWNSMIMGFS 476



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 117/252 (46%), Gaps = 37/252 (14%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SLL  YS    +  ARALFD  P+R+ V++  ++ G  + G    A +LFE+MPERN V
Sbjct: 14  TSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKLFEEMPERNVV 73

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQE----------VGMKPN---ESGLVSVLTACAHL 176
           SW++++   +      E  SLF +M +          VG+  N   E+  +    +    
Sbjct: 74  SWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVGLIRNGDLEAARMVFDESPVKN 133

Query: 177 GAITQGLWVHSYAKRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGIS 225
            A   G+ +  YA+   +E           +NVI  T++V  Y + G V     +F  + 
Sbjct: 134 AASWNGM-IAGYAENGRMEEARALFDEMEDRNVITWTSMVSGYCRAGEVEEGYHLFRTMP 192

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCT--------- 275
            ++  +W AMI G   NG  + +L LF  M + +   P   TF+++   C          
Sbjct: 193 KRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGADITPNIETFISLAYACAGLGFHRLGK 252

Query: 276 --HAKMVRDGLN 285
             HA+++ +GL+
Sbjct: 253 QLHARLITEGLD 264



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 130/279 (46%), Gaps = 18/279 (6%)

Query: 91  KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL 150
           +SP   +V WT+++  Y + G  + AR LF+ MPERNAVS++A+++   +     E + L
Sbjct: 4   RSPLSRIVYWTSLLSKYSRSGFVDEARALFDIMPERNAVSYNALLSGLLQCGRLSEAMKL 63

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210
           F +M E     N     S+L   A  G I +   +         ++NV+   A++    +
Sbjct: 64  FEEMPE----RNVVSWTSMLCGLADAGKICEAKSLFEEMP----DRNVVSWNAMIVGLIR 115

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
            G + +A  VF+    K+A +WN MI+G A NG  +++  LFD M          T+ ++
Sbjct: 116 NGDLEAARMVFDESPVKNAASWNGMIAGYAENGRMEEARALFDEMEDRNV----ITWTSM 171

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEKMGG 329
           ++    A  V +G +LF  M      +  +  +  ++      G  E+A   F+E K G 
Sbjct: 172 VSGYCRAGEVEEGYHLFRTMP-----KRNIVSWTAMIGGFTWNGFYEDALLLFLEMKRGA 226

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
               +   + +L  AC   G   +G ++  +L   G+ +
Sbjct: 227 DITPNIETFISLAYACAGLGFHRLGKQLHARLITEGLDN 265



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 12/135 (8%)

Query: 123 MPERNAVS----WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           MP+R+ +S    W+++++ YSR     E  +LF  M E     N     ++L+     G 
Sbjct: 1   MPKRSPLSRIVYWTSLLSKYSRSGFVDEARALFDIMPE----RNAVSYNALLSGLLQCGR 56

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +++ + +         E+NV+  T+++   +  G +  A S+FE + +++  +WNAMI G
Sbjct: 57  LSEAMKLFEEMP----ERNVVSWTSMLCGLADAGKICEAKSLFEEMPDRNVVSWNAMIVG 112

Query: 239 VAMNGDAKKSLELFD 253
           +  NGD + +  +FD
Sbjct: 113 LIRNGDLEAARMVFD 127


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 144/378 (38%), Positives = 219/378 (57%), Gaps = 6/378 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDK--SP-DRDVVTWTTMVDGYGKMGDFENARELFEKMPER 126
           ++LL  Y    +   A  LF    SP D DVV+WTTMV G  ++G  ++AR+LF+ MPER
Sbjct: 131 NALLAAYLANGRADLASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKLFDGMPER 190

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           N +SW+A+++ Y +   F + L +F QM+ +G++ N     S + AC   G + +G  VH
Sbjct: 191 NLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVH 250

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
            + ++  +  +  LATAVVDMY KCG V  A  VF+ +  K   +WN MI G+A++G  K
Sbjct: 251 RWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCK 310

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
            ++ELF  M +    P + T V VLT C H  MV DG N F  +   YG+EP++EHY C+
Sbjct: 311 DAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPKMEHYGCM 370

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           VDL  RAG+++EA+K I++        D  V GAL  AC+I+  +++G  +  ++ E+  
Sbjct: 371 VDLFGRAGLLDEAKKVIDDMP---MEPDIGVLGALFGACKIHRDLDLGEAIGWRVIELDP 427

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
            +   +VL  N+   AG  ++  KVR+L+ E  + K+ G SVIE++G V EF  G   HA
Sbjct: 428 QNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGSLCHA 487

Query: 427 QAGEIYRVIHSFLKMSNL 444
           Q  EI+  +   ++   L
Sbjct: 488 QEKEIFAAVKDMMRKIRL 505


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/422 (33%), Positives = 227/422 (53%), Gaps = 35/422 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  ML +  EP+ +T+  ++KAC     L N GM +H  ++K G G D FV  +L     
Sbjct: 467 FASMLRLRMEPDQFTYGSVLKACSSQQAL-NSGMEIHNRIIKSGLGLDSFVGGAL----- 520

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     +D Y K G  E A+++ +++ ++  VSW+AI+A 
Sbjct: 521 --------------------------IDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAG 554

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           ++ +   ++  S F +M ++ +KP+      VL ACA+L ++  G  +H    +  L  +
Sbjct: 555 FTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSD 614

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + + +VDMYSKCG++  +  VFE   NKD   WNAMI G A +G  +++L  F+RM  
Sbjct: 615 VYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQL 674

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +P   TFV++L  C H   +  GL+ F  M   YG+EPQ+EHY+C++D++ R+G + 
Sbjct: 675 ENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRIS 734

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA K I+E        DA +W  LLS C+I+G IE+  +    + ++   D S  +L  N
Sbjct: 735 EALKLIQEMP---FEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSN 791

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           IY +AG   + +++RK++    +KK+PGCS IEV   V  FL G+  H +  EIY+++  
Sbjct: 792 IYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAFLVGNKTHPRYEEIYKILSV 851

Query: 438 FL 439
            L
Sbjct: 852 LL 853



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 151/295 (51%), Gaps = 9/295 (3%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           TF  +I+ C     L+  G   HA ++  GF  D ++ + L++ Y     +  A  +F+K
Sbjct: 45  TFSHIIQECSDYNSLKP-GKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEK 103

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
              RDV+++ TM+ GY   G+   A E F   P+R+ VSW+++++ + +  + ++ + +F
Sbjct: 104 MSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVF 163

Query: 152 RQM---QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
             M   +EVG   +++    VL AC+ L     G+ VH    R    K+V+  +A++DMY
Sbjct: 164 LDMGRSEEVGF--DQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMY 221

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KC  +  +L +F  I  K+   W+A+I+G   N +    LELF  M K G   +++ + 
Sbjct: 222 AKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYA 281

Query: 269 AVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           +V  +C     ++ G  L  + +   +G +  +      +D+ A+ G + +A++ 
Sbjct: 282 SVFRSCAGLSALKVGTQLHAHALKCDFGSDITVG--TATLDMYAKCGSLADAQRI 334



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 188/437 (43%), Gaps = 74/437 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDM---LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
           M+ G++Q    + S+  +LDM    ++GF+    TF  ++KAC +L      G+ VH  +
Sbjct: 146 MLSGFLQNGECRKSIDVFLDMGRSEEVGFDQT--TFAVVLKACSVLED-GGLGIQVHGLI 202

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           V+ GF                                +DVVT + ++D Y K    +++ 
Sbjct: 203 VRMGFY-------------------------------KDVVTGSALLDMYAKCKRLDDSL 231

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ++F ++P +N V WSAI+A   +  +    L LF++MQ+VG+  ++S   SV  +CA L 
Sbjct: 232 KIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLS 291

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+  G  +H++A +     ++ + TA +DMY+KCG +  A  +F  +       +NA+I 
Sbjct: 292 ALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIV 351

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE--------- 288
           G   N    ++L+ F  ++KSG    E +     + C   K   DG  L           
Sbjct: 352 GCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRS 411

Query: 289 ------NMSAVYGVEPQLEHYACVVDLLARAGMV---------------EEAEKFIEEKM 327
                 ++  +YG    L    C+ D + R   V               EE        +
Sbjct: 412 NICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASML 471

Query: 328 GGLGGGDANVWGALLSACR----IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
                 D   +G++L AC     +   +E+ NR+ +  + +G+  F    L  ++Y + G
Sbjct: 472 RLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK--SGLGLDSFVGGAL-IDMYCKCG 528

Query: 384 WDMEANKVRKLISETGM 400
              EA K+   I +  M
Sbjct: 529 MIEEAKKIHDRIEQQTM 545



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 127/253 (50%), Gaps = 17/253 (6%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++    +++D YGK      A  +F++M  R+AVSW+A++AA+ +  + +E L+LF  M 
Sbjct: 412 NICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASML 471

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
            + M+P++    SVL AC+   A+  G+ +H+   +  L  +  +  A++DMY KCG + 
Sbjct: 472 RLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIE 531

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  + + I  +   +WNA+I+G  +   ++ +   F  M+K   +P   T+  VL  C 
Sbjct: 532 EAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACA 591

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACV------VDLLARAGMVEEAEKFIEEKMGG 329
           +   V  G         ++G   +LE ++ V      VD+ ++ G ++++    E+    
Sbjct: 592 NLASVGLG-------KQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKA--- 641

Query: 330 LGGGDANVWGALL 342
               D   W A++
Sbjct: 642 -PNKDFVTWNAMI 653


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 231/431 (53%), Gaps = 52/431 (12%)

Query: 18  YLDMLDMG-FEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           Y  ML+ G   P+ +TFP ++KAC  I G  E  G  VH  +VK GFG D +V + L+  
Sbjct: 115 YRKMLERGESSPDKHTFPFVLKACAYIFGFSE--GKQVHCQIVKHGFGGDVYVNNGLIHL 172

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y                               G  G  + AR++F++MPER+ VSW++++
Sbjct: 173 Y-------------------------------GSCGCLDLARKVFDEMPERSLVSWNSMI 201

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR---Y 192
            A  R  ++   L LFR+MQ    +P+   + SVL+ACA LG+++ G W H++  R    
Sbjct: 202 DALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDV 260

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            +  +V++  ++++MY KCG +  A  VF+G+  +D  +WNAMI G A +G A++++  F
Sbjct: 261 DVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFF 320

Query: 253 DRMV--KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           DRMV  +   +P   TFV +L  C H   V  G   F+ M   Y +EP LEHY C+VDL+
Sbjct: 321 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 380

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDF 369
           ARAG + EA   I+  M      DA +W +LL AC   G  +E+   + R +      + 
Sbjct: 381 ARAGYITEA---IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNE 437

Query: 370 ST-------HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           S+       +VL   +Y  A    +   VRKL+SE G++K+PGCS IE+NG+  EF AGD
Sbjct: 438 SSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGD 497

Query: 423 NRHAQAGEIYR 433
             H Q  +IY+
Sbjct: 498 TSHPQTKQIYQ 508



 Score = 44.3 bits (103), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 39/222 (17%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEK---NVILATAVVDMYSKCGHVHSALSVFEGI 224
           +VL  C+ +  + Q   +H++  R    +    + L   ++ + S    V+ A  VF+ I
Sbjct: 30  TVLQTCSDMSQLKQ---LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSI 86

Query: 225 SNKDAGAWNAMISGVAMNGDAK-KSLELFDRMVKSG-TQPTETTFVAVLTTC-------- 274
            N  +  WN +I   A +   K ++  L+ +M++ G + P + TF  VL  C        
Sbjct: 87  ENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSE 146

Query: 275 ---THAKMVRDGL--NLFEN--MSAVYGV---------------EPQLEHYACVVDLLAR 312
               H ++V+ G   +++ N  +  +YG                E  L  +  ++D L R
Sbjct: 147 GKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVR 206

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            G  + A +   E M      D     ++LSAC   G + +G
Sbjct: 207 FGEYDSALQLFRE-MQRSFEPDGYTMQSVLSACAGLGSLSLG 247


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 231/431 (53%), Gaps = 52/431 (12%)

Query: 18  YLDMLDMG-FEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           Y  ML+ G   P+ +TFP ++KAC  I G  E  G  VH  +VK GFG D +V + L+  
Sbjct: 138 YRKMLERGESSPDKHTFPFVLKACAYIFGFSE--GKQVHCQIVKHGFGGDVYVNNGLIHL 195

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y                               G  G  + AR++F++MPER+ VSW++++
Sbjct: 196 Y-------------------------------GSCGCLDLARKVFDEMPERSLVSWNSMI 224

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR---Y 192
            A  R  ++   L LFR+MQ    +P+   + SVL+ACA LG+++ G W H++  R    
Sbjct: 225 DALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDV 283

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            +  +V++  ++++MY KCG +  A  VF+G+  +D  +WNAMI G A +G A++++  F
Sbjct: 284 DVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFF 343

Query: 253 DRMV--KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           DRMV  +   +P   TFV +L  C H   V  G   F+ M   Y +EP LEHY C+VDL+
Sbjct: 344 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 403

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDF 369
           ARAG + EA   I+  M      DA +W +LL AC   G  +E+   + R +      + 
Sbjct: 404 ARAGYITEA---IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNE 460

Query: 370 ST-------HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           S+       +VL   +Y  A    +   VRKL+SE G++K+PGCS IE+NG+  EF AGD
Sbjct: 461 SSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGD 520

Query: 423 NRHAQAGEIYR 433
             H Q  +IY+
Sbjct: 521 TSHPQTKQIYQ 531



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 39/225 (17%)

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKR--YHLEK-NVILATAVVDMYSKCGHVHSALSVFE 222
           + S+   C+ +  + Q   +H++  R  Y  E   + L   ++ + S    V+ A  VF+
Sbjct: 51  IFSLAETCSDMSQLKQ---LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 107

Query: 223 GISNKDAGAWNAMISGVAMNGDAK-KSLELFDRMVKSG-TQPTETTFVAVLTTC------ 274
            I N  +  WN +I   A +   K ++  L+ +M++ G + P + TF  VL  C      
Sbjct: 108 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167

Query: 275 -----THAKMVRDGL--NLFEN--MSAVYGV---------------EPQLEHYACVVDLL 310
                 H ++V+ G   +++ N  +  +YG                E  L  +  ++D L
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 227

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            R G  + A +   E M      D     ++LSAC   G + +G 
Sbjct: 228 VRFGEYDSALQLFRE-MQRSFEPDGYTMQSVLSACAGLGSLSLGT 271


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 158/509 (31%), Positives = 255/509 (50%), Gaps = 73/509 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI+ Y++      S   Y D+  +  F P+N+TF  L K+C +   +   G+ +H+ + +
Sbjct: 48  MIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQ-GLQLHSQIWR 106

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTT----------------- 102
           FGF  D +V + +++ Y+   KMG AR  FD+ P R  V+WT                  
Sbjct: 107 FGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKL 166

Query: 103 ---------------MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF--- 144
                          M+DG+ K GD  +AR LF++M  +  ++W+ ++  Y  I D    
Sbjct: 167 FDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAA 226

Query: 145 ----------------------------KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAH 175
                                       +E + LF++MQ    + P++  ++SVL A + 
Sbjct: 227 RKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISD 286

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
            GA++ G W H + +R  L+K V + TA++DMYSKCG +  A  +F+ +  K   +WNAM
Sbjct: 287 TGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAM 346

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G A+NG+A+ +L+LF  M+    +P E T +AV+T C H  +V +G   F  M  + G
Sbjct: 347 IHGYALNGNARAALDLFVTMMIE-EKPDEITMLAVITACNHGGLVEEGRKWFHVMREM-G 404

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           +  ++EHY C+VDLL RAG ++EAE  I        G    +  + LSAC  Y  IE   
Sbjct: 405 LNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNG---IILSSFLSACGQYKDIERAE 461

Query: 356 RVWRKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           R+ +K  E+   +   +VL  N+Y  +  WD +   V+ ++ +   KK+ GCS+IE+N +
Sbjct: 462 RILKKAVELEPQNDGNYVLLRNLYAADKRWD-DFGMVKNVMRKNQAKKEVGCSLIEINYI 520

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443
           V EF++GD  H     I+ V+   L   N
Sbjct: 521 VSEFISGDTTHPHRRSIHLVLGDLLMHMN 549



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 31/175 (17%)

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           +G AR LFD+ P RD                              ++   ++++ AY   
Sbjct: 26  IGYARKLFDQRPQRD------------------------------DSFLSNSMIKAYLET 55

Query: 142 SDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
             + +  +L+R + +E    P+     ++  +C+    + QGL +HS   R+    ++ +
Sbjct: 56  RQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYV 115

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           +T VVDMY+K G +  A + F+ + ++   +W A+ISG    G+   + +LFD+M
Sbjct: 116 STGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 234/431 (54%), Gaps = 36/431 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ Q N P+ ++  +  ML +GF+PN++T   L+KA      L+  G  +HA  +K+
Sbjct: 160 LIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDP-GTQLHAFCLKY 218

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    +V S+L                               VD Y + G  + A+  F
Sbjct: 219 GYQSSVYVGSAL-------------------------------VDMYARCGHMDAAQLAF 247

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP ++ VSW+A+++ ++R  + +  L L  +MQ    +P      SVL+ACA +GA+ 
Sbjct: 248 DGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALE 307

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG WVH++  +  L+    +   ++DMY+K G +  A  VF+ +   D  +WN M++G A
Sbjct: 308 QGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCA 367

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  K++L+ F++M++ G +P E +F+ VLT C+H+ ++ +GL  FE M   Y VEP +
Sbjct: 368 QHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDV 426

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY   VDLL R G+++ AE+FI E         A VWGALL ACR++  +E+G     +
Sbjct: 427 PHYVTFVDLLGRVGLLDRAERFIREMP---IEPTAAVWGALLGACRMHKNMELGVYAAER 483

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
             E+   D    +L  NIY  AG   +  KVRK++ E+G+KK+P CS +E+   V  F+A
Sbjct: 484 AFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVA 543

Query: 421 GDNRHAQAGEI 431
            D  H +  EI
Sbjct: 544 NDETHPRIKEI 554



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 171/343 (49%), Gaps = 59/343 (17%)

Query: 19  LDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           LD++  G   P+   +  L+K C  LG +E  G  VHAH+V   F ++  V+ +++    
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQ-GRIVHAHLVDSHFLDNHLVLQNII---- 129

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     V+ Y K G  ++AR +F++MP ++ V+W+A++A 
Sbjct: 130 --------------------------VNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAG 163

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +S+ +  ++ L LF QM  +G +PN   L S+L A      +  G  +H++  +Y  + +
Sbjct: 164 FSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSS 223

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + +A+VDMY++CGH+ +A   F+G+  K   +WNA+ISG A  G+ + +L L  +M +
Sbjct: 224 VYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQR 283

Query: 258 SGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
              QPT  T+ +VL+ C            HA M++ GL L     A  G          +
Sbjct: 284 KNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI----AFIG--------NTL 331

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +D+ A+AG +++A++  +     L   D   W  +L+ C  +G
Sbjct: 332 LDMYAKAGSIDDAKRVFDR----LVKPDVVSWNTMLTGCAQHG 370


>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
 gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
          Length = 517

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 144/446 (32%), Positives = 230/446 (51%), Gaps = 43/446 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           M+RGY  A  P  +   Y  M +     P+ +TF  L++AC  L P    G  VH  VVK
Sbjct: 70  MVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLLRACAGL-PGSRAGRQVHGAVVK 128

Query: 60  FGFGEDPFVVSSLLEFYSLVHK-------------------------------MGTARAL 88
            GF +D +V ++L+  ++                                   M  AR +
Sbjct: 129 LGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAAARKM 188

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           FD+   +D+V W  M+  Y K G+ ENARELF++ PE++ VSW+ I+  Y+     K  L
Sbjct: 189 FDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGMLKHAL 248

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK----NVILATAV 204
            +F +M+  G  P+E+ +VS+L+ CA+ G +  G  +H    + HLE+    ++++  A+
Sbjct: 249 EVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIH---HQLHLERRPWISIVVGNAL 305

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           V MY+KCG +H+A+  F  + + D   WN++I G+A +G A++S+  F +M++    P E
Sbjct: 306 VSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPNE 365

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            +F+ VL  C+HA +V DG   F  M   YG+EP   HY+C+VD+L RAG+++EA   + 
Sbjct: 366 ISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIVS 425

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
                     A VW  LL ACR +G + +G  V  KL  M     + +VL   IY  +G 
Sbjct: 426 NMR---CEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASSGE 482

Query: 385 DMEANKVRKLISETGMKKKPGCSVIE 410
            +     R+ +   G++K  G + I+
Sbjct: 483 WLGVETERRSMDRRGIRKAAGYAQID 508



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/318 (21%), Positives = 133/318 (41%), Gaps = 36/318 (11%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-----NAVSWSAIM 135
           +MG AR +FD  P  D+     MV GY   G   +A  ++ +M E      +A ++  ++
Sbjct: 48  RMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLRPDAFTFCYLL 107

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPN---ESGLVSVLTACAHLGAITQGL--------- 183
            A + +   +    +   + ++G   +    + L+++   C  L   +  L         
Sbjct: 108 RACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDVV 167

Query: 184 -W---VHSYAKRYHL-----------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
            W   +  +A R  +            K+++    ++  Y+K G + +A  +F+    KD
Sbjct: 168 AWSAVIAGHAARGDMAAARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKD 227

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             +WN +I+G A  G  K +LE+FD M  +G  P E T V++L+ C +  ++  G  +  
Sbjct: 228 VVSWNTIITGYAAQGMLKHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHH 287

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            +         +     +V + A+ G +  A     E    +   D   W +++     +
Sbjct: 288 QLHLERRPWISIVVGNALVSMYAKCGDLHTA----VEGFNTMKDTDVWTWNSVIGGLAFH 343

Query: 349 GKIEVGNRVWRKLAEMGI 366
           G+ E   R ++K+ E  I
Sbjct: 344 GQAEQSVRFFKKMLEKRI 361



 Score = 40.4 bits (93), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 11/194 (5%)

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
           A+  HL +  +L + V     + G+   A  VF+GI   D    NAM+ G A  G    +
Sbjct: 29  ARLQHLRE--LLLSCVATFRGRMGY---ARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDA 83

Query: 249 LELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
             ++ RM + S  +P   TF  +L  C      R G  +   +  +  ++      A ++
Sbjct: 84  FAVYRRMTEASRLRPDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNA-LI 142

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           ++ A+ G +  A   ++E     G GD   W A+++     G +    +++ +     I 
Sbjct: 143 NMFAKCGDLRVASVLLDEA----GEGDVVAWSAVIAGHAARGDMAAARKMFDECTHKDIV 198

Query: 368 DFSTHVLSYNIYKE 381
            ++  + +Y  + E
Sbjct: 199 CWNVMLGAYAKHGE 212


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 135/359 (37%), Positives = 208/359 (57%), Gaps = 4/359 (1%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           +M  A+ LFD+ P+RD+V+W  M+DGY K G  + AR LF++MPER+ V+++A+M  Y +
Sbjct: 273 RMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAMMGGYVQ 332

Query: 141 ISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
                E L +F  MQ  G    + + L+  L+A A LG I +G+ +H + +      +  
Sbjct: 333 NGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIGFSLDGR 392

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L  A++DMYSKCG + +A+ VFE I  K    WNA+I G+A++G  + + +    M +  
Sbjct: 393 LGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMR 452

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P + TF+ +L  C HA +V++G+  FE M  V+ VEP+L+HY C+VD+L RAG +EEA
Sbjct: 453 VEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEA 512

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
           + F+EE        D  +W +LLSAC+ +    VG  V   L  +     S++VL+ N+Y
Sbjct: 513 KNFVEEM--PFEPNDV-IWRSLLSACKTHESFNVGQPVAENLMRLDSPSPSSYVLASNMY 569

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
              G   +  KVR ++ +  +KK PGCS IE+ G V  F   D  H Q   IY ++ S 
Sbjct: 570 AGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVYAFFVQDKSHPQFSGIYSILDSL 628



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 173/356 (48%), Gaps = 24/356 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ Y   + PK +++    ML+ G   + +T   ++KAC  +G ++  GM +H  + K 
Sbjct: 98  IIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKE-GMQIHGLLKKL 156

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG D F+ + L+ FY     +  A  +FD+ P RD V++ +M+DGY K G  + AR +F
Sbjct: 157 EFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARVVF 216

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEV-LSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + +P  ERN +SW++++  Y++  D   V   LF +M E  +        S++  C   G
Sbjct: 217 DCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLISWN----SMIDGCVKCG 272

Query: 178 AI--TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
            +   QGL+           ++++    ++D Y+K G V  A S+F+ +  +D  A+NAM
Sbjct: 273 RMEDAQGLFDRMP------NRDIVSWANMIDGYAKNGRVDIARSLFDEMPERDVVAYNAM 326

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTET-TFVAVLTTCTHAKMVRDGLNLFENMSAV- 293
           + G   NG   ++L +F  M   G    +  T +  L+       +  G+ +   +  + 
Sbjct: 327 MGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIHRFIEEIG 386

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           + ++ +L     ++D+ ++ G +E A    E     +     + W A++    I+G
Sbjct: 387 FSLDGRLG--VALIDMYSKCGSIENAMMVFEN----IKEKSVDHWNAIIGGLAIHG 436



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 29/266 (10%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+AI+  YS   D KE + L   M E G   ++  L  VL AC+ +G + +G+ +H   K
Sbjct: 95  WNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQIHGLLK 154

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +     ++ L   ++  Y KCG +  A  VF+ +  +D+ ++N+MI G    G    +  
Sbjct: 155 KLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVKGGRIDLARV 214

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL----NLFENMSAVYGVEPQLEHYACV 306
           +FD +        E   ++  +         DG+     LF  M      E  L  +  +
Sbjct: 215 VFDCI-----PLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMP-----ERDLISWNSM 264

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +D   + G +E+A+   +     +   D   W  ++      G++++   ++ ++ E   
Sbjct: 265 IDGCVKCGRMEDAQGLFDR----MPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPE--- 317

Query: 367 TDFSTHVLSYNI----YKEAGWDMEA 388
                 V++YN     Y + G+ MEA
Sbjct: 318 ----RDVVAYNAMMGGYVQNGYCMEA 339



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 37/242 (15%)

Query: 1   MIRGYMQANF--PKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           M+ GY+Q  +    L +F Y    D  F  +N T    + A   LG ++  G+ +H  + 
Sbjct: 326 MMGGYVQNGYCMEALGIF-YGMQSDGNFLLDNATLLIALSAIAQLGHIDK-GVAIHRFIE 383

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF              SL  ++G A                 ++D Y K G  ENA  
Sbjct: 384 EIGF--------------SLDGRLGVA-----------------LIDMYSKCGSIENAMM 412

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +FE + E++   W+AI+   +     +       +M+ + ++P++   + +L AC H G 
Sbjct: 413 VFENIKEKSVDHWNAIIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGL 472

Query: 179 ITQGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMI 236
           + +G+      +R H +E  +     +VD+  + GH+  A +  E +    +   W +++
Sbjct: 473 VKEGMMCFELMRRVHKVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLL 532

Query: 237 SG 238
           S 
Sbjct: 533 SA 534


>gi|255549842|ref|XP_002515972.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544877|gb|EEF46392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 129/329 (39%), Positives = 206/329 (62%), Gaps = 4/329 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY ++  P  S+  ++ ML +G  P+  T+P L+KA   L   E  G  +HAH++K 
Sbjct: 85  VIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKASARLLKRE-LGFSIHAHIIKH 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F+ +SL+  Y+    +  AR +FD  P +++V+W +MVDG  K G+   AR+LF
Sbjct: 144 GFESDRFISNSLVHMYASFGDISCARYVFDGMPVKNLVSWNSMVDGSAKCGNMVLARQLF 203

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP+R+ +SWS+++  Y +  D+ + + +F +M+  G KPNE  +VSVL ACAHLGA+ 
Sbjct: 204 DLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPKPNEVTMVSVLCACAHLGALD 263

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAGAWNAMISG 238
           +G  +H Y     L   ++L T++VDMY+KCG ++ A  VF GI  +  D   WNAMI G
Sbjct: 264 KGRMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAFDVFRGIPAELSDVLLWNAMIGG 323

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G  K+SL+LF  M   G +P E T++++L  C H  +V++    F+ +   +G+  
Sbjct: 324 LATHGLVKESLDLFKEMNFVGVKPDEITYLSLLHACAHGGLVKEAWYFFDCLGK-HGMTL 382

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           ++EHYAC+VD++ARAG + +A +F+   M
Sbjct: 383 KIEHYACIVDVMARAGQIAKAYQFLSRNM 411



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/453 (21%), Positives = 182/453 (40%), Gaps = 100/453 (22%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA V+  G  +D   VS +L F +L               D   + ++  V        
Sbjct: 33  IHALVITLGLSQDEPFVSKILSFSAL--------------SDSGNINYSCWV-------- 70

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                 LF  +      +W+ ++  YS+  +    +S+F QM +VG+ P+      ++ A
Sbjct: 71  ------LFSLL-NPTIFNWNTVIRGYSKSKNPNGSISVFIQMLKVGVFPDYLTYPFLVKA 123

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
            A L     G  +H++  ++  E +  ++ ++V MY+  G +  A  VF+G+  K+  +W
Sbjct: 124 SARLLKRELGFSIHAHIIKHGFESDRFISNSLVHMYASFGDISCARYVFDGMPVKNLVSW 183

Query: 233 NAMISGVA-------------------------------MNGDAKKSLELFDRMVKSGTQ 261
           N+M+ G A                                NGD   ++ +FD+M  SG +
Sbjct: 184 NSMVDGSAKCGNMVLARQLFDLMPDRDVLSWSSLIDGYVKNGDYGDAMVVFDKMRVSGPK 243

Query: 262 PTETTFVAVLTTCTHAKMVRDG----------------------LNLFENMSAV------ 293
           P E T V+VL  C H   +  G                      ++++    A+      
Sbjct: 244 PNEVTMVSVLCACAHLGALDKGRMMHHYVIDNKLPLTLVLCTSLVDMYAKCGAINEAFDV 303

Query: 294 -YGVEPQLEH---YACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIY 348
             G+  +L     +  ++  LA  G+V+E+    +E M  +G   D   + +LL AC   
Sbjct: 304 FRGIPAELSDVLLWNAMIGGLATHGLVKESLDLFKE-MNFVGVKPDEITYLSLLHACAHG 362

Query: 349 GKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAG-----WDMEANKVRKLISETGMKK 402
           G ++     +  L + G+T     +    ++   AG     +   +  +RK +   G++K
Sbjct: 363 GLVKEAWYFFDCLGKHGMTLKIEHYACIVDVMARAGQIAKAYQFLSRNMRKAMERMGVRK 422

Query: 403 KPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            PG S + +N  +  F+A D  H  +  IY ++
Sbjct: 423 SPGYSFVAINESLHRFIAHDKTHPSSELIYMML 455


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 153/445 (34%), Positives = 237/445 (53%), Gaps = 37/445 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY ++  P  ++  Y  M     EP+ +T+P L+KA   L  +   G  VH+  ++ 
Sbjct: 111 MIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVRE-GEKVHSIAIRN 169

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV                                 T+V  Y   G  E+A +LF
Sbjct: 170 GFESLVFV-------------------------------QNTLVHMYAACGHAESAHKLF 198

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M ERN V+W++++  Y+      E L+LFR+M   G++P+   +VS+L+ACA LGA+ 
Sbjct: 199 ELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALA 258

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H Y  +  L+ N+    A++D+Y+KCG +  A  VF+ +  K   +W ++I G+A
Sbjct: 259 LGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLA 318

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG  K++LELF  + + G  P+E TFV VL  C+H  MV +G + F+ M   YG+ P++
Sbjct: 319 VNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKI 378

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL RAG+V++A +FI+         +A VW  LL AC I+G + +G     +
Sbjct: 379 EHYGCMVDLLGRAGLVKQAHEFIQNMP---MQPNAVVWRTLLGACTIHGHLALGEVARAQ 435

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L ++       +VL  N+Y  E  W  + +KVR+ +   G+KK PG S++E+   + EF+
Sbjct: 436 LLQLEPKHSGDYVLLSNLYASEQRWS-DVHKVRRTMLREGVKKTPGHSLVELRNRLHEFV 494

Query: 420 AGDNRHAQAGEIYRVIHSFLKMSNL 444
            GD  H Q  EIY  +    K+  L
Sbjct: 495 MGDRSHPQTEEIYVKLAEITKLLKL 519



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 106/210 (50%), Gaps = 1/210 (0%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A ++F ++   N  +W+ ++  Y+   +    L L+RQM    ++P+      +L A A 
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L  + +G  VHS A R   E  V +   +V MY+ CGH  SA  +FE ++ ++   WN++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A+NG   ++L LF  M   G +P   T V++L+ C     +  G      M  V G
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKV-G 271

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           ++  L     ++DL A+ G + +A K  +E
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDE 301



 Score = 46.6 bits (109), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 89/222 (40%), Gaps = 37/222 (16%)

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +  + S C  +  A  +F  I N +   WN MI G A + +   +LEL+ +M  S  +P 
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 264 ETTFVAVLTTC-----------THAKMVRDGL-------NLFENMSAVYG---------- 295
             T+  +L               H+  +R+G        N   +M A  G          
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFE 199

Query: 296 --VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG--GDANVWGALLSACRIYGKI 351
              E  L  +  V++  A  G   EA     E   GL G   D     +LLSAC   G +
Sbjct: 200 LMAERNLVTWNSVINGYALNGRPNEALTLFREM--GLRGVEPDGFTMVSLLSACAELGAL 257

Query: 352 EVGNRVWRKLAEMGITDFSTHVLS--YNIYKEAGWDMEANKV 391
            +G R    + ++G+ D + H  +   ++Y + G   +A+KV
Sbjct: 258 ALGRRAHVYMVKVGL-DGNLHAGNALLDLYAKCGSIRQAHKV 298


>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
 gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
          Length = 581

 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 152/418 (36%), Positives = 229/418 (54%), Gaps = 15/418 (3%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFV-----HAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           P+++TFP ++     L  +      +     HAH          ++ ++  +  S V + 
Sbjct: 104 PDHFTFPRILPGAQPLHLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLASRVFRG 163

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           G   AL       DVV+WTTMV G  K+G  ++ARELF+ MPERN VSW+A+M+ Y +  
Sbjct: 164 GGGDAL-------DVVSWTTMVGGLVKLGRVDDARELFDGMPERNLVSWNAMMSGYVKTG 216

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            F + L +F +M+  G+  N     + + AC   GA+ +G  VH + +R  +E +  LAT
Sbjct: 217 RFLDALEVFDEMRARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSGIEMDDKLAT 276

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           AVVDMY KCG V  A  VFE +  +   +WN MI G A++G  + +L LF  M + G  P
Sbjct: 277 AVVDMYCKCGCVEEAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFGLMEREGVAP 336

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            + T V VLT C HA MV +G + F  +S  YG+ P++EHY C+VDL  RAG +EEA+K 
Sbjct: 337 DDVTLVNVLTACAHAGMVSEGRHYFNYISQRYGIVPKMEHYGCMVDLYGRAGQLEEAKKV 396

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I++        D  V GAL  A +I+G +++G  +  ++ E+   +   +VL  N+   A
Sbjct: 397 IQDMP---MEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATA 453

Query: 383 GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           G   +  +VR+L+ E  + K+ G SVIEV G V EF  G   H QA E+Y +    ++
Sbjct: 454 GRWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPQAEEVYAMARDMMR 511


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 231/431 (53%), Gaps = 52/431 (12%)

Query: 18  YLDMLDMG-FEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           Y  ML+ G   P+ +TFP ++KAC  I G  E  G  VH  +VK GFG D +V + L+  
Sbjct: 129 YRKMLERGESSPDKHTFPFVLKACAYIFGFSE--GKQVHCQIVKHGFGGDVYVNNGLIHL 186

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y                               G  G  + AR++F++MPER+ VSW++++
Sbjct: 187 Y-------------------------------GSCGCLDLARKVFDEMPERSLVSWNSMI 215

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR---Y 192
            A  R  ++   L LFR+MQ    +P+   + SVL+ACA LG+++ G W H++  R    
Sbjct: 216 DALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDV 274

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            +  +V++  ++++MY KCG +  A  VF+G+  +D  +WNAMI G A +G A++++  F
Sbjct: 275 DVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFF 334

Query: 253 DRMV--KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           DRMV  +   +P   TFV +L  C H   V  G   F+ M   Y +EP LEHY C+VDL+
Sbjct: 335 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 394

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDF 369
           ARAG + EA   I+  M      DA +W +LL AC   G  +E+   + R +      + 
Sbjct: 395 ARAGYITEA---IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNE 451

Query: 370 ST-------HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           S+       +VL   +Y  A    +   VRKL+SE G++K+PGCS IE+NG+  EF AGD
Sbjct: 452 SSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGD 511

Query: 423 NRHAQAGEIYR 433
             H Q  +IY+
Sbjct: 512 TSHPQTKQIYQ 522



 Score = 42.4 bits (98), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 39/225 (17%)

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKR--YHLEK-NVILATAVVDMYSKCGHVHSALSVFE 222
           + S+   C+ +  + Q   +H++  R  Y  E   + L   ++ + S    V+ A  VF+
Sbjct: 42  IFSLAETCSDMSQLKQ---LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 98

Query: 223 GISNKDAGAWNAMISGVAMNGDAK-KSLELFDRMVKSG-TQPTETTFVAVLTTC------ 274
            I N  +  WN +I   A +   K ++  L+ +M++ G + P + TF  VL  C      
Sbjct: 99  SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 158

Query: 275 -----THAKMVRDGL--NLFEN--MSAVYGV---------------EPQLEHYACVVDLL 310
                 H ++V+ G   +++ N  +  +YG                E  L  +  ++D L
Sbjct: 159 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 218

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            R G  + A +   E M      D     ++LSAC   G + +G 
Sbjct: 219 VRFGEYDSALQLFRE-MQRSFEPDGYTMQSVLSACAGLGSLSLGT 262


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  261 bits (666), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 156/417 (37%), Positives = 240/417 (57%), Gaps = 12/417 (2%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK-FG-FGEDPFVVSSLLEFYS 77
           +M  +   P+ YTF  L+  C +L      G  VH  V +  G FG +  +V+ L++ Y+
Sbjct: 209 EMRGVCVRPDEYTFVALLSGCSVLEDYR-IGRQVHGLVYRELGCFGGNVLLVNKLVDMYA 267

Query: 78  LVHKMGTARALFDK-SPDRDVVT-WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
              ++  A  +     P + VV  WT++V  Y   G+ + AR LF++M ER+ VSW+A++
Sbjct: 268 KCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVARRLFDQMGERDVVSWTAMI 327

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH-SYA-KRYH 193
           + YS    F+E L LF +++ +GMKP+E  +V+ L+ACA LGA+  G  +H  YA + + 
Sbjct: 328 SGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWT 387

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLEL 251
              N    +AVVDMY+KCG +  AL VF   S+  K    +N++ISG+A +G  + +  L
Sbjct: 388 CSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAKNL 447

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
           F+ M   G +P   TFVAVL+ C H  +V  G  LFE+M  VYGV P++EHY C+VDLL 
Sbjct: 448 FEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMFTVYGVSPEMEHYGCMVDLLG 507

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           RAG ++EA + I  KM      +A +W ALLSAC+++G + +      +L E+     + 
Sbjct: 508 RAGHLDEAHRLI-LKMP--FKANAVIWRALLSACKVHGDVALARVASYELVELQHDHGAG 564

Query: 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
           +V+  N+  +     EA  +RK I   G++K PG S +E+N  + +FLAGD  H +A
Sbjct: 565 YVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHKFLAGDKSHPEA 621



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 175/380 (46%), Gaps = 50/380 (13%)

Query: 1   MIRGYMQANFPKLSVFC-YLDMLDMGFEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVV 58
           +I+ Y Q + P    F  +  ML+    P+++TFP L+KAC  +L     FG  VH HV+
Sbjct: 86  IIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQFGFQVHCHVL 145

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GFG D FV ++LL FY     +  A  +FD+S  RD V++ TM++G+ + GD      
Sbjct: 146 RNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFARKGDVSGC-- 203

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
                                          +F +M+ V ++P+E   V++L+ C+ L  
Sbjct: 204 -----------------------------FRVFGEMRGVCVRPDEYTFVALLSGCSVLED 234

Query: 179 ITQGLWVHS--YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA--GAWNA 234
              G  VH   Y +      NV+L   +VDMY+KCG +  A +V   +    +   AW +
Sbjct: 235 YRIGRQVHGLVYRELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTS 294

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           ++S  A+ G+ K +  LFD+M +        ++ A+++  +HA   ++ L LF  +  + 
Sbjct: 295 LVSAYALRGEVKVARRLFDQMGERDV----VSWTAMISGYSHAGCFQEALELFVKLEGL- 349

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG-----GLGGGDANVWGALLSACRIYG 349
           G++P        +   AR G +E   +   +  G      +  G  +    + + C   G
Sbjct: 350 GMKPDEVAVVAALSACARLGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKC---G 406

Query: 350 KIEVGNRVWRKLAEMGITDF 369
            I++   V+RK ++   T F
Sbjct: 407 SIDIALDVFRKTSDDKKTTF 426



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 135/289 (46%), Gaps = 13/289 (4%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH-- 175
           LF ++   +   W+AI+ AYS+I S  +   SLF+ M    + P+      +L ACA+  
Sbjct: 71  LFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVL 130

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           + A   G  VH +  R     +V +  A+++ Y   G V +A  VF+    +D  ++N M
Sbjct: 131 ISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTM 190

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN---LFENMSA 292
           I+G A  GD      +F  M     +P E TFVA+L+ C+  +  R G     L      
Sbjct: 191 INGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYRELG 250

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
            +G    L +   +VD+ A+ G +  AE  +   +   G      W +L+SA  + G+++
Sbjct: 251 CFGGNVLLVNK--LVDMYAKCGRLVMAETVLS--VVKPGKSVVAAWTSLVSAYALRGEVK 306

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
           V  R++ ++ E  +  ++  +  Y+    AG   EA ++   +   GMK
Sbjct: 307 VARRLFDQMGERDVVSWTAMISGYS---HAGCFQEALELFVKLEGLGMK 352



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 108/279 (38%), Gaps = 45/279 (16%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL---SVFEGI 224
           S+L++C  +    Q ++ H      H   N+ L+T +   Y+      S     ++F  I
Sbjct: 19  SLLSSCKTMQQAHQ-IYAHIIVTGRH--NNLHLSTTLFTFYASSSSSQSLHHSHTLFTQI 75

Query: 225 SNKDAGAWNAMISGVA-MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC--------- 274
           +N D   WNA+I   + ++   +    LF  M+ S   P   TF  +L  C         
Sbjct: 76  TNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANVLISAPQ 135

Query: 275 ----THAKMVRDG-----------LNL---FENMSAVYGVEPQLEHYACV-----VDLLA 311
                H  ++R+G           LN    F ++   Y V  +     CV     ++  A
Sbjct: 136 FGFQVHCHVLRNGFGSDVFVNNALLNFYCGFGDVVNAYKVFDESFVRDCVSFNTMINGFA 195

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           R G V    +   E  G     D   + ALLS C +     +G +V   L    +  F  
Sbjct: 196 RKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQV-HGLVYRELGCFGG 254

Query: 372 HVLSYNIYKEAGWDMEANKVRKLISETGMK-KKPGCSVI 409
           +VL  N       DM A   R +++ET +   KPG SV+
Sbjct: 255 NVLLVNKLV----DMYAKCGRLVMAETVLSVVKPGKSVV 289


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 148/445 (33%), Positives = 240/445 (53%), Gaps = 29/445 (6%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q    + ++  +  M+  G EPN+ T   L+ AC  LG L   GM +HA+ +K 
Sbjct: 366 VIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQ-GMEIHAYSLK- 423

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                      LL   +     G    L         + +  ++D Y K   F+ AR +F
Sbjct: 424 ---------KCLLSLDNDFGGDGDGEDL---------MVYNALIDMYSKCRSFKAARSIF 465

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHL 176
           + +P  ERN V+W+ ++  Y++  D  + L +F +M  +   + PN   +  +L ACAHL
Sbjct: 466 DSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHL 525

Query: 177 GAITQGLWVHSYAKRYH-LEKNV-ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            A+  G  +H+Y  R+H  E +V  +A  ++DMYSKCG V +A +VF+ +  ++  +W +
Sbjct: 526 AALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTS 585

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           M+SG  M+G  K++L++FD+M K+G  P + +F+ +L  C+H+ MV  GLN F+ M   Y
Sbjct: 586 MMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDY 645

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            V    EHYACV+DLLAR G +++A K I+E         A +W ALLSACR++  +E+ 
Sbjct: 646 DVVASAEHYACVIDLLARCGRLDKAWKTIQEMP---MEPSAVIWVALLSACRVHSNVELA 702

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL  M   +  ++ L  NIY  A    +  ++R+L+ ++G+KK+PGCS ++    
Sbjct: 703 EYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKG 762

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
              F  GD  H  + EIY ++   +
Sbjct: 763 TASFFVGDRSHPLSPEIYSLLERLI 787



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 186/364 (51%), Gaps = 28/364 (7%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           ++ AC  L  L      +H++ ++ G   D FV ++L++ Y+    M  A  +F+    +
Sbjct: 265 ILPACASLKALPQIKE-IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLF 151
           DVV+W  MV GY + G+F  A ELFE M + N     ++WSA++A Y++    +E L  F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL------------EKNVI 199
           +QM   G +PN   ++S+L+ACA LGA++QG+ +H+Y+ +  L             ++++
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAG--AWNAMISGVAMNGDAKKSLELFDRMVK 257
           +  A++DMYSKC    +A S+F+ I  ++     W  MI G A  GD+  +L++F  M+ 
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 258 S--GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAG 314
                 P   T   +L  C H   +R G  +   ++  +  EP +   A C++D+ ++ G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG 563

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTH 372
            V+ A    +     +   +   W +++S   ++G+ +    ++ K+ + G    D S  
Sbjct: 564 DVDTARNVFD----SMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFL 619

Query: 373 VLSY 376
           VL Y
Sbjct: 620 VLLY 623



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 132/282 (46%), Gaps = 30/282 (10%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G +P+++T P  +KAC  L P    G  +H  +   GF  + FV ++L+  YS   
Sbjct: 140 MLRAGTKPDHFTLPYALKACGEL-PSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCG 198

Query: 81  KMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
            +  A  +FD+   +   DV++W ++V  + K  +   A ELF +M              
Sbjct: 199 SLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEM-------------- 244

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                      S+    +    + +   +V++L ACA L A+ Q   +HSYA R     +
Sbjct: 245 -----------SMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFAD 293

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             +  A++D Y+KCG ++ A+ VF  +  KD  +WNAM++G   +G+   + ELF+ M K
Sbjct: 294 AFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
                   T+ AV+         ++ L+ F+ M  + G EP 
Sbjct: 354 ENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM-ILDGSEPN 394



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 3/158 (1%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  Y   G  ++A  + E++    AV W+ ++  + +       + +  +M   G K
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   L   L AC  L +   G  +H        E NV +  A+V MYS+CG +  A  V
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 221 FEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRM 255
           F+ I+ K   D  +WN++++      + + +LELF  M
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEM 244



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 2/145 (1%)

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L T VV  Y  CG    ALSV E ++   A  WN ++      G   +++ +  RM+++G
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           T+P   T    L  C        G  L   +    G E  +     +V + +R G +E+A
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRAL-HGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 320 EKFIEEKMGGLGGGDANVWGALLSA 344
               +E +   G  D   W ++++A
Sbjct: 204 SLVFDE-ITRKGIDDVISWNSIVAA 227


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 143/420 (34%), Positives = 231/420 (55%), Gaps = 8/420 (1%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML +  +PN +TF  +I +   L  +   G  +HA  +K G     FV S++L+FY+ + 
Sbjct: 90  MLLLNIKPNEFTFATVIHSSTGLKNI-YLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLC 148

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
               AR  F+     +VV++TT++ GY K G  ++A +LF++MPERN VSW+A++  +S+
Sbjct: 149 SFEEARNAFEDIQKPNVVSYTTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQ 208

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
           +   +E +SLF +M   G  PN+S     +T+ A++ ++  G   H+ A +     +V +
Sbjct: 209 MGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFV 268

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             ++V  Y+KCG +  +L VF  + +++  +WNA+I G A NG  + ++  F+RM  +G 
Sbjct: 269 CNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGL 328

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +P   T + +L  C HA +V  G   F  M        + EHYAC+VDLL+R G ++EA 
Sbjct: 329 RPNSVTLLGLLCACNHAGLVEKGYMYFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAA 388

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
           KF+ +     G G    W ALL  C I+   E+ +   +K+  +   D S++V+  N Y 
Sbjct: 389 KFLHDLPFDPGTG---FWKALLGGCHIHSNAELSDLAAQKILALDPEDVSSYVMLSNAYS 445

Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            AG   + + +R+ + E G+K+ PGCS IEV   +  FL  D  H Q  EIY    SFLK
Sbjct: 446 AAGRWQQVSTIRREMKEKGLKRIPGCSWIEVRSKIHVFLNSDKNHHQKEEIY----SFLK 501



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 112/253 (44%), Gaps = 40/253 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G+ Q    + +V  +++ML  GF PN  TFP  I +   +  L   G   HA  VK 
Sbjct: 202 MVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFPCAITSAANMASL-GMGKSFHACAVKS 260

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D FV +SL+ FY+    M  +  +F++ PDR+ V+W  ++ G+ + G  E+A   F
Sbjct: 261 LCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELPDRNTVSWNAVICGFAQNGRGEDAVIFF 320

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+                               M+  G++PN   L+ +L AC H G + 
Sbjct: 321 ER-------------------------------MRAAGLRPNSVTLLGLLCACNHAGLVE 349

Query: 181 QGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAM 235
           +G   + Y  +   E+  IL       +VD+ S+ G +  A      +  +   G W A+
Sbjct: 350 KG---YMYFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKAL 406

Query: 236 ISGVAMNGDAKKS 248
           + G  ++ +A+ S
Sbjct: 407 LGGCHIHSNAELS 419



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 126/299 (42%), Gaps = 63/299 (21%)

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           ELF++MPE + +S + ++  ++R   ++E + LF +M  + +KPNE    +V+ +   L 
Sbjct: 54  ELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLK 113

Query: 178 AITQGLWVHS--------------------YAKRYHLEK-----------NVILATAVVD 206
            I  G  +H+                    YAK    E+           NV+  T ++ 
Sbjct: 114 NIYLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIH 173

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
            Y K G +  AL +F+ +  ++  +WNAM+ G +  G  ++++ LF  M++ G  P ++T
Sbjct: 174 GYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQST 233

Query: 267 FVAVLTT---------------------CTHAKMVRDGLNLF-------ENMSAVYGVEP 298
           F   +T+                     CT    V + L  F       E+   V+   P
Sbjct: 234 FPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNELP 293

Query: 299 QLE--HYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVG 354
                 +  V+   A+ G  E+A  F E  +  GL      + G LL AC   G +E G
Sbjct: 294 DRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLG-LLCACNHAGLVEKG 351


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 162/478 (33%), Positives = 239/478 (50%), Gaps = 78/478 (16%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
           F P+N+TF  L K C +   +   G+  H HVVK GF  D +V ++L++ Y+    +G A
Sbjct: 98  FVPDNFTFTVLAKCCALRMAVWE-GLETHGHVVKIGFCFDMYVSTALVDMYAKFGNLGLA 156

Query: 86  RALFDKSPDRDVVTWTT-------------------------------MVDGYGKMGDFE 114
           R +F+  PDR +V+WT                                ++DGY K+GD E
Sbjct: 157 RKVFNDMPDRSLVSWTALIGGYVRRGDMGNAWFLFKLMPGRDSAAFNLLIDGYVKVGDME 216

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDF------------------------------ 144
           +AR LF++MPERN +SW++++  Y    D                               
Sbjct: 217 SARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNAMIGGYCQNKQ 276

Query: 145 -KEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             E L LFR++Q   + +PNE  +VS+L A A LGA+  G WVH + +R  L+  V + T
Sbjct: 277 PHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRKKLDAAVNVCT 336

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           ++VDMY KCG +  A  VF  I  K+   WNA+I+G AMNG A ++LE F  M + G +P
Sbjct: 337 SLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAFSEMQQEGIKP 396

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            + T   VL+ C+H  +V +G   F+ M    G+ P++EHY C+VDLL RAG ++EAE  
Sbjct: 397 NDITMTGVLSACSHGGLVEEGKGQFKAMIE-SGLSPKIEHYGCLVDLLGRAGCLDEAENL 455

Query: 323 IEEKMGGLGGGDANVWGALLS----ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           I+         +AN  G +LS    AC     +    RV  +   M   +   +V+  N+
Sbjct: 456 IKSM-----PFEAN--GIILSSFSFACGFSNDVTRAQRVLNQAVNMEPGNNGIYVMMRNL 508

Query: 379 YK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           Y  E  W  +  ++  L+   G KK+ G S IEV+  V EF++G   H Q   I  VI
Sbjct: 509 YAMEERWK-DVKEINGLMRRRGAKKEVGSSAIEVDSRVSEFISGGIAHPQLDVIESVI 565



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 88/187 (47%), Gaps = 11/187 (5%)

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-NAV 129
           +LL+ ++L+ +          + D +V   T  +   G++    +AR LF+    R +  
Sbjct: 17  TLLQIHALILR---------NAIDANVNILTKFITTCGQLSSTRHARHLFDNRSHRGDTF 67

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
             ++++ ++  +    +  +L++ ++ E    P+      +   CA   A+ +GL  H +
Sbjct: 68  LCNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGH 127

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             +     ++ ++TA+VDMY+K G++  A  VF  + ++   +W A+I G    GD   +
Sbjct: 128 VVKIGFCFDMYVSTALVDMYAKFGNLGLARKVFNDMPDRSLVSWTALIGGYVRRGDMGNA 187

Query: 249 LELFDRM 255
             LF  M
Sbjct: 188 WFLFKLM 194


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 143/421 (33%), Positives = 242/421 (57%), Gaps = 12/421 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVIL---GPLENFGMFVHAHV 57
           +I GY Q N  K  +  +  M +     ++ T   +I AC  L   G +++   ++    
Sbjct: 229 LICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKH 288

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           V      D ++ +SL++ Y     +  AR +FD+  ++++V+W  M+ GY   GD   A+
Sbjct: 289 VDI----DVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAK 344

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +LF +MP RN +SW+ +++  ++ +   + L LF++M +  +KP+E  + SVL+AC+HLG
Sbjct: 345 KLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLG 404

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G  VH Y  R+ ++ +V +  A++DMY KCG V  AL VF  +  KD+ +W +MI 
Sbjct: 405 LLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMIL 464

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G+A+NG      ELF +M++ G QPT  +F+ +L  CTHA +V  GL  FE+M  VYG+ 
Sbjct: 465 GLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLR 524

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P+++HY CVVDLL+R+G ++ A +FI++ M  +   D  +W  LLSAC+++  + +    
Sbjct: 525 PEMKHYGCVVDLLSRSGELDRAYEFIKQ-MPVV--PDVVLWRILLSACKLHRNLVLAEIA 581

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             KL E+  ++   +VL  N Y  +  WD +A+++R L+    ++K    S IEV G   
Sbjct: 582 TSKLLELDPSNSGNYVLLSNTYAGSDRWD-DASRMRDLMVVGDVQKPSSWSSIEVIGATN 640

Query: 417 E 417
           +
Sbjct: 641 K 641



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 175/387 (45%), Gaps = 75/387 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLD-MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG  Q+  P  ++  Y D M + G   +N TF  L KAC  +  + + G   H  V+K
Sbjct: 127 LIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLH-GQVFHVQVLK 185

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GFG   F+ +SL+  Y    ++G A+ +FDK  DRD+V+W +++ GY +   F+   +L
Sbjct: 186 LGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDL 245

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL--- 176
           F  M E N  + S  M                               V V+ AC++L   
Sbjct: 246 FNLMREANVTADSVTM-------------------------------VKVILACSYLCED 274

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G +   +    Y +  H++ +V L  +++DMY + G V  A  VF+ +  K+  +WNAM+
Sbjct: 275 GVVDSMV---KYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAML 331

Query: 237 SGVAMNGD---AKK----------------------------SLELFDRMVKSGTQPTET 265
           +G A  GD   AKK                            +L+LF  M+ +  +P E 
Sbjct: 332 TGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEI 391

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           T  +VL+ C+H  ++  G  + E M   + ++  +     ++D+  + G+V++A +   +
Sbjct: 392 TVSSVLSACSHLGLLDTGQTVHEYMCR-HDIKSDVYVGNALIDMYCKCGVVDKALEVFHD 450

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIE 352
               +   D+  W +++    + G ++
Sbjct: 451 ----MKKKDSVSWTSMILGLAVNGFVD 473


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 165/523 (31%), Positives = 243/523 (46%), Gaps = 100/523 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMF----VHAH 56
           +I G++    P+  +  Y +M   G  P+ YTFP     C+I G  E   +F    +H  
Sbjct: 31  LISGFVLNGLPQDGLGAYEEMRQAGVLPDKYTFP-----CLIKGLCEVMEVFQVKKIHGL 85

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM------ 110
           V K G   D +V SSL+  Y     M  AR LFD+ PDRDVV W +MV+GY ++      
Sbjct: 86  VRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEA 145

Query: 111 -----------------------------GDFENAR------------------------ 117
                                        GDF+N R                        
Sbjct: 146 LGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDM 205

Query: 118 -----------ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
                      E+FE M E++  SW++I++A    SD    L LF +M   G++ +   +
Sbjct: 206 YGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTI 265

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEK--------NVILATAVVDMYSKCGHVHSAL 218
            ++L AC+HL A+  G  +H Y       K        N+    A++DMY+KCG +  A 
Sbjct: 266 TTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAG 325

Query: 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278
            VF  +SN+D  +WN MI G  M+G   ++L +F  M KSG +P E TFV VL  C+HA 
Sbjct: 326 MVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAG 385

Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF-----IEEKMGGLGGG 333
            +  G+     M   +GV P ++HY CV+D+L RAG +EEA K      I+         
Sbjct: 386 FISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQT-------- 437

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393
           +  VW ALL+AC++YG +++     +K+ E+       +VL  N Y  AG   E   +R 
Sbjct: 438 NPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCGNYVLMSNAYVAAGRYQEVLDIRH 497

Query: 394 LISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
            + +  +KK PGCS IE+   +  F+ GD  H +A  IY  +H
Sbjct: 498 TMRQQDVKKTPGCSWIELKNGMNTFINGDRNHPEARLIYPELH 540



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/162 (20%), Positives = 78/162 (48%), Gaps = 7/162 (4%)

Query: 207 MYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           MY+KC  ++ AL V    ++  ++  A+NA+ISG  +NG  +  L  ++ M ++G  P +
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF  ++        V   +     +    G++  +   + +V    ++ +++EA +  +
Sbjct: 61  YTFPCLIKGLCEVMEVFQ-VKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFD 119

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           E    +   D  +W ++++     G+ +    V R++++ G+
Sbjct: 120 E----IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGV 157


>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/441 (34%), Positives = 244/441 (55%), Gaps = 8/441 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +  F   ++  Y  M+  G EP+ YT   L+  C  L  +   G  VH  + + 
Sbjct: 202 MIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIR-LGKGVHGWIERR 260

Query: 61  G--FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           G  +  +  + ++LL+ Y    + G A+  FD    +D+ +W TMV G+ ++GD E A+ 
Sbjct: 261 GPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQA 320

Query: 119 LFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHL 176
           +F++MP+R+ VSW++++  YS+   D + V  LF +M  V  +KP+   +VS+++  A+ 
Sbjct: 321 VFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMVSLISGAANN 380

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G ++ G WVH    R  LE +  L++A++DMY KCG +  A  VF+  + KD   W +MI
Sbjct: 381 GELSHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMI 440

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G A +G  +++L+LF RM +    P + T +AVLT C+H+ +V +GL++F +M   +G 
Sbjct: 441 TGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVFYHMKEKFGF 500

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P+ EHY  +VDLL RAG +EEA+  ++ KM        ++WG++LSACR    IE    
Sbjct: 501 HPETEHYGSLVDLLCRAGRLEEAKDIVQNKMP--MRPSQSMWGSILSACREGEDIETAEL 558

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG-CSVIEVNGVV 415
              +L ++       +VL  NIY   G    ++K R+ +   G+KK  G  SV+ V GV 
Sbjct: 559 ALSELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMESRGVKKTAGYSSVVGVEGVH 618

Query: 416 EEFLAGDNRHAQAGEIYRVIH 436
               A    H +  EI R++ 
Sbjct: 619 SFVAAEKQNHPRWTEIKRILQ 639



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/383 (23%), Positives = 160/383 (41%), Gaps = 44/383 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  M+     P+  TF  L+KA   L  ++     +H H++          VS  L   +
Sbjct: 120 YSSMIRYRVSPDRQTFLHLMKASSFLSEVKQ----IHCHII----------VSGCLSLGN 165

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
            +                    W ++V  Y ++G    A ++F  MP+ +  S++ ++  
Sbjct: 166 YL--------------------WNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVG 205

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LE 195
           Y++     E L L+ +M   G++P+E  L+ +L  C HL  I  G  VH + +R      
Sbjct: 206 YAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYS 265

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            N+IL  A++DMY KC     A   F+ +  KD  +WN M+ G    GD + +  +FD+M
Sbjct: 266 SNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQM 325

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
            +       +            + VR+   LF  M  V  V+P       ++   A  G 
Sbjct: 326 PQRDLVSWNSLLFCYSKKGCDQRAVRE---LFYEMLIVEKVKPDRVTMVSLISGAANNGE 382

Query: 316 VEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           +    +++   M  L   GDA +  AL+      G IE    V++   E  +  +++ + 
Sbjct: 383 LSHG-RWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEKDVPLWTSMIT 441

Query: 375 SYNIYKEAGWDMEANKVRKLISE 397
            +  +   G+  +A ++ K + E
Sbjct: 442 GFAFH---GYGQQALQLFKRMQE 461



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 120/281 (42%), Gaps = 26/281 (9%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           P  N   ++ +++A S  S   E   L+  M    + P+    + ++ A + L  + Q  
Sbjct: 95  PNPNVFVYNTMISAVS--SSKNECFGLYSSMIRYRVSPDRQTFLHLMKASSFLSEVKQ-- 150

Query: 184 WVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            +H +      L     L  ++V  Y + G +  A  VF  +   D  ++N MI G A  
Sbjct: 151 -IHCHIIVSGCLSLGNYLWNSLVKFYMELGSLGFAEKVFAIMPQPDVSSFNVMIVGYAKQ 209

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL---FENMSAVYGVEPQ 299
           G   ++LEL+ +MV  G +P E T + +L  C H   +R G  +    E    VY     
Sbjct: 210 GFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLI 269

Query: 300 LEHYACVVDLLAR---AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           L +   ++D+  +   +G+ + A   +++K       D   W  ++      G +E    
Sbjct: 270 LRN--ALLDMYFKCKESGLAKRAFDALKKK-------DMRSWNTMVVGFVRLGDMEAAQA 320

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397
           V+ ++ +  +  +++ +  Y+   + G D  A  VR+L  E
Sbjct: 321 VFDQMPQRDLVSWNSLLFCYS---KKGCDQRA--VRELFYE 356


>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
          Length = 619

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 245/443 (55%), Gaps = 38/443 (8%)

Query: 1   MIRGYMQANFP--KLSVFCYLD-MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
           +IR +  +  P  +L    +   ML     PN +TFP L+KAC         G+  HA  
Sbjct: 114 LIRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKAC---AAFPGVGVQAHAAA 170

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +KFGF  D +V ++L+  YS                            G   +GD   AR
Sbjct: 171 LKFGFTTDQYVSNTLIHMYSCF--------------------------GGEFLGD---AR 201

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            +F++M + +AV+WSA++  Y R     + + LFR+MQ  G++P+E  ++ VL A A LG
Sbjct: 202 NVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGVLAAAADLG 261

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+    WV  + ++  + K+V L  A++D  +KCG +  A++VF+G+  +   +W ++I 
Sbjct: 262 ALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTIVSWTSVID 321

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
            +AM G  K+++ +F+ M  +G +P +  F+ VLT C+HA MV +G   FE+M   YG++
Sbjct: 322 ALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGID 381

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY C+VD+  RAGMVE A +F+  KM      +  +W  L++ACR +G++E+G  +
Sbjct: 382 PKIEHYGCMVDMFGRAGMVERAMEFV-HKMP--MKPNPIIWRTLVAACRAHGRLELGETI 438

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            R L        + +V+  N+Y       E +++R+ +S+ G+KK PGCS++E++G V E
Sbjct: 439 TRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHE 498

Query: 418 FLAGDNRHAQAGEIYRVIHSFLK 440
           F+AGD  H Q  EIY ++    +
Sbjct: 499 FIAGDESHPQWKEIYMMVEEMAR 521


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 238/439 (54%), Gaps = 8/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q+     +   +  M+      + +TF  ++ AC   G   + G  VH  +++ 
Sbjct: 269 MISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVH-GKSVHGQIIRL 327

Query: 61  GFGEDP----FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
                P     V ++L+  YS   K+  A+ +FD    +DVV+W T++ GY   G  + A
Sbjct: 328 QPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKA 387

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            E+F+ MP +N +SW  +++ Y      ++ L LF QM+   +KP +      + AC  L
Sbjct: 388 VEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGEL 447

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G  +H++  +   E +     A++ MY+KCG V+ A  VF  + N D+ +WNAMI
Sbjct: 448 GALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMI 507

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           S +  +G  +++LELFD+MV  G  P   +F+ +LT C HA +V +G + FE+M   +G+
Sbjct: 508 SALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI 567

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  +HYA ++DLL R+G + EA   I+           ++W A+LS CR  G +E G  
Sbjct: 568 SPGEDHYARLIDLLGRSGRIGEARDLIKTMP---FEPTPSIWEAILSGCRTNGDMEFGAY 624

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              +L  M      T++L  N Y  AG  ++A +VRKL+ + G+KK+PGCS IEV   + 
Sbjct: 625 AADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIH 684

Query: 417 EFLAGDNRHAQAGEIYRVI 435
            FL GD +H +A E+Y+ +
Sbjct: 685 VFLVGDTKHPEAQEVYQFL 703



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 20/334 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFG----MFVHA 55
           M+  + +A+    +V  +  +L  G   P++Y+F  LI A   +G + N        +H 
Sbjct: 131 MMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISA---VGQMHNLAAPHCTQLHC 187

Query: 56  HVVKFGFGEDPFVVSSLLEFY---SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
            V+K G      V ++L+  Y           AR + D+ PD+D +TWTTMV GY + GD
Sbjct: 188 SVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGD 247

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              AR +FE++  +  V W+A+++ Y +     +   LFR+M    +  +E    SVL+A
Sbjct: 248 VNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSA 307

Query: 173 CAHLGAITQGLWVHSYAKRYH----LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           CA+ G    G  VH    R       E  + +  A+V +YSK G +  A  +F+ ++ KD
Sbjct: 308 CANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKD 367

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             +WN ++SG   +G   K++E+F  M        + +++ +++   H  +  D L LF 
Sbjct: 368 VVSWNTILSGYIDSGCLDKAVEVFKVM----PYKNDLSWMVMVSGYVHGGLSEDALKLFN 423

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            M A   V+P    YA  +      G ++   + 
Sbjct: 424 QMRA-EDVKPCDYTYAGAIAACGELGALKHGRQL 456


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 144/387 (37%), Positives = 221/387 (57%), Gaps = 10/387 (2%)

Query: 55  AHVVKF---GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           AH V F   GF +  FV +SL+  Y     +G AR +FD+   +DV+ WT++V  Y +  
Sbjct: 167 AHAVSFLVGGFDKHRFVENSLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSR 226

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D  +A E+F + P ++ V+W+A++  Y++ +   + L +F +M  +G+  +E  L   ++
Sbjct: 227 DMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAIS 286

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           ACA LGA+ +  WV   A+      NV++ + +VDMY+KCG +  A  VF+G+  K+   
Sbjct: 287 ACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYT 346

Query: 232 WNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +++M+ G+A +G A++++ LF  MV ++   P   TF+ VLT C+HA MV DG   F  M
Sbjct: 347 YSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQM 406

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
              YG+ P  +HY C+VDLL RAG+V+EA   +        GG   VWGALL ACRI+GK
Sbjct: 407 KDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGG---VWGALLGACRIHGK 463

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVI 409
            EV       L ++       +VL  N    AG WD E +KVRK++    +KK P  S  
Sbjct: 464 TEVAKVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWD-EVSKVRKVMRSRRLKKVPAVSWF 522

Query: 410 E-VNGVVEEFLAGDNRHAQAGEIYRVI 435
           E  +G+V +F AGDN H +  EI + +
Sbjct: 523 EGRDGLVHQFFAGDNSHPRTREIKKAL 549



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 101/245 (41%), Gaps = 33/245 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY Q   P  ++  +  M  +G   +  +    I AC  LG ++    +V       
Sbjct: 249 MVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKR-AAWVQEIAEMN 307

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG +  V S L++ Y+    +  A  +FD   +++V T+++MV G    G    A  LF
Sbjct: 308 GFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALF 367

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M  R  V+                              PN    + VLTAC+H G +T
Sbjct: 368 KDMVRRADVA------------------------------PNHVTFIGVLTACSHAGMVT 397

Query: 181 QGLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            G +  +  K +Y +  +    T +VD+  + G V  AL +   ++     G W A++  
Sbjct: 398 DGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGA 457

Query: 239 VAMNG 243
             ++G
Sbjct: 458 CRIHG 462


>gi|224136906|ref|XP_002322445.1| predicted protein [Populus trichocarpa]
 gi|222869441|gb|EEF06572.1| predicted protein [Populus trichocarpa]
          Length = 531

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 243/456 (53%), Gaps = 40/456 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +L  ++ GF P  +TFP ++K+C     ++  G  VH  + K  F  D +V +SL+ FYS
Sbjct: 64  FLSQMEDGFLPYMFTFPAVLKSCAKFMAVDE-GRQVHGVIAKMDFVCDIYVENSLVHFYS 122

Query: 78  LVHKMGTARALFDKSPDRDVVTWT----------------------------------TM 103
           +   +  A  +FD+   RD V+WT                                   +
Sbjct: 123 VCGSLDDASRVFDEMLVRDAVSWTGVIYPGIKGYLILGKGIHGLIIERGFGLGLEVSNAL 182

Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
           +D Y K       +++F+++PE++ VSW++I+    +    KEVL LF  +Q  G++P+ 
Sbjct: 183 MDMYVKCESLPEEKQVFDELPEKDIVSWTSIICGMVQCKFPKEVLELFCDVQSSGIEPDG 242

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
             L SVL+A A  GA+  G  V  Y     ++ ++ + TAVVDMY+KCG +  A+ +F  
Sbjct: 243 IILTSVLSARASPGALDYGRLVREYIDHKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNV 302

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           + +K+   WNAM++G+AM+G  +K+L+LF+ MV+ G +P E TF+  LT C H   V +G
Sbjct: 303 MPHKNVLTWNAMLNGLAMHGHGQKALQLFEEMVREGMRPNEVTFLVTLTACCHCGFVGEG 362

Query: 284 LNLFENM-SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
              F  M S  Y + P+LEHY C+VDLL RAG+++EA + + + M  L   D  + GALL
Sbjct: 363 RRYFHWMKSQQYNLPPRLEHYGCMVDLLCRAGLLDEALE-LTKAMPML--PDVRIMGALL 419

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402
           S C+  G +E+   +  +L E    D   +VL  NI        +  ++R+L+ + G++K
Sbjct: 420 STCKANGNVELPREILDRLVEFDSRDSGVYVLLSNILAINQRWADVTRIRRLM-KMGIEK 478

Query: 403 KPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
            PG SVIEV+G   E + GD R+ Q   I   + S 
Sbjct: 479 TPGSSVIEVDGKAHEIIVGDLRYPQDKHIRLFLKSL 514



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 43/264 (16%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           +I G +Q  FPK  L +FC  D+   G EP+      ++ A    G L ++G  V  ++ 
Sbjct: 213 IICGMVQCKFPKEVLELFC--DVQSSGIEPDGIILTSVLSARASPGAL-DYGRLVREYID 269

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
                 D  + +++++ Y+    +  A  +F+  P ++V+TW  M++G    G  + A +
Sbjct: 270 HKAIKWDIQIGTAVVDMYAKCGCIEMAMQIFNVMPHKNVLTWNAMLNGLAMHGHGQKALQ 329

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE+M                                  GM+PNE   +  LTAC H G 
Sbjct: 330 LFEEMVRE-------------------------------GMRPNEVTFLVTLTACCHCGF 358

Query: 179 ITQGL----WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWN 233
           + +G     W+ S  ++Y+L   +     +VD+  + G +  AL + + +    D     
Sbjct: 359 VGEGRRYFHWMKS--QQYNLPPRLEHYGCMVDLLCRAGLLDEALELTKAMPMLPDVRIMG 416

Query: 234 AMISGVAMNGDAKKSLELFDRMVK 257
           A++S    NG+ +   E+ DR+V+
Sbjct: 417 ALLSTCKANGNVELPREILDRLVE 440



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 46/99 (46%)

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +++  +F +    F    E G  P      +VL +CA   A+ +G  VH    +     +
Sbjct: 51  FAKGPNFADYACDFLSQMEDGFLPYMFTFPAVLKSCAKFMAVDEGRQVHGVIAKMDFVCD 110

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           + +  ++V  YS CG +  A  VF+ +  +DA +W  +I
Sbjct: 111 IYVENSLVHFYSVCGSLDDASRVFDEMLVRDAVSWTGVI 149


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 231/439 (52%), Gaps = 37/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q   P  ++  +  M+D   E  N T    + AC  LG +E  G FVH  + + 
Sbjct: 348 MIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQ-GRFVHKLLDQL 406

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
             G D  V++SL+  YS                               K    + A E+F
Sbjct: 407 ELGSDVSVMNSLISMYS-------------------------------KCKRVDIAAEIF 435

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E +  +  VSW+A++  Y++     E +  F +MQ   +KP+   +VSV+ A A L  + 
Sbjct: 436 ENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLP 495

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           Q  W+H    R  L+KNV +ATA+VDMY+KCG VH+A  +F+ +  +    WNAMI G  
Sbjct: 496 QAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYG 555

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  K +LELF++M K   +P E TF+ VL+ C+H+ +V +G   F +M   YG+EP +
Sbjct: 556 THGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAM 615

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY  +VDLL RA  + EA  FI +KM        +V+GA+L ACRI+  +E+G +   +
Sbjct: 616 DHYGAMVDLLGRANRLNEAWDFI-QKMPIEPA--ISVFGAMLGACRIHKNVELGEKAANR 672

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + ++   D   HVL  NIY  A  WD  A +VR  + + G++K PG SV+E+   V  F 
Sbjct: 673 IFDLDPDDGGYHVLLANIYATASMWDKVA-RVRTTMEKKGIQKTPGWSVVELQNEVHTFY 731

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           +G   H QA +IY  + + 
Sbjct: 732 SGTTSHPQAKKIYAFLETL 750



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 134/283 (47%), Gaps = 32/283 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M++GY + +    +V  +  M   G  P  Y F  L+K C     L   G  +H  ++  
Sbjct: 146 MLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRK-GKEIHCQLIVN 204

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + F ++ ++  Y+    +  A  +FD+ P+RD+V W T++ GY + G  + A    
Sbjct: 205 GFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTA---- 260

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      L L  +MQE G +P+   +VS+L A A +G++ 
Sbjct: 261 ---------------------------LELVLRMQEEGKRPDSITIVSILPAVADVGSLR 293

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H Y+ R   E  V ++TA+VDMYSKCG V +A  +F+ ++ K   +WN+MI G  
Sbjct: 294 IGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYV 353

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
            NGD   ++E+F +M+    + T  T +  L  C     V  G
Sbjct: 354 QNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG 396



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 45/330 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q  F K ++   L M + G  P++ T   ++ A   +G L   G  +H + ++ 
Sbjct: 247 IISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLR-IGRSIHGYSMRA 305

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + FV  S                             T +VD Y K G    AR +F
Sbjct: 306 GF--ESFVNVS-----------------------------TALVDMYSKCGSVGTARLIF 334

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M  +  VSW++++  Y +  D    + +F++M +  ++     ++  L ACA LG + 
Sbjct: 335 DRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVE 394

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG +VH    +  L  +V +  +++ MYSKC  V  A  +FE + +K   +WNAMI G A
Sbjct: 395 QGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYA 454

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG----- 295
            NG   ++++ F +M     +P   T V+V+            L++      ++G     
Sbjct: 455 QNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAE-------LSVLPQAKWIHGLVIRT 507

Query: 296 -VEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            ++  +     +VD+ A+ G V  A K  +
Sbjct: 508 CLDKNVFVATALVDMYAKCGAVHTARKLFD 537



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 2/229 (0%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V  + K G    A  +F+ + ++    +  ++  Y+R S   + +S F +M+  G++
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P       +L  C     + +G  +H          NV   T VV+MY+KC  V  A  +
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F+ +  +D   WN +ISG A NG  K +LEL  RM + G +P   T V++L        +
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           R G ++    S   G E  +     +VD+ ++ G V  A + I ++M G
Sbjct: 293 RIGRSI-HGYSMRAGFESFVNVSTALVDMYSKCGSVGTA-RLIFDRMTG 339



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +  T +V ++ K G +H A  VF+ I +K    ++ M+ G A N     ++  F RM   
Sbjct: 110 LFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYD 169

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G +P    F  +L  C     +R G  +   +  V G    +     VV++ A+  +VEE
Sbjct: 170 GVRPVVYNFTYLLKVCGDNADLRKGKEIHCQL-IVNGFASNVFAMTGVVNMYAKCRLVEE 228

Query: 319 AEKFIEEKMGGLGGGDANVWGALLS 343
           A K  +     +   D   W  ++S
Sbjct: 229 AYKMFDR----MPERDLVCWNTIIS 249


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 206/361 (57%), Gaps = 7/361 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
           ++++  ++    M  A   F  +P++ D V WT MV GY  +G+   A E FE MP RN 
Sbjct: 195 NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNL 254

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           VSW+A++A Y + S   + L LFR M +E  ++PN S L SVL  C++L A+  G  +H 
Sbjct: 255 VSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 314

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           +  +  L +N+ + T++V MY KCG + SA  +F  +  +D  AWNAMISG A +GD K+
Sbjct: 315 WCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 374

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           ++ LF+RM   G +P   TFVAVLT C H  +   G+  FE M  +YG+EP+++HY+C+V
Sbjct: 375 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 434

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           DLL RAG +E A   I            + +G LL+ACR+Y  +E       KL E    
Sbjct: 435 DLLCRAGKLERAVDLIRSMP---FEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQ 491

Query: 368 DFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
               +V   NIY  A  WD + ++VR+ + +  + K PG S IE+ GV+ EF + D  H 
Sbjct: 492 SAGAYVQLANIYAGANQWD-DVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHP 550

Query: 427 Q 427
           Q
Sbjct: 551 Q 551



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 39/294 (13%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  AR LFD+ P  D V++ T++  +   GD + AR LF  MP R+ VSW+ +++  S+
Sbjct: 113 RLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSK 172

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               +E  ++F  M  V    + + +VS       + A  +  W  +  ++     + +L
Sbjct: 173 SGAVEEAKAVFLAM-PVRNSVSWNAMVSGFACSRDMSAAEE--WFRNAPEK----GDAVL 225

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SG 259
            TA+V  Y   G+V  A+  FE +  ++  +WNA+++G   N  A  +L LF  MV+ + 
Sbjct: 226 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 285

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            QP  +T  +VL  C+             N+SA+ G   Q+ H  C+   L+R   V  +
Sbjct: 286 VQPNASTLSSVLLGCS-------------NLSAL-GFGKQI-HQWCMKLPLSRNLTVGTS 330

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV-WRKLAEMGITDFSTH 372
              +  K G L            SAC+++G++   + V W  +    I+ ++ H
Sbjct: 331 LVSMYCKCGDLS-----------SACKLFGEMHTRDVVAWNAM----ISGYAQH 369



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY++ +    ++  +  M+ +   +PN  T   ++  C  L  L  FG  +H   +K
Sbjct: 260 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL-GFGKQIHQWCMK 318

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                +  V +SL+  Y     + +A  LF +   RDVV W  M+ GY + GD + A  L
Sbjct: 319 LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINL 378

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+                               M++ G++PN    V+VLTAC H G  
Sbjct: 379 FER-------------------------------MKDEGVEPNWITFVAVLTACIHTGLC 407

Query: 180 TQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
             G+       + Y +E  V   + +VD+  + G +  A+ +   +
Sbjct: 408 DFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 453



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR-ISDFKEVLSLFRQMQEVGM 159
           T  V    + GD   A E F   P +   +++ ++A Y+R +    +   LF ++     
Sbjct: 70  TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRI----- 124

Query: 160 KPNESGL-VSVLTACAHLGAITQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVH 215
            P    +  + L +C        G      A+R       ++V+    +V   SK G V 
Sbjct: 125 -PTPDAVSYNTLLSCHFASGDADG------ARRLFASMPVRDVVSWNTMVSGLSKSGAVE 177

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            A +VF  +  +++ +WNAM+SG A + D   + E F    + G     T  V+
Sbjct: 178 EAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVS 231


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 218/419 (52%), Gaps = 35/419 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ ML    EP++YTF  ++KAC     L N+GM VH  V+K G G D FV S++     
Sbjct: 461 FVSMLRSTMEPDDYTFGSVVKACAGKKAL-NYGMEVHGRVIKSGMGLDWFVGSAI----- 514

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     +D Y K G    A ++ E++ ER  VSW++I++ 
Sbjct: 515 --------------------------IDMYCKCGMLVEAEKIHERLEERTTVSWNSIISG 548

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +S     +  LS F +M +VG+ P+     +VL  CA+L  +  G  +H    +  L  +
Sbjct: 549 FSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSD 608

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V +A+ +VDMYSKCG++  +  +FE    +D   W+AMI   A +G  + +++LF+ M  
Sbjct: 609 VYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQL 668

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +P  T F++VL  C H   V  GL+ F  M + YG++PQ+EHY+C+VDLL R+G V 
Sbjct: 669 QNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVN 728

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA + IE         D  +W  LL  CR+ G +EV  +    L ++   D S +VL  N
Sbjct: 729 EALELIESMP---FEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSN 785

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           +Y  AG   E  K+R  +    +KK+PGCS I+V   V  FL GD  H ++ EIY+  H
Sbjct: 786 VYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLVGDKAHPRSEEIYQQTH 844



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 138/257 (53%), Gaps = 8/257 (3%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           TF  + + C  L  + N G   HA +   GF    FV + LL+FY     +  A  +FDK
Sbjct: 40  TFSHIFQKCSNLKAI-NPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
            P RDV++W TM+ GY  +G+ E A+ LF+ MPER+ VSW+++++ Y +    ++ + +F
Sbjct: 99  MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +M+ + ++ + +    VL AC  +     GL VH  A +   + +V+  TA+VDMYS C
Sbjct: 159 TKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTC 218

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
             +  A ++F  +  +++  W+A+I+G   N    + L+L+  M+  G   ++ TF +  
Sbjct: 219 KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAF 278

Query: 272 TTCTHAKMVRDGLNLFE 288
            +C        GL+ FE
Sbjct: 279 RSCA-------GLSAFE 288



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 162/346 (46%), Gaps = 41/346 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM--FVHAHVV 58
           M+  Y+Q  F + S+  +  M  +  + +  TF  ++KAC     +E++G+   VH   +
Sbjct: 141 MLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACT---GIEDYGLGLQVHCLAI 197

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF                               D DVVT T +VD Y      ++A  
Sbjct: 198 QMGF-------------------------------DSDVVTGTALVDMYSTCKKLDHAFN 226

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F +MPERN+V WSA++A Y R   F E L L++ M + GM  +++   S   +CA L A
Sbjct: 227 IFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSA 286

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
              G  +H+YA + +   + I+ TA +DMY+KC  +  A  VF    N    + NA+I G
Sbjct: 287 FELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVG 346

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A      ++LE+F  + KS     E +    LT C+  K   +G+ L   ++   G++ 
Sbjct: 347 YARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQL-HGLAVKCGLDF 405

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +     ++D+ A+ G + EA    ++    +   DA  W A+++A
Sbjct: 406 NICVANTILDMYAKCGALMEACLIFDD----MEIKDAVSWNAIIAA 447



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 159/329 (48%), Gaps = 38/329 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++ +     +  Y  MLD G   +  TF    ++C  L   E  G  +HA+ +K 
Sbjct: 242 VIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFE-LGTQLHAYALKT 300

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG D  V ++ L+ Y+                DR       MVD          AR++F
Sbjct: 301 NFGYDNIVGTATLDMYA--------------KCDR-------MVD----------ARKVF 329

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
              P     S +A++  Y+R     E L +FR +Q+  +  +E  L   LTAC+ +    
Sbjct: 330 NTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYL 389

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ +H  A +  L+ N+ +A  ++DMY+KCG +  A  +F+ +  KDA +WNA+I+   
Sbjct: 390 EGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHE 449

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            N   +++L LF  M++S  +P + TF +V+  C   K +  G+   E    V      L
Sbjct: 450 QNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGM---EVHGRVIKSGMGL 506

Query: 301 EHY--ACVVDLLARAGMVEEAEKFIEEKM 327
           + +  + ++D+  + GM+ EAEK I E++
Sbjct: 507 DWFVGSAIIDMYCKCGMLVEAEK-IHERL 534



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 140/298 (46%), Gaps = 24/298 (8%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D ++    T++D Y K G    A  +F+ M  ++AVSW+AI+AA+ +    +E L+LF  
Sbjct: 404 DFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVS 463

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M    M+P++    SV+ ACA   A+  G+ VH    +  +  +  + +A++DMY KCG 
Sbjct: 464 MLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGM 523

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  + E +  +   +WN++ISG +     + +L  F RM++ G  P   T+  VL  
Sbjct: 524 LVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDI 583

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C +   V  G  +   +  +  +   +   + +VD+ ++ G ++++    E+        
Sbjct: 584 CANLATVELGKQIHGQILKL-QLHSDVYIASTIVDMYSKCGNMQDSRIMFEKA----PKR 638

Query: 334 DANVWGALL----------SACRIYGKIEVGN---------RVWRKLAEMGITDFSTH 372
           D   W A++           A +++ ++++ N          V R  A MG  D   H
Sbjct: 639 DYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLH 696


>gi|449451309|ref|XP_004143404.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
 gi|449526377|ref|XP_004170190.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 577

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 224/417 (53%), Gaps = 6/417 (1%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T   +   C  LG LE F   VH   +  G   +  V +++++ Y        + ++F +
Sbjct: 147 TLVSIAGTCACLGALE-FLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSR 205

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
             +RDVVTWT+MV  Y +    ++A  +F  MP +N  +W+A++ A  +     E L LF
Sbjct: 206 MKERDVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLF 265

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE---KNVILATAVVDMY 208
           +QM E    PN    V VL+ACA L  I +G  +H    R   E    NV +  A++D+Y
Sbjct: 266 QQMLEEKTSPNAFTFVGVLSACADLALIAKGKEIHGLIIRRSSELNFPNVYVCNALIDLY 325

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           SK G V SA  +F  I  KD  +WN++I+G A NG  +++L  F +M + G +P + TF+
Sbjct: 326 SKSGDVKSARMLFNLILEKDVVSWNSLITGFAQNGLGREALLAFRKMTEVGIRPNKVTFL 385

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           AVL+ C+H  +  +GL + E M   Y +EP LEHYA ++D+  R   + EA   I     
Sbjct: 386 AVLSACSHTGLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPN 445

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
             G     +WGA+L ACRI+  +++  R    L EM   +   +V+  N++  A   M+A
Sbjct: 446 --GSKHVGIWGAVLGACRIHENLDLAIRAAETLFEMEPDNAGRYVMLSNVFAAASRWMDA 503

Query: 389 NKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445
           + VRKL+ E G KK+   S IE+  +  +F+A DN H+Q GEIY ++   L+  N++
Sbjct: 504 HNVRKLMEERGFKKEVAYSCIEIRNIRHKFVARDNSHSQMGEIYELMFILLEHMNII 560



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 171/356 (48%), Gaps = 47/356 (13%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           GM +H+H++K     D F+ + L++ YS  + M  A+  FD  P R++ +W T++  Y +
Sbjct: 30  GMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKAFDDLPIRNIHSWNTILASYSR 89

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG--MKPNESGLV 167
            G F  AR++F++MP  N VS++ ++++++    + E +++FRQMQ+    +  +E  LV
Sbjct: 90  AGFFSQARKVFDEMPHPNIVSYNTLISSFTHHGLYVESMNIFRQMQQDFDLLALDEITLV 149

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           S+   CA LGA+     VH  A    LE N+I+  A+VD Y KCG   ++ S+F  +  +
Sbjct: 150 SIAGTCACLGALEFLRQVHGAAIVIGLEFNMIVCNAIVDAYGKCGDPDASYSIFSRMKER 209

Query: 228 D-------------------------------AGAWNAMISGVAMNGDAKKSLELFDRMV 256
           D                                  W A+I+ +  N  + ++L+LF +M+
Sbjct: 210 DVVTWTSMVVAYNQTSRLDDAFRVFSCMPVKNVHTWTALINALVKNKYSNEALDLFQQML 269

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH-YAC--VVDLLARA 313
           +  T P   TFV VL+ C    ++  G  +   +      E    + Y C  ++DL +++
Sbjct: 270 EEKTSPNAFTFVGVLSACADLALIAKGKEI-HGLIIRRSSELNFPNVYVCNALIDLYSKS 328

Query: 314 GMVEEAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           G V+ A      I EK       D   W +L++     G        +RK+ E+GI
Sbjct: 329 GDVKSARMLFNLILEK-------DVVSWNSLITGFAQNGLGREALLAFRKMTEVGI 377



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 116/243 (47%), Gaps = 40/243 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK- 59
           +I   ++  +   ++  +  ML+    PN +TF  ++ AC  L  +   G  +H  +++ 
Sbjct: 248 LINALVKNKYSNEALDLFQQMLEEKTSPNAFTFVGVLSACADLALIAK-GKEIHGLIIRR 306

Query: 60  ---FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
                F  + +V ++L++ YS    + +AR LF+   ++DVV+W +++ G+ +       
Sbjct: 307 SSELNF-PNVYVCNALIDLYSKSGDVKSARMLFNLILEKDVVSWNSLITGFAQ------- 358

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
                     N +   A++A              FR+M EVG++PN+   ++VL+AC+H 
Sbjct: 359 ----------NGLGREALLA--------------FRKMTEVGIRPNKVTFLAVLSACSHT 394

Query: 177 GAITQGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWN 233
           G  ++GL +    ++ Y +E ++     ++DM+ +   +  AL +     N  K  G W 
Sbjct: 395 GLSSEGLCILELMEKFYDIEPSLEHYAVMIDMFGRENRLAEALDLISRAPNGSKHVGIWG 454

Query: 234 AMI 236
           A++
Sbjct: 455 AVL 457



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/223 (20%), Positives = 105/223 (47%), Gaps = 15/223 (6%)

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+      + + C     +  G+ +HS+  +  L  ++ LA  ++DMYSKC  + +A   
Sbjct: 9   PSFDHCARLFSKCIQHKHLRVGMSLHSHLIKTALSFDLFLANRLIDMYSKCNSMENAQKA 68

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F+ +  ++  +WN +++  +  G   ++ ++FD M      P   ++  ++++ TH  + 
Sbjct: 69  FDDLPIRNIHSWNTILASYSRAGFFSQARKVFDEM----PHPNIVSYNTLISSFTHHGLY 124

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE--EAEKFIEEKMGG--LGGGDAN 336
            + +N+F  M   + +    E     + L++ AG      A +F+ +  G   + G + N
Sbjct: 125 VESMNIFRQMQQDFDLLALDE-----ITLVSIAGTCACLGALEFLRQVHGAAIVIGLEFN 179

Query: 337 --VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
             V  A++ A    G  +    ++ ++ E  +  +++ V++YN
Sbjct: 180 MIVCNAIVDAYGKCGDPDASYSIFSRMKERDVVTWTSMVVAYN 222


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 150/450 (33%), Positives = 247/450 (54%), Gaps = 11/450 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+   F   ++  +  M  +G + + +T+  ++ AC   G   + G  VHA++++ 
Sbjct: 262 MISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLH-GKQVHAYILRT 320

Query: 61  ----GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
                      V ++L   Y    K+  AR +F++ P +D+V+W  ++ GY   G  + A
Sbjct: 321 EPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEA 380

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           +  FE+MPERN ++W+ +++  ++    +E L LF +M+  G +P +      + ACA L
Sbjct: 381 KSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWL 440

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            A+  G  +H+   R   + ++    A++ MY+KCG V +A  +F  +   D+ +WNAMI
Sbjct: 441 AALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMI 500

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           + +  +G   ++LELF+ M+K    P   TF+ VL+TC+HA +V +G   F++MS +YG+
Sbjct: 501 AALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGI 560

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  +HYA ++DLL RAG   EA+  IE      G     +W ALL+ CRI+G +++G +
Sbjct: 561 CPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPG---PPIWEALLAGCRIHGNMDLGIQ 617

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
              +L E+      T+VL  N+Y   G WD +  KVRKL+ + G+KK+PGCS IEV   V
Sbjct: 618 AAERLFELMPQHDGTYVLLSNMYATVGRWD-DVAKVRKLMRDKGVKKEPGCSWIEVENKV 676

Query: 416 EEFLAGDNRHAQAGEIYRVIHSF-LKMSNL 444
             FL  D  H +   +Y  +    LKM  L
Sbjct: 677 HVFLVDDIVHPEVQAVYNYLEELGLKMRKL 706



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 174/363 (47%), Gaps = 45/363 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY   N    ++  + D+L  GF P+N+TF  ++ A  ++   E     +H  VVK 
Sbjct: 120 MITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKS 179

Query: 61  GFGEDPFVVSSLLEFY---------SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           G G    V+++LL  +         S    M  AR LFD+  +RD ++WTTM+ GY + G
Sbjct: 180 GSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNG 239

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           + + AR+  + M E+  V+W+A+++ Y     F E L +FR+M  +G++ +E    SVL+
Sbjct: 240 ELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLS 299

Query: 172 ACAHLGAITQGLWVHSY----AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           ACA+ G    G  VH+Y      R  L+ ++ +  A+  +Y KCG V  A  VF  +  K
Sbjct: 300 ACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK 359

Query: 228 DAGAWNA-------------------------------MISGVAMNGDAKKSLELFDRMV 256
           D  +WNA                               MISG+A NG  ++SL+LF+RM 
Sbjct: 360 DLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMK 419

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G +P +  F   +  C     +  G  L   +  + G +  L     ++ + A+ G+V
Sbjct: 420 SEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRL-GFDSSLSAGNALITMYAKCGVV 478

Query: 317 EEA 319
           E A
Sbjct: 479 EAA 481



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 167/387 (43%), Gaps = 57/387 (14%)

Query: 37  IKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           ++ C    P+  +    VHAH++  GF    ++++ L++ Y     + +A  LFD+    
Sbjct: 20  LQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQP 79

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D+V  TT++  +   G+   ARE+F   P   R+ V ++A++  YS  +D    + LFR 
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 154 MQEVGMKPNE---------------------------------------SGLVSVLTACA 174
           +   G +P+                                        + L+SV   CA
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 175 HLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
               ++    + +  K +    E++ +  T ++  Y + G + +A    +G++ K   AW
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           NAMISG   +G   ++LE+F +M   G Q  E T+ +VL+ C +A     G  +    + 
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVH---AY 316

Query: 293 VYGVEPQ--LEHYACVVDLLA----RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
           +   EP+  L+    V + LA    + G V+EA +   +    +   D   W A+LS   
Sbjct: 317 ILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQ----MPVKDLVSWNAILSGYV 372

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHV 373
             G+I+     + ++ E  +  ++  +
Sbjct: 373 NAGRIDEAKSFFEEMPERNLLTWTVMI 399


>gi|317106614|dbj|BAJ53121.1| JHL07K02.11 [Jatropha curcas]
          Length = 514

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/430 (32%), Positives = 237/430 (55%), Gaps = 31/430 (7%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P++  F  L++AC +   +       H  +++FG+G +  + +SL+  Y   +++  A  
Sbjct: 9   PDHQLFCDLLEACKLSQDIRT-ATETHTRIIRFGYGTNSSIAASLISTYVNCNQLNLAYQ 67

Query: 88  LFDKSPDRDVVTWTT-------MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           +      R V +WT        ++D + ++G++E A+++F KMP+R+ V+W++++  Y R
Sbjct: 68  VI-----RQVFSWTVSLAGLNLVIDSFMRIGEYEIAKKVFCKMPDRDVVTWNSMIGGYVR 122

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
              F+E L  F+ M    ++P++    SV+TACA LGA+    W+H    +  +E N IL
Sbjct: 123 NGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGALNHAQWLHDLMVQKRIEVNFIL 182

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
           ++A++DMYSKCG + +A  VFE +   D   WN++I+G+A++G A  ++ +F +M     
Sbjct: 183 SSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVFSKMEAENV 242

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P   TF+ +L  C+H  +V++G   F+ M   Y ++PQLEHY  +VDLL RAG+++EA 
Sbjct: 243 LPDSLTFLGILKACSHCGLVKEGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAY 302

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS-----THVLS 375
             I          D  VW  LLSACR +   E+G        E+ + + S      +VL 
Sbjct: 303 AMI---TAMPMEPDVIVWRILLSACRTHRNTELG--------EVAVANISGPKSGDYVLL 351

Query: 376 YNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
            NIY  +  WD  A +VR+++ E G++K+ G S  E   VV  F AGD  H +   +Y++
Sbjct: 352 SNIYCSQNRWD-NAQEVREMMKEEGVRKRRGKSWFEWEDVVHRFRAGDKSHPETEALYKI 410

Query: 435 IHSFLKMSNL 444
           +   ++ + L
Sbjct: 411 LEGLIQRTKL 420



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/240 (21%), Positives = 102/240 (42%), Gaps = 34/240 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++    + ++  +  ML    EP+ +TF  +I AC  LG L N   ++H  +V+ 
Sbjct: 116 MIGGYVRNGKFEEALRSFQAMLSSNVEPDKFTFASVITACARLGAL-NHAQWLHDLMVQK 174

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               +  + S+L++ YS   ++ TA+ +F+     DV  W ++++G    G   +A  +F
Sbjct: 175 RIEVNFILSSALIDMYSKCGRIETAKEVFESVERNDVSVWNSLINGLAVHGLALDAMMVF 234

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM   N +                               P+    + +L AC+H G + 
Sbjct: 235 SKMEAENVL-------------------------------PDSLTFLGILKACSHCGLVK 263

Query: 181 QGLWVHSYAKRYH-LEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G       + Y+ ++  +    A+VD+  + G +  A ++   +    D   W  ++S 
Sbjct: 264 EGRKYFDLMENYYSIKPQLEHYGAMVDLLGRAGLLDEAYAMITAMPMEPDVIVWRILLSA 323


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/343 (36%), Positives = 210/343 (61%), Gaps = 11/343 (3%)

Query: 102 TMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
           T+++ Y   GD + +R +F+K+ E   V+++AI+ + +R +   E L+LFR++QE+G+KP
Sbjct: 152 TLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKP 211

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
            +  ++ VL++CA LG++  G W+H Y K+Y  ++ V + T ++DMY+KCG +  A++VF
Sbjct: 212 TDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVF 271

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
             +  +D  AW+A+I   A +GD  +++ + + M K   QP E TF+ +L  C+H  +V 
Sbjct: 272 RDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVE 331

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE---KMGGLGGGDANVW 338
           +G   F  M+  YG+ P ++HY C+VDLL RAG ++EA KFI+E   K   +      +W
Sbjct: 332 EGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPI------LW 385

Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISE 397
             LLSAC  +G +E+G RV  ++ E+  +    +V+  N+    G WD + N +RK + +
Sbjct: 386 RTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWD-DVNHLRKTMID 444

Query: 398 TGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            G  K PGCS IEVN VV EF AG+  H+ +  ++R +   +K
Sbjct: 445 KGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVK 487



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 114/240 (47%), Gaps = 34/240 (14%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + ++ ++G +P + T   ++ +C +LG L+  G ++H +V K+GF               
Sbjct: 201 FRELQEIGLKPTDVTMLVVLSSCALLGSLD-LGRWMHEYVKKYGF--------------- 244

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                           DR V   TT++D Y K G  ++A  +F  MP+R+  +WSAI+ A
Sbjct: 245 ----------------DRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVA 288

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEK 196
           Y+   D  + +S+  +M++  ++P+E   + +L AC+H G + +G  + H     Y +  
Sbjct: 289 YATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVP 348

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA-WNAMISGVAMNGDAKKSLELFDRM 255
           ++     +VD+  + G +  A    + +  K     W  ++S  + +G+ +    + +R+
Sbjct: 349 SIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERI 408



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 118/236 (50%), Gaps = 20/236 (8%)

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           E+A +LF+++ + N V ++ +   Y+R++D   +++ FR+                L   
Sbjct: 78  EHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRR---------------CLRLV 122

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           + + A+ +G  +H +A +  +  N+ +   +++MY+ CG + ++  VF+ I      A+N
Sbjct: 123 SKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYN 182

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           A+I  +A N  A ++L LF  + + G +PT+ T + VL++C     +  G  + E +   
Sbjct: 183 AIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKK- 241

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           YG +  ++    ++D+ A+ G +++A     +    +   D   W A++ A   +G
Sbjct: 242 YGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRD----MPKRDTQAWSAIIVAYATHG 293


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 238/444 (53%), Gaps = 44/444 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G+ +A         + ++L  G  P+NYT P +I+ C     L+  G  +H  V+K 
Sbjct: 72  MVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQ-IGRVIHDVVLKH 130

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL                               VD Y K    E+A+ LF
Sbjct: 131 GLLSDHFVCASL-------------------------------VDMYAKCIVVEDAQRLF 159

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+M  ++ V+W+ ++ AY+  + + E L LF +M+E G+ P++  +V+V+ ACA LGA+ 
Sbjct: 160 ERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMH 218

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +  + + Y  R     +VIL TA++DMY+KCG V SA  VF+ +  K+  +W+AMI+   
Sbjct: 219 RARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYG 278

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  K +++LF  M+     P   TFV++L  C+HA ++ +GL  F +M   + V P +
Sbjct: 279 YHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDV 338

Query: 301 EHYACVVDLLARAGMVEEAEKFIE----EKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +HY C+VDLL RAG ++EA + IE    EK       D  +W ALL ACRI+ K+E+  +
Sbjct: 339 KHYTCMVDLLGRAGRLDEALRLIEAMTVEK-------DERLWSALLGACRIHSKMELAEK 391

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
               L E+   +   +VL  NIY +AG   +  K R ++++  +KK PG + IEV+    
Sbjct: 392 AANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTY 451

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLK 440
           +F  GD  H Q+ EIY ++ S +K
Sbjct: 452 QFSVGDRSHPQSKEIYEMLMSLIK 475



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 129/309 (41%), Gaps = 59/309 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHAHVV  G  +D  + + LL  Y+    +  A +LFD    RD  TW+ MV G+ K GD
Sbjct: 22  VHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGD 81

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                                               + FR++   G+ P+   L  V+  
Sbjct: 82  HAGC-------------------------------YATFRELLRCGVTPDNYTLPFVIRT 110

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C     +  G  +H    ++ L  +  +  ++VDMY+KC  V  A  +FE + +KD   W
Sbjct: 111 CRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTW 170

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----------THAKMVR 281
             MI   A + +A +SL LFDRM + G  P +   V V+  C            +  +VR
Sbjct: 171 TVMIGAYA-DCNAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVR 229

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
           +G +L      + G          ++D+ A+ G VE A +  +     +   +   W A+
Sbjct: 230 NGFSL----DVILGTA--------MIDMYAKCGSVESAREVFDR----MKEKNVISWSAM 273

Query: 342 LSACRIYGK 350
           ++A   +G+
Sbjct: 274 IAAYGYHGR 282



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 94/196 (47%), Gaps = 15/196 (7%)

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           + +L  C ++  I Q   VH++       +++++A  ++  Y++   +  A S+F+G++ 
Sbjct: 7   IDLLLRCRNVFHIRQ---VHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTM 63

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           +D+  W+ M+ G A  GD       F  +++ G  P   T   V+ TC     ++ G  +
Sbjct: 64  RDSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIG-RV 122

Query: 287 FENMSAVYGVEPQLEHYAC--VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             ++   +G+    +H+ C  +VD+ A+  +VE+A++  E  +      D   W  ++ A
Sbjct: 123 IHDVVLKHGLLS--DHFVCASLVDMYAKCIVVEDAQRLFERML----SKDLVTWTVMIGA 176

Query: 345 ---CRIYGKIEVGNRV 357
              C  Y  + + +R+
Sbjct: 177 YADCNAYESLVLFDRM 192


>gi|225432410|ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 247/441 (56%), Gaps = 5/441 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA-CVILGPLENFGMFVHAHVVK 59
           MI GY Q    +L +  +  M +   +P+ +TF  L+ A C +  P  ++G  +H  ++K
Sbjct: 174 MISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEP--SYGYMMHGFIIK 231

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G+ +   V +S+L FYS +        +F+       V+W  M+D + K+GD   A  +
Sbjct: 232 SGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHMKIGDTHEAFLV 291

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+  PE+N VSW++++  Y+R    ++ LS F +M E  ++P++    +VL AC+ L  +
Sbjct: 292 FQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGAVLHACSSLATL 351

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H     Y     V +   +V+MY+KCG +  + + F+ I  KD  +WNAM+ G+
Sbjct: 352 GHGKMIHGSIIHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAFKEILGKDLVSWNAMLFGL 411

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            M+G A ++LEL++ MV SG +P + TF+ +L TC+H+ ++  G  LFE+M +VYG+  +
Sbjct: 412 GMHGHATQALELYEEMVASGMKPDKVTFIGLLMTCSHSGLIEKGQALFESMVSVYGLSQE 471

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            EH  C+VDLL R G + +A + ++E     G  + ++  ALL AC  + ++ +G  +  
Sbjct: 472 TEHVVCMVDLLGRGGYLAQARELVDE-YSRTGRAETSLPEALLGACFAHSEVRMGANLGE 530

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L         ++VL  N+Y  +G   EA  VRK +++ G+KK PGCS IEV   V  F+
Sbjct: 531 YLKVFEPQKEMSYVLLSNLYCVSGQWKEAEMVRKTMTDHGVKKMPGCSWIEVRNKVTVFV 590

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
           AG++ H    E+ +++ +FLK
Sbjct: 591 AGNHSHPYMEELCKIL-NFLK 610



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 182/403 (45%), Gaps = 49/403 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q    + ++  +  M      P+ +TF   + AC  LG L   GM +HA VV  
Sbjct: 42  MLASYSQLGLHQQALCLFHHMRIANSRPDRFTFTATLSACAGLGELRR-GMKIHAQVVVS 100

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V +SL++ Y       +AR +F++    + V+W +++  Y   G F+ AR +F
Sbjct: 101 GCQSSLPVGNSLIDMYGKCLSATSARRVFEEMSIMNEVSWCSLLFAYTSSGLFDVARVVF 160

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP++  ++W+ +++ Y +  D +  L LF++M+E  ++P++    +++ A   L   +
Sbjct: 161 DGMPKKVEIAWNIMISGYGQCGDVELCLGLFKKMREDSLQPDQWTFSALVNALCELQEPS 220

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYS------------------------------- 209
            G  +H +  +    K V ++ +++  YS                               
Sbjct: 221 YGYMMHGFIIKSGWVKAVEVSNSILSFYSKLGCKDDVMKVFESIGILTQVSWNAMIDAHM 280

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           K G  H A  VF+    K+  +W +MI+G A NG  +++L  F +M+++  QP + TF A
Sbjct: 281 KIGDTHEAFLVFQLAPEKNVVSWTSMITGYARNGHGEQALSFFVKMMENHIQPDDFTFGA 340

Query: 270 VLTTCT------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           VL  C+      H KM+   +         YG    ++    +V++ A+ G ++ +    
Sbjct: 341 VLHACSSLATLGHGKMIHGSI-------IHYGFHAYVDVGNGLVNMYAKCGDIQGSNTAF 393

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +E +    G D   W A+L    ++G       ++ ++   G+
Sbjct: 394 KEIL----GKDLVSWNAMLFGLGMHGHATQALELYEEMVASGM 432



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 31/202 (15%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T+ +    K+G   +AR LF++MP ++ V+W+A++A+YS++   ++ L LF  M+    +
Sbjct: 9   TSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRIANSR 68

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+     + L+ACA LG + +G+ +H+       + ++ +  +++DMY KC    SA  V
Sbjct: 69  PDRFTFTATLSACAGLGELRRGMKIHAQVVVSGCQSSLPVGNSLIDMYGKCLSATSARRV 128

Query: 221 FE-------------------------------GISNKDAGAWNAMISGVAMNGDAKKSL 249
           FE                               G+  K   AWN MISG    GD +  L
Sbjct: 129 FEEMSIMNEVSWCSLLFAYTSSGLFDVARVVFDGMPKKVEIAWNIMISGYGQCGDVELCL 188

Query: 250 ELFDRMVKSGTQPTETTFVAVL 271
            LF +M +   QP + TF A++
Sbjct: 189 GLFKKMREDSLQPDQWTFSALV 210



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%)

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +  ++   T+ +   +K G + SA  +F+ + +KD  AWNAM++  +  G  +++L LF 
Sbjct: 1   MHSHLFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFH 60

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
            M  + ++P   TF A L+ C     +R G+ +   +  V G +  L     ++D+  + 
Sbjct: 61  HMRIANSRPDRFTFTATLSACAGLGELRRGMKIHAQV-VVSGCQSSLPVGNSLIDMYGKC 119

Query: 314 GMVEEAEKFIEE 325
                A +  EE
Sbjct: 120 LSATSARRVFEE 131


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 254/465 (54%), Gaps = 37/465 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +IRG  +++ P+ S+  +++M      P ++++F  L+KA      LE+ G+ +H   + 
Sbjct: 76  LIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLES-GIQLHCQAIV 134

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARA-------------------------------L 88
            G     FV ++L+  YS    +  A+                                +
Sbjct: 135 HGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMM 194

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           F++ P R++ +W  M+ GY K G+ E AR+LF +MP ++ VSWS ++  ++    F E  
Sbjct: 195 FNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAF 254

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
             FR++Q+VGM+PNE  L   L+ACA  GAI  G  +H + ++      V +  A++D Y
Sbjct: 255 GFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTY 314

Query: 209 SKCGHVHSALSVFEGISNKDA-GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           SKCG+V  A  VFE +  K +  +W +MI+G+AM+G  +++++LF  M +SG +P    F
Sbjct: 315 SKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAF 374

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           +++L  C+HA ++  G   F  M  +Y +EP +EHY C+VDL  RAG +++A +FI   M
Sbjct: 375 ISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIH-M 433

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387
             L    A +W  LL AC I+G +++  RV  +L+E+   +   HVL  NIY  AG   +
Sbjct: 434 PVL--PTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKD 491

Query: 388 ANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
              VR+ +++  M K PG S+IEV+ ++  F+AG+ +++   E Y
Sbjct: 492 VAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAY 536



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 43/305 (14%)

Query: 53  VHAHVVKFGFGEDPFVVSSLL--EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           VHA+V K G   DP +   LL     S+   +  AR LF   P+ DV    T++ G  + 
Sbjct: 24  VHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAES 83

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
              +N+   F +M  R      +   A+                              +L
Sbjct: 84  DTPQNSLITFVEMRRRLTAPLDSFSFAF------------------------------LL 113

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            A A   ++  G+ +H  A  + L+ ++ + T +V MYS+CG V  A  VFE +   +  
Sbjct: 114 KAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVV 173

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AWNA+++     GD K +  +F+RM         T++  +L   T A  +     LF  M
Sbjct: 174 AWNAVVTACFRCGDVKGADMMFNRMPFRNL----TSWNVMLAGYTKAGELELARKLFLEM 229

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYG 349
                V      ++ ++   A  G   EA  F  E +  G+   + ++ GA LSAC   G
Sbjct: 230 PVKDDVS-----WSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGA-LSACADAG 283

Query: 350 KIEVG 354
            IE G
Sbjct: 284 AIEFG 288



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 109/247 (44%), Gaps = 37/247 (14%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV------- 220
           S+LT C  L  + Q   VH+Y  +  L+ + I+A  ++        +HSA+SV       
Sbjct: 10  SLLTNCRSLKNLKQ---VHAYVCKTGLDTDPIIAGKLL--------LHSAVSVPDALDYA 58

Query: 221 ---FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET-TFVAVLTTCTH 276
              F    N D    N +I G+A +   + SL  F  M +  T P ++ +F  +L     
Sbjct: 59  RRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAAS 118

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
            + +  G+ L    + V+G++  L     +V + +  G V  A+K  EE        + N
Sbjct: 119 YRSLESGIQL-HCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMF------EPN 171

Query: 337 V--WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394
           V  W A+++AC   G ++  + ++ ++    +T ++  +  Y    +AG   E    RKL
Sbjct: 172 VVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYT---KAG---ELELARKL 225

Query: 395 ISETGMK 401
             E  +K
Sbjct: 226 FLEMPVK 232


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 238/439 (54%), Gaps = 8/439 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+Q+     +   +  M+      + +TF  ++ AC   G   + G  VH  +++ 
Sbjct: 271 MISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVH-GKSVHGQIIRL 329

Query: 61  GFGEDP----FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
                P     V ++L+  YS   K+  A+ +FD    +DVV+W T++ GY   G  + A
Sbjct: 330 QPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKA 389

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            E+F+ MP +N +SW  +++ Y      ++ L LF QM+   +KP +      + AC  L
Sbjct: 390 VEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGEL 449

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G  +H++  +   E +     A++ MY+KCG V+ A  VF  + N D+ +WNAMI
Sbjct: 450 GALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMI 509

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           S +  +G  +++LELFD+MV  G  P   +F+ +LT C HA +V +G + FE+M   +G+
Sbjct: 510 SALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGI 569

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  +HYA ++DLL R+G + EA   I+           ++W A+LS CR  G +E G  
Sbjct: 570 SPGEDHYARLIDLLGRSGRIGEARDLIKTMP---FEPTPSIWEAILSGCRTNGDMEFGAY 626

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              +L  M      T++L  N Y  AG  ++A +VRKL+ + G+KK+PGCS IEV   + 
Sbjct: 627 AADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIH 686

Query: 417 EFLAGDNRHAQAGEIYRVI 435
            FL GD +H +A E+Y+ +
Sbjct: 687 VFLVGDTKHPEAQEVYQFL 705



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 24/336 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFG----MFVHA 55
           M+  + +A+    +V  +  +L  G   P++Y+F  LI A   +G + N        +H 
Sbjct: 133 MMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISA---VGQMHNLAAPHCTQLHC 189

Query: 56  HVVKFGFGEDPFVVSSLLEFY---SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
            V+K G      V ++L+  Y           AR + D+ PD+D +TWTTMV GY + GD
Sbjct: 190 SVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGD 249

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
              AR +FE++  +  V W+A+++ Y +     +   LFR+M    +  +E    SVL+A
Sbjct: 250 VNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSA 309

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVI------LATAVVDMYSKCGHVHSALSVFEGISN 226
           CA+ G    G  VH    R  L+ N +      +  A+V +YSK G +  A  +F+ ++ 
Sbjct: 310 CANAGFFVHGKSVHGQIIR--LQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNL 367

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           KD  +WN ++SG   +G   K++E+F  M        + +++ +++   H  +  D L L
Sbjct: 368 KDVVSWNTILSGYIDSGCLDKAVEVFKVM----PYKNDLSWMVMVSGYVHGGLSEDALKL 423

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           F  M A   V+P    YA  +      G ++   + 
Sbjct: 424 FNQMRA-EDVKPCDYTYAGAIAACGELGALKHGRQL 458



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 108/251 (43%), Gaps = 39/251 (15%)

Query: 66  PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP- 124
           P +   L+  Y+L   + T  ALF   PD   V  T++V  +   G   +A   F+ +P 
Sbjct: 63  PHLTLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPP 122

Query: 125 -ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACA--HLGAIT 180
             R+ V  +A+M+A++R S     +S+F  +   G ++P++    ++++A    H  A  
Sbjct: 123 ARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAP 182

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKC----------------------------- 211
               +H    +      + ++ A++ +Y KC                             
Sbjct: 183 HCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVV 242

Query: 212 -----GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
                G V++A SVFE +  K    WNAMISG   +G    + ELF RMV       E T
Sbjct: 243 GYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFT 302

Query: 267 FVAVLTTCTHA 277
           F +VL+ C +A
Sbjct: 303 FTSVLSACANA 313


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/433 (31%), Positives = 242/433 (55%), Gaps = 6/433 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y +      +   + +M D    P+      ++ AC   G +  +   ++  +++ 
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR-YNRAIYEFLIEN 241

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  ++++L+  Y+    M  AR  F K   R++   T MV GY K G  ++A+ +F
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++  +++ V W+ +++AY      +E L +F +M   G+KP+   + SV++ACA+LG + 
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILD 361

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +  WVHS      LE  + +  A+++MY+KCG + +   VFE +  ++  +W++MI+ ++
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G+A  +L LF RM +   +P E TFV VL  C+H+ +V +G  +F +M+  Y + P+L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDL  RA ++ EA + IE         +  +WG+L+SACRI+G++E+G    ++
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIE---SMPVASNVVIWGSLMSACRIHGELELGKFAAKR 538

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + E+        VL  NIY +E  W+ +   +R+++ E  + K+ G S I+ NG   EFL
Sbjct: 539 ILELEPDHDGALVLMSNIYAREQRWE-DVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFL 597

Query: 420 AGDNRHAQAGEIY 432
            GD RH Q+ EIY
Sbjct: 598 IGDKRHKQSNEIY 610



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 178/353 (50%), Gaps = 14/353 (3%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           +R   +++ P+ ++  Y  +  +G   + ++F P++KA   +  L   GM +H    K  
Sbjct: 83  LRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFE-GMELHGVAFKIA 141

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
              DPFV +  ++ Y+   ++  AR +FD+   RDVVTW TM++ Y + G  + A +LFE
Sbjct: 142 TLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFE 201

Query: 122 KMPERNAVS----WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +M + N +        I++A  R  + +   +++  + E  ++ +   L +++T  A  G
Sbjct: 202 EMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAG 261

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +        + ++  + +N+ ++TA+V  YSKCG +  A  +F+    KD   W  MIS
Sbjct: 262 CMDMA---REFFRKMSV-RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMIS 317

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
               +   +++L +F+ M  SG +P   +  +V++ C +  ++ D      +   V G+E
Sbjct: 318 AYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL-DKAKWVHSCIHVNGLE 376

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
            +L     ++++ A+ G + +A + + EKM      +   W ++++A  ++G+
Sbjct: 377 SELSINNALINMYAKCGGL-DATRDVFEKM---PRRNVVSWSSMINALSMHGE 425



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 136/287 (47%), Gaps = 9/287 (3%)

Query: 116 ARELFEKMPER-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           A  +F  +P    ++ ++  +   SR S+ +  +  +++++ VG + ++   + +L A +
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            + A+ +G+ +H  A +     +  + T  +DMY+ CG ++ A +VF+ +S++D   WN 
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI      G   ++ +LF+ M  S   P E     +++ C     +R    ++E +    
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE-N 241

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            V         +V + A AG ++ A +F  +    +   +  V  A++S     G+++  
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRK----MSVRNLFVSTAMVSGYSKCGRLDDA 297

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
             ++ +  +  +  ++T +   + Y E+ +  EA +V + +  +G+K
Sbjct: 298 QVIFDQTEKKDLVCWTTMI---SAYVESDYPQEALRVFEEMCCSGIK 341


>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 442

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/351 (39%), Positives = 207/351 (58%), Gaps = 7/351 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR +     P  S+  ++ ML  G  P+  T+P L+KA   L   E  GM VH H+VK 
Sbjct: 84  LIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQE-LGMAVHVHIVKS 142

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ +SL+  Y+    + +AR +FD+ P +++VTW  M+DGY K GD   ARE+F
Sbjct: 143 GHEIDKFIQNSLIHMYASCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVF 202

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPE++ VSWS+++  Y +   + E ++LF +M   G   NE  LVS L ACAHLGA+ 
Sbjct: 203 NLMPEKDVVSWSSLIDGYVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALE 262

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA--WNAMISG 238
            G  +H Y     L   ++L T++VDMY+KCG +H AL+VF   S ++A    WNA+I G
Sbjct: 263 HGRMMHRYIVENELPLTIVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGG 322

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G  K+++ LF  M   G  P E T++ +L+ C H  +V +    F+ +   +G+ P
Sbjct: 323 LATHGLIKEAMNLFCEMKMVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRK-HGMIP 381

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           ++EHYAC+VD L+RAG V EA +F+ +         +++ GALLS C  +G
Sbjct: 382 KVEHYACMVDALSRAGQVSEAYQFLCQMP---VQPTSSMLGALLSGCMKHG 429



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/372 (21%), Positives = 145/372 (38%), Gaps = 75/372 (20%)

Query: 30  NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
           N T   L+  C  +  L+     +HA +   G  +D  + S LL F +L           
Sbjct: 13  NQTLISLLDGCKSMFELKR----IHALLFTLGISQDETIKSKLLLFSAL----------- 57

Query: 90  DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
             SP RD+                + + +L   +P     +W+ ++ A+S   +    ++
Sbjct: 58  --SPARDL----------------DYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSIT 99

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F +M + G+ P+      ++ A + L     G+ VH +  +   E +  +  +++ MY+
Sbjct: 100 VFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYA 159

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK----------------------- 246
            C  + SA  VF+ +  K+   WNAM+ G A  GD                         
Sbjct: 160 SCRDIASARKVFDEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDG 219

Query: 247 --------KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
                   +++ LF+RM   G    E T V+ L  C H   +  G      M   Y VE 
Sbjct: 220 YVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHG-----RMMHRYIVEN 274

Query: 299 QLE----HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           +L         +VD+ A+ G + EA      +   L   D  +W A++     +G I+  
Sbjct: 275 ELPLTIVLQTSLVDMYAKCGAIHEALTVF--RACSLQEADVLIWNAIIGGLATHGLIKEA 332

Query: 355 NRVWRKLAEMGI 366
             ++ ++  +GI
Sbjct: 333 MNLFCEMKMVGI 344


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/426 (35%), Positives = 233/426 (54%), Gaps = 37/426 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y Q++  K ++  +L M      PNN+TF  +++AC     L+  G  +H+ V+KF
Sbjct: 309 MIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLD-LGKQIHSCVLKF 367

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + FV ++++                               D Y K G+ EN+ +LF
Sbjct: 368 GLNSNVFVSNAIM-------------------------------DVYAKCGEIENSMKLF 396

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++P+RN V+W+ I+  Y ++ D +  ++LF  M E  M+P E    SVL A A L A+ 
Sbjct: 397 EELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALE 456

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            GL +HS   +    K+ ++A +++DMY+KCG ++ A   F+ ++ +D  +WNAMI G +
Sbjct: 457 PGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYS 516

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G + ++L LFD M  +  +P + TFV VL+ C++A ++  G   FE+MS  Y ++P +
Sbjct: 517 MHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCI 576

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+V LL R G  +EA K I E           VW ALL AC I+ K+++G    + 
Sbjct: 577 EHYTCMVWLLGRLGRFDEAMKLIGEIA---YQPSVMVWRALLGACVIHKKVDLGRVCAQH 633

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + EM   D +THVL  N+Y  AG WD  A  VRK + +  ++K+PG S +E  GVV  F 
Sbjct: 634 VLEMEPHDDATHVLLSNMYATAGRWDNVA-FVRKYMQKKKVRKEPGLSWVENQGVVHYFS 692

Query: 420 AGDNRH 425
            GD  H
Sbjct: 693 VGDTSH 698



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 173/350 (49%), Gaps = 39/350 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y +  F + S+  +  M  MG++PNN+T    +K+C+ L    N G  VH   +K 
Sbjct: 208 MVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAF-NVGKSVHGCALKG 266

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            +  D FV  +LLE Y+                               K G+  +A+ LF
Sbjct: 267 CYDHDLFVGIALLELYA-------------------------------KSGEIIDAQRLF 295

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+MP+ + + WS ++A Y++    KE L LF +M++  + PN     SVL ACA   ++ 
Sbjct: 296 EEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLD 355

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +HS   ++ L  NV ++ A++D+Y+KCG + +++ +FE + +++   WN +I G  
Sbjct: 356 LGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYV 415

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE-NMSAVYGVEPQ 299
             GD ++++ LF  M++   QPTE T+ +VL        +  GL +    +  +Y  +  
Sbjct: 416 QLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTV 475

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           + +   ++D+ A+ G + +A +   +KM      D   W A++    ++G
Sbjct: 476 VANS--LIDMYAKCGRINDA-RLTFDKM---NKRDEVSWNAMICGYSMHG 519



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 137/273 (50%), Gaps = 5/273 (1%)

Query: 57  VVKFGFGEDPFVVSSLLEFY---SLVHKMGTARA-LFDKSPDRDVVTWTTMVDGYGKMGD 112
           + K G   +PFV ++LL+      L H   T  A ++      D    T ++D Y   G+
Sbjct: 127 IFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGN 186

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            + AR +F+ +  ++ VSW+ ++A Y+    ++E L LF QM+ +G KPN   +   L +
Sbjct: 187 VDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKS 246

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           C  L A   G  VH  A +   + ++ +  A++++Y+K G +  A  +FE +   D   W
Sbjct: 247 CLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           + MI+  A +  +K++L+LF RM ++   P   TF +VL  C  +  +  G  +  +   
Sbjct: 307 SLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQI-HSCVL 365

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            +G+   +     ++D+ A+ G +E + K  EE
Sbjct: 366 KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEE 398



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 129/303 (42%), Gaps = 44/303 (14%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           +++++  +++  +  G     G  +H H++K G   D F  + LL FY            
Sbjct: 33  DSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYV----------- 81

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
                               +    ++A +LF++MP+ N +S+  +   YSR   F + L
Sbjct: 82  --------------------QSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQAL 121

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
               ++ + G + N     ++L     +        +H+   +     +  + TA++D Y
Sbjct: 122 HFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAY 181

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           S  G+V  A  VF+ I  KD  +W  M++  A N   ++SL+LF++M   G +P   T  
Sbjct: 182 SVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTIS 241

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGV------EPQLEHYACVVDLLARAGMVEEAEKF 322
             L +C        GL  F    +V+G       +  L     +++L A++G + +A++ 
Sbjct: 242 GALKSCL-------GLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRL 294

Query: 323 IEE 325
            EE
Sbjct: 295 FEE 297


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 230/439 (52%), Gaps = 37/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q    + +   +L MLD G EP N +    + AC  LG LE  G +VH      
Sbjct: 315 MIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLER-GRYVH------ 367

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                    R L +K    DV    +++  Y K    + A  +F
Sbjct: 368 -------------------------RLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVF 402

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  +  V+W+A++  Y++     E L+LF +MQ   +KP+   LVSV+TA A L    
Sbjct: 403 GNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTR 462

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           Q  W+H  A R  ++KNV + TA++D ++KCG + +A  +F+ +  +    WNAMI G  
Sbjct: 463 QAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYG 522

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG  +++L+LF+ M     +P E TF++V+  C+H+ +V +G+  FE+M   YG+EP +
Sbjct: 523 TNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTM 582

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY  +VDLL RAG +++A KFI++     G     V GA+L ACRI+  +E+G +   +
Sbjct: 583 DHYGAMVDLLGRAGRLDDAWKFIQDMPVKPG---ITVLGAMLGACRIHKNVELGEKTADE 639

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L ++   D   HVL  N+Y  A  WD  A +VR  + + G++K PGCS++E+   V  F 
Sbjct: 640 LFDLDPDDGGYHVLLANMYASASMWDKVA-RVRTAMEKKGIQKTPGCSLVELRNEVHTFY 698

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           +G   H Q+  IY  + + 
Sbjct: 699 SGSTNHPQSKRIYAYLETL 717



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 108/176 (61%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +V+ Y K    E+A ++FE+MP+R+ VSW+ ++A Y++    +  + +  QMQE G K
Sbjct: 181 TAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQK 240

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+   LVSVL A A L A+  G  +H YA R   E  V +ATA++D Y KCG V SA  V
Sbjct: 241 PDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLV 300

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           F+G+S+++  +WN MI G A NG+++++   F +M+  G +PT  + +  L  C +
Sbjct: 301 FKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACAN 356



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 33/324 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY Q  F + +V   L M + G +P++ T   ++ A   L  L   G  +H +  + 
Sbjct: 214 VVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALR-IGRSIHGYAFRA 272

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF           E+                     V   T M+D Y K G   +AR +F
Sbjct: 273 GF-----------EYM--------------------VNVATAMLDTYFKCGSVRSARLVF 301

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M  RN VSW+ ++  Y++  + +E  + F +M + G++P    ++  L ACA+LG + 
Sbjct: 302 KGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLE 361

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G +VH       +  +V +  +++ MYSKC  V  A SVF  + +K    WNAMI G A
Sbjct: 362 RGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYA 421

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG   ++L LF  M     +P   T V+V+T      + R        ++    ++  +
Sbjct: 422 QNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQA-KWIHGLAIRTLMDKNV 480

Query: 301 EHYACVVDLLARAGMVEEAEKFIE 324
                ++D  A+ G ++ A K  +
Sbjct: 481 FVCTALIDTHAKCGAIQTARKLFD 504



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 36/299 (12%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  + K      A  +FE +  +  V +  ++  Y++ S  ++ +  + +M+   + 
Sbjct: 80  TKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVM 139

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P       +L        + +G  +H        + N+   TAVV++Y+KC  +  A  +
Sbjct: 140 PVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKM 199

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           FE +  +D  +WN +++G A NG A++++++  +M ++G +P   T V+VL      K +
Sbjct: 200 FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKAL 259

Query: 281 RDGLNL--------FENMSAVYGVEPQLEHY-AC-----------------------VVD 308
           R G ++        FE M  V      L+ Y  C                       ++D
Sbjct: 260 RIGRSIHGYAFRAGFEYMVNV--ATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMID 317

Query: 309 LLARAGMVEEA-EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             A+ G  EEA   F++    G+   + ++ GA L AC   G +E G  V R L E  I
Sbjct: 318 GYAQNGESEEAFATFLKMLDEGVEPTNVSMMGA-LHACANLGDLERGRYVHRLLDEKKI 375



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 1/127 (0%)

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           +  T ++ ++ K   +  A  VFE + +K    ++ M+ G A N   + ++  ++RM   
Sbjct: 77  LFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCD 136

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
              P    F  +L        +R G  +   M    G +  L     VV+L A+   +E+
Sbjct: 137 EVMPVVYDFTYLLQLSGENLDLRRGREI-HGMVITNGFQSNLFAMTAVVNLYAKCRQIED 195

Query: 319 AEKFIEE 325
           A K  E 
Sbjct: 196 AYKMFER 202


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 206/361 (57%), Gaps = 7/361 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
           ++++  ++    M  A   F  +P++ D V WT MV GY  +G+   A E FE MP RN 
Sbjct: 146 NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNL 205

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           VSW+A++A Y + S   + L LFR M +E  ++PN S L SVL  C++L A+  G  +H 
Sbjct: 206 VSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 265

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           +  +  L +N+ + T++V MY KCG + SA  +F  +  +D  AWNAMISG A +GD K+
Sbjct: 266 WCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           ++ LF+RM   G +P   TFVAVLT C H  +   G+  FE M  +YG+EP+++HY+C+V
Sbjct: 326 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 385

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           DLL RAG +E A   I            + +G LL+ACR+Y  +E       KL E    
Sbjct: 386 DLLCRAGKLERAVDLIRSMP---FEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQ 442

Query: 368 DFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
               +V   NIY  A  WD + ++VR+ + +  + K PG S IE+ GV+ EF + D  H 
Sbjct: 443 SAGAYVQLANIYAGANQWD-DVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHP 501

Query: 427 Q 427
           Q
Sbjct: 502 Q 502



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 39/294 (13%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  AR LFD+ P  D V++ T++  +   GD + AR LF  MP R+ VSW+ +++  S+
Sbjct: 64  RLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSK 123

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               +E  ++F  M  V    + + +VS       + A  +  W  +  ++     + +L
Sbjct: 124 SGAVEEAKAVFLAM-PVRNSVSWNAMVSGFACSRDMSAAEE--WFRNAPEK----GDAVL 176

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SG 259
            TA+V  Y   G+V  A+  FE +  ++  +WNA+++G   N  A  +L LF  MV+ + 
Sbjct: 177 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            QP  +T  +VL  C+             N+SA+ G   Q+ H  C+   L+R   V  +
Sbjct: 237 VQPNASTLSSVLLGCS-------------NLSAL-GFGKQI-HQWCMKLPLSRNLTVGTS 281

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV-WRKLAEMGITDFSTH 372
              +  K G L            SAC+++G++   + V W  +    I+ ++ H
Sbjct: 282 LVSMYCKCGDLS-----------SACKLFGEMHTRDVVAWNAM----ISGYAQH 320



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY++ +    ++  +  M+ +   +PN  T   ++  C  L  L  FG  +H   +K
Sbjct: 211 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL-GFGKQIHQWCMK 269

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                +  V +SL+  Y     + +A  LF +   RDVV W  M+ GY + GD + A  L
Sbjct: 270 LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINL 329

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+                               M++ G++PN    V+VLTAC H G  
Sbjct: 330 FER-------------------------------MKDEGVEPNWITFVAVLTACIHTGLC 358

Query: 180 TQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
             G+       + Y +E  V   + +VD+  + G +  A+ +   +
Sbjct: 359 DFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR-ISDFKEVLSLFRQMQEVGM 159
           T  V    + GD   A E F   P +   +++ ++A Y+R +    +   LF ++     
Sbjct: 21  TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRI----- 75

Query: 160 KPNESGL-VSVLTACAHLGAITQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVH 215
            P    +  + L +C        G      A+R       ++V+    +V   SK G V 
Sbjct: 76  -PTPDAVSYNTLLSCHFASGDADG------ARRLFASMPVRDVVSWNTMVSGLSKSGAVE 128

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            A +VF  +  +++ +WNAM+SG A + D   + E F    + G     T  V+
Sbjct: 129 EAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVS 182


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 236/440 (53%), Gaps = 10/440 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY        ++  + D+L + G E +++T   ++ AC  +  L   G  VHA  V 
Sbjct: 247 MISGYADNLLFDEALSMFRDLLMEEGIEADSFTLGSVLAACADMASLRR-GKEVHAQAVV 305

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   + FV  +L+E YS    +  A+  FD   +RD  TW  ++ GY      EN + L
Sbjct: 306 RGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNL 365

Query: 120 FEKMP----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
            +KM     E N  +W+ I++ +      +  L LF +MQ   ++P+   +  +L ACA 
Sbjct: 366 IQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACAR 425

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L  I +G  VH+++ R   E +V +  A+VDMY+KCG +  A+ V+  ISN +  + NAM
Sbjct: 426 LATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAM 485

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           ++  AM+G   + + LF  M+ +G +P   TF++VL++C HA  V  G   F+ M+  Y 
Sbjct: 486 LTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMT-YYN 544

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           V P L+HY C+VDLL+RAG ++EA + +++        D+ +WGALL  C I+G +E+G 
Sbjct: 545 VTPSLKHYTCIVDLLSRAGRLDEAYELVKKIP---RKPDSVMWGALLGGCVIWGNVELGE 601

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
                L E+   +   +VL  N+Y  AG   + ++ R++I + GM K PGCS IE    +
Sbjct: 602 IAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDREDI 661

Query: 416 EEFLAGDNRHAQAGEIYRVI 435
             FL+ D  H +  +IY  +
Sbjct: 662 HVFLSCDKSHEKTEDIYTTL 681



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 41/366 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +L +LD   + +  T+  L+++C  L    N G  VHAH +K GF    FV + LL+ Y 
Sbjct: 52  HLSLLDKQIDSS--TYASLLESCRTL----NLGKQVHAHTLKTGFHGHEFVETKLLQMYG 105

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +  A  +F K P R++ +WT ++  +   G FE A  LFEK+   +      +   
Sbjct: 106 RFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALSLFEKLQLDDIGLEFFVFPV 165

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA---ITQGLWVHSYAKRYHL 194
             ++     VL L RQ+  V           V+  CA +G+   I  G  V         
Sbjct: 166 VLKLCGGLRVLELGRQLHGV-----------VIKRCADMGSALKIFSGFSV--------- 205

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELF 252
            KNV+    ++  Y + G+V  A  +F+ +    KD  +WN+MISG A N    ++L +F
Sbjct: 206 -KNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMF 264

Query: 253 -DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
            D +++ G +    T  +VL  C     +R G  +    + V G+         +V++ +
Sbjct: 265 RDLLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQ-AVVRGLHWNTFVGGALVEMYS 323

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           +     E  K  +    G+   D   W  L+S      ++E    + +K+   G   F  
Sbjct: 324 KC----EDLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDG---FEP 376

Query: 372 HVLSYN 377
           +V ++N
Sbjct: 377 NVYTWN 382


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 140/361 (38%), Positives = 206/361 (57%), Gaps = 7/361 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENARELFEKMPERNA 128
           ++++  ++    M  A   F  +P++ D V WT MV GY  +G+   A E FE MP RN 
Sbjct: 146 NAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNL 205

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
           VSW+A++A Y + S   + L LFR M +E  ++PN S L SVL  C++L A+  G  +H 
Sbjct: 206 VSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQ 265

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           +  +  L +N+ + T++V MY KCG + SA  +F  +  +D  AWNAMISG A +GD K+
Sbjct: 266 WCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKE 325

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           ++ LF+RM   G +P   TFVAVLT C H  +   G+  FE M  +YG+EP+++HY+C+V
Sbjct: 326 AINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMV 385

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           DLL RAG +E A   I            + +G LL+ACR+Y  +E       KL E    
Sbjct: 386 DLLCRAGKLERAVDLIRSMP---FEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQ 442

Query: 368 DFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
               +V   NIY  A  WD + ++VR+ + +  + K PG S IE+ GV+ EF + D  H 
Sbjct: 443 SAGAYVQLANIYAGANQWD-DVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHP 501

Query: 427 Q 427
           Q
Sbjct: 502 Q 502



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 139/294 (47%), Gaps = 39/294 (13%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  AR LFD+ P  D V++ T++  +   GD + AR LF  MP R+ VSW+ +++  S+
Sbjct: 64  RLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSK 123

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               +E  ++F  M  V    + + +VS       + A  +  W  +  ++     + +L
Sbjct: 124 SGAVEEAKAVFLAM-PVRNSVSWNAMVSGFACSRDMSAAEE--WFRNAPEK----GDAVL 176

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SG 259
            TA+V  Y   G+V  A+  FE +  ++  +WNA+++G   N  A  +L LF  MV+ + 
Sbjct: 177 WTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            QP  +T  +VL  C+             N+SA+ G   Q+ H  C+   L+R   V  +
Sbjct: 237 VQPNASTLSSVLLGCS-------------NLSAL-GFGKQI-HQWCMKLPLSRNLTVGTS 281

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV-WRKLAEMGITDFSTH 372
              +  K G L            SAC+++G++   + V W  +    I+ ++ H
Sbjct: 282 LVSMYCKCGDLS-----------SACKLFGEMHTRDVVAWNAM----ISGYAQH 320



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 34/226 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY++ +    ++  +  M+ +   +PN  T   ++  C  L  L  FG  +H   +K
Sbjct: 211 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL-GFGKQIHQWCMK 269

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                +  V +SL+  Y     + +A  LF +   RDVV W  M+ GY + GD + A  L
Sbjct: 270 LPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINL 329

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+                               M++ G++PN    V+VLTAC H G  
Sbjct: 330 FER-------------------------------MKDEGVEPNWITFVAVLTACIHTGLC 358

Query: 180 TQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
             G+       + Y +E  V   + +VD+  + G +  A+ +   +
Sbjct: 359 DFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 17/174 (9%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR-ISDFKEVLSLFRQMQEVGM 159
           T  V    + GD   A E F   P +   +++ ++A Y+R +    +   LF ++     
Sbjct: 21  TVAVAAAVRRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRI----- 75

Query: 160 KPNESGL-VSVLTACAHLGAITQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVH 215
            P    +  + L +C        G      A+R       ++V+    +V   SK G V 
Sbjct: 76  -PTPDAVSYNTLLSCHFASGDADG------ARRLFASMPVRDVVSWNTMVSGLSKSGAVE 128

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            A +VF  +  +++ +WNAM+SG A + D   + E F    + G     T  V+
Sbjct: 129 EAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVS 182


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 232/431 (53%), Gaps = 36/431 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ Q N P+ ++  +  ML +G +PN++T   L+KA      L+  G  +HA  +K+
Sbjct: 160 LIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDP-GTQLHAFCLKY 218

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+    +V S+L                               VD Y + G  + A+  F
Sbjct: 219 GYQSSVYVGSAL-------------------------------VDMYARCGHMDAAQLAF 247

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP ++ VSW+A+++ ++R  + +  L L  +MQ    +P      SV +ACA +GA+ 
Sbjct: 248 DGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALE 307

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG WVH++  +  L+    +   ++DMY+K G +  A  VF+ +   D  +WN M++G A
Sbjct: 308 QGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCA 367

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  K++L+ F++M++ G +P E +F+ VLT C+H+ ++ +GL  FE M   Y VEP +
Sbjct: 368 QHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDV 426

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
            HY   VDLL R G+++ AE+FI E         A VWGALL ACR++  +E+G     +
Sbjct: 427 PHYVTFVDLLGRVGLLDRAERFIREMP---IEPTAAVWGALLGACRMHKNMELGVYAAER 483

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
             E+   D    +L  NIY  AG   +  KVRK++ E+G+KK+P CS +E+   V  F+A
Sbjct: 484 AFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVA 543

Query: 421 GDNRHAQAGEI 431
            D  H Q  EI
Sbjct: 544 NDETHPQIKEI 554



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 170/343 (49%), Gaps = 59/343 (17%)

Query: 19  LDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           LD++  G   P+   +  L+K C  LG +E  G  VHAH+V   F ++  V+ +++    
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQ-GRIVHAHLVDSHFLDNHLVLQNII---- 129

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     V+ Y K G  ++AR +F++MP ++ V+W+A++A 
Sbjct: 130 --------------------------VNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAG 163

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +S+ +  ++ L LF QM  +G++PN   L S+L A      +  G  +H++  +Y  + +
Sbjct: 164 FSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSS 223

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + +A+VDMY++CGH+ +A   F+G+  K   +WNA+ISG A  G+ + +L L  +M +
Sbjct: 224 VYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQR 283

Query: 258 SGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
              QPT  T+ +V + C            HA M++ GL L   +               +
Sbjct: 284 KNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNT------------L 331

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +D+ A+AG +++A++  +     L   D   W  +L+ C  +G
Sbjct: 332 LDMYAKAGSIDDAKRVFDR----LVKPDVVSWNTMLTGCAQHG 370


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 237/441 (53%), Gaps = 41/441 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK- 59
           MI GY++    + ++  + +M+     P+  T   ++ AC   G +E  G  VH+ V   
Sbjct: 167 MITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIE-LGRQVHSWVDDD 225

Query: 60  ---FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
               GF     +V++L++ YS                               K GD E A
Sbjct: 226 DDDHGFSSSLKIVNALIDLYS-------------------------------KCGDVETA 254

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
             LFE +  ++ VSW+ ++  Y+  + +KE L LF++M   G  PN+  L+SVL ACAHL
Sbjct: 255 FGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHL 314

Query: 177 GAITQGLWVHSY--AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           GAI  G W+H Y   K   +     L T+++DMY+KCG + +A  VF  +  +   +WNA
Sbjct: 315 GAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNA 374

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           MI G AM+G A  + +LF RM  +  +P + TFV +L+ C+H+ ++  G  +F++M+  Y
Sbjct: 375 MIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDY 434

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            + P+LEHY C++DLL  +G+ +EAE+ I          D  +W +LL AC+ +G +E+ 
Sbjct: 435 NLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMP---MEPDGVIWCSLLKACKKHGNLELA 491

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
               +KL ++   +  ++VL  NIY  AG   +  +VR +++  GMKK PGCS IEV+ V
Sbjct: 492 ESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSV 551

Query: 415 VEEFLAGDNRHAQAGEIYRVI 435
           V EF+ GD  H +  EIY ++
Sbjct: 552 VHEFIIGDKLHPRRREIYHML 572



 Score =  217 bits (553), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 123/400 (30%), Positives = 214/400 (53%), Gaps = 39/400 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+RG+  ++ P  ++  Y+ M+ +G  PN+Y+FP L+K+C      E  G  +HA V+K 
Sbjct: 35  MLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSKAFEE-GRQIHAQVLKL 93

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G G D +V +SL+  Y+    +  AR +FD S  RDVV+ T ++ GY   GDF +AR++F
Sbjct: 94  GCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVF 153

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++ ER+ VSW+A++  Y     ++E L LF++M    ++P+E  LVSV++ACA  G+I 
Sbjct: 154 DEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIE 213

Query: 181 QGLWVHSYA----KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            G  VHS+       +    ++ +  A++D+YSKCG V +A  +FEG+S KD  +WN +I
Sbjct: 214 LGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLI 273

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVY 294
            G       K++L LF  M++SG  P + T ++VL  C H   +  G  ++++ +   + 
Sbjct: 274 GGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYID-KKLK 332

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM-GGLGGGDANVWG-------------- 339
           GV  +      ++D+ A+ G +E A +     +   L   +A ++G              
Sbjct: 333 GVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLF 392

Query: 340 ----------------ALLSACRIYGKIEVGNRVWRKLAE 363
                            LLSAC   G +++G ++++ + +
Sbjct: 393 SRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQ 432



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 128/265 (48%), Gaps = 15/265 (5%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE----RNAVSWSAIMAAYSR 140
           A ++F+   + +++ W TM+ G+    D  +A E++ +M       N+ S+  ++ + ++
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
              F+E   +  Q+ ++G   +     S+++  A  G +     V   +      ++V+ 
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASS----HRDVVS 132

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA++  Y+  G   SA  VF+ I+ +D  +WNAMI+G   NG  +++LELF  M+++  
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFE---NMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           +P E T V+V++ C  +  +  G  +     +    +G    L+    ++DL ++ G VE
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252

Query: 318 EAEKFIEEKMGGLGGGDANVWGALL 342
            A    E    GL   D   W  L+
Sbjct: 253 TAFGLFE----GLSCKDVVSWNTLI 273


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 246/438 (56%), Gaps = 39/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +      +V  + +M++ GF+PN  +   ++ AC  LG L            K 
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL------------KL 246

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + FVV + +   +L + MG+A                 ++  YGK GD  +AR +F
Sbjct: 247 GTWVEEFVVENKM---TLNYFMGSA-----------------LIHMYGKCGDLVSARRIF 286

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M +++ V+W+A++  Y++    +E + LF+ M+     P++  L+ +L+ACA +GA+ 
Sbjct: 287 DSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALD 346

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V  YA     + +V + TA+VDMY+KCG + +A  VF G+  K+  +WNAMIS +A
Sbjct: 347 LGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALA 406

Query: 241 MNGDAKKSLELFDRMVKSG--TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            +G A+++L LF  M+  G    P + TFV VL+ C HA +V +G  LF  MS+ +G+ P
Sbjct: 407 FHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVP 466

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           ++EHY+C+VDL +RAG +EEA  F+   M      D  + GALL AC+    I++  RV 
Sbjct: 467 KIEHYSCMVDLFSRAGHLEEAWDFV---MTMPEKPDEVILGALLGACQKRKNIDISERVM 523

Query: 359 RKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           + L E+  ++   +V+S  +Y     WD ++ ++R L+ + G+ K PGCS I++N  + E
Sbjct: 524 KLLLELEPSNSGNYVISSKLYANLRRWD-DSARMRMLMKQKGVSKTPGCSWIDINSQLHE 582

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F AGD  H +  EI++++
Sbjct: 583 FHAGDVLHQEWIEIHQIL 600



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/368 (31%), Positives = 182/368 (49%), Gaps = 38/368 (10%)

Query: 1   MIRGYMQA-NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MIRG   A N   L++  Y  M  +G +PNN T+P L  AC  L  +EN G   H  V++
Sbjct: 97  MIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVEN-GRMGHCSVIR 155

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G  ED  V  SL+  Y+   KMG AR +FD+   +D+V+W +M+ GY KM         
Sbjct: 156 RGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKM--------- 206

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                 R+A                 E + LFR+M E G +PNE  LVSVL AC  LG +
Sbjct: 207 ------RHA----------------GEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDL 244

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G WV  +     +  N  + +A++ MY KCG + SA  +F+ +  KD   WNAMI+G 
Sbjct: 245 KLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGY 304

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A NG ++++++LF  M  S T P + T + +L+ C     +  G  + E  ++  G +  
Sbjct: 305 AQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQV-EIYASERGFQDD 363

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +     +VD+ A+ G ++ A +       G+   +   W A++SA   +G+ +    +++
Sbjct: 364 VYVGTALVDMYAKCGSLDNAFRVFY----GMPKKNEVSWNAMISALAFHGQAQEALALFK 419

Query: 360 KLAEMGIT 367
            +   G T
Sbjct: 420 SMMNEGGT 427



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 31/290 (10%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV-LSLFRQMQEVGMKPNESGLVS 168
           + DF  A   F  + +    S++ ++   S   +   + L  + +M+ +G+KPN      
Sbjct: 73  LKDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPF 132

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +  AC++L A+  G   H    R  L+++  ++ +++ MY++CG +  A  VF+ IS KD
Sbjct: 133 LFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKD 192

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             +WN+MISG +    A +++ LF  M+++G QP E + V+VL  C     ++ G  + E
Sbjct: 193 LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEE 252

Query: 289 -----NMSAVYGVEPQLEH-YACVVDLL------------------------ARAGMVEE 318
                 M+  Y +   L H Y    DL+                        A+ GM EE
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           A K  ++        D      +LSAC   G +++G +V    +E G  D
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQD 362


>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
          Length = 505

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/439 (34%), Positives = 232/439 (52%), Gaps = 40/439 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y   + P+ ++  YL+M  +G  P+  TFP L+KAC  +    N G  +   V+K 
Sbjct: 90  LIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAF-NEGRKIQVDVMKH 148

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                D +V    TM+  YG      +AR +F
Sbjct: 149 GL-------------------------------DCNVYVQNTMIHFYGSCKRIRDARRMF 177

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M  R  VSW+A+++A        +   LF +M+  G  P+E+ +V +L+AC+ LG ++
Sbjct: 178 DEMSYRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLS 237

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHS      +  N  L TA+VDMY+KCG V  A  VF  +  ++   W+AMI G+A
Sbjct: 238 FGRWVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLA 297

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G AK++LELF +M +S   P   TF+ VL  C+HA +V DG   F +M  V+G+EP +
Sbjct: 298 QHGFAKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMM 357

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE---VGNRV 357
            HY  +VD+L+RAG ++EA  FI   +      D  VW  LLSAC I+G  +   VG++V
Sbjct: 358 IHYGAMVDILSRAGRLKEAYNFI---LNMPVEADPVVWRTLLSACTIHGINDNDGVGDKV 414

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
            ++L E+        V+  N+Y E G WD  AN VR+ + +TG+KK  G S IEV G + 
Sbjct: 415 RKRLLELEPRRSGNFVMVANMYAEVGKWDKAAN-VRRTMKDTGLKKMAGESCIEVGGSIH 473

Query: 417 EFLAGDNRHAQAGEIYRVI 435
            F +GD+      ++ +++
Sbjct: 474 RFFSGDDPQLDCEDVLQLL 492



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 107/240 (44%), Gaps = 29/240 (12%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +G+  +AR L     +    SW+ ++ +Y+     +E +  + +M+ +G+ P++     +
Sbjct: 66  LGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPIL 125

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L ACA + A  +G  +     ++ L+ NV +   ++  Y  C  +  A  +F+ +S +  
Sbjct: 126 LKACAXISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTV 185

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAK 278
            +WNA++S    N     S  LF +M  SG  P ETT V +L+ C+           H++
Sbjct: 186 VSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQ 245

Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
           ++  G+ +   +               +VD+ A+ G V EA       +      + NVW
Sbjct: 246 VIEKGMVVNCRLGTA------------LVDMYAKCGAVCEASLVFHRML------ERNVW 287


>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
          Length = 644

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 236/432 (54%), Gaps = 15/432 (3%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGED-PFVVSSLLEFYS 77
           DM   G E N  +    + AC   G L    G  +H + V  G      FV +SL+  Y 
Sbjct: 200 DMHRSGCEGNAESVAVALSACPYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYG 259

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER------NAVSW 131
            + KM  AR +F ++ +R+ VTW  ++  Y   G  + A  +  +M +R      N +SW
Sbjct: 260 KLGKMDDAREVFREAGERNTVTWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSW 319

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
           SA++  ++   D +  L LFR+MQ+  + PN   L +VL+AC    A+  G  VH+ A R
Sbjct: 320 SAVIGGFASSGDNERALELFRRMQQQWLSPNVVTLATVLSACTEQLAVRLGREVHADAIR 379

Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
             ++++ ++A  +++MY+KCG V  A +VF+G+ ++D  +WN+M++G  M+G    +L +
Sbjct: 380 SMVDRHSLVANGLINMYAKCGRVADARTVFDGMKSRDLVSWNSMLAGYGMHGLCDDALAV 439

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
           F  M ++   P   TFVAVL+ C+HA  V +G  LF+ M   + + P +EHY C+VDLL 
Sbjct: 440 FTDMAEAKVDPDGVTFVAVLSACSHAGRVSEGRRLFDQMILEHKISPSMEHYTCMVDLLG 499

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           RAG+++EA +FIE       G D  VWGALL++CRI+G   +      K  + G+     
Sbjct: 500 RAGLLKEASEFIETMP---MGADLCVWGALLNSCRIHGDAAMAEATIAKALQAGVVTTGN 556

Query: 372 HVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD--NRHAQA 428
           H L  N+Y   G WD ++ +VR +  E G++K PG S +EV   V  F+AG       +A
Sbjct: 557 HTLITNLYAACGMWD-DSKRVRVMTREAGLRKNPGQSWVEVKNKVFAFMAGSVPPSMPRA 615

Query: 429 GEIYRVIHSFLK 440
            +++RV+    +
Sbjct: 616 EDVFRVLDDLYR 627



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/443 (23%), Positives = 185/443 (41%), Gaps = 66/443 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++R ++  + P L++  Y  M  +    PN+YT P  ++A     P+ +    +HAH + 
Sbjct: 46  LLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAAT--SPIASA---IHAHALH 100

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARE 118
            G    P V   LL  Y+   +   A  +FD  P  R  ++W T++  Y    D  NA  
Sbjct: 101 LGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDPNNAMA 160

Query: 119 LFEKMPER-----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
            F +M        +AV+W+ +++A++R      VL LF  M   G + N   +   L+AC
Sbjct: 161 TFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAVALSAC 220

Query: 174 AHLG--AITQGLWVHSYAKRYHLEKNVILAT-AVVDMYSKCGHVHSALSVFEGISNKDAG 230
            + G  A+ +G  +H Y     + +  +  T ++V MY K G +  A  VF     ++  
Sbjct: 221 PYAGDLALAKGRAIHGYGVAKGVVRGYLFVTNSLVCMYGKLGKMDDAREVFREAGERNTV 280

Query: 231 AWNAMIS-------------------------------------GVAMNGDAKKSLELFD 253
            WNA+I+                                     G A +GD +++LELF 
Sbjct: 281 TWNALITSYAAAGMCDEALNVLVRMEQRGGMVAPNVMSWSAVIGGFASSGDNERALELFR 340

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDL 309
           RM +    P   T   VL+ CT    VR G  +  +      +   ++ ++ V    +++
Sbjct: 341 RMQQQWLSPNVVTLATVLSACTEQLAVRLGREVHAD-----AIRSMVDRHSLVANGLINM 395

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TD 368
            A+ G V +A    +    G+   D   W ++L+   ++G  +    V+  +AE  +  D
Sbjct: 396 YAKCGRVADARTVFD----GMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPD 451

Query: 369 FSTHVLSYNIYKEAGWDMEANKV 391
             T V   +    AG   E  ++
Sbjct: 452 GVTFVAVLSACSHAGRVSEGRRL 474



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 34/188 (18%)

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGL-------VSVLTACAH 175
           P   AV W+ ++ A+   S     L+L+R+M+ +    PN   L        S + +  H
Sbjct: 36  PTTCAVPWNRLLRAHICRSRPDLALALYRRMRALSPTLPNSYTLPLALRAATSPIASAIH 95

Query: 176 LGAITQGLWVH---------SYAKR------YHL------EKNVILATAVVDMYSKCGHV 214
             A+  GL  H         +YA+       +H+      ++  +    ++  YS C   
Sbjct: 96  AHALHLGLHAHPDVAGQLLAAYARHGRADEAHHVFDAMPSKRATMSWNTLISAYSVCCDP 155

Query: 215 HSALSVFE-----GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           ++A++ F      G +  DA  W  ++S  A  G     LELF  M +SG +    +   
Sbjct: 156 NNAMATFARMAAAGEALPDAVTWTTLLSAHARCGKHPVVLELFGDMHRSGCEGNAESVAV 215

Query: 270 VLTTCTHA 277
            L+ C +A
Sbjct: 216 ALSACPYA 223


>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 249/464 (53%), Gaps = 40/464 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           + +G++  + P  S+  Y+ ML     P++YT+  L+KA         FG  + AH+ KF
Sbjct: 97  LFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS---RFGESLQAHIWKF 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---------------- 104
           GFG    + ++L++FYS   ++  AR +FD+ P+RD + WTTMV                
Sbjct: 154 GFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLA 213

Query: 105 ---------------DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                          +GY  +G+ E A  LF +MP ++ +SW+ ++  YS+   ++E ++
Sbjct: 214 NQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIA 273

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F +M E G+ P+E  + +V++ACAHLG +  G  VH Y  +     +V + +A+VDMYS
Sbjct: 274 VFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYS 333

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  AL VF  +  K+   WN++I G+A +G A+++L++F +M     +P   TFV+
Sbjct: 334 KCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVS 393

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           V T CTHA +V +G  ++ +M   Y +   +EHY  +V L ++AG++ EA + I    G 
Sbjct: 394 VFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI----GN 449

Query: 330 LG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
           +    +A +WGALL  CRI+  + +    + KL  +   +   + L  ++Y E     + 
Sbjct: 450 MEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDV 509

Query: 389 NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
            ++R  + E G++K  PG S I ++     F A D  H+ + E+
Sbjct: 510 AEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEV 553



 Score = 40.8 bits (94), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           A+S    +   +   +NA+  G        +SLEL+ RM++    P+  T+ +++   + 
Sbjct: 79  AVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF 138

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
           A   R G +L  ++   +G    ++    ++D  +  G + EA K  +E    +   D  
Sbjct: 139 AS--RFGESLQAHIWK-FGFGFHVKIQTTLIDFYSATGRIREARKVFDE----MPERDDI 191

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAE 363
            W  ++SA R    ++  N +  +++E
Sbjct: 192 AWTTMVSAYRRVLDMDSANSLANQMSE 218


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 252/445 (56%), Gaps = 37/445 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGP-LENFGMFVHAHVV 58
           MI GY++  F   ++  +++M+ ++G  PN+ T   ++ ACV     L+  G  +H+ VV
Sbjct: 360 MIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEG--IHSCVV 417

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K+GF +D +V ++L++ YS + ++  AR++F     +D+V+W TM+ GY   G  ++A  
Sbjct: 418 KWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALN 477

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           L   M    A           RI+ F +    +   +   +KPN   L++VL  CA L A
Sbjct: 478 LLHDMQRGQA---------EHRINTFDD----YEDNKNFPLKPNSVTLMTVLPGCAALAA 524

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + +G  +H+YA +  L K+V + +A+VDMY+KCG ++ + +VFE +S ++   WN +I  
Sbjct: 525 LGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMA 584

Query: 239 VAMNGDAKKSLELFDRMVKSG-----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
             M+G  +++L+LF RMV+ G      +P E T++A+  + +H+ MV +GLNLF  M A 
Sbjct: 585 YGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAK 644

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+EP  +HYAC+VDLL R+G +EEA   I+     +   DA  W +LL AC+I+  +E+
Sbjct: 645 HGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDA--WSSLLGACKIHQNLEI 702

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G     ++A   +     +VL Y   +     M   K++    E G++K+PGCS IE   
Sbjct: 703 G-----EIAAKNLFVLDPNVLDYGTKQS----MLGRKMK----EKGVRKEPGCSWIEHGD 749

Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSF 438
            V +FLAGD  H Q+ E++  + + 
Sbjct: 750 EVHKFLAGDVSHPQSKEVHEYLETL 774



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 138/268 (51%), Gaps = 34/268 (12%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++  Y +M+  G  P+N+ FP ++KA   +  L N G  +HAHV KFG            
Sbjct: 69  AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDL-NLGKQLHAHVFKFG------------ 115

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
                       +AL    P+       ++V+ YGK GD + AR +F+++  R+ VSW++
Sbjct: 116 ------------QALPTAVPN-------SLVNMYGKCGDIDAARRVFDEITNRDDVSWNS 156

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL-GAITQGLWVHSYAKRY 192
           ++ A  R  +++  + LFR M    + P    LVSV  AC++L   +  G  VH++  R 
Sbjct: 157 MINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLR- 215

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           + +       A+V MY+K G V+ A ++F+   +KD  +WN +IS ++ N   +++L   
Sbjct: 216 NGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYL 275

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMV 280
             M++SG +P   T  +VL  C+H +M+
Sbjct: 276 HVMLQSGVRPNGVTLASVLPACSHLEML 303



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 27/338 (7%)

Query: 91  KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL 150
           ++ D    T   +V  Y K+G    A+ LF+   +++ VSW+ I+++ S+   F+E L  
Sbjct: 215 RNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLY 274

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNVILATAVVDMYS 209
              M + G++PN   L SVL AC+HL  +  G  +H++      L +N  +  A+VDMY 
Sbjct: 275 LHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYC 334

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFV 268
            C        VF+G+  +    WNAMI+G   N    +++ELF  MV + G  P   T  
Sbjct: 335 NCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLS 394

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
           +VL  C   +   D   +  +    +G E        ++D+ +R G +E A        G
Sbjct: 395 SVLPACVRCESFLDKEGI-HSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIF----G 449

Query: 329 GLGGGDANVWGALLSACRIYGK----IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
            +   D   W  +++   + G+    + + + + R  AE  I  F               
Sbjct: 450 SMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFD-------------- 495

Query: 385 DMEANK--VRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           D E NK    K  S T M   PGC+ +   G  +E  A
Sbjct: 496 DYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHA 533



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 146/368 (39%), Gaps = 63/368 (17%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G  PN  T   ++ AC              +H+   G G++             +H
Sbjct: 278 MLQSGVRPNGVTLASVLPAC--------------SHLEMLGCGKE-------------IH 310

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
               A  L +     +      +VD Y      E  R +F+ M  R    W+A++A Y R
Sbjct: 311 ----AFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVR 366

Query: 141 ISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
                E + LF +M  E+G+ PN   L SVL AC    +      +HS   ++  EK+  
Sbjct: 367 NEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKY 426

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           +  A++DMYS+ G +  A S+F  ++ KD  +WN MI+G  + G    +L L   M +  
Sbjct: 427 VQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQ 486

Query: 260 TQ------------------PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
            +                  P   T + VL  C     +  G  +       Y V+  L 
Sbjct: 487 AEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIH-----AYAVKQMLS 541

Query: 302 HYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
               V    VD+ A+ G +  +    E+    +   +   W  L+ A  ++GK E   ++
Sbjct: 542 KDVAVGSALVDMYAKCGCLNLSRTVFEQ----MSVRNVITWNVLIMAYGMHGKGEEALKL 597

Query: 358 WRKLAEMG 365
           +R++ E G
Sbjct: 598 FRRMVEEG 605



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 70/135 (51%)

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
           S F + +S +  M   G+ P+     +VL A A +  +  G  +H++  ++       + 
Sbjct: 64  STFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVP 123

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            ++V+MY KCG + +A  VF+ I+N+D  +WN+MI+      + + ++ LF  M+     
Sbjct: 124 NSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVG 183

Query: 262 PTETTFVAVLTTCTH 276
           PT  T V+V   C++
Sbjct: 184 PTSFTLVSVAHACSN 198


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 234/438 (53%), Gaps = 41/438 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVK 59
           +I GY   +    +V  +  M   G   N  T   LI  C   GP+   FG  +HA  V+
Sbjct: 130 LIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCA--GPIHLGFGTSLHACSVR 187

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           FG   D  V + LL  Y                                + G  + AR+L
Sbjct: 188 FGLDGDLSVGNCLLTMYV-------------------------------RCGSVDFARKL 216

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ MPE+  ++W+A+++ Y++      VL L+R+M+  G+ P+   LV VL++CAHLGA 
Sbjct: 217 FDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAH 276

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  V    +      N  L  A+++MY++CG++  A ++F+G++ K+  +W A+I+G 
Sbjct: 277 AAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGY 336

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            M+G  + +++LFD M+ S   P    FV+VL+ C+HA +   GL  F  M   YG++P 
Sbjct: 337 GMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPG 396

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVW 358
            EHY+CVVDLL RAG +EEA K I    G +    D  VWGALL AC+I+  +E+    +
Sbjct: 397 PEHYSCVVDLLGRAGRLEEARKLI----GSMSVEPDGAVWGALLGACKIHRNVELAELAF 452

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEAN-KVRKLISETGMKKKPGCSVIEVNGVVEE 417
            K+ E   T+   +VL  NI+ EAG +ME   +VR ++ E  +KK+PGCS +E  G +  
Sbjct: 453 EKVIEFEPTNIGYYVLLSNIFSEAG-NMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHL 511

Query: 418 FLAGDNRHAQAGEIYRVI 435
           FLAGD  H QA EIY ++
Sbjct: 512 FLAGDRTHPQAQEIYHML 529



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 175/349 (50%), Gaps = 45/349 (12%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           Y  ML  G  PN +TFP   K+C  L  PL   G  +H HV+K G   +PFV +SL+  Y
Sbjct: 44  YCQMLASGDSPNAFTFPFAFKSCASLSLPLA--GSQLHGHVIKTGCEPEPFVQTSLISMY 101

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
                + +AR +FD++                      ++R L        AV ++A++A
Sbjct: 102 CKCSTIASARKVFDEN---------------------HHSRNL--------AVCYNALIA 132

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA---HLGAITQGLWVHSYAKRYH 193
            YS  S F + + LFRQM++ G+  N   ++ ++  CA   HLG    G  +H+ + R+ 
Sbjct: 133 GYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGF---GTSLHACSVRFG 189

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           L+ ++ +   ++ MY +CG V  A  +F+G+  K    WNAMISG A NG A   L+L+ 
Sbjct: 190 LDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYR 249

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS-AVYGVEPQLEHYACVVDLLAR 312
           +M  +G  P   T V VL++C H      G  + + +  + +G  P L++   ++++ AR
Sbjct: 250 KMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYAR 307

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
            G + +A    +    G+   +   W A+++   ++G+ E+  +++ ++
Sbjct: 308 CGNLVKARAIFD----GMTEKNVISWTAIIAGYGMHGQGELAVQLFDEM 352



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 7/222 (3%)

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           +    SW+A +   +R   F+E L+L+ QM   G  PN         +CA L     G  
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE--GISNKDAGAWNAMISGVAMN 242
           +H +  +   E    + T+++ MY KC  + SA  VF+    S   A  +NA+I+G ++N
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
                ++ LF +M K G      T + ++  C     +  G +L    S  +G++  L  
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSL-HACSVRFGLDGDLSV 196

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
             C++ +  R G V+ A K  +    G+       W A++S 
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFD----GMPEKGLITWNAMISG 234


>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
          Length = 648

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 211/394 (53%), Gaps = 5/394 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + DM   G+  +      ++ AC  L    N G   H    + G G    V ++L+  YS
Sbjct: 254 FSDMRGEGWPVDEAVMVCVVAACARLEVTRN-GEMCHGLAFRAGLGSRLNVQNALIHMYS 312

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +  AR LFD     D  +W +M+ GY K G  ++A+ELF  MP+++ VSW+ +++ 
Sbjct: 313 SFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISG 372

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             +     E L++F  MQ  G+KP+E  LVSV++AC ++ ++ QG  +H Y + +     
Sbjct: 373 CVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTIT 432

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           VIL T+++DMY KCG + SAL VF+ +  +    WNA+I G+AMNG   KSL++F  M  
Sbjct: 433 VILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMES 492

Query: 258 SGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
           S T  P E TF  VL+ C HA +V +G + F+ M   Y + P + HY C+VDLL RAG V
Sbjct: 493 SSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYV 552

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +EAE  IE         D   WGALL +C  +G  EVG RV RKL  +       H +  
Sbjct: 553 KEAENLIESMP---MSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLS 609

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           NIY   G       +R  + +  + K PG SV+E
Sbjct: 610 NIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVE 643



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 154/355 (43%), Gaps = 40/355 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +++   +   P L +  Y  M      P+ YT   L  AC     +E  G  VH H V+ 
Sbjct: 77  VLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEE-GRQVHCHAVRH 132

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG + ++ ++L+  YS    +G AR +FD  P  D V+W T++  Y +  D + A  +F
Sbjct: 133 GFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVF 192

Query: 121 EKMPERNAV-------------------------------SWSAIMAAYSRISDFKEVLS 149
            +MPER A                                +W+A+++ + R   F E L+
Sbjct: 193 ARMPERGAAAVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALA 252

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LF  M+  G   +E+ +V V+ ACA L     G   H  A R  L   + +  A++ MYS
Sbjct: 253 LFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYS 312

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
              +V +A  +F+     D  +WN+MI+G   NG  K + ELF  M          ++  
Sbjct: 313 SFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVM----PDKDNVSWTT 368

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           +++ C       + L +F NM A  G++P       V+        +E+ +   E
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQA-QGIKPDEVTLVSVISACTNMSSLEQGKSMHE 422



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 92/238 (38%), Gaps = 47/238 (19%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F ++  L   +   NA S + ++ A          L L+  M      P+      +  A
Sbjct: 56  FHHSLRLLHVVHRPNAFSCNMVLKAAREHGLPHLCLPLYASMSAA---PDCYTHTILAAA 112

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA   AI +G  VH +A R+   +N+ LA A++ MYS CG +  A  VF+     DA +W
Sbjct: 113 CATRRAIEEGRQVHCHAVRHGFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSW 172

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N +++      D  +++ +F RM + G     +                           
Sbjct: 173 NTILAAYVQAEDVDQAVGVFARMPERGAAAVSS--------------------------- 205

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                        +V L  R GMV+EA K  +    G+   D   W A++S  +  GK
Sbjct: 206 -------------MVSLFGRRGMVDEARKVFD----GVERKDVFTWTAMISCFQRNGK 246


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 236/459 (51%), Gaps = 48/459 (10%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M   GFEPN+ +    I AC  L  LE  G  +H   VK GF  D +V S+L++ Y    
Sbjct: 132 MESSGFEPNSVSLTVAISACSRLLWLER-GKEIHRKCVKKGFELDEYVNSALVDMYGKCD 190

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM----------------- 123
            +  AR +F K P + +V W +M+ GY   GD ++  E+  +M                 
Sbjct: 191 CLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILM 250

Query: 124 ---PERN-----------------------AVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157
                RN                       A SW+ ++++Y  + ++ + + ++ QM  V
Sbjct: 251 ACSRSRNLLHGKFIHANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSV 310

Query: 158 GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
           G+KP+     SVL AC+ L A+ +G  +H       LE + +L +A++DMYSKCG+   A
Sbjct: 311 GVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEA 370

Query: 218 LSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
             +F  I  KD  +W  MIS    +G  +++L  FD M K G +P   T +AVL+ C HA
Sbjct: 371 FRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHA 430

Query: 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337
            ++ +GL  F  M + YG+EP +EHY+C++D+L RAG + EA + I++        +A +
Sbjct: 431 GLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPE--TSDNAEL 488

Query: 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLIS 396
              L SAC ++ +  +G+R+ R L E    D ST+++ +N+Y     WD  A +VR  + 
Sbjct: 489 LSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDA-ARRVRLKMK 547

Query: 397 ETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           E G++KKPGCS IE++  V  F A D  H +A  +Y  +
Sbjct: 548 EMGLRKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYECL 586



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 152/310 (49%), Gaps = 13/310 (4%)

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV---------SWSAIMAAYSRISDFK 145
           RDVV   ++++ Y    D  +AR +FE    R+ V         SW+ +++ + +  + +
Sbjct: 64  RDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWNTVISCFYQSGEAE 123

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + L LF +M+  G +PN   L   ++AC+ L  + +G  +H    +   E +  + +A+V
Sbjct: 124 KALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALV 183

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY KC  +  A  VF+ +  K   AWN+MI G    GD+K  +E+ +RM+  GT+P++T
Sbjct: 184 DMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQT 243

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARAGMVEEAEKF 322
           T  ++L  C+ ++ +  G  +  N++     + Q    E +  ++      G   +A + 
Sbjct: 244 TLTSILMACSRSRNLLHGKFIHANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEV 303

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKE 381
            ++ +      D   + ++L AC     +E G ++   ++E  + TD        ++Y +
Sbjct: 304 YDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSK 363

Query: 382 AGWDMEANKV 391
            G + EA ++
Sbjct: 364 CGNEKEAFRI 373



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 118/266 (44%), Gaps = 45/266 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+GY+     K  V     M+  G  P+  T   ++ AC     L + G F+HA++ + 
Sbjct: 213 MIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLH-GKFIHANLAET 271

Query: 61  GFGEDPFVVSS----LLEFYSLVHKMGTARALFDK----SPDRDVVTWTT---------- 102
            F +    V+     ++  Y  V     A  ++D+        DVVT+T+          
Sbjct: 272 VFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAA 331

Query: 103 -------------------------MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                    ++D Y K G+ + A  +F  +P+++ VSW+ +++A
Sbjct: 332 LEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISA 391

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK-RYHLEK 196
           Y      +E L  F +MQ+ G+KP+   L++VL+AC H G I +GL   S  + +Y +E 
Sbjct: 392 YGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEP 451

Query: 197 NVILATAVVDMYSKCGHVHSALSVFE 222
            +   + ++D+  + G +  A  + +
Sbjct: 452 IIEHYSCMIDILGRAGRLLEAYEIIQ 477



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 88/194 (45%), Gaps = 25/194 (12%)

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAH-LGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           +S+    ++  ++   S L+S+L  C +   ++ +   VH       L ++V+L  ++++
Sbjct: 15  ISISHDKKKCELEMESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLIN 74

Query: 207 MYSKCGHVHSALSVFEGISNKD---------AGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           +Y  C    SA  VFE    +          + +WN +IS    +G+A+K+LELF RM  
Sbjct: 75  VYFTCKDHCSARHVFENFDIRSDVYIWNSLMSASWNTVISCFYQSGEAEKALELFGRMES 134

Query: 258 SGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSA----VYGVEPQLEH 302
           SG +P   +    ++ C+           H K V+ G  L E +++    +YG    LE 
Sbjct: 135 SGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEV 194

Query: 303 YACVVDLLARAGMV 316
              V   + R  +V
Sbjct: 195 AREVFQKMPRKSLV 208


>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
 gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
 gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
          Length = 509

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/326 (40%), Positives = 195/326 (59%), Gaps = 11/326 (3%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
           DVV W  +VD Y K GD   A   F +MP ++N VSW+ +M+A++R  + +E L+LF++M
Sbjct: 187 DVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSAFARAGELEEALALFQEM 246

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
           Q   ++P+++  V+ L ACA LGA+  G W+H+Y  R     + ++  A++DMY+KCG V
Sbjct: 247 QAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAV 306

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             A  VF+G++ +D   + +MI G+AM+G  + +L LF  M ++G  P E T + VLT C
Sbjct: 307 DQATEVFDGMARRDVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTPNEVTLLGVLTAC 366

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334
            HA +V +GL     M      EP++EHY CVVD+L RAG +++AE+ I          D
Sbjct: 367 CHAGLVEEGLQQLNAMP-----EPRIEHYGCVVDMLGRAGRLDKAEELIAAMP---VHSD 418

Query: 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394
           A +W +LL+ACR +G +E   RV R+   +   D   +VL  N Y   G   EA KVR  
Sbjct: 419 ALIWSSLLAACRAHGDVERAERVMRR--RVADADAGDYVLMSNTYASNGRHGEAVKVRGQ 476

Query: 395 ISETGMKKKPGCSVIEVNGVVEEFLA 420
           +    + K PGCS+IE++GVV EF A
Sbjct: 477 MRRNEIDKVPGCSLIEIDGVVHEFKA 502



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 115/257 (44%), Gaps = 37/257 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  + +A   + ++  + +M      P++ TF   + AC  LG L+  G ++HA++ + 
Sbjct: 226 MMSAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDT-GRWLHAYMGRM 284

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  V ++LL+ Y+    +  A  +FD    RDV T+T+M+ G    G  E+A    
Sbjct: 285 GHSADGVVGNALLDMYAKCGAVDQATEVFDGMARRDVYTYTSMILGLAMHGRGEDA---- 340

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                      LSLF  MQ  G+ PNE  L+ VLTAC H G + 
Sbjct: 341 ---------------------------LSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVE 373

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGV 239
           +GL   +      +E        VVDM  + G +  A  +   +  + DA  W+++++  
Sbjct: 374 EGLQQLNAMPEPRIEHY----GCVVDMLGRAGRLDKAEELIAAMPVHSDALIWSSLLAAC 429

Query: 240 AMNGDAKKSLELFDRMV 256
             +GD +++  +  R V
Sbjct: 430 RAHGDVERAERVMRRRV 446



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 133/317 (41%), Gaps = 49/317 (15%)

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTWTTMVDGYGKMGDFENAR 117
           K G      V   L+E Y    ++ +ARAL D  P  RDVV+ T MV G+ + G  + A 
Sbjct: 78  KLGLDRRRAVRDGLVELYLARGELASARALVDGFPAGRDVVSCTAMVTGHARHGFLDEAV 137

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF  M +   V+  A+ AA +  +  +                              +G
Sbjct: 138 VLFFAMADDRCVAIDAVAAAAAFSACAQ------------------------------IG 167

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMI 236
            +  G   H       +  +V+   A+VDMY+KCG   +A   F  +   K+  +WN M+
Sbjct: 168 DLALGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMM 227

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           S  A  G+ +++L LF  M  +  +P + TFVA L  C     +  G  L   M      
Sbjct: 228 SAFARAGELEEALALFQEMQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMG----- 282

Query: 297 EPQLEHYA------CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
             ++ H A       ++D+ A+ G V++A +  +    G+   D   + +++    ++G+
Sbjct: 283 --RMGHSADGVVGNALLDMYAKCGAVDQATEVFD----GMARRDVYTYTSMILGLAMHGR 336

Query: 351 IEVGNRVWRKLAEMGIT 367
            E    ++  +   G+T
Sbjct: 337 GEDALSLFAGMQRAGVT 353


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 239/431 (55%), Gaps = 39/431 (9%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV 69
           FP  S+  +  M   G   +N+TFP ++KAC  L       + +H+ +VK+G G D FV 
Sbjct: 67  FPSHSLSYFFSMRSNGIPLDNFTFPFVLKACSRL----QINLHLHSLIVKYGLGSDIFVQ 122

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++L+  Y                               G  G  E A ++F++M ER++V
Sbjct: 123 NALICVY-------------------------------GYCGSLEMAVKVFDEMSERDSV 151

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           SWS ++A++       E L LF +MQ E  + P+E  ++SV++A +HLG +  G WV ++
Sbjct: 152 SWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAF 211

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             R     +V L TA++DM+S+CG +  ++ VFE ++ ++   W A+I+G+ ++G + ++
Sbjct: 212 IGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEA 271

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           L +F  M KSG QP   TF  VL  C+H  +V++G ++FE++  VYG++P L+HY C+VD
Sbjct: 272 LAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVD 331

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +L RAG++ EA  F+E         ++ +W  LL AC  +  + +  +V  K++++  + 
Sbjct: 332 ILGRAGLLNEAYDFVERMP---MKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQ 388

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
               VL  N+Y  AG  +E   +R  + E  + K+PGCS I V+  + EF++GDN H Q+
Sbjct: 389 NGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQS 448

Query: 429 GEIYRVIHSFL 439
            +I + + S +
Sbjct: 449 EDITKFLSSII 459


>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
 gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
          Length = 648

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 145/394 (36%), Positives = 211/394 (53%), Gaps = 5/394 (1%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + DM   G+  +      ++ AC  L    N G   H    + G G    V ++L+  YS
Sbjct: 254 FSDMRGEGWPVDEAVMVCVVAACARLEVTRN-GEMCHGLAFRAGLGSRLNVQNALIHMYS 312

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +  AR LFD     D  +W +M+ GY K G  ++A+ELF  MP+++ VSW+ +++ 
Sbjct: 313 SFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVMPDKDNVSWTTMISG 372

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
             +     E L++F  MQ  G+KP+E  LVSV++AC ++ ++ QG  +H Y + +     
Sbjct: 373 CVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQYTIT 432

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           VIL T+++DMY KCG + SAL VF+ +  +    WNA+I G+AMNG   KSL++F  M  
Sbjct: 433 VILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFSEMES 492

Query: 258 SGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
           S T  P E TF  VL+ C HA +V +G + F+ M   Y + P + HY C+VDLL RAG V
Sbjct: 493 SSTATPNEITFTGVLSACRHAGLVEEGQHFFKLMQHKYHIIPNIRHYGCMVDLLGRAGYV 552

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +EAE  IE         D   WGALL +C  +G  EVG RV RKL  +       H +  
Sbjct: 553 KEAENLIESMP---MSPDVPAWGALLGSCWKHGDNEVGERVGRKLVNLDPHHDGFHTMLS 609

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           NIY   G       +R  + +  + K PG SV+E
Sbjct: 610 NIYASEGMWQHVKDLRGSMKQWHVPKIPGSSVVE 643



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 154/355 (43%), Gaps = 40/355 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +++   +   P L +  Y  M      P+ YT   L  AC     +E  G  VH H V+ 
Sbjct: 77  VLKAAREHGLPHLCLPLYASM---SAAPDCYTHTILAAACATRRAIEE-GRQVHCHAVRH 132

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG + ++ ++L+  YS    +G AR +FD  P  D V+W T++  Y +  D + A  +F
Sbjct: 133 GFGRNLYLANALMSMYSACGCLGDARKVFDAGPVWDAVSWNTILAAYVQAEDVDQAVGVF 192

Query: 121 EKMPERNAV-------------------------------SWSAIMAAYSRISDFKEVLS 149
            +MPER A                                +W+A+++ + R   F E L+
Sbjct: 193 ARMPERGAAAVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALA 252

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LF  M+  G   +E+ +V V+ ACA L     G   H  A R  L   + +  A++ MYS
Sbjct: 253 LFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAGLGSRLNVQNALIHMYS 312

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
              +V +A  +F+     D  +WN+MI+G   NG  K + ELF  M          ++  
Sbjct: 313 SFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFTVM----PDKDNVSWTT 368

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
           +++ C       + L +F NM A  G++P       V+        +E+ +   E
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQA-QGIKPDEVTLVSVISACTNMSSLEQGKSMHE 422


>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 484

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 144/411 (35%), Positives = 221/411 (53%), Gaps = 7/411 (1%)

Query: 28  PNNYTFPPLIKACV--ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
           PN+ T   ++ AC      PL          +    F     + + L  FY        A
Sbjct: 66  PNDVTLLTVLSACAGAPSSPLARPLALSLHALAAKLFPSHLLLCTCLARFYLASRLPHLA 125

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
             LF     R +VT+ TM+ G  + G    ARE+F+ MPE + VSW+A++    +     
Sbjct: 126 LQLFGSMTVRSLVTYNTMITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHD 185

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           E +  F  M   G++P+   LV+ ++ACA +GA+  G+WVH    R  LE N+ +A +++
Sbjct: 186 EAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRERLEGNIRIANSLI 245

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
           DMY++CG V  A  VF+ + N+   +WN+MI G A NG    ++E F+ M + G +P   
Sbjct: 246 DMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRKGFRPDAV 305

Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           TF  VLT C+HA +  +GL  ++ M A +G+  ++EHY CVVDLL RAG + EA   +  
Sbjct: 306 TFTGVLTACSHAGLTDEGLRYYKAMRAEHGITARMEHYGCVVDLLGRAGRLGEAMSVVAT 365

Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-W 384
                   +  V GALL+ CR++G +++  ++ + L E      S +VL  NIY   G W
Sbjct: 366 MP---MRPNEVVLGALLAGCRMHGDVDMAEQLMQHLLEQDPGGDSNYVLLSNIYAATGKW 422

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           D  A KVR L+   G+KK+PG S +E++G V EF+ GD  H QA E++ ++
Sbjct: 423 D-GAGKVRGLMKARGVKKRPGRSAVEIDGDVHEFVCGDRSHPQADEVFDML 472



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           ++ C+  ML  G EP+  T    I AC  +G L   GM+VH  V +     +  + +SL+
Sbjct: 187 AIDCFHAMLLDGVEPDYVTLVAAISACAEVGAL-GLGMWVHRLVTRERLEGNIRIANSLI 245

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           + Y+   ++  AR +FD   +R VV+W +M+ G+   G   +A E FE M  +       
Sbjct: 246 DMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFEAMRRK------- 298

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
                                   G +P+      VLTAC+H G   +GL  +   +  H
Sbjct: 299 ------------------------GFRPDAVTFTGVLTACSHAGLTDEGLRYYKAMRAEH 334

Query: 194 -LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGVAMNGDAKKSLEL 251
            +   +     VVD+  + G +  A+SV   +  + +     A+++G  M+GD   + +L
Sbjct: 335 GITARMEHYGCVVDLLGRAGRLGEAMSVVATMPMRPNEVVLGALLAGCRMHGDVDMAEQL 394

Query: 252 FDRMVK 257
              +++
Sbjct: 395 MQHLLE 400



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 94/243 (38%), Gaps = 24/243 (9%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKM------PERNAVSWSAIMAAYSRISDFKEVLS 149
           DVV+WT  +    + GD          M      P  N V+   +++A +          
Sbjct: 30  DVVSWTAAIARPAREGDLPATAAALSAMLSSPAAPAPNDVTLLTVLSACAGAPSSP---- 85

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE-------KNVILAT 202
           L R +             S L  C  L       ++ S      L+       ++++   
Sbjct: 86  LARPLALSLHALAAKLFPSHLLLCTCLAR----FYLASRLPHLALQLFGSMTVRSLVTYN 141

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
            ++    + G V +A  VF+G+   D  +W A+I G   NG   ++++ F  M+  G +P
Sbjct: 142 TMITGLMRNGLVAAAREVFDGMPEPDKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEP 201

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLF-ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
              T VA ++ C     +  GL ++   +     +E  +     ++D+ AR G VE A +
Sbjct: 202 DYVTLVAAISACAEVGAL--GLGMWVHRLVTRERLEGNIRIANSLIDMYARCGQVEFARQ 259

Query: 322 FIE 324
             +
Sbjct: 260 VFD 262


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/424 (34%), Positives = 229/424 (54%), Gaps = 36/424 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q++ P+LS+  Y  M   G  P+ +T   L+ AC  +  L+  G  VH  +++ 
Sbjct: 465 LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLK-LGKEVHGLIIRN 523

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D FV  SLL  Y  +H                              G+   A  LF
Sbjct: 524 RLERDSFVYISLLSLY--IH-----------------------------CGELSTAHVLF 552

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M ++  VSW+ ++  Y +    +  LSLFRQM   G++P E  ++SV  AC+ L ++ 
Sbjct: 553 DAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLR 612

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H YA +  LE N  +A +V+DMY+K G V  +  VF G+  +   +WNAM+ G  
Sbjct: 613 LGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYG 672

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G AK++++LF+ M ++G  P E TF+ VLT C H+ +V +GL   + M  ++G+ P L
Sbjct: 673 IHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTL 732

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HYACV+D+L RAG ++EA K   E+M    G    +W  LLS+CRI+  +E+G ++  K
Sbjct: 733 KHYACVIDMLVRAGKLDEALKIATEEMSEEPG--VGIWNFLLSSCRIHKNLEMGEKIAAK 790

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L          +VL  N+Y  +G WD E  KVR+ + E  ++K  GCS IE+NG V  F+
Sbjct: 791 LFVSEPEKPENYVLLSNLYAGSGKWD-EVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFV 849

Query: 420 AGDN 423
           AG++
Sbjct: 850 AGES 853



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 123/252 (48%), Gaps = 30/252 (11%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P+N+TFP ++KAC  +  ++  G+ VH  VVK    ED FV ++L+ FY     +  
Sbjct: 179 GLLPDNFTFPCVVKACAGVSEVQ-VGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSD 237

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A  +F   P+R++V+W +M+  +   G  E    L  +M E++                 
Sbjct: 238 ALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKD----------------- 280

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
                      E+   P+ + L +VL  CA    I  G  VH  A +  L+K V++  A+
Sbjct: 281 ----------DEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNAL 330

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG--TQP 262
           +DMYSKCG ++ A  +F+  +NK+  +WN M+ G +  GD  K+ +L  +M+  G   + 
Sbjct: 331 MDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRA 390

Query: 263 TETTFVAVLTTC 274
            E T +  +  C
Sbjct: 391 DEVTILNAVPVC 402



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 133/266 (50%), Gaps = 13/266 (4%)

Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
           V  Y K G    A  +F  +  +   SW+A++  YS+ SD +  L  + QM+  G+ P+ 
Sbjct: 435 VASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDL 494

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
             + S+L+AC+ + ++  G  VH    R  LE++  +  +++ +Y  CG + +A  +F+ 
Sbjct: 495 FTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDA 554

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           + +K   +WN M++G   NG  +++L LF +MV  G QP E + ++V   C+    +R G
Sbjct: 555 MEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG 614

Query: 284 LNLFENMSAVYGVEPQLEH---YAC-VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
                  +  Y ++  LE     AC V+D+ A+ G V E+ K       GL       W 
Sbjct: 615 RE-----AHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVF----NGLKERSVASWN 665

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMG 365
           A++    I+G+ +   +++ ++   G
Sbjct: 666 AMVMGYGIHGRAKEAIKLFEEMQRTG 691



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 3/195 (1%)

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           S D++VV    ++D Y K G   +A+ +F+    +N VSW+ ++  +S   D  +   L 
Sbjct: 319 SLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLL 378

Query: 152 RQMQEVG--MKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNVILATAVVDMY 208
           RQM   G  ++ +E  +++ +  C     +     +H Y+ K+  +  N ++A A V  Y
Sbjct: 379 RQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASY 438

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG +  A  VF  I +K   +WNA+I G + + D + SL+ + +M  SG  P   T  
Sbjct: 439 AKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVC 498

Query: 269 AVLTTCTHAKMVRDG 283
           ++L+ C+  K ++ G
Sbjct: 499 SLLSACSQIKSLKLG 513



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 116/230 (50%), Gaps = 6/230 (2%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM- 154
           D V  T ++  Y   G  +++R +F+ + ++N   W+A++++YSR   +  VL +F +M 
Sbjct: 116 DDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMI 175

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
            E G+ P+      V+ ACA +  +  GL VH    +  L ++V ++ A+V  Y   G V
Sbjct: 176 TESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSV 235

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ----PTETTFVAV 270
             AL VF+ +  ++  +WN+MI   + NG +++   L  +M++   +    P   T   V
Sbjct: 236 SDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATV 295

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           L  C   + +  G  +   ++    ++ ++     ++D+ ++ G + +A+
Sbjct: 296 LPVCARDREIGVGKGV-HGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQ 344



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 179 ITQGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           I  G  +H   ++   L  + +L T V+ MYS CG    + SVF+ +  K+   WNA+IS
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 238 GVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGL 284
             + N      LE+F +M+ +SG  P   TF  V+  C     V+ GL
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGL 204


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 240/447 (53%), Gaps = 43/447 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++RG  Q+  P+ +V  Y +M   G  P+ YTF  ++KAC  L    N G   H  VV+ 
Sbjct: 83  VLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSN-GFAFHGKVVRH 141

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG--------- 111
           GF  + +V ++L+ F++    +G A  LFD S     V W++M  GY K G         
Sbjct: 142 GFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLF 201

Query: 112 ----------------------DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                                 + ++ARELF++  E++ V+W+A+++ Y      KE L 
Sbjct: 202 DEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALG 261

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNVILAT----AV 204
           +F++M++ G  P+   ++S+L+ACA LG +  G  +H Y  +   +  ++ + T    A+
Sbjct: 262 IFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNAL 321

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KCG +  A+ VF G+ ++D   WN +I G+A++  A+ S+E+F+ M +    P E
Sbjct: 322 IDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNE 380

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+ V+  C+H+  V +G   F  M  +Y +EP ++HY C+VD+L RAG +EEA  F+E
Sbjct: 381 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVE 440

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +A VW  LL AC+IYG +E+G     KL  M   +   +VL  NIY   G 
Sbjct: 441 SMK---IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQ 497

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIE 410
           WD    KVRK+  +T +KK  G S+IE
Sbjct: 498 WD-GVQKVRKMFDDTRVKKPTGVSLIE 523



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G  + A +LF+++P+ +    + ++   ++    ++ +SL+ +M++ G+ P+      VL
Sbjct: 60  GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC+ L   + G   H    R+    N  +  A++  ++ CG +  A  +F+  +     
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AW++M SG A  G   +++ LFD M        +  +  ++T C   K +     LF+  
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEM----PYKDQVAWNVMITGCLKCKEMDSARELFDRF 235

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           +     E  +  +  ++      G  +EA    +E        D     +LLSAC + G 
Sbjct: 236 T-----EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGD 290

Query: 351 IEVGNRVWRKLAEMGITDFSTHV 373
           +E G R+   + E      S +V
Sbjct: 291 LETGKRLHIYILETASVSSSIYV 313


>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
            chloroplastic-like [Vitis vinifera]
          Length = 1146

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/439 (34%), Positives = 232/439 (52%), Gaps = 40/439 (9%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            +IR Y   + P+ ++  YL+M  +G  P+  TFP L+KAC  +    N G  +   V+K 
Sbjct: 731  LIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAAISAF-NEGRKIQVDVMKH 789

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            G                                D +V    TM+  YG      +AR +F
Sbjct: 790  GL-------------------------------DCNVYVQNTMIHFYGSCKRIRDARRMF 818

Query: 121  EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++M  R  VSW+A+++A        +   LF +M+  G  P+E+ +V +L+AC+ LG ++
Sbjct: 819  DEMSYRTVVSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLS 878

Query: 181  QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
             G WVHS      +  N  L TA+VDMY+KCG V  A  VF  +  ++   W+AMI G+A
Sbjct: 879  FGRWVHSQVIEKGMVVNCRLGTALVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLA 938

Query: 241  MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             +G AK++LELF +M +S   P   TF+ VL  C+HA +V DG   F +M  V+G+EP +
Sbjct: 939  QHGFAKEALELFPKMKQSSISPNYVTFLGVLCACSHAGLVDDGYRFFHDMEYVHGIEPMM 998

Query: 301  EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE---VGNRV 357
             HY  +VD+L+RAG ++EA  FI   +      D  VW  LLSAC I+G  +   VG++V
Sbjct: 999  IHYGAMVDILSRAGRLKEAYNFI---LNMPVEADPVVWRTLLSACTIHGINDNDGVGDKV 1055

Query: 358  WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             ++L E+        V+  N+Y E G WD  AN VR+ + +TG+KK  G S IEV G + 
Sbjct: 1056 RKRLLELEPRRSGNFVMVANMYAEVGKWDKAAN-VRRTMKDTGLKKMAGESCIEVGGSIH 1114

Query: 417  EFLAGDNRHAQAGEIYRVI 435
             F +GD+      ++ +++
Sbjct: 1115 RFFSGDDPQLDCEDVLQLL 1133



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 83/167 (49%)

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
           +G+  +AR L     +    SW+ ++ +Y+     +E +  + +M+ +G+ P++     +
Sbjct: 707 LGNLNHARVLLSGSEKSEVSSWNDLIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPIL 766

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L ACA + A  +G  +     ++ L+ NV +   ++  Y  C  +  A  +F+ +S +  
Sbjct: 767 LKACAAISAFNEGRKIQVDVMKHGLDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTV 826

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
            +WNA++S    N     S  LF +M  SG  P ETT V +L+ C+ 
Sbjct: 827 VSWNAVLSACVDNEWLNDSFGLFVKMRGSGFDPDETTMVILLSACSE 873


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 237/441 (53%), Gaps = 37/441 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G ++    + +V  +  +L+ G  P+ +    +++AC  LG LE+ G ++   + + 
Sbjct: 176 MICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLES-GRWIDRCMREC 234

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   + FV +SL                               VD Y K G  E AR +F
Sbjct: 235 GLSRNVFVATSL-------------------------------VDMYTKCGSMEEARFVF 263

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E++ V WSA++  Y+     +E + LF +M++V ++P+   +V  L++CA LGA+ 
Sbjct: 264 DGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALE 323

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W            N +L T+++D Y+KCG +  AL V++ +  KD   +NA+ISG+A
Sbjct: 324 LGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLA 383

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M G    +  +F +M K G  P E TFV +L  CTHA +V DG + F +MS  + V P +
Sbjct: 384 MYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTI 443

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLLARAG ++EA   I+   G     +  VWG+LL  CR++ + ++   V ++
Sbjct: 444 EHYGCMVDLLARAGFLDEAHNLIK---GMPMKANVIVWGSLLGGCRLHRETQLAEHVLKQ 500

Query: 361 LAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   +   +VL  NIY  +  WD EA K+R  ++E GM+K PG S +EV+GVV EFL
Sbjct: 501 LIELEPWNSGHYVLLSNIYSASRRWD-EAEKIRSTVNEKGMQKLPGYSWVEVDGVVHEFL 559

Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
            GD  H  + +IY  + S  K
Sbjct: 560 VGDTSHPLSQKIYEKLESLFK 580



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 182/375 (48%), Gaps = 55/375 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRG +  +    +V  Y  M      P+++TF  ++KAC  L  L + G+ +H+ V K 
Sbjct: 75  MIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN-LFHLGVMIHSLVFKT 133

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D FV ++++ FYS                               K G   +A ++F
Sbjct: 134 GFDCDVFVKTNVVCFYS-------------------------------KCGFLRDAWKVF 162

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M  +N VSW+ ++        F+E + LFR + E G++P+   +V VL ACA LG + 
Sbjct: 163 DDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLE 222

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G W+    +   L +NV +AT++VDMY+KCG +  A  VF+G+  KD   W+AMI G A
Sbjct: 223 SGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYA 282

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG------LNLFENMSAVY 294
            NG  ++++ELF  M K   +P     V  L++C     +  G      +N  E +S   
Sbjct: 283 SNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLS--- 339

Query: 295 GVEPQLEHYACVVDLLARAGMVEEA---EKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
              P L     ++D  A+ G +EEA    K ++EK       D  V+ A++S   +YG++
Sbjct: 340 --NPVLG--TSLIDFYAKCGSMEEALGVYKMMKEK-------DRVVFNAVISGLAMYGQV 388

Query: 352 EVGNRVWRKLAEMGI 366
                V+ ++ + GI
Sbjct: 389 GAAFGVFGQMGKFGI 403


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 238/442 (53%), Gaps = 38/442 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q++ P+LS+  +L M + G  P+N+T   L+ AC  L  L   G  VH  +++ 
Sbjct: 451 LIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLR-LGKEVHGFIIRN 509

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D FV  S+L  Y    ++ T + LFD   D  +V+W T++ G+ + G         
Sbjct: 510 WLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNG--------- 560

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
              PER                     L LFRQM   G++P    +++V  AC+ L ++ 
Sbjct: 561 --FPER--------------------ALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLR 598

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H+YA ++ LE N  +A +++DMY+K G +  +  VF G+  K A +WNAMI G  
Sbjct: 599 LGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYG 658

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G AK++++LF+ M ++G  P + TF+ VLT C H+ ++ +GL   + M + +G++P L
Sbjct: 659 MHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNL 718

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HYACV+D+L RAG ++ A +   E        D  +W +LLS CRI+  +E+G +V  K
Sbjct: 719 KHYACVIDMLGRAGQLDNALRVAAEMS---EEPDVGIWNSLLSWCRIHQNLEMGEKVAAK 775

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L  +       +VL  N+Y   G WD +  +VR+ + E  ++K  GCS IE+NG V  F+
Sbjct: 776 LFVLEPEKPENYVLLSNLYAGLGKWD-DVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFV 834

Query: 420 AGDNRHAQAGEIYRVIHSFLKM 441
            G+ R     E  + + S L+M
Sbjct: 835 VGE-RFLDGFEEIKSLWSILEM 855



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 120/245 (48%), Gaps = 45/245 (18%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           P+N+TFP +IKAC  +  +   G+ VH  VVK G  ED FV ++L+ FY           
Sbjct: 185 PDNFTFPCVIKACAGISDV-GIGLAVHGLVVKTGLVEDLFVGNALVSFY----------- 232

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
                               G  G   +A +LF+ MPERN VSW++++  +S   D    
Sbjct: 233 --------------------GTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD---- 268

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
                   +    P+ + +V+VL  CA    I  G  VH +A +  L+K +++  A++DM
Sbjct: 269 --------DGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDM 320

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           YSK G +  +  +F+  +NK+  +WN M+ G +  GD   + +L  +M+ +G++  +   
Sbjct: 321 YSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQML-AGSEDVKADE 379

Query: 268 VAVLT 272
           V +L 
Sbjct: 380 VTILN 384



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 134/274 (48%), Gaps = 13/274 (4%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D +     V  Y K G    A+ +F  +  +   SW+A++  Y++ SD +  L    QM+
Sbjct: 413 DELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMK 472

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
             G+ P+   + S+L+AC+ L ++  G  VH +  R  LE+++ +  +V+ +Y  CG + 
Sbjct: 473 NSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELC 532

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           +   +F+ + +    +WN +I+G   NG  +++L LF +MV  G QP   + + V   C+
Sbjct: 533 TVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACS 592

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEH---YAC-VVDLLARAGMVEEAEKFIEEKMGGLG 331
               +R G       +  Y ++  LE     AC ++D+ A+ G + ++ K       GL 
Sbjct: 593 LLPSLRLG-----REAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVF----NGLK 643

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
              A  W A++    ++G+ +   +++ ++   G
Sbjct: 644 EKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTG 677



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 13/186 (6%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM- 154
           D V  T ++  Y   G  +++R  F+ +  +N   W+A++++YSR   + EVL +F +M 
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMI 178

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
            +  + P+      V+ ACA +  +  GL VH    +  L +++ +  A+V  Y   G V
Sbjct: 179 SKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFV 238

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             AL +F+ +  ++  +WN+MI   + NGD                 P   T V VL  C
Sbjct: 239 SDALKLFDIMPERNLVSWNSMIRVFSDNGD------------DGAFMPDVATVVTVLPVC 286

Query: 275 THAKMV 280
              + +
Sbjct: 287 AREREI 292



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 18/175 (10%)

Query: 127 NAVSWSAIMAAY--SRISDFKEVLSL---FRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           NA+S ++  A +   RIS+F E   L   FR +QE       S  V +L   A LG + Q
Sbjct: 34  NAISSNSTNANHFLRRISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREA-LGLLLQ 92

Query: 182 ----------GLWVHSYAK-RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
                     G  +H        L  + +L T ++ MY+ CG    + S F+ + +K+  
Sbjct: 93  ASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLF 152

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGL 284
            WNA+IS  + N    + LE+F +M+ K+   P   TF  V+  C     V  GL
Sbjct: 153 QWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGL 207


>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
 gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
          Length = 451

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/460 (33%), Positives = 245/460 (53%), Gaps = 47/460 (10%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG-EDPFVVSSLLEFYSLV 79
           ML  G  PN +T   +IK C  +  +   G+ VHA + K G G     V ++LL+ Y  +
Sbjct: 1   MLWSGPRPNAFTVTSVIKCCSKVRAVHE-GLQVHAFLAKAGLGCSSVHVGAALLDLYGNI 59

Query: 80  HKMGTARALFDKSP-------------------------------DRDVVTWTTMVDGYG 108
             +G AR +FD+ P                               +RD ++W T++ GY 
Sbjct: 60  GLVGDARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAERDPISWNTLMSGYL 119

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
            +GD    RELF++M  RN  SW+ ++AA S      + + +F +M+  G +P+ + +  
Sbjct: 120 HLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDAATMAV 179

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +++ACA LG++T    VH   ++  +E N  +  +++DMY+KCG +  A  +F     KD
Sbjct: 180 LMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKD 239

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             ++N MI   A +G A+ +L+LF+ MV SG QP   TF+ VL+ C HA +V  G N FE
Sbjct: 240 TVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFE 299

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M   Y V+   +HYACVVDL  RAG++EEA  F++        G   VWGALL+ACR +
Sbjct: 300 LMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVKPHAG---VWGALLNACRKH 356

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYN-IYKEAGW----DMEANKVRKLISETGMKKK 403
             ++VG    ++L  +   +   +VL  N + +   W    D++ +  RK+I +T     
Sbjct: 357 CHVDVGEIAAKELIRIEPKNPGNYVLLRNTLARGQQWDAVEDVQLSMRRKVIDKTA---- 412

Query: 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI-HSFLKMS 442
            GCS +EV+ VV EFLAGD  H +  EIY ++ H +++++
Sbjct: 413 -GCSWVEVDSVVHEFLAGDFYHPKFDEIYTILEHLYMELT 451


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 151/447 (33%), Positives = 240/447 (53%), Gaps = 43/447 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++RG  Q+  P+ +V  Y +M   G  P+ YTF  ++KAC  L    N G   H  VV+ 
Sbjct: 49  VLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSN-GFAFHGKVVRH 107

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG--------- 111
           GF  + +V ++L+ F++    +G A  LFD S     V W++M  GY K G         
Sbjct: 108 GFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLF 167

Query: 112 ----------------------DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                                 + ++ARELF++  E++ V+W+A+++ Y      KE L 
Sbjct: 168 DEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALG 227

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNVILAT----AV 204
           +F++M++ G  P+   ++S+L+ACA LG +  G  +H Y  +   +  ++ + T    A+
Sbjct: 228 IFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNAL 287

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KCG +  A+ VF G+ ++D   WN +I G+A++  A+ S+E+F+ M +    P E
Sbjct: 288 IDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNE 346

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TF+ V+  C+H+  V +G   F  M  +Y +EP ++HY C+VD+L RAG +EEA  F+E
Sbjct: 347 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVE 406

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
                    +A VW  LL AC+IYG +E+G     KL  M   +   +VL  NIY   G 
Sbjct: 407 SMK---IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQ 463

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIE 410
           WD    KVRK+  +T +KK  G S+IE
Sbjct: 464 WD-GVQKVRKMFDDTRVKKPTGVSLIE 489



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 9/263 (3%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G  + A +LF+++P+ +    + ++   ++    ++ +SL+ +M++ G+ P+      VL
Sbjct: 26  GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 85

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC+ L   + G   H    R+    N  +  A++  ++ CG +  A  +F+  +     
Sbjct: 86  KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 145

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           AW++M SG A  G   +++ LFD M        +  +  ++T C   K +     LF+  
Sbjct: 146 AWSSMTSGYAKRGKIDEAMRLFDEM----PYKDQVAWNVMITGCLKCKEMDSARELFDRF 201

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           +     E  +  +  ++      G  +EA    +E        D     +LLSAC + G 
Sbjct: 202 T-----EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGD 256

Query: 351 IEVGNRVWRKLAEMGITDFSTHV 373
           +E G R+   + E      S +V
Sbjct: 257 LETGKRLHIYILETASVSSSIYV 279


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 243/442 (54%), Gaps = 11/442 (2%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            +I  Y Q      ++  ++ M+  GF P+  T   ++ AC  L   +  G  VHA VVK 
Sbjct: 964  LITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAA-DREGRQVHARVVKS 1022

Query: 61   G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
              F ED  + ++L++ Y+   +   AR +FD+   R VV+ T+++ GY +  + E+A+ +
Sbjct: 1023 DRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMV 1082

Query: 120  FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
            F +M E+N ++W+ ++AAY++  + +E L LF +++   + P      +VL AC ++  +
Sbjct: 1083 FSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADL 1142

Query: 180  TQGLWVHSYAKR------YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
              G   H +  +      +  E +V +  ++VDMY K G +     VFE ++ +D  +WN
Sbjct: 1143 QLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWN 1202

Query: 234  AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
            AMI G A NG AK +L LF+RM+ S   P   T + VL+ C H+ +V +G   F +M+  
Sbjct: 1203 AMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTED 1262

Query: 294  YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
            +G+ P  +HY C++DLL RAG ++E E+ I+E        DA +W +LL +CR++  +E+
Sbjct: 1263 HGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMS---MEPDAVLWASLLGSCRLHKNVEM 1319

Query: 354  GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
            G     KL E+   +   +VL  N+Y E G   +  +VR  +   G+ K+PGCS IE+  
Sbjct: 1320 GEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGR 1379

Query: 414  VVEEFLAGDNRHAQAGEIYRVI 435
             V  FLA DN H    EI+ ++
Sbjct: 1380 KVSVFLARDNGHPCKNEIHAIL 1401



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 109/369 (29%), Positives = 192/369 (52%), Gaps = 11/369 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R Y  A    ++V  +  ML  G  P  YT    + AC     LE  G  +HA V++ 
Sbjct: 223 IVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEE-GRCIHAFVLRH 281

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+     V SS+++ Y+    M  A++LF+ +P +D+V  T++V G    G   +A+ +F
Sbjct: 282 GYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVF 341

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M ERN VSW+A++  Y R  D    L LF+QM++   + +   L SVL+AC  +  I 
Sbjct: 342 EGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIG 401

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA--LSVFEGISNKDAGAWNAMISG 238
           +G  VH++A +     + IL  A+V MYSKCG + SA  L +FE  S +D+ +WN++ISG
Sbjct: 402 KGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISG 461

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM-SAVYGVE 297
              +  ++ +L    +M +S   P ++TF + L  C +  +++ G+ +   M    Y ++
Sbjct: 462 YERHSMSEAALYALTKM-QSEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEID 520

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             L   + ++D+  +    + + +  E +       D  +W +++  C   GK E G  +
Sbjct: 521 DILR--SVLIDMYCKCRQFDYSIRIFEAR----PSRDVILWNSMIFGCAYSGKGEYGLDL 574

Query: 358 WRKLAEMGI 366
           + ++ + GI
Sbjct: 575 FDEMQKQGI 583



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 167/357 (46%), Gaps = 37/357 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVK 59
           M+ GY+++     ++  +  M     E +  T   ++ AC   G L+   G  VHA  +K
Sbjct: 355 MLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACT--GILDIGKGEEVHAFAIK 412

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            GF   P + ++L+  YS    + +A  L                              L
Sbjct: 413 CGFFSSPILKNALVRMYSKCGCLRSAERLL-----------------------------L 443

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE   ER++ SW+++++ Y R S  +  L    +MQ   + PN+S   S L ACA++  +
Sbjct: 444 FEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSALAACANIFLL 502

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG+ +H+Y  R   E + IL + ++DMY KC     ++ +FE   ++D   WN+MI G 
Sbjct: 503 KQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGC 562

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A +G  +  L+LFD M K G +    TF+  L +C     VR G + F  M     + P+
Sbjct: 563 AYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLMMD-ESIIPR 621

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +EHY C+++LL + G + E E F+E            +W  +   CR YG  ++G R
Sbjct: 622 IEHYECMIELLGKHGCMVELEDFVEHMP---FEPTTAMWLRIFDCCREYGNRKLGER 675



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 137/277 (49%), Gaps = 16/277 (5%)

Query: 58   VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
            +K  F  + F++++L+  Y+ + ++  AR +FD+ P  +  ++  ++  + ++G   +AR
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 118  ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
             LF  +P+ +  S++A++AA ++ S   + L     M       N     S L+ACA   
Sbjct: 847  ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906

Query: 178  AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
                G+ VH+   +    K+V + +A++DMY+KC     A  VFE +  ++  +WN++I+
Sbjct: 907  DSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLIT 966

Query: 238  GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMV-----R 281
                NG   ++L LF  M+K+G  P E T  +V++ C            HA++V     R
Sbjct: 967  CYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026

Query: 282  DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
            + + L   +  +Y    +     CV D +A   +V E
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSE 1063



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 7/274 (2%)

Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
           ++     G   +ARELF+ MP R+  SW+AI+ A SR     E LSLF  M  +G++P +
Sbjct: 92  IESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKD 151

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           + + SVL+ CA    +     +H +  +   + NVIL TA+VD+Y  C  +  A   F+ 
Sbjct: 152 ATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDD 211

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           I   +A +WN ++    + G    ++++F RM+ +G +P   T    +  C     + +G
Sbjct: 212 ILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEG 271

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE-EKMGGLGGGDANVWGALL 342
                     +G E  +   + VVD+ A+ G ++ A+       M  +    + V G  L
Sbjct: 272 -RCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG--L 328

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           ++C   G+I    RV+  + E  +  ++  +  Y
Sbjct: 329 ASC---GRIADAKRVFEGMKERNLVSWNAMLTGY 359



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 177/450 (39%), Gaps = 113/450 (25%)

Query: 26   FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
            F  N Y+F   + AC         G+ VHA V K    +D ++ S+LL+ Y+       A
Sbjct: 888  FVLNAYSFASALSACAAEKD-SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEA 946

Query: 86   RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
            R +F+  P+R++V+W +++  Y + G                                  
Sbjct: 947  RRVFEAMPERNIVSWNSLITCYEQNG-------------------------------PVG 975

Query: 146  EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS-YAKRYHLEKNVILATAV 204
            E L LF  M + G  P+E  L SV++ACA L A  +G  VH+   K     ++++L+ A+
Sbjct: 976  EALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNAL 1035

Query: 205  VDMYSKCGHVHSALSVFEGISN-------------------------------KDAGAWN 233
            VDMY+KCG   +A  VF+ +++                               K+  AWN
Sbjct: 1036 VDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWN 1095

Query: 234  AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN-----LFE 288
             +I+  A NG+ +++L LF R+ +    PT  T+  VL  C +   ++ G       L E
Sbjct: 1096 VLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKE 1155

Query: 289  NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL------- 341
                 +G E  +     +VD+  + G +++  K  E     +   D   W A+       
Sbjct: 1156 GFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFER----MAARDNVSWNAMIVGHAQN 1211

Query: 342  ----------------------------LSACRIYGKIEVGNRVWRKLAE-MGITDFSTH 372
                                        LSAC   G +E G R +R + E  GI     H
Sbjct: 1212 GRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDH 1271

Query: 373  -VLSYNIYKEAGWDMEANKVRKLISETGMK 401
                 ++   AG      +V +LI E  M+
Sbjct: 1272 YTCMIDLLGRAG---HLKEVEELIKEMSME 1298



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 148/335 (44%), Gaps = 42/335 (12%)

Query: 45  PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRD----VVTW 100
           P E   +F  +++   G       ++S+L   +    +  AR L      RD    V+  
Sbjct: 132 PSEALSLF--SNMNSLGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILG 189

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +VD YG      +AR  F+ + E NA+SW+ I+  Y         + +F +M   G++
Sbjct: 190 TALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVR 249

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS- 219
           P    +   + AC    A+ +G  +H++  R+  E +V + ++VVDMY+KCG + +A S 
Sbjct: 250 PLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSL 309

Query: 220 ------------------------------VFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
                                         VFEG+  ++  +WNAM++G   + D   +L
Sbjct: 310 FNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGAL 369

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE-NMSAVYGVEPQLEHYACVVD 308
            LF +M +   +    T  +VL+ CT    +  G  +    +   +   P L++   +V 
Sbjct: 370 LLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKN--ALVR 427

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
           + ++ G +  AE+ +  +MG     D+  W +L+S
Sbjct: 428 MYSKCGCLRSAERLLLFEMG--SERDSYSWNSLIS 460


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 131/369 (35%), Positives = 211/369 (57%), Gaps = 4/369 (1%)

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y+   +M   R LF++ P  ++ +W  M+ GY + GD   AR LF+ MP+R++VSW+AI+
Sbjct: 291 YAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAII 350

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           A Y++   ++E +++  +M+  G   N S     L+ACA + A+  G  VH    R   E
Sbjct: 351 AGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYE 410

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           K  ++  A+V MY KCG +  A  VF+G+ +KD  +WN M++G A +G  +++L +F+ M
Sbjct: 411 KGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESM 470

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           + +G +P E T V VL+ C+H  +   G   F +M+  YG+ P  +HYAC++DLL RAG 
Sbjct: 471 ITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGC 530

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           +EEA+  I          DA  WGALL A RI+G +E+G +    + +M   +   +VL 
Sbjct: 531 LEEAQNLIRNM---PFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLL 587

Query: 376 YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            N+Y  +G  ++ +K+R  + + G++K PG S +EV   +  F  GD  H + G IY  +
Sbjct: 588 SNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFL 647

Query: 436 HSF-LKMSN 443
               LKM +
Sbjct: 648 EELDLKMKH 656



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 144/329 (43%), Gaps = 40/329 (12%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
           +D F  + +L  Y+   ++  AR LFD  P++DVV+W  M+ GY + G  + AR++F++M
Sbjct: 93  KDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRM 152

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           P +N++SW+ ++AAY R    +E   LF          ++S    +   C   G + + +
Sbjct: 153 PHKNSISWNGLLAAYVRSGRLEEARRLFE---------SKSDWELISCNCLMGGYVKRNM 203

Query: 184 WVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
              +      +  +++I    ++  Y++ G +  A  +FE    +D   W AM+     +
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQD 263

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS----------- 291
           G   ++  +FD M     Q  E ++  ++      K +  G  LFE M            
Sbjct: 264 GMLDEARRVFDEM----PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMI 319

Query: 292 -------------AVYGVEPQLE--HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
                         ++ + PQ +   +A ++   A+ G+ EEA   + E        + +
Sbjct: 320 SGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRS 379

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            +   LSAC     +E+G +V  ++   G
Sbjct: 380 TFCCALSACADIAALELGKQVHGQVVRTG 408



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 107/246 (43%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q    + ++   ++M   G   N  TF   + AC  +  LE  G  VH  VV+ 
Sbjct: 349 IIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALE-LGKQVHGQVVRT 407

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+ +   V ++L+  Y     +  A  +F     +D+V+W TM+ GY + G         
Sbjct: 408 GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHG--------- 458

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                            + R     + L++F  M   G+KP+E  +V VL+AC+H G   
Sbjct: 459 -----------------FGR-----QALTVFESMITAGVKPDEITMVGVLSACSHTGLTD 496

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  + HS  K Y +  N      ++D+  + G +  A ++   +    DA  W A++  
Sbjct: 497 RGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGA 556

Query: 239 VAMNGD 244
             ++G+
Sbjct: 557 SRIHGN 562



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 123/299 (41%), Gaps = 43/299 (14%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D   V  T  +  + + G  + A  +F+ MP RN+VS++A+++ Y R + F     LF +
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDK 89

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL-----------EKNVILAT 202
           M                    H    +  L +  YA+   L           EK+V+   
Sbjct: 90  M-------------------PHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWN 130

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++  Y + GHV  A  VF+ + +K++ +WN +++    +G  +++  LF+    S +  
Sbjct: 131 AMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFE----SKSDW 186

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
              +   ++       M+ D   LF+ +         L  +  ++   A+ G + +A + 
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQIPV-----RDLISWNTMISGYAQDGDLSQARRL 241

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            EE        D   W A++ A    G ++   RV+ ++ +     ++  +  Y  YK 
Sbjct: 242 FEES----PVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVMIAGYAQYKR 296



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/219 (23%), Positives = 98/219 (44%), Gaps = 20/219 (9%)

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
           +Y K +  + + +  T  +  + + GH   AL VF+ +  +++ ++NAMISG   N    
Sbjct: 22  NYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFS 81

Query: 247 KSLELFDRMVKSGTQPTETTFV--AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
            + +LFD+M      P +  F    +LT     + +RD   LF++M      E  +  + 
Sbjct: 82  LARDLFDKM------PHKDLFSWNLMLTGYARNRRLRDARMLFDSMP-----EKDVVSWN 130

Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
            ++    R+G V+EA    +     +   ++  W  LL+A    G++E   R++   ++ 
Sbjct: 131 AMLSGYVRSGHVDEARDVFDR----MPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDW 186

Query: 365 GITDFSTHVLSY---NIYKEAGWDMEANKVRKLISETGM 400
            +   +  +  Y   N+  +A    +   VR LIS   M
Sbjct: 187 ELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTM 225


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 237/438 (54%), Gaps = 43/438 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R + Q   P          L M   P+N+TFP L+K C     L   G  +HA + K 
Sbjct: 66  LLRAFSQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCS-RSKLPPLGKQLHALLTKL 124

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D ++ + LL  YS                               + GD   AR LF
Sbjct: 125 GFAPDLYIQNVLLHMYS-------------------------------EFGDLLLARSLF 153

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP R+ VSW++++          E ++LF +M + G++ NE+ ++SVL ACA  GA++
Sbjct: 154 DRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALS 213

Query: 181 QGLWVHSYAKRY----HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            G  VH+  + +    H + NV  +TA+VDMY+K G + SA  VF+ + ++D   W AMI
Sbjct: 214 MGRKVHANLEEWGIEIHSKSNV--STALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMI 271

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           SG+A +G  K ++++F  M  SG +P E T  AVLT C +A ++R+G  LF ++   YG+
Sbjct: 272 SGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGM 331

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P ++H+ C+VDLLARAG ++EAE F+          D  +W  L+ AC+++G  +   R
Sbjct: 332 KPSIQHFGCLVDLLARAGRLKEAEDFVN---AMPIEPDTVLWRTLIWACKVHGDADRAER 388

Query: 357 VWRKL--AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
           + + L   +M   D  +++L+ N+Y   G      +VR+L+++ G+ K PG S IEV+G 
Sbjct: 389 LMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGG 448

Query: 415 VEEFLAGDNRHAQAGEIY 432
           V EF+ GD  H +A EI+
Sbjct: 449 VHEFVMGDYNHPEAEEIF 466



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 113/244 (46%), Gaps = 13/244 (5%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRI---SDFKEVLSLFRQMQEVGMKPNESGLV 167
           GD   AR L    P  N+  ++ ++ A+S+    +     LSLF  M      P+     
Sbjct: 43  GDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSMPS---PPDNFTFP 99

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
            +L  C+       G  +H+   +     ++ +   ++ MYS+ G +  A S+F+ + ++
Sbjct: 100 FLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHR 159

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           D  +W +MI G+  +    +++ LF+RM++ G +  E T ++VL  C  +  +  G  + 
Sbjct: 160 DVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACADSGALSMGRKVH 219

Query: 288 ENMSAVYGVEPQLEH--YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
            N+   +G+E   +      +VD+ A+ G +  A K  ++ +      D  VW A++S  
Sbjct: 220 ANLEE-WGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVV----HRDVFVWTAMISGL 274

Query: 346 RIYG 349
             +G
Sbjct: 275 ASHG 278


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/431 (32%), Positives = 239/431 (55%), Gaps = 39/431 (9%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV 69
           FP  S+F +  M   G   +N+TFP ++KAC  L       + +H+ +VK+G   D FV 
Sbjct: 67  FPSHSLFYFFSMRSNGIPLDNFTFPFVLKACSRL----QINLHLHSLIVKYGLDSDIFVQ 122

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++L+  Y                               G  G  E A ++F++M ER++V
Sbjct: 123 NALICVY-------------------------------GYCGSLEMAVKVFDEMSERDSV 151

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           SWS ++A++       E L LF +MQ E  + P+E  ++SV++A +HLG +  G WV ++
Sbjct: 152 SWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAF 211

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             R  L  +V L TA++DM+S+CG +  ++ VFE ++ ++   W A+I+G+ ++G + ++
Sbjct: 212 IGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEA 271

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           L +F  M KSG QP   TF  VL  C+H  +V++G ++FE++  VY ++P L+HY C+VD
Sbjct: 272 LAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVD 331

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +L RAG++ EA  F+E         ++ +W  LL AC  +  + +  +V  K++++  + 
Sbjct: 332 ILGRAGLLNEAYDFVERMP---MKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQ 388

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
               VL  N+Y  AG  +E   +R  + E  + K+PGCS I V+  + EF++GDN H Q+
Sbjct: 389 NGDLVLLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQS 448

Query: 429 GEIYRVIHSFL 439
            +I + + S +
Sbjct: 449 EDITKFLSSII 459


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/449 (33%), Positives = 246/449 (54%), Gaps = 9/449 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+     + ++     M  +G + ++ T+  +I AC  +G  +  G  +HA+++K 
Sbjct: 260 MISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQ-MGKQMHAYILKN 318

Query: 61  GFGED-PFVVS---SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
               +  F +S   +L+  Y   +K+  AR +F   P R+++TW  ++ GY   G  E A
Sbjct: 319 ELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEA 378

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           +  FE+MP +N ++ + +++  ++     E L LF+QM+  G +P +      LTAC+ L
Sbjct: 379 KSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL 438

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           GA+  G  +H+       E ++ +  A++ MY+KCG V +A SVF  + + D  +WN+MI
Sbjct: 439 GALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMI 498

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           + +  +G   K++ELFD+M+K G  P   TF+ VLT C+HA +V  G + F +M   YG+
Sbjct: 499 AALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGI 558

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P  +HYA +VDL  RAGM   A   I+      G   A VW ALL+ CRI+G +++G  
Sbjct: 559 TPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPG---APVWEALLAGCRIHGNMDLGIE 615

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              +L ++   +  T+VL  NIY + G   +  KVRKL+ +  ++K+P CS IEV   V 
Sbjct: 616 AAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVH 675

Query: 417 EFLAGDNRHAQAGEIYRVIHSF-LKMSNL 444
            F+  D+ H +   +YR +    L+M  L
Sbjct: 676 VFMVDDDVHPEVLSVYRYLEQLGLEMKKL 704



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 171/364 (46%), Gaps = 45/364 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY        ++  +  M    F P+++TF  ++ A V+    E     +H  VVK 
Sbjct: 118 MITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKT 177

Query: 61  GFG-EDPFVVSSLLEFYSL--------VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           G G     V+++LL  Y             M +AR LFD+ P RD +TWTTM+ GY +  
Sbjct: 178 GMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRND 237

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D   ARE+FE M E    +W+A+++ Y     F+E L+L R+M+ +G++ ++    ++++
Sbjct: 238 DLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIIS 297

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKN----VILATAVVDMYSKCGHVHSALSVFEGISNK 227
           ACA++G+   G  +H+Y  +  L  N    + ++ A++ +Y K   V  A  +F  +  +
Sbjct: 298 ACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357

Query: 228 DAGAWNA-------------------------------MISGVAMNGDAKKSLELFDRMV 256
           +   WNA                               MISG+A NG   + L+LF +M 
Sbjct: 358 NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMR 417

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
             G +P +  F   LT C+    + +G  L   +  + G E  L     ++ + A+ G+V
Sbjct: 418 LDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHL-GYESSLSVGNAMISMYAKCGVV 476

Query: 317 EEAE 320
           E AE
Sbjct: 477 EAAE 480



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 176/437 (40%), Gaps = 83/437 (18%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHAH++  GF      ++ LLE Y     +  AR LF++ P+ D +  TT++  Y  +G+
Sbjct: 35  VHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAYCALGN 94

Query: 113 FENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
            E  RE+F   P   R++V ++A++  Y+   D    L LFR M+    +P++    SVL
Sbjct: 95  LELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVL 154

Query: 171 TA----------CA--HLGAITQGLWVHS----------YAKRYH--------------- 193
           +A          C   H   +  G+   S          Y KR                 
Sbjct: 155 SALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMVSARKL 214

Query: 194 ----LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
                +++ +  T ++  Y +   ++ A  VFE +      AWNAMISG    G  +++L
Sbjct: 215 FDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEAL 274

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEP 298
            L  +M   G Q  + T+  +++ C            HA ++++ LN   N S    V  
Sbjct: 275 TLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELN--PNHSFCLSVSN 332

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            L      + L  +   V+EA K        +   +   W A+LS     G++E     +
Sbjct: 333 AL------ITLYCKNNKVDEARKIFY----AMPVRNIITWNAILSGYVNAGRMEEAKSFF 382

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK--------KPGCSVIE 410
               EM + +  T  +  +   + G+  E  K+ K +   G +            CSV+ 
Sbjct: 383 E---EMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVL- 438

Query: 411 VNGVVEEFLAGDNRHAQ 427
             G +E    G   HAQ
Sbjct: 439 --GALEN---GRQLHAQ 450


>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
 gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
          Length = 500

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 252/470 (53%), Gaps = 73/470 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLEN--FGMFVHAHVVKFGFGEDPFVVSSLLEF 75
           Y+++ ++GF  +N+TFP L+KA    G   +   G+ +H   +K GF    FV ++LL  
Sbjct: 38  YVNVQEIGFHADNFTFPILLKAA---GSWSSPCIGLALHGQTIKAGFSSHVFVQTALLNM 94

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVD------------------------------ 105
           Y     +  A  +F+K P +DVV W +++D                              
Sbjct: 95  YRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQMDDALKVFNSMPLKDLSSFNIMI 154

Query: 106 -GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD--------------------- 143
            GY  +G   +AR +F+ M E++ VSW+++++AY +  D                     
Sbjct: 155 SGYSSIGKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNIITWNT 214

Query: 144 ----------FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
                     + EVL LF +M+     P+   +  VL+ACAH G++ +G  VH YA    
Sbjct: 215 MVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIYAIDNG 274

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           L  +  + TA++DMY+KCG +   L VF     KD   WNA+ISG+A++G    +L +F+
Sbjct: 275 LASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAALNIFN 334

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           +M K+ T+P + TF+ +L+ C+H+ +V++G  LF +M   +G+ P++EHY C+VDLL+RA
Sbjct: 335 KMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVDLLSRA 394

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG--ITDFST 371
             ++ A + I  K      G+A + GALLSAC ++  +EVG RV + ++  G  ++D   
Sbjct: 395 RHLDCALQLI--KTMPFKPGEA-ILGALLSACIVHQDLEVGERVVKLVSSRGNYLSDGEL 451

Query: 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
            + S N+Y   G   EANK R+++++TG+ K  G SV+EVNG   +FLAG
Sbjct: 452 MMFS-NLYASCGQWEEANKWREMMNDTGIVKTAGFSVVEVNGKFHKFLAG 500



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 58/133 (43%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           +P      W+ I+  +    D  + +  +  +QE+G   +      +L A     +   G
Sbjct: 10  LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIG 69

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
           L +H    +     +V + TA+++MY     V  A  VFE +  KD  AWN+++   A  
Sbjct: 70  LALHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYAST 129

Query: 243 GDAKKSLELFDRM 255
                +L++F+ M
Sbjct: 130 DQMDDALKVFNSM 142


>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
 gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
            Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
            multiple PPR PF|01535 repeats. ESTs gb|AV565358,
            gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
            thaliana]
 gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 249/464 (53%), Gaps = 40/464 (8%)

Query: 1    MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
            + +G++  + P  S+  Y+ ML     P++YT+  L+KA         FG  + AH+ KF
Sbjct: 842  LFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS---RFGESLQAHIWKF 898

Query: 61   GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---------------- 104
            GFG    + ++L++FYS   ++  AR +FD+ P+RD + WTTMV                
Sbjct: 899  GFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLA 958

Query: 105  ---------------DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                           +GY  +G+ E A  LF +MP ++ +SW+ ++  YS+   ++E ++
Sbjct: 959  NQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIA 1018

Query: 150  LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
            +F +M E G+ P+E  + +V++ACAHLG +  G  VH Y  +     +V + +A+VDMYS
Sbjct: 1019 VFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYS 1078

Query: 210  KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
            KCG +  AL VF  +  K+   WN++I G+A +G A+++L++F +M     +P   TFV+
Sbjct: 1079 KCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVS 1138

Query: 270  VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
            V T CTHA +V +G  ++ +M   Y +   +EHY  +V L ++AG++ EA + I    G 
Sbjct: 1139 VFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI----GN 1194

Query: 330  LG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
            +    +A +WGALL  CRI+  + +    + KL  +   +   + L  ++Y E     + 
Sbjct: 1195 MEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDV 1254

Query: 389  NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             ++R  + E G++K  PG S I ++     F A D  H+ + E+
Sbjct: 1255 AEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEV 1298



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           A+S    +   +   +NA+  G        +SLEL+ RM++    P+  T+ +++   + 
Sbjct: 824 AVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF 883

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
           A   R G +L  ++   +G    ++    ++D  +  G + EA K  +E    +   D  
Sbjct: 884 AS--RFGESLQAHIWK-FGFGFHVKIQTTLIDFYSATGRIREARKVFDE----MPERDDI 936

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAE 363
            W  ++SA R    ++  N +  +++E
Sbjct: 937 AWTTMVSAYRRVLDMDSANSLANQMSE 963


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 224/394 (56%), Gaps = 11/394 (2%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G  +H +VVK GF    FV +SL+  Y     +  AR LF +   +++V+W  ++  Y  
Sbjct: 290 GKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYAD 349

Query: 110 MGDFENARELF---EKMPER-----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
           +G  + A  +F   EK  E      N VSWSA++  ++     +E L LFR+MQ   +K 
Sbjct: 350 LGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKA 409

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           N   + SVL+ CA L A+  G  +H +  R  ++ N+++   +++MY+K G       VF
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           E I NKD  +WN M++G  ++G  + ++  FD+M+K G +P   TFVAVL+ C+HA +V 
Sbjct: 470 EKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVA 529

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
           +G  LF+ M   + VEPQ+EHYAC+VDLL RAG+++EA K ++         +A VWGAL
Sbjct: 530 EGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMP---VEPNACVWGAL 586

Query: 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
           L++CR++   EV      ++  +      +++L  NIY  +G   ++ KVR      G+K
Sbjct: 587 LNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLK 646

Query: 402 KKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           K PG S I+V   V  F AG+ +HA+  E+YR++
Sbjct: 647 KTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRIL 680



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 181/387 (46%), Gaps = 10/387 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R  +   + + ++  Y  M  +G   + +TFP +I+AC ++G        VH HVV+ 
Sbjct: 106 ILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGS-RKLCRSVHGHVVEM 164

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V + L+  Y  + +M  AR +F++   R  V+W TMV GY    D   A E+F
Sbjct: 165 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 224

Query: 121 EKMP----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
             M     E N V+W++++++++R     E + LF +M+  G+      L  VL+    L
Sbjct: 225 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 284

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            A  +G  +H Y  +   E  + +  +++ +Y K G+V++A  +F  I  K+  +WNA+I
Sbjct: 285 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALI 344

Query: 237 SGVAMNGDAKKSLELFDRMVKSG----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           S  A  G   ++  +F ++ K+      +P   ++ AV+          + L LF  M  
Sbjct: 345 SSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ- 403

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           +  V+      A V+ + A    +    +     +  L  G+  V   L++     G  +
Sbjct: 404 LAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFK 463

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIY 379
            GN V+ K+    +  ++T V  Y I+
Sbjct: 464 EGNLVFEKIENKDLISWNTMVAGYGIH 490



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 8/224 (3%)

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLF 151
           R       +V  Y   G   +A+ +FE  P     N + W++I+ A       +E L ++
Sbjct: 64  RSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIY 123

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +M+++G+  +      V+ ACA +G+      VH +      + N+ +   ++ MY K 
Sbjct: 124 CRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKI 183

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G +  A  VFE ++ +   +WN M+SG A+N D   + E+F  M  +G +P   T+ ++L
Sbjct: 184 GRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLL 243

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLA 311
           ++        + + LF  M  + G+    E  A V    VDL A
Sbjct: 244 SSHARCGQHVETMELFGRMR-MRGIGATAEALAVVLSVSVDLAA 286



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 34/226 (15%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           + N+ T   ++  C  L  L + G  +H HVV+     +  V + L+  Y+         
Sbjct: 408 KANSVTIASVLSVCAELAAL-HLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 466

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +F+K  ++D+++W TMV GYG  G  ENA   F++M                 I D   
Sbjct: 467 LVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQM-----------------IKD--- 506

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV-HSYAKRYHLEKNVILATAVV 205
                      G +P+    V+VL+AC+H G + +G  +     K + +E  +     +V
Sbjct: 507 -----------GFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 555

Query: 206 DMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLE 250
           D+  + G +  A  V + +    +A  W A+++   M+ + + + E
Sbjct: 556 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEE 601


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/397 (35%), Positives = 224/397 (56%), Gaps = 11/397 (2%)

Query: 50   GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
            G  +H +VVK GF    FV +SL+  Y     +  AR LF +   +++V+W  ++  Y  
Sbjct: 1128 GKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYAD 1187

Query: 110  MGDFENARELF---EKMPE-----RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
            +G  + A  +F   EK  E      N VSWSA++  ++     +E L LFR+MQ   +K 
Sbjct: 1188 LGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKA 1247

Query: 162  NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
            N   + SVL+ CA L A+  G  +H +  R  ++ N+++   +++MY+K G       VF
Sbjct: 1248 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 1307

Query: 222  EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
            E I NKD  +WN M++G  ++G  + ++  FD+M+K G +P   TFVAVL+ C+HA +V 
Sbjct: 1308 EKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVA 1367

Query: 282  DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
            +G  LF+ M   + VEPQ+EHYAC+VDLL RAG+++EA K ++         +A VWGAL
Sbjct: 1368 EGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMP---VEPNACVWGAL 1424

Query: 342  LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
            L++CR++   EV      ++  +      +++L  NIY  +G   ++ KVR      G+K
Sbjct: 1425 LNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLK 1484

Query: 402  KKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
            K PG S I+V   V  F AG+ +HA+  E+YR++   
Sbjct: 1485 KTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDL 1521



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 176/375 (46%), Gaps = 12/375 (3%)

Query: 13   LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
            L ++C   M  +G   + +TFP +I+AC ++G        VH HVV+ GF  +  V + L
Sbjct: 958  LEIYCR--MRKLGVSADGFTFPLVIRACALMGS-RKLCRSVHGHVVEMGFQWNLHVGNEL 1014

Query: 73   LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP----ERNA 128
            +  Y  + +M  AR +F++   R  V+W TMV GY    D   A E+F  M     E N 
Sbjct: 1015 MGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNL 1074

Query: 129  VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
            V+W++++++++R     E + LF +M+  G+      L  VL+    L A  +G  +H Y
Sbjct: 1075 VTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAAFDEGKVIHGY 1134

Query: 189  AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
              +   E  + +  +++ +Y K G+V++A  +F  I  K+  +WNA+IS  A  G   ++
Sbjct: 1135 VVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYADLGWCDEA 1194

Query: 249  LELFDRMVKSG----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
              +F ++ K+      +P   ++ AV+          + L LF  M  +  V+      A
Sbjct: 1195 FAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ-LAKVKANSVTIA 1253

Query: 305  CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
             V+ + A    +    +     +  L  G+  V   L++     G  + GN V+ K+   
Sbjct: 1254 SVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENK 1313

Query: 365  GITDFSTHVLSYNIY 379
             +  ++T V  Y I+
Sbjct: 1314 DLISWNTMVAGYGIH 1328



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 8/216 (3%)

Query: 103  MVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
            +V  Y   G   +A+ +FE  P     N + W++I+ A       +E L ++ +M+++G+
Sbjct: 910  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 969

Query: 160  KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
              +      V+ ACA +G+      VH +      + N+ +   ++ MY K G +  A  
Sbjct: 970  SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 1029

Query: 220  VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279
            VFE ++ +   +WN M+SG A+N D   + E+F  M  +G +P   T+ ++L++      
Sbjct: 1030 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 1089

Query: 280  VRDGLNLFENMSAVYGVEPQLEHYACV----VDLLA 311
              + + LF  M  + G+    E  A V    VDL A
Sbjct: 1090 HVETMELFGRMR-MRGIGATAEALAVVLSVSVDLAA 1124



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 34/226 (15%)

Query: 27   EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            + N+ T   ++  C  L  L + G  +H HVV+     +  V + L+  Y+         
Sbjct: 1246 KANSVTIASVLSVCAELAAL-HLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 1304

Query: 87   ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
             +F+K  ++D+++W TMV GYG  G  ENA                              
Sbjct: 1305 LVFEKIENKDLISWNTMVAGYGIHGLGENA------------------------------ 1334

Query: 147  VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV-HSYAKRYHLEKNVILATAVV 205
             +  F QM + G +P+    V+VL+AC+H G + +G  +     K + +E  +     +V
Sbjct: 1335 -IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 1393

Query: 206  DMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLE 250
            D+  + G +  A  V + +    +A  W A+++   M+ + + + E
Sbjct: 1394 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEE 1439


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/394 (36%), Positives = 224/394 (56%), Gaps = 11/394 (2%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G  +H +VVK GF    FV +SL+  Y     +  AR LF +   +++V+W  ++  Y  
Sbjct: 290 GKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISSYAD 349

Query: 110 MGDFENARELF---EKMPER-----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
           +G  + A  +F   EK  E      N VSWSA++  ++     +E L LFR+MQ   +K 
Sbjct: 350 LGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAKVKA 409

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221
           N   + SVL+ CA L A+  G  +H +  R  ++ N+++   +++MY+K G       VF
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469

Query: 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281
           E I NKD  +WN M++G  ++G  + ++  FD+M+K G +P   TFVAVL+ C+HA +V 
Sbjct: 470 EKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVA 529

Query: 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341
           +G  LF+ M   + VEPQ+EHYAC+VDLL RAG+++EA K ++         +A VWGAL
Sbjct: 530 EGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMP---VEPNACVWGAL 586

Query: 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
           L++CR++   EV      ++  +      +++L  NIY  +G   ++ KVR      G+K
Sbjct: 587 LNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISAKTKGLK 646

Query: 402 KKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           K PG S I+V   V  F AG+ +HA+  E+YR++
Sbjct: 647 KTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRIL 680



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 181/387 (46%), Gaps = 10/387 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R  +   + + ++  Y  M  +G   + +TFP +I+AC ++G        VH HVV+ 
Sbjct: 106 ILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGS-RKLCRSVHGHVVEM 164

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V + L+  Y  + +M  AR +F++   R  V+W TMV GY    D   A E+F
Sbjct: 165 GFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMF 224

Query: 121 EKMP----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
             M     E N V+W++++++++R     E + LF +M+  G+      L  VL+    L
Sbjct: 225 RMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDL 284

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            A  +G  +H Y  +   E  + +  +++ +Y K G+V++A  +F  I  K+  +WNA+I
Sbjct: 285 AAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALI 344

Query: 237 SGVAMNGDAKKSLELFDRMVKSG----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           S  A  G   ++  +F ++ K+      +P   ++ AV+          + L LF  M  
Sbjct: 345 SSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQ- 403

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
           +  V+      A V+ + A    +    +     +  L  G+  V   L++     G  +
Sbjct: 404 LAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFK 463

Query: 353 VGNRVWRKLAEMGITDFSTHVLSYNIY 379
            GN V+ K+    +  ++T V  Y I+
Sbjct: 464 EGNLVFEKIENKDLISWNTMVAGYGIH 490



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 8/216 (3%)

Query: 103 MVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
           +V  Y   G   +A+ +FE  P     N + W++I+ A       +E L ++ +M+++G+
Sbjct: 72  VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
             +      V+ ACA +G+      VH +      + N+ +   ++ MY K G +  A  
Sbjct: 132 SADGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARK 191

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279
           VFE ++ +   +WN M+SG A+N D   + E+F  M  +G +P   T+ ++L++      
Sbjct: 192 VFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQ 251

Query: 280 VRDGLNLFENMSAVYGVEPQLEHYACV----VDLLA 311
             + + LF  M  + G+    E  A V    VDL A
Sbjct: 252 HVETMELFGRMR-MRGIGATAEALAVVLSVSVDLAA 286



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 34/226 (15%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           + N+ T   ++  C  L  L + G  +H HVV+     +  V + L+  Y+         
Sbjct: 408 KANSVTIASVLSVCAELAAL-HLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 466

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +F+K  ++D+++W TMV GYG  G  ENA                              
Sbjct: 467 LVFEKIENKDLISWNTMVAGYGIHGLGENA------------------------------ 496

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV-HSYAKRYHLEKNVILATAVV 205
            +  F QM + G +P+    V+VL+AC+H G + +G  +     K + +E  +     +V
Sbjct: 497 -IRTFDQMIKDGFEPDGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMV 555

Query: 206 DMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLE 250
           D+  + G +  A  V + +    +A  W A+++   M+ + + + E
Sbjct: 556 DLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEE 601


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 140/349 (40%), Positives = 201/349 (57%), Gaps = 7/349 (2%)

Query: 82  MGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           M TA   F  +P++ D V WT MV GY  +G+   A + FE MP RN VSW+A++A Y +
Sbjct: 158 MSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVK 217

Query: 141 ISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
            S   + L LFR M +E  ++PN S L SVL  C++L A+  G  +H +  +  L +N+ 
Sbjct: 218 NSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLT 277

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           + T++V MY KCG + SA  +F  +  +D  AWNAMISG A +GD K+++ LF+RM   G
Sbjct: 278 VGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEG 337

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +P   TFV VLT C H  +   G+  FE M  +YG+EP+++HY+C+VDLL RAG +E A
Sbjct: 338 VEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERA 397

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
             FI            + +G LL+ACR+Y  +E       KL E        +V   NIY
Sbjct: 398 VDFIRSMP---FEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIY 454

Query: 380 KEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
             A  WD + ++VR+ + +  + K PG S IE+ GV+ EF + D  H Q
Sbjct: 455 AVANQWD-DVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQ 502



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 137/297 (46%), Gaps = 33/297 (11%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  AR LFD+ P  DVV++ T++  +   GD + AR LF  MP R+  SW+ +++  S+
Sbjct: 64  RLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSK 123

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               +E   +F  M  V    + + +VS       +    +  W  +  ++    ++ +L
Sbjct: 124 SGAVEEAKVVFLAM-PVRNSVSWNAMVSGFACSGDMSTAEE--WFRNAPEK----EDAVL 176

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SG 259
            TA+V  Y   G+V  A+  FE +  ++  +WNA+++G   N  A  +L LF  MV+ + 
Sbjct: 177 WTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREAN 236

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            QP  +T  +VL  C+             N+SA+ G   Q+ H  C+  LL+R   V  +
Sbjct: 237 VQPNASTLSSVLLGCS-------------NLSAL-GFGKQI-HQWCMKLLLSRNLTVGTS 281

Query: 320 EKFIEEKMGGLGGG----------DANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
              +  K G L             D   W A++S    +G  +    ++ ++ + G+
Sbjct: 282 LVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 34/226 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++ GY++ +    ++  +  M+ +   +PN  T   ++  C  L  L  FG  +H   +K
Sbjct: 211 VVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSAL-GFGKQIHQWCMK 269

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                +  V +SL+  Y     + +A  LF +   RDVV W  M+ GY + GD + A  L
Sbjct: 270 LLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINL 329

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           FE+                               M++ G++PN    V VLTAC H G  
Sbjct: 330 FER-------------------------------MKDEGVEPNWITFVVVLTACIHTGLC 358

Query: 180 TQGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
             G+       + Y +E  V   + +VD+  + G +  A+     +
Sbjct: 359 DFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSM 404


>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
          Length = 545

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 234/421 (55%), Gaps = 8/421 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY +      +   +  M      P+++T   L K    LG L + G  +H   ++ 
Sbjct: 95  LINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFS-GKSIHGKSIRI 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  V +S++  Y        +R +FD+   R+  +W  ++ GY   G+    R +F
Sbjct: 154 GFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVF 213

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAI 179
           ++M  RN  SW+A++  Y    D  E LSLFR MQ + G++PN   LVSVL AC+    +
Sbjct: 214 DRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGL 273

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
             G  +H +A R  L   V L  A++DMYSKCG + SA  VFE  S  KDA +W++MISG
Sbjct: 274 LSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISG 333

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
             ++G  ++++ L+D+M+++G +P   T V +L+ C+ + +V +GLN++ ++   YG+EP
Sbjct: 334 YGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEP 393

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            LE +AC+VD+L RAG ++ A  FI+      G    +VWGAL+S   I+G +E+    +
Sbjct: 394 TLEIFACIVDMLGRAGQLDPALDFIKAMPVEPG---PSVWGALVSCSIIHGDLEMQELAY 450

Query: 359 RKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
           R L ++   + S +V   N+Y  +  WD  A +VR+++ +  ++K PGCS I +N     
Sbjct: 451 RFLIQLEPENPSNYVSISNLYASSRRWDAVA-EVRRMMKDKRLRKVPGCSWISINNKTHC 509

Query: 418 F 418
           F
Sbjct: 510 F 510



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 136/298 (45%), Gaps = 36/298 (12%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y       ++R +F+ +  +N   W++++  Y++   + E   LF QM    + 
Sbjct: 62  TKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFNQMCSSDVL 121

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P++  L ++    + LGA+  G  +H  + R     + ++A +++ MY KCG+   +  V
Sbjct: 122 PDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKV 181

Query: 221 FEGISNKDAGAWNAMISGVAM-------------------------------NGDAKKSL 249
           F+ ++ +++G+WN +I+G A+                               NGD+ ++L
Sbjct: 182 FDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEAL 241

Query: 250 ELF-DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
            LF D  V  G +P   + V+VL  C+    +  G  +    +    +  ++     ++D
Sbjct: 242 SLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQI-HGFAVRKELNNEVSLCNALID 300

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           + ++ G ++ A +  E+        DA  W +++S   ++GK +    ++ K+ + GI
Sbjct: 301 MYSKCGSLDSARRVFEDDS---LCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGI 355



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 91/203 (44%), Gaps = 8/203 (3%)

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
           HS      L +N +LAT ++  Y+ C H + +  VF+ + +K+   WN++I+G A N   
Sbjct: 46  HSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLY 105

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
            ++ +LF++M  S   P + T   +    +    +  G ++    S   G          
Sbjct: 106 NEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSI-HGKSIRIGFVSDTVVANS 164

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++ +  + G  EE+ K  +E    +   ++  W  L++   + G + VG RV+ ++    
Sbjct: 165 IMSMYCKCGNFEESRKVFDE----MTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRN 220

Query: 366 ITDFSTHVLSYNIYKEAGWDMEA 388
           +  ++  +   N Y E G   EA
Sbjct: 221 VFSWTAMI---NGYVENGDSDEA 240


>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 528

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/341 (41%), Positives = 206/341 (60%), Gaps = 8/341 (2%)

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM-PERNAVSWSAIMAAYSRIS 142
           T R + D     DVV    ++D Y K GD   AR  F +M P +N VSW+ ++AA +R  
Sbjct: 176 THRRVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAACARSG 235

Query: 143 DFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
           D +E LS FR+MQ  G ++P+++  V+VL ACA LGA+  G WVH+Y    H  K V++ 
Sbjct: 236 DTREALSWFREMQRSGCVRPDDATFVAVLGACADLGALDAGRWVHAYMMGRH-TKAVVVG 294

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
            A++DMY+KCG V  A  VF+ +  +D   + +MISG+AM+G  +++L L   M ++G +
Sbjct: 295 NALLDMYAKCGAVDGAKEVFDAMPRRDVYTYTSMISGLAMHGRGQEALALLADMRRAGVR 354

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   TF+ VL+ C HA +V +GL  F  +    GV P +EHY CVVD+L RAG ++EAE+
Sbjct: 355 PNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLGVAPGIEHYGCVVDMLGRAGRLDEAEE 414

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM--GITDFSTHVLSYNIY 379
            +          DA +WG+LLSACR +G +    RV R++A++   + D   +VL  N+Y
Sbjct: 415 LVARMP---ARPDALIWGSLLSACRAHGHVARAERVMRRMADVDGDLADAGDYVLMSNMY 471

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
              G   +A ++RK +    M K PGCS+IE++GVV EF A
Sbjct: 472 ASKGRHGKAVQLRKQMRRGRMDKVPGCSLIEIDGVVHEFRA 512



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 104/242 (42%), Gaps = 35/242 (14%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
           L+K+     P       +HAHVVK G  +   V   L+  Y    +   ARALF++    
Sbjct: 60  LLKSLTNTCPAAEEAEALHAHVVKLGCLDRRRVRDGLVALYLACGQGAVARALFERGAP- 118

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           DVV+WT MV G+ ++G FE A  LF  M        +   AA          L L R+  
Sbjct: 119 DVVSWTAMVTGHTRLGLFEEAAALFLAM-ADGVAVDAVAAAAAFAACAGAGDLGLARETH 177

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
                        VL A   L                    +V+   A++DMY+KCG   
Sbjct: 178 R-----------RVLDAGVAL--------------------DVVACNALIDMYAKCGDAA 206

Query: 216 SALSVFEG-ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTT 273
           +A   F   +  K+  +WN MI+  A +GD +++L  F  M +SG  +P + TFVAVL  
Sbjct: 207 AARRCFRRMLPAKNVVSWNTMIAACARSGDTREALSWFREMQRSGCVRPDDATFVAVLGA 266

Query: 274 CT 275
           C 
Sbjct: 267 CA 268


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 147/444 (33%), Positives = 251/444 (56%), Gaps = 10/444 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+   F + +      M  +G + + YT+  +I A    G L N G  VHA+V++ 
Sbjct: 245 MISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAG-LFNIGRQVHAYVLRT 303

Query: 61  GFGED-PFVVS---SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
                  FV+S   +L+  Y+   K+  AR +FDK P +D+V+W  ++ G       E A
Sbjct: 304 VVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEA 363

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
             +F +MP R+ ++W+ +++  ++    +E L LF QM+  G++P +      + +C+ L
Sbjct: 364 NSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVL 423

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G++  G  +HS   +   + ++ +  A++ MYS+CG V +A +VF  +   D+ +WNAMI
Sbjct: 424 GSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMI 483

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           + +A +G   ++++L+++M+K    P   TF+ +L+ C+HA +V++G + F+ M   YG+
Sbjct: 484 AALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGI 543

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P+ +HY+ ++DLL RAGM  EA K + E M    G  A +W ALL+ C I+G +E+G +
Sbjct: 544 TPEEDHYSRLIDLLCRAGMFSEA-KNVTESMPFEPG--APIWEALLAGCWIHGNMELGIQ 600

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
              +L E+      T++   N+Y   G WD E  +VRKL+ E G+KK+PGCS IEV  +V
Sbjct: 601 AADRLLELMPQQDGTYISLSNMYAALGQWD-EVARVRKLMRERGVKKEPGCSWIEVENMV 659

Query: 416 EEFLAGDNRHAQAGEIYRVIHSFL 439
             FL  D  H +   +YR +   +
Sbjct: 660 HVFLVDDAVHPEVHAVYRYLEQLV 683



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 188/395 (47%), Gaps = 51/395 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  +  ++    ++  ++ M  +GF P+ +TF  ++ A  ++   E     +H  V K+
Sbjct: 101 MITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKW 160

Query: 61  GFGEDPFVVSSLLEFY------SLVHK---MGTARALFDKSPD--RDVVTWTTMVDGYGK 109
           G    P V+++L+  Y       LV+    M  AR LFD++P   RD   WTT++ GY +
Sbjct: 161 GALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVR 220

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
             D   AREL E M +  AV+W+A+++ Y     ++E   L R+M  +G++ +E    SV
Sbjct: 221 NDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSV 280

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKN----VILATAVVDMYSKCGHVHSALSVFEGIS 225
           ++A ++ G    G  VH+Y  R  ++ +    + +  A++ +Y++CG +  A  VF+ + 
Sbjct: 281 ISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMP 340

Query: 226 NKDAGAWNA-------------------------------MISGVAMNGDAKKSLELFDR 254
            KD  +WNA                               MISG+A NG  ++ L+LF++
Sbjct: 341 VKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQ 400

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           M   G +P +  +   + +C+    + +G  L   +  + G +  L     ++ + +R G
Sbjct: 401 MKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQL-GHDSSLSVGNALITMYSRCG 459

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           +VE A+         +   D+  W A+++A   +G
Sbjct: 460 LVEAADTVFLT----MPYVDSVSWNAMIAALAQHG 490



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 173/388 (44%), Gaps = 58/388 (14%)

Query: 48  NFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY 107
           +F   VHAH++  GF   P +++ L++ Y     +  AR LFDK P  D+V  TTM+  Y
Sbjct: 13  SFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAY 72

Query: 108 GKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
              G+ + A +LF   P   R+ VS++A++ A+S   D    L LF QM+ +G  P+   
Sbjct: 73  SAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFT 132

Query: 166 LVSVL----------TACAHL-------GAIT--------QGLWVHSYAKRYHLEKNVIL 200
             SVL          T C  L       GA++           +V S A    +   V++
Sbjct: 133 FSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYV-SCASSPLVNSCVLM 191

Query: 201 A-------------------TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           A                   T ++  Y +   + +A  + EG+++  A AWNAMISG   
Sbjct: 192 AAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVH 251

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-- 299
            G  +++ +L  RM   G Q  E T+ +V++  ++A +   G  +   +     V+P   
Sbjct: 252 RGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTV-VQPSGH 310

Query: 300 --LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             L     ++ L  R G + EA +  ++    +   D   W A+LS C    +IE  N +
Sbjct: 311 FVLSVNNALITLYTRCGKLVEARRVFDK----MPVKDLVSWNAILSGCVNARRIEEANSI 366

Query: 358 WRKLAEMGITDFSTHV--LSYNIYKEAG 383
           +R++    +  ++  +  L+ N + E G
Sbjct: 367 FREMPVRSLLTWTVMISGLAQNGFGEEG 394


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 137/338 (40%), Positives = 200/338 (59%), Gaps = 5/338 (1%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A  LF   P+R+V++W  ++ G+ + G  E A +LF+ MPE N VSW+A++A YS+    
Sbjct: 310 AFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQA 369

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           +  L LF QMQ V MKPN      VL ACA L  + QG   H    R   + +V++   +
Sbjct: 370 ENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTL 429

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           V MY+KCG +  A  VF+ +  +D+ + +AMI G A+NG +K+SLELF++M  +G +P  
Sbjct: 430 VGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDR 489

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFV VL+ C HA +V +G   F+ M+  Y + P +EHY C++DLL RAG  +EA   I 
Sbjct: 490 VTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLI- 548

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
            KM      DA++WG+LLSACR +  I++G +V + L  +   + + +VL  NIY  AG 
Sbjct: 549 NKMP--IKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGR 606

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAG 421
           WD +   VR  + +  +KKK GCS I +   V  FL G
Sbjct: 607 WD-DIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 173/326 (53%), Gaps = 17/326 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y +    + ++  + +M D+G +PN++TF  ++ AC     LE  G F H  +VK 
Sbjct: 137 MIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACT---DLEVLGEF-HDEIVKG 192

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + FV + L++ Y+    +  AR LFDK P RDVV+W  M+ GY + G  E+A +LF
Sbjct: 193 GFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLF 252

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++P+R+ ++W+ +MA Y++  D +  + LF +M        E  LVS  T  A  G + 
Sbjct: 253 QEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMP-------EQNLVSWNTMIA--GYVQ 303

Query: 181 QGLWVHSYAKRYHL--EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
            G  V    K + +  E+NVI   AV+  +++ G V  AL +F+ +   +  +WNAMI+G
Sbjct: 304 NGS-VKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAG 362

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            + NG A+ +L+LF +M     +P   TF  VL  C    ++  G N    +    G + 
Sbjct: 363 YSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQG-NEAHEVVIRSGFQS 421

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIE 324
            +     +V + A+ G +E+A K  +
Sbjct: 422 DVLVGNTLVGMYAKCGSIEDARKVFD 447



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 167/360 (46%), Gaps = 51/360 (14%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           DM++ G  P++ T+  L++ C+    L +    +HAH+++  F                 
Sbjct: 54  DMVENGIWPHSSTYDSLLQGCLNAKSLPD-AKLLHAHMIQTQF----------------- 95

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                          +D+     +V  Y K+G    AR +F++MP +N VSW+A++AAY+
Sbjct: 96  -------------ECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYA 142

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           R    +E L  F +MQ+VG++PN     S+L AC  L  + +    H    +   E NV 
Sbjct: 143 RHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTDLEVLGE---FHDEIVKGGFESNVF 199

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           +   +VDMY+K G +  A  +F+ +  +D  +WNAMI+G   NG  + +L+LF  + K  
Sbjct: 200 VGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRD 259

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
              T  T +A    C     V + + LFE M      E  L  +  ++    + G V+EA
Sbjct: 260 V-ITWNTMMAGYAQCGD---VENAVELFEKMP-----EQNLVSWNTMIAGYVQNGSVKEA 310

Query: 320 EKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
            K  +         + NV  W A++S     G++E   ++++ + E  +  ++  +  Y+
Sbjct: 311 FKLFQIM------PERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYS 364



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 104/242 (42%), Gaps = 38/242 (15%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY Q    +  L +F  + M+DM  +PN  TF  ++ AC  L  LE  G   H  V+
Sbjct: 359 MIAGYSQNGQAENALKLFGQMQMVDM--KPNTETFAIVLPACAALAVLEQ-GNEAHEVVI 415

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF  D  V ++L+  Y+    +  AR +FD+   +D  + + M+ GY   G  + + E
Sbjct: 416 RSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLE 475

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LFE                               QMQ  G+KP+    V VL+AC H G 
Sbjct: 476 LFE-------------------------------QMQFTGLKPDRVTFVGVLSACCHAGL 504

Query: 179 ITQGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           + +G        R YH+   +     ++D+  + G    A  +   +  K DA  W +++
Sbjct: 505 VDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLL 564

Query: 237 SG 238
           S 
Sbjct: 565 SA 566


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/412 (33%), Positives = 229/412 (55%), Gaps = 20/412 (4%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
             P+++ F  L+KAC  LG +++ G  VH H +   +  D  V SSL++ Y+    + +A
Sbjct: 169 LRPDDFVFSALVKACANLGSIDH-GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSA 227

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           +A+FD    ++ ++WT MV GY K G  E A ELF  +P +N  SW+A+++ + +     
Sbjct: 228 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGL 287

Query: 146 EVLSLFRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           E  S+F +M+   +   +   L S++ ACA+L A   G  VH                A+
Sbjct: 288 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH--------------GNAL 333

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KC  V +A  +F  + ++D  +W ++I G+A +G A+K+L L+D MV  G +P E
Sbjct: 334 IDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNE 393

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFV ++  C+H   V  G  LF++M+  YG+ P L+HY C++DLL R+G+++EAE  I 
Sbjct: 394 VTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIH 453

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL-AEMGITDFSTHVLSYNIYKEAG 383
                    D   W ALLSAC+  G+ ++G R+   L +   + D ST++L  NIY  A 
Sbjct: 454 TMP---FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASAS 510

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              + ++ R+ + E  ++K PG S +EV    E F AG+  H    +I+R++
Sbjct: 511 LWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 562



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 126/234 (53%), Gaps = 15/234 (6%)

Query: 34  PPLIKACVILGPLENFGMFVHAHVVK---------FGFGEDPFVVSSLLEFYSLVHK-MG 83
           PPL++    +  L+    F  + VV+         F F    FV      ++S +++ + 
Sbjct: 29  PPLVELISSIIFLKKLNGFRKSIVVRRKKLLFSLTFIFMFKLFVFFDFGSYFSRMNRTLT 88

Query: 84  TARALFDKSPDRDVVTW----TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
           TA+AL        +V       T+V+ YGK G   +A ++F++MP R+ ++W++++ A +
Sbjct: 89  TAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALN 148

Query: 140 RIS-DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV 198
           + +   K +          G++P++    +++ ACA+LG+I  G  VH +        + 
Sbjct: 149 QANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDE 208

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           ++ +++VDMY+KCG ++SA +VF+ I  K+  +W AM+SG A +G  +++LELF
Sbjct: 209 VVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELF 262



 Score = 41.2 bits (95), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/185 (20%), Positives = 89/185 (48%), Gaps = 8/185 (4%)

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +T    +H++  +  + +   LA  +V++Y KCG    AL VF+ + ++D  AW ++++ 
Sbjct: 87  LTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTA 146

Query: 239 VAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGV 296
           +     + K+L +F  +  S   +P +  F A++  C +   +  G  +  + + + Y  
Sbjct: 147 LNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYAN 206

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +  ++  + +VD+ A+ G++  A+   +     +   +   W A++S     G+ E    
Sbjct: 207 DEVVK--SSLVDMYAKCGLLNSAKAVFD----SIRVKNTISWTAMVSGYAKSGRKEEALE 260

Query: 357 VWRKL 361
           ++R L
Sbjct: 261 LFRIL 265


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/442 (34%), Positives = 239/442 (54%), Gaps = 5/442 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q    +     Y +M+D  GF PN  T   +++AC     L  FGM VH  +V 
Sbjct: 198 MISGYSQGGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLA-FGMEVHKFIVD 256

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                D  V ++L+  Y+    +  AR LFD+  ++D VT+  ++ G    G  + + EL
Sbjct: 257 NQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLEL 316

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F  M  +   +W+A++    + +  + VL L R+MQ +G +PN   L SVL+  A+  ++
Sbjct: 317 FRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSL 376

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +HSYA +    +N+ +ATA++DMY+K G++  A  VF+   ++    W A+IS  
Sbjct: 377 KGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAY 436

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           A++GDA  +L LF  M+K G QP   TF AVL  C H  MV     +FE+M   YG++P 
Sbjct: 437 AVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPL 496

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHYACVV  L +A  + EA++F+  KM       A VWGALL    I   +E+G  V  
Sbjct: 497 VEHYACVVGALGKARRLSEAKEFV-SKMP--IEPSAKVWGALLHGASISSDVELGKSVCD 553

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L E+   +   +V+  N+Y +AG   EA++VR+ +++ G++K PG S IE +  +  F+
Sbjct: 554 YLFEIEPENTGNYVIMANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIETSEGLRSFI 613

Query: 420 AGDNRHAQAGEIYRVIHSFLKM 441
           A D       EI+ ++   L +
Sbjct: 614 ATDTCTENVEEIHVILKGLLGL 635



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 156/349 (44%), Gaps = 66/349 (18%)

Query: 49  FGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG 108
            G  VH  V++ GF  D FV ++L+ +YS  + +  +R +FD+   RDVV+W +M+ GY 
Sbjct: 144 LGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYS 203

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           + G +E+ + L+ +M                   DF             G +PN   +VS
Sbjct: 204 QGGLYEDCKTLYREMV------------------DFS------------GFRPNGVTVVS 233

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL AC     +  G+ VH +     +E ++ +  A++ +Y+KCG +  A  +F+ +S KD
Sbjct: 234 VLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMSEKD 293

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKS------------------------------ 258
              + A+ISG+ ++G   +SLELF  M                                 
Sbjct: 294 EVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVREMQA 353

Query: 259 -GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P   T  +VL+T  +   ++ G  +  + +   G    +     ++D+ A++G + 
Sbjct: 354 LGFRPNAVTLSSVLSTIAYFSSLKGGKEI-HSYAIKIGYHRNIYVATAIIDMYAKSGYLR 412

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            A++  ++           +W A++SA  ++G   +   ++ ++ + GI
Sbjct: 413 GAQRVFDQS----KDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGI 457



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 134/275 (48%), Gaps = 11/275 (4%)

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
           LF  +P+  + +   +V  Y K      AR +F+++P +N  S++A++ +YS  +   + 
Sbjct: 52  LFSVTPENYLAS--KLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNRHGDA 109

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAH--LGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           L LF  +    +  N S +  +L + +   L  +  G  VH +  R   + +V +  A++
Sbjct: 110 LDLFSSLASSNLVNNIS-ITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALI 168

Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQPTE 264
             YSKC  +  +  VF+ ++ +D  +WN+MISG +  G  +    L+  MV  SG +P  
Sbjct: 169 TYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGFRPNG 228

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            T V+VL  C   + +  G+ + + +     VE  +     ++ L A+ G ++ A +  +
Sbjct: 229 VTVVSVLQACGQTQDLAFGMEVHKFI-VDNQVEIDISVCNALIGLYAKCGSLDYARELFD 287

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           E    +   D   +GA++S   ++G ++    ++R
Sbjct: 288 E----MSEKDEVTYGAIISGLMLHGYVDQSLELFR 318


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 144/438 (32%), Positives = 238/438 (54%), Gaps = 36/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY+     + ++F Y +ML+ G E +N+T+P L KAC  L  +E  GM +H ++ K 
Sbjct: 56  MIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEE-GMQIHGYIFKR 114

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL+  Y    K+  + ++F+    RDV +W                    
Sbjct: 115 GLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASW-------------------- 154

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
                      SAI+AA++ +  + E LS+F +M   G  +P ES LVSVL+AC HLGA+
Sbjct: 155 -----------SAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGAL 203

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G   H    R   E NVI+ T+++DMY KCG +   LS+F+ +  K+  +++ MI+G+
Sbjct: 204 DLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGL 263

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G   ++L++F  M++ G +P +  ++ VL+ C HA +V +GL  F  M   +G+EP 
Sbjct: 264 AMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPT 323

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY C+V L+ RAGM+ +A   +E         +  VW  LLSAC+ +  +E+G    +
Sbjct: 324 IQHYGCIVHLMGRAGMLNKA---LEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAK 380

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L E+  ++   +V+  N+Y  A    +  K+R  ++  G  + PG S+++V   + +F+
Sbjct: 381 SLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFV 440

Query: 420 AGDNRHAQAGEIYRVIHS 437
           + D  H Q   +Y +IH 
Sbjct: 441 SQDMSHPQCKGMYEMIHQ 458



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G  + A  +F ++ +     ++ ++  Y  + + +  L L+ +M E G++ +     ++ 
Sbjct: 33  GSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALF 92

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            ACA L +I +G+ +H Y  +  LE ++ +  ++++MY KCG +  + SVFE +  +D  
Sbjct: 93  KACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVA 152

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTH 276
           +W+A+I+  A  G   + L +F  M + G+ +P E+  V+VL+ CTH
Sbjct: 153 SWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTH 199


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 144/422 (34%), Positives = 230/422 (54%), Gaps = 36/422 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ G+   N  +  +  + +++  G   N YT+  +++ C  L  L  FG  VHA V+K 
Sbjct: 435 LLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLR-FGCQVHACVLKS 493

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D + VS +L                              +D Y + G F NAR +F
Sbjct: 494 GFQGD-YDVSKML------------------------------LDMYVQAGCFTNARLVF 522

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +++ ER+  SW+ +M+ Y++  + ++ +  FR M     +PN++ L + L+ C+ L  + 
Sbjct: 523 DRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLG 582

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            GL +HSY  +     +V+ ++A+VDMY KCG++  A  +F+     D   WN +I G A
Sbjct: 583 SGLQLHSYTIKSGWNSSVV-SSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYA 641

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G   K+LE F  M+  G  P E TFV VL+ C+HA ++ +G   F+ +S+VYG+ P L
Sbjct: 642 QHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTL 701

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VD+LA+AG + EAE  I E        DA++W  +L ACR++G IE+  R   K
Sbjct: 702 EHYACMVDILAKAGKLAEAESLINEMP---LTPDASLWKTILGACRMHGNIEIAERAAEK 758

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E    D S+ +L  NIY +     +  K+R ++ + G+KK+PGCS IE+NG +  FL+
Sbjct: 759 LFESQPDDISSCILLSNIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKLHVFLS 818

Query: 421 GD 422
            D
Sbjct: 819 QD 820



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 61/361 (16%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + +M + G  PN +     +KAC +   L  F   VHA  VK     DP+V SSL+E Y 
Sbjct: 149 FAEMSEEGVVPNGFALAAALKACTVGSDL-GFTPQVHAQAVKLEGLFDPYVSSSLVEAYV 207

Query: 78  LVHKMGTA-RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
              ++  A RAL D                                 P R+ VSW+A++ 
Sbjct: 208 SCGEVDVAERALLDS--------------------------------PVRSDVSWNALLN 235

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
            Y+R  D+ +V+ +F ++ E G + ++  L +VL  C  LG    G  VH    +  LE 
Sbjct: 236 EYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLET 295

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           + +L   +++MYSKC     A  VF  I   D    + MIS    +  A ++ ++F +M 
Sbjct: 296 DRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMS 355

Query: 257 KSGTQPTETTFVAV-----------LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
             G +P + TFV +           L    HA +V+ G +  + +               
Sbjct: 356 DMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDA------------ 403

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           +V +  + G V++A    +     + G D   W  LLS        E G R++++L   G
Sbjct: 404 IVGMYVKTGAVQDAILAFDL----MQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEG 459

Query: 366 I 366
           +
Sbjct: 460 V 460



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 116/266 (43%), Gaps = 32/266 (12%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           +++ G E + YT P ++K C+ LG L   G  VH  V+K G   D  + + L+E YS   
Sbjct: 253 LVESGDEISKYTLPTVLKCCMELG-LAKSGQAVHGLVIKRGLETDRVLNNCLIEMYS--- 308

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                                       K    E+A E+F ++ E + V  S +++ + R
Sbjct: 309 ----------------------------KCLSAEDAYEVFARIDEPDVVHCSLMISCFDR 340

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
                E   +F QM ++G+KPN+   V +    +  G +     +H++  +    +   +
Sbjct: 341 HDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGV 400

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             A+V MY K G V  A+  F+ +   D  +WN ++SG     + +  L +F  ++  G 
Sbjct: 401 CDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGV 460

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNL 286
              + T+V +L  CT    +R G  +
Sbjct: 461 LANKYTYVGILRCCTSLMDLRFGCQV 486



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 122/273 (44%), Gaps = 38/273 (13%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G  +HA +++ G   D F+  SLL  Y    ++  AR++FD  P RDVV WT MV     
Sbjct: 79  GKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMV----- 133

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
                                 SAI AA     D    L LF +M E G+ PN   L + 
Sbjct: 134 ----------------------SAITAA----GDAGAALRLFAEMSEEGVVPNGFALAAA 167

Query: 170 LTAC---AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           L AC   + LG   Q   VH+ A +     +  +++++V+ Y  CG V  A         
Sbjct: 168 LKACTVGSDLGFTPQ---VHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPV 224

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           +   +WNA+++  A +GD  K + +FD++V+SG + ++ T   VL  C    + + G   
Sbjct: 225 RSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSG-QA 283

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
              +    G+E       C++++ ++    E+A
Sbjct: 284 VHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDA 316



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 131/308 (42%), Gaps = 34/308 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ M DMG +PN YTF  L       G + N    +HAH+VK GF     V  +++  Y 
Sbjct: 351 FMQMSDMGVKPNQYTFVGLAIVASRTGDV-NLCRSIHAHIVKSGFSRTKGVCDAIVGMYV 409

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               +  A   FD     D+ +W T++ G+    + E+                      
Sbjct: 410 KTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHG--------------------- 448

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
                     L +F+++   G+  N+   V +L  C  L  +  G  VH+   +   + +
Sbjct: 449 ----------LRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGD 498

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             ++  ++DMY + G   +A  VF+ +  +D  +W  ++S  A   + +K++E F  M++
Sbjct: 499 YDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLR 558

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +P + T    L+ C+    +  GL L  + +   G    +   A +VD+  + G + 
Sbjct: 559 ENKRPNDATLATSLSVCSDLACLGSGLQL-HSYTIKSGWNSSVVSSA-LVDMYVKCGNLA 616

Query: 318 EAEKFIEE 325
           +AE   +E
Sbjct: 617 DAEMLFDE 624



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           + L  CA   A+ +G  +H+   R     +  L  ++++MY KCG +  A SVF+G+ ++
Sbjct: 65  AALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHR 124

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           D  AW AM+S +   GDA  +L LF  M + G  P      A L  CT
Sbjct: 125 DVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACT 172


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/510 (30%), Positives = 256/510 (50%), Gaps = 77/510 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ Q  + K ++     M   GFEPN  T   ++ AC  L  L N G  +H +V + 
Sbjct: 17  VIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNL-NLGKEIHGYVTRH 75

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +PFVV+ L++ Y     MG+A  +F     ++VV++ TM+ GY + G+ E A+ELF
Sbjct: 76  GFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELF 135

Query: 121 EKM-------------------------------------PERNAVSWSAIMAAYSRISD 143
           ++M                                      ER+  +W+ +++ Y+  + 
Sbjct: 136 DQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVLISGYACCNQ 195

Query: 144 FKEVLSLFRQMQEVGMKPNE---SGLVS-------------------------------- 168
            + + +L ++M+  G +PN    +G++S                                
Sbjct: 196 LENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGI 255

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           +L ACA L  I +G  VH+++ R   E +V +  A+VDMY+KCG +  A+ V+  ISN +
Sbjct: 256 ILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQVYNRISNPN 315

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
             + NAM++  AM+G   + + LF  M+ +G +P   TF++VL++C HA  V  G   F+
Sbjct: 316 LVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFD 375

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
            M+  Y V P L+HY C+VDLL+RAG ++EA + +++        D+ +WGALL  C I+
Sbjct: 376 LMT-YYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIP---RKPDSVMWGALLGGCVIW 431

Query: 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
           G +E+G      L E+   +   +VL  N+Y  AG   + ++ R++I + GM K PGCS 
Sbjct: 432 GNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHKSPGCSW 491

Query: 409 IEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438
           IE    +  FL+ D  H +  +IY  + + 
Sbjct: 492 IEDREDIHVFLSCDKSHEKTEDIYTTLDNL 521



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/263 (31%), Positives = 124/263 (47%), Gaps = 31/263 (11%)

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           N VSWSA++  +++    KE L L  +MQ  G +PN   L SVL ACA L  +  G  +H
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
            Y  R+    N  +   +VD+Y +C  + SAL +F G S K+  ++N MI G   NG+ +
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 247 KSLELFDRMVKSGTQPTE-----TTFVAVLTTCTH---AKMVRDGLNLFENMSAVYGVEP 298
           K+ ELFD+M   G          + +   L  C     A++  DG+   E  +A + V  
Sbjct: 130 KAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVT--ERDTATWNV-- 185

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNR 356
            +  YAC   L       E  +  I++  G   G + NV  W  ++S     G +E G+ 
Sbjct: 186 LISGYACCNQL-------ENIQNLIQKMKG--DGFEPNVYTWNGIIS-----GHVENGH- 230

Query: 357 VWRKLAEMGITDFSTHVLSYNIY 379
              +LA    T+  T  L  +IY
Sbjct: 231 --NELALRLFTEMQTSSLRPDIY 251


>gi|356515150|ref|XP_003526264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g10330-like [Glycine max]
          Length = 503

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 236/423 (55%), Gaps = 24/423 (5%)

Query: 1   MIRGYMQANFPK-LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I  Y   N  K LS+F +  ML     PN++TFPPL+K    + PL   G  +H+  +K
Sbjct: 92  LISAYHIHNHNKALSIFTH--MLANQAPPNSHTFPPLLK----ISPLP-LGATLHSQTLK 144

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   D F++++LL  Y+  H +  AR +F++ P   +V    M++ +   GD E A  L
Sbjct: 145 RGLLSDGFILTTLLALYARNHLLPHARMVFEEFPMFCIVACNAMINAFSMNGDMEAAVAL 204

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-----VGM-KPNESGLVSVLTAC 173
           FE+MP R+  SW+ ++  ++   +F   +  FR M        G+ KPNE+   SVL++C
Sbjct: 205 FERMPRRDVFSWTTVVDGFALKGNFGASIRFFRNMMNHKDVVAGLVKPNEATCSSVLSSC 264

Query: 174 AHL---GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
           A+L    A+  G  VH Y     ++  V + T+++ +Y K G + +A +VF  +  ++  
Sbjct: 265 ANLDGKAALDWGKQVHGYVVMNEVKLGVFVGTSLIHLYGKMGCLSNAENVFRVMVVREVC 324

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            WNAMIS +A +G  K +L++FDRM   G +P   TF AVLT C    +VR+GL+LF +M
Sbjct: 325 TWNAMISSLASHGREKNALDMFDRMKLHGLKPNSITFAAVLTACARGNLVREGLDLFRSM 384

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
              +G+EP L+HY CV+DLL RAG +EEA + I          DA+V GA L ACRI+G 
Sbjct: 385 WYDFGIEPNLKHYGCVIDLLGRAGHIEEAAEIIRNMP---FQPDASVLGAFLGACRIHGA 441

Query: 351 IEVGNRVWRKLAEMGITDFSTHVL--SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408
           IE+G  + + +  +       +VL  S N  KE  WD  AN +R+ I E G++K P  S+
Sbjct: 442 IELGEEIGKNMLRLQTQHSGQYVLLSSMNAEKER-WDRAAN-LRREIMEAGIQKIPAYSM 499

Query: 409 IEV 411
           + +
Sbjct: 500 LHL 502


>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 145/464 (31%), Positives = 248/464 (53%), Gaps = 40/464 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           + +G++  + P  S+  Y+ ML     P++YT+  L+KA         FG  + AH+ KF
Sbjct: 97  LFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS---RFGESLQAHIWKF 153

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---------------- 104
           GFG    + ++L++FYS    +  AR +FD+ P+RD + WTTMV                
Sbjct: 154 GFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLA 213

Query: 105 ---------------DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                          +GY  +G+ E A  LF +MP ++ +SW+ ++  YS+   ++E ++
Sbjct: 214 NQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIA 273

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F +M E G+ P+E  + +V++ACAHLG +  G  VH Y  +     +V + +A+VDMYS
Sbjct: 274 VFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYS 333

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
           KCG +  AL VF  +  K+   WN++I G+A +G A+++L++F +M     +P   TFV+
Sbjct: 334 KCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVS 393

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
           V T CTHA +V +G  ++ +M   Y +   +EHY  +V L ++AG++ EA + I    G 
Sbjct: 394 VFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI----GN 449

Query: 330 LG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
           +    +A +WGALL  CRI+  + +    + KL  +   +   + L  ++Y E     + 
Sbjct: 450 MEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDV 509

Query: 389 NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
            ++R  + E G++K  PG S I ++     F A D  H+ + E+
Sbjct: 510 AEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEV 553


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  258 bits (658), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 140/419 (33%), Positives = 220/419 (52%), Gaps = 35/419 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ ML    EP+++T+  ++KAC     L N+GM +H  +VK G G D FV S+L     
Sbjct: 429 FVSMLRSTMEPDDFTYGSVVKACAGQQAL-NYGMEIHGRIVKSGMGLDWFVGSAL----- 482

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     VD YGK G    A ++ +++ E+  VSW++I++ 
Sbjct: 483 --------------------------VDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISG 516

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +S     +     F QM E+G+ P+     +VL  CA++  I  G  +H+   + +L  +
Sbjct: 517 FSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSD 576

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V +A+ +VDMYSKCG++  +  +FE    +D   W+AMI   A +G  +++++LF+ M  
Sbjct: 577 VYIASTLVDMYSKCGNMQDSRLMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQL 636

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +P  T F++VL  C H   V  GL+ F+ M + YG++P +EHY+C+VDLL R+  V 
Sbjct: 637 LNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVN 696

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA K IE         D  +W  LLS C++ G +EV  + +  L ++   D S +VL  N
Sbjct: 697 EALKLIESMH---FEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLAN 753

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           +Y   G   E  K+R ++    +KK+PGCS IEV   V  FL GD  H ++ EIY   H
Sbjct: 754 VYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTH 812



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 139/256 (54%), Gaps = 1/256 (0%)

Query: 31  YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFD 90
           +TF  +++ C  L  L N G   HA ++   F    +V + L++FY     M  A  +FD
Sbjct: 7   FTFSHILQKCSNLKAL-NPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFD 65

Query: 91  KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL 150
           + P RDV++W TM+ GY ++G+   A+ LF+ MPER+ VSW+++++ Y      ++ + +
Sbjct: 66  RMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210
           F +M+ + +  + +    VL AC+ +     GL VH  A +   E +V+  +A+VDMYSK
Sbjct: 126 FVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSK 185

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
           C  +  A  +F  +  ++   W+A+I+G   N    + L+LF  M+K G   +++T+ +V
Sbjct: 186 CKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASV 245

Query: 271 LTTCTHAKMVRDGLNL 286
             +C      + G  L
Sbjct: 246 FRSCAGLSAFKLGTQL 261



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 159/346 (45%), Gaps = 41/346 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM--FVHAHVV 58
           ++  Y+     + S+  ++ M  +    +  TF  ++KAC     +E++G+   VH   +
Sbjct: 109 LLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKAC---SGIEDYGLGLQVHCLAI 165

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF                               + DVVT + +VD Y K    + A  
Sbjct: 166 QMGF-------------------------------ENDVVTGSALVDMYSKCKKLDGAFR 194

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F +MPERN V WSA++A Y +   F E L LF+ M +VGM  ++S   SV  +CA L A
Sbjct: 195 IFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSA 254

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
              G  +H +A +     + I+ TA +DMY+KC  +  A  VF  + N    ++NA+I G
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVG 314

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A      K+LE+F  + ++     E +    LT C+  K   +G+ L   ++   G+  
Sbjct: 315 YARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQL-HGLAVKCGLGF 373

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +     ++D+  + G + EA    ++    +   DA  W A+++A
Sbjct: 374 NICVANTILDMYGKCGALVEACTIFDD----MERRDAVSWNAIIAA 415



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 170/380 (44%), Gaps = 65/380 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q +     +  + DML +G   +  T+  + ++C  L   +  G  +H H +K 
Sbjct: 210 VIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFK-LGTQLHGHALKS 268

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  D  +              GTA                  +D Y K     +A ++F
Sbjct: 269 DFAYDSII--------------GTAT-----------------LDMYAKCDRMSDAWKVF 297

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +P     S++AI+  Y+R     + L +F+ +Q   +  +E  L   LTAC+ +    
Sbjct: 298 NTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHL 357

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ +H  A +  L  N+ +A  ++DMY KCG +  A ++F+ +  +DA +WNA+I+   
Sbjct: 358 EGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHE 417

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFEN 289
            N +  K+L LF  M++S  +P + T+ +V+  C            H ++V+ G+ L   
Sbjct: 418 QNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWF 477

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACR 346
           + +             +VD+  + GM+ EAEK    +EEK           W +++S   
Sbjct: 478 VGSA------------LVDMYGKCGMLMEAEKIHDRLEEKT-------TVSWNSIISGFS 518

Query: 347 IYGKIEVGNRVWRKLAEMGI 366
              + E   R + ++ EMG+
Sbjct: 519 SQKQSENAQRYFSQMLEMGV 538



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 138/280 (49%), Gaps = 5/280 (1%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++    T++D YGK G    A  +F+ M  R+AVSW+AI+AA+ +  +  + LSLF  M 
Sbjct: 374 NICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
              M+P++    SV+ ACA   A+  G+ +H    +  +  +  + +A+VDMY KCG + 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  + + +  K   +WN++ISG +    ++ +   F +M++ G  P   T+  VL  C 
Sbjct: 494 EAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCA 553

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           +   +  G  +   +  +  +   +   + +VD+ ++ G ++++    E+        D 
Sbjct: 554 NMATIELGKQIHAQILKL-NLHSDVYIASTLVDMYSKCGNMQDSRLMFEKT----PKRDY 608

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
             W A++ A   +G  E   +++ ++  + +    T  +S
Sbjct: 609 VTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFIS 648


>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
          Length = 617

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 148/425 (34%), Positives = 232/425 (54%), Gaps = 41/425 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +A + K ++  +  M + GFEP+  T   ++ AC  LG L              
Sbjct: 200 MISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRT------------ 247

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                      LLE  ++  K+G +  L  K           ++  YGK GD ++AR +F
Sbjct: 248 ---------GRLLEEMAITKKIGLSTFLGSK-----------LISMYGKCGDLDSARRVF 287

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +++ V+W+A++  YS+     E   LF +M++ G+ P+   L +VL+AC  +GA+ 
Sbjct: 288 NQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 347

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  + ++A    L+ N+ +AT +VDMY KCG V  AL VFE +  K+   WNAMI+  A
Sbjct: 348 LGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYA 407

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G AK++L LFDRM      P++ TF+ VL+ C HA +V  G   F  MS+++G+ P++
Sbjct: 408 HQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKI 464

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY  ++DLL+RAGM++EA +F+E      G  D  +  A+L AC     + +  +  R 
Sbjct: 465 EHYTNIIDLLSRAGMLDEAWEFMER---FPGKPDEIMLAAILGACHKRKDVAIREKAMRM 521

Query: 361 LAEMG-ITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           L EM    +   +V+S N+  +   WD E+ K+R L+ + G+ K PGCS IE+ G + EF
Sbjct: 522 LMEMKEAKNAGNYVISSNVLADMKMWD-ESAKMRALMRDRGVVKTPGCSWIEIEGELMEF 580

Query: 419 LAGDN 423
           LAG +
Sbjct: 581 LAGSD 585



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 161/326 (49%), Gaps = 17/326 (5%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           EPN+Y+F  +I+            + ++  +   G   D F  + +    + + ++G  R
Sbjct: 89  EPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGR 148

Query: 87  A----LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           +    LF    +RDV    +++  Y K G    AR+LF+++ ER+ VSW+++++ YS   
Sbjct: 149 SVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAG 208

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             K+ + LFR+M+E G +P+E  LVS+L AC+HLG +  G  +   A    +  +  L +
Sbjct: 209 YAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGS 268

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
            ++ MY KCG + SA  VF  +  KD  AW AMI+  + NG + ++ +LF  M K+G  P
Sbjct: 269 KLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSP 328

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEE 318
              T   VL+ C     +  G  +       +  E  L+H   V    VD+  + G VEE
Sbjct: 329 DAGTLSTVLSACGSVGALELGKQI-----ETHASELSLQHNIYVATGLVDMYGKCGRVEE 383

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSA 344
           A +  E     +   +   W A+++A
Sbjct: 384 ALRVFE----AMPVKNEATWNAMITA 405


>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
 gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 148/425 (34%), Positives = 232/425 (54%), Gaps = 41/425 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +A + K ++  +  M + GFEP+  T   ++ AC  LG L              
Sbjct: 204 MISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRT------------ 251

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                      LLE  ++  K+G +  L  K           ++  YGK GD ++AR +F
Sbjct: 252 ---------GRLLEEMAITKKIGLSTFLGSK-----------LISMYGKCGDLDSARRVF 291

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +++ V+W+A++  YS+     E   LF +M++ G+ P+   L +VL+AC  +GA+ 
Sbjct: 292 NQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 351

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  + ++A    L+ N+ +AT +VDMY KCG V  AL VFE +  K+   WNAMI+  A
Sbjct: 352 LGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYA 411

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G AK++L LFDRM      P++ TF+ VL+ C HA +V  G   F  MS+++G+ P++
Sbjct: 412 HQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKI 468

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY  ++DLL+RAGM++EA +F+E      G  D  +  A+L AC     + +  +  R 
Sbjct: 469 EHYTNIIDLLSRAGMLDEAWEFMER---FPGKPDEIMLAAILGACHKRKDVAIREKAMRM 525

Query: 361 LAEMG-ITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           L EM    +   +V+S N+  +   WD E+ K+R L+ + G+ K PGCS IE+ G + EF
Sbjct: 526 LMEMKEAKNAGNYVISSNVLADMKMWD-ESAKMRALMRDRGVVKTPGCSWIEIEGELMEF 584

Query: 419 LAGDN 423
           LAG +
Sbjct: 585 LAGSD 589



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 161/326 (49%), Gaps = 17/326 (5%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           EPN+Y+F  +I+            + ++  +   G   D F  + +    + + ++G  R
Sbjct: 93  EPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGR 152

Query: 87  A----LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           +    LF    +RDV    +++  Y K G    AR+LF+++ ER+ VSW+++++ YS   
Sbjct: 153 SVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAG 212

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
             K+ + LFR+M+E G +P+E  LVS+L AC+HLG +  G  +   A    +  +  L +
Sbjct: 213 YAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGS 272

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
            ++ MY KCG + SA  VF  +  KD  AW AMI+  + NG + ++ +LF  M K+G  P
Sbjct: 273 KLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSP 332

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEE 318
              T   VL+ C     +  G  +       +  E  L+H   V    VD+  + G VEE
Sbjct: 333 DAGTLSTVLSACGSVGALELGKQI-----ETHASELSLQHNIYVATGLVDMYGKCGRVEE 387

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSA 344
           A +  E     +   +   W A+++A
Sbjct: 388 ALRVFE----AMPVKNEATWNAMITA 409


>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
          Length = 632

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 144/432 (33%), Positives = 245/432 (56%), Gaps = 19/432 (4%)

Query: 1   MIRGYMQANFPKLS--VFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           ++ GY +A     +  +FC + ++  G  PN  T    + A   +G L  FG+ +H +V 
Sbjct: 215 LVDGYARAGLADEAWRLFCRMVVVG-GMRPNAVTLVAAVSAIGQMGLLA-FGIMLHKYVT 272

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + G      + ++L++ +     +  AR +FD    +DV +WT+MV+ Y K GD E+A +
Sbjct: 273 EGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQ 332

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF+ MP RN VSWS ++AAYS+++  +E + LFR+M   G+ P ++ LVSVL+ACA LG 
Sbjct: 333 LFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPIDATLVSVLSACAQLGC 392

Query: 179 ITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +  G W++ +Y     +   V L  A++DM++KCG V  A  +F+ ++ ++  +WN MI 
Sbjct: 393 LDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLFDEMAERNVVSWNTMIM 452

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A++G +++++ LF+++      P + TF+ +L +C+H+ +V +G   F+ M   Y +E
Sbjct: 453 AHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLVSEGRRYFKEMEMFYRIE 512

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHYAC++DLL + G++EEA    E   G     D   WGALL+ACR++G +E+G  V
Sbjct: 513 PRVEHYACMIDLLGKVGLLEEA---FEVARGMPMEADEAGWGALLNACRMHGNVEIGACV 569

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             KL E+  +D   +VL   IY     WD +   +R  + + G           ++G+  
Sbjct: 570 ADKLVELDPSDSGIYVLMSQIYASKNKWD-QVKMLRMTMRDRGTV---------LDGIAT 619

Query: 417 EFLAGDNRHAQA 428
           E L G+    Q+
Sbjct: 620 ELLLGEPDPLQS 631



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 177/400 (44%), Gaps = 75/400 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVIL-----GPLENFGMFVHA 55
           M+RG+++A  P  ++  +  ++      +  TF   +KA         G   + G  +H 
Sbjct: 107 MMRGFLRARLPARALGLFRRVVRDRLPADARTFVFAVKAAAAAAESEHGGTPSGGEAIHC 166

Query: 56  HVVKFGF-GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE 114
             +K GF GE   V ++L+ FY+    +  A  +FD+ P+RDVV+WTT+VDGY + G  +
Sbjct: 167 AALKCGFVGESVLVGNALVHFYANHKSLDDAGKVFDEMPERDVVSWTTLVDGYARAGLAD 226

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
            A  LF +M                              +   GM+PN   LV+ ++A  
Sbjct: 227 EAWRLFCRM------------------------------VVVGGMRPNAVTLVAAVSAIG 256

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            +G +  G+ +H Y     + ++V L  A+VDM+ KCG V  A  VF+G+  KD  +W +
Sbjct: 257 QMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWTS 316

Query: 235 MISGVAMNGD-------------------------------AKKSLELFDRMVKSGTQPT 263
           M++  A  GD                                ++++ LF  M+ +G  P 
Sbjct: 317 MVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDPI 376

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + T V+VL+ C     +  G  ++EN      +   +     ++D+ A+ G V EA K  
Sbjct: 377 DATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKLF 436

Query: 324 EEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKL 361
           +E        + NV  W  ++ A  ++G+ E   R++ +L
Sbjct: 437 DEM------AERNVVSWNTMIMAHAVHGQSEEAIRLFEQL 470


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 233/439 (53%), Gaps = 39/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI   +    P  +V  Y  M   G  P+  T   ++ AC  +G L+  G+ +H   +K 
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLD-LGIRLHEIAIKT 429

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V +SL++ YS                               K    +NA E+F
Sbjct: 430 GLVSHVIVSNSLIDMYS-------------------------------KCKCVDNALEVF 458

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  +N VSW++++      +   E L  FRQM+E  MKPN   L+SVL+ACA +GA+ 
Sbjct: 459 RNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALM 517

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +H++A R  +  +  L  A++DMY +CG    AL+ F     KD  AWN +++G A
Sbjct: 518 RGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYA 576

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G AK ++ELFD+M++    P E TF+++L  C+ + MV +GL  F  M   Y + P L
Sbjct: 577 QQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNL 636

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HYACVVD+L RAG +++A  FI++        DA +WGALL+ACRI+  +E+G    ++
Sbjct: 637 KHYACVVDILGRAGQLDDAYDFIQDMP---IRPDAAIWGALLNACRIHRNVELGEIAAKR 693

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + E        ++L  N+Y   G WD + +KVR L+ E G+   PGCS +E+ G V  FL
Sbjct: 694 VFEKDNKSVGYYILLCNLYAGCGNWD-KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFL 752

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           +GDN H+Q+ EI  V+  F
Sbjct: 753 SGDNSHSQSKEINGVLDGF 771



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 161/350 (46%), Gaps = 37/350 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY +A     ++  Y  ML     PN YTFP ++K C  +  +   G  +HAHV++F
Sbjct: 169 LVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIAR-GKEIHAHVIRF 227

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  V ++L+  Y                                K GD  NAR LF
Sbjct: 228 GFESDVDVGNALITMYV-------------------------------KCGDISNARMLF 256

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMP+R+ +SW+A+++ Y       E L LF  M+E+ + P+   + +V +AC  L    
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y  +     ++ +  +++ MYS  G +  A +VF  + +KD  +W AMI+ + 
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +    K++E +  M   G  P E T V+VL+ C     +  G+ L E ++   G+   +
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSHV 435

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                ++D+ ++   V+ A     E    + G +   W +L+   RI  +
Sbjct: 436 IVSNSLIDMYSKCKCVDNA----LEVFRNISGKNVVSWTSLILGLRINNR 481



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 176/381 (46%), Gaps = 69/381 (18%)

Query: 1   MIRGYMQ--ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY +       L +F    M ++  +P+  T   +  AC +L   E  G  VH +VV
Sbjct: 270 MISGYFENGGGLEGLELFSM--MRELSVDPDLITMTTVASACELLDN-ERLGRGVHGYVV 326

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K  FG D  + +SL++ YS                                +G  E A  
Sbjct: 327 KSEFGGDISMNNSLIQMYS-------------------------------SLGRLEEAET 355

Query: 119 LFEKMPERNAVSWSAIMAAY-SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +F +M  ++ VSW+A++A+  S    FK V   ++ M+  G+ P+E  LVSVL+ACA +G
Sbjct: 356 VFSRMESKDVVSWTAMIASLVSHKLPFKAV-ETYKMMELEGILPDEITLVSVLSACACIG 414

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G+ +H  A +  L  +VI++ +++DMYSKC  V +AL VF  IS K+  +W ++I 
Sbjct: 415 HLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNL 286
           G+ +N  + ++L LF R +K   +P   T ++VL+ C            HA  +R G+  
Sbjct: 475 GLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGF 533

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGM-VEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
                   G  P       ++D+  R G  V    +F  +K       D   W  LL+  
Sbjct: 534 -------DGFLPN-----AILDMYVRCGRKVPALNQFNSQK------KDVTAWNILLTGY 575

Query: 346 RIYGKIEVGNRVWRKLAEMGI 366
              G+ ++   ++ K+ E+ I
Sbjct: 576 AQQGQAKLAVELFDKMLELEI 596



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%)

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           + G+  +A  +F KM ER+  SW+ ++  Y++   F E L+L+ +M    ++PN     S
Sbjct: 144 RFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPS 203

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL  CA +  I +G  +H++  R+  E +V +  A++ MY KCG + +A  +F+ +  +D
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRD 263

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             +WNAMISG   NG   + LELF  M +    P   T   V + C
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 5/201 (2%)

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           + ++ +     M E+ ++  E   +++L  C    A  +G  V+           V L  
Sbjct: 77  NLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGN 136

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++ M+ + G++  A  VF  +S +D  +WN ++ G A  G   ++L L+ RM+ +  +P
Sbjct: 137 ALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRP 196

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
              TF +VL TC     +  G  +  ++   +G E  ++    ++ +  + G +  A   
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 323 IEEKMGGLGGGDANVWGALLS 343
            ++    +   D   W A++S
Sbjct: 256 FDK----MPKRDRISWNAMIS 272


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 233/439 (53%), Gaps = 39/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI   +    P  +V  Y  M   G  P+  T   ++ AC  +G L+  G+ +H   +K 
Sbjct: 371 MIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLD-LGIRLHEIAIKT 429

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V +SL++ YS                               K    +NA E+F
Sbjct: 430 GLVSHVIVSNSLIDMYS-------------------------------KCKCVDNALEVF 458

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +  +N VSW++++      +   E L  FRQM+E  MKPN   L+SVL+ACA +GA+ 
Sbjct: 459 RNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKE-SMKPNSVTLISVLSACARIGALM 517

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +H++A R  +  +  L  A++DMY +CG    AL+ F     KD  AWN +++G A
Sbjct: 518 RGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYA 576

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G AK ++ELFD+M++    P E TF+++L  C+ + MV +GL  F  M   Y + P L
Sbjct: 577 QQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNL 636

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HYACVVD+L RAG +++A  FI++        DA +WGALL+ACRI+  +E+G    ++
Sbjct: 637 KHYACVVDILGRAGQLDDAYDFIQDMP---IRPDAAIWGALLNACRIHRNVELGEIAAKR 693

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + E        ++L  N+Y   G WD + +KVR L+ E G+   PGCS +E+ G V  FL
Sbjct: 694 VFEKDNKSVGYYILLCNLYAGCGNWD-KVSKVRSLMRERGLSADPGCSWVEIKGKVHAFL 752

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           +GDN H+Q+ EI  V+  F
Sbjct: 753 SGDNSHSQSKEINGVLDGF 771



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 161/350 (46%), Gaps = 37/350 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY +A     ++  Y  ML     PN YTFP ++K C  +  +   G  +HAHV++F
Sbjct: 169 LVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAGVSDIAR-GKEIHAHVIRF 227

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  V ++L+  Y                                K GD  NAR LF
Sbjct: 228 GFESDVDVGNALITMYV-------------------------------KCGDISNARMLF 256

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +KMP+R+ +SW+A+++ Y       E L LF  M+E+ + P+   + +V +AC  L    
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y  +     ++ +  +++ MYS  G +  A +VF  + +KD  +W AMI+ + 
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +    K++E +  M   G  P E T V+VL+ C     +  G+ L E ++   G+   +
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE-IAIKTGLVSHV 435

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                ++D+ ++   V+ A     E    + G +   W +L+   RI  +
Sbjct: 436 IVSNSLIDMYSKCKCVDNA----LEVFRNISGKNVVSWTSLILGLRINNR 481



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 176/381 (46%), Gaps = 69/381 (18%)

Query: 1   MIRGYMQ--ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI GY +       L +F    M ++  +P+  T   +  AC +L   E  G  VH +VV
Sbjct: 270 MISGYFENGGGLEGLELFSM--MRELSVDPDLITMTTVASACELLDN-ERLGRGVHGYVV 326

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K  FG D  + +SL++ YS                                +G  E A  
Sbjct: 327 KSEFGGDISMNNSLIQMYS-------------------------------SLGRLEEAET 355

Query: 119 LFEKMPERNAVSWSAIMAAY-SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           +F +M  ++ VSW+A++A+  S    FK V   ++ M+  G+ P+E  LVSVL+ACA +G
Sbjct: 356 VFSRMESKDVVSWTAMIASLVSHKLPFKAV-ETYKMMELEGILPDEITLVSVLSACACIG 414

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G+ +H  A +  L  +VI++ +++DMYSKC  V +AL VF  IS K+  +W ++I 
Sbjct: 415 HLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLIL 474

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNL 286
           G+ +N  + ++L LF R +K   +P   T ++VL+ C            HA  +R G+  
Sbjct: 475 GLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGF 533

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGM-VEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
                   G  P       ++D+  R G  V    +F  +K       D   W  LL+  
Sbjct: 534 -------DGFLPN-----AILDMYVRCGRKVPALNQFNSQK------KDVTAWNILLTGY 575

Query: 346 RIYGKIEVGNRVWRKLAEMGI 366
              G+ ++   ++ K+ E+ I
Sbjct: 576 AQQGQAKLAVELFDKMLELEI 596



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%)

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           + G+  +A  +F KM ER+  SW+ ++  Y++   F E L+L+ +M    ++PN     S
Sbjct: 144 RFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPS 203

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL  CA +  I +G  +H++  R+  E +V +  A++ MY KCG + +A  +F+ +  +D
Sbjct: 204 VLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRD 263

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             +WNAMISG   NG   + LELF  M +    P   T   V + C
Sbjct: 264 RISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 90/201 (44%), Gaps = 5/201 (2%)

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           + ++ +     M E+ ++  E   +++L  C    A  +G  V+           V L  
Sbjct: 77  NLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGN 136

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++ M+ + G++  A  VF  +S +D  +WN ++ G A  G   ++L L+ RM+ +  +P
Sbjct: 137 ALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRP 196

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
              TF +VL TC     +  G  +  ++   +G E  ++    ++ +  + G +  A   
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHV-IRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 323 IEEKMGGLGGGDANVWGALLS 343
            ++    +   D   W A++S
Sbjct: 256 FDK----MPKRDRISWNAMIS 272


>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Vitis vinifera]
          Length = 538

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/427 (34%), Positives = 243/427 (56%), Gaps = 14/427 (3%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           +++ +  ML +  +PN ++F  +I +   L  L N G  +HA  +K G   + FV S+++
Sbjct: 95  AIYFFSRMLALNIKPNQFSFGTVIPSSTALQDL-NSGRQLHACAIKMGLESNVFVGSAVV 153

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           +FY+ +  +  A+  F+ + + +VV++TT++ GY K   F++A  LF KMPERN VSW+A
Sbjct: 154 DFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNA 213

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           +++ YS++   +E ++LF  M   G  PNE      ++A A++ A+  G   H  A ++ 
Sbjct: 214 MISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFL 273

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            + +V +  ++V  Y+KCG +  +L VF  +  K+  +WNA+I G A +G   +++  F+
Sbjct: 274 GKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFE 333

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL---EHYACVVDLL 310
           +M  +G +P   T + +L  C H+ +V  G + F N + V   EP L   EH+AC+VDLL
Sbjct: 334 KMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYF-NKARVE--EPGLLTPEHHACMVDLL 390

Query: 311 ARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +R+G  +EAEKF+ E   + G+G      W ALL  CRI+  +E+G    RK+  +   D
Sbjct: 391 SRSGRFKEAEKFLHELPFVPGIG-----FWKALLGGCRIHSNMELGELAARKILALDPED 445

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
            S++V+  N +  AG     + +RK + E  MK  PG S IE+   V  F+ GD  H Q 
Sbjct: 446 VSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRNHDQH 505

Query: 429 GEIYRVI 435
            EIY+V+
Sbjct: 506 DEIYQVL 512



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 50/254 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q  + + +V  ++ ML  G  PN  TFP  I A   +  L   G   H   VKF
Sbjct: 214 MISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAAL-GMGRSFHGSAVKF 272

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D F+ +SL+ FY+    M  +  +F+  P +++V+W  ++ GY   G    A   F
Sbjct: 273 LGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFF 332

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           EK                               MQ+ G++PN   L+ +L AC H G + 
Sbjct: 333 EK-------------------------------MQDTGLRPNSVTLLGLLLACNHSGLVD 361

Query: 181 QGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSA------LSVFEGISNKDAG 230
           +G   +SY  +  +E+  +L       +VD+ S+ G    A      L    GI     G
Sbjct: 362 KG---YSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPFVPGI-----G 413

Query: 231 AWNAMISGVAMNGD 244
            W A++ G  ++ +
Sbjct: 414 FWKALLGGCRIHSN 427



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 31/201 (15%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +V  Y       +A +LF+++P  + VS +A +  ++R    +E +  F +M  + +KPN
Sbjct: 51  IVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPN 110

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH------- 215
           +    +V+ +   L  +  G  +H+ A +  LE NV + +AVVD Y+K   ++       
Sbjct: 111 QFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFE 170

Query: 216 ------------------------SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
                                    AL++F  +  ++  +WNAMISG +  G  ++++ L
Sbjct: 171 DTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNL 230

Query: 252 FDRMVKSGTQPTETTFVAVLT 272
           F  M++ GT P E TF   ++
Sbjct: 231 FVVMLREGTLPNERTFPCAIS 251


>gi|125574942|gb|EAZ16226.1| hypothetical protein OsJ_31678 [Oryza sativa Japonica Group]
          Length = 387

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 136/360 (37%), Positives = 216/360 (60%), Gaps = 11/360 (3%)

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           G AR LFD+ P  + V+W  ++DGY K  D   AR +F +MP+R+ VSWSA++    +  
Sbjct: 9   GLARRLFDEIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCG 68

Query: 143 DFKEVLSLFRQMQEV-----GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           + +E L++F  M+       G++ N+  +VSVL ACAHLG + +G  +H Y + +    N
Sbjct: 69  EHREALAVFEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLN 128

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           + LAT++VDMY+KCG +  AL VF+ +   N D   WNA+I G+A++G +++SL++F +M
Sbjct: 129 IRLATSLVDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKM 188

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
             +G  P E T++++L+ C H  +V +  + F ++ A  G+ P +EHYAC+VD+L RAG 
Sbjct: 189 EHAGVVPDEITYLSLLSACVHGGLVDEAWSFFRSLEA-QGLRPHVEHYACLVDVLGRAGR 247

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
           +EEA   ++           +V GALL+AC ++G +E+G  V R+L  +       ++  
Sbjct: 248 LEEAYGVVKSMPMK---PSVSVLGALLNACHLHGWVELGEAVGRQLVHLQPDHDGRYIGL 304

Query: 376 YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            NIY  A    EA K RK++ E G+KK PG S I+V   +  F+A D  H  + EIY ++
Sbjct: 305 SNIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDVGRGICRFIAQDKTHPGSAEIYALL 364


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 232/416 (55%), Gaps = 39/416 (9%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P+++TFP ++KAC  L      G+ +H+ + K GF  D +V + L+ FY        
Sbjct: 82  GVSPDHFTFPFVLKACARLQT----GLDLHSLLFKLGFDSDVYVQNGLIHFY-------- 129

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                                  G  G  + A ++FE+MPER+ VSWS+++A +++    
Sbjct: 130 -----------------------GCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFG 166

Query: 145 KEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            E L+LF++MQ VG +KP+E  ++SV++A + LG +  G W+  +  R  LE  V L TA
Sbjct: 167 YEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTA 226

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +VDM+S+CG +  ++ VF+ +  ++   W A+I+G+A++G + ++L +F  M   G QP 
Sbjct: 227 LVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPD 286

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TF  VL  C+H  +V +G ++FE++   YG+EP  EHY C+VDLL RAG++ EA KF+
Sbjct: 287 HVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFV 346

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +   G     ++ +W  LL AC  +  IE+  +V  K+ E+       +VL  N+Y   G
Sbjct: 347 D---GMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVG 403

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
              E   VR  + E  + KKPGCS+I VN ++ EF+AGDN H Q   I   + S +
Sbjct: 404 RWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMI 459


>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/427 (34%), Positives = 243/427 (56%), Gaps = 14/427 (3%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           +++ +  ML +  +PN ++F  +I +   L  L N G  +HA  +K G   + FV S+++
Sbjct: 376 AIYFFSRMLALNIKPNQFSFGTVIPSSTALQDL-NSGRQLHACAIKMGLESNVFVGSAVV 434

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           +FY+ +  +  A+  F+ + + +VV++TT++ GY K   F++A  LF KMPERN VSW+A
Sbjct: 435 DFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNA 494

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           +++ YS++   +E ++LF  M   G  PNE      ++A A++ A+  G   H  A ++ 
Sbjct: 495 MISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKFL 554

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            + +V +  ++V  Y+KCG +  +L VF  +  K+  +WNA+I G A +G   +++  F+
Sbjct: 555 GKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFE 614

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL---EHYACVVDLL 310
           +M  +G +P   T + +L  C H+ +V  G + F N + V   EP L   EH+AC+VDLL
Sbjct: 615 KMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYF-NKARVE--EPGLLTPEHHACMVDLL 671

Query: 311 ARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +R+G  +EAEKF+ E   + G+G      W ALL  CRI+  +E+G    RK+  +   D
Sbjct: 672 SRSGRFKEAEKFLHELPFVPGIG-----FWKALLGGCRIHSNMELGELAARKILALDPED 726

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
            S++V+  N +  AG     + +RK + E  MK  PG S IE+   V  F+ GD  H Q 
Sbjct: 727 VSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRNHDQH 786

Query: 429 GEIYRVI 435
            EIY+V+
Sbjct: 787 DEIYQVL 793



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 50/254 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q  + + +V  ++ ML  G  PN  TFP  I A   +  L   G   H   VKF
Sbjct: 495 MISGYSQMGYNEEAVNLFVVMLREGTLPNERTFPCAISAVANIAAL-GMGRSFHGSAVKF 553

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D F+ +SL+ FY+    M  +  +F+  P +++V+W  ++ GY   G    A   F
Sbjct: 554 LGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFF 613

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           EK                               MQ+ G++PN   L+ +L AC H G + 
Sbjct: 614 EK-------------------------------MQDTGLRPNSVTLLGLLLACNHSGLVD 642

Query: 181 QGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSA------LSVFEGISNKDAG 230
           +G   +SY  +  +E+  +L       +VD+ S+ G    A      L    GI     G
Sbjct: 643 KG---YSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPFVPGI-----G 694

Query: 231 AWNAMISGVAMNGD 244
            W A++ G  ++ +
Sbjct: 695 FWKALLGGCRIHSN 708



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 31/201 (15%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +V  Y       +A +LF+++P  + VS +A +  ++R    +E +  F +M  + +KPN
Sbjct: 332 IVCSYSASKALWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPN 391

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH------- 215
           +    +V+ +   L  +  G  +H+ A +  LE NV + +AVVD Y+K   ++       
Sbjct: 392 QFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFE 451

Query: 216 ------------------------SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
                                    AL++F  +  ++  +WNAMISG +  G  ++++ L
Sbjct: 452 DTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVNL 511

Query: 252 FDRMVKSGTQPTETTFVAVLT 272
           F  M++ GT P E TF   ++
Sbjct: 512 FVVMLREGTLPNERTFPCAIS 532


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 135/394 (34%), Positives = 222/394 (56%), Gaps = 10/394 (2%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMVDGYGKMG 111
           HA ++KFG+G  P +++SL+  Y+    +  A  L D+ P    D++T   ++    K+G
Sbjct: 43  HAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVG 102

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           +F+ A+ +F KM  R+ V+W++++    R   F+E L  FR+M    ++P+     SV+ 
Sbjct: 103 EFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVIN 162

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            CA LG+      VH       ++ N IL++A++D+YSKCG +++A  VF  I + D   
Sbjct: 163 GCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSV 222

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN+MI+G+A++G A  ++ +F +M      P   TF+ +LT C+H  +V  G   F+ M 
Sbjct: 223 WNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMR 282

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
             Y ++PQLEHY  +VDLL RAG+VEEA   I+         D  +W ALLSACR +   
Sbjct: 283 RHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIK---AMPMEPDIVIWRALLSACRNFKNP 339

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIE 410
           E+G     K++ +   D+   +L  N+Y     WD  A +VR+++   G++K  G S +E
Sbjct: 340 ELGEVAIAKISHLNSGDY---ILLSNMYCSLEKWD-SAERVREMMKRDGVRKNRGRSWVE 395

Query: 411 VNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           + GV+ +F AGD  H + G IY+V+   ++ + L
Sbjct: 396 LGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKL 429



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 34/223 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + +ML+   EP+ +TF  +I  C  LG   +    VH  +++     +  + S+L++ YS
Sbjct: 142 FREMLNSNVEPDGFTFASVINGCARLGS-SHHAELVHGLMIEKKIQLNFILSSALIDLYS 200

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++ TA+ +F+     DV  W +M++G    G   +A                     
Sbjct: 201 KCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDA--------------------- 239

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEK 196
                     + +F QM+   + P+    + +LTAC+H G + QG       +R Y ++ 
Sbjct: 240 ----------IGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQP 289

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            +    A+VD+  + G V  A ++ + +    D   W A++S 
Sbjct: 290 QLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSA 332


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 135/394 (34%), Positives = 222/394 (56%), Gaps = 10/394 (2%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMVDGYGKMG 111
           HA ++KFG+G  P +++SL+  Y+    +  A  L D+ P    D++T   ++    K+G
Sbjct: 82  HAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLMKVG 141

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           +F+ A+ +F KM  R+ V+W++++    R   F+E L  FR+M    ++P+     SV+ 
Sbjct: 142 EFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVIN 201

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
            CA LG+      VH       ++ N IL++A++D+YSKCG +++A  VF  I + D   
Sbjct: 202 GCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSV 261

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN+MI+G+A++G A  ++ +F +M      P   TF+ +LT C+H  +V  G   F+ M 
Sbjct: 262 WNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMR 321

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351
             Y ++PQLEHY  +VDLL RAG+VEEA   I+         D  +W ALLSACR +   
Sbjct: 322 RHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIK---AMPMEPDIVIWRALLSACRNFKNP 378

Query: 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKE-AGWDMEANKVRKLISETGMKKKPGCSVIE 410
           E+G     K++ +   D+   +L  N+Y     WD  A +VR+++   G++K  G S +E
Sbjct: 379 ELGEVAIAKISHLNSGDY---ILLSNMYCSLEKWD-SAERVREMMKRDGVRKNRGRSWVE 434

Query: 411 VNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           + GV+ +F AGD  H + G IY+V+   ++ + L
Sbjct: 435 LGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKL 468



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 34/223 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + +ML+   EP+ +TF  +I  C  LG   +    VH  +++     +  + S+L++ YS
Sbjct: 181 FREMLNSNVEPDGFTFASVINGCARLGS-SHHAELVHGLMIEKKIQLNFILSSALIDLYS 239

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++ TA+ +F+     DV  W +M++G    G   +A                     
Sbjct: 240 KCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDA--------------------- 278

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEK 196
                     + +F QM+   + P+    + +LTAC+H G + QG       +R Y ++ 
Sbjct: 279 ----------IGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQP 328

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
            +    A+VD+  + G V  A ++ + +    D   W A++S 
Sbjct: 329 QLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSA 371


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 239/448 (53%), Gaps = 32/448 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVIL-GPLENFGMFVHAHVV 58
           MI GY Q+   + ++  +++M    G   N  T   ++ A V   G     G  +H +V+
Sbjct: 289 MIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEG--IHGYVI 346

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   + ++ ++L++ YS +  + T++ +FD   DRD+V+W T++  Y   G   +A  
Sbjct: 347 KRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALL 406

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           L  +M                RI +       +   ++V  KPN   L++VL  CA L A
Sbjct: 407 LLHEM---------------QRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSA 451

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + +G  +H+YA R  L   V + +A+VDMY+KCG ++ A  VF+ +  ++   WN +I  
Sbjct: 452 LAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMA 511

Query: 239 VAMNGDAKKSLELFDRMVKSG-----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
             M+G  K+SLELF+ MV  G      +PTE TF+A+  +C+H+ MV +GL+LF  M   
Sbjct: 512 YGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNE 571

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+EP  +HYAC+VDL+ RAG VEEA   +     G        W +LL ACRIY  IE+
Sbjct: 572 HGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGF--DKVGAWSSLLGACRIYHNIEI 629

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVN 412
           G      L ++     S +VL  NIY  AG WD   N +R+ +   G+KK+PGCS IE  
Sbjct: 630 GEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMN-LRRRMKAMGVKKEPGCSWIEYG 688

Query: 413 GVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
             V +FLAGD  H Q+ +    +H FL+
Sbjct: 689 DEVHKFLAGDLSHPQSEK----LHDFLE 712



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 149/330 (45%), Gaps = 46/330 (13%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           M+  GF P+N+ FP ++KA   +  L   G  +HAHV KFG+G           F S   
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQEL-YLGKQIHAHVFKFGYGS----------FSS--- 46

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
                           V    T+V+ YGK G   +A ++F+++ ER+ VSW++I++A  R
Sbjct: 47  ----------------VTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCR 90

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK---N 197
             +++  +  FR M   G +P+   LVS+  AC++L     GLW+          K    
Sbjct: 91  FEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRK-RDGLWLGKQIHGCCFRKGHWR 149

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
                A++ MY+K G +  A S+     ++D   WN+MIS  + N    ++L     MV 
Sbjct: 150 TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVL 209

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
            G +P   TF +VL  C+H  ++R G  +         V       + +VD+    G VE
Sbjct: 210 EGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVE 269

Query: 318 EA----EKFIEEKMGGLGGGDANVWGALLS 343
                 +  ++ K+G        +W A+++
Sbjct: 270 SGRLVFDSVLDRKIG--------LWNAMIA 291



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 184/418 (44%), Gaps = 57/418 (13%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLV 79
           ML  GFEP+++T   +  AC  L   +   +    H   F  G    F  ++L+  Y+ +
Sbjct: 104 MLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKL 163

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
            ++  A++L     DRD+VTW +M+                               +++S
Sbjct: 164 GRLDDAKSLLVLFEDRDLVTWNSMI-------------------------------SSFS 192

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLEKNV 198
           +   F E L   R M   G+KP+     SVL AC+HL  +  G  +H+YA R   + +N 
Sbjct: 193 QNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENS 252

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM-VK 257
            + +A+VDMY  CG V S   VF+ + ++  G WNAMI+G A +   +K+L LF  M   
Sbjct: 253 FVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAA 312

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY---GVEPQLEHYACVVDLLARAG 314
           +G     TT  +++     A +  +G++  E +       G+E        ++D+ +R G
Sbjct: 313 AGLYSNATTMSSIVP----AYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMG 368

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG-ITDFSTHV 373
            ++ +++  +     +   D   W  ++++  I G+    +     L EM  I + ST+ 
Sbjct: 369 DIKTSKRIFD----SMEDRDIVSWNTIITSYVICGR---SSDALLLLHEMQRIEEKSTYD 421

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
             YN  K+  +        K  S T M   PGC+ +      +E  A   R+  A ++
Sbjct: 422 GDYNDEKQVPF--------KPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQV 471



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 156/372 (41%), Gaps = 63/372 (16%)

Query: 1   MIRGYMQ-ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI  + Q   F +  +F  L +L+ G +P+  TF  ++ AC  L  L   G  +HA+ ++
Sbjct: 187 MISSFSQNERFMEALMFLRLMVLE-GVKPDGVTFASVLPACSHLDLLRT-GKEIHAYALR 244

Query: 60  FG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
                E+ FV S+L++ Y    ++ + R +FD   DR +  W  M+ GY +    E A  
Sbjct: 245 TDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALM 304

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           LF +M                                  G+  N + + S++ A      
Sbjct: 305 LFIEME------------------------------AAAGLYSNATTMSSIVPAYVRCEG 334

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           I++   +H Y  +  LE N  L  A++DMYS+ G + ++  +F+ + ++D  +WN +I+ 
Sbjct: 335 ISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITS 394

Query: 239 VAMNGDAKKSLELF---DRMVKSGT-------------QPTETTFVAVLTTCTHAKMVRD 282
             + G +  +L L     R+ +  T             +P   T + VL  C     +  
Sbjct: 395 YVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAK 454

Query: 283 GLNL----FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
           G  +      N+ A      Q+   + +VD+ A+ G +  A +  ++    +   +   W
Sbjct: 455 GKEIHAYAIRNLLA-----SQVTVGSALVDMYAKCGCLNLARRVFDQ----MPIRNVITW 505

Query: 339 GALLSACRIYGK 350
             ++ A  ++GK
Sbjct: 506 NVIIMAYGMHGK 517


>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 233/436 (53%), Gaps = 37/436 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+ A  P  ++  +  M       ++ T    + AC     +   G   HA +V  
Sbjct: 167 IIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACA-RTCMMKVGKLCHALLVTN 225

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + ++ SSL+  Y+                               K G  E+AR +F
Sbjct: 226 GFEINCYMGSSLISMYA-------------------------------KCGQVEDARRIF 254

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MP+RNAV W+++++ Y+++   KE + LFR MQ  G+K +++ + +V+++C  +GA+ 
Sbjct: 255 DGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALD 314

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G +VH+Y   + L K++ +  +++DMYSKCG +  A  +F G+  +D  +W  +I G A
Sbjct: 315 LGRYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGMVKRDNFSWT-VIMGFA 373

Query: 241 MNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
            NG + ++L+LF +M +  G  P E TF+ VLT+C+H  +V  G   F  MS++YG+ P+
Sbjct: 374 ANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQGYRHFHRMSSIYGIAPR 433

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL RA ++ EAE+FI+E        DA +W +LL ACR  G++ +   V  
Sbjct: 434 IEHYGCMVDLLGRAKLLAEAEQFIKEMP---IAPDAVMWRSLLFACRTCGEVGLAEYVAE 490

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           ++  +        VL   +Y      ++ANKVR  I      K+PGCS IEV+G V EF 
Sbjct: 491 RIQVLEPNKCGGDVLLSTVYATTSRWVDANKVRTGIYSGRKTKQPGCSFIEVDGCVHEFF 550

Query: 420 AGDNRHAQAGEIYRVI 435
           AGD  H +   IY  +
Sbjct: 551 AGDESHFETEAIYSTL 566



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 132/296 (44%), Gaps = 32/296 (10%)

Query: 25  GFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           G+ P +NY+    +     + P    G  +HA  VK G   D FV+++L+  YS      
Sbjct: 87  GYMPIDNYSLSAALSTAARM-PSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPS 145

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           TAR++ D +P                                 + VSW+ I+A Y     
Sbjct: 146 TARSVLDSAPKG-----------------------------ASDTVSWNTIIAGYIHAGL 176

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             + L  F QM +  +  ++  L++ L ACA    +  G   H+       E N  + ++
Sbjct: 177 PNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSS 236

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           ++ MY+KCG V  A  +F+G+ +++A  W +MISG    G +K++++LF  M  +G +  
Sbjct: 237 LISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVD 296

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           + T   V+++C     +  G         ++G+   +     ++D+ ++ G +++A
Sbjct: 297 DATISTVVSSCGQMGALDLG-RYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKA 351



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 94/210 (44%), Gaps = 7/210 (3%)

Query: 159 MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218
           M  +   L + L+  A + ++  G  +H+ + +  L  +  +   +++MYS C +  +A 
Sbjct: 89  MPIDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTAR 148

Query: 219 SVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           SV +       D  +WN +I+G    G   K+L+ F +M K      + T +  L  C  
Sbjct: 149 SVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACAR 208

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
             M++ G  L   +    G E      + ++ + A+ G VE+A +  +    G+   +A 
Sbjct: 209 TCMMKVG-KLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFD----GMPDRNAV 263

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            W +++S     G+ +   +++R +   G+
Sbjct: 264 CWTSMISGYTQLGQSKEAIKLFRDMQIAGV 293


>gi|302142959|emb|CBI20254.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 235/437 (53%), Gaps = 46/437 (10%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR  +Q   P  ++ CYLDM+     P ++TF  L+KAC ++  L  FG  VH H+ K+
Sbjct: 81  MIRALVQCYHPVQALDCYLDMVQAQVSPTSFTFSSLVKACSLVSEL-GFGEAVHGHIWKY 139

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV ++L++FY    K+  AR +FD+  +RDV  WTTM+  + + GD  +AR+LF
Sbjct: 140 GFDSHVFVQTALVDFYGNAGKIVEARRVFDEMSERDVFAWTTMISVHARTGDMSSARQLF 199

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP RN  SW+A++  YSR+ + +    LF QM      PN                  
Sbjct: 200 DEMPVRNTASWNAMIDGYSRLRNVESAELLFSQM------PN------------------ 235

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
                          +++I  T ++  YS+  H+  +L VF  +  K+   WN++I G+A
Sbjct: 236 ---------------RDIISWTTMIACYSQNKHLDKSLVVFFKLRKKNLFCWNSIIEGLA 280

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G A+++L +F RM +   +P   TF++VL  CTHA +V +G   F +MS  + + P++
Sbjct: 281 VHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEI 340

Query: 301 EHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           EHY C+VDLL +AG++E+A + +   +M      ++ +WGALL  C+++  +++      
Sbjct: 341 EHYGCMVDLLGKAGLLEDALELVRSMRM----EPNSVIWGALLGGCKLHRNLKIAQVAVN 396

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK-KPGCSVIEVNGVVEEF 418
           +   +   +   + L  N+Y E     E   +R  + E G++K  PG S IE++  + +F
Sbjct: 397 ESKVLEPNNSGYYTLLVNMYAEVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQF 456

Query: 419 LAGDNRHAQAGEIYRVI 435
            A D  H  + EIY ++
Sbjct: 457 AASDKSHLASDEIYTLL 473


>gi|147809483|emb|CAN60147.1| hypothetical protein VITISV_041924 [Vitis vinifera]
          Length = 480

 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/367 (39%), Positives = 211/367 (57%), Gaps = 12/367 (3%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G  +H HV+K G   D F+ +SL+  Y+ + K+  A  +F++     VV+   M+D  GK
Sbjct: 22  GTPLHTHVIKRGLSHDLFIQTSLVVLYARLCKVSDACXVFEEISRPCVVSSNAMLDALGK 81

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM------QEVGMKPNE 163
            GD  +A  LFE MPER+ VSW++I+  + R   F+E +  F +M      +   +KPNE
Sbjct: 82  NGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVKPNE 141

Query: 164 SGLVSVLTACAHL---GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           +  VSVL++C +L   GA+ QG  +H Y  R  +E  V + TA++ +Y K G + + + +
Sbjct: 142 ATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGCLENXMKI 201

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F G+  K    WNAMIS +A NG  K++L+LF++M   G  P E TFVAV+T C  +K V
Sbjct: 202 FNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMXGLCPDEVTFVAVITACARSKFV 261

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
             GL  F++M   +GV P++ HY CVVDLL RAG++EEA +FI+         DA V GA
Sbjct: 262 VLGLGFFQSMWCDFGVVPRMXHYGCVVDLLGRAGLLEEATEFIKXMP---FEPDATVLGA 318

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
           LL AC+++G IE+GN V R+L E        +V   NIY        A   RK ++E G+
Sbjct: 319 LLGACKVHGAIELGNEVGRRLLEXQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMTEAGI 378

Query: 401 KKKPGCS 407
            K P  S
Sbjct: 379 SKIPAYS 385



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 51/231 (22%)

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           + QG  +H++  +  L  ++ + T++V +Y++   V  A  VFE IS     + NAM+  
Sbjct: 19  LLQGTPLHTHVIKRGLSHDLFIQTSLVVLYARLCKVSDACXVFEEISRPCVVSSNAMLDA 78

Query: 239 VAMNGDAKKSLELFDRM------------------------------------VKSG-TQ 261
           +  NGD   +L LF+ M                                    V+S   +
Sbjct: 79  LGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRSCLVK 138

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG------VEPQLEHYACVVDLLARAGM 315
           P E TFV+VL++CT+     DG+        ++G      VE  +     ++ L  + G 
Sbjct: 139 PNEATFVSVLSSCTNL----DGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGC 194

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +E   K       G+       W A++S+    G+ +    ++ K+   G+
Sbjct: 195 LENXMKIFN----GMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMXGL 241


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 145/409 (35%), Positives = 239/409 (58%), Gaps = 8/409 (1%)

Query: 36  LIKACVILGPLENFGMFVHAH--VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP 93
           +I   V+   +E+ GM   A   +VK G G    V ++++  Y     +   R +F +  
Sbjct: 125 MISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMN 184

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           +R+VV+W+T+++G  K    EN R +F++MPERN V W+ ++A Y      +E   L  +
Sbjct: 185 ERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDE 244

Query: 154 M-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNVILATAVVDMYSKC 211
           M     +  N   L S+L+ACA  G +  G WVH YA K    E ++++ TA+VDMY+KC
Sbjct: 245 MVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKC 304

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G +  A  VF+ +  ++  AWNAM+ G+AM+G  K  L++F +M++   +P + TF+AVL
Sbjct: 305 GPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVL 363

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
           + C+H+ +V  G + F ++ + YG  P++EHYAC+VD+L RAG +EEA   I+ KM    
Sbjct: 364 SACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIK-KMPMCP 422

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391
             +  V G+LL +C  +GK+++G R+ ++L +M   +   HVL  N+Y   G   +AN +
Sbjct: 423 --NEVVLGSLLGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSL 480

Query: 392 RKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           R+++   G++K PG S I V G + +F AGD  H    EIY  +++ ++
Sbjct: 481 RQILKSKGIRKVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQ 529



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 130/333 (39%), Gaps = 40/333 (12%)

Query: 107 YGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGMKPNE 163
           Y   G   +AR LF ++P   ++   W+ ++ +  +  +   E    F++M++ G+  ++
Sbjct: 63  YASCGVTSSARHLFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDD 122

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF-- 221
             ++SV   C  +  +  G        +  L   V +  A+++MY KCG V     VF  
Sbjct: 123 VAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCE 182

Query: 222 -------------------EGISN----------KDAGAWNAMISGVAMNGDAKKSLELF 252
                              EG+ N          ++   W  MI+G   NG +++   L 
Sbjct: 183 MNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLL 242

Query: 253 DRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
           D MV +        T  ++L+ C  +  V  G  +        G E  +     +VD+ A
Sbjct: 243 DEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYA 302

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           + G ++ A K  +     L   +   W A+L    ++G+ +    ++ K+ E    D  T
Sbjct: 303 KCGPIDMAFKVFKY----LPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAKPDDLT 358

Query: 372 HVLSYNIYKEAGW-DMEANKVRKLISETGMKKK 403
            +   +    +G  D   +  R L SE G   K
Sbjct: 359 FMAVLSACSHSGLVDQGYHYFRSLESEYGTTPK 391


>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 226/421 (53%), Gaps = 51/421 (12%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  M   G  PN ++F  L  AC  L   +  G  +H H VK GFG D F +++L++ Y+
Sbjct: 70  YTQMCLQGCSPNEHSFTFLFSACASLSSHQQ-GRMLHTHFVKSGFGCDVFALTALVDMYA 128

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
            +  +  AR  FD+   RDV TW +M+ GY + GD E A ELF  MP RN  SW+A+++ 
Sbjct: 129 KLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISG 188

Query: 138 YSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
           Y++   + + LS+F  M +E  M+PNE  L SVL ACA+LGA+  G  +  YA+     K
Sbjct: 189 YAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFK 248

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           N+ ++ A+++MY++CG +  A  VFE I   ++  +WN+MI G+A++G   +++ELF +M
Sbjct: 249 NLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKM 308

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           ++ G  P + TFV VL  CTH  MV +G + FE+M   + + P+LEHY C+VDLL     
Sbjct: 309 LREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGP--- 365

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
                                  GAL                     E+  ++   +V+ 
Sbjct: 366 -----------------------GALF--------------------ELEPSNPGNYVIL 382

Query: 376 YNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
            NIY  AG WD  A ++RKL+    + K  G S IE  G + +F+  D  H+++ EIY +
Sbjct: 383 SNIYATAGRWDGVA-RLRKLMKGGKITKAAGYSFIEEGGHIHKFIVEDRSHSRSDEIYAL 441

Query: 435 I 435
           +
Sbjct: 442 L 442



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 99/206 (48%), Gaps = 4/206 (1%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A +LF+ +P+     ++ ++ AYS      +  SL+ QM   G  PNE     + +ACA 
Sbjct: 35  AHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACAS 94

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           L +  QG  +H++  +     +V   TA+VDMY+K G +  A   F+ ++ +D   WN+M
Sbjct: 95  LSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSM 154

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G A  GD + +LELF  M         T++ A+++           L++F  M     
Sbjct: 155 IAGYARCGDLEGALELFRLMPARNV----TSWTAMISGYAQNGQYAKALSMFLMMEEETE 210

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEK 321
           + P     A V+   A  G +E  E+
Sbjct: 211 MRPNEVTLASVLPACANLGALEVGER 236


>gi|413923547|gb|AFW63479.1| hypothetical protein ZEAMMB73_625657 [Zea mays]
          Length = 490

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/422 (34%), Positives = 231/422 (54%), Gaps = 34/422 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y+DML+ G  P++YTFP  +KAC  L  L+     + AH+VK GF  D  V +SL+ FY 
Sbjct: 2   YVDMLEAGVRPDSYTFPFALKACAQLAALQEGRQQLQAHIVKLGFQHDEHVQNSLISFYG 61

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              +   AR  FD+                              +  ER A SWSA++AA
Sbjct: 62  KCVEPAMARLAFDRV-----------------------------EAEERTAASWSALLAA 92

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y++   + E L  F  M   G +P+ES  VS L+ACAHLGA   G  +H    R     N
Sbjct: 93  YTKAGLWGECLESFGAMVLDGWRPDESSTVSALSACAHLGAFDVGRSLHCALLRNTARLN 152

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
            I+ T++VDMY+KCG +  A +VF+ + +K+A  ++AM+SG+A++GD +K+L++FD MV+
Sbjct: 153 TIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWTYSAMLSGLALHGDGRKALQVFDAMVR 212

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
               P   T+V VL  C+ A ++ DGL  F+ M   + V P  ++Y C+VDL+ARAG ++
Sbjct: 213 ERHAPDAATYVGVLNACSRAGLLEDGLRCFDRMRLEHNVAPNAQYYGCMVDLMARAGRLD 272

Query: 318 EAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +A   I    G +  G  +  W +LL+ACRI+G +++  R  ++L  +G  +   +V+  
Sbjct: 273 DARALI----GSMSTGPTDTAWRSLLNACRIHGDLDLAERALQELRRLGAANAGDYVIVA 328

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           +++  A     A ++R    + G+ + PG S +EV G +  F++ D  H +  +IY ++H
Sbjct: 329 DMHARAKDWAAAAQLRTEAVDWGLAQSPGVSAVEVRGELHRFVSQDRSHPRTSDIYEMLH 388

Query: 437 SF 438
             
Sbjct: 389 QM 390



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 101/244 (41%), Gaps = 21/244 (8%)

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEKNVILATAVVDMY 208
           ++  M E G++P+       L ACA L A+ +G   + ++  +   + +  +  +++  Y
Sbjct: 1   MYVDMLEAGVRPDSYTFPFALKACAQLAALQEGRQQLQAHIVKLGFQHDEHVQNSLISFY 60

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN--GDAKKSLELFDRMVKSGTQPTETT 266
            KC     A   F+ +  ++  A +      A    G   + LE F  MV  G +P E++
Sbjct: 61  GKCVEPAMARLAFDRVEAEERTAASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESS 120

Query: 267 FVAVLTTCTHAKMVRDGLN----LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            V+ L+ C H      G +    L  N + +  +         +VD+ A+ G +E+A   
Sbjct: 121 TVSALSACAHLGAFDVGRSLHCALLRNTARLNTI-----MQTSLVDMYAKCGSIEKAAAV 175

Query: 323 IEEKMGGLGGGDANVW--GALLSACRIYGKIEVGNRVWRKLA-EMGITDFSTHVLSYNIY 379
            +         D N W   A+LS   ++G      +V+  +  E    D +T+V   N  
Sbjct: 176 FDAM------DDKNAWTYSAMLSGLALHGDGRKALQVFDAMVRERHAPDAATYVGVLNAC 229

Query: 380 KEAG 383
             AG
Sbjct: 230 SRAG 233


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/402 (35%), Positives = 229/402 (56%), Gaps = 11/402 (2%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           LI+  + +G +E+      A +V  G  E +P   + +++ Y++  +M  ++ LF+K P 
Sbjct: 304 LIEGLISMGRIED------AELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPC 357

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           R + +  TM+  Y + G+ + A ELFE+   E++ V+W+++++ Y      +E L L+  
Sbjct: 358 RTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYIT 417

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M  + ++  +S   ++  AC+ LG++ QG  +H++  +   E NV + T+++DMYSKCG 
Sbjct: 418 MHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 477

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A + F  I + +  AW A+I+G A +G   +++ LFDRM++ G  P   TFV VL+ 
Sbjct: 478 IMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSA 537

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C+ A +V +G+ +F +M   Y V P LEHYACVVDLL R+G + EAE+FI +KM      
Sbjct: 538 CSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFI-KKMP--LEA 594

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393
           D  VWGALLSAC  +  +EVG RV  K+        S++V+  NIY   G   E   VRK
Sbjct: 595 DGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRK 654

Query: 394 LISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           ++    +KK PGCS IE+N  +  F   D  H     IY  +
Sbjct: 655 ILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYATL 696



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 167/368 (45%), Gaps = 15/368 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y +      ++F    M     + +  TF  ++  C  L  L + G  +H  V+K 
Sbjct: 69  MISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRD-GKLIHCLVLKS 127

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V S+LL FY+   ++G AR +FD    R+ V W+ M+ GY      ++A  +F
Sbjct: 128 GSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVF 187

Query: 121 EKMPERNAVSWSAIMAAYSRISD-FKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGA 178
            KMP R+ V+W+ +++ +S+  D   + L +FR M   G   PNE     V+ AC  LG 
Sbjct: 188 VKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGI 247

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           ++ G  VH    +  LE +  +  A+V+ Y +C  +  AL V +G+ N    A N++I G
Sbjct: 248 LSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEG 307

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +   G  + +  +F+ M    T+    ++  ++        + D   LFE M        
Sbjct: 308 LISMGRIEDAELVFNGM----TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPC-----R 358

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +     ++ + +R G +++A +  EE        D   W +++S     G+ E   +++
Sbjct: 359 TIFSSNTMISVYSRNGEIDKALELFEETK---NEKDPVTWNSMISGYIHSGQPEEALKLY 415

Query: 359 RKLAEMGI 366
             +  + I
Sbjct: 416 ITMHRLSI 423



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 155/359 (43%), Gaps = 44/359 (12%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++++    +  Y K    + AR+LF++MP+R  VSW+ ++++YS+   F E L L   M 
Sbjct: 31  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 90

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHS--------------------YAKRYHL- 194
              MK +ES   SVL+ CA L  +  G  +H                     YA  + + 
Sbjct: 91  RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIG 150

Query: 195 ----------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
                      +N +L + ++  Y  C  +  ALSVF  +  +D  AW  +ISG + NGD
Sbjct: 151 EARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGD 210

Query: 245 -AKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
              K+LE+F  M++SG T P E TF  V+  C    ++  G  +   +    G+E     
Sbjct: 211 GCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTV-HGLLMKCGLEYDPSI 269

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
              +V+       +++A +  +    G+     N   +L+      G+IE    V+  + 
Sbjct: 270 GGALVEFYCECEAIDDALRVCK----GVVNPCLNALNSLIEGLISMGRIEDAELVFNGMT 325

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANK--VRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           EM    ++  +  Y +    G  M+ +K    K+   T        SV   NG +++ L
Sbjct: 326 EMNPVSYNLMIKGYAV----GGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKAL 380



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 34/270 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+ +  P+ ++  Y+ M  +  +    TF  L  AC  LG L   G  +HAH++K 
Sbjct: 398 MISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQ-GQLLHAHLIKT 456

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  + +V +SL++ YS    +  A+  F      +V  WT +++G+   G    A  LF
Sbjct: 457 PFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLF 516

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M E+                               G+ PN +  V VL+AC+  G + 
Sbjct: 517 DRMIEQ-------------------------------GLAPNGATFVGVLSACSRAGLVN 545

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G+ + HS  + Y +   +     VVD+  + GH+  A    + +    D   W A++S 
Sbjct: 546 EGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 605

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                D +    + ++M     +P  +  +
Sbjct: 606 CWFWMDLEVGERVAEKMFSFDPKPISSYVI 635


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/433 (33%), Positives = 235/433 (54%), Gaps = 36/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHVVK 59
           +I GY Q + P+ ++    +ML +G +PN +T   L+KA   +G  +   G  +H   ++
Sbjct: 87  LITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLR 146

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           +G+  + +V  ++L+ Y+  H +                               E A+ +
Sbjct: 147 YGYDSNVYVSCAILDMYARCHHL-------------------------------EEAQLI 175

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ M  +N VSW+A++A Y+R     +   LF  M    +KP      SVL ACA +G++
Sbjct: 176 FDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSL 235

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
            QG WVH+   ++  +    +   ++DMY+K G +  A  VF+ ++ +D  +WN+M++G 
Sbjct: 236 EQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGY 295

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           + +G  K +L+ F+ M+++   P + TF+ VLT C+HA ++ +G + F+ M   Y VEPQ
Sbjct: 296 SQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQ 354

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           + HY  +VDLL RAG ++ A +FI E         A VWGALL ACR++  +E+G     
Sbjct: 355 ISHYVTMVDLLGRAGHLDRAIQFISEMP---IKPTAAVWGALLGACRMHKNMELGGYAAE 411

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            + E+      THVL YNIY  AG   +A KVRK++ E+G+KK+P CS +E+   V  F+
Sbjct: 412 CIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFV 471

Query: 420 AGDNRHAQAGEIY 432
           A D+ H Q  EI+
Sbjct: 472 ADDDAHPQRREIH 484



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 156/294 (53%), Gaps = 32/294 (10%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D+V   T+++ Y K GD   AR+LF++M  R+ V+W+A++  YS+    ++ L L  +M 
Sbjct: 49  DLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEML 108

Query: 156 EVGMKPNESGLVSVLTACAHLGA--ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
            +G+KPN+  L S+L A + +G+  + QG  +H    RY  + NV ++ A++DMY++C H
Sbjct: 109 RIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHH 168

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  +F+ + +K+  +WNA+I+G A  G   K+  LF  M++   +PT  T+ +VL  
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228

Query: 274 C-----------THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           C            HA M++ G    E + A  G          ++D+ A++G +E+A+K 
Sbjct: 229 CASMGSLEQGKWVHALMIKWG----EKLVAFVG--------NTLLDMYAKSGSIEDAKKV 276

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
            +     L   D   W ++L+    Y +  +G    ++  EM  T  + + +++
Sbjct: 277 FDR----LAKRDVVSWNSMLTG---YSQHGLGKVALQRFEEMLRTRIAPNDITF 323



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 79/155 (50%), Gaps = 3/155 (1%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           ++L  C HL  + +G  +H+         ++++   ++++Y+KCG +  A  +F+ +S++
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT--HAKMVRDGLN 285
           D   W A+I+G + +   + +L L   M++ G +P + T  ++L   +   +  V  G  
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           L   +   YG +  +     ++D+ AR   +EEA+
Sbjct: 140 L-HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQ 173


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 140/420 (33%), Positives = 229/420 (54%), Gaps = 35/420 (8%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +ML  G EP+++T+  ++KAC  L  LE +G  VH   +K G G D FV S         
Sbjct: 429 EMLRYGMEPDDFTYGSVLKACAGLQSLE-YGSVVHGKAIKSGLGLDAFVSS--------- 478

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
                                 T+VD Y K G    A++L +++  +  VSW++I++ +S
Sbjct: 479 ----------------------TVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFS 516

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
                +E    F +M ++G+KP+     +VL  CA+L  I  G  +H    +  +  +  
Sbjct: 517 LNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEY 576

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           +++ +VDMY+KCG++  +L +FE     D  +WNAMI G A++G   ++LE+F+RM ++ 
Sbjct: 577 ISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQAN 636

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             P   TFVAVL  C+H  ++ DG   F  M++ Y +EPQLEH+AC+VD+L R+   +EA
Sbjct: 637 VVPNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEA 696

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
            KFI          DA +W  LLS C+I   +EV       +  +   D S ++L  N+Y
Sbjct: 697 LKFIRSMP---LEADAVIWKTLLSICKIRQDVEVAETAASNVLRLDPDDSSVYILLSNVY 753

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
            E+G  ++ ++ R+L+ +  +KK+PGCS IEV   +  FLAGD  H ++ E+Y ++++ +
Sbjct: 754 AESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEMHGFLAGDKVHPRSREVYEMLNNLI 813



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 1/244 (0%)

Query: 32  TFPPLIKACVILG-PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFD 90
           TF  L + C   G      G   HA ++  GF    FV + LL+ Y+       AR +FD
Sbjct: 4   TFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFD 63

Query: 91  KSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL 150
             P RD V+W TM+  Y   GD   A  LF  MP+ + VSW+A+++ Y +   F++ + L
Sbjct: 64  VMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGL 123

Query: 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210
             +M   G+ P+ + L  +L AC  L  +  G+ +H+ A +  LE +V   +A+VDMY K
Sbjct: 124 SVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGK 183

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
           C  +  AL  F G+  +++ +W A I+G   N    + LELF +M + G   ++  + +V
Sbjct: 184 CRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASV 243

Query: 271 LTTC 274
             +C
Sbjct: 244 FRSC 247



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 158/355 (44%), Gaps = 32/355 (9%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           E N+ ++   I  CV        G+ +   + + G G      +S+    + +  + TAR
Sbjct: 199 ERNSVSWGAAIAGCV-QNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 87  AL----FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
            L           D V  T +VD Y K     +AR  F  +P     + +A+M    R  
Sbjct: 258 QLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
              E L LF+ M   G+  +   L  V +ACA +    QGL VH  A +   + +V +  
Sbjct: 318 LGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRN 377

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++D+Y KC  +  A  VF+ +  +D+ +WNA+I+ +  N   + ++   + M++ G +P
Sbjct: 378 AILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEP 437

Query: 263 TETTFVAVLTTCT-----------HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
            + T+ +VL  C            H K ++ GL L   +S+             VVD+  
Sbjct: 438 DDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSST------------VVDMYC 485

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           + GM+ EA+K  +     +GG +   W +++S   +  + E   + + ++ ++G+
Sbjct: 486 KCGMITEAQKLHDR----IGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGV 536



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 41/346 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVV 58
           ++ GY Q    + SV   ++M   G  P+  T   L+KAC   G LE+   G+ +HA  V
Sbjct: 107 LLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKAC---GGLEDLALGVQIHAVAV 163

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G                                + DV   + +VD YGK    E+A  
Sbjct: 164 KTGL-------------------------------EMDVRAGSALVDMYGKCRSLEDALR 192

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
            F  M ERN+VSW A +A   +   +   L LF QMQ +G+  ++    SV  +CA +  
Sbjct: 193 FFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITC 252

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           ++    +H++A +     + ++ TA+VD+Y+K   +  A   F  + N    A NAM+ G
Sbjct: 253 LSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVG 312

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +   G   ++L+LF  M +SG      +   V + C   K    GL +   ++   G + 
Sbjct: 313 LVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQV-HCLAIKSGFDV 371

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +     ++DL  +   + EA    +E    +   D+  W A+++A
Sbjct: 372 DVCVRNAILDLYGKCKALVEAYLVFQE----MEQRDSVSWNAIIAA 413



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 107/190 (56%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D DV     ++D YGK      A  +F++M +R++VSW+AI+AA  +   +++ ++   +
Sbjct: 370 DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNE 429

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M   GM+P++    SVL ACA L ++  G  VH  A +  L  +  +++ VVDMY KCG 
Sbjct: 430 MLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGM 489

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A  + + I  ++  +WN++ISG ++N  ++++ + F  M+  G +P   T+  VL T
Sbjct: 490 ITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDT 549

Query: 274 CTHAKMVRDG 283
           C +   +  G
Sbjct: 550 CANLATIELG 559



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 34/231 (14%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           + +MLD+G +P+++T+  ++  C  L  +E  G  +H  ++K     D ++ S+L++ Y+
Sbjct: 528 FSEMLDIGVKPDHFTYATVLDTCANLATIE-LGKQIHGQIIKQEMLGDEYISSTLVDMYA 586

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
               M  +  +F+K+   D V+W  M+ GY   G    A E+FE+M + N V        
Sbjct: 587 KCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVV-------- 638

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEK 196
                                  PN +  V+VL AC+H+G +  G  + +    RY LE 
Sbjct: 639 -----------------------PNHATFVAVLRACSHVGLLDDGCRYFYLMTSRYKLEP 675

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAK 246
            +     +VD+  +      AL     +    DA  W  ++S   +  D +
Sbjct: 676 QLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVE 726



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 36/228 (15%)

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
           L A A   A+  G   H+            ++  ++ MY++CG    A  VF+ + ++D 
Sbjct: 11  LCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDT 70

Query: 230 GAWNAMISGVAMNGDAKKSLELFD-------------------------------RMVKS 258
            +WN M++  A  GD   +  LF                                 M + 
Sbjct: 71  VSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARR 130

Query: 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
           G  P  TT   +L  C   + +  G+ +   ++   G+E  +   + +VD+  +   +E+
Sbjct: 131 GVAPDRTTLAVLLKACGGLEDLALGVQI-HAVAVKTGLEMDVRAGSALVDMYGKCRSLED 189

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           A +F      G+G  ++  WGA ++ C    +   G  ++ ++  +G+
Sbjct: 190 ALRFFH----GMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGL 233


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 250/441 (56%), Gaps = 19/441 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG--PLEN--FGMFVHAH 56
           M   Y Q   PK ++  +  ML+ G  P++ T+   I +C  +G   L +    M    H
Sbjct: 229 MQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKH 288

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFEN 115
           +V      + FV ++LL+ ++    +  AR +FD+    R+ VTW  M+  Y ++G    
Sbjct: 289 IVL-----NSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSL 343

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACA 174
           ARELF+ MP+R+ VSW++++A Y++  +    + LF++M   + ++P+E  + SVL+AC 
Sbjct: 344 ARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACG 403

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           H+GA+    WV    +  +++  +    +++ MYSKCG V  A  +F+ +  +D  ++N 
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +ISG A NG  K++++L   M + G +P   T++ VLT C+HA ++ +G N+F+++ A  
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-- 521

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
              P ++HYAC+VDLL RAG ++EA+  I+        G   V+G+LL+A RI+ ++ +G
Sbjct: 522 ---PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAG---VYGSLLNASRIHKRVGLG 575

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL E+   +   +VL  NIY   G   +  +VR+++ + G+KK  G S +E  G 
Sbjct: 576 ELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQ 635

Query: 415 VEEFLAGDNRHAQAGEIYRVI 435
           V +F  GD  H Q+ +IY+++
Sbjct: 636 VHKFTVGDRSHEQSKDIYKLL 656



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 155/317 (48%), Gaps = 70/317 (22%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           +   P  + +  LIK     G L       HA+V+K G  +D F+ +++L+ Y+   ++ 
Sbjct: 94  LNLRPQPFVYIYLIKLAGKSGNL------FHAYVLKLGHIDDHFIRNAILDMYAKNGQVD 147

Query: 84  TARALFDKS-------------------------------PDRDVVTWTTMVDGYGKMGD 112
            AR LF++                                P R+++TWT+MV GY KMGD
Sbjct: 148 LARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGD 207

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            E+AR  F++MPER+ VSW+A+ +AY++    KE L+LF QM E G+ P+++  V  +++
Sbjct: 208 LESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISS 267

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV------------ 220
           C+ +G  T    +     + H+  N  + TA++DM++K G++  A ++            
Sbjct: 268 CSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVT 327

Query: 221 --------------------FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-G 259
                               F+ +  +D  +WN+MI+G A NG++  S+ELF  M+    
Sbjct: 328 WNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMD 387

Query: 260 TQPTETTFVAVLTTCTH 276
            QP E T  +VL+ C H
Sbjct: 388 IQPDEVTIASVLSACGH 404



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/373 (20%), Positives = 149/373 (39%), Gaps = 55/373 (14%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKM-GTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           H H+V        + VS LL   + +H       ++F  SP  D   ++ M+  Y +MG 
Sbjct: 21  HGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGA 80

Query: 113 FENARELFEKMPERNAVSW----------------------------------SAIMAAY 138
                 LF+     N                                      +AI+  Y
Sbjct: 81  HNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLGHIDDHFIRNAILDMY 140

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV 198
           ++        +LF QM E  +    +   S+++ C   G  T+ + + +        +N+
Sbjct: 141 AKNGQVDLARNLFEQMAERTL----ADWNSMISGCWKSGNETEAVVLFNMMP----ARNI 192

Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
           I  T++V  Y+K G + SA   F+ +  +   +WNAM S  A     K++L LF +M++ 
Sbjct: 193 ITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEE 252

Query: 259 GTQPTETTFVAVLTTCTH---AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
           G  P +TT+V  +++C+      +    L + +    V     +      ++D+ A+ G 
Sbjct: 253 GITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVK----TALLDMHAKFGN 308

Query: 316 VEEAEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           +E A    +E    LG   +A  W  ++SA    GK+ +   ++  + +  +  +++ + 
Sbjct: 309 LEIARNIFDE----LGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIA 364

Query: 375 SYNIYKEAGWDME 387
            Y    E+   +E
Sbjct: 365 GYAQNGESAMSIE 377



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 115/273 (42%), Gaps = 27/273 (9%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F   P  +A  +S ++  YSR+    +V+SLF+    + ++P     + ++      G 
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN 115

Query: 179 ITQGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +      H+Y  K  H++ + I   A++DMY+K G V  A ++FE ++ +    WN+MIS
Sbjct: 116 L-----FHAYVLKLGHIDDHFI-RNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMIS 169

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM--VRDGLNLFENMSAVYG 295
           G   +G+  +++ LF+ M      P             +AKM  +      F+ M     
Sbjct: 170 GCWKSGNETEAVVLFNMM------PARNIITWTSMVTGYAKMGDLESARRYFDEMP---- 219

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            E  +  +  +    A+    +EA     + +      D   W   +S+C   G   + +
Sbjct: 220 -ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLAD 278

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
            + R + +        H++  +  K A  DM A
Sbjct: 279 SILRMIDQ-------KHIVLNSFVKTALLDMHA 304


>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
          Length = 493

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 226/432 (52%), Gaps = 36/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++   P  ++  +  M       +  T   ++ AC   G ++  G   HA VV  
Sbjct: 79  IIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMK-VGSLCHALVVLN 137

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + ++ SSL+  Y+                               K G  E AR +F
Sbjct: 138 GFEINCYIGSSLVSMYA-------------------------------KCGMVEEARRVF 166

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPERN V W++++A  ++   FKE + LFR MQ  G+K +++ + +V+++C  +GA+ 
Sbjct: 167 NRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALD 226

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G ++H+Y   + L K + +  +++DMYSKCG V+ A  +F G++ +D   W  MI G A
Sbjct: 227 LGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFA 286

Query: 241 MNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           MNG   ++L+LF +M  +    P E  F+ VLT C+H  +V  G + F  MS VY + P+
Sbjct: 287 MNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPR 346

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL RA ++ EAE+FI++        D  VW +LL ACR  G++ +      
Sbjct: 347 IEHYGCMVDLLGRAKLLAEAEQFIKDMP---VAPDVVVWRSLLFACRASGQVGLAEYAAE 403

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           ++ ++       HVL  N+Y      ++ N VR  +  +   KKPGCS IEV+G + EF 
Sbjct: 404 RIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFF 463

Query: 420 AGDNRHAQAGEI 431
           AGD  H +   I
Sbjct: 464 AGDESHFETEAI 475



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 35/314 (11%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           +NY+    I A   + P  + G   HA  +K     D FV+++L+  YS  +   +AR +
Sbjct: 4   DNYSLNIAISAAARV-PSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLV 62

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
            D +P      W +                        + VSW+ I+A Y R     + L
Sbjct: 63  LDSAP-----RWAS------------------------DVVSWNTIIAGYIRGGMPNKAL 93

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
             F QM +  ++ +E  L++VL ACA  GA+  G   H+       E N  + +++V MY
Sbjct: 94  QSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMY 153

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG V  A  VF  +  ++   W +MI+G   +G  K++++LF  M  +G +  + T  
Sbjct: 154 AKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIA 213

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            V+++C     +  G  L       +G+  +L     ++D+ ++ G V +A +       
Sbjct: 214 TVVSSCGQMGALDLGRYLHAYCDG-HGLGKELSVKNSLIDMYSKCGDVNKAYQIFH---- 268

Query: 329 GLGGGDANVWGALL 342
           GL   D   W  ++
Sbjct: 269 GLTKRDVFTWTVMI 282


>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
          Length = 533

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/372 (36%), Positives = 218/372 (58%), Gaps = 12/372 (3%)

Query: 48  NFGMFVHAHVVKFGFGEDPFVV---------SSLLEFYSLVHKMGTARALFDKSPDRDVV 98
           N  +  HA +      E  FV          ++++  Y     + +AR +FD+ P RD  
Sbjct: 152 NSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGDVSSARRVFDQMPTRDST 211

Query: 99  TWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG 158
           +W+ ++ GY K G   +ARE+F++MP +N V+W+A++  Y++    KE L+LFR+M+  G
Sbjct: 212 SWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAG 271

Query: 159 MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218
           ++P+ + +V V++A + +G+     WV SY  +  +E+N  + TA+VDM++KCG+V  AL
Sbjct: 272 IEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAKCGNVDEAL 331

Query: 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278
           S F  I+  DA  + A+ISG+A +G AK +L++F+RM      P   TFV VLT C+HA 
Sbjct: 332 SAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAG 391

Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
           +V  GL+ +E M   YG+E + +HYACVVD+L RAG +EEA + ++    G   G     
Sbjct: 392 LVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPG---AL 448

Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398
           GALLSAC+ +G +E+   V  KL E+   +   +++  NIY E     EA ++R ++   
Sbjct: 449 GALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQWEEAERIRSVMRTR 508

Query: 399 GMKKKPGCSVIE 410
              K+PG S +E
Sbjct: 509 LPFKQPGSSWVE 520



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 122/303 (40%), Gaps = 52/303 (17%)

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           V ++L++ Y+    +  A          D V++ +++  + ++    +A  LF  MP R 
Sbjct: 119 VANALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRT 178

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
            VSW+A++  Y    D      +F QM        +S   SVL                 
Sbjct: 179 QVSWNAMVVVYVNAGDVSSARRVFDQMPT-----RDSTSWSVL----------------- 216

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
                            +  Y KCG + SA  VF+ +  K+  AW AMI+G A +G  K+
Sbjct: 217 -----------------IVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKE 259

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH----Y 303
           SL LF  M  +G +P   T V V++  +       G          Y  + ++E      
Sbjct: 260 SLALFREMEAAGIEPDAATMVGVISAASQI-----GSTELAGWVGSYVDKKRIERNDKVL 314

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
             +VD+ A+ G V+EA     E    +   DA  + AL+S    +G  ++  +V+ ++  
Sbjct: 315 TALVDMHAKCGNVDEALSAFRE----IAQPDAYPYTALISGLAAHGHAKLALQVFERMQA 370

Query: 364 MGI 366
             +
Sbjct: 371 QSV 373



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+  PK S+  + +M   G EP+  T   +I A   +G  E  G +V ++V K 
Sbjct: 247 MINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAG-WVGSYVDK- 304

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                         K  +R+    T +VD + K G+ + A   F
Sbjct: 305 ------------------------------KRIERNDKVLTALVDMHAKCGNVDEALSAF 334

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++ + +A  ++A+++  +     K  L +F +MQ   + P+    V VLTAC+H G + 
Sbjct: 335 REIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVD 394

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +GL +  +  K Y +E+       VVDM  + G +  A  + + +      GA  A++S 
Sbjct: 395 KGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSA 454

Query: 239 VAMNGD 244
              +G+
Sbjct: 455 CKTHGN 460


>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
 gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 581

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 226/432 (52%), Gaps = 36/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY++   P  ++  +  M       +  T   ++ AC   G ++  G   HA VV  
Sbjct: 167 IIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMK-VGSLCHALVVLN 225

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  + ++ SSL+  Y+                               K G  E AR +F
Sbjct: 226 GFEINCYIGSSLVSMYA-------------------------------KCGMVEEARRVF 254

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPERN V W++++A  ++   FKE + LFR MQ  G+K +++ + +V+++C  +GA+ 
Sbjct: 255 NRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALD 314

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G ++H+Y   + L K + +  +++DMYSKCG V+ A  +F G++ +D   W  MI G A
Sbjct: 315 LGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFA 374

Query: 241 MNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           MNG   ++L+LF +M  +    P E  F+ VLT C+H  +V  G + F  MS VY + P+
Sbjct: 375 MNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPR 434

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHY C+VDLL RA ++ EAE+FI++        D  VW +LL ACR  G++ +      
Sbjct: 435 IEHYGCMVDLLGRAKLLAEAEQFIKDMP---VAPDVVVWRSLLFACRASGQVGLAEYAAE 491

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           ++ ++       HVL  N+Y      ++ N VR  +  +   KKPGCS IEV+G + EF 
Sbjct: 492 RIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFF 551

Query: 420 AGDNRHAQAGEI 431
           AGD  H +   I
Sbjct: 552 AGDESHFETEAI 563



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 139/314 (44%), Gaps = 35/314 (11%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           +NY+    I A   + P  + G   HA  +K     D FV+++L+  YS  +   +AR +
Sbjct: 92  DNYSLNIAISAAARV-PSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLV 150

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
            D +P      W +                        + VSW+ I+A Y R     + L
Sbjct: 151 LDSAP-----RWAS------------------------DVVSWNTIIAGYIRGGMPNKAL 181

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
             F QM +  ++ +E  L++VL ACA  GA+  G   H+       E N  + +++V MY
Sbjct: 182 QSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMY 241

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG V  A  VF  +  ++   W +MI+G   +G  K++++LF  M  +G +  + T  
Sbjct: 242 AKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIA 301

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            V+++C     +  G  L       +G+  +L     ++D+ ++ G V +A +       
Sbjct: 302 TVVSSCGQMGALDLGRYLHAYCDG-HGLGKELSVKNSLIDMYSKCGDVNKAYQIFH---- 356

Query: 329 GLGGGDANVWGALL 342
           GL   D   W  ++
Sbjct: 357 GLTKRDVFTWTVMI 370


>gi|242041125|ref|XP_002467957.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
 gi|241921811|gb|EER94955.1| hypothetical protein SORBIDRAFT_01g037150 [Sorghum bicolor]
          Length = 650

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 148/399 (37%), Positives = 217/399 (54%), Gaps = 8/399 (2%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           L+VF   DM + G+  +      ++ AC     ++N G   H  VV+ G G    V ++L
Sbjct: 254 LAVFS--DMREEGWPVDEAVMVSVVAACAKSEVIQN-GEVCHGLVVRAGLGSRVNVQNAL 310

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           +  YS    +  AR LFD S   D  +W +M+ GY K G  E+A+ LF  MP+++ VSWS
Sbjct: 311 IHMYSSCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWS 370

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
           A++A   + +   E L++F  M+   +KP+E  LVSV++AC +L A+ QG  VH Y ++Y
Sbjct: 371 AMIAGCVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQY 430

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
                ++L T+++DMY KCG + +AL VF+ +  K    WNA+I G+AMNG   +SL++F
Sbjct: 431 QYNITIVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMF 490

Query: 253 DRMVKSGTQ-PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311
             M  SG   P+E TF  VL+ C H  +V +G   F+ M   Y + P + HY C+VDLL 
Sbjct: 491 SEMETSGIAVPSEITFTGVLSACRHGGLVEEGRQFFKLMQNKYQIIPNIRHYGCMVDLLG 550

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371
           RAG V EAE  I+         D   WGALL AC  +   EVG RV +KL ++       
Sbjct: 551 RAGYVREAEDLIQSMP---MSPDVPAWGALLGACWKHSDSEVGERVGKKLVKLDPHHDGF 607

Query: 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
             +  NIY   G       +R  + +  + K  GCSV+E
Sbjct: 608 QTMLSNIYASEGMWQCVKDLRGSMKQH-VAKVAGCSVVE 645



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 193/452 (42%), Gaps = 97/452 (21%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR  ++   P L   C+     M   P+ YT P L  AC   G     G  VH+H VK 
Sbjct: 80  LIRAALRQGLPHL---CFPLYASMPAAPDTYTHPLLAAACAARGDARE-GRQVHSHAVKH 135

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GFG++ ++ ++L+  YS    +  AR +FD  P  D V+W T++  Y + GD E A  +F
Sbjct: 136 GFGDNLYLRNALMHMYSACGCVAGARRVFDAGPVWDAVSWNTILATYVRDGDVEQAVGVF 195

Query: 121 EKMPERNAV-------------------------------SWSAIMAAYSRISDFKEVLS 149
            +MPER+A                                +W+A+++ + R   F E L+
Sbjct: 196 ARMPERSAAAVSSMVALFARTGMVEEARGVFDGAEHRDAFTWTAMISCFERNDLFVEALA 255

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           +F  M+E G   +E+ +VSV+ ACA    I  G   H    R  L   V +  A++ MYS
Sbjct: 256 VFSDMREEGWPVDEAVMVSVVAACAKSEVIQNGEVCHGLVVRAGLGSRVNVQNALIHMYS 315

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG---DAK-------------------- 246
            C  V +A  +F+   + D  +WN+MISG   NG   DAK                    
Sbjct: 316 SCLDVVAARRLFDSSESLDHFSWNSMISGYLKNGRVEDAKALFNVMPDKDNVSWSAMIAG 375

Query: 247 --------KSLELFDRMVKSGTQPTETTFVAVLTTCT------HAKMVRDGLNLFE-NMS 291
                   ++L +FD M     +P E T V+V++ CT        K+V + +  ++ N++
Sbjct: 376 CVQNNQSSEALTVFDNMRAHEIKPDEVTLVSVISACTNLCALEQGKLVHEYIRQYQYNIT 435

Query: 292 AVYG------------VEPQLEHY------------ACVVDLLARAGMVEEAEKFIEEKM 327
            V G            +E  LE +            A +V L     +    + F E + 
Sbjct: 436 IVLGTSLIDMYMKCGCMEAALEVFDMVEEKGTPCWNAVIVGLAMNGLVTRSLDMFSEMET 495

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            G+       +  +LSACR  G +E G + ++
Sbjct: 496 SGIAVPSEITFTGVLSACRHGGLVEEGRQFFK 527


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/441 (32%), Positives = 250/441 (56%), Gaps = 19/441 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG--PLEN--FGMFVHAH 56
           M   Y Q   PK ++  +  ML+ G  P++ T+   I +C  +G   L +    M    H
Sbjct: 229 MQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKH 288

Query: 57  VVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFEN 115
           +V      + FV ++LL+ ++    +  AR +FD+    R+ VTW  M+  Y ++G    
Sbjct: 289 IVL-----NSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSL 343

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACA 174
           ARELF+ MP+R+ VSW++++A Y++  +    + LF++M   + ++P+E  + SVL+AC 
Sbjct: 344 ARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACG 403

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
           H+GA+    WV    +  +++  +    +++ MYSKCG V  A  +F+ +  +D  ++N 
Sbjct: 404 HIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNT 463

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +ISG A NG  K++++L   M + G +P   T++ VLT C+HA ++ +G N+F+++ A  
Sbjct: 464 LISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-- 521

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
              P ++HYAC+VDLL RAG ++EA+  I+        G   V+G+LL+A RI+ ++ +G
Sbjct: 522 ---PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAG---VYGSLLNASRIHKRVGLG 575

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
                KL E+   +   +VL  NIY   G   +  +VR+++ + G+KK  G S +E  G 
Sbjct: 576 ELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQ 635

Query: 415 VEEFLAGDNRHAQAGEIYRVI 435
           V +F  GD  H Q+ +IY+++
Sbjct: 636 VHKFTVGDRSHEQSKDIYKLL 656



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 70/317 (22%)

Query: 24  MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83
           +   P  + +  LIK   + G   N  MF HA+V+K G  +D F+ +++L+ Y+   ++ 
Sbjct: 94  LNLRPQPFVYIYLIK---LAGKSGN--MF-HAYVLKLGHIDDHFIRNAILDMYAKNGQVD 147

Query: 84  TARALFDKS-------------------------------PDRDVVTWTTMVDGYGKMGD 112
            AR LF++                                P R+++TWT+MV GY KMGD
Sbjct: 148 LARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGD 207

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
            E+AR  F++MPER+ VSW+A+ +AY++    KE L+LF QM E G+ P+++  V  +++
Sbjct: 208 LESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISS 267

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV------------ 220
           C+ +G  T    +     + H+  N  + TA++DM++K G++  A ++            
Sbjct: 268 CSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVT 327

Query: 221 --------------------FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-G 259
                               F+ +  +D  +WN+MI+G A NG++  S+ELF  M+    
Sbjct: 328 WNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMD 387

Query: 260 TQPTETTFVAVLTTCTH 276
            QP E T  +VL+ C H
Sbjct: 388 IQPDEVTIASVLSACGH 404



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 77/369 (20%), Positives = 153/369 (41%), Gaps = 47/369 (12%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKM-GTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           H H+V        + VS LL   + +H       ++F  SP  D   ++ M+  Y +MG 
Sbjct: 21  HGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGA 80

Query: 113 FENARELFE------------------KMPERNAVSWSAIMAAYSRISDF---KEVLSLF 151
                 LF+                  K+  ++   + A +     I D      +L ++
Sbjct: 81  HNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLGHIDDHFIRNAILDMY 140

Query: 152 RQMQEVGMKPN------ESGLV---SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            +  +V +  N      E  L    S+++ C   G  T+ + + +        +N+I  T
Sbjct: 141 AKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMP----ARNIITWT 196

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           ++V  Y+K G + SA   F+ +  +   +WNAM S  A     K++L LF +M++ G  P
Sbjct: 197 SMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITP 256

Query: 263 TETTFVAVLTTCTH---AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            +TT+V  +++C+      +    L + +    V     +      ++D+ A+ G +E A
Sbjct: 257 DDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVK----TALLDMHAKFGNLEIA 312

Query: 320 EKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
               +E    LG   +A  W  ++SA    GK+ +   ++  + +  +  +++ +  Y  
Sbjct: 313 RNIFDE----LGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQ 368

Query: 379 YKEAGWDME 387
             E+   +E
Sbjct: 369 NGESAMSIE 377



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 115/273 (42%), Gaps = 27/273 (9%)

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F   P  +A  +S ++  YSR+    +V+SLF+    + ++P     + ++      G 
Sbjct: 56  IFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN 115

Query: 179 ITQGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           +      H+Y  K  H++ + I   A++DMY+K G V  A ++FE ++ +    WN+MIS
Sbjct: 116 M-----FHAYVLKLGHIDDHFI-RNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMIS 169

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM--VRDGLNLFENMSAVYG 295
           G   +G+  +++ LF+ M      P             +AKM  +      F+ M     
Sbjct: 170 GCWKSGNETEAVVLFNMM------PARNIITWTSMVTGYAKMGDLESARRYFDEMP---- 219

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
            E  +  +  +    A+    +EA     + +      D   W   +S+C   G   + +
Sbjct: 220 -ERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLAD 278

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
            + R + +        H++  +  K A  DM A
Sbjct: 279 SILRMIDQ-------KHIVLNSFVKTALLDMHA 304


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 235/432 (54%), Gaps = 36/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY        ++  Y  MLD G  P+N+T P ++KAC  L  +   G  +H +V+K 
Sbjct: 119 LIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE-GRSIHEYVIKS 177

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D FV ++L                               +D Y K G   +A  +F
Sbjct: 178 GWERDLFVGAAL-------------------------------IDMYAKCGCVMDAGRVF 206

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +K+  R+AV W++++AAY++     E +SL R+M   G++P E+ LV+V+++ A +  + 
Sbjct: 207 DKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLP 266

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H +  R+  + N  + TA++DMY+KCG V  AL++FE +  K   +WNA+I+G A
Sbjct: 267 YGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYA 326

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A  +L+LFD+M K   +P   TFV VL  C+  +++ +G  L+  M   YG+ P +
Sbjct: 327 MHGLAVGALDLFDKMRKE-DRPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTV 385

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY C++DLL   G ++EA   I          D+ VWGALL++C+I+G +E+      K
Sbjct: 386 QHYTCMIDLLGHCGQLDEAYDLIRNMS---VKPDSGVWGALLNSCKIHGNVELAELALEK 442

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L E+   D   +V+  N+Y ++G      K+R+++ +  +KK   CS IEV   V  FLA
Sbjct: 443 LIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLA 502

Query: 421 GDNRHAQAGEIY 432
           GD  H+ +  IY
Sbjct: 503 GDVSHSNSDAIY 514



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 150/327 (45%), Gaps = 40/327 (12%)

Query: 26  FEPN---NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           F P    +Y +  L+++C+    L N G  +HA     G   +  + + L+  Y++ + +
Sbjct: 40  FPPQPTTHYGYTSLLQSCIDSKAL-NPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSL 98

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             AR LFDK P +++  W  ++ GY   G  +NA                          
Sbjct: 99  LNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNA-------------------------- 132

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
                + L+ +M + G++P+   L  VL AC+ L AI +G  +H Y  +   E+++ +  
Sbjct: 133 -----IILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGA 187

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++DMY+KCG V  A  VF+ I  +DA  WN+M++  A NG   +S+ L   M  +G +P
Sbjct: 188 ALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRP 247

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           TE T V V+++      +  G  +       +G +   +    ++D+ A+ G V+ A   
Sbjct: 248 TEATLVTVISSSADVACLPYGREI-HGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALAL 306

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYG 349
            E     L       W A+++   ++G
Sbjct: 307 FER----LREKRVVSWNAIITGYAMHG 329



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 9/204 (4%)

Query: 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHL--EKNVILATAVVDMYSKCGHVHSALSVFE 222
           G  S+L +C    A+  G  +H  A+ YHL    N  LAT +V +Y+    + +A ++F+
Sbjct: 49  GYTSLLQSCIDSKALNPGKQLH--AQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            I  ++   WN +I G A NG    ++ L+ +M+  G +P   T   VL  C+    + +
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
           G ++ E +    G E  L   A ++D+ A+ G V +A +  ++    +   DA +W ++L
Sbjct: 167 GRSIHEYVIKS-GWERDLFVGAALIDMYAKCGCVMDAGRVFDK----IVVRDAVLWNSML 221

Query: 343 SACRIYGKIEVGNRVWRKLAEMGI 366
           +A    G  +    + R++A  G+
Sbjct: 222 AAYAQNGHPDESISLCREMAANGV 245


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/411 (34%), Positives = 228/411 (55%), Gaps = 10/411 (2%)

Query: 39  ACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVV 98
           AC  +  LE  G  VH+  VK G   + +V ++L+  Y     +G+ R +FD+   +D V
Sbjct: 427 ACSNIEALET-GKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTV 485

Query: 99  TWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG 158
           ++ + +    +   F+ AR++F  MP  + VSW+ I++A ++     E + +FR M    
Sbjct: 486 SYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHER 545

Query: 159 MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218
             PN   L  +L    +LGA   G  +H+ A +  ++  +++A A+V MY KC    S L
Sbjct: 546 ELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADS-L 604

Query: 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278
            VF+ +  +D   WN +I+G A +G  ++++ ++  MV +G  P E TFV +L  C+H+ 
Sbjct: 605 KVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSG 664

Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
           +V +G   F++MS+ YG+ P LEHYAC+VDLL RAG V+ AE FI +        D+ +W
Sbjct: 665 LVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMP---IEPDSVIW 721

Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISE 397
            ALL AC+I+  +E+G R   KL  +  ++   +V+  NIY   G WD E  KVRKL+ E
Sbjct: 722 SALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWD-EVAKVRKLMKE 780

Query: 398 TGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV---IHSFLKMSNLV 445
            G+ K PGCS +++   +  F+ GD  H Q   IY     +++ LK +  V
Sbjct: 781 RGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYV 831



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 124/240 (51%), Gaps = 12/240 (5%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR LFD  P RDV +W TM+ GY      E AR LFE+MPERN VSW+ +++ Y  I   
Sbjct: 145 ARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQH 204

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
                +FR M   GM P +  LVSVL+A  HLG       +H    +   E++V++ TA+
Sbjct: 205 GRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAI 264

Query: 205 VDMYSK-CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR-MVKSGTQP 262
           ++ Y+K    + SA+  FEG++ ++   W+ +I+ ++  G    +  ++ R  +KS   P
Sbjct: 265 LNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKS--VP 322

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
           + T+   +LT       + D   LF+ +      EP +  +  ++    +  MV+EAE  
Sbjct: 323 SRTS---MLTGLARYGRIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDEAEDL 374



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 17/266 (6%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPF----VVSSLLEFYSLVHKMGT 84
           N YT+  +I A      L   G    A  V   +  DP       +S+L   +   ++  
Sbjct: 289 NEYTWSTIIAA------LSQAGRIDDAFAV---YQRDPLKSVPSRTSMLTGLARYGRIDD 339

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           A+ LFD+  + +VV+W  M+ GY +    + A +LF +MP RN +SW+ ++A Y+R    
Sbjct: 340 AKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRS 399

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           ++ L   + +   GM P+ S L S   AC+++ A+  G  VHS A +   + N  +  A+
Sbjct: 400 EQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNAL 459

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           + +Y K   + S   +F+ ++ KD  ++N+ +S +  N    ++ ++F+ M      P  
Sbjct: 460 ITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM----PSPDV 515

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENM 290
            ++  +++ C  A    + + +F +M
Sbjct: 516 VSWTTIISACAQADQGNEAVEIFRSM 541



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 128/293 (43%), Gaps = 38/293 (12%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  AR +FD  P RD++ W +M+  Y   G  +  R L + +   N  + + +++ Y+R
Sbjct: 48  RLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTGTILLSGYAR 107

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               ++   +F  M   G++ N     +++T     G IT             L + +  
Sbjct: 108 AGRVRDARRVFDGM---GVR-NTVAWNAMVTCYVQNGDIT-------------LARKLFD 150

Query: 201 ATAVVDMYS----KCGHVHSAL-----SVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
           A    D+ S      G+ HS L     ++FE +  ++  +W  MISG  +     ++ ++
Sbjct: 151 AMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDM 210

Query: 252 FDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY---GVEPQLEHYACVVD 308
           F  M+  G  P +   V+VL+   H  + + G  + E++  +    G E  +     +++
Sbjct: 211 FRTMLCEGMTPEQPNLVSVLSAVRH--LGKPG--ILESIHVLVHKTGFERDVVVGTAILN 266

Query: 309 LLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
              +   M++ A KF E    G+   +   W  +++A    G+I+    V+++
Sbjct: 267 GYTKDVNMLDSAVKFFE----GMAARNEYTWSTIIAALSQAGRIDDAFAVYQR 315



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 84/207 (40%), Gaps = 23/207 (11%)

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG--DAKKSLELFDRMVKSG 259
           +A +    + G +H A  VF+ +  +D  AWN+MI     NG  DA +SL      +  G
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLA---DAISGG 93

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
              T T    +L+    A  VRD   +F+ M     V      +  +V    + G +  A
Sbjct: 94  NLRTGTI---LLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQNGDITLA 145

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
            K  +     +   D + W  +L+       +E    ++ ++ E     ++  +  Y + 
Sbjct: 146 RKLFD----AMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLI 201

Query: 380 KEAG--WDMEANKVRKLISETGMKKKP 404
           ++ G  WDM     R ++ E    ++P
Sbjct: 202 EQHGRAWDM----FRTMLCEGMTPEQP 224


>gi|356561520|ref|XP_003549029.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
           mitochondrial-like [Glycine max]
          Length = 506

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/440 (33%), Positives = 239/440 (54%), Gaps = 4/440 (0%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+G+++ +  + +++ +  ML     PN +TF  LI +   LG +   G  +HA  +K 
Sbjct: 52  MIQGFVKRHCHEDAIYLFSKMLASKIRPNEFTFGTLINSSAALGNVV-VGKQLHACAMKI 110

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G     FV SSLL+ Y     +  A+  F  +   +VV++TT++ GY K G FE+A  +F
Sbjct: 111 GLSCHVFVGSSLLDLYFKQSTIEDAQKAFGDTQHPNVVSYTTLICGYLKRGRFEDALRVF 170

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MPERN VSW+A++   S+    +E ++ F  M   G  PNES    V+ A A++ ++ 
Sbjct: 171 HEMPERNVVSWNAMVGGCSQTGHNEEAVNFFIGMLREGFIPNESTFPCVICAAANIASLG 230

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H+ A ++  + +  +  +++  Y+KCG +  +L +F+ +  ++  +WNAMI G A
Sbjct: 231 IGKSFHACAIKFLGKVDQFVGNSLISFYAKCGSMEDSLLMFDKLFKRNIVSWNAMICGYA 290

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG   +++  F+RM   G +P   T + +L  C HA +V +G + F           + 
Sbjct: 291 QNGRGAEAISFFERMCSEGYKPNYVTLLGLLWACNHAGLVDEGYSYFNRARLESPGLLKS 350

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+V+LLAR+G   EAE F++      G G    W ALL+ C+I+  + +G    RK
Sbjct: 351 EHYACMVNLLARSGRFAEAEDFLQSVPFDPGLG---FWKALLAGCQIHSNMRLGELAARK 407

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + ++   D S++V+  N +  AG   +   VR  + E GMK+ PG S IEV G V  FL 
Sbjct: 408 ILDLDPDDVSSYVMLSNAHSAAGKWSDVATVRTEMKEKGMKRIPGSSWIEVRGEVHAFLT 467

Query: 421 GDNRHAQAGEIYRVIHSFLK 440
           GD  H +  EIY +++ F +
Sbjct: 468 GDQNHDKKDEIYLLLNFFFE 487



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 94/203 (46%), Gaps = 33/203 (16%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           F  A +LFE+M +    S + ++  + +    ++ + LF +M    ++PNE    +++ +
Sbjct: 31  FHVACQLFEEMSDLTVASATTMIQGFVKRHCHEDAIYLFSKMLASKIRPNEFTFGTLINS 90

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK---------------------- 210
            A LG +  G  +H+ A +  L  +V + ++++D+Y K                      
Sbjct: 91  SAALGNVVVGKQLHACAMKIGLSCHVFVGSSLLDLYFKQSTIEDAQKAFGDTQHPNVVSY 150

Query: 211 ----CGHV-----HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
               CG++       AL VF  +  ++  +WNAM+ G +  G  ++++  F  M++ G  
Sbjct: 151 TTLICGYLKRGRFEDALRVFHEMPERNVVSWNAMVGGCSQTGHNEEAVNFFIGMLREGFI 210

Query: 262 PTETTFVAVLTTCTHAKMVRDGL 284
           P E+TF  V+  C  A +   G+
Sbjct: 211 PNESTFPCVI--CAAANIASLGI 231


>gi|326530660|dbj|BAK01128.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 613

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/346 (38%), Positives = 210/346 (60%), Gaps = 12/346 (3%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +S+L  ++    M  AR +FD  P+RDVV+W +M+DGY + GD   AR +F+ MP R+ V
Sbjct: 233 NSMLAGHTRCGDMEEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTV 292

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAITQGLWVHSY 188
           SW+ ++A Y+R+ +++E L LF  M  VG   PNE   VSVLTAC  LG + +G  VH  
Sbjct: 293 SWNVVLALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDL 352

Query: 189 AKRY--HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
            ++    L  +V+L TA++ MY+KCG + +A  +F+ +  +   +WN+MI G  ++G ++
Sbjct: 353 VRQRWETLVPDVLLLTALLTMYAKCGVMEAARVIFDSMGERSVPSWNSMIIGYGLHGQSE 412

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
           K+LELF  M ++G +P ETTFV VL++C H  +V +G   F+ M  +YGVEP+ EH+ C+
Sbjct: 413 KALELFLEMERTGPRPNETTFVCVLSSCAHGGLVLEGWWCFDRMVRLYGVEPKAEHFGCM 472

Query: 307 VDLLARAGMVEEAEKFI---EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
           +DLL RAG++ +++  +   +EK          +WGA++SA R      +G  V +KL E
Sbjct: 473 MDLLGRAGLLTDSDTLVQNLQEK------ASPALWGAMVSASRAQNGSRLGEFVGKKLIE 526

Query: 364 MGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
           M   +   +VL  NIY   G   +  KVR+++   G +K  G S++
Sbjct: 527 MRPKEVGPYVLLSNIYAGEGRWNDVEKVREMMKGNGAEKDVGLSLV 572



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 163/358 (45%), Gaps = 36/358 (10%)

Query: 5   YMQANFPKLSVFCYLD----MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ A+ P L  F   D    +L     PN +T  PL  A  +           HA  V+ 
Sbjct: 81  HLPASHPHLLRFLPFDHLTLLLLSSGSPNRHTIYPLPAASSL-----------HALAVRS 129

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
           G    D  + +SLL  Y       +AR LF   P  D VTW T++    + G   +AR L
Sbjct: 130 GHLPADLRLANSLLARYLAHGSHASARRLFADVPRPDAVTWNTLLRACLRSGLLPSARHL 189

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F++MP R+ VS++++++ ++   D      LF  M E  +    S +++  T C  +   
Sbjct: 190 FDQMPVRDLVSYNSMLSGHAAAGDMDGARQLFDGMPERDVVSWNS-MLAGHTRCGDM--- 245

Query: 180 TQGLWVHSYAKRYH---LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
                    A+R      E++V+   +++D Y++ G V +A +VF+G+  +   +WN ++
Sbjct: 246 -------EEARRMFDAMPERDVVSWNSMLDGYAQAGDVLAARAVFDGMPRRSTVSWNVVL 298

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY- 294
           +  A   + ++ L LFD M+  G   P E TFV+VLT C     +  G  + + +   + 
Sbjct: 299 ALYARVKNWRECLRLFDAMMAVGAAVPNEKTFVSVLTACGSLGDLERGKRVHDLVRQRWE 358

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
            + P +     ++ + A+ G++E A    +     +G      W +++    ++G+ E
Sbjct: 359 TLVPDVLLLTALLTMYAKCGVMEAARVIFDS----MGERSVPSWNSMIIGYGLHGQSE 412


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/414 (35%), Positives = 225/414 (54%), Gaps = 41/414 (9%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87
           PN +TF  +++AC  +  L N G  +H HV+K G   D FV ++L+              
Sbjct: 136 PNQFTFASVLQACATMEGL-NLGNQIHCHVIKIGLHSDVFVSNALM-------------- 180

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
                            D Y K G  EN+ ELF + P RN V+W+ ++  + ++ D ++ 
Sbjct: 181 -----------------DVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKA 223

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L LF  M E  ++  E    S L ACA L A+  GL +HS   +   +K++++  A++DM
Sbjct: 224 LRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDM 283

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y+KCG +  A  VF+ ++ +D  +WNAMISG +M+G  +++L +FD+M ++  +P + TF
Sbjct: 284 YAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTF 343

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
           V VL+ C +A ++  G   F +M   +G+EP +EHY C+V LL R G +++A K I+E  
Sbjct: 344 VGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIP 403

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
                    VW ALL AC I+  IE+G    +++ EM   D +THVL  N+Y  A  WD 
Sbjct: 404 ---FQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDN 460

Query: 387 EANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            A+ VRK +   G+KK+PG S IE  G V  F  GD  H +     RVI+  L+
Sbjct: 461 VAS-VRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEV----RVINGMLE 509



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 136/268 (50%), Gaps = 6/268 (2%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D+  W  +++ Y K     +A +LF++MPERN +S+  ++  Y+    F E + LF ++ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
              + PN+    SVL ACA +  +  G  +H +  +  L  +V ++ A++D+Y+KCG + 
Sbjct: 132 REVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 190

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           +++ +F    +++   WN +I G    GD +K+L LF  M++   Q TE T+ + L  C 
Sbjct: 191 NSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
               +  GL +  +++     +  +     ++D+ A+ G +++A    +     +   D 
Sbjct: 251 SLAALEPGLQI-HSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDL----MNKQDE 305

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAE 363
             W A++S   ++G      R++ K+ E
Sbjct: 306 VSWNAMISGYSMHGLGREALRIFDKMQE 333



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 111/246 (45%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G++Q    + ++  +L+ML+   +    T+   ++AC  L  LE  G+ +H+  VK 
Sbjct: 210 VIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEP-GLQIHSLTVKT 268

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F +D  V ++L++ Y+    +  AR +FD    +D V+W  M+ GY   G    A  +F
Sbjct: 269 TFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIF 328

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +K                               MQE  +KP++   V VL+ACA+ G + 
Sbjct: 329 DK-------------------------------MQETEVKPDKLTFVGVLSACANAGLLD 357

Query: 181 QG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           QG  +  S  + + +E  +   T +V +  + GH+  A+ + + I        W A++  
Sbjct: 358 QGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGA 417

Query: 239 VAMNGD 244
             ++ D
Sbjct: 418 CVIHND 423


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/419 (33%), Positives = 218/419 (52%), Gaps = 35/419 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ ML    EP+++T+  ++KAC     L N+G  +H  ++K G G D FV S+L     
Sbjct: 429 FVSMLRSTMEPDDFTYGSVVKACAGQQAL-NYGTEIHGRIIKSGMGLDWFVGSAL----- 482

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     VD YGK G    A ++  ++ E+  VSW++I++ 
Sbjct: 483 --------------------------VDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISG 516

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +S     +     F QM E+G+ P+     +VL  CA++  I  G  +H+   +  L  +
Sbjct: 517 FSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSD 576

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V +A+ +VDMYSKCG++  +  +FE    +D   W+AMI   A +G  +K++ LF+ M  
Sbjct: 577 VYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQL 636

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +P  T F++VL  C H   V  GL+ F+ M + YG++PQ+EHY+C+VDLL R+G V 
Sbjct: 637 LNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVN 696

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA K IE         D  +W  LLS C++ G +EV  + +  L ++   D S +VL  N
Sbjct: 697 EALKLIESMP---FEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLAN 753

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           +Y   G   E  K+R ++    +KK+PGCS IEV   V  FL GD  H ++ EIY   H
Sbjct: 754 VYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRDEVHTFLVGDKAHPRSEEIYEQTH 812



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 80/255 (31%), Positives = 139/255 (54%), Gaps = 1/255 (0%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           TF  +++ C  L  L N G  VH  ++  GF    +V + LL+FY    KM  A  +FD+
Sbjct: 8   TFSHILQKCSNLKAL-NPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
            P RDV++W T++ GY  +G+   A+ LF+ MPER+ VSW+++++ Y      ++ + +F
Sbjct: 67  MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +M+ + +  + +    +L AC+ +     GL VH  A +   E +V+  +A+VDMYSKC
Sbjct: 127 VRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
             +  A  VF  +  ++   W+A+I+G   N    + L+LF  M+K G   +++T+ +V 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 272 TTCTHAKMVRDGLNL 286
            +C      + G  L
Sbjct: 247 RSCAGLSAFKLGTQL 261



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 160/346 (46%), Gaps = 41/346 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGM--FVHAHVV 58
           ++  Y+     + S+  ++ M  +    +  TF  ++KAC     +E++G+   VH   +
Sbjct: 109 LLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKAC---SGIEDYGLGLQVHCLAI 165

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + GF                               + DVVT + +VD Y K    ++A  
Sbjct: 166 QMGF-------------------------------ENDVVTGSALVDMYSKCKKLDDAFR 194

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F +MPERN V WSA++A Y +   F E L LF+ M +VGM  ++S   SV  +CA L A
Sbjct: 195 VFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSA 254

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
              G  +H +A +     + I+ TA +DMY+KC  +  A  VF  + N    ++NA+I G
Sbjct: 255 FKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVG 314

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
            A      K+L++F  + ++     E +    LT C+  K   +G+ L   ++   G+  
Sbjct: 315 YARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQL-HGLAVKCGLGF 373

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            +     ++D+  + G + EA    EE    +   DA  W A+++A
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEE----MERRDAVSWNAIIAA 415



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/380 (24%), Positives = 171/380 (45%), Gaps = 65/380 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY+Q +     +  + DML +G   +  T+  + ++C  L   +  G  +H H +K 
Sbjct: 210 VIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFK-LGTQLHGHALKS 268

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  D  + ++ L+ Y+   +M      FD                         A ++F
Sbjct: 269 DFAYDSIIGTATLDMYAKCERM------FD-------------------------AWKVF 297

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +P     S++AI+  Y+R     + L +F+ +Q   +  +E  L   LTAC+ +    
Sbjct: 298 NTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHL 357

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ +H  A +  L  N+ +A  ++DMY KCG +  A  +FE +  +DA +WNA+I+   
Sbjct: 358 EGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHE 417

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFEN 289
            N +  K+L LF  M++S  +P + T+ +V+  C            H ++++ G+ L   
Sbjct: 418 QNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWF 477

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACR 346
           + +             +VD+  + GM+ EAEK    +EEK           W +++S   
Sbjct: 478 VGSA------------LVDMYGKCGMLMEAEKIHARLEEKT-------TVSWNSIISGFS 518

Query: 347 IYGKIEVGNRVWRKLAEMGI 366
              + E   R + ++ EMGI
Sbjct: 519 SQKQSENAQRYFSQMLEMGI 538



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 126/254 (49%), Gaps = 5/254 (1%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++    T++D YGK G    A  +FE+M  R+AVSW+AI+AA+ +  +  + LSLF  M 
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
              M+P++    SV+ ACA   A+  G  +H    +  +  +  + +A+VDMY KCG + 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  +   +  K   +WN++ISG +    ++ +   F +M++ G  P   T+  VL  C 
Sbjct: 494 EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCA 553

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           +   +  G  +   +  +  +   +   + +VD+ ++ G ++++    E+        D 
Sbjct: 554 NMATIELGKQIHAQILKL-QLHSDVYIASTLVDMYSKCGNMQDSRLMFEKA----PKRDY 608

Query: 336 NVWGALLSACRIYG 349
             W A++ A   +G
Sbjct: 609 VTWSAMICAYAYHG 622


>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
 gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
          Length = 597

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 203/348 (58%), Gaps = 4/348 (1%)

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
           RD +  T+++  Y   GD + AR+LF++MP R+AV+W+ ++  Y+R    K+ L LF +M
Sbjct: 154 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 213

Query: 155 Q--EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           +  +   +P++   + +L AC+ LGA+  G  V +YA+ +     + +  +++ MY +CG
Sbjct: 214 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 273

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            V  A  VF G   K    W AMISG+A NG    ++ +F+ M++S   P E TF  VL+
Sbjct: 274 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 333

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
            C+H+ +V +G   F+ M   YG++P + HY C+VDL+ RAG+++EA +F+  +M     
Sbjct: 334 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMK--VA 391

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392
            DA +W  LL ACRI+G +++G RV   L E+       +VL  N Y   G   + +++R
Sbjct: 392 PDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIR 451

Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           KL+ E G++  PGC+ +E NG V EF+A D+ H +  EIY  +    K
Sbjct: 452 KLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYK 499



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 41/227 (18%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D   EP++ T   L++AC  LG L+ FG  V A+  + G+G +  V +SL+  Y     +
Sbjct: 217 DSESEPDDVTCILLLQACSSLGALD-FGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCV 275

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             A  +F  +P + VVTWT M+ G    G F N                           
Sbjct: 276 DKAYRVFSGTPQKSVVTWTAMISGLAANG-FGN--------------------------- 307

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK-RYHLEKNVILA 201
              + +S+F +M    + P+E     VL+AC+H G + +G       +  Y L+ NV   
Sbjct: 308 ---DAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHY 364

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNG 243
             +VD+  + G +  A   +E ++N+     DA  W  ++    ++G
Sbjct: 365 GCIVDLMGRAGLLDEA---YEFVTNEMKVAPDATIWRTLLGACRIHG 408


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/351 (37%), Positives = 211/351 (60%), Gaps = 4/351 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SL++ Y    ++  A+ LFDK P RDVVTW TMVDGY K+G    A+ LF++MP+R+ V
Sbjct: 258 NSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVV 317

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           +++++MA Y +     E + +F  M+ E  + P+E+ LV VL+A A LG +++ + +H Y
Sbjct: 318 AYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 377

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
                      L  A++DMYSKCG +  A+ VFE I NK    WNAMI G+A++G  + +
Sbjct: 378 TVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGLGESA 437

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
            ++  ++ +   +P + TFV VL  C+H+ +V++GL  FE M   + +EP+L+HY C+VD
Sbjct: 438 FDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYGCMVD 497

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +L+R+G +E A+  IEE    +   D  +W   L+AC  + + E G  V + L      +
Sbjct: 498 ILSRSGRIELAKNLIEEM--PIEPNDV-IWRTFLTACSHHKEFETGELVAKHLILQAGYN 554

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            S++VL  N+Y   G   E  +VR ++ E  ++K PGCS IE++G V EF 
Sbjct: 555 PSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSVHEFF 605



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 178/357 (49%), Gaps = 26/357 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ +     P+ ++  +  ML  G   + ++   ++KAC  LG ++  GM  H  + K 
Sbjct: 94  VIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKE-GMQXHGFLRKT 152

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ + L+  Y     +G AR +FD+   RD V++ +M+DGY K G  E+ARELF
Sbjct: 153 GIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARELF 212

Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLS-LFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + MP  ++N +SW++++  Y++ +D  ++ S LF +M E  +        S++      G
Sbjct: 213 DLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKDLISWN----SLIDGYVKHG 268

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            I     +     R    ++V+    +VD Y+K G VH A S+F+ +  +D  A+N+M++
Sbjct: 269 RIEDAKDLFDKMPR----RDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSMMA 324

Query: 238 GVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           G   N    +++++F+ M K S   P ETT V VL+       +   +++      +Y V
Sbjct: 325 GYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH-----LYTV 379

Query: 297 EPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           E +     +    ++D+ ++ G +++A    E     +     + W A++    I+G
Sbjct: 380 EKKFLLGGKLGVALIDMYSKCGSIQQAMGVFER----IENKSIDHWNAMIGGLAIHG 432



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 120/251 (47%), Gaps = 20/251 (7%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+A++ ++S   + ++ L LF  M + G+  ++  L  VL AC+ LG + +G+  H + +
Sbjct: 91  WNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSRLGFVKEGMQXHGFLR 150

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +  +  ++ L   ++ +Y KCG +  A  VF+ +S +D+ ++N+MI G    G  + + E
Sbjct: 151 KTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIESARE 210

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVR-DGL----NLFENMSAVYGVEPQLEHYAC 305
           LFD M      P+E   +    +  +    R DG+    NLF+ M      E  L  +  
Sbjct: 211 LFDLM------PSEKKNLISWNSMINGYAQRADGVDIASNLFDEMP-----EKDLISWNS 259

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++D   + G +E+A+   ++    +   D   W  ++      G +     ++ ++ +  
Sbjct: 260 LIDGYVKHGRIEDAKDLFDK----MPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRD 315

Query: 366 ITDFSTHVLSY 376
           +  +++ +  Y
Sbjct: 316 VVAYNSMMAGY 326


>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
          Length = 611

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/348 (35%), Positives = 203/348 (58%), Gaps = 4/348 (1%)

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
           RD +  T+++  Y   GD + AR+LF++MP R+AV+W+ ++  Y+R    K+ L LF +M
Sbjct: 168 RDALLATSLMRCYANRGDGDGARKLFDEMPVRDAVAWNVLITCYARNRRTKDALKLFEEM 227

Query: 155 Q--EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           +  +   +P++   + +L AC+ LGA+  G  V +YA+ +     + +  +++ MY +CG
Sbjct: 228 RGKDSESEPDDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCG 287

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            V  A  VF G   K    W AMISG+A NG    ++ +F+ M++S   P E TF  VL+
Sbjct: 288 CVDKAYRVFSGTPQKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLS 347

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
            C+H+ +V +G   F+ M   YG++P + HY C+VDL+ RAG+++EA +F+  +M     
Sbjct: 348 ACSHSGLVDEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMK--VA 405

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392
            DA +W  LL ACRI+G +++G RV   L E+       +VL  N Y   G   + +++R
Sbjct: 406 PDATIWRTLLGACRIHGHVDLGERVIGNLIELKAQQAGDYVLLLNTYAAVGEWSKVSEIR 465

Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
           KL+ E G++  PGC+ +E NG V EF+A D+ H +  EIY  +    K
Sbjct: 466 KLMQEEGIQTTPGCTTVEHNGTVHEFIADDDAHPRKVEIYENLSEIYK 513



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 41/227 (18%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D   EP++ T   L++AC  LG L+ FG  V A+  + G+G +  V +SL+  Y     +
Sbjct: 231 DSESEPDDVTCILLLQACSSLGALD-FGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCV 289

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             A  +F  +P + VVTWT M+ G    G F N                           
Sbjct: 290 DKAYRVFSGTPQKSVVTWTAMISGLAANG-FGN--------------------------- 321

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK-RYHLEKNVILA 201
              + +S+F +M    + P+E     VL+AC+H G + +G       +  Y L+ NV   
Sbjct: 322 ---DAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFRFFDMMRCEYGLKPNVRHY 378

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNG 243
             +VD+  + G +  A   +E ++N+     DA  W  ++    ++G
Sbjct: 379 GCIVDLMGRAGLLDEA---YEFVTNEMKVAPDATIWRTLLGACRIHG 422


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 219/375 (58%), Gaps = 8/375 (2%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
           +D    +++L+ Y+   KM  A  LF   P+R+VV+W+T+V GY K GD E AR +F+KM
Sbjct: 248 KDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKM 307

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           P +N V+W+ +++A ++    +E   LF QM+E  ++ + + +VS+L ACA  G++  G 
Sbjct: 308 PTKNLVTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGK 367

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAMISGVAMN 242
            +H Y +   L ++  +  A++DM+ KCG V+ A  VF+  I+ KD+ +WN +I G AM+
Sbjct: 368 RIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMH 427

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G   K+L+ F +M   G +P   T + VL+ CTH   V +G   F NM   YG+ PQ+EH
Sbjct: 428 GHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEH 487

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN--VWGALLSACRIYGKIEVGNRVWRK 360
           Y C++DLL R G++EEA   I+         D N  +WG+LLSACR++  +E       +
Sbjct: 488 YGCMIDLLGRGGLIEEAVGLIKSM-----PWDPNEVIWGSLLSACRLHKNVEYAEIAVNE 542

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           L+++  ++   + +  NIY EAG   +  K R  +  TG +K  G S IE++    EF  
Sbjct: 543 LSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMKGTGSQKSAGSSWIELDEAFHEFTV 602

Query: 421 GDNRHAQAGEIYRVI 435
           GD +H+ + +I  ++
Sbjct: 603 GDRKHSDSDQISEMV 617



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 132/316 (41%), Gaps = 51/316 (16%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTW--TTMVDGYGKM 110
           +HA ++K G   DP   S L+  Y+L  ++  +R +F   P+    T+   T++  Y   
Sbjct: 77  LHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALN 136

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
                A  LF  MP+R++ ++S ++ A S                        SGL  + 
Sbjct: 137 ALPHAAVSLFSAMPQRDSFTYSFLIKALS-----------------------SSGLTPLR 173

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
                         VHS+  +    ++  +  A++D YSK G    A  VFE +  +D  
Sbjct: 174 A-------------VHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTV 220

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +WN+ ++ +   G+   +  +FD M    T     ++  VL   T A  + D   LF+ M
Sbjct: 221 SWNSAMAAMVRQGEVASARRMFDEMPDKDT----VSWNTVLDGYTKAGKMEDAFELFQCM 276

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
                 E  +  ++ VV    + G +E A + I +KM      +   W  ++SAC   G 
Sbjct: 277 P-----ERNVVSWSTVVSGYCKKGDIEMA-RVIFDKM---PTKNLVTWTIMVSACAQNGL 327

Query: 351 IEVGNRVWRKLAEMGI 366
           +E   R++ ++ E  +
Sbjct: 328 VEEAGRLFTQMKEAAV 343


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 239/436 (54%), Gaps = 38/436 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I G+ Q   P+ ++     M   G +P+ +T   L+ AC  L  L+ +G  +H +V++ 
Sbjct: 422 LIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQ-YGKEIHGYVLRN 480

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SLL  Y  +H                              G   +AR LF
Sbjct: 481 GLETDFFVGTSLLSHY--IH-----------------------------CGKASSARVLF 509

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M ++N VSW+A+++ YS+     E L+LFR+    G++ +E  +VSV  AC+ L A+ 
Sbjct: 510 DRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALR 569

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G   H Y  +    ++  +  +++DMY+K G +  +  VF+G+ +K+  +WNA+I    
Sbjct: 570 LGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHG 629

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  K+++EL++RM K G  P   T++ +L  C HA +V +GL  F+ M     +EP+L
Sbjct: 630 IHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKL 689

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC++D+LARAG +++A + + E        D  +W +LL +CR +G +E+G +V +K
Sbjct: 690 EHYACLIDMLARAGRLDDALRLVNEMP---EEADNRIWSSLLRSCRTFGALEIGEKVAKK 746

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+       +VL  N+Y   G WD    +VR+++ E G++K  GCS IEV G V  F+
Sbjct: 747 LLELEPDKAENYVLLSNLYAGLGKWD-GVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFV 805

Query: 420 AGDNRHAQAGEIYRVI 435
            GD+   ++ EI RVI
Sbjct: 806 VGDSLQPKSAEI-RVI 820



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 161/347 (46%), Gaps = 44/347 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVV 58
           ++ GY +       V  ++D++ D  F+P+N+TFP +IKAC   G L+   G  +H  V+
Sbjct: 116 LVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACG--GILDVRLGEVIHGMVI 173

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           K G   D FV ++L                               V  YGK G  + A +
Sbjct: 174 KMGLVLDVFVGNAL-------------------------------VGMYGKCGAVDEAMK 202

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLG 177
           +F+ MPE N VSW++++ A+S     ++   L  +M  E G+ P+   +V++L  CA  G
Sbjct: 203 VFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEG 262

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +  G+ +H  A +  L + V++  A+V MYSKCG+++ A   F   +NK+  +WN MIS
Sbjct: 263 EVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMIS 322

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQ--PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
             ++ GD  ++  L   M   G +    E T + VL  C     +R  L      S  + 
Sbjct: 323 AFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRS-LKELHGYSFRHC 381

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            +  +E     +   A+ G +  AEK       G+G    + W AL+
Sbjct: 382 FQ-HVELSNAFILAYAKCGALNSAEKVFH----GIGDKTVSSWNALI 423



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 137/286 (47%), Gaps = 36/286 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI  + +  F + S    ++ML + G  P+  T   ++  C   G ++  GM +H   VK
Sbjct: 218 MICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVD-IGMGIHGLAVK 276

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G  E+  V ++++  YS                               K G    A+  
Sbjct: 277 LGLSEEVMVNNAMVYMYS-------------------------------KCGYLNEAQMS 305

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG--MKPNESGLVSVLTACAHLG 177
           F K   +N VSW+ +++A+S   D  E  +L ++MQ  G  MK NE  +++VL AC    
Sbjct: 306 FVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKL 365

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            +     +H Y+ R H  ++V L+ A +  Y+KCG ++SA  VF GI +K   +WNA+I 
Sbjct: 366 QLRSLKELHGYSFR-HCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIG 424

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           G A NGD +K+L L  +M  SG QP   T  ++L  C H K ++ G
Sbjct: 425 GHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYG 470



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 133/266 (50%), Gaps = 19/266 (7%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y K G   +A ++F  + ++   SW+A++  +++  D ++ L L  QM   G +P+   +
Sbjct: 395 YAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTI 454

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
            S+L ACAHL ++  G  +H Y  R  LE +  + T+++  Y  CG   SA  +F+ + +
Sbjct: 455 SSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKD 514

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--- 283
           K+  +WNAMISG + NG   +SL LF + +  G Q  E   V+V   C+    +R G   
Sbjct: 515 KNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEA 574

Query: 284 ----LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
               L   +   A  G          ++D+ A++G ++E+ K  +    GL   +   W 
Sbjct: 575 HGYVLKALQTEDAFVGCS--------IIDMYAKSGCIKESRKVFD----GLKDKNVASWN 622

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMG 365
           A++ A  I+G  +    ++ ++ ++G
Sbjct: 623 AIIVAHGIHGHGKEAIELYERMKKVG 648



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 131/275 (47%), Gaps = 14/275 (5%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM- 154
           D V  T ++  Y   G   ++R +F+ M  +N + W+A+++ Y+R   + +V+ +F  + 
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
            +   +P+     SV+ AC  +  +  G  +H    +  L  +V +  A+V MY KCG V
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTT 273
             A+ VF+ +   +  +WN+MI   + NG ++ S +L   M+ + G  P   T V +L  
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV 257

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C     V  G+ +   ++   G+  ++     +V + ++ G + EA+      M  +   
Sbjct: 258 CAGEGEVDIGMGI-HGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQ------MSFVKNN 310

Query: 334 DANV--WGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           + NV  W  ++SA  + G +   N  +  L EM I
Sbjct: 311 NKNVVSWNTMISAFSLEGDV---NEAFNLLQEMQI 342



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 3/158 (1%)

Query: 169 VLTACAHLGAITQGLWVHSY-AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           +L AC +   I  G  +H + +   H   + +L T ++ MY+ CG    +  VF+ +  K
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 228 DAGAWNAMISGVAMNGDAKKSLELF-DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           +   WNA++SG   NG     +++F D +  +  QP   TF +V+  C     VR G  +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG-EV 167

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
              M    G+   +     +V +  + G V+EA K  +
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFD 205


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 240/442 (54%), Gaps = 5/442 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY Q  F +     Y  MLD  G  PN  T   +++AC     L  FGM VH  +++
Sbjct: 211 MIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLV-FGMKVHQFIIE 269

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                D    +SL+  Y+    +  AR LF++  ++D VT+ ++V GY   G  + A +L
Sbjct: 270 RKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDL 329

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M      +W+A+++   + +  + +L L ++MQE G +PN   L S+L   +    +
Sbjct: 330 FREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNL 389

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +H+YA R     N+ +AT+++D Y+K G +  A  VF+   ++    W A+IS  
Sbjct: 390 KGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSKDRSLIVWTAIISAY 449

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           + +GDA  +L LF  M+ +GTQP   TF AVL  C H+ MV +   +F+ M   YG +P 
Sbjct: 450 SAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPC 509

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +EHYAC+V +L+RAGM+ EA +FI  KM      +A VWGALL+   + G +E+G  V  
Sbjct: 510 VEHYACMVGVLSRAGMLSEAAEFI-CKMP--IEPNAKVWGALLNGVSVSGDVELGKFVCD 566

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            L  M   +   +V+  N+Y +AG   EA  +R+ + + G+KK PG S IE +G +  F+
Sbjct: 567 HLFNMEPENTGNYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIETSGGLRSFI 626

Query: 420 AGDNRHAQAGEIYRVIHSFLKM 441
           A D    ++ EIY ++   L +
Sbjct: 627 ARDVSSERSEEIYGMLEGLLGL 648



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 133/273 (48%), Gaps = 35/273 (12%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
           +P+N+T   ++KA  +L P       V   V++ GF  D FVV++L+ +YS   + G AR
Sbjct: 135 KPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIAR 194

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            LFD+  DRD+V+W +M+ GY + G +E+ +EL+ KM                       
Sbjct: 195 ILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKM----------------------- 231

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
                  +   G++PN   +VSVL ACA    +  G+ VH +     +E +V    +++ 
Sbjct: 232 -------LDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAHNSLIG 284

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           +Y+KCG +  A  +F  +SNKD   + +++SG   +G   K+++LF  M      P  +T
Sbjct: 285 LYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREM----KNPRLST 340

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           + AV++           L L + M   +G  P 
Sbjct: 341 WNAVISGLVQNNCNEGILELVQEMQE-FGFRPN 372



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 50/355 (14%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           L   C ++ LD G       F  LI+ C     L      +HA +V      D F+ S L
Sbjct: 23  LQNLCSVNGLDYG------AFGRLIQHCSDHRLLRQAKQ-LHARIVLSSLTPDNFLASKL 75

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
           + FYS                               K      A ++F+K+ ++N  SW+
Sbjct: 76  ITFYS-------------------------------KSNHLYEAHKVFDKILDKNIFSWN 104

Query: 133 AIMAAYSRISDFK----EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT-QGLWVHS 187
           A++  YS I +       +LS       + +KP+   +  VL A + L   +     V  
Sbjct: 105 AMLIGYS-IHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAKEVQC 163

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           +  R+  + ++ +  A++  YS+C     A  +F+ + ++D  +WN+MI+G +  G  + 
Sbjct: 164 FVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGGFYED 223

Query: 248 SLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
             EL+ +M+ S G +P   T V+VL  C     +  G+ + + +     VE  +  +  +
Sbjct: 224 CKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIE-RKVEMDVSAHNSL 282

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           + L A+ G ++ A +   E    +   D   +G+++S    +G ++    ++R++
Sbjct: 283 IGLYAKCGSLDYARELFNE----MSNKDEVTYGSIVSGYMTHGFVDKAMDLFREM 333


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/403 (35%), Positives = 224/403 (55%), Gaps = 6/403 (1%)

Query: 41  VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDVVT 99
           ++ G ++N GM   A  V  G  E   V  ++++  Y    +M  AR LF+  P ++V +
Sbjct: 272 MVSGYVQN-GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS 330

Query: 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
           W TM+ GY + GD   AR  F++MP+R+++SW+AI+A Y++    +E L LF +M+  G 
Sbjct: 331 WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE 390

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
           + N S   S L+ CA + A+  G  VH    +  LE    +  A++ MY KCG++  A  
Sbjct: 391 RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYI 450

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279
           VFEGI  K+  +WN MI+G A +G  K++L LF+ M K+G  P + T V VL+ C+H  +
Sbjct: 451 VFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGL 510

Query: 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
           V  G   F +M+  YG+    +HY C++DLL RAG +++A+  ++         DA  WG
Sbjct: 511 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM---PFEPDAATWG 567

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399
           ALL A RI+G  E+G +  + + EM   +   +VL  N+Y  +G   +  ++R  + + G
Sbjct: 568 ALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRG 627

Query: 400 MKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF-LKM 441
           +KK PG S +EV   +  F  GD+ H +   IY  +    LKM
Sbjct: 628 VKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKM 670



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 150/333 (45%), Gaps = 49/333 (14%)

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y   +++  AR +FD+ P+RD V+W TM+ GY + G+   A+ LFE+ P R+  +W+A++
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 273

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           + Y +     E   +F  M E     N     +++        + Q         R   E
Sbjct: 274 SGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYVQCKRMDQA--------RELFE 321

Query: 196 ----KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
               +NV     ++  Y++ G +  A + F+ +  +D+ +W A+I+G A +G  +++L L
Sbjct: 322 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 381

Query: 252 FDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGL---------------- 284
           F  M + G +   +TF + L+TC            H ++V+ GL                
Sbjct: 382 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 441

Query: 285 --NLFENMSAVYGV-EPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGA 340
             N+ +      G+ E ++  +  ++   AR G  +EA    E  K  G+   D  + G 
Sbjct: 442 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG- 500

Query: 341 LLSACRIYGKIEVGNRVWRKLAE-MGITDFSTH 372
           +LSAC   G ++ G   +  + +  GIT  S H
Sbjct: 501 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 42/310 (13%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR LFD+ P+RDVV+W  M+ GY + G  + A+E+F++MP +N++SW+ ++AAY +    
Sbjct: 130 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRI 189

Query: 145 KEVLSLFRQMQE---------VGMKPNESGLVS---VLTACAHLGAITQGLWVHSYAKRY 192
           ++   LF    +         +G     + LV    +         ++    +  YA+  
Sbjct: 190 EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG 249

Query: 193 HL-----------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
            L            ++V   TA+V  Y + G +  A  VF+G+  K++ +WNA+I+G   
Sbjct: 250 ELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQ 309

Query: 242 NGDAKKSLELFDRMVKSGTQPTE--TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
                ++ ELF+ M      P +  +++  ++T       +    N F+ M       PQ
Sbjct: 310 CKRMDQARELFEAM------PCQNVSSWNTMITGYAQNGDIAQARNFFDRM-------PQ 356

Query: 300 LE--HYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            +   +A ++   A++G  EEA   F+E K  G    + + + + LS C     +E+G +
Sbjct: 357 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG-ERLNRSTFTSTLSTCAEIAALELGKQ 415

Query: 357 VWRKLAEMGI 366
           V  ++ + G+
Sbjct: 416 VHGRVVKAGL 425



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 123/286 (43%), Gaps = 44/286 (15%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR LF+K P RD+V+W  M+ G  +  +   AR LF++MPER+ VSW+A+++ Y++    
Sbjct: 99  ARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYV 158

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI--------TQGLW--------VHSY 188
           KE   +F +M       N      +L A    G I        ++  W        +  Y
Sbjct: 159 KEAKEIFDEMP----CKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGY 214

Query: 189 AKRYHL-----------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            KR  L           E++ +    ++  Y++ G +  A  +FE    +D   W AM+S
Sbjct: 215 VKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVS 274

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G   NG   ++  +FD M     +    ++ A++      K +     LFE M       
Sbjct: 275 GYVQNGMLDEARRVFDGM----PEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC----- 325

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
             +  +  ++   A+ G + +A  F +     +   D+  W A+++
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDR----MPQRDSISWAAIIA 367



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 128/296 (43%), Gaps = 27/296 (9%)

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           +A  LF+  P R  ++W  M+ G      F  AR+LFEKMP R+ VSW+ +++   R  +
Sbjct: 67  SALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRN 126

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE---KNVIL 200
            +    LF QM E            V++  A L    Q  +V   AK    E   KN I 
Sbjct: 127 LRAARLLFDQMPE----------RDVVSWNAMLSGYAQNGYVKE-AKEIFDEMPCKNSIS 175

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
              ++  Y + G +  A  +FE  ++ +  +WN M+ G         +  +FDRM     
Sbjct: 176 WNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM----P 231

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
           +  E ++  +++       + +   LFE  S V  V      +  +V    + GM++EA 
Sbjct: 232 ERDEVSWNTMISGYAQNGELLEAQRLFEE-SPVRDVFT----WTAMVSGYVQNGMLDEAR 286

Query: 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +  +    G+   ++  W A+++      +++    ++  +    ++ ++T +  Y
Sbjct: 287 RVFD----GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGY 338



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/290 (20%), Positives = 123/290 (42%), Gaps = 31/290 (10%)

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
           + D D+V W   +  + + G  ++A  LF  MP R+++SW+A+++       F     LF
Sbjct: 44  ATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLF 103

Query: 152 RQMQEVGMKPNESGLVS---VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
            +M      P    LVS   +++ C     +     +         E++V+   A++  Y
Sbjct: 104 EKM------PTRD-LVSWNVMISGCVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGY 152

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           ++ G+V  A  +F+ +  K++ +WN M++    NG  + +  LF+         ++  + 
Sbjct: 153 AQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFE---------SKADWE 203

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH--YACVVDLLARAGMVEEAEKFIEEK 326
            +   C     V+   N   +   ++   P+ +   +  ++   A+ G + EA++  EE 
Sbjct: 204 LISWNCMMGGYVKR--NRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEES 261

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
                  D   W A++S     G ++   RV+  + E     ++  +  Y
Sbjct: 262 ----PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGY 307



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 36/173 (20%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +  F K ++  +  M   G  P++ T   ++ AC   G ++    +        
Sbjct: 466 MIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY-------- 517

Query: 61  GFGEDPFVVSSLLEFYSLVHKMG-TARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
                         FYS+    G TA +            +T M+D  G+ G  ++A+ L
Sbjct: 518 --------------FYSMTQDYGITANSKH----------YTCMIDLLGRAGRLDDAQNL 553

Query: 120 FEKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
            + MP E +A +W A++ A SRI    E+     +M    M+P+ SG+  +L+
Sbjct: 554 MKNMPFEPDAATWGALLGA-SRIHGNTELGEKAAKMI-FEMEPDNSGMYVLLS 604


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/416 (35%), Positives = 231/416 (55%), Gaps = 39/416 (9%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P+++TFP ++KAC  L      G+ +H+ + K GF  D +V + L+ FY        
Sbjct: 82  GVSPDHFTFPFVLKACARLQT----GLDLHSLLFKLGFDSDVYVQNGLIHFY-------- 129

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                                  G  G  + A + FE+MPER+ VSWS+++A +++    
Sbjct: 130 -----------------------GCCGFLDFALKAFEEMPERDLVSWSSMIACFAKNGFG 166

Query: 145 KEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
            E L+LF++MQ VG +KP+E  ++SV++A + LG +  G W+  +  R  LE  V L TA
Sbjct: 167 YEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIRGFISRNGLEFTVSLGTA 226

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           +VDM+S+CG +  ++ VF+ +  ++   W A+I+G+A++G + ++L +F  M   G QP 
Sbjct: 227 LVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPD 286

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TF  VL  C+H  +V +G ++FE++   YG+EP  EHY C+VDLL RAG++ EA KF+
Sbjct: 287 HVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFV 346

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +   G     ++ +W  LL AC  +  IE+  +V  K+ E+       +VL  N+Y   G
Sbjct: 347 D---GMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHDGDYVLLSNVYGGVG 403

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
              E   VR  + E  + KKPGCS+I VN ++ EF+AGDN H Q   I   + S +
Sbjct: 404 RWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFESIREFLVSMI 459


>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 441

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/399 (35%), Positives = 236/399 (59%), Gaps = 11/399 (2%)

Query: 13  LSVFCYLDM-LDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           L++F ++   L +  +P  Y FP ++K+C  +L P    G  VHAH+VK GF  +PFV S
Sbjct: 47  LTLFYHMQTSLALSLDP--YVFPLVLKSCSAVLCP--QLGTSVHAHIVKMGFLSNPFVAS 102

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAV 129
           +L++ Y     + +AR LFD+ P R+VV W  M+  Y       +A ++F+ M  E N  
Sbjct: 103 ALVDMYGKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVS 162

Query: 130 SWSAIMAAYSRISDFK-EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           +++A++   S + D   + ++ + +M+++G+KPN   L+++L AC  + A+     +H Y
Sbjct: 163 TFNALIYGLSGVKDGSIKAIAFYWKMRQLGLKPNLITLLALLPACVGIAALNLIREIHGY 222

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
           + R  ++++  L + ++D Y +CG + +A +VF G+  +D  AW+++IS  A++G+AK +
Sbjct: 223 SIRNDIDRHPQLGSGLLDAYGRCGCLINASNVFCGMKERDVVAWSSLISAYALHGEAKNA 282

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           LE+F +M  +  QP + TF+AVL  C+HA +  + L+ F  M   Y ++   +HY+C+VD
Sbjct: 283 LEIFRQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQEGYRLQAVSDHYSCLVD 342

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +L+RAG + EA K I+E    +    A  WGALL ACR YG+IE+   V R L E+   +
Sbjct: 343 VLSRAGRLYEAYKVIQEMPVKV---TAKAWGALLGACRTYGEIELAEIVGRALFEIEPDN 399

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
            + +VL   IY   G   EA ++R+ + E G+K  PG S
Sbjct: 400 PANYVLLARIYASVGRYDEAQRIRREMKERGVKVSPGSS 438


>gi|413923546|gb|AFW63478.1| hypothetical protein ZEAMMB73_625657 [Zea mays]
          Length = 489

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 146/422 (34%), Positives = 232/422 (54%), Gaps = 35/422 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y+DML+ G  P++YTFP  +KAC  L  L+  G  + AH+VK GF  D  V +SL+ FY 
Sbjct: 2   YVDMLEAGVRPDSYTFPFALKACAQLAALQE-GRQLQAHIVKLGFQHDEHVQNSLISFYG 60

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              +   AR  FD+                              +  ER A SWSA++AA
Sbjct: 61  KCVEPAMARLAFDRV-----------------------------EAEERTAASWSALLAA 91

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           Y++   + E L  F  M   G +P+ES  VS L+ACAHLGA   G  +H    R     N
Sbjct: 92  YTKAGLWGECLESFGAMVLDGWRPDESSTVSALSACAHLGAFDVGRSLHCALLRNTARLN 151

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
            I+ T++VDMY+KCG +  A +VF+ + +K+A  ++AM+SG+A++GD +K+L++FD MV+
Sbjct: 152 TIMQTSLVDMYAKCGSIEKAAAVFDAMDDKNAWTYSAMLSGLALHGDGRKALQVFDAMVR 211

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
               P   T+V VL  C+ A ++ DGL  F+ M   + V P  ++Y C+VDL+ARAG ++
Sbjct: 212 ERHAPDAATYVGVLNACSRAGLLEDGLRCFDRMRLEHNVAPNAQYYGCMVDLMARAGRLD 271

Query: 318 EAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +A   I    G +  G  +  W +LL+ACRI+G +++  R  ++L  +G  +   +V+  
Sbjct: 272 DARALI----GSMSTGPTDTAWRSLLNACRIHGDLDLAERALQELRRLGAANAGDYVIVA 327

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           +++  A     A ++R    + G+ + PG S +EV G +  F++ D  H +  +IY ++H
Sbjct: 328 DMHARAKDWAAAAQLRTEAVDWGLAQSPGVSAVEVRGELHRFVSQDRSHPRTSDIYEMLH 387

Query: 437 SF 438
             
Sbjct: 388 QM 389



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 20/243 (8%)

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           ++  M E G++P+       L ACA L A+ +G  + ++  +   + +  +  +++  Y 
Sbjct: 1   MYVDMLEAGVRPDSYTFPFALKACAQLAALQEGRQLQAHIVKLGFQHDEHVQNSLISFYG 60

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMN--GDAKKSLELFDRMVKSGTQPTETTF 267
           KC     A   F+ +  ++  A +      A    G   + LE F  MV  G +P E++ 
Sbjct: 61  KCVEPAMARLAFDRVEAEERTAASWSALLAAYTKAGLWGECLESFGAMVLDGWRPDESST 120

Query: 268 VAVLTTCTHAKMVRDGLN----LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           V+ L+ C H      G +    L  N + +  +         +VD+ A+ G +E+A    
Sbjct: 121 VSALSACAHLGAFDVGRSLHCALLRNTARLNTI-----MQTSLVDMYAKCGSIEKAAAVF 175

Query: 324 EEKMGGLGGGDANVW--GALLSACRIYGKIEVGNRVWRKLA-EMGITDFSTHVLSYNIYK 380
           +         D N W   A+LS   ++G      +V+  +  E    D +T+V   N   
Sbjct: 176 DAM------DDKNAWTYSAMLSGLALHGDGRKALQVFDAMVRERHAPDAATYVGVLNACS 229

Query: 381 EAG 383
            AG
Sbjct: 230 RAG 232


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/448 (33%), Positives = 237/448 (52%), Gaps = 9/448 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ Y   + P  S+  Y  +   G  P+++TF   I A             +H+   + 
Sbjct: 46  LIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFN-FIFAASASFSSARPLRLLHSQFFRS 104

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F  ++L+  Y+ +  +  AR +FD+   RDV  W  M+ GY + GD + A ELF
Sbjct: 105 GFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELF 164

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           + MP +N  SW+ +++ +S+  ++ E L +F  M+ +  +KPN   +VSVL ACA+LG +
Sbjct: 165 DSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGEL 224

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISG 238
             G  +  YA+      N+ +  A ++MYSKCG +  A  +FE + N ++  +WN+MI  
Sbjct: 225 EIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGS 284

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G   ++L LF +M++ G +P   TFV +L  C H  MV  G  LF++M  V+ + P
Sbjct: 285 LATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISP 344

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL R G ++EA   I+         DA VWG LL AC  +G +E+     
Sbjct: 345 KLEHYGCMIDLLGRVGKLQEAYDLIKTMP---MKPDAVVWGTLLGACSFHGNVEIAEIAS 401

Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCS-VIEVNGVVE 416
             L ++  T+    V+  NIY     WD    ++RKL+ +  M K  G S  +EV   V 
Sbjct: 402 EALFKLEPTNPGNCVIMSNIYAANEKWD-GVLRMRKLMKKETMTKAAGYSYFVEVGVDVH 460

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +F   D  H ++ EIY+V+    +   L
Sbjct: 461 KFTVEDKSHPRSYEIYQVLEEIFRRMKL 488



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 46/272 (16%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR+LF+         ++ ++ AY       E + L+  +   G++P+      +  A A 
Sbjct: 28  ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 87

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             +      +HS   R   E +    T ++  Y+K G +  A  VF+ +S +D   WNAM
Sbjct: 88  FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 147

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G    GD K ++ELFD M +       T++  V++  +      + L +F  M     
Sbjct: 148 ITGYQRRGDMKAAMELFDSMPRKNV----TSWTTVISGFSQNGNYSEALKMFLCMEKDKS 203

Query: 296 VEP----------------------QLEHYA-------------CVVDLLARAGMVEEAE 320
           V+P                      +LE YA               +++ ++ GM++ A+
Sbjct: 204 VKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAK 263

Query: 321 KFIEEKMGGLGGGDANV--WGALLSACRIYGK 350
           +  EE      G   N+  W +++ +   +GK
Sbjct: 264 RLFEEL-----GNQRNLCSWNSMIGSLATHGK 290


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 238/448 (53%), Gaps = 9/448 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ Y   + P  S+  Y  +   G  P+++TF  +  A           + +H+   + 
Sbjct: 53  LIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRL-LHSQFFRS 111

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F  ++L+  Y+ +  +  AR +FD+   RDV  W  M+ GY + GD + A ELF
Sbjct: 112 GFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELF 171

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           + MP +N  SW+ +++ +S+  ++ E L +F  M+ +  +KPN   +VSVL ACA+LG +
Sbjct: 172 DSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGEL 231

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISG 238
             G  +  YA+      N+ +  A ++MYSKCG +  A  +FE + N ++  +WN+MI  
Sbjct: 232 EIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGS 291

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G   ++L LF +M++ G +P   TFV +L  C H  MV  G  LF++M  V+ + P
Sbjct: 292 LATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISP 351

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL R G ++EA   I+         DA VWG LL AC  +G +E+     
Sbjct: 352 KLEHYGCMIDLLGRVGKLQEAYDLIKTMP---MKPDAVVWGTLLGACSFHGNVEIAEIAS 408

Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCS-VIEVNGVVE 416
             L ++  T+    V+  NIY     WD    ++RKL+ +  M K  G S  +EV   V 
Sbjct: 409 EALFKLEPTNPGNCVIMSNIYAANEKWD-GVLRMRKLMKKETMTKAAGYSYFVEVGVDVH 467

Query: 417 EFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
           +F   D  H ++ EIY+V+    +   L
Sbjct: 468 KFTVEDKSHPRSYEIYQVLEEIFRRMKL 495



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 46/272 (16%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR+LF+         ++ ++ AY       E + L+  +   G++P+      +  A A 
Sbjct: 35  ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 94

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             +      +HS   R   E +    T ++  Y+K G +  A  VF+ +S +D   WNAM
Sbjct: 95  FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 154

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G    GD K ++ELFD M +       T++  V++  +      + L +F  M     
Sbjct: 155 ITGYQRRGDMKAAMELFDSMPRKNV----TSWTTVISGFSQNGNYSEALKMFLCMEKDKS 210

Query: 296 VEP----------------------QLEHYA-------------CVVDLLARAGMVEEAE 320
           V+P                      +LE YA               +++ ++ GM++ A+
Sbjct: 211 VKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAK 270

Query: 321 KFIEEKMGGLGGGDANV--WGALLSACRIYGK 350
           +  EE      G   N+  W +++ +   +GK
Sbjct: 271 RLFEEL-----GNQRNLCSWNSMIGSLATHGK 297


>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g47530-like [Glycine max]
          Length = 579

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 233/437 (53%), Gaps = 37/437 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIR    ++ P+  +  Y DM   G   +  +    +K+C+    L   G+ VH ++ K 
Sbjct: 75  MIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSSFAVKSCIRFLYLPG-GVQVHCNIFKD 133

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  +++++++ YSL  + G A  +FD+                             
Sbjct: 134 GHQWDTLLLTAVMDLYSLCQRGGDACKVFDE----------------------------- 164

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK--PNESGLVSVLTACAHLGA 178
             MP R+ V+W+ +++   R +  ++ LSLF  MQ    K  P++   + +L ACAHL A
Sbjct: 165 --MPHRDTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNA 222

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +H Y         + L  +++ MYS+CG +  A  VF+G+ NK+  +W+AMISG
Sbjct: 223 LEFGERIHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISG 282

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +AMNG  ++++E F+ M++ G  P + TF  VL+ C+++ MV +G++ F  MS  +GV P
Sbjct: 283 LAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVTP 342

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            + HY C+VDLL RAG++++A + I   M  +   D+ +W  LL ACRI+G + +G RV 
Sbjct: 343 NVHHYGCMVDLLGRAGLLDKAYQLI---MSMVVKPDSTMWRTLLGACRIHGHVTLGERVI 399

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
             L E+   +   +VL  NIY  AG   +  +VRKL+    ++  PGCS IE+ G V EF
Sbjct: 400 GHLIELKAQEAGDYVLLLNIYSSAGHWEKVAEVRKLMKNKSIQTTPGCSTIELKGAVHEF 459

Query: 419 LAGDNRHAQAGEIYRVI 435
           +  D  H++  EIY  +
Sbjct: 460 VVDDVSHSRNREIYETL 476



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 127/295 (43%), Gaps = 37/295 (12%)

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
           G + D   ++  F ++       ++ ++ A S     ++ L L+R M+  G+  +     
Sbjct: 49  GPLQDASYSQRFFGQLSHPLVSHYNTMIRACSMSDSPQKGLLLYRDMRRRGIAADPLSSS 108

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
             + +C     +  G+ VH    +   + + +L TAV+D+YS C     A  VF+ + ++
Sbjct: 109 FAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVFDEMPHR 168

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSG--TQPTETTFVAVLTTCTHAKMV----- 280
           D  AWN MIS    N   + +L LFD M  S    +P + T + +L  C H   +     
Sbjct: 169 DTVAWNVMISCCIRNNRTRDALSLFDVMQGSSYKCEPDDVTCLLLLQACAHLNALEFGER 228

Query: 281 ----------RDGLNLFENMSAVYGVEPQLEH---------------YACVVDLLARAGM 315
                     RD LNL  ++ ++Y     L+                ++ ++  LA  G 
Sbjct: 229 IHGYIMERGYRDALNLCNSLISMYSRCGCLDKAYEVFKGMGNKNVVSWSAMISGLAMNGY 288

Query: 316 VEEAEKFIEE--KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA-EMGIT 367
             EA +  EE  ++G L   D   +  +LSAC   G ++ G   + +++ E G+T
Sbjct: 289 GREAIEAFEEMLRIGVL--PDDQTFTGVLSACSYSGMVDEGMSFFHRMSREFGVT 341


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 226/415 (54%), Gaps = 35/415 (8%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  M+    EP+++T+  ++KAC     L N GM +H  ++K G G D FV ++L     
Sbjct: 472 FASMIHSRMEPDDFTYGSVLKACAGRQAL-NTGMEIHTRIIKSGMGFDSFVGAAL----- 525

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                     VD Y K G  E A ++ ++  ++  VSW+AI++ 
Sbjct: 526 --------------------------VDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISG 559

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +S +   ++    F +M E+G+ P+     +VL  CA+L  +  G  +H+   +  L+ +
Sbjct: 560 FSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSD 619

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + + +VDMYSKCG++  +  +FE   N+D   WNAM+ G A +G  +++L+LF+ M  
Sbjct: 620 VYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQL 679

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
              +P   TFV+VL  C H  +V  GL+ F+ M + YG++PQ EHY+C+VD+L R+G ++
Sbjct: 680 VNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRID 739

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA   + +KM      DA +W  LLS C+I+G +EV  +  R L ++   D S  VL  N
Sbjct: 740 EALNLV-QKMP--FEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSN 796

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           IY +AG     +++RK++    +KK+PGCS IE+   V  FL GD  H +  EIY
Sbjct: 797 IYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHPRDEEIY 851



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 154/293 (52%), Gaps = 4/293 (1%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           TF  + + C     L N G   HA ++  GF    FV + L++ Y     +  A  +FDK
Sbjct: 51  TFSHIYQECSKQNSL-NPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDK 109

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
              RDVV++ +++ GY   G+ + AR+ F +MPER+ VSW+++++ + +  + ++ + +F
Sbjct: 110 MYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVF 169

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            +M   G+  + + L  VL AC  L     G+ VH    ++  + +V+  +A++ MY+KC
Sbjct: 170 LEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKC 229

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
             +  +LSVF  +  K+  +W+AMI+G   N    + LELF  M   G   +++ + ++ 
Sbjct: 230 KRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLF 289

Query: 272 TTCTHAKMVRDGLNLFEN-MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
            +C     +R G  L  + + + +G +  +      +D+ A+ G + +A+K +
Sbjct: 290 RSCAALSALRLGKELHSHALKSAFGSDIIVG--TATLDMYAKCGRMADAQKVL 340



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 170/371 (45%), Gaps = 45/371 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G +Q +     +  + +M  +G   +   +  L ++C  L  L   G  +H+H +K 
Sbjct: 253 MIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALR-LGKELHSHALKS 311

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            FG D                               ++  T  +D Y K G   +A+++ 
Sbjct: 312 AFGSD-------------------------------IIVGTATLDMYAKCGRMADAQKVL 340

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MP+ +  S++AI+  Y+R     + L  F+ + + G+  +E  L   L ACA +    
Sbjct: 341 SSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDL 400

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  VH  A +     N+ +A A++DMY KC  +  A  +F+ +  +DA +WNA+I+   
Sbjct: 401 EGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACE 460

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQ 299
            NG+ +++L  F  M+ S  +P + T+ +VL  C   + +  G+ +    + +  G +  
Sbjct: 461 QNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSF 520

Query: 300 LEHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +   A +VD+  + GM+E+A+K     E+K           W A++S   +  + E  ++
Sbjct: 521 VG--AALVDMYCKCGMIEKADKIHDRTEQKT-------MVSWNAIISGFSLLQQSEDAHK 571

Query: 357 VWRKLAEMGIT 367
            + ++ EMG+ 
Sbjct: 572 FFSRMLEMGVN 582



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 153/325 (47%), Gaps = 29/325 (8%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++     ++D YGK      A +LF+ M  R+AVSW+AI+AA  +  + +E L+ F  M 
Sbjct: 417 NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMI 476

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
              M+P++    SVL ACA   A+  G+ +H+   +  +  +  +  A+VDMY KCG + 
Sbjct: 477 HSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIE 536

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            A  + +    K   +WNA+ISG ++   ++ + + F RM++ G  P   T+ AVL TC 
Sbjct: 537 KADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCA 596

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYAC--VVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           +   V  G  +    + +   E Q + Y C  +VD+ ++ G +++++   E+        
Sbjct: 597 NLATVGLGKQIH---AQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKA----PNR 649

Query: 334 DANVWGALLS----------ACRIYGKIEVGN---------RVWRKLAEMGITDFSTHVL 374
           D   W A+L           A +++  +++ N          V R  A MG+ D   H  
Sbjct: 650 DFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYF 709

Query: 375 SYNIYKEAGWDMEANKVRKLISETG 399
              +  E G D ++     ++   G
Sbjct: 710 DV-MLSEYGLDPQSEHYSCMVDILG 733



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 165/355 (46%), Gaps = 43/355 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLE--NFGMFVHAHVV 58
           +I G++Q    + S+  +L+M   G   +  +   ++KAC   G LE  + G+ VH  VV
Sbjct: 152 VISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKAC---GALEECDMGVQVHGLVV 208

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           KFGF                               D DVVT + ++  Y K    +++  
Sbjct: 209 KFGF-------------------------------DCDVVTGSALLGMYAKCKRLDDSLS 237

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
           +F ++PE+N VSWSA++A   +     E L LF++MQ VG+  ++S   S+  +CA L A
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSA 297

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G  +HS+A +     ++I+ TA +DMY+KCG +  A  V   +      ++NA+I G
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE- 297
            A +    ++L+ F  ++K+G    E T    L  C   +   +G  +  +  AV  +  
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQV--HGLAVKSISM 415

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
             +     ++D+  +   + EA    +     +   DA  W A+++AC   G  E
Sbjct: 416 SNICVANAILDMYGKCKALAEASDLFDM----MERRDAVSWNAIIAACEQNGNEE 466


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 140/412 (33%), Positives = 229/412 (55%), Gaps = 20/412 (4%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
             P+++ F  L+KAC  LG +++ G  VH H +   +  D  V SSL++ Y+    + +A
Sbjct: 38  LRPDDFVFSALVKACANLGSIDH-GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSA 96

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           +A+FD    ++ ++WT MV GY K G  E A ELF  +P +N  SW+A+++ + +     
Sbjct: 97  KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGL 156

Query: 146 EVLSLFRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           E  S+F +M+   +   +   L S++ ACA+L A   G  VH                A+
Sbjct: 157 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVH--------------GNAL 202

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY+KC  V +A  +F  + ++D  +W ++I G+A +G A+K+L L+D MV  G +P E
Sbjct: 203 IDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNE 262

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFV ++  C+H   V  G  LF++M+  YG+ P L+HY C++DLL R+G+++EAE  I 
Sbjct: 263 VTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIH 322

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL-AEMGITDFSTHVLSYNIYKEAG 383
                    D   W ALLSAC+  G+ ++G R+   L +   + D ST++L  NIY  A 
Sbjct: 323 TMP---FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASAS 379

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              + ++ R+ + E  ++K PG S +EV    E F AG+  H    +I+R++
Sbjct: 380 LWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 431



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 80/131 (61%), Gaps = 1/131 (0%)

Query: 123 MPERNAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
           MP R+ ++W++++ A ++ +   K +          G++P++    +++ ACA+LG+I  
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  VH +        + ++ +++VDMY+KCG ++SA +VF+ I  K+  +W AM+SG A 
Sbjct: 61  GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 242 NGDAKKSLELF 252
           +G  +++LELF
Sbjct: 121 SGRKEEALELF 131


>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/486 (32%), Positives = 250/486 (51%), Gaps = 69/486 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR  M       ++  YL + ++GF  +NYTFP L+KA   +      G  +H   +K 
Sbjct: 21  IIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICA-SKIGFALHGQTIKT 79

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVD--------------- 105
           GF    FV ++L+  Y  +H +G A  +F+  P +D++ W +M+D               
Sbjct: 80  GFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASNAQMDYASNLF 139

Query: 106 ----------------GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                           GY   G+   AR +F+ M  R+ VSW+++++AY R  D ++ L+
Sbjct: 140 NSMPLKDISSFNIMISGYSTRGEAMLARSIFDSMEVRDFVSWNSMISAYIRAGDMEKGLA 199

Query: 150 LFRQM------------------QEVGMK-------------PNESGLVSVLTACAHLGA 178
           LFR+M                  +  GM              P+   + SVL+ C HLG+
Sbjct: 200 LFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPDYLTVTSVLSTCGHLGS 259

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           +  G+ +H YA    L  +  + TA++DMYSKCG +   L VF     KD   WNA+IS 
Sbjct: 260 LGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALISA 319

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A++G    +L++F +M K+  QP + TF+ ++  C+H+ +V++G  LF +M   +G+ P
Sbjct: 320 LALHGHGYAALKVFGKMRKNHIQPDDITFIGIINACSHSGLVQEGCQLFVSMQEDFGISP 379

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C+V+LL R+G +  A + IE      G    ++ GALLSAC IY  +E G RV 
Sbjct: 380 KLEHYGCMVNLLGRSGHLALALQVIETMPFEPG---ESILGALLSACIIYQDLETGERVI 436

Query: 359 RKLAEMG--ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             +      ++D    + S N+Y   G   EAN+ R++++ TG+ K  G SVIEV+G  +
Sbjct: 437 ELVCSKAHYLSDGELMMFS-NLYASCGNWEEANRWREMMNSTGIVKTAGYSVIEVSGRFQ 495

Query: 417 EFLAGD 422
           +FLAG+
Sbjct: 496 KFLAGE 501



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 57/133 (42%)

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           +P      W+ I+     + +  + +  + ++QE+G   +      +L A   + A   G
Sbjct: 10  LPSSEVKKWNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIG 69

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             +H    +     +  + TA+V+MY     +  A  VFE +  KD  AWN+M+   A N
Sbjct: 70  FALHGQTIKTGFCAHAFVQTALVNMYGNLHCIGDAFKVFEIMPVKDLIAWNSMLDAYASN 129

Query: 243 GDAKKSLELFDRM 255
                +  LF+ M
Sbjct: 130 AQMDYASNLFNSM 142


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 231/439 (52%), Gaps = 39/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +   P+ +V  Y  M   G  P+  T   ++ AC  LG L+  G+ +H    + 
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDK-GIMLHEFADRT 426

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V +SL++ YS                               K    + A E+F
Sbjct: 427 GLTSYVIVANSLIDMYS-------------------------------KCRCIDKALEVF 455

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++P +N +SW++I+          E L  F+QM  + +KPN   LVSVL+ACA +GA++
Sbjct: 456 HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALS 514

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H++A R  L  +  L  A++DMY +CG +  A + F     KD  +WN +++G A
Sbjct: 515 CGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYA 573

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G    ++ELF +M++S   P E TF ++L  C+ + MV DGL  FE+M   + + P L
Sbjct: 574 QQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNL 633

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HYA VVDLL RAG +E+A +FI +KM      D  +WGALL+ACRIY  +E+G    + 
Sbjct: 634 KHYASVVDLLGRAGRLEDAYEFI-KKMP--IDPDPAIWGALLNACRIYQNVELGELAAQH 690

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + EM       ++L  N+Y ++G WD E  +VRK++ E  +   PGCS +EV G V  FL
Sbjct: 691 IFEMDTKSVGYYILLCNLYADSGKWD-EVARVRKIMRENRLTVDPGCSWVEVAGQVHAFL 749

Query: 420 AGDNRHAQAGEIYRVIHSF 438
            GD+ H Q  EI  V+  F
Sbjct: 750 TGDDFHPQIKEINAVLEGF 768



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 137/288 (47%), Gaps = 32/288 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY +A +   ++  Y  ML +G  P+ YTFP +++ C  L  L   G  VH HV+++
Sbjct: 166 LVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR-GREVHLHVIRY 224

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  VV++L+  Y                                K GD  +AR +F
Sbjct: 225 GFESDVDVVNALITMYV-------------------------------KCGDIFSARLVF 253

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP R+ +SW+A+++ Y       E L LF  M+E  + P+   + SV++AC  LG   
Sbjct: 254 DRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDER 313

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y  +      V +  +++ M+S  G    A  VF  +  KD  +W AMISG  
Sbjct: 314 LGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYE 373

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
            NG  +K++E +  M   G  P E T  +VL+ C    ++  G+ L E
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE 421



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 146/295 (49%), Gaps = 44/295 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY + +     +  +  M +   +P+  T   +I AC  LG  E  G  VH +V+K 
Sbjct: 267 MISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD-ERLGREVHGYVIKT 325

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V +SL++ +S V                               G ++ A  +F
Sbjct: 326 GFVAEVSVNNSLIQMHSSV-------------------------------GCWDEAEMVF 354

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM  ++ VSW+A+++ Y +    ++ +  +  M+  G+ P+E  + SVL+ACA LG + 
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ +H +A R  L   VI+A +++DMYSKC  +  AL VF  I NK+  +W ++I G+ 
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGL 284
           +N  + ++L  F +M+ S  +P   T V+VL+ C            HA  +R GL
Sbjct: 475 LNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGL 528



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/168 (33%), Positives = 89/168 (52%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           + + GD   A  +F KM ER+  SW+ ++  Y++   F E L+L+ +M  VG++P+    
Sbjct: 139 FVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTF 198

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
             VL  C  L  + +G  VH +  RY  E +V +  A++ MY KCG + SA  VF+ +  
Sbjct: 199 PCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPR 258

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           +D  +WNAMISG   N    + L LF  M +    P   T  +V++ C
Sbjct: 259 RDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISAC 306



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%)

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           D ++ L     MQE+ +   E   +++L  C    A ++G  VHSY  +      V L  
Sbjct: 74  DLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGN 133

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++ M+ + G +  A  VF  ++ +D  +WN ++ G A  G   ++L L+ RM+  G +P
Sbjct: 134 ALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 263 TETTFVAVLTTC 274
              TF  VL TC
Sbjct: 194 DVYTFPCVLRTC 205


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/423 (36%), Positives = 231/423 (54%), Gaps = 23/423 (5%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG---EDPFVVSSLLEFYSLVHK 81
           G+  NN  +P L     ++       +   A +V F       D  + SSL   ++LV K
Sbjct: 165 GYVRNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSL---HALVVK 221

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMG--DFENARELFEKMPERNAVSWSAIMAAYS 139
            G          D D     TM+D Y K G  D   AR++F+ M E++ VSW++++A Y+
Sbjct: 222 TGL---------DGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYA 271

Query: 140 RISDFKEVLSLFRQMQEVG--MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +     + L L+R+M  V   +K N   L ++L ACAH G I  G  +H+   R  LE+N
Sbjct: 272 QNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEEN 331

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           V + T+VVDMYSKCG V  A   F+ I  K+  +W+AMI+G  M+G  +++L++F+ M +
Sbjct: 332 VYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCR 391

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
           SG  P   TF++VL  C+HA ++  G   +  M   +G+EP +EHY C+VDLL RAG ++
Sbjct: 392 SGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLD 451

Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377
           EA   I+E        DA +WGALLSACRI+  +E+     ++L E+  T+   +VL  N
Sbjct: 452 EAYGLIKEMK---VKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSN 508

Query: 378 IYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHS 437
           IY EAG   +  ++R L+   G++K PG S +E+ G    F  GD  H Q  EIY  +  
Sbjct: 509 IYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGK 568

Query: 438 FLK 440
            L+
Sbjct: 569 LLE 571



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 121/283 (42%), Gaps = 40/283 (14%)

Query: 50  GMFVHAHVVKFG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG 108
           G  +H   ++ G F  DPF  S+LL  Y+   +   AR  FD+ P  + V  T M  GY 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGY- 166

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP--NESGL 166
                            RN + + +              L+LFR++   G     +E+  
Sbjct: 167 ----------------VRNNLVYPS--------------LALFRKLIASGSATAVDEAAA 196

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH--VHSALSVFEGI 224
           +   +A A +        +H+   +  L+ +  +   ++D Y+K G   + +A  VF+ +
Sbjct: 197 LVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM 256

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRM--VKSGTQPTETTFVAVLTTCTHAKMVRD 282
             KD  +WN+MI+  A NG +  +L L+ +M  V    +    T  A+L  C HA  ++ 
Sbjct: 257 -EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQT 315

Query: 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
           G     N     G+E  +     VVD+ ++ G VE A K  ++
Sbjct: 316 G-KCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQK 357


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 135/393 (34%), Positives = 219/393 (55%), Gaps = 5/393 (1%)

Query: 39  ACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVV 98
           AC  +G LE  G  VH+  VK G   + +V ++L+  Y     M   R +F++   +D V
Sbjct: 427 ACSHIGALET-GRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 99  TWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG 158
           +W + +    +    E+AR +F+ M  R+ VSW+ I++AY++     E +  F+ M    
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEH 545

Query: 159 MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218
            KPN   L  +L+ C  LG+   G  +H+ A ++ ++  +I+A A++ MY KCG   S  
Sbjct: 546 EKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSH- 604

Query: 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278
            VF+ +  +D   WN  I+G A +G  ++++++++ M   G  P E TFV +L  C+HA 
Sbjct: 605 KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAG 664

Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
           +V +G   F++MS  YG+ P LEHYAC+VDLL R G V+ AEKFI +        D  +W
Sbjct: 665 LVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMP---IEPDTVIW 721

Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398
            ALL AC+I+   E+G R   KL     ++   +V+  NIY   G  +E  ++RK++ + 
Sbjct: 722 SALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQR 781

Query: 399 GMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
           G+ K+PGCS +++   V  F+ GD +H +  EI
Sbjct: 782 GVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEI 814



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 137/276 (49%), Gaps = 17/276 (6%)

Query: 19  LDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPF----VVSSLLE 74
           +   D   E N YT+  +I A      L + G    A  V   +G DP       ++LL 
Sbjct: 279 IKFFDGMVERNEYTWSTMIAA------LSHGGRIDAAIAV---YGRDPVKSIPSQTALLT 329

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
             +   ++  AR LF++ PD  VV+W  M+ GY + G  + A+ELF++MP RN +SW+ +
Sbjct: 330 GLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGM 389

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           +A Y++    +E L L + +   GM P+ S L S   AC+H+GA+  G  VHS A +   
Sbjct: 390 IAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGC 449

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           + N  +  A++ MY KC ++     VF  +  KD  +WN+ I+ +  N   + +  +FD 
Sbjct: 450 QFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDN 509

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           M+         ++  +++    A+   + +  F+ M
Sbjct: 510 MLSRDV----VSWTTIISAYAQAERGDEAVEFFKTM 541



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 13/290 (4%)

Query: 39  ACVILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDV 97
           A ++L      G  + A  V  G  E   V  ++++  Y     +  AR LFD  P RDV
Sbjct: 98  ATILLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDV 157

Query: 98  VTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157
            +W +MV GY       +A  LF++MP+RN V+W+ +++ Y RI    +   +FR M   
Sbjct: 158 TSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHE 217

Query: 158 GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-CGHVHS 216
           G  P++S   SVL+A   L  +     +     +   E +V++ T+++++Y++    +  
Sbjct: 218 GASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDI 277

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR-MVKSGTQPTETTFVAVLTTCT 275
           A+  F+G+  ++   W+ MI+ ++  G    ++ ++ R  VKS   P++T  +  L  C 
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKS--IPSQTALLTGLARCG 335

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
                R    LFE +      +P +  +  ++    + GMV+EA++  + 
Sbjct: 336 RITEARI---LFEQIP-----DPIVVSWNAMITGYMQNGMVDEAKELFDR 377



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 43/183 (23%)

Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
            ++G    ARE+F+ MP R+ ++W+++++AY      ++   LF                
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF---------------- 87

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
                     AI+ G              NV  AT ++  Y++ G V  A  VF+G+  +
Sbjct: 88  ---------DAISGG--------------NVRTATILLSGYARLGRVLDARRVFDGMPER 124

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           +  AWNAM+S    NGD   +  LFD M         T++ +++T   H++ + D  NLF
Sbjct: 125 NTVAWNAMVSCYVQNGDITMARRLFDAMPSRDV----TSWNSMVTGYCHSRQMVDAWNLF 180

Query: 288 ENM 290
           + M
Sbjct: 181 KQM 183



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 8/195 (4%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  AR +FD  P RD++ W +M+  Y   G  E+AR LF+ +   N  + + +++ Y+R
Sbjct: 48  RLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYAR 107

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
           +    +   +F  M E     N     ++++     G IT    +          ++V  
Sbjct: 108 LGRVLDARRVFDGMPE----RNTVAWNAMVSCYVQNGDITMARRLFDAMP----SRDVTS 159

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
             ++V  Y     +  A ++F+ +  ++   W  MISG        K  ++F  M   G 
Sbjct: 160 WNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGA 219

Query: 261 QPTETTFVAVLTTCT 275
            P ++ F +VL+  T
Sbjct: 220 SPDQSNFASVLSAVT 234


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 142/432 (32%), Positives = 233/432 (53%), Gaps = 36/432 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y+Q      +V  +  +L  G +P++ TF  ++  C     LE  G +V + +++ 
Sbjct: 479 MITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALE-LGKWVQSLIIRA 537

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  + ++L+  +                                  GD  +A  LF
Sbjct: 538 GFESDLHIRNALVSMFV-------------------------------NCGDLMSAMNLF 566

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPER+ VSW+ I+A + +  + +     F+ MQE G+KP++     +L ACA   A+T
Sbjct: 567 NDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALT 626

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +H+      L+ +V++ T ++ MY+KCG +  A  VF  +  K+  +W +MI+G A
Sbjct: 627 EGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYA 686

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  K++LELF +M + G +P   TFV  L+ C HA ++++GL+ FE+M   + +EP++
Sbjct: 687 QHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKD-FNIEPRM 745

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDL  RAG++ EA +FI +        D+ +WGALL AC+++  +E+  +V +K
Sbjct: 746 EHYGCMVDLFGRAGLLHEAVEFINKMQ---VKPDSRLWGALLGACQVHLDVELAEKVAQK 802

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
             E+   D   +V+  NIY  AG   E  K+RK++ + G+ KKPG S IEV+G V  F +
Sbjct: 803 KLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCS 862

Query: 421 GDNRHAQAGEIY 432
            D  H Q  EI+
Sbjct: 863 DDKTHPQIEEIH 874



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 194/403 (48%), Gaps = 40/403 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY+Q    + +   +  M+  G +P+ YTF  ++ AC     ++  G          
Sbjct: 176 LLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG---------- 225

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                        E +SL+   G          D D+   T +++ + K G  ++A ++F
Sbjct: 226 -------------ELFSLILNAGW---------DTDLFVGTALINMHIKCGGVDDALKVF 263

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +P R+ ++W++++   +R   FK+  +LF+ M+E G++P++   VS+L AC H  A+ 
Sbjct: 264 NNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALE 323

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           QG  VH+  K   L+  + + TA++ MY+KCG +  AL VF  +  ++  +W AMI+G A
Sbjct: 324 QGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN-MSAVYGVEPQ 299
            +G  +++   F++M++SG +P   TF+++L  C+    ++ G  + +  + A Y  + +
Sbjct: 384 QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDR 443

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           +     ++ + A+ G + +A    E     +   +   W A+++A   + K +     ++
Sbjct: 444 VR--TALLSMYAKCGSLMDARNVFER----ISKQNVVAWNAMITAYVQHEKYDNAVATFQ 497

Query: 360 KLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
            L + GI  D ST     N+ K          V+ LI   G +
Sbjct: 498 ALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFE 540



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 142/271 (52%), Gaps = 5/271 (1%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D+  W  ++  Y K G+  +A+++F++MP+++  SW+ ++  Y +   ++E   L  QM 
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + G+KP++   V +L ACA    + +G  + S       + ++ + TA+++M+ KCG V 
Sbjct: 198 QDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVD 257

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
            AL VF  +  +D   W +MI+G+A +   K++  LF  M + G QP +  FV++L  C 
Sbjct: 258 DALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN 317

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335
           H + +  G  +   M  V G++ ++     ++ +  + G +E+A     E    + G + 
Sbjct: 318 HPEALEQGKRVHARMKEV-GLDTEIYVGTALLSMYTKCGSMEDA----LEVFNLVKGRNV 372

Query: 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
             W A+++    +G++E     + K+ E GI
Sbjct: 373 VSWTAMIAGFAQHGRMEEAFLFFNKMIESGI 403



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 138/286 (48%), Gaps = 32/286 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G+ Q    + +   +  M++ G EPN  TF  ++ AC     L+  G  +H  ++K 
Sbjct: 378 MIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQ-GRQIHDRIIKA 436

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+  D  V ++LL  Y+                               K G   +AR +F
Sbjct: 437 GYITDDRVRTALLSMYA-------------------------------KCGSLMDARNVF 465

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E++ ++N V+W+A++ AY +   +   ++ F+ + + G+KP+ S   S+L  C    A+ 
Sbjct: 466 ERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALE 525

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WV S   R   E ++ +  A+V M+  CG + SA+++F  +  +D  +WN +I+G  
Sbjct: 526 LGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFV 585

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            +G+ + + + F  M +SG +P + TF  +L  C   + + +G  L
Sbjct: 586 QHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRL 631



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 114/241 (47%), Gaps = 5/241 (2%)

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           +N    +A +   S+     E + +   +    ++ +     S+L  C     +  G  +
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERI 126

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
           H++ K   ++ ++ +   ++ MY+KCG+ +SA  +F+ + +KD  +WN ++ G   +   
Sbjct: 127 HNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRY 186

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
           +++  L ++MV+ G +P + TFV +L  C  AK V  G  LF ++    G +  L     
Sbjct: 187 EEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELF-SLILNAGWDTDLFVGTA 245

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++++  + G V++A K        L   D   W ++++    + + +    +++ + E G
Sbjct: 246 LINMHIKCGGVDDALKVF----NNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 366 I 366
           +
Sbjct: 302 V 302


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 231/439 (52%), Gaps = 39/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +   P+ +V  Y  M   G  P+  T   ++ AC  LG L+  G+ +H    + 
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDK-GIMLHEFADRT 426

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V +SL++ YS                               K    + A E+F
Sbjct: 427 GLTSYVIVANSLIDMYS-------------------------------KCRCIDKALEVF 455

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++P +N +SW++I+          E L  F+QM  + +KPN   LVSVL+ACA +GA++
Sbjct: 456 HRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMI-LSLKPNSVTLVSVLSACARIGALS 514

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H++A R  L  +  L  A++DMY +CG +  A + F     KD  +WN +++G A
Sbjct: 515 CGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS-CEKDVASWNILLTGYA 573

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G    ++ELF +M++S   P E TF ++L  C+ + MV DGL  FE+M   + + P L
Sbjct: 574 QQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNL 633

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HYA VVDLL RAG +E+A +FI +KM      D  +WGALL+ACRIY  +E+G    + 
Sbjct: 634 KHYASVVDLLGRAGRLEDAYEFI-KKMP--IDPDPAIWGALLNACRIYQNVELGELAAQH 690

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + EM       ++L  N+Y ++G WD E  +VRK++ E  +   PGCS +EV G V  FL
Sbjct: 691 IFEMDTKSVGYYILLCNLYADSGKWD-EVARVRKIMRENRLTVDPGCSWVEVAGQVHAFL 749

Query: 420 AGDNRHAQAGEIYRVIHSF 438
            GD+ H Q  EI  V+  F
Sbjct: 750 TGDDFHPQIKEINAVLEGF 768



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 137/288 (47%), Gaps = 32/288 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY +A +   ++  Y  ML +G  P+ YTFP +++ C  L  L   G  VH HV+++
Sbjct: 166 LVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLAR-GREVHLHVIRY 224

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D  VV++L+  Y                                K GD  +AR +F
Sbjct: 225 GFESDVDVVNALITMYV-------------------------------KCGDIFSARLVF 253

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP R+ +SW+A+++ Y       E L LF  M+E  + P+   + SV++AC  LG   
Sbjct: 254 DRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDER 313

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y  +      V +  +++ M+S  G    A  VF  +  KD  +W AMISG  
Sbjct: 314 LGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYE 373

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288
            NG  +K++E +  M   G  P E T  +VL+ C    ++  G+ L E
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHE 421



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 157/330 (47%), Gaps = 56/330 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY + +     +  +  M +   +P+  T   +I AC  LG  E  G  VH +V+K 
Sbjct: 267 MISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGD-ERLGREVHGYVIKT 325

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  +  V +SL++ +S V                               G ++ A  +F
Sbjct: 326 GFVAEVSVNNSLIQMHSSV-------------------------------GCWDEAEMVF 354

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            KM  ++ VSW+A+++ Y +    ++ +  +  M+  G+ P+E  + SVL+ACA LG + 
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G+ +H +A R  L   VI+A +++DMYSKC  +  AL VF  I NK+  +W ++I G+ 
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFEN 289
           +N  + ++L  F +M+ S  +P   T V+VL+ C            HA  +R GL     
Sbjct: 475 LNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGF--- 530

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
                G  P       ++D+  R G +E A
Sbjct: 531 ----DGFLPN-----ALLDMYVRCGRMEPA 551



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 88/166 (53%)

Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
           + GD   A  +F KM ER+  SW+ ++  Y++   F E L+L+ +M  VG++P+      
Sbjct: 141 RFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPC 200

Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
           VL  C  L  + +G  VH +  RY  E +V +  A++ MY KCG + SA  VF+ +  +D
Sbjct: 201 VLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRD 260

Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             +WNAMISG   N    + L LF  M +    P   T  +V++ C
Sbjct: 261 RISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISAC 306



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%)

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           D ++ L     MQE+ +   E   +++L  C    A ++G  VHSY  +      V L  
Sbjct: 74  DLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGN 133

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           A++ M+ + G +  A  VF  ++ +D  +WN ++ G A  G   ++L L+ RM+  G +P
Sbjct: 134 ALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 263 TETTFVAVLTTC 274
              TF  VL TC
Sbjct: 194 DVYTFPCVLRTC 205


>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
 gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09190-like [Cucumis sativus]
          Length = 484

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 139/395 (35%), Positives = 222/395 (56%), Gaps = 5/395 (1%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           S+  +  M +    P+ YTF PL+K+C  L    + G  V + V + GF     +   ++
Sbjct: 91  SLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEY-SLGQCVISEVFRRGFYCFGSIRIGVV 149

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           E Y    KM  A  +FD+   RDVV W  M+ G+ K G+ +    LF +M ER+ VSW+ 
Sbjct: 150 ELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNT 209

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK-RY 192
           I++  ++     E L LF+QM+E G KP+E  +V++L  C+ LGA+  G  +HSYA  + 
Sbjct: 210 IISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKG 269

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           +L     +  +++D Y KCG++  A ++F+ ++ K   +WN +I G A+NG  + +++LF
Sbjct: 270 NLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVVSWNTIILGFALNGKGEFAIDLF 329

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
             M K   +P + TFVAVLT C H+ ++  G  LF +M+  Y ++P+LEH+ C+VDLL R
Sbjct: 330 MEMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGR 389

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
            G VEEA K I+         +A +WGA+L ACR +G +++     ++L  +   +   +
Sbjct: 390 GGCVEEAHKLIKSMP---MQPNATLWGAVLGACRTHGNLKLAEMAVKELISLEPWNSGNY 446

Query: 373 VLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
           VL  N+  E G   E   VR+ + E  +KK PG S
Sbjct: 447 VLLSNMLAEEGRWEEVENVRQWMREKSVKKAPGQS 481


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/403 (35%), Positives = 224/403 (55%), Gaps = 6/403 (1%)

Query: 41  VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKMGTARALFDKSPDRDVVT 99
           ++ G ++N GM   A  V  G  E   V  ++++  Y    +M  AR LF+  P ++V +
Sbjct: 191 MVSGYVQN-GMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS 249

Query: 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
           W TM+ GY + GD   AR  F++MP+R+++SW+AI+A Y++    +E L LF +M+  G 
Sbjct: 250 WNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGE 309

Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
           + N S   S L+ CA + A+  G  VH    +  LE    +  A++ MY KCG++  A  
Sbjct: 310 RLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYI 369

Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279
           VFEGI  K+  +WN MI+G A +G  K++L LF+ M K+G  P + T V VL+ C+H  +
Sbjct: 370 VFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGL 429

Query: 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
           V  G   F +M+  YG+    +HY C++DLL RAG +++A+  ++         DA  WG
Sbjct: 430 VDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM---PFEPDAATWG 486

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399
           ALL A RI+G  E+G +  + + EM   +   +VL  N+Y  +G   +  ++R  + + G
Sbjct: 487 ALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRG 546

Query: 400 MKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF-LKM 441
           +KK PG S +EV   +  F  GD+ H +   IY  +    LKM
Sbjct: 547 VKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKM 589



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 150/333 (45%), Gaps = 49/333 (14%)

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y   +++  AR +FD+ P+RD V+W TM+ GY + G+   A+ LFE+ P R+  +W+A++
Sbjct: 133 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMV 192

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           + Y +     E   +F  M E     N     +++        + Q         R   E
Sbjct: 193 SGYVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYVQCKRMDQA--------RELFE 240

Query: 196 ----KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
               +NV     ++  Y++ G +  A + F+ +  +D+ +W A+I+G A +G  +++L L
Sbjct: 241 AMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHL 300

Query: 252 FDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGL---------------- 284
           F  M + G +   +TF + L+TC            H ++V+ GL                
Sbjct: 301 FVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCK 360

Query: 285 --NLFENMSAVYGV-EPQLEHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGA 340
             N+ +      G+ E ++  +  ++   AR G  +EA    E  K  G+   D  + G 
Sbjct: 361 CGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG- 419

Query: 341 LLSACRIYGKIEVGNRVWRKLAE-MGITDFSTH 372
           +LSAC   G ++ G   +  + +  GIT  S H
Sbjct: 420 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 452



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 16/223 (7%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           + +L  Y    ++  AR LF+   D ++++W  M+ GY K     +AR +F++MPER+ V
Sbjct: 96  NGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEV 155

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+ +++ Y++  +  E   LF           ES +  V T  A +    Q   +    
Sbjct: 156 SWNTMISGYAQNGELLEAQRLF----------EESPVRDVFTWTAMVSGYVQNGMLDEAR 205

Query: 190 KRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
           + +    EKN +   A++  Y +C  +  A  +FE +  ++  +WN MI+G A NGD  +
Sbjct: 206 RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQ 265

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +   FDRM     Q    ++ A++     +    + L+LF  M
Sbjct: 266 ARNFFDRM----PQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 146/310 (47%), Gaps = 42/310 (13%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR LFD+ P+RDVV+W  M+ GY + G  + A+E+F++MP +N++SW+ ++AAY +    
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRI 108

Query: 145 KEVLSLFRQMQE---------VGMKPNESGLVS---VLTACAHLGAITQGLWVHSYAKRY 192
           ++   LF    +         +G     + LV    +         ++    +  YA+  
Sbjct: 109 EDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNG 168

Query: 193 HL-----------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
            L            ++V   TA+V  Y + G +  A  VF+G+  K++ +WNA+I+G   
Sbjct: 169 ELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQ 228

Query: 242 NGDAKKSLELFDRMVKSGTQPTE--TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
                ++ ELF+ M      P +  +++  ++T       +    N F+ M       PQ
Sbjct: 229 CKRMDQARELFEAM------PCQNVSSWNTMITGYAQNGDIAQARNFFDRM-------PQ 275

Query: 300 LE--HYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            +   +A ++   A++G  EEA   F+E K  G    + + + + LS C     +E+G +
Sbjct: 276 RDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG-ERLNRSTFTSTLSTCAEIAALELGKQ 334

Query: 357 VWRKLAEMGI 366
           V  ++ + G+
Sbjct: 335 VHGRVVKAGL 344



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 34/172 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +  F K ++  +  M   G  P++ T   ++ AC   G ++    +        
Sbjct: 385 MIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY-------- 436

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                         FYS+    G            +   +T M+D  G+ G  ++A+ L 
Sbjct: 437 --------------FYSMTQDYGIT---------ANSKHYTCMIDLLGRAGRLDDAQNLM 473

Query: 121 EKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           + MP E +A +W A++ A SRI    E+     +M    M+P+ SG+  +L+
Sbjct: 474 KNMPFEPDAATWGALLGA-SRIHGNTELGEKAAKMI-FEMEPDNSGMYVLLS 523



 Score = 41.2 bits (95), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
           ++ +A  +F+ +  +D  +WNAM+SG A NG  K++ E+FD M    +     ++  +L 
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS----ISWNGMLA 100

Query: 273 TCTHAKMVRDGLNLFEN 289
                  + D   LFE+
Sbjct: 101 AYVQNGRIEDARRLFES 117


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/415 (33%), Positives = 229/415 (55%), Gaps = 36/415 (8%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF----GFGEDPFVVSSLLEFYSLVHK 81
             PN +T+PPL +A           + +  H +KF        D  + ++LL+ ++   +
Sbjct: 138 LRPNAFTYPPLFRAAP-----PALALALATHSIKFLGAHAASCDRVLGAALLDVFARCGR 192

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           + + R +FD+  + D+  W  ++  Y ++     AR++                A  S  
Sbjct: 193 IASCRKVFDRIANPDLPAWNALLSAYARL----RARDV----------------ACASSA 232

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
           +D   +L +F +M  + +KPNE  LV+V+ AC  LGA++ G+W H+YA +  L  N I+A
Sbjct: 233 AD--AILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVA 290

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
           TA+V+MY+ CG +  A  VF   S++D   +NAM+ G+A++G  + +L LFDRM   G  
Sbjct: 291 TALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVP 350

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
               T ++V+  C HA +V +GL+ F+ M   +G+EP +EHY C+VD+L+RAG + +AEK
Sbjct: 351 VDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEK 410

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            I    G     +A ++ +L+ AC I+GK+E+G ++  +L  +   D   HVL  N Y  
Sbjct: 411 LIH---GMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYAT 467

Query: 382 AG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
              WD +A K RK +   G+ K PG S +++NGV+ EFL GD  H  + EIY ++
Sbjct: 468 TNRWD-DAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMV 521



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 105/241 (43%), Gaps = 38/241 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ ML +  +PN  T   +I AC  LG + + G++ H + VK     +  V ++L+E Y+
Sbjct: 240 FVRMLSLAIKPNEITLVAVIGACGELGAVSH-GVWAHTYAVKRRLAVNCIVATALVEMYA 298

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++  A  +F  + DRD   +  M+ G    G    A                     
Sbjct: 299 GCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAA--------------------- 337

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEK 196
                     LSLF +M   G+  +   ++SV+ ACAH G + +GL +       + +E 
Sbjct: 338 ----------LSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEP 387

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           ++     +VDM S+ G ++ A  +  G+    +A  + ++I    ++G     LEL  +M
Sbjct: 388 SIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHG----KLELGKKM 443

Query: 256 V 256
           +
Sbjct: 444 I 444


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 235/440 (53%), Gaps = 44/440 (10%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGF----EPNNYTFPPLIKACVILGPLENFGMFVH 54
           MIR Y  +  P    ++F Y+   D        P+++T+P ++KAC   G    FG  +H
Sbjct: 66  MIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGH-ARFGKQIH 124

Query: 55  AHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFE 114
             V K G G D ++ ++L+  YS+                                G+  
Sbjct: 125 GLVFKSGVGSDRYINNALIHLYSV-------------------------------SGEPN 153

Query: 115 NARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
            A ++F+KMP+R+ VSW++I+  +       E + LF  M E G++PNE  + SVL ACA
Sbjct: 154 LAYKVFDKMPDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACA 213

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
             GA+  G  +HS+ K  +   N  ++TA++DMY+KCG +  AL VF+    KD   W A
Sbjct: 214 DTGALNTGERIHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTA 273

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I+G+A +G   K++E F+ M KS  +  E    AVL+   +A +V +GL  F  +   +
Sbjct: 274 IIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLKK-H 332

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
            ++P ++HY CVVD+L RAG +++AE+FI  KM      DA +W  L+  C+I G +E  
Sbjct: 333 KIKPTIQHYGCVVDMLTRAGRLKDAEEFI-RKMP--IEPDAVLWRTLIWGCKILGDVERS 389

Query: 355 NRVWRKLA--EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412
            R+ R+L    M   D  ++VL  N+Y   G   E  K R+L+ + G+ K P CS IE++
Sbjct: 390 ERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEID 449

Query: 413 GVVEEFLAGDNRHAQAGEIY 432
           GVV EF AGD+RH +A  +Y
Sbjct: 450 GVVHEFTAGDSRHDEATAVY 469



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 21/250 (8%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG------MKPNES 164
           GD   AR +   +   N+  ++ ++ AYS  +D     +LF  MQ          +P+  
Sbjct: 43  GDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHF 102

Query: 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
               VL AC+  G    G  +H    +  +  +  +  A++ +YS  G  + A  VF+ +
Sbjct: 103 TYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKM 162

Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284
            ++D  +W ++I G   N    +++ LF  M+++G +P E T  +VL  C     +  G 
Sbjct: 163 PDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGE 222

Query: 285 NLF-----ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
            +      +N S+   V   L      +D+ A+ G ++ A +  +E +      D  VW 
Sbjct: 223 RIHSFVKEKNFSSNANVSTAL------IDMYAKCGCIDGALEVFDETL----EKDVYVWT 272

Query: 340 ALLSACRIYG 349
           A+++    +G
Sbjct: 273 AIIAGLASHG 282


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/373 (36%), Positives = 220/373 (58%), Gaps = 5/373 (1%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D  + ++++  Y  +  M  AR+LFD+ P RDV++W T+++GY  +GD E    +F++M 
Sbjct: 86  DIVLWNTMVAGYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEML 145

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGL 183
           ERN  SW+ ++  Y++     EVL  F++M + G + PN++ L  VL+ACA LGA   G 
Sbjct: 146 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGK 205

Query: 184 WVHSYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
            VH Y +     K +V +  A++DMY KCG +  A+ VF+GI  +D  +WN MI+G+A +
Sbjct: 206 RVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAH 265

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
           G   ++L+LF  M   G  P + TFV VL  C H  +V DGL  F +M   + + PQ+EH
Sbjct: 266 GHGTEALDLFHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEH 325

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
             CVVDLL+RAG + +A +FI  KM      DA +W  LL A ++Y K++ G    ++L 
Sbjct: 326 CGCVVDLLSRAGFLTQAVEFI-NKMP--VKADAVIWATLLGASKVYKKVDTGELALKELI 382

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
           ++   + +  V+  NIY +AG   +A +++  + +TG KK+ G S IE +  + +F +  
Sbjct: 383 KLEPRNPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGISWIETDDGLVKFYSSG 442

Query: 423 NRHAQAGEIYRVI 435
            +H +  E+ R++
Sbjct: 443 EKHPRTEELQRIL 455



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 36/240 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG-FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           +I+GY Q       +  +  M+D G   PN+ T   ++ AC  LG  + FG  VH +   
Sbjct: 155 LIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFD-FGKRVHKYGEN 213

Query: 60  FGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
            G+ + D  V ++L++ Y     +  A  +F     RD+++W TM++G            
Sbjct: 214 LGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMING------------ 261

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
                           +AA+   +   E L LF +M+  G+ P++   V VL AC H+G 
Sbjct: 262 ----------------LAAHGHGT---EALDLFHEMKNCGISPDKVTFVGVLCACKHMGL 302

Query: 179 ITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           +  GL + +S    + +   +     VVD+ S+ G +  A+     +  K DA  W  ++
Sbjct: 303 VEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLL 362



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 11/170 (6%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           +G +    +A ++F +M E+N V W++++  Y    D       F       + P E  +
Sbjct: 35  FGTLCSMVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYF------DLSP-ERDI 87

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           V   T  A  G I  G  + + +    +  ++V+    V++ Y+  G + +   VF+ + 
Sbjct: 88  VLWNTMVA--GYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEML 145

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTC 274
            ++  +WN +I G A NG   + L  F RMV  G+  P + T   VL+ C
Sbjct: 146 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSAC 195


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 244/439 (55%), Gaps = 36/439 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+RG+++    + ++  Y +M + G +P+N+T+P L+KAC  L  +E  GM VHAH++K 
Sbjct: 102 MMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEE-GMQVHAHILKL 160

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL+  Y                               GK G+      +F
Sbjct: 161 GLENDVFVQNSLISMY-------------------------------GKCGEIGVCCAVF 189

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAI 179
           E+M ER+  SWSA++ A++ +  + + L L   M   G  +  ES LVSVL+AC HLGA+
Sbjct: 190 EQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGAL 249

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VH +  R     NVI+ T++++MY KCG ++  + +F+ ++ K+  +++ MISG+
Sbjct: 250 DLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGL 309

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G  ++ L +F  M++ G +P +  +V VL  C+HA +V++GL  F  M   +G+EP 
Sbjct: 310 AMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPT 369

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY C+VDL+ RAG ++EA + I  K   +   D  +W +LLSA +++  ++ G    +
Sbjct: 370 IQHYGCMVDLMGRAGKIDEALELI--KSMPMEPNDV-LWRSLLSASKVHNNLQAGEIAAK 426

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L ++     S +V+  N+Y +A    +  K R  +   G+ ++PG S++EV   +  F+
Sbjct: 427 QLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 486

Query: 420 AGDNRHAQAGEIYRVIHSF 438
           + D  H Q+  +Y +++  
Sbjct: 487 SQDAGHPQSESVYEMLYQM 505



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 34/255 (13%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           ++ F+        L+K C     +E F    HA ++K G   D F  S+L+         
Sbjct: 24  ELSFKLGEKECVSLLKKC---SNMEEFKQ-SHARILKLGLFGDSFCASNLV--------- 70

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
               AL D         W          G  + A  +F +M E  +  ++ +M  + +  
Sbjct: 71  -ATCALSD---------W----------GSMDYACSIFRQMDELGSFQFNTMMRGHVKDM 110

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           + +E L  +++M E G+KP+     ++L ACA L A+ +G+ VH++  +  LE +V +  
Sbjct: 111 NTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQN 170

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-Q 261
           +++ MY KCG +    +VFE ++ +   +W+A+I+  A  G     L L   M   G  +
Sbjct: 171 SLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWR 230

Query: 262 PTETTFVAVLTTCTH 276
             E+  V+VL+ CTH
Sbjct: 231 AEESILVSVLSACTH 245



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 17/142 (11%)

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQ--------GLWVHSYAKRYHLEKNVILATAV 204
           Q  E+  K  E   VS+L  C+++    Q        GL+  S+        N++   A+
Sbjct: 21  QSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCA-----SNLVATCAL 75

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
            D     G +  A S+F  +    +  +N M+ G   + + +++L  +  M + G +P  
Sbjct: 76  SDW----GSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDN 131

Query: 265 TTFVAVLTTCTHAKMVRDGLNL 286
            T+  +L  C     V +G+ +
Sbjct: 132 FTYPTLLKACARLPAVEEGMQV 153


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 242/435 (55%), Gaps = 8/435 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ G+ ++ + K +V  +  +  +GF P+  T   ++ + V    + N G  +H +V+K 
Sbjct: 223 ILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPS-VGDSEMLNMGRLIHGYVIKQ 281

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  +D  V+S++++ Y     +    +LF++    +       + G  + G  + A E+F
Sbjct: 282 GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMF 341

Query: 121 EKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           E   E+    N VSW++I+A  ++     E L LFR+MQ  G+KPN   + S+L AC ++
Sbjct: 342 ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNI 401

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            A+  G   H +A R HL  NV + +A++DMY+KCG ++ +  VF  +  K+   WN+++
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G +M+G AK+ + +F+ ++++  +P   +F ++L+ C    +  +G   F+ MS  YG+
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGI 521

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P+LEHY+C+V+LL RAG ++EA   I+E        D+ VWGALL++CR+   +++   
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP---FEPDSCVWGALLNSCRLQNNVDLAEI 578

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              KL  +   +  T+VL  NIY   G   E + +R  +   G+KK PGCS I+V   V 
Sbjct: 579 AAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638

Query: 417 EFLAGDNRHAQAGEI 431
             LAGD  H Q  +I
Sbjct: 639 TLLAGDKSHPQIDQI 653



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 6/302 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I    +A     S+  +  M   G  P+++  P L K C  L   +  G  +H      
Sbjct: 87  LIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFK-VGKQIHCVSCVS 145

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV  S+   Y    +MG AR +FD+  D+DVVT + ++  Y + G  E    + 
Sbjct: 146 GLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRIL 205

Query: 121 EKMP----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            +M     E N VSW+ I++ ++R    KE + +F+++  +G  P++  + SVL +    
Sbjct: 206 SEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDS 265

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +  G  +H Y  +  L K+  + +A++DMY K GHV+  +S+F      +AG  NA I
Sbjct: 266 EMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G++ NG   K+LE+F+   +   +    ++ +++  C       + L LF  M  V GV
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQ-VAGV 384

Query: 297 EP 298
           +P
Sbjct: 385 KP 386



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 90/188 (47%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++  Y     F +A  + + +P+    S+S+++ A ++   F + + +F +M   G+ P+
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
              L ++   CA L A   G  +H  +    L+ +  +  ++  MY +CG +  A  VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +S+KD    +A++   A  G  ++ + +   M  SG +    ++  +L+    +   ++
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 283 GLNLFENM 290
            + +F+ +
Sbjct: 236 AVVMFQKI 243


>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
          Length = 795

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/427 (33%), Positives = 242/427 (56%), Gaps = 14/427 (3%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           +++ +  ML +  +PN ++F  +I +   L  L N G  +HA  +K G   + FV S+++
Sbjct: 352 AIYFFSRMLALNIKPNQFSFGTVIPSATALQDL-NSGRQLHACAIKMGLESNVFVGSAVV 410

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
           +FY+ +  +  A+  F+ + + +VV++TT++ GY K   F++A  LF  MPERN VSW+A
Sbjct: 411 DFYAKLTSINEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNA 470

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193
           +++ YS++   +E ++LF  M   G  PNE      ++A A++ A+  G   H  A ++ 
Sbjct: 471 MISGYSQMGYNEEAVNLFVVMLREGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKFL 530

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
            + +V +  ++V  Y+KCG +  +L VF  +  K+  +WNA+I G A +G   +++  F+
Sbjct: 531 GKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFFE 590

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL---EHYACVVDLL 310
           +M  +G +P   T + +L  C H+ +V  G + F N + V   EP L   EH+AC+VDLL
Sbjct: 591 KMQDTGLRPNSVTLLGLLLACNHSGLVDKGYSYF-NKARVE--EPGLLTPEHHACMVDLL 647

Query: 311 ARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +R+G  +EAEKF+ E   + G+G      W ALL  CRI+  +E+G    RK+  +   D
Sbjct: 648 SRSGRFKEAEKFLHELPFVPGIG-----FWKALLGGCRIHSNMELGELAARKILALDPED 702

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQA 428
            S++V+  N +  AG     + +RK + E  MK  PG S IE+   V  F+ GD  H Q 
Sbjct: 703 VSSYVMLSNAHSAAGRWQSVSMIRKEMREKRMKGVPGSSWIEIRSKVHIFVTGDRNHDQH 762

Query: 429 GEIYRVI 435
            EIY+V+
Sbjct: 763 DEIYQVL 769



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 107/254 (42%), Gaps = 50/254 (19%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q  + + +V  ++ ML  G  PN  TFP  I A   +  L   G   H   VKF
Sbjct: 471 MISGYSQMGYNEEAVNLFVVMLREGXLPNERTFPCAISAVANIAAL-GMGRSFHGSAVKF 529

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D F+ +SL+ FY+    M  +  +F+  P +++V+W  ++ GY   G    A   F
Sbjct: 530 LGKFDVFIGNSLVSFYAKCGSMEESLLVFNTLPKKNIVSWNALICGYANHGRGMEAIYFF 589

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           EK                               MQ+ G++PN   L+ +L AC H G + 
Sbjct: 590 EK-------------------------------MQDTGLRPNSVTLLGLLLACNHSGLVD 618

Query: 181 QGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSA------LSVFEGISNKDAG 230
           +G   +SY  +  +E+  +L       +VD+ S+ G    A      L    GI     G
Sbjct: 619 KG---YSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHELPFVPGI-----G 670

Query: 231 AWNAMISGVAMNGD 244
            W A++ G  ++ +
Sbjct: 671 FWKALLGGCRIHSN 684



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 31/201 (15%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +V  Y    +  +A +LF+++P  + VS +A +  ++R    +E +  F +M  + +KPN
Sbjct: 308 IVCSYSASKELWDACKLFDEVPNWDVVSATATIGCFARYHHHEEAIYFFSRMLALNIKPN 367

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH------- 215
           +    +V+ +   L  +  G  +H+ A +  LE NV + +AVVD Y+K   ++       
Sbjct: 368 QFSFGTVIPSATALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAFE 427

Query: 216 ------------------------SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL 251
                                    AL++F  +  ++  +WNAMISG +  G  ++++ L
Sbjct: 428 DTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVNL 487

Query: 252 FDRMVKSGTQPTETTFVAVLT 272
           F  M++ G  P E TF   ++
Sbjct: 488 FVVMLREGXLPNERTFPCAIS 508


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 136/353 (38%), Positives = 200/353 (56%), Gaps = 5/353 (1%)

Query: 82  MGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           MG A  LF  +P++ D + WT MV GY   G+ + A E F  MP RN VSW+A++A Y +
Sbjct: 155 MGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVK 214

Query: 141 ISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
            S   + L +F+ M E  + +PN S L SVL  C++L A+  G  VH +  +  L +NV 
Sbjct: 215 NSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVT 274

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           + T+++ MY KCG ++ A  VF+ +S KD  AWNAMISG A +G   ++++LF++M   G
Sbjct: 275 VGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEG 334

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
             P   T +AVLT C H  +   G+  FE M   Y +EPQ++HY+C+VDLL RAG++E A
Sbjct: 335 VVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERA 394

Query: 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379
              I            + +G LL+ACR+Y  +E      RKL E    +   +V   NIY
Sbjct: 395 VNMIHSMP---FEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIY 451

Query: 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
             A    + ++VR+ + +  + K PG S +E+ GV  EF + D  H Q G I+
Sbjct: 452 AVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIH 504



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 139/291 (47%), Gaps = 21/291 (7%)

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
           ++  AR LFD  P  D V++ T++  +   GD + AR +F  MP ++  SW+ +++  S+
Sbjct: 61  RLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSK 120

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
               +E  ++FR M  V    + + +V+ L     +GA  + L+ ++  K      + IL
Sbjct: 121 NGASEEAAAMFRIM-PVRNAVSWNAMVAALACSGDMGA-AEDLFRNAPEK-----TDAIL 173

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SG 259
            TA+V  Y   G+V  A+  F  +  ++  +WNA+++G   N  A  +L +F  MV+ S 
Sbjct: 174 WTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSI 233

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGM 315
            QP  +T  +VL  C++   +  G  + +     + ++  L     V    + +  + G 
Sbjct: 234 VQPNASTLSSVLLGCSNLSALGFGRQVHQ-----WCMKLPLSRNVTVGTSLLSMYCKCGD 288

Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           + +A K  +E    +   D   W A++S    +G      +++ K+ + G+
Sbjct: 289 LNDACKVFDE----MSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGV 335



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 33/203 (16%)

Query: 23  DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
           D   +PN  T   ++  C  L  L  FG  VH   +K     +  V +SLL  Y     +
Sbjct: 231 DSIVQPNASTLSSVLLGCSNLSAL-GFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDL 289

Query: 83  GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
             A  +FD+   +D+V W  M+ GY + G    A +LFEK                    
Sbjct: 290 NDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEK-------------------- 329

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV-HSYAKRYHLEKNVILA 201
                      M++ G+ P+   L++VLTAC H G    G+    +  + Y +E  +   
Sbjct: 330 -----------MKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHY 378

Query: 202 TAVVDMYSKCGHVHSALSVFEGI 224
           + +VD+  + G +  A+++   +
Sbjct: 379 SCMVDLLCRAGLLERAVNMIHSM 401



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 5/152 (3%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T  V    + GD   A E F     +   +++ ++A Y++ S    +    R    +   
Sbjct: 16  TVAVAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIP-H 74

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+     ++L+     G I     V S        K+V     +V   SK G    A ++
Sbjct: 75  PDTVSYNTLLSCHFACGDIDGARRVFSTMP----VKDVTSWNTMVSGLSKNGASEEAAAM 130

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
           F  +  ++A +WNAM++ +A +GD   + +LF
Sbjct: 131 FRIMPVRNAVSWNAMVAALACSGDMGAAEDLF 162


>gi|218201765|gb|EEC84192.1| hypothetical protein OsI_30581 [Oryza sativa Indica Group]
          Length = 715

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 160/468 (34%), Positives = 241/468 (51%), Gaps = 39/468 (8%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF 62
           RG  +     L +F  L + + G  PN +T+  +++ACV +G LE FG  +H  +++ GF
Sbjct: 222 RGANEYCCKSLELFVQL-LAEDGVMPNEFTYDSVLRACVKMGALE-FGRSIHGCLIQSGF 279

Query: 63  GEDPFVVSSLLEFY-------------------SLVHK---------MGT---ARALFDK 91
             +  + S+L++ Y                   SL+           MG    A+ +F +
Sbjct: 280 ESEQLITSALVDLYCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQ 339

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
             + D  ++  M+  Y   G  E+ R +FE MP RN V+ +++M+   +    +E   LF
Sbjct: 340 MTEHDSGSYNLMIKAYADEGRLEDCRRMFEMMPRRNMVTLNSMMSVLLQNGKLEEGRKLF 399

Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
            Q++  G +   S   ++L ACA +G I QG  VH+   +   E N  + TA+VDMYSKC
Sbjct: 400 EQIRMKGTRA--STFPALLHACATIGTIEQGKMVHALLCKTPFESNGYVGTALVDMYSKC 457

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
           G V  A + F  I + +  +W ++I+G+A NG   +++  F RM+K+  +P E TF+ +L
Sbjct: 458 GCVSDARAAFSCIMSPNVASWTSLINGLAQNGHWMEAIVQFARMLKNNVKPNEITFLGIL 517

Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
                A +V  G+  F +M + YGV P +EHY C VDLL RA  V EAEKFI  KM    
Sbjct: 518 MASARAGLVNKGMRFFHSMES-YGVVPTVEHYTCAVDLLGRARRVREAEKFI-SKMP--I 573

Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391
             D  VWGALL+AC     +E+G +V  KL  MG    S +V   NIY + G   +  KV
Sbjct: 574 PADGVVWGALLTACWYTMDLEMGEKVAEKLFYMGTKHISAYVAMSNIYAKLGKWEDVVKV 633

Query: 392 RKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
           R  +     KK+PGCS IEV  +V  FL  D  H +  EIY ++   +
Sbjct: 634 RTRLRSINAKKEPGCSWIEVKDMVHVFLVEDRNHPEREEIYLMLEDLV 681



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 155/330 (46%), Gaps = 16/330 (4%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T+   + AC   G     G  VH  VVK G  + P V +SLL+FYS    +  AR LFD 
Sbjct: 114 TYASALGACA-RGRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDT 172

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKM-PERNAVSWSAIMAAYSRISD--FKEVL 148
               + + W+ MV    +     +A +L ++M P R+  +W+AI++ Y+R ++    + L
Sbjct: 173 LHANNELLWSPMVVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSL 232

Query: 149 SLFRQ-MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
            LF Q + E G+ PNE    SVL AC  +GA+  G  +H    +   E   ++ +A+VD+
Sbjct: 233 ELFVQLLAEDGVMPNEFTYDSVLRACVKMGALEFGRSIHGCLIQSGFESEQLITSALVDL 292

Query: 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
           Y + G V  A+ V+ G+        N +I+G    G  + +  +F +M    T+    ++
Sbjct: 293 YCRSGAVDDAVMVYNGLQMPSLITSNTLIAGFISMGRTEDAKLVFSQM----TEHDSGSY 348

Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
             ++        + D   +FE M         +     ++ +L + G +EE  K  E+  
Sbjct: 349 NLMIKAYADEGRLEDCRRMFEMMP-----RRNMVTLNSMMSVLLQNGKLEEGRKLFEQIR 403

Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRV 357
             + G  A+ + ALL AC   G IE G  V
Sbjct: 404 --MKGTRASTFPALLHACATIGTIEQGKMV 431



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 36/239 (15%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR +F+ M  R A+SW+A +AA++R    ++ L    +M       +E+   S L ACA 
Sbjct: 65  ARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACAR 124

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI----------- 224
              +  G  VH    +   +   ++  +++D YS C  + +A ++F+ +           
Sbjct: 125 GRCLRMGWQVHCQVVKSGSDDFPVVGASLLDFYSSCLDLDAARTLFDTLHANNELLWSPM 184

Query: 225 ---------------------SNKDAGAWNAMISGVAMNGD--AKKSLELFDRMV-KSGT 260
                                 ++D  AW A+ISG A   +    KSLELF +++ + G 
Sbjct: 185 VVALVRFNLLSDALDLLQRMPPSRDLFAWTAIISGYARGANEYCCKSLELFVQLLAEDGV 244

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
            P E T+ +VL  C     +  G ++   +    G E +    + +VDL  R+G V++A
Sbjct: 245 MPNEFTYDSVLRACVKMGALEFGRSIHGCLIQ-SGFESEQLITSALVDLYCRSGAVDDA 302



 Score = 40.8 bits (94), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%)

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           +A  VF+G+  + A +WNA ++  A  G  + +L    RM +S     E T+ + L  C 
Sbjct: 64  AARGVFDGMRRRAALSWNATVAAHARRGRVRDALGTAARMHRSAAGLDEATYASALGACA 123

Query: 276 HAKMVRDG 283
             + +R G
Sbjct: 124 RGRCLRMG 131


>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
          Length = 565

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 128/327 (39%), Positives = 204/327 (62%), Gaps = 3/327 (0%)

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           + +AR +FD+ P RD  +W+ ++ GY K G   +ARE+F++MP +N V+W+A++  Y++ 
Sbjct: 195 VSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQS 254

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
              KE L+LFR+M+  G++P+ + +V V++A + +G+     WV SY  +  +E+N  + 
Sbjct: 255 GVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVL 314

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
           TA+VDM++KCG+V  ALS F  I+  DA  + A+ISG+A +G AK +L++F+RM      
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
           P   TFV VLT C+HA +V  GL+ +E M   YG+E + +HYACVVD+L RAG +EEA +
Sbjct: 375 PDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFE 434

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            ++    G   G     GALLSAC+ +G +E+   V  KL E+   +   +++  NIY E
Sbjct: 435 MVQTMPMGPHPG---ALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAE 491

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSV 408
                EA ++R ++      K+PG S+
Sbjct: 492 KEQWEEAERIRSVMRTRVPFKQPGSSM 518



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 122/303 (40%), Gaps = 52/303 (17%)

Query: 68  VVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN 127
           V ++L++ Y+    +  A          D V++ +++  + ++    +A  LF  MP R 
Sbjct: 119 VANALVDLYAKCDDLPAAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRT 178

Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187
            VSW+A++  Y    D      +F QM        +S   SVL                 
Sbjct: 179 QVSWNAMVVVYVNAGDVSSARRVFDQMPT-----RDSTSWSVL----------------- 216

Query: 188 YAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
                            +  Y KCG + SA  VF+ +  K+  AW AMI+G A +G  K+
Sbjct: 217 -----------------IVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKE 259

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH----Y 303
           SL LF  M  +G +P   T V V++  +       G          Y  + ++E      
Sbjct: 260 SLALFREMEAAGIEPDAATMVGVISAASQI-----GSTELAGWVGSYVDKKRIERNDKVL 314

Query: 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
             +VD+ A+ G V+EA     E    +   DA  + AL+S    +G  ++  +V+ ++  
Sbjct: 315 TALVDMHAKCGNVDEALSAFRE----IAQPDAYPYTALISGLAAHGHAKLALQVFERMQA 370

Query: 364 MGI 366
             +
Sbjct: 371 QSV 373



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 108/246 (43%), Gaps = 34/246 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+  PK S+  + +M   G EP+  T   +I A   +G  E  G +V ++V K 
Sbjct: 247 MINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAG-WVGSYVDK- 304

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                         K  +R+    T +VD + K G+ + A   F
Sbjct: 305 ------------------------------KRIERNDKVLTALVDMHAKCGNVDEALSAF 334

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            ++ + +A  ++A+++  +     K  L +F +MQ   + P+    V VLTAC+H G + 
Sbjct: 335 REIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVWPDPITFVGVLTACSHAGLVD 394

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +GL +  +  K Y +E+       VVDM  + G +  A  + + +      GA  A++S 
Sbjct: 395 KGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFEMVQTMPMGPHPGALGALLSA 454

Query: 239 VAMNGD 244
              +G+
Sbjct: 455 CKTHGN 460


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/435 (31%), Positives = 242/435 (55%), Gaps = 8/435 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ G+ ++ + K +V  +  +  +GF P+  T   ++ + V    + N G  +H +V+K 
Sbjct: 223 ILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPS-VGDSEMLNMGRLIHGYVIKQ 281

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G  +D  V+S++++ Y     +    +LF++    +       + G  + G  + A E+F
Sbjct: 282 GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMF 341

Query: 121 EKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           E   E+    N VSW++I+A  ++     E L LFR+MQ  G+KPN   + S+L AC ++
Sbjct: 342 ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNI 401

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
            A+  G   H +A R HL  NV + +A++DMY+KCG ++ +  VF  +  K+   WN+++
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G +M+G AK+ + +F+ ++++  +P   +F ++L+ C    +  +G   F+ MS  YG+
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGI 521

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           +P+LEHY+C+V+LL RAG ++EA   I+E        D+ VWGALL++CR+   +++   
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP---FEPDSCVWGALLNSCRLQNNVDLAEI 578

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              KL  +   +  T+VL  NIY   G   E + +R  +   G+KK PGCS I+V   V 
Sbjct: 579 AAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638

Query: 417 EFLAGDNRHAQAGEI 431
             LAGD  H Q  +I
Sbjct: 639 TLLAGDKSHPQIDQI 653



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 6/302 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I    +A     S+  +  M   G  P+++  P L K C  L   +  G  +H      
Sbjct: 87  LIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFK-VGKQIHCVSCVS 145

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV  S+   Y    +MG AR +FD+  D+DVVT + ++  Y + G  E    + 
Sbjct: 146 GLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRIL 205

Query: 121 EKMP----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            +M     E N VSW+ I++ ++R    KE + +F+++  +G  P++  + SVL +    
Sbjct: 206 SEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDS 265

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +  G  +H Y  +  L K+  + +A++DMY K GHV+  +S+F      +AG  NA I
Sbjct: 266 EMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           +G++ NG   K+LE+F+   +   +    ++ +++  C       + L LF  M  V GV
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQ-VAGV 384

Query: 297 EP 298
           +P
Sbjct: 385 KP 386



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/188 (20%), Positives = 90/188 (47%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           ++  Y     F +A  + + +P+    S+S+++ A ++   F + + +F +M   G+ P+
Sbjct: 56  LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
              L ++   CA L A   G  +H  +    L+ +  +  ++  MY +CG +  A  VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +S+KD    +A++   A  G  ++ + +   M  SG +    ++  +L+    +   ++
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235

Query: 283 GLNLFENM 290
            + +F+ +
Sbjct: 236 AVVMFQKI 243


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 138/424 (32%), Positives = 229/424 (54%), Gaps = 40/424 (9%)

Query: 17  CYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
           C + M   G  PN +T+  +++AC  L  L      +H  ++K G   D FV S+L    
Sbjct: 142 CLILMFREGVRPNMFTYSSVLRACDGLPNLRQ----LHCGIIKTGLESDVFVRSAL---- 193

Query: 77  SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
                                      +D Y K  D +NA  +F++MP R+ V W++I+ 
Sbjct: 194 ---------------------------IDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIG 226

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
            +++ SD  E L+LF++M+  G   +++ L SVL AC  L  +  G  VH +  ++  ++
Sbjct: 227 GFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKF--DQ 284

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           ++IL  A++DMY KCG +  A S F  +  KD  +W+ M++G+A NG ++++LELF+ M 
Sbjct: 285 DLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMK 344

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316
           +SG++P   T + VL  C+HA +V  G   F +M  ++GV+P  EHY C++DLL RAG +
Sbjct: 345 ESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRL 404

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           +EA K I E        D+  W  LL ACR++  +++     +K+ E+   D  T++L  
Sbjct: 405 DEAVKLIHEME---CEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLS 461

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           NIY       +  +VRK ++  G++K PGCS IEV+  +  F+ GD  H +  EI + ++
Sbjct: 462 NIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLN 521

Query: 437 SFLK 440
             ++
Sbjct: 522 DLIE 525



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 142/291 (48%), Gaps = 45/291 (15%)

Query: 32  TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
           T+  LIK C   G ++  G  VH H+   G+    FVV++LL  Y               
Sbjct: 57  TYSELIKCCSARGAVQE-GKRVHEHIFCKGYEPKMFVVNTLLNMYV-------------- 101

Query: 92  SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS-RISD--FKEVL 148
                            K    E A +LF++MPERN VSW+ +++AYS +++D   K ++
Sbjct: 102 -----------------KFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLI 144

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
            +FR+    G++PN     SVL AC  L  + Q   +H    +  LE +V + +A++D+Y
Sbjct: 145 LMFRE----GVRPNMFTYSSVLRACDGLPNLRQ---LHCGIIKTGLESDVFVRSALIDVY 197

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           SK   + +AL VF+ +  +D   WN++I G A N D  ++L LF RM ++G    + T  
Sbjct: 198 SKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLT 257

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
           +VL  CT   ++  G  +  +   V   +  L     ++D+  + G +E+A
Sbjct: 258 SVLRACTGLALLELGRQVHVH---VLKFDQDLILNNALIDMYCKCGSLEDA 305



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 9/150 (6%)

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
           D    +     M+  G+  +      ++  C+  GA+ +G  VH +      E  + +  
Sbjct: 35  DLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVN 94

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
            +++MY K   +  A  +F+ +  ++  +W  MIS  + N    K+L+    M + G +P
Sbjct: 95  TLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFREGVRP 153

Query: 263 TETTFVAVLTTCT--------HAKMVRDGL 284
              T+ +VL  C         H  +++ GL
Sbjct: 154 NMFTYSSVLRACDGLPNLRQLHCGIIKTGL 183


>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1014

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 141/407 (34%), Positives = 228/407 (56%), Gaps = 8/407 (1%)

Query: 5    YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE 64
            +M A    LS F    M   G   + YT+ PL+K+C  L  L  FG  VH  V++ GF  
Sbjct: 601  HMAAGPKSLSFFS--SMKSRGIWADEYTYAPLLKSCSSLSDL-RFGKCVHGEVIRTGFHR 657

Query: 65   DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
               V   ++E Y+   +MG A+ +FD+ P+R+VV W  MV G+   GD +     F++M 
Sbjct: 658  LGKVRIGVVELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMS 717

Query: 125  ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            ER+ VSW++++++ S+    +E L LF +M + G  P+E+ +V++L   A LG +  G W
Sbjct: 718  ERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTMLPISASLGVLDTGKW 777

Query: 185  VHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            +HS A+   L K+ I +  A+VD Y K G + +A ++F  +  ++  +WN MISG A+NG
Sbjct: 778  IHSTAESNGLIKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTMISGSAVNG 837

Query: 244  DAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
              +  ++LFD M++ G   P E TF+ VL  C++   V  G  LF  M   + +EP+ EH
Sbjct: 838  KGESGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEH 897

Query: 303  YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
            Y  +VDL++R+G + EA +F+          +A +WG+LLSACR +G +++      +L 
Sbjct: 898  YGAMVDLMSRSGRIREAFEFLRNMP---VNANAAMWGSLLSACRSHGDVKLAELAAMELV 954

Query: 363  EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
            ++   +   +VL  N+Y E G   +  KVR L+ +  ++K  G S I
Sbjct: 955  KIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNCLRKTTGQSTI 1001


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 227/432 (52%), Gaps = 34/432 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+   + ++  Y+ M   G   + YT+  +  A      L+ FG  VH  V+K 
Sbjct: 342 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQ-FGRVVHGMVLKC 400

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  VVS                                + D Y K G  E+ R++F
Sbjct: 401 GL--DLMVVS----------------------------VNNAIADAYSKCGFLEDVRKVF 430

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M ER+ VSW+ ++ AYS+ S  +E L+ F  M+E G  PN+    SVL +CA L  + 
Sbjct: 431 DRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLE 490

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH    +  L+    + +A++DMY+KCG +  A  VF+ ISN D  +W A+ISG A
Sbjct: 491 YGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 550

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  + +L+LF RM  SG +    T + VL  C+H  MV +GL  F+ M   YGV P++
Sbjct: 551 QHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEM 610

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC++DLL R G +++A +FI  KM      +  VW  LL  CR++G +E+G    RK
Sbjct: 611 EHYACIIDLLGRVGRLDDAMEFI-RKMP--MEPNEMVWQTLLGGCRVHGNVELGEIAARK 667

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           +  +     +T+VL  N Y E G   +   +R ++ + G+KK+PG S I V G V +F +
Sbjct: 668 ILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYS 727

Query: 421 GDNRHAQAGEIY 432
           GD +H Q  EIY
Sbjct: 728 GDQQHPQKKEIY 739



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 134/276 (48%), Gaps = 36/276 (13%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV 69
           F     FC  +ML+ G  P+ + +  +I++C+ L  LE  G  VHA +V  GF    FV 
Sbjct: 149 FDGFKFFC--EMLNSGILPDKFAYSAIIQSCIGLDSLE-LGKMVHAQIVMRGFATHIFVS 205

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SLL  Y+                               K+G  E++  +F  M E N V
Sbjct: 206 TSLLNMYA-------------------------------KLGSIEDSYWVFNMMTEHNQV 234

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+A+++  +      E   LF +M+     PN   LVSV  A   L  +  G  V + A
Sbjct: 235 SWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCA 294

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKK 247
               +E NV++ TA++DMYSKCG +H A SVF+   I+      WNAMISG + +G +++
Sbjct: 295 SELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQE 354

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +LEL+ +M ++G      T+ +V      +K ++ G
Sbjct: 355 ALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFG 390



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 129/272 (47%), Gaps = 4/272 (1%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y K  +F  A  +F++MP+RN  SW+ ++   +    F +    F +M   G+ P++   
Sbjct: 111 YSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAY 170

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
            +++ +C  L ++  G  VH+         ++ ++T++++MY+K G +  +  VF  ++ 
Sbjct: 171 SAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTE 230

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
            +  +WNAMISG   NG   ++ +LF RM      P   T V+V         V  G  +
Sbjct: 231 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 290

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
            +N ++  G+E  +     ++D+ ++ G + +A    +     +  G    W A++S   
Sbjct: 291 -QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNF--INCGVNTPWNAMISGYS 347

Query: 347 IYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYN 377
             G  +    ++ ++ + GIT D  T+   +N
Sbjct: 348 QSGCSQEALELYVQMCQNGITSDLYTYCSVFN 379



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 13/132 (9%)

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVFEG 223
           L+ VL  CA  G+I +   VH    + + E    ++L      +YSKC    +A  VF+ 
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDE 126

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC--------- 274
           +  ++  +W  MI G   +G      + F  M+ SG  P +  + A++ +C         
Sbjct: 127 MPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQSCIGLDSLELG 186

Query: 275 --THAKMVRDGL 284
              HA++V  G 
Sbjct: 187 KMVHAQIVMRGF 198


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 248/438 (56%), Gaps = 13/438 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVK 59
           M+ GY Q    +  +  + +M++ G EP+  T+  +I AC   G P     +    H  +
Sbjct: 231 MLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQ 290

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFENARE 118
                + FV ++LL+ Y+    +G AR +FD+    R+ VTW  M+  Y ++G+ ++ARE
Sbjct: 291 IQL--NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARE 348

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLG 177
           LF  MP RN V+W++++A Y++       + LF++M     + P+E  +VSV++AC HLG
Sbjct: 349 LFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLG 408

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+  G WV  +     ++ ++    A++ MYS+CG +  A  VF+ ++ +D  ++N +IS
Sbjct: 409 ALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLIS 468

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G A +G   +++ L   M + G +P   TF+ VLT C+HA ++ +G  +FE++      +
Sbjct: 469 GFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----D 523

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P ++HYAC+VDLL R G +E+A++ +E        G   V+G+LL+A RI+ ++E+G   
Sbjct: 524 PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAG---VYGSLLNASRIHKQVELGELA 580

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
             KL E+   +    +L  NIY  AG   +  ++R+ + + G+KK  G S +E  G + +
Sbjct: 581 ANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHK 640

Query: 418 FLAGDNRHAQAGEIYRVI 435
           F+  D  H ++ +IY+++
Sbjct: 641 FIVADRSHERSDDIYQLL 658



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 185/391 (47%), Gaps = 73/391 (18%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+R Y         V  +  M   G  P+ + +P LIK+        N G+  HAHV+K 
Sbjct: 71  MLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSA------GNGGIGFHAHVLKL 124

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-------------------------- 94
           G G D FV +++++ Y+ +  +G AR +FD+ PD                          
Sbjct: 125 GHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQW 184

Query: 95  -------RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147
                  R+V+TWT MV GY K+ D E AR  F+ MPER+ VSW+A+++ Y++    +EV
Sbjct: 185 LFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEV 244

Query: 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207
           L LF +M   G++P+E+  V+V++AC+  G       +     +  ++ N  + TA++DM
Sbjct: 245 LRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDM 304

Query: 208 YSKCGHVHSALSVFE-------------------GISNKDAG-------------AWNAM 235
           Y+KCG + +A  +F+                    + N D+               WN+M
Sbjct: 305 YAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSM 364

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           I+G A NG +  ++ELF  M+ +    P E T V+V++ C H   +  G N         
Sbjct: 365 IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTEN 423

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
            ++  +  +  ++ + +R G +E+A++  +E
Sbjct: 424 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQE 454



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 143/334 (42%), Gaps = 66/334 (19%)

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM------PE---------------- 125
           LF+ + + +V  +T+M+  Y  + D      +FE M      P+                
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGI 115

Query: 126 ------------RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK-PNESGLVSVLTA 172
                        +A   +A++  Y+R+        +F ++ +   K  + + +VS    
Sbjct: 116 GFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWK 175

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
               G   Q  W+         E+NVI  TA+V  Y+K   + +A   F+ +  +   +W
Sbjct: 176 WESEG---QAQWLFDVMP----ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSW 228

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH-------AKMVRDGLN 285
           NAM+SG A NG A++ L LFD MV +G +P ETT+V V++ C+        A +VR    
Sbjct: 229 NAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVR---- 284

Query: 286 LFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALL 342
                  ++  + QL  +    ++D+ A+ G +  A +  +E    LG    +V W A++
Sbjct: 285 ------TLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDE----LGAYRNSVTWNAMI 334

Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           SA    G ++    ++  +    +  +++ +  Y
Sbjct: 335 SAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 227/432 (52%), Gaps = 34/432 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q+   + ++  Y+ M   G   + YT+  +  A      L+ FG  VH  V+K 
Sbjct: 396 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQ-FGRVVHGMVLKC 454

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D  VVS                                + D Y K G  E+ R++F
Sbjct: 455 GL--DLMVVS----------------------------VNNAIADAYSKCGFLEDVRKVF 484

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M ER+ VSW+ ++ AYS+ S  +E L+ F  M+E G  PN+    SVL +CA L  + 
Sbjct: 485 DRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFLE 544

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH    +  L+    + +A++DMY+KCG +  A  VF+ ISN D  +W A+ISG A
Sbjct: 545 YGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAIISGYA 604

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            +G  + +L+LF RM  SG +    T + VL  C+H  MV +GL  F+ M   YGV P++
Sbjct: 605 QHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGVVPEM 664

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC++DLL R G +++A +FI  KM      +  VW  LL  CR++G +E+G    RK
Sbjct: 665 EHYACIIDLLGRVGRLDDAMEFI-RKMP--MEPNEMVWQTLLGGCRVHGNVELGEIAARK 721

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           +  +     +T+VL  N Y E G   +   +R ++ + G+KK+PG S I V G V +F +
Sbjct: 722 ILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVKGRVHKFYS 781

Query: 421 GDNRHAQAGEIY 432
           GD +H Q  EIY
Sbjct: 782 GDQQHPQKKEIY 793



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 134/276 (48%), Gaps = 36/276 (13%)

Query: 10  FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV 69
           F     FC  +ML+ G  P+ + +  +I++C+ L  LE  G  VHA +V  GF    FV 
Sbjct: 203 FDGFKFFC--EMLNSGILPDKFAYSAIIQSCIGLDSLE-LGKMVHAQIVMRGFATHIFVS 259

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SLL  Y+                               K+G  E++  +F  M E N V
Sbjct: 260 TSLLNMYA-------------------------------KLGSIEDSYWVFNMMTEHNQV 288

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+A+++  +      E   LF +M+     PN   LVSV  A   L  +  G  V + A
Sbjct: 289 SWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCA 348

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKK 247
               +E NV++ TA++DMYSKCG +H A SVF+   I+      WNAMISG + +G +++
Sbjct: 349 SELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQE 408

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +LEL+ +M ++G      T+ +V      +K ++ G
Sbjct: 409 ALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFG 444



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 135/286 (47%), Gaps = 5/286 (1%)

Query: 94  DRDV-VTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFR 152
           D+D+ V +      Y K  +F  A  +F++MP+RN  SW+ ++   +    F +    F 
Sbjct: 151 DKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFC 210

Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
           +M   G+ P++    +++ +C  L ++  G  VH+         ++ ++T++++MY+K G
Sbjct: 211 EMLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLG 270

Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
            +  +  VF  ++  +  +WNAMISG   NG   ++ +LF RM      P   T V+V  
Sbjct: 271 SIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSK 330

Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
                  V  G  + +N ++  G+E  +     ++D+ ++ G + +A    +     +  
Sbjct: 331 AVGKLVDVNMGKEV-QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNF--INC 387

Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYN 377
           G    W A++S     G  +    ++ ++ + GIT D  T+   +N
Sbjct: 388 GVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFN 433



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 13/144 (9%)

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKC 211
           + E   +     L+ VL  CA  G+I +   VH    + + E    ++L      +YSKC
Sbjct: 109 ISETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKC 168

Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
               +A  VF+ +  ++  +W  MI G   +G      + F  M+ SG  P +  + A++
Sbjct: 169 SEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAII 228

Query: 272 TTC-----------THAKMVRDGL 284
            +C            HA++V  G 
Sbjct: 229 QSCIGLDSLELGKMVHAQIVMRGF 252


>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 511

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 236/439 (53%), Gaps = 9/439 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I+ Y   + P  S+  Y  +   G  PN++TF   I A             +H+   + 
Sbjct: 53  LIQSYSVHHQPHESIVLYNLLSFDGIRPNHHTFN-FIFAASASFSSARPLRLLHSQFFRS 111

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF  D F  ++L+  Y+ +  +  AR +FD+  +RDV  W  M+ GY + GD + A ELF
Sbjct: 112 GFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGDMKAAMELF 171

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
           + MP +N  SW+ +++ +S+  ++ E L++F  M+ +  +KPN   LVSVL ACA+LG +
Sbjct: 172 DSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGEL 231

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISG 238
             G  +  YA+      N+ +  A ++MYSKCG +  A  +F+ I N ++  +WN+MI  
Sbjct: 232 EIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGS 291

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +A +G   ++LEL+ +M++ G +P   TFV +L  C H  MV  G  L ++M  V+ + P
Sbjct: 292 LATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISP 351

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
           +LEHY C++DLL R G ++EA   I+         DA VWG LL AC  +G +E+     
Sbjct: 352 KLEHYGCMIDLLGRVGKLQEACDLIKTMP---MKPDAVVWGTLLGACSFHGNVEIAEIAS 408

Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV-VE 416
             L ++  T+    V+  NIY     WD    ++RKL+ +  M K  G S     GV V 
Sbjct: 409 EALMKLEPTNPGNCVIMSNIYAANEKWD-GVLRMRKLMKKETMTKAAGYSYFVEAGVEVH 467

Query: 417 EFLAGDNRHAQAGEIYRVI 435
           +F   D  H ++ EIY+V+
Sbjct: 468 KFTVEDKSHPRSYEIYQVL 486



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 132/323 (40%), Gaps = 58/323 (17%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           AR+LF+         ++ ++ +YS      E + L+  +   G++PN      +  A A 
Sbjct: 35  ARKLFDLHRNPCIFLYNKLIQSYSVHHQPHESIVLYNLLSFDGIRPNHHTFNFIFAASAS 94

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
             +      +HS   R   E +    TA++  Y+K G +  A  VF+ +SN+D   WNAM
Sbjct: 95  FSSARPLRLLHSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAM 154

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I+G    GD K ++ELFD M         T++  V++  +      + L +F  M     
Sbjct: 155 ITGYQRRGDMKAAMELFDSMPNKNV----TSWTTVISGFSQNGNYSEALTMFLCMEKDKS 210

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           V+P   H   V                                 ++L AC   G++E+G 
Sbjct: 211 VKPN--HITLV---------------------------------SVLPACANLGELEIGR 235

Query: 356 RVWRKLAEMGITDFSTHVLSYNIY-KEAGWDMEA-----NKVRKLISETGMKKKPGCSVI 409
           R+     E G  D        NIY + A  +M +     +  ++L  E G ++    ++I
Sbjct: 236 RLEGYARENGFFD--------NIYVRNATLEMYSKCGMIDVAKRLFDEIGNQR----NLI 283

Query: 410 EVNGVVEEFLAGDNRHAQAGEIY 432
             N ++   LA   +H +A E+Y
Sbjct: 284 SWNSMIGS-LATHGKHDEALELY 305


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 147/422 (34%), Positives = 226/422 (53%), Gaps = 15/422 (3%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           ML  G  P+  T   L+ AC+    L      VHA     G  ++  V + L+ FYS   
Sbjct: 351 MLSSGMLPDKITLASLLYACINCRNLTQVRQ-VHAQASVHGMLQNLIVANKLVHFYSYYR 409

Query: 81  KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR 140
            +  A  LFD    RD V+W+ MV G+ K+GD+ N    F ++    A   +  +     
Sbjct: 410 ALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPF--- 466

Query: 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
             +  E L LF +M+E G+ P++  +V+V+ ACA LGA+ +   +  Y +R   + +VIL
Sbjct: 467 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 526

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            TA++DM++KCG V SA  +F+ +  K+  +W+AMI+    +G  +K+L+LF  M++SG 
Sbjct: 527 GTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGI 586

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
            P + T V++L  C+HA +V +GL  F  M   Y V   ++HY CVVDLL RAG ++EA 
Sbjct: 587 LPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEAL 646

Query: 321 KFIE----EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
           K IE    EK       D  +WGA L ACR +  + +  +    L E+   +   ++L  
Sbjct: 647 KLIESMTVEK-------DEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLS 699

Query: 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436
           NIY  AG   +  K R L+S+  +KK PG + IEV+    +F  GD  H ++ EIY ++ 
Sbjct: 700 NIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLK 759

Query: 437 SF 438
           S 
Sbjct: 760 SL 761



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/275 (31%), Positives = 137/275 (49%), Gaps = 49/275 (17%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           VHA     G  E+  V + L+ FYS    +  A  LFD    RD V+W+ MV G+ K+GD
Sbjct: 100 VHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGD 159

Query: 113 F-------------------------------------------------ENARELFEKM 123
           +                                                 E+AR LF+KM
Sbjct: 160 YINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKM 219

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
            ER+ V+W+ ++  Y+      E L LF +M+E G+ P++  +V+V+ ACA LGA+ +  
Sbjct: 220 QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 279

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
            +  Y +R   + +VIL TA++DMY+KCG V SA  +F+ +  K+  +W+AMI+    +G
Sbjct: 280 IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 339

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278
             +K+L+LF  M+ SG  P + T  ++L  C + +
Sbjct: 340 QGRKALDLFRMMLSSGMLPDKITLASLLYACINCR 374



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 186/410 (45%), Gaps = 62/410 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLEN--FGMFVHAHVV---KFGFGE----DPFV 68
           + +++  G  P+NYT P +I+AC  L  L+     M+V    +   +F F +    D   
Sbjct: 167 FRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVT 226

Query: 69  VSSLLEFYSLVHKMGTARALFDK------SPDR--------------------------- 95
            + ++  Y+   K   +  LF+K       PD+                           
Sbjct: 227 WTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ 286

Query: 96  ------DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
                 DV+  T M+D Y K G  E+ARE+F++M E+N +SWSA++AAY      ++ L 
Sbjct: 287 RKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 346

Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
           LFR M   GM P++  L S+L AC +   +TQ   VH+ A  + + +N+I+A  +V  YS
Sbjct: 347 LFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYS 406

Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
               +  A  +F+G+  +D+ +W+ M+ G A  GD       F  +++ G +P   T   
Sbjct: 407 YYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYT--- 463

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA---EKFIEEK 326
            L  C +A    + L LF+ M    GV P       VV   A+ G + +A   + +I+ K
Sbjct: 464 -LPFCGNAN---ESLVLFDKMRE-EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRK 518

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
              L   D  +  A++      G +E    ++ ++ E  +  +S  + +Y
Sbjct: 519 KFQL---DVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAY 565



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 56/299 (18%)

Query: 67  FVVSSLLEFYSL-----VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F +S+L+   +L     VH   +   + +     ++V    ++  Y      ++A  LF+
Sbjct: 83  FYISALVNCRNLTQVRQVHAQASVHGMLE-----NIVVANKLIYFYSYYRALDDAYGLFD 137

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            M  R++VSWS ++  ++++ D+      FR++   G +P+   L  V+ AC  L     
Sbjct: 138 GMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDL----- 192

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
                         KN  L  A+VDMY KC  +  A  +F+ +  +D   W  MI G A 
Sbjct: 193 --------------KN--LQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 236

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT------HAKMVRDGLNLFE-NMSAVY 294
            G A +SL LF++M + G  P +   V V+  C        A+++ D +   +  +  + 
Sbjct: 237 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 296

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWGALLSACRIYGK 350
           G          ++D+ A+ G VE A +    +EEK       +   W A+++A   +G+
Sbjct: 297 GTA--------MIDMYAKCGCVESAREIFDRMEEK-------NVISWSAMIAAYGYHGQ 340


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 228/431 (52%), Gaps = 40/431 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y  A     ++   + ML  G  PN +T+  +++AC  L  L      +H  ++K 
Sbjct: 37  MISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDGLFNLRQ----LHCCIIKI 92

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV S+L                               +D Y + G+ ENA  +F
Sbjct: 93  GLDSDVFVRSAL-------------------------------IDVYSRWGELENALRVF 121

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++M   + V WS+I+A +++ SD  E L LF++M+  G    ++ L SVL AC  L  + 
Sbjct: 122 DEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLE 181

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH +  +Y  ++++IL  A++DMY KCG +  A +VF  +  KD  +W+ MI+G+A
Sbjct: 182 LGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLA 239

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
            NG +K++L+LF+ M   G +P   T V VL  C+HA +V +GL  F +M  ++G++P  
Sbjct: 240 QNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGR 299

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C++DLL RAG + EA   I E        DA  W ALL+ACR++  ++V     ++
Sbjct: 300 EHYGCMIDLLGRAGRLSEAVDLINEME---CEPDAVTWRALLNACRVHRNVDVAIHAAKQ 356

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           +  +   D  T+VL  NIY       +  +VR+ ++  G+KK+PGCS IEV+  +  F+ 
Sbjct: 357 ILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFIL 416

Query: 421 GDNRHAQAGEI 431
           GD  H Q  EI
Sbjct: 417 GDRSHPQIREI 427



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 146/291 (50%), Gaps = 33/291 (11%)

Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
           +++ Y K G   +A+++F+KMP+RN VSW+ +++AYS      + L     M   G++PN
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPN 65

Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
                SVL AC  L  + Q   +H    +  L+ +V + +A++D+YS+ G + +AL VF+
Sbjct: 66  MFTYSSVLRACDGLFNLRQ---LHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFD 122

Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
            +   D   W+++I+G A N D  ++L LF RM ++G    +TT  +VL  CT   ++  
Sbjct: 123 EMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLEL 182

Query: 283 G--------------------LNLF------ENMSAVY--GVEPQLEHYACVVDLLARAG 314
           G                    L+++      E+ +AV+   VE  +  ++ ++  LA+ G
Sbjct: 183 GRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNG 242

Query: 315 MVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
             +EA K  E  K+ G+      + G L  AC   G +E G   +  + E+
Sbjct: 243 YSKEALKLFESMKVLGIKPNYVTIVGVLF-ACSHAGLVEEGLYYFHSMKEL 292



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259
           L   +++MY K G +H A  VF+ + +++  +W  MIS  +      K+LE    M++ G
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 260 TQPTETTFVAVLTTCTHAKMVRDGL-NLFENMSAV--YGVEPQLEHYACVVDLLARAGMV 316
            +P   T+ +VL  C       DGL NL +    +   G++  +   + ++D+ +R G +
Sbjct: 62  VRPNMFTYSSVLRAC-------DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGEL 114

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLS 343
           E A +  +E +     GD  VW ++++
Sbjct: 115 ENALRVFDEMV----TGDLVVWSSIIA 137


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 4/373 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++++  Y    KM  AR LF+  P R++ +W TM+ GYG++GD   AR+ F+ MP+R+ V
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCV 360

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+AI+A Y++   ++E L++F ++++ G   N +     L+ CA + A+  G  +H  A
Sbjct: 361 SWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQA 420

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +        +  A++ MY KCG +  A   FEGI  KD  +WN M++G A +G  +++L
Sbjct: 421 VKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQAL 480

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
            +F+ M  +G +P E T V VL+ C+H  ++  G   F +M+  YGV P  +HY C++DL
Sbjct: 481 TVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDL 540

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
           L RAG +EEA+  I       G   A  WGALL A RI+G  E+G +    + +M   + 
Sbjct: 541 LGRAGRLEEAQDLIRNMPFQPG---AASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS 597

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             +VL  N+Y  +G  ++A+K+R  + + G++K PG S +EV   +  F  GD  H +  
Sbjct: 598 GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKE 657

Query: 430 EIYRVIHSF-LKM 441
            IY  +    LKM
Sbjct: 658 RIYAYLEELDLKM 670



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 40/329 (12%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D F  + +L  Y    ++G AR LFD  P++DVV+W +++ GY + G  + ARE+F+ M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           PE+N++SW+ ++AAY      +E   LF    +  +  + + L+        LG      
Sbjct: 169 PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL-ISWNCLMGGFVRKKKLG---DAR 224

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           W+          ++ I    ++  Y++ G +  A  +F+    +D   W AM+SG   NG
Sbjct: 225 WLFDKMP----VRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNG 280

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA----------- 292
              ++   FD M     +  E ++ A++      K +     LFE+M             
Sbjct: 281 MLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMIT 336

Query: 293 -------------VYGVEPQLE--HYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDAN 336
                         + + PQ +   +A ++   A++G  EEA   F+E K  G     A 
Sbjct: 337 GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRA- 395

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            +G  LS C     +E+G ++  +  +MG
Sbjct: 396 TFGCALSTCADIAALELGKQIHGQAVKMG 424



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q+   + ++  ++++   G   N  TF   +  C  +  LE  G  +H   VK 
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALE-LGKQIHGQAVKM 423

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G   FV ++LL  Y     +  A   F+   ++DVV+W TM+ GY + G         
Sbjct: 424 GYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHG--------- 474

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                            + R     + L++F  M+  G+KP+E  +V VL+AC+H G + 
Sbjct: 475 -----------------FGR-----QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLD 512

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  + +S  K Y +       T ++D+  + G +  A  +   +     A +W A++  
Sbjct: 513 RGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGA 572

Query: 239 VAMNGDAK 246
             ++G+ +
Sbjct: 573 SRIHGNTE 580



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 8/172 (4%)

Query: 84  TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143
           +A  +F+  P R  V++  M+ GY +   F  AR LF++MPER+  SW+ ++  Y R   
Sbjct: 67  SALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCR 126

Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
             +   LF  M E     +     S+L+  A  G + +   V         EKN I    
Sbjct: 127 LGDARRLFDLMPE----KDVVSWNSLLSGYAQNGYVDEAREVFDNMP----EKNSISWNG 178

Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           ++  Y   G +  A  +FE  S+ D  +WN ++ G         +  LFD+M
Sbjct: 179 LLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDKM 230



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 127/286 (44%), Gaps = 27/286 (9%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D D++ W   +  + + G  ++A  +F  MP R++VS++A+++ Y R S F    +LF Q
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHL--EKNVILATAVVDMYSK 210
           M E  +      L   +  C  LG           A+R + L  EK+V+   +++  Y++
Sbjct: 106 MPERDLFSWNVMLTGYVRNC-RLGD----------ARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
            G+V  A  VF+ +  K++ +WN +++    NG  +++  LF+    S +     ++  +
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCL 210

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330
           +      K + D   LF+ M     +      +  ++   A+ G + +A +  +E     
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRLFDES---- 261

Query: 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
              D   W A++S     G ++     + ++ E     ++  +  Y
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGY 307



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 95/482 (19%), Positives = 164/482 (34%), Gaps = 128/482 (26%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ GY +  F + ++  +  M   G +P+  T   ++ AC   G L+    + ++    +
Sbjct: 466 MLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDY 525

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP-DRDVVTW-----TTMVDGYGKMGDFE 114
           G        + +++      ++  A+ L    P      +W      + + G  ++G  E
Sbjct: 526 GVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG--E 583

Query: 115 NARELFEKMPERNA---VSWSAIMAAYSRISDFKEVLSLFRQ------------------ 153
            A E+  KM  +N+   V  S + AA  R  D  ++ S  R                   
Sbjct: 584 KAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKI 643

Query: 154 -------------------MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
                              ++E+ +K  E G VS+     H     +      +  +YH 
Sbjct: 644 HTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTKLVLHDVEEEE----KEHMLKYHS 699

Query: 195 EKNVIL----------ATAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGV 239
           EK  +              V+     C   HSA+     I  +     D+  ++    G 
Sbjct: 700 EKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGF 759

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
              GD    L+ F                  L    +  ++  G   F  M+  Y V P 
Sbjct: 760 CSCGDY--WLQFF------------------LLVVIYTGLLDTGAEYFYPMNEEYSVTPT 799

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
            +HY C++DLL R   +EE                    GALL A RI+G  E+G +  +
Sbjct: 800 SKHYTCMIDLLGRVDRLEE--------------------GALLGASRIHGNTELGEKAAQ 839

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
              +MG  +                    +K+R    + G++K PG S  EV   +  F 
Sbjct: 840 MFFKMGPQNSGI-----------------SKMR----DVGVQKVPGYSWFEVQNKIHTFS 878

Query: 420 AG 421
            G
Sbjct: 879 VG 880


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/373 (35%), Positives = 211/373 (56%), Gaps = 4/373 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++++  Y    KM  AR LF+  P R++ +W TM+ GYG++GD   AR+ F+ MP+R+ V
Sbjct: 301 NAMIAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCV 360

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+AI+A Y++   ++E L++F ++++ G   N +     L+ CA + A+  G  +H  A
Sbjct: 361 SWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQA 420

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +        +  A++ MY KCG +  A   FEGI  KD  +WN M++G A +G  +++L
Sbjct: 421 VKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQAL 480

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
            +F+ M  +G +P E T V VL+ C+H  ++  G   F +M+  YGV P  +HY C++DL
Sbjct: 481 TVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDL 540

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
           L RAG +EEA+  I       G   A  WGALL A RI+G  E+G +    + +M   + 
Sbjct: 541 LGRAGRLEEAQDLIRNMPFQPG---AASWGALLGASRIHGNTELGEKAAEMVFKMEPQNS 597

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             +VL  N+Y  +G  ++A+K+R  + + G++K PG S +EV   +  F  GD  H +  
Sbjct: 598 GMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKE 657

Query: 430 EIYRVIHSF-LKM 441
            IY  +    LKM
Sbjct: 658 RIYAYLEELDLKM 670



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 145/329 (44%), Gaps = 40/329 (12%)

Query: 64  EDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM 123
            D F  + +L  Y    ++G AR LFD  P++DVV+W +++ GY + G  + ARE+F+ M
Sbjct: 109 RDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNM 168

Query: 124 PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL 183
           PE+N++SW+ ++AAY      +E   LF    +  +  + + L+        LG      
Sbjct: 169 PEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL-ISWNCLMGGFVRKKKLG---DAR 224

Query: 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
           W+          ++ I    ++  Y++ G +  A  +F+    +D   W AM+SG   NG
Sbjct: 225 WLFDKMP----VRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNG 280

Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA----------- 292
              ++   FD M     +  E ++ A++      K +     LFE+M             
Sbjct: 281 MLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNISSWNTMIT 336

Query: 293 -------------VYGVEPQLE--HYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDAN 336
                         + + PQ +   +A ++   A++G  EEA   F+E K  G     A 
Sbjct: 337 GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRA- 395

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            +G  LS C     +E+G ++  +  +MG
Sbjct: 396 TFGCALSTCADIAALELGKQIHGQAVKMG 424



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 111/248 (44%), Gaps = 34/248 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q+   + ++  ++++   G   N  TF   +  C  +  LE  G  +H   VK 
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALE-LGKQIHGQAVKM 423

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G   FV ++LL  Y     +  A   F+   ++DVV+W TM+ GY + G         
Sbjct: 424 GYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHG--------- 474

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                            + R     + L++F  M+  G+KP+E  +V VL+AC+H G + 
Sbjct: 475 -----------------FGR-----QALTVFESMKTAGVKPDEITMVGVLSACSHTGLLD 512

Query: 181 QGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G  + +S  K Y +       T ++D+  + G +  A  +   +     A +W A++  
Sbjct: 513 RGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGA 572

Query: 239 VAMNGDAK 246
             ++G+ +
Sbjct: 573 SRIHGNTE 580



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 127/286 (44%), Gaps = 27/286 (9%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           D D++ W   +  + + G  ++A  +F  MP R++VS++A+++ Y R S F    +LF Q
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHL--EKNVILATAVVDMYSK 210
           M E  +      L   +  C  LG           A+R + L  EK+V+   +++  Y++
Sbjct: 106 MPERDLFSWNVMLTGYVRNC-RLGD----------ARRLFDLMPEKDVVSWNSLLSGYAQ 154

Query: 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270
            G+V  A  VF+ +  K++ +WN +++    NG  +++  LF+    S +     ++  +
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFE----SKSDWDLISWNCL 210

Query: 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330
           +      K + D   LF+ M     +      +  ++   A+ G + +A +  +E     
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAIS-----WNTMISGYAQGGGLSQARRLFDES---- 261

Query: 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
              D   W A++S     G ++     + ++ E     ++  +  Y
Sbjct: 262 PTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGY 307


>gi|225433481|ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g03510 [Vitis vinifera]
 gi|298205226|emb|CBI17285.3| unnamed protein product [Vitis vinifera]
          Length = 430

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 219/384 (57%), Gaps = 10/384 (2%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           + + FP  +K+C       N G  +HAHV KF    +PFV  +L++ Y     + +AR L
Sbjct: 46  DAFVFPLALKSCAA-AHRPNLGAAIHAHVTKFSLVSNPFVACALVDMYGKCVSVSSARHL 104

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMAAYSRISD--FK 145
           FD+ P R++V W  M+  Y   G   +A  LFE M  E NA +++AI++  S + D  FK
Sbjct: 105 FDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFK 164

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
             LS +R+M EVG+K N   L+++L AC  L A+T    +H YA R  ++ +  L + +V
Sbjct: 165 -ALSFYRRMGEVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLV 223

Query: 206 DMYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           + Y +CG + ++  VF+ IS   +D  AW+++IS  A++GDA+ +LE F++M  +  QP 
Sbjct: 224 EAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPD 283

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TF+ VL  C+HA +  + L  F  M   YGVE   +HY+CVVD L+RAG + EA + I
Sbjct: 284 GITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEII 343

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +   G      A  WGALL ACR YG++E+     R L E+   + + +VL   IY   G
Sbjct: 344 Q---GMPVKSTAKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYVLLARIYASVG 400

Query: 384 WDMEANKVRKLISETGMKKKPGCS 407
              EA ++R+ ++E G+K  PG S
Sbjct: 401 RHEEAQRMRREMNEMGVKAAPGSS 424


>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/487 (32%), Positives = 250/487 (51%), Gaps = 76/487 (15%)

Query: 3   RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA-------CV-------------- 41
           R   Q N P  ++  Y++M  +GF+ +N+TFP L+KA       C+              
Sbjct: 28  RRVSQGN-PDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAMKTGFS 86

Query: 42  --------ILGPLENFGMFVHAHVVKFGFG-EDPFVVSSLLEFYSLVHKMGTARALFDKS 92
                   +L     FG   HA  V    G +D  V +S+L  Y+   +M  A  LFD  
Sbjct: 87  GHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMKLFDNM 146

Query: 93  PDRDVVTWTTMVDGYGKMG-------------------------------DFENARELFE 121
           P +D+ ++  M+ GY K+G                               D  NAR LF+
Sbjct: 147 PLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACTNVGDMGNARNLFD 206

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            MP++N ++W+ +++ Y     + E + LF +M+    + +   +  VL+ACAHLG + +
Sbjct: 207 VMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGK 266

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  +H YA+ + L  +  +AT+++DMY+KCG +  +L VF     KD   WNA+ISG+A+
Sbjct: 267 GTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLAL 326

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           +G    +++L D+M  +G +P E TF+ +L+ C+H  +V++G  LF+ M   +G+ P+LE
Sbjct: 327 HGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPPKLE 386

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
           HY C+VDLL RAG ++ A + I+      G    ++ GALL AC I+  +E G +V    
Sbjct: 387 HYGCMVDLLGRAGFLDPAFQLIKAMPFEPG---ESILGALLGACVIHQDLETGEKVINL- 442

Query: 362 AEMGITDFSTHV------LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
               IT  + HV      +  N+Y   G   EAN+ R+ ++E+G+ K  G S IEV+G  
Sbjct: 443 ----ITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIEVDGKF 498

Query: 416 EEFLAGD 422
             FLAGD
Sbjct: 499 YRFLAGD 505



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+ ++       +  + +  + +M+ VG   +      +L A + L +   G  +H  A 
Sbjct: 22  WNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFALHGQAM 81

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +     +  + TA++DMYS  G +  A  VFE +  KD   WN+M++  A  G    +++
Sbjct: 82  KTGFSGHCFVGTALLDMYSAFGAIDHATKVFEEMGVKDVVVWNSMLAAYASCGQMDNAMK 141

Query: 251 LFDRM 255
           LFD M
Sbjct: 142 LFDNM 146



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+ A     +V  + +M     E ++ T   ++ AC  LG L   G  +H +    
Sbjct: 219 MISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLSACAHLGWLGK-GTEMHVYAQDH 277

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                P V +SL++ Y+    +  +  +F KS  +D+  W  ++ G    G    A +L 
Sbjct: 278 RLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLL 337

Query: 121 EKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKP 161
           +KM +     + +++  +++A S  S  +E   LF  M+ E G+ P
Sbjct: 338 DKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCMEKEFGLPP 383


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 142/433 (32%), Positives = 226/433 (52%), Gaps = 36/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY        SV  + +++ MG  P++ T   LI      G  E     +HAHVVK 
Sbjct: 293 LISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGH-EPLAGCLHAHVVKA 351

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G                                D +    T +   Y +  D ++AR  F
Sbjct: 352 GL-------------------------------DANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + MPE+   SW+A+++ Y++    +  ++LF+QMQ + ++PN   + S L+ACA LGA++
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALS 440

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVH       LE NV + TA++DMY KCG +  A  +F+ + NK+  +WN MISG  
Sbjct: 441 LGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYG 500

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G   ++L+L+  M+ +   PT +TF++VL  C+H  +V++G  +F +M++ YG+ P +
Sbjct: 501 LHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGI 560

Query: 301 EHYACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           EH  C+VDLL RAG ++EA + I E     +G G   +WGALL AC ++   ++     +
Sbjct: 561 EHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPG---IWGALLGACMVHKDGDLAKLASQ 617

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           KL E+   +   +VL  N+Y       EA  VR+      + K PGC++IE+      F+
Sbjct: 618 KLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFM 677

Query: 420 AGDNRHAQAGEIY 432
           AGD  H Q+  IY
Sbjct: 678 AGDRAHPQSDAIY 690



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 66/341 (19%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA  V  GF  D FV S+L + Y            F  S   D                
Sbjct: 145 LHALAVASGFAADNFVASALAKLY------------FTLSRGND---------------- 176

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLT 171
              AR++F+ +P  + V W+ ++A  S      E L  F +M   G ++P+ + L SVL 
Sbjct: 177 ---ARKVFDAVPSPDTVLWNTLLAGLSG----SEALEAFVRMAGAGSVRPDSTTLASVLP 229

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           A A +   T G  VH++ ++  L ++  + T ++ +Y+KCG +  A  +F+ +   D   
Sbjct: 230 AAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVT 289

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV-----------LTTCTHAKMV 280
           +NA+ISG ++NG    S+ELF  +V  G +P+ +T VA+           L  C HA +V
Sbjct: 290 YNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVV 349

Query: 281 RDGLNL--------------FENMSAVYGV-----EPQLEHYACVVDLLARAGMVEEAEK 321
           + GL+               F +M +         E  +E +  ++   A+ G+ E A  
Sbjct: 350 KAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVA 409

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
             ++        +     + LSAC   G + +G  V + +A
Sbjct: 410 LFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIA 450



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 158/343 (46%), Gaps = 17/343 (4%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T ++  Y K GD E AR LF++M   + V+++A+++ YS        + LF+++  +G++
Sbjct: 260 TGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLR 319

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           P+ S LV+++   +  G       +H++  +  L+ N  ++TA+  +Y +   + SA   
Sbjct: 320 PSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRA 379

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F+ +  K   +WNAMISG A NG  + ++ LF +M     +P   T  + L+ C     +
Sbjct: 380 FDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGAL 439

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
             G      + A   +E  +     ++D+  + G + EA    +     +   +   W  
Sbjct: 440 SLG-KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDS----MDNKNVVSWNV 494

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY--KEAGWDMEANKV-RKLISE 397
           ++S   ++G+     ++++ + +  +   S+  LS  +Y     G   E   V R + S+
Sbjct: 495 MISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSV-LYACSHGGLVKEGTTVFRSMTSD 553

Query: 398 TGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            G+   PG   IE    + + L    R  Q  E + +I  F K
Sbjct: 554 YGI--TPG---IEHCTCMVDLL---GRAGQLKEAFELISEFPK 588


>gi|297744236|emb|CBI37206.3| unnamed protein product [Vitis vinifera]
          Length = 664

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 131/368 (35%), Positives = 214/368 (58%), Gaps = 6/368 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +S++  Y  + ++  A++LFD  P RD ++WT+M++GY  +G    A  LF  MP+R+AV
Sbjct: 293 NSMINGYIRIGQLEKAQSLFDTIPVRDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAV 352

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           +W+ +++ + +   F E   LF +M+  G+ P  S    +L A   +  + QG   H   
Sbjct: 353 AWTVMVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQGRQFHCLL 412

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +   E ++IL  +++ MY+KCG +  A S+F  + ++D  +WN+MI G + +G   ++L
Sbjct: 413 MKTQFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEAL 472

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           ++F+ M+ SGT P   TF+ +L+ C+HA ++  G  LF+ MS V+ ++PQLEHY C+V+L
Sbjct: 473 KVFEAMLTSGTHPNSVTFLGILSACSHAGLLNQGWELFDAMSDVFAIQPQLEHYVCMVNL 532

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG--NRVWRKLAEMGIT 367
           L RAG VEEAE+FI +        D  +WGALL  C  +G I  G   R  ++L E+   
Sbjct: 533 LGRAGKVEEAEEFISKLP---FEPDLTIWGALLGVCG-FGMINTGVARRAAKRLLELDPL 588

Query: 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
           +   HV+  NI+   G   E  ++RK +   G++K PGCS I + G    FL+GD  H Q
Sbjct: 589 NAPAHVVLCNIHASIGQRAEEGQLRKEMGLKGVRKVPGCSWILLKGEPYVFLSGDRIHPQ 648

Query: 428 AGEIYRVI 435
           A E+  ++
Sbjct: 649 ADEMLSLL 656



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y+   +M  AR LFD   DR+VVTWT+M+ GY + G+ +    LF+KMPERN VSW+A++
Sbjct: 210 YAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPERNVVSWTAMI 269

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
             ++    +KE L+         M  N     S++     +G + +   +          
Sbjct: 270 GGFAWNGFYKEALN--------SMSYNTQSCNSMINGYIRIGQLEKAQSLFDTIP----V 317

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           ++ I  T++++ Y   G +  A  +F  + ++DA AW  M+SG   N    ++  LF  M
Sbjct: 318 RDKISWTSMINGYFNVGQIAKACYLFNNMPDRDAVAWTVMVSGHVQNELFAEATYLFSEM 377

Query: 256 VKSGTQPTETTFVAVL 271
              G  P  +TF  +L
Sbjct: 378 RVKGVSPLNSTFSILL 393



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 23/203 (11%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +SLL  +S    +  ARALF+  P+R+VVT+  M+ GY + G   +A   FE+MPERN V
Sbjct: 80  TSLLSKFSKNGFIDEARALFEIMPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPERNVV 139

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA---------HLGAIT 180
           SW++++   +      E   LF  M E  +    S LV ++ +            +   +
Sbjct: 140 SWTSLLCGLANAGRIGEARELFNVMPERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKS 199

Query: 181 QGLW---VHSYAKRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISN 226
           Q  W   +  YA+   +E           +NV+  T+++  Y + G+V     +F+ +  
Sbjct: 200 QVSWNVMIAGYAEHSRMEEARVLFDGMGDRNVVTWTSMISGYCRAGNVQEGYCLFQKMPE 259

Query: 227 KDAGAWNAMISGVAMNGDAKKSL 249
           ++  +W AMI G A NG  K++L
Sbjct: 260 RNVVSWTAMIGGFAWNGFYKEAL 282



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 110/228 (48%), Gaps = 17/228 (7%)

Query: 67  FVVSSLLEFYSLVHKMGTARALFDKSPDR----DVVTWTTMVDGYGKMGDFENARELFEK 122
           F  S +LE  S   ++  AR + D+ P+R     VV WT+++  + K G  + AR LFE 
Sbjct: 43  FDDSQILECLS-QQRLREARHMLDEMPNRGVLDRVVCWTSLLSKFSKNGFIDEARALFEI 101

Query: 123 MPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182
           MPERN V+++A+++ Y +     +    F +M E     N     S+L   A+ G I + 
Sbjct: 102 MPERNVVTYNAMLSGYVQCGRLSDACRFFEEMPE----RNVVSWTSLLCGLANAGRIGEA 157

Query: 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242
             + +       E+NV+   +++    + G +  A  VF  +  K   +WN MI+G A +
Sbjct: 158 RELFNVMP----ERNVVSWNSMLVGLIRSGQLEEARRVFNEMPVKSQVSWNVMIAGYAEH 213

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
              +++  LFD M          T+ ++++    A  V++G  LF+ M
Sbjct: 214 SRMEEARVLFDGMGDRNV----VTWTSMISGYCRAGNVQEGYCLFQKM 257



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 46/263 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+ G++Q      + + + +M   G  P N TF  L+ A   +  L+  G   H  ++K 
Sbjct: 357 MVSGHVQNELFAEATYLFSEMRVKGVSPLNSTFSILLGAAGAMAYLDQ-GRQFHCLLMKT 415

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  D  + +SL+  Y+   ++G A ++F K   RD+++W +M+ G+   G    A ++F
Sbjct: 416 QFEFDLILQNSLISMYAKCGEIGDAYSIFSKMISRDLISWNSMIMGFSHHGLTSEALKVF 475

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E M                                  G  PN    + +L+AC+H G + 
Sbjct: 476 EAMLTS-------------------------------GTHPNSVTFLGILSACSHAGLLN 504

Query: 181 QGLW--VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMI- 236
           QG W    + +  + ++  +     +V++  + G V  A      +    D   W A++ 
Sbjct: 505 QG-WELFDAMSDVFAIQPQLEHYVCMVNLLGRAGKVEEAEEFISKLPFEPDLTIWGALLG 563

Query: 237 --------SGVAMNGDAKKSLEL 251
                   +GVA    AK+ LEL
Sbjct: 564 VCGFGMINTGVARRA-AKRLLEL 585


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 222/377 (58%), Gaps = 9/377 (2%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++++  Y+   ++  A  LF++ P+RD+ +W TM+ G  + GD   AR+LF +MP++N +
Sbjct: 243 NAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVI 302

Query: 130 SWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           SW+ ++    +  + +E L +F R +   G KPN+   VSVL AC++L  + +G  VH  
Sbjct: 303 SWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQI 362

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAK 246
             +   + +  + +A+++MYSKCG + +A  +F+    S +D  +WN +I+  A +G  K
Sbjct: 363 ISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGK 422

Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
           +++  F  M KSG +P + T+V +L+ C+HA +V +GL  F+ +     +  + +HYAC+
Sbjct: 423 EAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACL 482

Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           VDL  RAG ++EA  FIE          A VWGALL+ C ++  +++G +  +KL E+  
Sbjct: 483 VDLCGRAGRLKEAFGFIERLE---TKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEP 539

Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHA 426
            +  T++L  NIY   G   EA +VR  + + G+KK+PGCS IEV   V  F+ GD  H+
Sbjct: 540 ENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHS 599

Query: 427 QAGEIY---RVIHSFLK 440
           Q+  IY   R +HS +K
Sbjct: 600 QSKLIYSLLRDLHSKMK 616



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 12/232 (5%)

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y   +K+  A  LF++ P+++VV+W TM+DGY + G  ++A  LFEKMPERN VSW+ +M
Sbjct: 125 YIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVM 184

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           +  ++    +E   LF +M E  +        +++   +  G I +   +         E
Sbjct: 185 SMLAQCGRIEEARRLFDRMPERDV----ISWTAMIAGLSKNGRIDEARLLFDRMP----E 236

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           +NV+   A++  Y++   +  AL +FE +  +D  +WN MI+G+  NGD +++ +LF+ M
Sbjct: 237 RNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEM 296

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
            K        ++  ++T C       + L +F  M +  G +P    +  V+
Sbjct: 297 PKKNV----ISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVL 344



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 140/280 (50%), Gaps = 26/280 (9%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM-PERNAVSWSAIMAAYSRISD 143
           AR LFD+  + DV+TWTT++ GY K G  E AR LF+++  ++N V+W+A++  Y R + 
Sbjct: 71  ARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNK 130

Query: 144 FKEVLSLFRQMQEVGMKPNESGLV--SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
             +   LF +M      PN++ +   +++   A  G I   +++         E+NV+  
Sbjct: 131 ISDAEKLFNEM------PNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMP----ERNVVSW 180

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
             V+ M ++CG +  A  +F+ +  +D  +W AMI+G++ NG   ++  LFDRM +    
Sbjct: 181 NTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNV- 239

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
               ++ A++T       + + L+LFE M      E  L  +  ++  L + G +  A K
Sbjct: 240 ---VSWNAMITGYAQNLRLDEALDLFERMP-----ERDLPSWNTMITGLIQNGDLRRARK 291

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
              E    +   +   W  +++ C   G+ E   +++ ++
Sbjct: 292 LFNE----MPKKNVISWTTMITGCVQEGESEEALKIFSRM 327



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 119/254 (46%), Gaps = 43/254 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI G +Q    + ++  +  ML   G +PN  TF  ++ AC  L  L   G  VH  + K
Sbjct: 307 MITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGE-GQQVHQIISK 365

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDK--SPDRDVVTWTTMVDGYGKMGDFENAR 117
             + +  FVVS+L+  YS   ++GTAR +FD   +  RD+V+W                 
Sbjct: 366 TVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSW----------------- 408

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
                         + I+AAY+     KE ++ F++M++ G KP++   V +L+AC+H G
Sbjct: 409 --------------NGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAG 454

Query: 178 AITQGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSALSVFEGISNK-DAGAW 232
            + +GL    Y      ++++++       +VD+  + G +  A    E +  K  A  W
Sbjct: 455 LVEEGL---KYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVW 511

Query: 233 NAMISGVAMNGDAK 246
            A+++G  ++ + K
Sbjct: 512 GALLAGCNVHANVK 525



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/213 (20%), Positives = 85/213 (39%), Gaps = 33/213 (15%)

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
           K + ++ NV     ++   SK G +  A  +F+ +   D   W  +ISG    G  +++ 
Sbjct: 44  KDFTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEAR 103

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM------------------- 290
            LFDR+     +    T+ A++     +  + D   LF  M                   
Sbjct: 104 RLFDRV---DAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGYAQNG 160

Query: 291 ---SAVYGVEPQLEH----YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
              SA+Y  E   E     +  V+ +LA+ G +EEA +  +     +   D   W A+++
Sbjct: 161 RIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDR----MPERDVISWTAMIA 216

Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
                G+I+    ++ ++ E  +  ++  +  Y
Sbjct: 217 GLSKNGRIDEARLLFDRMPERNVVSWNAMITGY 249


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 227/435 (52%), Gaps = 35/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY+  +    +V  +  M + G   N+ T   LI ACV    LE  G  +H   +K+
Sbjct: 123 LVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLE-LGSSLHCSTLKY 181

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF                               D DV      +  Y K G    A++LF
Sbjct: 182 GF-------------------------------DSDVSVVNCFITMYMKCGSVNYAQKLF 210

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP +  +SW+A+++ Y++      VL L+R M   G+ P+   LV VL++CA+LGA +
Sbjct: 211 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQS 270

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V    +      N  L  A+++MY++CG++  A +VF+G+  +   +W A+I G  
Sbjct: 271 VGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYG 330

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  + +++LF  M++SG +P  T FV VL+ C+HA +   GL  F+ M   Y +EP  
Sbjct: 331 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 390

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+VDLL RAG ++EA+  IE         D  VWGALL AC+I+  +E+    + +
Sbjct: 391 EHYSCMVDLLGRAGRLKEAQTLIESMP---IKPDGAVWGALLGACKIHKNVELAELAFER 447

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   +   +VL  NIY  A       ++R ++ E  +KK PGCS +E+ G V  F+ 
Sbjct: 448 VIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIV 507

Query: 421 GDNRHAQAGEIYRVI 435
           GD  H Q+ EIYRV+
Sbjct: 508 GDRNHLQSDEIYRVL 522



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 161/352 (45%), Gaps = 41/352 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  PN +TFP  +K+C  L  L   G   H  + K G   +PFV + L+  Y 
Sbjct: 37  YPQMLRHGDRPNAFTFPFALKSCAALS-LPILGSQFHGQITKVGCVFEPFVQTGLISMY- 94

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK--MPERNAVSWSAIM 135
                                   ++VD         NAR++FE+     +  V ++A++
Sbjct: 95  ---------------------CKGSLVD---------NARKVFEENFHSRKLTVCYNALV 124

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           + Y   S   E + LFRQM E G+  N   L+ ++ AC     +  G  +H    +Y  +
Sbjct: 125 SGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFD 184

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +V +    + MY KCG V+ A  +F+ +  K   +WNAM+SG A NG A   LEL+  M
Sbjct: 185 SDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNM 244

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNL-FENMSAVYGVEPQLEHYACVVDLLARAG 314
             +G  P   T V VL++C +      G  + F+  ++ +   P L +   ++++ AR G
Sbjct: 245 DMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCG 302

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            + +A+   +    G+       W A++    ++G  E+  ++++++   GI
Sbjct: 303 NLTKAQAVFD----GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGI 350



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 45/317 (14%)

Query: 127 NAVS--WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           NA+S  W+  +   ++   F + LSL+ QM   G +PN       L +CA L     G  
Sbjct: 11  NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQ 70

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISGVAMN 242
            H    +        + T ++ MY K   V +A  VFE    S K    +NA++SG   N
Sbjct: 71  FHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSN 130

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
               +++ LF +M + G      T + ++  C     +  G +L  + +  YG +  +  
Sbjct: 131 SKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSV 189

Query: 303 YACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWG---------------------- 339
             C + +  + G V  A+K  +E  + GL   +A V G                      
Sbjct: 190 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 249

Query: 340 --------ALLSACRIYGKIEVGNRVWRKLAEMGITD--FSTHVLSYNIYKEAGWDMEAN 389
                    +LS+C   G   VG+ V  K+   G T   F  + L  N+Y   G   +A 
Sbjct: 250 HPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNAL-INMYARCGNLTKAQ 308

Query: 390 KV------RKLISETGM 400
            V      R L+S T +
Sbjct: 309 AVFDGMPERTLVSWTAI 325


>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 133/332 (40%), Positives = 204/332 (61%), Gaps = 11/332 (3%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKM-PERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
           DVV    +VD Y K GD   A   F  M P +N V+W+ +++A++R  + +E L LFR+M
Sbjct: 198 DVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISAHARAGELQEALELFREM 257

Query: 155 -QEVGMK----PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV-ILATAVVDMY 208
            Q+ G      P+++  V+VL ACA LGA+  G WVH+Y  R   +    ++  A++DMY
Sbjct: 258 LQQQGCTSSPLPDDATFVAVLGACARLGALDAGRWVHAYIVRTGRDAAAGVVGNALIDMY 317

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG V  A  VF+ ++ +D   + +MISG+AM+G  +++L LF  M ++  +P E TF+
Sbjct: 318 AKCGAVEQAAEVFDAMTRRDVYTYTSMISGLAMHGRGEEALALFGDMRQARVRPNEVTFL 377

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            VL+ C HA  + DGL  F+ M+ ++GV P +EHY CVVD+L RAG ++EAE+ +     
Sbjct: 378 GVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVVDMLGRAGRLDEAEELVSVMP- 436

Query: 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
                DA +WG+LL+ACR +G ++   RV R++AE    D   +VL  N+Y + G   +A
Sbjct: 437 --IRPDAIIWGSLLAACRAHGHVDRAERVMRRMAE-DEDDAGDYVLMSNMYAQEGRHGKA 493

Query: 389 NKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
            +VR+ +    + K PGCS+IE++GVV EF A
Sbjct: 494 VQVRRQMRRGKVDKVPGCSLIEIDGVVHEFQA 525



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 35/233 (15%)

Query: 28  PNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEFYSLVHKMGTAR 86
           P++ TF  ++ AC  LG L+  G +VHA++V+ G      VV ++L++ Y+    +  A 
Sbjct: 269 PDDATFVAVLGACARLGALDA-GRWVHAYIVRTGRDAAAGVVGNALIDMYAKCGAVEQAA 327

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKE 146
            +FD    RDV T+T+M+ G    G  E                               E
Sbjct: 328 EVFDAMTRRDVYTYTSMISGLAMHGRGE-------------------------------E 356

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW-VHSYAKRYHLEKNVILATAVV 205
            L+LF  M++  ++PNE   + VL+AC H G I  GL    + A+ + +   +     VV
Sbjct: 357 ALALFGDMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGIEHYGCVV 416

Query: 206 DMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
           DM  + G +  A  +   +    DA  W ++++    +G   ++  +  RM +
Sbjct: 417 DMLGRAGRLDEAEELVSVMPIRPDAIIWGSLLAACRAHGHVDRAERVMRRMAE 469


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 154/500 (30%), Positives = 253/500 (50%), Gaps = 74/500 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG--PLENFGMFVHAHVV 58
           ++R Y   + P  ++  ++DM     +   Y+F  LIKA    G  P+       H HV 
Sbjct: 178 LLRAYALNSLPHAALAVFVDMPLRQRDTFTYSF--LIKALATAGVTPVRA----AHTHVF 231

Query: 59  KFGFGEDPFVVSSLLEFYS-----------------------------LVHK--MGTARA 87
           K G  ED FV ++L++ YS                             +V K  +  AR+
Sbjct: 232 KLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSWNTAMAAMVRKGEVDAARS 291

Query: 88  LFDKSPDRDVVTWTTMVDGYGKMG-------------------------------DFENA 116
           +FD+ P++D V+W TM+DGY K G                               D E A
Sbjct: 292 MFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVVSWSTVVSAYCKKGDMEMA 351

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R +F+KMP +N V+W+ +++A ++     E   LF +M+E  ++ +   +VS+L ACA  
Sbjct: 352 RVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGRLFTEMKEAAIELDVVAVVSILAACAES 411

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAM 235
           G +  G  +H + ++  L ++ ++  A++DM+ KCG V+ A  +F+  I  KD+ +WN +
Sbjct: 412 GCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVEKDSVSWNII 471

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G AM+G  +K+L LF +M + G  P   T + VL+ CTH  +V +G   F NM   YG
Sbjct: 472 IGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRFFANMETDYG 531

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           ++P++EHY C+VDLL R G+++EA   I+         +  +WG+LLSACR++  +E   
Sbjct: 532 IKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMP---WEPNEVIWGSLLSACRLHKNVEYAE 588

Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
               +L+ +  ++   + +  NIY EAG   +  K R  +  TG +K  G S IE++   
Sbjct: 589 LAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKARVQMKGTGSQKTAGSSWIELDEAF 648

Query: 416 EEFLAGDNRHAQAGEIYRVI 435
            EF  GD +H ++ +I  +I
Sbjct: 649 HEFTVGDRKHPESDQISDMI 668



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 130/342 (38%), Gaps = 69/342 (20%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
           +HA V++ G   DP   S L+  Y+L+ ++   R +F  +        T ++        
Sbjct: 123 LHAQVLRQGLHRDPRAASKLIASYALLRRVPACRCVFSAAAAPPFAPSTALLA------- 175

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
                              + ++ AY+  S     L++F  M    ++  ++   S L  
Sbjct: 176 -------------------NTLLRAYALNSLPHAALAVFVDMP---LRQRDTFTYSFLIK 213

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC--------------------- 211
                 +T     H++  +    ++  +  A++D YSK                      
Sbjct: 214 ALATAGVTPVRAAHTHVFKLGSVEDTFVGNALIDAYSKNDGLSDAKKVFDEMTTRDVVSW 273

Query: 212 ----------GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
                     G V +A S+F+ +  KD  +WN M+ G A  G+A+++ ELF RM      
Sbjct: 274 NTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELFQRMPGRNVV 333

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
            + +T V+        +M R    +F+ M A       L  +  +V   A+ G+V EA +
Sbjct: 334 -SWSTVVSAYCKKGDMEMAR---VIFDKMPA-----KNLVTWTIMVSACAQKGLVGEAGR 384

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
              E        D     ++L+AC   G + +G R+ R + +
Sbjct: 385 LFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQ 426


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 143/379 (37%), Positives = 212/379 (55%), Gaps = 10/379 (2%)

Query: 63  GEDPFVVSSLLEFYSLVHKMGT------ARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116
           G  P  ++ +   +S+  K G       ARA   +   ++V+  T +++ Y K    + A
Sbjct: 301 GASPNAIT-ITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEA 359

Query: 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           R  F++MP R+ V+WS ++A YS+     E L LF +M+    KPNE  LV VL+ACA L
Sbjct: 360 RHEFDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQL 419

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G+   G  + +Y +   L     L +A++DMY+KCGHV  A SVF  +  K    WN+MI
Sbjct: 420 GSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMI 479

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
            G+A+NG A+ ++ L+ +MV  G QP E TFVA+LT CTHA +V  G+  FE M     V
Sbjct: 480 RGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHV 539

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            PQ+EH AC+VDLL ++G + EA KFI +        +A +W  LLSACR +  +E+   
Sbjct: 540 SPQVEHCACIVDLLCKSGRLWEAYKFICDME---VEPNAVIWSTLLSACRAHADVELAKL 596

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
              KL  +   + S +VL  NIY +AG   +  ++R L+    ++K    S IE++G V 
Sbjct: 597 AAGKLVALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVH 656

Query: 417 EFLAGDNRHAQAGEIYRVI 435
            FL  D  H ++ EIY V+
Sbjct: 657 RFLVQDTYHPRSAEIYNVV 675



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 166/327 (50%), Gaps = 26/327 (7%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
           G   H H +  G   D FV ++L++FY+    M +A   F + P +D +    ++ GY K
Sbjct: 193 GSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPMNCLITGYSK 252

Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
            GD E AR LF+ MP R + SW++++A Y+   +F+E L+LF QM   G  PN   + +V
Sbjct: 253 SGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTV 312

Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
            + CA  G +  G    ++ +   L+ NVI+ TA+++MY KC  +  A   F+ +  +D 
Sbjct: 313 FSICAKTGDLDTGRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDEARHEFDRMPRRDV 371

Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL----- 284
            AW+ MI+G + NG   +SLELF+RM  +  +P E T V VL+ C  A++  D L     
Sbjct: 372 VAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSAC--AQLGSDELGEQIG 429

Query: 285 NLFENMSAVYGVEPQLEHY--ACVVDLLARAGMVEEAEKF---IEEKMGGLGGGDANVWG 339
           N  E+ +        L  Y  + ++D+  + G V  A      +E+K+          W 
Sbjct: 430 NYIESQTL------PLTSYLGSALIDMYTKCGHVARARSVFNRMEQKV-------VVTWN 476

Query: 340 ALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +++    + G  E    ++RK+   GI
Sbjct: 477 SMIRGLALNGFAEDAIALYRKMVGDGI 503



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 5/209 (2%)

Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
           +  AR LF+ +P   A    A ++  S++S  +E + +   +   G       +  VL +
Sbjct: 124 YRAARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKS 183

Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
           CA   A  QG   H +A    +  +V + TA+VD Y+K G + SAL  F+ +  KD    
Sbjct: 184 CAQSAASCQGSQTHCHALVRGMLGDVFVQTALVDFYAKNGDMDSALMAFKEMPVKDPIPM 243

Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
           N +I+G + +GD +++  LFD M +     T  ++ +++    H    R+ L LF+ M  
Sbjct: 244 NCLITGYSKSGDVEEARRLFDSMPRR----TSASWNSMIACYAHGGEFREALTLFDQM-L 298

Query: 293 VYGVEPQLEHYACVVDLLARAGMVEEAEK 321
             G  P       V  + A+ G ++   +
Sbjct: 299 REGASPNAITITTVFSICAKTGDLDTGRR 327



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 107/251 (42%), Gaps = 40/251 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL---ENFGMFVHAHV 57
           MI GY Q   P  S+  +  M     +PN  T   ++ AC  LG     E  G ++ +  
Sbjct: 377 MIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQT 436

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           +        ++ S+L++ Y+    +  AR++F++   + VVTW +M+ G    G  E+A 
Sbjct: 437 LPL----TSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDA- 491

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
                                         ++L+R+M   G++PNE   V++LTAC H G
Sbjct: 492 ------------------------------IALYRKMVGDGIQPNEVTFVALLTACTHAG 521

Query: 178 AITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAM 235
            + +G+ +     K+ H+   V     +VD+  K G +  A      +    +A  W+ +
Sbjct: 522 LVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTL 581

Query: 236 ISGVAMNGDAK 246
           +S    + D +
Sbjct: 582 LSACRAHADVE 592


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 222/398 (55%), Gaps = 36/398 (9%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           GF  N YT+  +++ C  L  L  FG  VHA ++K G   D  V   L            
Sbjct: 449 GFSANKYTYVSVLRCCTSLMNLR-FGTQVHACILKSGLQNDTDVSRML------------ 495

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
                              VD Y + G F +A  +FE++ ER+A SW+ IM+ Y++  + 
Sbjct: 496 -------------------VDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEA 536

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           ++V+  FR M    ++P+++ L   L+ C+ + ++  GL +HS+A +     +V+ + A+
Sbjct: 537 EKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVV-SGAL 595

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           VDMY KCG++  A  +F     +D  AWN +I G + +G   K+L+ F +MV  G +P  
Sbjct: 596 VDMYVKCGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDG 655

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            TFV VL+ C+HA ++ +G   F+++S++YG+ P +EHYAC+VD+L++AG + EAE  I 
Sbjct: 656 ITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLIN 715

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384
           +        D+++W  +L ACRI+  IE+  R   +L E+   D S+ +L  NIY + G 
Sbjct: 716 QMP---LAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYADLGR 772

Query: 385 DMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
             +  +VR ++ + G+KK+PGCS IE+NG +  FL+ D
Sbjct: 773 WSDVTRVRNILLDHGVKKEPGCSWIEINGQIHMFLSQD 810



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 164/390 (42%), Gaps = 68/390 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  +  A     ++  +  M   G  PN +T   ++KAC   G    F   VH  VVK 
Sbjct: 122 MISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSG-GSHSKFTHQVHGQVVKL 180

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
              +DP+V SSL+E Y+                                 G+ + A  + 
Sbjct: 181 NGLDDPYVGSSLVEAYT-------------------------------SCGELDAAETVL 209

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             +PER+ VSW+A++  Y+R  D++ V+ +  ++   G + ++  L +VL  C  LG   
Sbjct: 210 LGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAK 269

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH+   +  LE + +L + +V+MYS+C     A  VF  I   D    +AMIS   
Sbjct: 270 YGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFD 329

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAV-----------LTTCTHAKMVRDGLNLFEN 289
            +  A ++L+LF +M   G +P    FV +           L    HA +V+ G  + + 
Sbjct: 330 RHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKG 389

Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLSACR 346
           +               ++++  + G V++A      I E        D   W  +LSA  
Sbjct: 390 VGDA------------ILNMYVKVGAVQDATVTFDLIHEP-------DTFSWNTILSAFY 430

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
                E G R+++++A  G   FS +  +Y
Sbjct: 431 SGSNCEQGLRIFKQMACEG---FSANKYTY 457



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 48/315 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ M  MG +PN+Y F  +       G   N    VHA++VK GF              +
Sbjct: 341 FVKMSGMGVKPNHYIFVGIAGVASRTGD-ANLCRSVHAYIVKSGF--------------A 385

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
           ++  +G A                 +++ Y K+G  ++A   F+ + E +  SW+ I++A
Sbjct: 386 MLKGVGDA-----------------ILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSA 428

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +   S+ ++ L +F+QM   G   N+   VSVL  C  L  +  G  VH+   +  L+ +
Sbjct: 429 FYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQND 488

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
             ++  +VDMY++ G   SA  VFE +  +DA +W  ++SG A   +A+K +E F  M++
Sbjct: 489 TDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLR 548

Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFE-------NMSAVYGVEPQLEHYACVVDLL 310
              +P++ T    L+ C+    +  GL L         N S V G          +VD+ 
Sbjct: 549 ENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVVSGA---------LVDMY 599

Query: 311 ARAGMVEEAEKFIEE 325
            + G + +AE    E
Sbjct: 600 VKCGNIADAEMLFHE 614



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 124/230 (53%), Gaps = 2/230 (0%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D     ++++ Y K G   +AR +F+ MP R+ V+W+A+++A++   D  + L +F +M 
Sbjct: 84  DTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMN 143

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + G+ PN   L SVL AC+          VH    + +   +  + +++V+ Y+ CG + 
Sbjct: 144 QEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELD 203

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           +A +V  G+  +   +WNA+++G A +GD ++ + + +++V SG + ++ T   VL  C 
Sbjct: 204 AAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCM 263

Query: 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIE 324
              + + G ++  ++    G+E      +C+V++ +R    EEA E FI 
Sbjct: 264 ELGLAKYGQSVHASVIK-RGLETDNVLNSCLVEMYSRCLSAEEAYEVFIR 312



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 142/333 (42%), Gaps = 40/333 (12%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G E + YT P ++K C+ LG L  +G  VHA V+K G   D  + S L+E YS       
Sbjct: 247 GDEISKYTLPTVLKCCMELG-LAKYGQSVHASVIKRGLETDNVLNSCLVEMYS------- 298

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
            R L                         E A E+F ++ E + V  SA+++ + R    
Sbjct: 299 -RCL-----------------------SAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMA 334

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E L LF +M  +G+KPN    V +    +  G       VH+Y  +        +  A+
Sbjct: 335 WEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAI 394

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           ++MY K G V  A   F+ I   D  +WN ++S      + ++ L +F +M   G    +
Sbjct: 395 LNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANK 454

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
            T+V+VL  CT    +R G  +   +    G++   +    +VD+ A++G    A    E
Sbjct: 455 YTYVSVLRCCTSLMNLRFGTQVHACILK-SGLQNDTDVSRMLVDMYAQSGCFTSACLVFE 513

Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           +    L   DA  W  ++S    Y K E   +V
Sbjct: 514 Q----LKERDAFSWTVIMSG---YAKTEEAEKV 539



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 59/108 (54%)

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           + L  CA    + +G  +H+   R  L  +  L  ++++MY KCG +  A  VF+G+ ++
Sbjct: 55  AALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHR 114

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
           D  AW AMIS     GD+ ++L++F RM + G  P   T  +VL  C+
Sbjct: 115 DIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACS 162


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/351 (39%), Positives = 210/351 (59%), Gaps = 7/351 (1%)

Query: 85  ARALFDKSPD--RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           AR LF  S     DVV+WTTMV G  ++G  ++ARE+F+ MP RN VSW+++++ Y +  
Sbjct: 150 ARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKAD 209

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            F + L +F +M+ +G++ N     S L AC   GA+ +G  ++ + ++  +E +  LAT
Sbjct: 210 RFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLAT 269

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           AVVDMY KCG V  A  VF+ +  +    WN MI G A++G    +LELF +M  +G  P
Sbjct: 270 AVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAP 329

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            + T + VLT C HA  V +G     ++ + +G+EP+ EHY C+VDL  RAG ++EA+K 
Sbjct: 330 DDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKV 389

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I+E        D  V GALL AC+I+G +++G  +  ++ ++   +   +VL  N+   A
Sbjct: 390 IDEMP---MDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGA 446

Query: 383 G-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           G WD E  KVR+L+ E  + K+ G SVIEV+G   EF  G+ RH QA EIY
Sbjct: 447 GRWD-EVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIY 496


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 227/435 (52%), Gaps = 35/435 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++ GY+  +    +V  +  M + G   N+ T   LI ACV    LE  G  +H   +K+
Sbjct: 114 LVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLE-LGSSLHCSTLKY 172

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF                               D DV      +  Y K G    A++LF
Sbjct: 173 GF-------------------------------DSDVSVVNCFITMYMKCGSVNYAQKLF 201

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++MP +  +SW+A+++ Y++      VL L+R M   G+ P+   LV VL++CA+LGA +
Sbjct: 202 DEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQS 261

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  V    +      N  L  A+++MY++CG++  A +VF+G+  +   +W A+I G  
Sbjct: 262 VGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYG 321

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G  + +++LF  M++SG +P  T FV VL+ C+HA +   GL  F+ M   Y +EP  
Sbjct: 322 MHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGP 381

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY+C+VDLL RAG ++EA+  IE         D  VWGALL AC+I+  +E+    + +
Sbjct: 382 EHYSCMVDLLGRAGRLKEAQTLIESMP---IKPDGAVWGALLGACKIHKNVELAELAFER 438

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   +   +VL  NIY  A       ++R ++ E  +KK PGCS +E+ G V  F+ 
Sbjct: 439 VIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYVELKGRVHPFIV 498

Query: 421 GDNRHAQAGEIYRVI 435
           GD  H Q+ EIYRV+
Sbjct: 499 GDRNHLQSDEIYRVL 513



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 161/352 (45%), Gaps = 41/352 (11%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           Y  ML  G  PN +TFP  +K+C  L  L   G   H  + K G   +PFV + L+  Y 
Sbjct: 28  YPQMLRHGDRPNAFTFPFALKSCAALS-LPILGSQFHGQITKVGCVFEPFVQTGLISMY- 85

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEK--MPERNAVSWSAIM 135
                                   ++VD         NAR++FE+     +  V ++A++
Sbjct: 86  ---------------------CKGSLVD---------NARKVFEENFHSRKLTVCYNALV 115

Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           + Y   S   + + LFRQM E G+  N   L+ ++ AC     +  G  +H    +Y  +
Sbjct: 116 SGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFD 175

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +V +    + MY KCG V+ A  +F+ +  K   +WNAM+SG A NG A   LEL+  M
Sbjct: 176 SDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNM 235

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNL-FENMSAVYGVEPQLEHYACVVDLLARAG 314
             +G  P   T V VL++C +      G  + F+  ++ +   P L +   ++++ AR G
Sbjct: 236 DMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCG 293

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
            + +A+   +    G+       W A++    ++G  E+  ++++++   GI
Sbjct: 294 NLTKAQAVFD----GMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGI 341



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 123/317 (38%), Gaps = 45/317 (14%)

Query: 127 NAVS--WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           NA+S  W+  +   ++   F + LSL+ QM   G +PN       L +CA L     G  
Sbjct: 2   NALSTPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQ 61

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI--SNKDAGAWNAMISGVAMN 242
            H    +        + T ++ MY K   V +A  VFE    S K    +NA++SG   N
Sbjct: 62  FHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSN 121

Query: 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
                ++ LF +M + G      T + ++  C     +  G +L  + +  YG +  +  
Sbjct: 122 SKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSV 180

Query: 303 YACVVDLLARAGMVEEAEKFIEE-KMGGLGGGDANVWG---------------------- 339
             C + +  + G V  A+K  +E  + GL   +A V G                      
Sbjct: 181 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 240

Query: 340 --------ALLSACRIYGKIEVGNRVWRKLAEMGITD--FSTHVLSYNIYKEAGWDMEAN 389
                    +LS+C   G   VG+ V  K+   G T   F  + L  N+Y   G   +A 
Sbjct: 241 HPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNAL-INMYARCGNLTKAQ 299

Query: 390 KV------RKLISETGM 400
            V      R L+S T +
Sbjct: 300 AVFDGMPERTLVSWTAI 316


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 140/351 (39%), Positives = 210/351 (59%), Gaps = 7/351 (1%)

Query: 85  ARALFDKSPD--RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
           AR LF  S     DVV+WTTMV G  ++G  ++ARE+F+ MP RN VSW+++++ Y +  
Sbjct: 150 ARVLFRTSGGGALDVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKAD 209

Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
            F + L +F +M+ +G++ N     S L AC   GA+ +G  ++ + ++  +E +  LAT
Sbjct: 210 RFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLAT 269

Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
           AVVDMY KCG V  A  VF+ +  +    WN MI G A++G    +LELF +M  +G  P
Sbjct: 270 AVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAP 329

Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
            + T + VLT C HA  V +G     ++ + +G+EP+ EHY C+VDL  RAG ++EA+K 
Sbjct: 330 DDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKV 389

Query: 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382
           I+E        D  V GALL AC+I+G +++G  +  ++ ++   +   +VL  N+   A
Sbjct: 390 IDEMP---MDPDLAVLGALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGA 446

Query: 383 G-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
           G WD E  KVR+L+ E  + K+ G SVIEV+G   EF  G+ RH QA EIY
Sbjct: 447 GRWD-EVGKVRRLMDERNVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIY 496


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 149/425 (35%), Positives = 237/425 (55%), Gaps = 38/425 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           MI GY +A   + +V  + +M    GFEP+  +   ++ AC  LG LE  G +V   VV+
Sbjct: 188 MIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLE-LGRWVEGFVVE 246

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G   + ++ S+L+  Y+                               K GD  +AR +
Sbjct: 247 RGMTLNSYIGSALISMYA-------------------------------KCGDLGSARRI 275

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ M  R+ ++W+A+++ Y++     E +SLF  M+E  +  N+  L +VL+ACA +GA+
Sbjct: 276 FDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGAL 335

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  +  YA +   + ++ +ATA++DMY+KCG + SA  VF+ +  K+  +WNAMIS +
Sbjct: 336 DLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISAL 395

Query: 240 AMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           A +G AK++L LF  M     G +P + TFV +L+ C HA +V +G  LF+ MS ++G+ 
Sbjct: 396 ASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLV 455

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P++EHY+C+VDLLARAG + EA   I EKM      D    GALL ACR    +++G RV
Sbjct: 456 PKIEHYSCMVDLLARAGHLYEAWDLI-EKMP--EKPDKVTLGALLGACRSKKNVDIGERV 512

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            R + E+  ++   +++S  IY       ++ ++R L+ + G+ K PGCS IEV   + E
Sbjct: 513 IRMILEVDPSNSGNYIISSKIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHE 572

Query: 418 FLAGD 422
           F AGD
Sbjct: 573 FHAGD 577



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 176/360 (48%), Gaps = 12/360 (3%)

Query: 13  LSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           L  F Y  +L   +   PN+Y F  +I+A           + +   ++      + F   
Sbjct: 61  LKNFTYASLLFSHIAPHPNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFP 120

Query: 71  SLLEFYSLVHKMGTARA----LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER 126
                 + +  +  ARA    +F  +   D  T  +++  Y + G    AR++F+++P R
Sbjct: 121 FFFLSCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRR 180

Query: 127 NAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           + VSW++++A Y++    +E + +F +M +  G +P+E  LVSVL AC  LG +  G WV
Sbjct: 181 DLVSWNSMIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWV 240

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
             +     +  N  + +A++ MY+KCG + SA  +F+G++ +D   WNA+ISG A NG A
Sbjct: 241 EGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMA 300

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305
            +++ LF  M +      + T  AVL+ C     +  G  + E  S   G +  +     
Sbjct: 301 DEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQ-RGFQHDIFVATA 359

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           ++D+ A+ G +  A++  +E    +   +   W A++SA   +GK +    +++ +++ G
Sbjct: 360 LIDMYAKCGSLASAQRVFKE----MPQKNEASWNAMISALASHGKAKEALSLFQCMSDEG 415


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 146/425 (34%), Positives = 232/425 (54%), Gaps = 41/425 (9%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY +A   K ++  +  M + GFEP+  T   ++ AC  LG L              
Sbjct: 201 MISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDL-------------- 246

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                      LLE  ++  K+G +  L  K           ++  YGK GD ++AR +F
Sbjct: 247 -------TTGRLLEKMAITKKIGLSTFLGSK-----------LITMYGKCGDLDSARRVF 288

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +M +++ V+W+A++  YS+     E   LF +M++ G+ P+   L +VL+AC  +GA+ 
Sbjct: 289 NQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 348

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  + ++A    L+ N+ +AT +VDMY KCGH+  AL VFE +  K+   WNAMI+  A
Sbjct: 349 LGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYA 408

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
             G AK++L LFD+M      P++ TF+ VL+ C HA +V  G   F  MS+++G+ P++
Sbjct: 409 HQGHAKEALLLFDQM---PVPPSDVTFIGVLSACVHAGLVDQGCRYFHEMSSLFGLVPKI 465

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY  ++DLL+RAG+++EA +F+E      G  D  +  A+L AC     + +  +  R 
Sbjct: 466 EHYTNIIDLLSRAGLLDEAWEFMER---FPGKPDEIMLAAILGACHKRKDVAIREKAMRM 522

Query: 361 LAEMG-ITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           L EM    +   +V+S  +  +   WD E+ K+R L+ + G+ K PGCS IE+NG + EF
Sbjct: 523 LMEMKEAKNAGNYVISSKVLADMKMWD-ESAKMRALMRDRGVVKTPGCSWIEINGELMEF 581

Query: 419 LAGDN 423
           LAG +
Sbjct: 582 LAGSD 586



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 163/332 (49%), Gaps = 17/332 (5%)

Query: 21  MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80
           +L +  EPN+Y+F  +I+    +       + ++  +   G   D F  + +        
Sbjct: 84  LLSVTEEPNHYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKRE 143

Query: 81  KMGTARA----LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
           ++G  R+    LF    +RD     +++  Y K G    AR++F+++ +R  VSW+++++
Sbjct: 144 EIGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMIS 203

Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
            YS     K+ + LFR+M+E G +P+E  LVS+L ACAHLG +T G  +   A    +  
Sbjct: 204 GYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGL 263

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           +  L + ++ MY KCG + SA  VF  +  KD  AWNAMI+  + NG + ++ +LF  M 
Sbjct: 264 STFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEME 323

Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLAR 312
           K+G  P   T   VL+ C     +  G  +       +  E  L+H   V    VD+  +
Sbjct: 324 KTGVSPDAGTLSTVLSACGSVGALELGKRI-----ETHASEISLQHNIYVATGLVDMYGK 378

Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
            G +EEA +  E     +   +   W A+++A
Sbjct: 379 CGHIEEALRVFE----AMPVKNEATWNAMITA 406


>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 488

 Score =  254 bits (648), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 155/483 (32%), Positives = 236/483 (48%), Gaps = 79/483 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY        SV  Y D+L  G +P+++T+P ++K+C  LG   + G  VH  ++K 
Sbjct: 1   MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWD-GKKVHCRILKT 59

Query: 61  GFGEDPFVVSSLLEFYSLVHK--------------------------------------- 81
           GF  +  V  +L   Y    K                                       
Sbjct: 60  GFSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTS 119

Query: 82  ---MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
              +  A+ LF+   DRD V+W TM+ GY K+G+   ARELFEKMPE+N VSW+++++AY
Sbjct: 120 TGDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAY 179

Query: 139 SRI-------------------------------SDFKEVLSLFRQMQEVGMKPNESGLV 167
           ++                                 DF+E L LF QM   G+ P+    V
Sbjct: 180 AKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFV 239

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           SV +AC+HLG +  G  +H YA     +  VI ATA+++MY+KCG ++ A ++F  I  K
Sbjct: 240 SVFSACSHLGNLMLGTKIH-YAIDDFSQLGVIAATALIEMYAKCGDINRAFNLFIKIGKK 298

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           D   WN M+  +A++G A+ +L+LF  M K G +P + TF+  L  C+H  MV +G  +F
Sbjct: 299 DVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIF 358

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
           + M   Y + P++EH+ C+VDLL+R G +EEA   + +KM      D  +WGALL  C++
Sbjct: 359 DMMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVV-DKMP--FEADVAIWGALLGGCKL 415

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGC 406
            G  +    +  +  ++   +   HV   N+Y     W    N   K+ +E  +KK    
Sbjct: 416 RGDFKRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQS 475

Query: 407 SVI 409
           SVI
Sbjct: 476 SVI 478


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  254 bits (648), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 141/343 (41%), Positives = 201/343 (58%), Gaps = 8/343 (2%)

Query: 102 TMVDGYGKMG--DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG- 158
           T++D Y K G  D   AR+LF+ M +R+ VSW+ ++A Y++     E L L+ +M  VG 
Sbjct: 232 TIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGG 290

Query: 159 -MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
            ++ N   L +VL ACAH GAI  G  +H+   R  LE NV + T+VVDMYSKCG V  A
Sbjct: 291 DVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMA 350

Query: 218 LSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
              F+ I  K+  +W+AMI+G  M+G  +++L +F  M KSG +P   TF+ VL  C+HA
Sbjct: 351 WKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHA 410

Query: 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337
            ++ +G   +  M   +G+EP +EHY C+VDLL RAG ++EA   I+E        DA +
Sbjct: 411 GLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMK---VKPDAAL 467

Query: 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397
           WGALLSACRIY  +E+      +L E+  T+   +VL  NIY EAG   E  ++R L+  
Sbjct: 468 WGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKT 527

Query: 398 TGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
            G++K PG S +E+ G    F  GD  H Q  EIY  +   L+
Sbjct: 528 RGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLE 570



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 36/241 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
           MI  Y Q      ++  Y  ML +G     N  T   ++ AC   G ++  G  +H  VV
Sbjct: 265 MIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQT-GKRIHNQVV 323

Query: 59  KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
           + G  ++ +V                                T++VD Y K G  E A +
Sbjct: 324 RMGLEDNVYV-------------------------------GTSVVDMYSKCGKVEMAWK 352

Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
            F+K+  +N +SWSA++A Y      +E L +F  M++ G+KPN    ++VL AC+H G 
Sbjct: 353 AFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGL 412

Query: 179 ITQG-LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMI 236
           +++G  W ++    + +E  V     +VD+  + G +  A  + + +  K DA  W A++
Sbjct: 413 LSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALL 472

Query: 237 S 237
           S
Sbjct: 473 S 473


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 238/433 (54%), Gaps = 38/433 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y      + ++  Y  ML+ G +P+N+T P ++KAC  L  +   G  +H  V++ 
Sbjct: 130 LIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGE-GRVIHERVIRS 188

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+                               +RDV     +VD Y K G   +AR +F
Sbjct: 189 GW-------------------------------ERDVFVGAALVDMYAKCGCVVDARHVF 217

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           +K+ +R+AV W++++AAY++     E LSL  +M   G++P E+ LV+V+++ A +  + 
Sbjct: 218 DKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLP 277

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  +H +  R+  + N  + TA++DMY+KCG V  A  +FE +  K   +WNA+I+G A
Sbjct: 278 HGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYA 337

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G A ++L+LF+RM+K   QP   TFV  L  C+  +++ +G  L+  M     + P +
Sbjct: 338 MHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTV 396

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDLL   G ++EA   I + M  +   D+ VWGALL++C+ +G +E+      K
Sbjct: 397 EHYTCMVDLLGHCGQLDEAYDLIRQ-MDVM--PDSGVWGALLNSCKTHGNVELAEVALEK 453

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           L E+   D   +V+  N+Y ++G W+  A ++R+L+ + G+KK   CS IEV   V  FL
Sbjct: 454 LIELEPDDSGNYVILANMYAQSGKWEGVA-RLRQLMIDKGIKKNIACSWIEVKNKVYAFL 512

Query: 420 AGDNRHAQAGEIY 432
           +GD  H  +G IY
Sbjct: 513 SGDVSHPNSGAIY 525



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 147/321 (45%), Gaps = 37/321 (11%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           N+Y +  L+++C+    LE  G  +HA + + G   +  + + L+ FYS+ + +  A  L
Sbjct: 57  NHYYYASLLESCISAKALEP-GKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHL 115

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
           FDK P  ++  W  ++  Y   G  E A                               +
Sbjct: 116 FDKIPKGNLFLWNVLIRAYAWNGPHETA-------------------------------I 144

Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
           SL+ QM E G+KP+   L  VL AC+ L  I +G  +H    R   E++V +  A+VDMY
Sbjct: 145 SLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMY 204

Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
           +KCG V  A  VF+ I ++DA  WN+M++  A NG   +SL L   M   G +PTE T V
Sbjct: 205 AKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLV 264

Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
            V+++      +  G  +       +G +   +    ++D+ A+ G V+ A    E    
Sbjct: 265 TVISSSADIACLPHGREI-HGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFER--- 320

Query: 329 GLGGGDANVWGALLSACRIYG 349
            L       W A+++   ++G
Sbjct: 321 -LREKRVVSWNAIITGYAMHG 340


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 233/442 (52%), Gaps = 39/442 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IRGY  ++ P  ++  Y DM   G  PN+YTF  ++ AC  L  L   G  +H+ +VK 
Sbjct: 38  IIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVLNACCKLLRLCE-GQELHSQIVKA 96

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   +  +++ L++ Y+    M  A  +FD+                             
Sbjct: 97  GLDFETPLLNGLIKLYAACGCMDYACVMFDE----------------------------- 127

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             MPE ++ SWS +++ YS+     E L L R+MQ   +  +   L SV+  C  LG + 
Sbjct: 128 --MPEPDSASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLD 185

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G WVHSY  +  ++ +V+L TA+V MYSKCG + +AL VF+G++ +D   W+ MI+G A
Sbjct: 186 LGKWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYA 245

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           ++G  +K+L+LFD M +S   P   TF +VL+  +H+ +V  G  +FE M   Y + PQ+
Sbjct: 246 IHGHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQI 305

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVW 358
           +HY C+VDL  RAGMV  A KFI+         + NV  W  LL AC+ +G   +G  + 
Sbjct: 306 KHYGCMVDLFCRAGMVGHAHKFIQTM-----PIEPNVVLWRTLLGACKTHGYKGLGEHIS 360

Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
           RK+ ++  +    +V   N+Y   G      +VR L+ E   KK+ G S IE+N +V +F
Sbjct: 361 RKILKLDPSSPENYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKF 420

Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
           + G+  H +  +IY ++H   +
Sbjct: 421 IMGEESHPKREKIYGMLHQMAR 442



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 104/242 (42%), Gaps = 5/242 (2%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           G    A  +F      N   W+ I+  YS        ++L++ M   G+ PN      VL
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
            AC  L  + +G  +HS   +  L+    L   ++ +Y+ CG +  A  +F+ +   D+ 
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
           +W+ M+SG + NG A ++L+L   M          T  +V+  C    ++  G  +   +
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYI 194

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
               GV+  +     +V + ++ G ++ A K  +    G+   D   W  +++   I+G 
Sbjct: 195 DK-EGVKIDVVLGTALVGMYSKCGSLDNALKVFQ----GMAERDVTTWSIMIAGYAIHGH 249

Query: 351 IE 352
            E
Sbjct: 250 DE 251


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 151/497 (30%), Positives = 256/497 (51%), Gaps = 70/497 (14%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y+Q    + +V  +LD L+ GFEP+ YT   +I AC  LG +   G+ +H+  ++ 
Sbjct: 225 LISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVR-LGLQLHSLALRM 283

Query: 61  GFGEDPFVVSSLLEFYS---LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA- 116
           GF  D  V   L++ Y+   +   M  A  +F++    DV++WT ++ GY + G  EN  
Sbjct: 284 GFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKV 343

Query: 117 ----RELFEKMPERNAVSWSAIMAAYSRISD----------------------------- 143
                E+  +  + N +++S+I+ A + ISD                             
Sbjct: 344 MVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSM 403

Query: 144 ------FKEVLSLFRQMQE---------------------VGMKPNESGLVSVLTACAHL 176
                  +E   +F Q+ E                     + M  + S   S+++A A +
Sbjct: 404 YAESGCMEEARRVFNQLYERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASV 463

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G +T+G  +H+   +     +  ++ ++V MYS+CG++  A   F  + +++  +W +MI
Sbjct: 464 GMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMI 523

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           SG+A +G A+++L LF  M+ +G +P + T++AVL+ C+H  +VR+G   F +M   +G+
Sbjct: 524 SGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGL 583

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
            P++EHYAC+VDLLAR+G+V+EA +FI E        DA VW  LL ACR +  IEVG  
Sbjct: 584 IPRMEHYACMVDLLARSGLVKEALEFINEMP---LKADALVWKTLLGACRSHDNIEVGEI 640

Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVV 415
             + + E+   D + +VL  N+Y +AG WD E  ++R  + +  + K+ G S +EV    
Sbjct: 641 AAKNVIELEPRDPAPYVLLSNLYADAGLWD-EVARIRSAMRDNNLNKETGLSWMEVENTT 699

Query: 416 EEFLAGDNRHAQAGEIY 432
            EF AGD  H +A +IY
Sbjct: 700 HEFRAGDTSHPRAQDIY 716



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 47/316 (14%)

Query: 20  DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79
           +ML+ G  PN YT   +  AC           F H                       LV
Sbjct: 141 EMLESGLLPNAYTLCAVAHAC-----------FPH-----------ELYCLVGGVVLGLV 178

Query: 80  HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
           HKMG            D+   + ++D   + GD  +AR++F+ + E+  V W+ +++ Y 
Sbjct: 179 HKMGLWGT--------DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYV 230

Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI 199
           +    +E + +F    E G +P+   + S+++AC  LG++  GL +HS A R     +  
Sbjct: 231 QGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDAC 290

Query: 200 LATAVVDMYSKCGHVHSALS----VFEGISNKDAGAWNAMISGVAMNG-DAKKSLELFDR 254
           ++  +VDMY+K  ++  A+     VFE +   D  +W A+ISG   +G    K + LF  
Sbjct: 291 VSCGLVDMYAK-SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGE 349

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF-----ENMSAVYGVEPQLEHYACVVDL 309
           M+    +P   T+ ++L  C +      G  +       N +A + V   L      V +
Sbjct: 350 MLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNAL------VSM 403

Query: 310 LARAGMVEEAEKFIEE 325
            A +G +EEA +   +
Sbjct: 404 YAESGCMEEARRVFNQ 419



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 123/267 (46%), Gaps = 33/267 (12%)

Query: 94  DRDVVTWTTMVDGYGKMGDFENARELFEKMPE-RNAVSWSAIMAAYSRISDFKEVLSLFR 152
           DRD V   +++  Y + G   +AR +F+ M   R+ VSW+A+ +  +R    +E L L  
Sbjct: 81  DRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIG 140

Query: 153 QMQEVGMKPNESGLVSVLTAC------------AHLGAITQGLWVHSYAKRYHLEKNVIL 200
           +M E G+ PN   L +V  AC                    GLW            ++ +
Sbjct: 141 EMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLW----------GTDIAV 190

Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260
            +A++DM ++ G + SA  VF+G+  K    W  +IS       A++++E+F   ++ G 
Sbjct: 191 GSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGF 250

Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMV 316
           +P   T  ++++ CT    VR GL L  +++   G        ACV    VD+ A++  +
Sbjct: 251 EPDRYTMSSMISACTELGSVRLGLQL-HSLALRMGFASD----ACVSCGLVDMYAKSN-I 304

Query: 317 EEAEKFIEEKMGGLGGGDANVWGALLS 343
           E+A  +  +    +   D   W AL+S
Sbjct: 305 EQAMDYANKVFERMRKNDVISWTALIS 331



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 10/154 (6%)

Query: 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKSLELF 252
           L+++ ++A +++ +YS+CG V SA +VF+G+   +D  +W AM S +A NG  ++SL L 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLI 139

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKM---VRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
             M++SG  P   T  AV   C   ++   V   +    +   ++G +  +   + ++D+
Sbjct: 140 GEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVG--SALIDM 197

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
           LAR G +  A K  +    GL      VW  L+S
Sbjct: 198 LARNGDLASARKVFD----GLIEKTVVVWTLLIS 227


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 130/335 (38%), Positives = 200/335 (59%), Gaps = 3/335 (0%)

Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
           T +   Y ++ + E+AR LF++  E++  SW+A+++ Y++    ++ +SLF++MQ+  ++
Sbjct: 347 TALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVR 406

Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
           PN   + S+L+ACA LGA++ G WVH    R   E N+ ++TA++DMY+KCG +  A  +
Sbjct: 407 PNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRL 466

Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
           F  +  K+A  WNAMISG  ++G   ++L LF+ M+ S   PT  TF++VL  C+HA +V
Sbjct: 467 FSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLV 526

Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
           R+G  +F +M   +G EP  EHYAC+VDLL RAG +++A  FI  KM    G    VWGA
Sbjct: 527 REGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFI-RKMPVEPG--PPVWGA 583

Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
           LL AC I+    +      KL E+   +   +VL  NIY       EA  VR ++    +
Sbjct: 584 LLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKL 643

Query: 401 KKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            K PGC++IEV   +  F +GD  H QA  IY ++
Sbjct: 644 AKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAML 678



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 143/310 (46%), Gaps = 21/310 (6%)

Query: 50  GMFVHAHVVKFGFGEDPFVVSSLL----EFYSLVHKMGTARALFDKSPDRDVVTWTTMVD 105
            + +   +VK G G D   V+++L    E   L   MG                 T +  
Sbjct: 191 AILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLAC 250

Query: 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
            Y K G+ E AR LF ++ + + VS++A+++ Y+  ++ +  + LF+++   G K N S 
Sbjct: 251 LYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSS 310

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
           +V ++      G +     +H +  +  +  N  ++TA+  +YS+   + SA  +F+  S
Sbjct: 311 IVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESS 370

Query: 226 NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH------AKM 279
            K   +WNAMISG A NG  +K++ LF  M K   +P   T  ++L+ C         K 
Sbjct: 371 EKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKW 430

Query: 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339
           V D +N     S ++ V   L      +D+ A+ G + EA++        +   +A  W 
Sbjct: 431 VHDLINRESFESNIF-VSTAL------IDMYAKCGSITEAQRLFSM----MPEKNAVTWN 479

Query: 340 ALLSACRIYG 349
           A++S   ++G
Sbjct: 480 AMISGYGLHG 489



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 146/336 (43%), Gaps = 37/336 (11%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           D+   + +V  Y K      AR++F+ M ER+ V W+ +++   + S F E + +F  M 
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215
           + G+  + + + +VL   A L  +  G+ +   A +     +  + T +  +YSKCG + 
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259

Query: 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV----- 270
           +A  +F  I   D  ++NAMISG   N + + S+ LF  ++ SG +   ++ V +     
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFF 319

Query: 271 ------LTTCTHA-----------------KMVRDGLNLFENMSAVY--GVEPQLEHYAC 305
                 LT C H                    V   LN  E+   ++    E  L  +  
Sbjct: 320 PFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNA 379

Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG----NRVWRKL 361
           ++   A+ G+ E+A    +E        +     ++LSAC   G + +G    + + R+ 
Sbjct: 380 MISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRES 439

Query: 362 AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397
            E  I  F +  L  ++Y + G   EA ++  ++ E
Sbjct: 440 FESNI--FVSTAL-IDMYAKCGSITEAQRLFSMMPE 472



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/297 (20%), Positives = 126/297 (42%), Gaps = 10/297 (3%)

Query: 71  SLLEFYSLVHKMGTARA-LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +L+   S +H++    A +       D+VT T +      +   + A  LF  +P  +  
Sbjct: 15  TLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLF 74

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
            ++ ++ A+S  +     +SL+  +++   ++P+      V++  + LG           
Sbjct: 75  LYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIV 134

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
           A       ++ + +A+V  Y K   V +A  VF+G+  +D   WN M+SG+  N    ++
Sbjct: 135 AG---FGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEA 191

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
           + +F  MVK G     TT  AVL      + +  G+ + + ++   G          +  
Sbjct: 192 ILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGI-QCLAMKVGFHSHAYVITGLAC 250

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
           L ++ G +E A        G +G  D   + A++S      + E   R++++L   G
Sbjct: 251 LYSKCGEIETARLL----FGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSG 303


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 244/438 (55%), Gaps = 36/438 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+RG+++    + ++  Y +M + G +P+N+T+P L+KAC  L  +E  GM VHAH++K 
Sbjct: 59  MMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEE-GMQVHAHILKL 117

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D FV +SL+  Y                               GK G+      +F
Sbjct: 118 GLENDVFVQNSLISMY-------------------------------GKCGEIGVCCAVF 146

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAI 179
           E+M ER+  SWSA++ A++ +  + + L L   M   G  +  ES LVSVL+AC HLGA+
Sbjct: 147 EQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGAL 206

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G  VH +  R     NVI+ T++++MY KCG ++  + +F+ ++ K+  +++ MISG+
Sbjct: 207 DLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGL 266

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
           AM+G  ++ L +F  M++ G +P +  +V VL  C+HA +V++GL  F  M   +G+EP 
Sbjct: 267 AMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPT 326

Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
           ++HY C+VDL+ RAG ++EA + I  K   +   D  +W +LLSA +++  ++ G    +
Sbjct: 327 IQHYGCMVDLMGRAGKIDEALELI--KSMPMEPNDV-LWRSLLSASKVHNNLQAGEIAAK 383

Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           +L ++     S +V+  N+Y +A    +  + R  +   G+ ++PG S++EV   +  F+
Sbjct: 384 QLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFV 443

Query: 420 AGDNRHAQAGEIYRVIHS 437
           + D  H Q+  +Y +++ 
Sbjct: 444 SQDAGHPQSESVYEMLYQ 461



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 107/224 (47%), Gaps = 30/224 (13%)

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           HA ++K G   D F  S+L+             AL D         W          G  
Sbjct: 8   HARILKXGLFXDSFCASNLV----------ATCALSD---------W----------GSM 38

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           + A  +F +M E  +  ++ +M  + +  + +E L  +++M E G+KP+     ++L AC
Sbjct: 39  DYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKAC 98

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           A L A+ +G+ VH++  +  LE +V +  +++ MY KCG +    +VFE ++ +   +W+
Sbjct: 99  ARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWS 158

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTH 276
           A+I+  A  G     L L   M   G  +  E+  V+VL+ CTH
Sbjct: 159 ALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTH 202


>gi|297843840|ref|XP_002889801.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335643|gb|EFH66060.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 467

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 231/416 (55%), Gaps = 11/416 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +IR Y+     K S+  +  ML    +PNN TFP LIKA      + + G+ +H    + 
Sbjct: 57  LIRSYLTTGQYKASLALFTHMLASQVQPNNLTFPSLIKAACSSFSVSS-GVALHGQAFRR 115

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   DPFV +S + FY  V  + ++R +FD   D  VV   +++D  G+ G+  +A ELF
Sbjct: 116 GVLWDPFVQTSFVRFYGEVGDLKSSRKMFDDILDPCVVACNSLLDACGRNGEMNSAFELF 175

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAHL- 176
           +KMP  + VSW+ ++  +S+     + L +F +M   Q   + PNE+  V VL++CA+  
Sbjct: 176 QKMPVTDVVSWTTVINGFSKNGLHAKALMVFGEMIQNQRAVITPNEATFVCVLSSCANFD 235

Query: 177 -GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
            G I  G  +H Y     +    IL TA++DMY K G +  AL++F  I +K   AWNA+
Sbjct: 236 QGGIRLGKQIHGYILTKEIILTPILGTALLDMYGKAGDLEMALTIFHQIRDKKVCAWNAI 295

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I  +A NG  K++LE+F+ M  S   P   T +A+LT C   K+V  G+ LF ++ + + 
Sbjct: 296 IPALASNGRPKQTLEMFEMMKSSNVHPNGITLLAILTACARYKLVDLGIQLFSSICSEFK 355

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
           + P  EHY C+VDL+ RAG++ +A  FI+         DA+V+GALL AC+I+   E+GN
Sbjct: 356 IIPTSEHYGCIVDLIGRAGLLVDAANFIKNLP---FEPDASVFGALLGACKIHENAELGN 412

Query: 356 RVWRKLAEMGITDFSTHV-LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410
           +V ++L  +       +V LS     ++ W  EA ++RK + E G++K P  SV+ 
Sbjct: 413 KVGKQLIVLQPQHCGQYVALSMLNALDSNWS-EAEQMRKAMIEAGIRKIPAYSVLS 467



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 2/181 (1%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           ++ ++ +Y     +K  L+LF  M    ++PN     S++ A     +++ G+ +H  A 
Sbjct: 54  YNTLIRSYLTTGQYKASLALFTHMLASQVQPNNLTFPSLIKAACSSFSVSSGVALHGQAF 113

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           R  +  +  + T+ V  Y + G + S+  +F+ I +    A N+++     NG+   + E
Sbjct: 114 RRGVLWDPFVQTSFVRFYGEVGDLKSSRKMFDDILDPCVVACNSLLDACGRNGEMNSAFE 173

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           LF +M  +      T          HAK +     + +N  AV  + P    + CV+   
Sbjct: 174 LFQKMPVTDVVSWTTVINGFSKNGLHAKALMVFGEMIQNQRAV--ITPNEATFVCVLSSC 231

Query: 311 A 311
           A
Sbjct: 232 A 232


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 240/412 (58%), Gaps = 6/412 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N  K  +  + +M  +    ++ T    I A   L   E  G ++  ++ + 
Sbjct: 185 IICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE-MGDYLVKYIDEH 243

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D ++ ++L++ Y     +  A  +F +  ++++V+W  M+ GY K+G+   A++LF
Sbjct: 244 GVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLF 303

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MP R+ +SW++++  YS      E + LF++M    +KP+E  + + L+ACAHLG++ 
Sbjct: 304 NEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLD 363

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y +++ ++ +V +  +++DMY KCG V  AL VF  +  +D+ +W ++ISG+A
Sbjct: 364 AGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLA 423

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG A+ +L +FD+M+K G  PT  TFV VL  C H  +V  G+  F++M   Y + P++
Sbjct: 424 VNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEM 483

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY CVVDLL R+G ++ A  FI +KM  +   D  +W  LLSAC+++G + +   V +K
Sbjct: 484 KHYGCVVDLLCRSGYLDMAYNFI-KKMPIV--PDVVIWRILLSACKLHGNLVLAEIVSKK 540

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEV 411
           L  +  ++   +VLS + Y  +  WD +  K+RKL+  T ++K    S IEV
Sbjct: 541 LLVLDPSNNGNYVLSSSTYAGSDRWD-DVIKIRKLMEVTNLQKPCAYSSIEV 591



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 170/397 (42%), Gaps = 68/397 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G  +++ P  ++  Y  M   G + ++ TF  L K+C  +  +   G  V  H +K 
Sbjct: 84  MIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQ-GQMVRVHSMKL 142

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV ++L+  Y    ++  A+ +FD   +RDVV+W +++ GY +   F       
Sbjct: 143 GFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRF------- 195

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
                                   K+VL LFR+MQ + ++ +   ++  ++A   L    
Sbjct: 196 ------------------------KKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE 231

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G ++  Y   + +  ++ L   ++DMY + G +  A  VF  +  K+  +WNAMI G A
Sbjct: 232 MGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYA 291

Query: 241 MNGD---AKK----------------------------SLELFDRMVKSGTQPTETTFVA 269
             G+   AKK                            +++LF  M+ S  +P E T   
Sbjct: 292 KVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVAT 351

Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
            L+ C H   +  G  + + +   + ++  +     ++D+  + G+VE+A +   +    
Sbjct: 352 ALSACAHLGSLDAGEAVHDYIRK-HDIKSDVFVGNSLIDMYCKCGVVEKALQVFND---- 406

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
           +   D+  W +++S   + G  E    V+ ++ + GI
Sbjct: 407 MKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGI 443



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/331 (18%), Positives = 135/331 (40%), Gaps = 39/331 (11%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLV-HKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           +HA +V+     DP  +S +++ Y+L    +  A  +F++     ++ W  M+ G  K  
Sbjct: 33  LHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSK-S 91

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
           D  N                              + +  +  M   G++ +    + +  
Sbjct: 92  DRPN------------------------------DAIHFYNTMYYKGIQGSHLTFIFLFK 121

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           +CA +  + QG  V  ++ +   E  + ++ A++ MY   G +  A  VF+G+  +D  +
Sbjct: 122 SCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVS 181

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN++I G       KK L+LF  M     +    T +  ++          G  L + + 
Sbjct: 182 WNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYID 241

Query: 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSACRIYGK 350
             +GV   L     ++D+  R GM++ A + F + K   +       W A++      G 
Sbjct: 242 E-HGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVS-----WNAMIMGYAKVGN 295

Query: 351 IEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
           +    +++ ++    +  +++ ++ Y++ K+
Sbjct: 296 LVAAKKLFNEMPSRDVISWTSMIIGYSLAKQ 326


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 141/456 (30%), Positives = 240/456 (52%), Gaps = 52/456 (11%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           I+GY +     L+V  ++ M      P+ +T+P LIKAC  +  ++  G+  H   V+ G
Sbjct: 95  IKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE-GVAFHGSAVRCG 153

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
            G D FV++SL++ Y    ++  AR +FD+  +R+VV+WT M+ GY    D   AR+LF+
Sbjct: 154 VGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFD 213

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-------------------------- 155
           +MPE+NAVSW+AI++ Y +  D +    +F +M                           
Sbjct: 214 EMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMASARFV 273

Query: 156 ---------------------EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
                                E  +KP+E  +VS+++AC+ +G++    WV  Y ++  +
Sbjct: 274 FEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSI 333

Query: 195 E-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
           +     +  A++DM +KCG +  A  +FE +  +D  ++ +M+ G++++G   +++ LF 
Sbjct: 334 DVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFS 393

Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
           RM+  G  P +  F  +LT C+ A +V +G   FE+M   Y + P  +HYAC+VDLL RA
Sbjct: 394 RMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRA 453

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
           G ++EA + ++        G    WGALL AC+++  IE+G  V  +L E+   +   +V
Sbjct: 454 GRLKEAYELLKSMPVEPHAG---AWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYV 510

Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
           L  NIY  A   ++ + +R  + E G++K PGCS I
Sbjct: 511 LLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 143/341 (41%), Gaps = 55/341 (16%)

Query: 2   IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
           IR Y    FP      YL  L   F+  + +   L+KAC     LE     VHA +++ G
Sbjct: 4   IRRYTALTFPD-----YLPTL-RSFDTTS-SISTLLKACTTTSTLEQ----VHARIIRKG 52

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
             +D F++S  L   + +       ++F+       V W T + GY              
Sbjct: 53  LHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYS------------- 99

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
              E  +VS +               +SLF +M+     P++    S++ AC+ +  + +
Sbjct: 100 ---ENYSVSLT---------------VSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKE 141

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G+  H  A R  +  +V + T+++D+Y KCG +  A  VF+ +  ++  +W AMI+G A 
Sbjct: 142 GVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYAS 201

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
             D  ++ +LFD M     +    ++ A+++       +R    +F+ M         + 
Sbjct: 202 FSDLVEARKLFDEM----PEKNAVSWNAIISGYVKCGDLRSARKMFDEMP-----HRNVV 252

Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
            +  ++D  A++G +  A    EE        D   W AL+
Sbjct: 253 SFTTMIDGYAKSGDMASARFVFEEA----PERDVVAWSALI 289



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/213 (20%), Positives = 93/213 (43%), Gaps = 8/213 (3%)

Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
           S + ++L AC     + Q   VH+   R  L ++  L +  + + +   +     SVF G
Sbjct: 26  SSISTLLKACTTTSTLEQ---VHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNG 82

Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
           +S+     WN  I G + N     ++ LF RM +S   P + T+ +++  C+    V++G
Sbjct: 83  VSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEG 142

Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
           +  F   +   GV   +     ++DL  + G +  A K  +E    +G  +   W A+++
Sbjct: 143 VA-FHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDE----MGERNVVSWTAMIA 197

Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
               +  +    +++ ++ E     ++  +  Y
Sbjct: 198 GYASFSDLVEARKLFDEMPEKNAVSWNAIISGY 230


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 135/372 (36%), Positives = 211/372 (56%), Gaps = 6/372 (1%)

Query: 72  LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSW 131
           ++  Y+    +  AR++FD+   +DVV+WT MV  Y K+GD + A+ELF+ MP +N VSW
Sbjct: 249 MISGYATSGDVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSW 308

Query: 132 SAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           +A++  Y+  S + E L  F+ M   G  +P+E+ LVSV++ACA LG++    W+ S+  
Sbjct: 309 NAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSFIG 368

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           + +    V L  A++DM++KCG V  A S+F  +  +    W  MISG A NG  +++L 
Sbjct: 369 KSNTHLTVALGNALIDMFAKCGDVGRAQSIFYKMETRCIITWTTMISGFAFNGLCREALL 428

Query: 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
           +++ M + G +   T F+A L  CTH  ++++G ++F  M   Y ++P++EHY CVVDLL
Sbjct: 429 VYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVDLL 488

Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
            RAG ++EA  FIE            +W  LLS+C  +G  E+   V +K+ E+   + S
Sbjct: 489 GRAGNLQEAILFIESMP---LEPSVVIWVTLLSSCVAHGNAELIEYVSKKITELEPFNSS 545

Query: 371 THVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             VL  N    E  WD      R  +   G++K PG S+I+V   V EFLA D RH +  
Sbjct: 546 YQVLVSNCSALEGRWD-GVIGARTSMRNWGIEKVPGSSLIQVGSEVHEFLAKDTRHERRK 604

Query: 430 EIYRVIHSFLKM 441
           EIY  +   + +
Sbjct: 605 EIYETVDGLMAL 616



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 140/276 (50%), Gaps = 37/276 (13%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY- 76
           Y+ M   G  PN +TF  L++AC +LG     G  VH  +V+ GFG D FV ++L++ Y 
Sbjct: 98  YVAMRAQGVPPNGFTFTFLLRACALLGLPRPCGC-VHGQIVRCGFGSDVFVQNALMDVYY 156

Query: 77  ----SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS 132
                    +G AR +FD+  D+DVV+W ++V  Y   GD   A  LFE MPERN VSW+
Sbjct: 157 RCGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWN 216

Query: 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
            ++A ++R  D     ++F +M      P+ +             A++  L +  YA   
Sbjct: 217 TVVAGFARTGDMVTARTVFDRM------PSRN-------------AVSWNLMISGYATSG 257

Query: 193 HLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
            +E           K+V+  TA+V  Y+K G + +A  +F+ +  K+  +WNAMI+G   
Sbjct: 258 DVEAARSVFDRMDQKDVVSWTAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNH 317

Query: 242 NGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTH 276
           N    ++L  F  M+  G  +P E T V+V++ C  
Sbjct: 318 NSRYDEALRTFQLMMLEGRFRPDEATLVSVVSACAQ 353



 Score = 62.0 bits (149), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/270 (20%), Positives = 120/270 (44%), Gaps = 40/270 (14%)

Query: 19  LDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78
           L ML+  F P+  T   ++ AC  LG +E +  ++ + + K        + ++L++ ++ 
Sbjct: 330 LMMLEGRFRPDEATLVSVVSACAQLGSVE-YCNWISSFIGKSNTHLTVALGNALIDMFAK 388

Query: 79  VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
              +G A+++F K   R ++TWTTM+ G+   G                           
Sbjct: 389 CGDVGRAQSIFYKMETRCIITWTTMISGFAFNG--------------------------- 421

Query: 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV-HSYAKRYHLEKN 197
                 +E L ++  M   G++ + +  ++ L AC H G + +G  + +   ++Y+++  
Sbjct: 422 ----LCREALLVYNNMCREGVELDGTVFIAALAACTHGGLLQEGWSIFNEMVEQYNIQPR 477

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
           +     VVD+  + G++  A+   E +        W  ++S    +G+A    EL + + 
Sbjct: 478 MEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLSSCVAHGNA----ELIEYVS 533

Query: 257 KSGT--QPTETTFVAVLTTCTHAKMVRDGL 284
           K  T  +P  +++  +++ C+  +   DG+
Sbjct: 534 KKITELEPFNSSYQVLVSNCSALEGRWDGV 563


>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
 gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 214/373 (57%), Gaps = 10/373 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC--VILGPLENFGMFV----- 53
           +IRGY +++ P  S+     M   G +P+ +TF  LIKA   V +    N  + V     
Sbjct: 66  LIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEI 125

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H  V+K GF    FV ++L+  Y+       A  +FD++   DVV+W+ +V  + + G+ 
Sbjct: 126 HGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGEL 185

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           E AR +F++MPER+ VSW+ +++AYS+    +E L L+  M + G++P+E  LVSV++AC
Sbjct: 186 ERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISAC 245

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            +LG +  G  VHSY         V L  A++DMY+KCG +  A  VF  +S K    WN
Sbjct: 246 TNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWN 305

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           +MIS  A N + + +  LF RM   G  P   TF+AVLT   H  +V +G  LFE+M   
Sbjct: 306 SMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRD 365

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+E ++EHY CVV++L +AG +EEA + I      L   D  VWG LL+ACR +G + +
Sbjct: 366 HGIEARIEHYGCVVNMLGQAGWLEEAFELITSM--PLPSNDV-VWGVLLAACRKHGDVYM 422

Query: 354 GNRVWRKLAEMGI 366
           G RV +KL E+ +
Sbjct: 423 GERVVKKLLELKL 435



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/311 (20%), Positives = 139/311 (44%), Gaps = 31/311 (9%)

Query: 53  VHAHVVKFGFGEDPFVVSSLLEFYSLVHK--MGTARALFDKSPDRDVVTWTTMVDGYGKM 110
           +HAH +  G  +   +++ +L F ++     +  A+ LFD+ P  +   + T++ GY K 
Sbjct: 14  IHAHSLLAGLHDHSIILAKMLRFAAVSPSGDLAYAQRLFDQLPHPNTFFYNTLIRGYAKS 73

Query: 111 GDFENARELFEKMPER----NAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESG 165
                +  L  +M +     +  +++ ++ A SR+  +    L L  +  E+       G
Sbjct: 74  SIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEI------HG 127

Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYH-----------LEKNVILATAVVDMYSKCGHV 214
            V  L   +HL    +   +H YA R +           +  +V+  + +V  + + G +
Sbjct: 128 AVLKLGFSSHL--FVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGEL 185

Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
             A  VF+ +  +D  +W  M+S  +    ++++LEL+  M+  G +P E T V+V++ C
Sbjct: 186 ERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISAC 245

Query: 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334
           T+   ++ G ++   +    G    +     ++D+ A+ G ++ A +        +    
Sbjct: 246 TNLGDLQMGYSVHSYIDE-NGFRWMVSLCNALIDMYAKCGCMDRAWQVF----NSMSRKS 300

Query: 335 ANVWGALLSAC 345
              W +++SAC
Sbjct: 301 LVTWNSMISAC 311


>gi|357167336|ref|XP_003581113.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Brachypodium distachyon]
          Length = 687

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 160/505 (31%), Positives = 246/505 (48%), Gaps = 71/505 (14%)

Query: 1   MIRGYMQ--ANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
           +I GY +  ++  + ++  ++ ML D G  PN +TF  +++ACV +G L+ FG  VH  +
Sbjct: 166 VISGYARGASDCCRKAIGLFVRMLADHGVMPNEFTFDSVLRACVKMGALD-FGRSVHGCL 224

Query: 58  VKFGFGEDPFVVSSLLEFY-------------------SLV------------HKMGTAR 86
           ++ GF  D  + S+L++ Y                   SL+            H    A+
Sbjct: 225 LRSGFDTDKLITSALVDLYCSSDAVADALLVYNDLEMPSLITSNALIGGLISMHMTDEAK 284

Query: 87  ALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP---------------------- 124
            +F + P+ D  T+  M+  YG  G  E  + +FEKMP                      
Sbjct: 285 IVFSQMPEHDSSTYNLMIKAYGIEGKLEQCQRMFEKMPRRNIVTLNSMMSVLLQNGKLEE 344

Query: 125 ----------ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
                     ERN ++W+++++ Y + +   E L LF  M+ + +  + S   ++L AC 
Sbjct: 345 GLKLFEQIKDERNTITWNSMISGYIQNNHSSEALKLFVTMRRLSIICSPSTFPTLLHACG 404

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            +G I QG  VH++  +   E N  + TA+VDMYSKCG V  AL  F  I++ +  +W +
Sbjct: 405 TVGTIEQGKMVHAHLCKTPFESNGYVGTALVDMYSKCGCVSDALDAFCCITSPNVASWTS 464

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
           +I+G+A NG   K++  F RM++    P E TF+ +L   + A +V  G+  F +M   Y
Sbjct: 465 VINGLAHNGQCLKAIVEFGRMLRHRINPNEITFLGLLMASSRAGLVNKGMRFFHSMER-Y 523

Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           G+ P +EHY C VDLL R G + EAEKFI          D   WGALL+AC     +E+G
Sbjct: 524 GLLPTVEHYTCAVDLLGRNGRIIEAEKFISAMP---VPADGVAWGALLTACWYSMDLEMG 580

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
            +V  KL  MG    S +V   NIY + G   +  KVR  +     KK+PGCS I V   
Sbjct: 581 EKVAEKLFFMGTKHKSAYVAMSNIYAKLGKWEDVVKVRTRLRSLDAKKEPGCSWIGVKDT 640

Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFL 439
           V  FL  D  H +  EIY ++   +
Sbjct: 641 VHVFLVEDRNHPERDEIYLMLEDLV 665



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 138/315 (43%), Gaps = 47/315 (14%)

Query: 18  YLDMLDM-------GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVS 70
           +LD LD+       G  P+  TF  ++ AC   G     G  VH  VVK G      V +
Sbjct: 43  FLDALDLAARMHRSGVSPSEATFASVLGACA-RGRRLCVGAQVHCQVVKSGSENFEVVGA 101

Query: 71  SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAV 129
           SLL+FYS    +  A  LFD    R+   W+ MV    +     +A +L ++MP  R+  
Sbjct: 102 SLLDFYSSCFDLSAAHMLFDTLHPRNERLWSPMVVALVRFNLLSDALDLLDRMPAPRDVF 161

Query: 130 SWSAIMAAYSR-ISDF-KEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186
           +W+A+++ Y+R  SD  ++ + LF R + + G+ PNE    SVL AC  +GA+  G  VH
Sbjct: 162 AWTAVISGYARGASDCCRKAIGLFVRMLADHGVMPNEFTFDSVLRACVKMGALDFGRSVH 221

Query: 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSAL---------------------------- 218
               R   + + ++ +A+VD+Y     V  AL                            
Sbjct: 222 GCLLRSGFDTDKLITSALVDLYCSSDAVADALLVYNDLEMPSLITSNALIGGLISMHMTD 281

Query: 219 ---SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
               VF  +   D+  +N MI    + G  ++   +F++M +        T  ++++   
Sbjct: 282 EAKIVFSQMPEHDSSTYNLMIKAYGIEGKLEQCQRMFEKMPRRNI----VTLNSMMSVLL 337

Query: 276 HAKMVRDGLNLFENM 290
               + +GL LFE +
Sbjct: 338 QNGKLEEGLKLFEQI 352



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 133/326 (40%), Gaps = 69/326 (21%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
           GD   AR LF+ M  R  V+W+A++A ++R   F + L L  +M   G+ P+E+   SVL
Sbjct: 10  GDTAAARRLFDGMRRRTVVTWNAMVAGHARCGSFLDALDLAARMHRSGVSPSEATFASVL 69

Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI------ 224
            ACA    +  G  VH    +   E   ++  +++D YS C  + +A  +F+ +      
Sbjct: 70  GACARGRRLCVGAQVHCQVVKSGSENFEVVGASLLDFYSSCFDLSAAHMLFDTLHPRNER 129

Query: 225 --------------------------SNKDAGAWNAMISGVAMNGD--AKKSLELFDRMV 256
                                     + +D  AW A+ISG A       +K++ LF RM+
Sbjct: 130 LWSPMVVALVRFNLLSDALDLLDRMPAPRDVFAWTAVISGYARGASDCCRKAIGLFVRML 189

Query: 257 KS-GTQPTETTFVAVLTTC-----------THAKMVRDG-----------LNLFENMSAV 293
              G  P E TF +VL  C            H  ++R G           ++L+ +  AV
Sbjct: 190 ADHGVMPNEFTFDSVLRACVKMGALDFGRSVHGCLLRSGFDTDKLITSALVDLYCSSDAV 249

Query: 294 YGV--------EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
                       P L     ++  L    M +EA+    +    +   D++ +  ++ A 
Sbjct: 250 ADALLVYNDLEMPSLITSNALIGGLISMHMTDEAKIVFSQ----MPEHDSSTYNLMIKAY 305

Query: 346 RIYGKIEVGNRVWRKLAEMGITDFST 371
            I GK+E   R++ K+    I   ++
Sbjct: 306 GIEGKLEQCQRMFEKMPRRNIVTLNS 331


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 248/449 (55%), Gaps = 9/449 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y +      +   + +M D    P+      ++ AC   G +  +   ++  +++ 
Sbjct: 186 MIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR-YNRAIYDFLIEN 244

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               D  ++++L+  Y+    M  A   F K   R++   T MV GY K G  ++AR +F
Sbjct: 245 DVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIF 304

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           ++   ++ V W+ +++AY+     +E L +F +M   G+KP+   ++SV++AC +LG + 
Sbjct: 305 DQTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLD 364

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +  WVH Y     LE  + +  A+++MY+KCG + +A  VFE +  ++  +W++MI+  A
Sbjct: 365 KAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFA 424

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G+A  SL LF +M +   +P E TFV VL  C+H+ +V +G  +F +M+  Y + P++
Sbjct: 425 MHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKI 484

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHY C+VDL  RA ++ EA + IE         +  +WG+L+SACR++G++E+G    ++
Sbjct: 485 EHYGCMVDLFGRANLLREALEVIESMP---MAPNVVIWGSLMSACRVHGELELGELAAKR 541

Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           + ++        VL  NIY +E  WD     +R ++ +  + K+ G S I++NG   EFL
Sbjct: 542 ILKLEPDHDGALVLMSNIYAREYRWDY-VRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFL 600

Query: 420 AGDNRHAQAGEIYRVIH---SFLKMSNLV 445
            GD RH Q+ EIY  ++   S LK++  V
Sbjct: 601 IGDKRHKQSNEIYTKLYEVVSKLKLAGYV 629



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 177/354 (50%), Gaps = 14/354 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           ++R   ++  P+ ++  Y  +  +G   +  +FPP++KA   +  L   GM +H    K 
Sbjct: 85  LLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFE-GMELHGFAFKI 143

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               DPFV + L++ Y+   ++  AR +FD+   RDVVTW TM++ Y + G  + A +LF
Sbjct: 144 ATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLF 203

Query: 121 EKMPERNAVS----WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
           E+M + N +        I++A  R  + +   +++  + E  ++ +   L +++T  A  
Sbjct: 204 EEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGA 263

Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
           G +   +    + ++  + +N+ ++TA+V  YSK G +  A  +F+    KD   W  MI
Sbjct: 264 GCMDMAM---EFFRKMSV-RNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMI 319

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           S  A +   +++L +F+ M  SG +P   T ++V++ C +   + D        + + G+
Sbjct: 320 SAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTL-DKAKWVHRYTHLNGL 378

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
           E  L     ++++ A+ G ++ A    E+    +   +   W ++++A  ++G+
Sbjct: 379 ESVLPIDNALINMYAKCGGLDAARDVFEK----MPTRNVVSWSSMINAFAMHGE 428



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 82/160 (51%), Gaps = 1/160 (0%)

Query: 116 ARELFEKM-PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
           A  LF  + P   ++ +++++   SR  + +  +  +++++ VG + +      +L A +
Sbjct: 66  ALNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVS 125

Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
            + A+ +G+ +H +A +     +  + T ++DMY+ CG ++ A +VF+ +S +D   WN 
Sbjct: 126 KVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNT 185

Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
           MI      G   ++ +LF+ M  S   P E     +++ C
Sbjct: 186 MIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSAC 225


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/412 (33%), Positives = 240/412 (58%), Gaps = 6/412 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I GY Q N  K  +  + +M  +    ++ T    I A   L   E  G ++  ++ + 
Sbjct: 144 IICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWE-MGDYLVKYIDEH 202

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D ++ ++L++ Y     +  A  +F +  ++++V+W  M+ GY K+G+   A++LF
Sbjct: 203 GVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLF 262

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
            +MP R+ +SW++++  YS      E + LF++M    +KP+E  + + L+ACAHLG++ 
Sbjct: 263 NEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLD 322

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y +++ ++ +V +  +++DMY KCG V  AL VF  +  +D+ +W ++ISG+A
Sbjct: 323 AGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLA 382

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           +NG A+ +L +FD+M+K G  PT  TFV VL  C H  +V  G+  F++M   Y + P++
Sbjct: 383 VNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEM 442

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           +HY CVVDLL R+G ++ A  FI +KM  +   D  +W  LLSAC+++G + +   V +K
Sbjct: 443 KHYGCVVDLLCRSGYLDMAYNFI-KKMPIV--PDVVIWRILLSACKLHGNLVLAEIVSKK 499

Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEV 411
           L  +  ++   +VLS + Y  +  WD +  K+RKL+  T ++K    S IEV
Sbjct: 500 LLVLDPSNNGNYVLSSSTYAGSDRWD-DVIKIRKLMEVTNLQKPCAYSSIEV 550



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/373 (23%), Positives = 179/373 (47%), Gaps = 20/373 (5%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI G  +++ P  ++  Y  M   G + ++ TF  L K+C  +  +   G  V  H +K 
Sbjct: 43  MIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQ-GQMVRVHSMKL 101

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           GF    FV ++L+  Y    ++  A+ +FD   +RDVV+W +++ GY +   F+   +LF
Sbjct: 102 GFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLF 161

Query: 121 EKMPERNAVSWSAIM----AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
            +M   N  + S  M    +A   +S+++    L + + E G+  +     +++      
Sbjct: 162 REMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRR 221

Query: 177 GAITQGLWVHSYAKR--YHL-EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           G I        +A R  Y + EKN++   A++  Y+K G++ +A  +F  + ++D  +W 
Sbjct: 222 GMI-------DFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWT 274

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           +MI G ++     ++++LF  M+ S  +P E T    L+ C H   +  G  + + +   
Sbjct: 275 SMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRK- 333

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           + ++  +     ++D+  + G+VE+A +   +    +   D+  W +++S   + G  E 
Sbjct: 334 HDIKSDVFVGNSLIDMYCKCGVVEKALQVFND----MKTRDSVSWTSIISGLAVNGFAES 389

Query: 354 GNRVWRKLAEMGI 366
              V+ ++ + GI
Sbjct: 390 ALNVFDQMLKEGI 402



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/267 (18%), Positives = 115/267 (43%), Gaps = 7/267 (2%)

Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
           A  +F ++     + W+ ++   S+     + +  +  M   G++ +    + +  +CA 
Sbjct: 25  AHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 84

Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
           +  + QG  V  ++ +   E    ++ A++ MY   G +  A  VF+G+  +D  +WN++
Sbjct: 85  VSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSI 144

Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
           I G       KK L+LF  M     +    T +  ++          G  L + +   +G
Sbjct: 145 ICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDE-HG 203

Query: 296 VEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
           V   L     ++D+  R GM++ A + F + K   +       W A++      G +   
Sbjct: 204 VVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVS-----WNAMIMGYAKVGNLVAA 258

Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKE 381
            +++ ++    +  +++ ++ Y++ K+
Sbjct: 259 KKLFNEMPSRDVISWTSMIIGYSLAKQ 285


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 227/402 (56%), Gaps = 11/402 (2%)

Query: 36  LIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPD 94
           LI+  + +G +E+      A +V  G  E +P   + +++ Y++  +M  ++ LF+K P 
Sbjct: 344 LIEGLISMGRIED------AELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPC 397

Query: 95  RDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           R + +  TM+  Y + G+ + A ELFE+   E++ V+W+++++ Y      +E L L+  
Sbjct: 398 RTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYIT 457

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M  + ++   S   ++  AC+ LG++ QG  +H++  +   E NV + T+++DMYSKCG 
Sbjct: 458 MHRLSIQQTRSTFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGS 517

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           +  A + F  I + +  AW A+I+G A +G   +++ LFD M++ G  P   TFV VL+ 
Sbjct: 518 IMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSA 577

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C+ A +V +G+ +F +M   Y V P LEHYACVVDLL R+G + EAE+FI +KM      
Sbjct: 578 CSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFI-KKMP--LEA 634

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393
           D  VWGALLSAC  +  +EVG RV  K+        S++V+  NIY   G   E   VRK
Sbjct: 635 DGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRK 694

Query: 394 LISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
           ++    +KK PGCS IE+N  +  F   D  H     IY  +
Sbjct: 695 ILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYATL 736



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 167/368 (45%), Gaps = 15/368 (4%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI  Y +      ++F    M     + +  TF  ++  C  L  L + G  +H  V+K 
Sbjct: 109 MISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRD-GKLIHCLVLKS 167

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G      V S+LL FY+   ++G AR +FD    R+ V W+ M+ GY      ++A  +F
Sbjct: 168 GSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVF 227

Query: 121 EKMPERNAVSWSAIMAAYSRISD-FKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGA 178
            KMP R+ V+W+ +++ +S+  D   + L +FR M   G   PNE     V+ AC  LG 
Sbjct: 228 VKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGI 287

Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
           ++ G  VH    +  LE +  +  A+V+ Y +C  +  AL V +G+ N    A N++I G
Sbjct: 288 LSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEG 347

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           +   G  + +  +F+ M    T+    ++  ++        + D   LFE M        
Sbjct: 348 LISMGRIEDAELVFNGM----TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPC-----R 398

Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
            +     ++ + +R G +++A +  EE        D   W +++S     G+ E   +++
Sbjct: 399 TIFSSNTMISVYSRNGEIDKALELFEETK---NEKDPVTWNSMISGYIHSGQPEEALKLY 455

Query: 359 RKLAEMGI 366
             +  + I
Sbjct: 456 ITMHRLSI 463



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 155/359 (43%), Gaps = 44/359 (12%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
           ++++    +  Y K    + AR+LF++MP+R  VSW+ ++++YS+   F E L L   M 
Sbjct: 71  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMH 130

Query: 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHS--------------------YAKRYHL- 194
              MK +ES   SVL+ CA L  +  G  +H                     YA  + + 
Sbjct: 131 RSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIG 190

Query: 195 ----------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
                      +N +L + ++  Y  C  +  ALSVF  +  +D  AW  +ISG + NGD
Sbjct: 191 EARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGD 250

Query: 245 -AKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302
              K+LE+F  M++SG T P E TF  V+  C    ++  G  +   +    G+E     
Sbjct: 251 GCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTV-HGLLMKCGLEYDPSI 309

Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
              +V+       +++A +  +    G+     N   +L+      G+IE    V+  + 
Sbjct: 310 GGALVEFYCECEAIDDALRVCK----GVVNPCLNALNSLIEGLISMGRIEDAELVFNGMT 365

Query: 363 EMGITDFSTHVLSYNIYKEAGWDMEANK--VRKLISETGMKKKPGCSVIEVNGVVEEFL 419
           EM    ++  +  Y +    G  M+ +K    K+   T        SV   NG +++ L
Sbjct: 366 EMNPVSYNLMIKGYAV----GGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKAL 420



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 34/270 (12%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY+ +  P+ ++  Y+ M  +  +    TF  L  AC  LG L+  G  +HAH++K 
Sbjct: 438 MISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQQ-GQLLHAHLIKT 496

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
            F  + +V +SL++ YS    +  A+  F      +V  WT +++G+   G    A  LF
Sbjct: 497 PFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLF 556

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E+                               G+ PN +  V VL+AC+  G + 
Sbjct: 557 DXMIEQ-------------------------------GLAPNGATFVGVLSACSRAGLVN 585

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISG 238
           +G+ + HS  + Y +   +     VVD+  + GH+  A    + +    D   W A++S 
Sbjct: 586 EGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 645

Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
                D +    + ++M     +P  +  +
Sbjct: 646 CWFWMDLEVGERVAEKMFSFDPKPISSYVI 675


>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
 gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
          Length = 410

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 142/373 (38%), Positives = 214/373 (57%), Gaps = 10/373 (2%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC--VILGPLENFGMFV----- 53
           +IRGY +++ P  S+     M   G +P+ +TF  LIKA   V +    N  + V     
Sbjct: 34  LIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLIKARSRVRVNINRNLPLVVECDEI 93

Query: 54  HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
           H  V+K GF    FV ++L+  Y+       A  +FD++   DVV+W+ +V  + + G+ 
Sbjct: 94  HGAVLKLGFSSHLFVRNALIHLYAARGNPVVAWRVFDETVGVDVVSWSGLVLAHVRAGEL 153

Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
           E AR +F++MPER+ VSW+ +++AYS+    +E L L+  M + G++P+E  LVSV++AC
Sbjct: 154 ERARWVFDQMPERDVVSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISAC 213

Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
            +LG +  G  VHSY         V L  A++DMY+KCG +  A  VF  +S K    WN
Sbjct: 214 TNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAWQVFNSMSRKSLVTWN 273

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           +MIS  A N + + +  LF RM   G  P   TF+AVLT   H  +V +G  LFE+M   
Sbjct: 274 SMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVGLVDEGYRLFESMQRD 333

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+E ++EHY CVV++L +AG +EEA + I      L   D  VWG LL+ACR +G + +
Sbjct: 334 HGIEARIEHYGCVVNMLGQAGWLEEAFELITSM--PLPSNDV-VWGVLLAACRKHGDVYM 390

Query: 354 GNRVWRKLAEMGI 366
           G RV +KL E+ +
Sbjct: 391 GERVVKKLLELKL 403



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 117/276 (42%), Gaps = 48/276 (17%)

Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE------- 163
           GD   A+ LF+++P  N   ++ ++  Y++ S     L L  QM++ G+ P+E       
Sbjct: 11  GDLAYAQRLFDQLPHPNTFFYNTLIRGYAKSSIPSYSLHLVNQMRQNGVDPDEFTFNFLI 70

Query: 164 -----------------------SGLVSVLTACAHLGAITQGLWVHSYAKRYH------- 193
                                   G V  L   +HL    +   +H YA R +       
Sbjct: 71  KARSRVRVNINRNLPLVVECDEIHGAVLKLGFSSHL--FVRNALIHLYAARGNPVVAWRV 128

Query: 194 ----LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
               +  +V+  + +V  + + G +  A  VF+ +  +D  +W  M+S  +    ++++L
Sbjct: 129 FDETVGVDVVSWSGLVLAHVRAGELERARWVFDQMPERDVVSWTTMVSAYSQAKYSREAL 188

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           EL+  M+  G +P E T V+V++ CT+   ++ G ++   +    G    +     ++D+
Sbjct: 189 ELYVTMLDKGVRPDEVTLVSVISACTNLGDLQMGYSVHSYIDE-NGFRWMVSLCNALIDM 247

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345
            A+ G ++ A +        +       W +++SAC
Sbjct: 248 YAKCGCMDRAWQVFNS----MSRKSLVTWNSMISAC 279


>gi|147777522|emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
          Length = 513

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 144/384 (37%), Positives = 219/384 (57%), Gaps = 10/384 (2%)

Query: 29  NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
           + + FP  +K+C       N G  +HAHV KF    +PFV  +L++ Y     + +AR L
Sbjct: 46  DAFVFPLALKSCAA-AHRPNLGAAIHAHVTKFSLVSNPFVACALVDMYGKCVSVSSARHL 104

Query: 89  FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-ERNAVSWSAIMAAYSRISD--FK 145
           FD+ P R++V W  M+  Y   G   +A  LFE M  E NA +++AI++  S + D  FK
Sbjct: 105 FDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAIISGLSGLEDGSFK 164

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
             LS +R+M EVG+K N   L+++L AC  L A+T    +H YA R  ++ +  L + +V
Sbjct: 165 -ALSFYRRMGEVGLKQNLITLLALLPACVDLAALTLIKEIHGYAIRNGIDPHPHLRSCLV 223

Query: 206 DMYSKCGHVHSALSVFEGIS--NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           + Y +CG + ++  VF+ IS   +D  AW+++IS  A++GDA+ +LE F++M  +  QP 
Sbjct: 224 EAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTALETFEQMEMAKVQPD 283

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
             TF+ VL  C+HA +  + L  F  M   YGVE   +HY+CVVD L+RAG + EA + I
Sbjct: 284 GITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDALSRAGRLYEAYEII 343

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           +   G      A  WGALL ACR YG++E+     R L E+   + + +VL   IY   G
Sbjct: 344 Q---GMPVKATAKTWGALLGACRTYGEVELAEIAGRALFELEPDNAANYVLLARIYASVG 400

Query: 384 WDMEANKVRKLISETGMKKKPGCS 407
              EA ++R+ ++E G+K  PG S
Sbjct: 401 RHEEAQRMRREMNEMGVKAAPGSS 424


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 133/370 (35%), Positives = 216/370 (58%), Gaps = 10/370 (2%)

Query: 82  MGTARA-------LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
           +GTARA        F +  + +++    ++D Y K    + AR +F+ +  R+ VSW+ +
Sbjct: 229 LGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVM 288

Query: 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           ++   +     E L +F  MQ  G+KP++  L +VL+ACA LGA+  G WVH Y +R  +
Sbjct: 289 ISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGI 348

Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
           E +V + T+VVDMY KCG + +A+S+F+ +  K+  +WNA+I+G A++G  +++L+ FDR
Sbjct: 349 EWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDR 408

Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
           MV SG  P E TF+ VL  C H+ +V++G  LFE M+  Y + P  +HY C+VDLL RAG
Sbjct: 409 MVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAG 468

Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374
           +++EA   I+      G      W  LLSAC+ +G+++   ++   + E+  +    +VL
Sbjct: 469 LIQEAYDVIKAMPMRPG---VFTWVTLLSACQAHGRMDFSQQILMHIHELESSGNGIYVL 525

Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRV 434
             N+Y  +    +  K R  ++E GM+K+PG SVIEVNG   EFL G   H    ++  +
Sbjct: 526 LSNMYAVSDRWADVGKARGFMNEKGMQKEPGSSVIEVNGKTCEFLVGQQNHLYMDDVRAM 585

Query: 435 IHSFLKMSNL 444
           +   +K  +L
Sbjct: 586 LSILMKQIHL 595



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 150/326 (46%), Gaps = 39/326 (11%)

Query: 25  GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84
           G  P+ YT P  +KAC  LG     G   HA   K GF     V ++L+ FY    + G 
Sbjct: 112 GARPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGD 171

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR +FD+  +RDVV+WT                               A+++A++R   F
Sbjct: 172 ARKVFDEMAERDVVSWT-------------------------------ALLSAFTRGGMF 200

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
            E L +  +M    + PNE  L SVL AC +LG    G  VH +  R   E N+I+  A+
Sbjct: 201 MEALGVLAEMD---VTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNAL 257

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           +DMY KC  +  A  VF+ +  +D  +W  MISG+       ++LE+F+ M  SG +P +
Sbjct: 258 LDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDK 317

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
                VL+ C     +  G  + E +    G+E  +     VVD+  + G ++ A    +
Sbjct: 318 VVLSTVLSACASLGALESGRWVHEYIER-KGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQ 376

Query: 325 EKMGGLGGGDANVWGALLSACRIYGK 350
           E    +   + + W AL++   ++G+
Sbjct: 377 E----MPLKNVSSWNALINGFALHGR 398


>gi|77553572|gb|ABA96368.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 605

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 139/414 (33%), Positives = 228/414 (55%), Gaps = 34/414 (8%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF----GFGEDPFVVSSLLEFYSLVHK 81
             PN +T+PPL +A           + +  H VKF        D  + ++LL  ++   +
Sbjct: 119 LRPNAFTYPPLFRA-----APPALALALATHSVKFLGAHAASCDRVLGAALLGVFARCGR 173

Query: 82  MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
           + + R +FD+    D+  W  ++  Y ++     AR++        A + SA  A     
Sbjct: 174 IASCRRVFDRIAHPDLPAWNALLSAYARL----RARDV--------ACATSAADA----- 216

Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
                +L LF +M  + ++PNE  LV+V+ AC  LGA++ G+W H+YA +  L  N I+A
Sbjct: 217 -----ILELFVRMLSLAIEPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVA 271

Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261
           TA+V+MY+ CG +  A  VF   S++D   +NAM+ G+A++G  + +L L DRM  +G  
Sbjct: 272 TALVEMYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLLDRMHGAGVP 331

Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
               T ++V+  C HA +V +GL+ F+ M   +G+EP++EHY C++D+L+RAG +  AEK
Sbjct: 332 VDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPRIEHYGCMIDMLSRAGRLNNAEK 391

Query: 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381
            I E    L   +A ++ +L+ AC I+GK+E+G ++  +L  +   D   HVL  N Y  
Sbjct: 392 LIHEM---LIVPNAAIYRSLIRACGIHGKLELGEKMIAELMRLEPDDSGNHVLISNFYAR 448

Query: 382 AGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
                +A K RK +   G+ K PG S++++NGV+ EFL GD  H  + EIY ++
Sbjct: 449 TNRWEDAKKARKEMKSMGIDKNPGSSLVDINGVLHEFLVGDKTHPASKEIYTMV 502



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 105/241 (43%), Gaps = 38/241 (15%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ ML +  EPN  T   +I AC  LG + + G++ H + VK     +  V ++L+E Y+
Sbjct: 221 FVRMLSLAIEPNEITLVAVIGACGELGAVSH-GVWAHTYAVKRRLAVNCIVATALVEMYA 279

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++  A  +F  + DRD   +  M+ G    G    A                     
Sbjct: 280 GCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAA--------------------- 318

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEK 196
                     LSL  +M   G+  +   ++SV+ ACAH G + +GL +       + +E 
Sbjct: 319 ----------LSLLDRMHGAGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEP 368

Query: 197 NVILATAVVDMYSKCGHVHSALS-VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            +     ++DM S+ G +++A   + E +   +A  + ++I    ++G     LEL ++M
Sbjct: 369 RIEHYGCMIDMLSRAGRLNNAEKLIHEMLIVPNAAIYRSLIRACGIHG----KLELGEKM 424

Query: 256 V 256
           +
Sbjct: 425 I 425


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/417 (36%), Positives = 235/417 (56%), Gaps = 10/417 (2%)

Query: 27  EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
            P+++TFP ++ +   L    +    +HA ++K GF      +++LL  Y    +   A 
Sbjct: 98  RPDHFTFPQILPSAQPL----HLVAQLHALLLKLGFHAHTQSLNALLAAYLANARPDLAS 153

Query: 87  ALFDKSPDR-DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
            +F       DVV+WTTMV G  K+G F++AR LF+ MPERN VSW+A+M+ Y +   F 
Sbjct: 154 RVFRGGGGALDVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFL 213

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
           + L +F +M+  G+  N     + + AC   GA+ +G  VH + ++  ++ +  LATAVV
Sbjct: 214 DALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVV 273

Query: 206 DMYSKCGHVHSALSVFEG--ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
           DMY KCG V  A  VFE   ++ K    WN MI G A++G  + +L+LF RM + G  P 
Sbjct: 274 DMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPD 333

Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
           + T V VLT C HA M+ +G + F  +   YG+EP++EHY C+VDL  RAG +EEA+K I
Sbjct: 334 DVTLVNVLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVI 393

Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
           ++        D  V GAL  A +I+G +++G  +  ++ E+   +   +VL  N+   AG
Sbjct: 394 QDMP---MEPDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAG 450

Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
              +  +VR+L+ E  + K+ G SVIEV G V EF  G   H +A E+Y +    ++
Sbjct: 451 RWEDVARVRRLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMR 507


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 128/350 (36%), Positives = 209/350 (59%), Gaps = 14/350 (4%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI---------SDFKE 146
           D V    ++D + + G   + R++F+++   +  +W+A+++AY+R+         S    
Sbjct: 390 DRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADA 449

Query: 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206
           +L +F +M  + +KPNE  LV+V+ AC  LGA++ G+W H+YA +  L  N I+ATA+V+
Sbjct: 450 ILEMFVRMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVE 509

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           MY+ CG +  A  VF   S++D   +NAM+ G+A++G  + +L LFDRM   G      T
Sbjct: 510 MYAGCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVT 569

Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326
            ++V+  C HA +V +GL+ F+ M   +G+EP +EHY C+VD+L+RAG + +AEK I   
Sbjct: 570 VLSVMCACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIH-- 627

Query: 327 MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WD 385
            G     +A ++ +L+ AC I+GK+E+G ++  +L  +   D   HVL  N Y     WD
Sbjct: 628 -GMPIVPNAAIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWD 686

Query: 386 MEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
            +A K RK +   G+ K PG S +++NGV+ EFL GD  H  + EIY ++
Sbjct: 687 -DAKKARKEMKSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMV 735



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 113/275 (41%), Gaps = 47/275 (17%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           ++ ML +  +PN  T   +I AC  LG + + G++ H + VK     +  V ++L+E Y+
Sbjct: 454 FVRMLSLAIKPNEITLVAVIGACGELGAVSH-GVWAHTYAVKRRLAVNCIVATALVEMYA 512

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
              ++  A  +F  + DRD   +  M+ G    G    A                     
Sbjct: 513 GCGRLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAA--------------------- 551

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEK 196
                     LSLF +M   G+  +   ++SV+ ACAH G + +GL +       + +E 
Sbjct: 552 ----------LSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLDYFDRMEIEFGIEP 601

Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           ++     +VDM S+ G ++ A  +  G+    +A  + ++I    ++G     LEL  +M
Sbjct: 602 SIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNAAIYRSLIRACGIHG----KLELGKKM 657

Query: 256 V---------KSGTQPTETTFVAVLTTCTHAKMVR 281
           +          SG     + F A       AK  R
Sbjct: 658 IAELMRLEPDDSGNHVLISNFYATTNRWDDAKKAR 692


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 135/363 (37%), Positives = 210/363 (57%), Gaps = 3/363 (0%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           ++++  Y     M  A+ LFD  P R+V +W TM+ GY + G  + AR +F  MP+++AV
Sbjct: 359 NAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAV 418

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189
           SW+A++AAYS+I   +E L LF++M   G   N S    VL+ CA + A+  G+ +HS  
Sbjct: 419 SWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRL 478

Query: 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249
            +        +  A++ MY KCG +  A S FE +  +D  +WN MI+G A +G  K++L
Sbjct: 479 IKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEAL 538

Query: 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
           E+FD M K+ T+P + T V VL  C+H+ +V  G++ F +M   +GV  + EHY C++DL
Sbjct: 539 EVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDL 598

Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
           L RAG ++EA   +++        D+ +WGALL A RI+   E+G     K+ E+   + 
Sbjct: 599 LGRAGRLDEAVNLMKDM---PFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENA 655

Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
             +VL  NIY  +G   + +K+R ++ E G+KK PG S IEV   V  F  GD+ H +  
Sbjct: 656 GMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPERE 715

Query: 430 EIY 432
           +IY
Sbjct: 716 DIY 718



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 43/278 (15%)

Query: 65  DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP 124
           D    ++L+  Y    ++  A+ +F+K P RDVV+W TMV GY + GD   AR LF+  P
Sbjct: 261 DAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAP 320

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
            R+  +W+AI++ Y++    +E   +F  M      P+++             A++    
Sbjct: 321 IRDVFTWTAIVSGYAQNGMLEEAKRVFDAM------PDKN-------------AVSWNAM 361

Query: 185 VHSYAKRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
           + +Y +R  +E           +NV     ++  Y++ G +  A ++F  +  KDA +W 
Sbjct: 362 MAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWA 421

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM-SA 292
           AM++  +  G ++++L+LF  M + G     + F  VL+TC     +  G+ L   +  A
Sbjct: 422 AMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKA 481

Query: 293 VYGVEPQLEHYACVVD--LLA---RAGMVEEAEKFIEE 325
            YGV        C V   LLA   + G +EEA    EE
Sbjct: 482 GYGV-------GCFVGNALLAMYFKCGSMEEAHSAFEE 512



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 140/284 (49%), Gaps = 23/284 (8%)

Query: 85  ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF 144
           AR  FD +P++D V+W  M+  Y + G  + ARELF+   E +A+SW+A+MA Y + S  
Sbjct: 219 ARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQI 278

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           +E   +F +M +  +        ++++  A  G + +   +   A      ++V   TA+
Sbjct: 279 EEAQKMFNKMPQRDV----VSWNTMVSGYARRGDMAEARRLFDVAP----IRDVFTWTAI 330

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           V  Y++ G +  A  VF+ + +K+A +WNAM++        +++ ELFD M         
Sbjct: 331 VSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV---- 386

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE--HYACVVDLLARAGMVEEAEKF 322
            ++  +LT    A M+       +   A++G+ PQ +   +A ++   ++ G  EE  + 
Sbjct: 387 ASWNTMLTGYAQAGML-------DEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQL 439

Query: 323 IEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            +E MG  G   + + +  +LS C     +E G ++  +L + G
Sbjct: 440 FKE-MGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAG 482



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 36/239 (15%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           M+  Y Q  F + ++  + +M   G   N   F  ++  C  +  LE  GM +H+ ++K 
Sbjct: 423 MLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALE-CGMQLHSRLIKA 481

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G+G   FV ++LL  Y     M  A + F++  +RDVV+W TM+ GY + G         
Sbjct: 482 GYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHG--------- 532

Query: 121 EKMPERNAVSWSAIMAAYSRISDF-KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
                                  F KE L +F  M++   KP++  LV VL AC+H G +
Sbjct: 533 -----------------------FGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLV 569

Query: 180 TQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-NKDAGAWNAMI 236
            +G+ + +S  + + +       T ++D+  + G +  A+++ + +    D+  W A++
Sbjct: 570 EKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALL 628



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 132/329 (40%), Gaps = 59/329 (17%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP----- 124
           +++L  Y+   ++  A + F   P  D  ++ T++   G      + R LF++MP     
Sbjct: 142 NTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSV 201

Query: 125 --------------------------ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG 158
                                     E++AVSW+ ++AAY R    +E   LF    E  
Sbjct: 202 SYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTE-- 259

Query: 159 MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHS 216
                      ++  A +    Q   +    K ++   +++V+    +V  Y++ G +  
Sbjct: 260 --------WDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAE 311

Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
           A  +F+    +D   W A++SG A NG  +++  +FD M          ++ A++     
Sbjct: 312 ARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA----VSWNAMMAAYVQ 367

Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
            +M+ +   LF+ M         +  +  ++   A+AGM++EA        G +   DA 
Sbjct: 368 RRMMEEAKELFDAMPCR-----NVASWNTMLTGYAQAGMLDEARAIF----GMMPQKDAV 418

Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAEMG 365
            W A+L+A   Y +I       +   EMG
Sbjct: 419 SWAAMLAA---YSQIGFSEETLQLFKEMG 444



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 29/327 (8%)

Query: 56  HVVKFGFGEDPFVVSSLLEF----YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
           H  +  FG+ P + S  L       S       A A     PD +V+     +  + + G
Sbjct: 62  HKPEPQFGKPPMLPSRHLRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAG 121

Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171
              +A  LF  MP R+  +++ ++A Y+      + LS FR +     +P+     ++L 
Sbjct: 122 RVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----RPDSFSYNTLLH 177

Query: 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA 231
           A   LG  +    V +      + K+ +    ++  ++  G V  A   F+    KDA +
Sbjct: 178 A---LGVSSSLADVRALFDEMPV-KDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVS 233

Query: 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291
           WN M++    NG  +++ ELFD    S T+    ++ A++        + +   +F  M 
Sbjct: 234 WNGMLAAYVRNGRIQEARELFD----SRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM- 288

Query: 292 AVYGVEPQLE--HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
                 PQ +   +  +V   AR G + EA +  +         D   W A++S     G
Sbjct: 289 ------PQRDVVSWNTMVSGYARRGDMAEARRLFDVA----PIRDVFTWTAIVSGYAQNG 338

Query: 350 KIEVGNRVWRKLAEMGITDFSTHVLSY 376
            +E   RV+  + +     ++  + +Y
Sbjct: 339 MLEEAKRVFDAMPDKNAVSWNAMMAAY 365


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 231/431 (53%), Gaps = 36/431 (8%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++      ++  + +M   G  P+ Y    ++ AC I G L++ G  VH ++ + 
Sbjct: 425 MITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKS-GKIVHDYIREN 483

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
               + FV ++L                                D Y K G  ++A ++F
Sbjct: 484 NLETNSFVSNAL-------------------------------TDMYAKCGSMKDAHDVF 512

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
             M +++ +SW+ ++  Y++ S   E L+LF +MQ    KP+ + +  +L ACA L A+ 
Sbjct: 513 SHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALD 571

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
           +G  +H YA R    ++  +  AVVDMY KCG +  A S+F+ I NKD  +W  MI+G  
Sbjct: 572 KGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYG 631

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
           M+G   +++  F++M  +G +P E +F+++L  C+H+ ++ +G  +F  M     +EP L
Sbjct: 632 MHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNL 691

Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
           EHYAC+VDLLAR G + +A KFI+         DA +WGALL  CRI+  +++  +V  +
Sbjct: 692 EHYACMVDLLARTGNLVKAHKFIK---AMPIKPDATIWGALLCGCRIHHDVKLAEKVAER 748

Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
           + E+   +   +VL  NIY EA    E  K+RK I + G+KK PGCS IE+ G +  F+A
Sbjct: 749 IFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVA 808

Query: 421 GDNRHAQAGEI 431
           GD    QA +I
Sbjct: 809 GDCSKPQAKKI 819



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 164/356 (46%), Gaps = 49/356 (13%)

Query: 14  SVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLL 73
           S+  +  ML++G +PN+YTF  ++K    +  +E  G  VH  + K GF     VV+SL+
Sbjct: 235 SINLFKQMLELGIKPNSYTFSSILKCFAAVARVEE-GRQVHGLICKLGFNSYNTVVNSLI 293

Query: 74  EFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSA 133
            FY +  K+  A+ LFD+  DRDV++W +M+ GY K G  +   E+F K           
Sbjct: 294 SFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIK----------- 342

Query: 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRY 192
                               M   G+  + + +V+V  ACA++G +  G  +HSY+ K  
Sbjct: 343 --------------------MLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAA 382

Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
            L++ V     ++DMYSKCG ++SA+ VFE +  K   +W +MI+G    G +  +++LF
Sbjct: 383 TLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLF 442

Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VD 308
           D M   G  P      ++L  C     ++ G  + +     Y  E  LE  + V     D
Sbjct: 443 DEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHD-----YIRENNLETNSFVSNALTD 497

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
           + A+ G +++A          +   D   W  ++     Y K  + N      AEM
Sbjct: 498 MYAKCGSMKDAHDVFSH----MKKKDVISWNTMIGG---YTKNSLPNEALTLFAEM 546



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 127/274 (46%), Gaps = 32/274 (11%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY++       +  ++ ML  G + +  T   +  AC  +G L   G  +H++ +K 
Sbjct: 323 MISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL-LGKVLHSYSIKA 381

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                          + DR+V    T++D Y K GD  +A  +F
Sbjct: 382 A------------------------------TLDREVRFNNTLLDMYSKCGDLNSAIRVF 411

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           E+M E+  VSW++++  Y R       + LF +M+  G+ P+   + S+L ACA  G + 
Sbjct: 412 ERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLK 471

Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
            G  VH Y +  +LE N  ++ A+ DMY+KCG +  A  VF  +  KD  +WN MI G  
Sbjct: 472 SGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYT 531

Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
            N    ++L LF  M +  ++P  TT   +L  C
Sbjct: 532 KNSLPNEALTLFAEMQRE-SKPDGTTVACILPAC 564



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 120/261 (45%), Gaps = 10/261 (3%)

Query: 75  FYSLVHKMGTARALFDKSPDRDVVTWT-TMVDG---------YGKMGDFENARELFEKMP 124
           + S++      +++ D    R ++  +  M+DG         Y K GD +  R +F+K+ 
Sbjct: 153 YCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLS 212

Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
           E     W+ +++ YS   ++ E ++LF+QM E+G+KPN     S+L   A +  + +G  
Sbjct: 213 ESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQ 272

Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
           VH    +        +  +++  Y     V  A  +F+ ++++D  +WN+MISG   NG 
Sbjct: 273 VHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGL 332

Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
             + +E+F +M+  G      T V V   C +   +  G  L         ++ ++    
Sbjct: 333 DDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNN 392

Query: 305 CVVDLLARAGMVEEAEKFIEE 325
            ++D+ ++ G +  A +  E 
Sbjct: 393 TLLDMYSKCGDLNSAIRVFER 413



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 14/241 (5%)

Query: 140 RISDFKEVLSLFRQMQEVGMKPNES----GLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
           +I +F EV  L   M+ +    N +       S+L  CA   +I  G  V S  +   + 
Sbjct: 123 KIVEFCEVGDLKNAMELLCSSQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVM 182

Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
            + IL   +V MY KCG +     VF+ +S      WN MIS  + +G+  +S+ LF +M
Sbjct: 183 IDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQM 242

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL--EHYACVVDLLARA 313
           ++ G +P   TF ++L        V +G         V+G+  +L    Y  VV+ L   
Sbjct: 243 LELGIKPNSYTFSSILKCFAAVARVEEG-------RQVHGLICKLGFNSYNTVVNSLISF 295

Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTH 372
             V    +  ++    L   D   W +++S     G  + G  ++ K+   G+  D +T 
Sbjct: 296 YFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATM 355

Query: 373 V 373
           V
Sbjct: 356 V 356


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/326 (36%), Positives = 200/326 (61%), Gaps = 3/326 (0%)

Query: 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166
           Y K+ + + AR LF++ PE+  V+W+A+++ Y++    +  +SLF++M +    PN   +
Sbjct: 355 YNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTI 414

Query: 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226
            ++L+ACA LG+++ G WVH   K  +LE N+ ++TA+VDMY+KCG++  A  +F+ +S 
Sbjct: 415 TTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSE 474

Query: 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
           K+   WN MI G  ++G   ++L+L++ M+  G  P+  TF++VL  C+HA +V +G  +
Sbjct: 475 KNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEI 534

Query: 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346
           F NM   Y +EP +EHYAC+VD+L R+G +E+A +FI++     G     VWG LL AC 
Sbjct: 535 FHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPA---VWGTLLGACM 591

Query: 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGC 406
           I+   ++      +L E+       +VL  NIY       +A  +R+++ +  + K PGC
Sbjct: 592 IHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGC 651

Query: 407 SVIEVNGVVEEFLAGDNRHAQAGEIY 432
           ++IEVNG    F++GD  H+ A +IY
Sbjct: 652 TLIEVNGTPHVFVSGDRSHSHATDIY 677



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 162/388 (41%), Gaps = 66/388 (17%)

Query: 1   MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
           ++RG+   + P  S+  Y  +  +    P+N+T+   + AC      +   M +HAH + 
Sbjct: 81  LVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC----SNDKHLMLLHAHSII 136

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G+G + FV S+L                               VD Y K      AR++
Sbjct: 137 DGYGSNVFVGSAL-------------------------------VDLYCKFSRVVYARKV 165

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F+ MPER+ V W+ ++    +   F + + LFR+M   G++ + S + +VL A A L  +
Sbjct: 166 FDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQEL 225

Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
             G+ +   A +        + T ++ +YSKCG V++A  +F  I+  D  A+NAMISG 
Sbjct: 226 KVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGF 285

Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAV-----------LTTCTHAKMVRDGLNLFE 288
             NG  + S++LF  ++ SG + + +T V +           L    H   V+ G+ L  
Sbjct: 286 TANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNP 345

Query: 289 NMSAVYGV-------------------EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
            +S  +                     E  +  +  ++    + G  E A    +E M  
Sbjct: 346 TVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKT 405

Query: 330 LGGGDANVWGALLSACRIYGKIEVGNRV 357
               +A     +LSAC   G +  G  V
Sbjct: 406 EFTPNAVTITTILSACAQLGSLSFGKWV 433



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 34/247 (13%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI GY Q    + ++  + +M+   F PN  T   ++ AC  LG L +FG +VH H++K 
Sbjct: 382 MISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSL-SFGKWVH-HLIK- 438

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
                                         ++ + ++   T +VD Y K G+   A +LF
Sbjct: 439 -----------------------------SENLEPNIYVSTALVDMYAKCGNISEAWQLF 469

Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
           + M E+N V+W+ ++  Y       E L L+ +M  +G  P+    +SVL AC+H G + 
Sbjct: 470 DSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVG 529

Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA-WNAMISG 238
           +G  + H+   +Y +E  +     +VD+  + G +  AL   + +  +   A W  ++  
Sbjct: 530 EGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGA 589

Query: 239 VAMNGDA 245
             ++ D 
Sbjct: 590 CMIHKDT 596


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 247/434 (56%), Gaps = 8/434 (1%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVK 59
           MI G+ ++     +V  + +M   G +P+  +   ++ A   L  PL   G+ +H +V+K
Sbjct: 181 MISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPL--MGIQIHCYVIK 238

Query: 60  FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
            G G D FVVS+L++ Y           +F++  + DV     +V G  + G  +NA E+
Sbjct: 239 QGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEV 298

Query: 120 FEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
           F++    + N VSW++++A+ S+     E L LFR+MQ  G+KPN   +  +L AC ++ 
Sbjct: 299 FKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIA 358

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+  G   H ++ R  +  +V + +A++DMY+KCG + ++   F+ + N++  +WN++++
Sbjct: 359 ALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMA 418

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
           G AM+G   +++ +F+ M + G +P   +F  VL+ CT   +  +G   F++MS  +GVE
Sbjct: 419 GYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVE 478

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
            ++EHY+C+V LL R+G +EEA   I++        D+ VWGALLS+CR++ ++++G   
Sbjct: 479 ARMEHYSCMVTLLGRSGRLEEAYAMIKQMP---FEPDSCVWGALLSSCRVHNRVDLGEIA 535

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
            +++ E+   +   ++L  NIY      +E + VR ++   G+KK PG S IE+   V  
Sbjct: 536 AKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHM 595

Query: 418 FLAGDNRHAQAGEI 431
            LAGD+ H Q  +I
Sbjct: 596 LLAGDSSHPQMPQI 609



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 148/299 (49%), Gaps = 10/299 (3%)

Query: 13  LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSL 72
           + VF Y  ML  G  P++   P +IK C  L  L+  G  +H   +  G G D  V+SSL
Sbjct: 59  IRVFSY--MLTQGIVPDSRVLPTVIKTCAALSALQT-GKQMHCFALVSGLGLDSVVLSSL 115

Query: 73  LEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP----ERNA 128
           L  Y     +  AR +FDK P   VVT + ++  + + G  +  +ELF +      E N 
Sbjct: 116 LHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNL 175

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           VSW+ +++ ++R   + + + +F+ M   G+KP+ + + SVL A   L     G+ +H Y
Sbjct: 176 VSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCY 235

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
             +  L  +  + +A++DMY KC        VF  +   D GA NA+++G++ NG    +
Sbjct: 236 VIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNA 295

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
           LE+F +    G      ++ +++ +C+      + L LF  M  + GV+P      C++
Sbjct: 296 LEVFKQF--KGMDLNVVSWTSMIASCSQNGKDMEALELFREMQ-IEGVKPNSVTIPCLL 351



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 86/173 (49%), Gaps = 1/173 (0%)

Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
           +  +S    +  +S+++ F  V+ +F  M   G+ P+   L +V+  CA L A+  G  +
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245
           H +A    L  + ++ ++++ MY +  H+  A +VF+ +        +A+IS  A  G  
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
           K++ ELF +    G +    ++  +++    +    D + +F+NM  + G++P
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMH-LEGLKP 208


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/454 (33%), Positives = 248/454 (54%), Gaps = 16/454 (3%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           +I  Y Q      ++  ++ M+  GF P+  T   ++ AC  L      G  VH  +VK 
Sbjct: 219 LITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGRE-GRQVHTRMVKS 277

Query: 61  G-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
             F ED  + ++L++ Y+   +   A+ +FD+   R VV+ T+M+ GY K  +  +A+ +
Sbjct: 278 DRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAV 337

Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
           F +M E+N V+W+ ++A Y+  S+ +E L LF +++   + P      +VL ACA+L  +
Sbjct: 338 FLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANL 397

Query: 180 TQGLWVHSYAKRYHL------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
             G   H +  +         E +V +  ++VDMY K G +     VFE ++ +D  +WN
Sbjct: 398 QLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWN 457

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
           AMI G A NG AK +L LF+RM+ S  +P   T + VL+ C H+ +V++G   F++M+  
Sbjct: 458 AMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTED 517

Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
           +G+ P  +HY C++DLL RAG ++E E+ IE         DA +W +LL ACR++  I++
Sbjct: 518 HGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMP---MEPDAVLWASLLGACRLHKNIDM 574

Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
           G     KL E+   +   +VL  N+Y E G   +  +VR+ +   G+ K+PGCS IE+  
Sbjct: 575 GEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGR 634

Query: 414 VVEEFLAGDNRHAQAGEIY---RVIHSFLKMSNL 444
            V  FLA DN H    EI+   R+I   ++MS +
Sbjct: 635 KVNVFLARDNIHPCRNEIHDTLRIIQ--MQMSRM 666



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 126/259 (48%)

Query: 62  FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
           F  + F++++LL  Y+ +  +  AR +FD  P R+  ++  ++    ++G  ++A  LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 122 KMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181
            +P+ +  S++A++AA ++     + L     M       N     S L+ACA   A   
Sbjct: 106 AIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRT 165

Query: 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAM 241
           G  VH+   +     +V + TA+VDMY+KC     A  VF+ +  ++  +WN++I+    
Sbjct: 166 GEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301
           NG   ++L LF RM+K G  P E T  +V++ C      R+G  +   M         + 
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285

Query: 302 HYACVVDLLARAGMVEEAE 320
               +VD+ A+ G   EA+
Sbjct: 286 LNNALVDMYAKCGRTWEAK 304



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 147/354 (41%), Gaps = 73/354 (20%)

Query: 26  FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
           F  N Y+F   + AC         G  VHA V K   G D ++ ++L++ Y+   +   A
Sbjct: 143 FVLNAYSFASALSACAS-EKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEA 201

Query: 86  RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
           + +FD  P+R++V+W +++  Y + G  +                               
Sbjct: 202 QKVFDAMPERNIVSWNSLITCYEQNGPVD------------------------------- 230

Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS-YAKRYHLEKNVILATAV 204
           E L+LF +M + G  P+E  L SV++ACA L A  +G  VH+   K     ++++L  A+
Sbjct: 231 EALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNAL 290

Query: 205 VDMYSKCGHVHSALSVFEGIS-------------------------------NKDAGAWN 233
           VDMY+KCG    A  VF+ ++                                K+  AWN
Sbjct: 291 VDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWN 350

Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN-----LFE 288
            +I+  A N + +++L LF R+ +    PT  T+  VL  C +   ++ G       L E
Sbjct: 351 VLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKE 410

Query: 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
                 G E  +     +VD+  + G + +  K  E     +   D   W A++
Sbjct: 411 GFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFER----MAARDNVSWNAMI 460


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/351 (37%), Positives = 210/351 (59%), Gaps = 4/351 (1%)

Query: 70  SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
           +S+++ Y    ++  A+ LFD  P RDVVTW TM+DGY K+G    A+ LF++MP R+ V
Sbjct: 222 NSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVV 281

Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           +++++MA Y +     E L +F  M+ E  + P+E+ LV VL+A A LG +++ + +H Y
Sbjct: 282 AYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLY 341

Query: 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248
                      L  A++DMYSKCG +  A+ VFEGI NK    WNAMI G+A++G  + +
Sbjct: 342 IVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 401

Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308
            ++  ++ +   +P + TFV VL  C+H+ +V++GL  FE M   + +EP+L+HY C+VD
Sbjct: 402 FDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 461

Query: 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368
           +L+R+G +E A+  IEE    +   D  +W   L+AC  + + E G  V + L      +
Sbjct: 462 ILSRSGSIELAKNLIEEM--PIEPNDV-IWRTFLTACSHHKEFETGELVAKHLILQADYN 518

Query: 369 FSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
            S++VL  N+Y   G   +  +VR ++ E  ++K PGCS IE++G V EF 
Sbjct: 519 PSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGXVHEFF 569



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 181/357 (50%), Gaps = 26/357 (7%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MI+ +     P+ ++  +  ML++G   + ++   ++KAC  LG ++  G+ +H  + K 
Sbjct: 58  MIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKG-GLQIHGFLKKT 116

Query: 61  GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
           G   D F+ + L+  Y     +G AR +FD+ P RD V++ +M+DGY K G  E+A ELF
Sbjct: 117 GLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASELF 176

Query: 121 EKMPE--RNAVSWSAIMAAYSRISDFKEVLS-LFRQMQEVGMKPNESGLVSVLTACAHLG 177
           + MP   +N +SW+++++ Y++ S+  ++ S LF +M E  +        S++      G
Sbjct: 177 DLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWN----SMIDGYVKHG 232

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
            I     +     R    ++V+    ++D Y+K G VH A ++F+ + ++D  A+N+M++
Sbjct: 233 RIEDAKDLFDMVPR----RDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMMA 288

Query: 238 GVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
           G   N    ++LE+F  M K S   P ETT V VL+       +   +++      +Y V
Sbjct: 289 GYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMH-----LYIV 343

Query: 297 EPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
           E Q     +    ++D+ ++ G ++ A    E    G+     + W A++    I+G
Sbjct: 344 EKQFLLGGKLGVALIDMYSKCGSIQHAMLVFE----GIENKSIDHWNAMIGGLAIHG 396



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 73/127 (57%)

Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
           W+A++ ++S  +D +  L LF  M E+G+  ++  L  V+ AC+ LG +  GL +H + K
Sbjct: 55  WNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKGGLQIHGFLK 114

Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
           +  L  ++ L   ++ +Y KCG +  A  +F+ +  +D+ ++N+MI G    G  + + E
Sbjct: 115 KTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIESASE 174

Query: 251 LFDRMVK 257
           LFD M +
Sbjct: 175 LFDLMPR 181


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 240/482 (49%), Gaps = 78/482 (16%)

Query: 1   MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
           MIRGY      +  +  + +M   G +P+N+T+P +I +C  L      G  VH  +VK 
Sbjct: 25  MIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCEL-EWYGRGKRVHCEIVKS 83

Query: 61  GFGEDPFVVSSLLEFY--------------------------------SLVHKM------ 82
           GF     V +SL   Y                                 L ++M      
Sbjct: 84  GFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGKYVN 143

Query: 83  ----GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAY 138
                +AR LFD  P+RD+V+W +M+ GY K G   NAR LFEKMPE+N +SW++++ AY
Sbjct: 144 IGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNVISWTSMIGAY 203

Query: 139 SRISD-------------------------------FKEVLSLFRQMQEVGMKPNESGLV 167
           +   D                               F E L+LF QMQ  G+ P+    V
Sbjct: 204 ADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTFV 263

Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
           SVL+AC++LG +  G ++H Y      +  V++ TA+ +MY++CG V  A +VF  I  +
Sbjct: 264 SVLSACSNLGDLEFGKYIH-YLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKR 322

Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
           D   WN +I  +A++G +++++++F  M K+G +P + TF + L  C+H  +V +G  +F
Sbjct: 323 DVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVEEGHIIF 382

Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
            +M   Y + P++ HY C++D+L R G +EEA   +E+        D  +WGALL  CR+
Sbjct: 383 NSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMP---FQPDVAIWGALLGGCRV 439

Query: 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS 407
            G +++  +V  K  EM   +   +VL  NI+  AG  +EA   RK + E  + KK G S
Sbjct: 440 TGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEAADARKKMDEKKISKKTGSS 499

Query: 408 VI 409
           V+
Sbjct: 500 VV 501



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/251 (21%), Positives = 104/251 (41%), Gaps = 26/251 (10%)

Query: 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
           V W+A++  Y+    F+E + +F +M + G+KP+      V+ +C  L    +G  VH  
Sbjct: 20  VIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVHCE 79

Query: 189 AKRYHLEKNVILATAVVDMY------------SKCGHVHSALSVFEGISNKDAGAWNAMI 236
             +   E +  +A ++ +MY            S C  +  A  +F+ +  +    WN MI
Sbjct: 80  IVKSGFESSYAVANSLFNMYLKMPASFDVGLASNC-KLDYARKIFDDMCVRPVELWNQMI 138

Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
                 GD K + ELFD M +        ++ +++        V +   LFE M      
Sbjct: 139 GKYVNIGDVKSARELFDIMPERDI----VSWNSMILGYAKGGKVANARGLFEKMP----- 189

Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
           E  +  +  ++   A    +E A  F E     +   +   W +++S+   +GK      
Sbjct: 190 EKNVISWTSMIGAYADTDDLETARSFFET----MPQRNVVSWNSMISSYAKHGKFVESLN 245

Query: 357 VWRKLAEMGIT 367
           ++ ++   G+T
Sbjct: 246 LFVQMQSEGVT 256



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 24/98 (24%)

Query: 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266
           ++S+ GH  SA  V           WNAMI G A NG  ++ + +FD M + G +P   T
Sbjct: 7   IFSQMGHDSSAEIVI----------WNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFT 56

Query: 267 FVAVLTTC-----------THAKMVRDGLNLFENMSAV 293
           +  V+ +C            H ++V+ G   FE+  AV
Sbjct: 57  YPYVINSCCELEWYGRGKRVHCEIVKSG---FESSYAV 91


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/425 (33%), Positives = 238/425 (56%), Gaps = 18/425 (4%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAH--VVKFGFGEDPFVVSSLLEF 75
           +++M     E ++ +   L   C     LE+ G     H   VK G      V ++L++ 
Sbjct: 99  FVEMRRKRVEIDDVSVVCLFGVC---AKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDM 155

Query: 76  YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
           Y     +   + +F++  ++ VV+WT ++D   K    E  RE+F +MPERNAV+W+ ++
Sbjct: 156 YGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMV 215

Query: 136 AAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
           A Y      +EVL L  +M    G   N   L S+L+ACA  G +  G WVH YA +  +
Sbjct: 216 AGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEM 275

Query: 195 -------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
                    +V++ TA+VDMY+KCG++ S+++VF  +  ++   WNA+ SG+AM+G  + 
Sbjct: 276 MMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRM 335

Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
            +++F +M++   +P + TF AVL+ C+H+ +V +G   F ++   YG+EP+++HYAC+V
Sbjct: 336 VIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLR-FYGLEPKVDHYACMV 393

Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
           DLL RAG++EEAE  + E        +  V G+LL +C ++GK+E+  R+ R+L +M   
Sbjct: 394 DLLGRAGLIEEAEILMREMP---VPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPG 450

Query: 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
           +    +L  N+Y   G    A+ +R  + + G++K PG S I VN  V  F +GD  H +
Sbjct: 451 NTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPR 510

Query: 428 AGEIY 432
             EIY
Sbjct: 511 TKEIY 515



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 19/240 (7%)

Query: 50  GMFVHAHVVKFGFGEDP--FVVSSLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMVD 105
           G  +HA +   G  + P  ++ ++L +FY+   +M TA+ LFD+ P  ++D V WTT++ 
Sbjct: 25  GKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLS 84

Query: 106 GYGKMGDFENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
            + + G   N+ +LF +M  +    + VS   +    +++ D    L   +Q   V +K 
Sbjct: 85  SFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLED----LGFAQQGHGVAVK- 139

Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYH---LEKNVILATAVVDMYSKCGHVHSAL 218
              G+++ +  C  L  +     + S  KR      EK+V+  T V+D   K   +    
Sbjct: 140 --MGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGR 197

Query: 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHA 277
            VF  +  ++A AW  M++G    G  ++ LEL   MV + G      T  ++L+ C  +
Sbjct: 198 EVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQS 257


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 231/439 (52%), Gaps = 43/439 (9%)

Query: 1   MIRGYMQANFPK--LSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENF-GMFVHAHV 57
           MI  Y  ANF K   +V CY  MLD GF P+  T   L+ +C  + P   F G+ VH+H 
Sbjct: 228 MIAAY--ANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSC--MQPKALFHGLLVHSHG 283

Query: 58  VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
           VK G                                D DV    T++  Y K GD  +AR
Sbjct: 284 VKLGC-------------------------------DSDVCVVNTLICMYSKCGDVHSAR 312

Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
            LF  M ++  VSW+ +++AY+      E ++LF  M+  G KP+   ++++++ C   G
Sbjct: 313 FLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTG 372

Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
           A+  G W+ +Y+    L+ NV++  A++DMY+KCG  + A  +F  ++N+   +W  MI+
Sbjct: 373 ALELGKWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMIT 432

Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
             A+NGD K +LELF  M++ G +P   TF+AVL  C H  +V  GL  F  M+  YG+ 
Sbjct: 433 ACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGIN 492

Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
           P ++HY+C+VDLL R G + EA + I+         D+ +W ALLSAC+++GK+E+G  V
Sbjct: 493 PGIDHYSCMVDLLGRKGHLREALEIIKSMP---FEPDSGIWSALLSACKLHGKMEMGKYV 549

Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
             +L E+       +V   NIY  A  W+  A  +R+ +    ++K PG S+I+VNG   
Sbjct: 550 SEQLFELEPQVAVPYVEMANIYASAEMWEGVA-AIRRNMKYLQVRKSPGQSIIQVNGKPT 608

Query: 417 EFLAGDNRHAQAGEIYRVI 435
            F   D  H +   IY ++
Sbjct: 609 IFTVEDRDHPETLYIYDML 627



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 143/273 (52%), Gaps = 7/273 (2%)

Query: 96  DVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
           DV    T++  Y K G+  +A  LF+++    R+ VSW++++AAY+      + ++ ++ 
Sbjct: 188 DVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKG 247

Query: 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213
           M + G  P+ S ++++L++C    A+  GL VHS+  +   + +V +   ++ MYSKCG 
Sbjct: 248 MLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGD 307

Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273
           VHSA  +F G+S+K   +W  MIS  A  G   +++ LF+ M  +G +P   T +A+++ 
Sbjct: 308 VHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISG 367

Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333
           C     +  G    +N S   G++  +     ++D+ A+ G   +A++        +   
Sbjct: 368 CGQTGALELG-KWIDNYSINNGLKDNVVVCNALIDMYAKCGGFNDAKELFYT----MANR 422

Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
               W  +++AC + G ++    ++  + EMG+
Sbjct: 423 TVVSWTTMITACALNGDVKDALELFFMMLEMGM 455



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 155/333 (46%), Gaps = 47/333 (14%)

Query: 18  YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
           +  M   G  PNN TFP ++KAC  L  L N    +HAHV+K  F  + FV         
Sbjct: 41  FRQMKQSGITPNNSTFPFVLKACAKLSHLRN-SQIIHAHVLKSCFQSNIFV--------- 90

Query: 78  LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
                                  T  VD Y K G  E+A  +F +MP R+  SW+A++  
Sbjct: 91  ----------------------QTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLG 128

Query: 138 YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197
           +++      +  L R M+  G++P+   ++ ++ +   + ++T    V+S+  R  +  +
Sbjct: 129 FAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGVHMD 188

Query: 198 VILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRM 255
           V +A  ++  YSKCG++ SA ++F+ I++  +   +WN+MI+  A      K++  +  M
Sbjct: 189 VSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGM 248

Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL----A 311
           +  G  P  +T + +L++C   K +  GL     +   +GV+   +   CVV+ L    +
Sbjct: 249 LDGGFSPDISTILNLLSSCMQPKALFHGL-----LVHSHGVKLGCDSDVCVVNTLICMYS 303

Query: 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344
           + G V  A +F+     G+       W  ++SA
Sbjct: 304 KCGDVHSA-RFL---FNGMSDKTCVSWTVMISA 332



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 116/267 (43%), Gaps = 39/267 (14%)

Query: 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
           +  L LFRQM++ G+ PN S    VL ACA L  +     +H++  +   + N+ + TA 
Sbjct: 35  QNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTAT 94

Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
           VDMY KCG +  A +VF  +  +D  +WNAM+ G A +G   +   L   M  SG +P  
Sbjct: 95  VDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDA 154

Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVY------GVEPQLEHYACVVDLLARAGMVEE 318
            T + ++ +    K +        ++ AVY      GV   +     ++   ++ G +  
Sbjct: 155 VTVLLLIDSILRVKSL-------TSLGAVYSFGIRIGVHMDVSVANTLIAAYSKCGNLCS 207

Query: 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378
           AE   +E   GL    +  W ++++A                       +F  HV + N 
Sbjct: 208 AETLFDEINSGLRSVVS--WNSMIAA---------------------YANFEKHVKAVNC 244

Query: 379 YK---EAGWDMEANKVRKLISETGMKK 402
           YK   + G+  + + +  L+S     K
Sbjct: 245 YKGMLDGGFSPDISTILNLLSSCMQPK 271



 Score = 38.1 bits (87), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
            WN+    +   G A+ +L LF +M +SG  P  +TF  VL  C     +R+   +    
Sbjct: 20  TWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNS-QIIHAH 78

Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEK-FIEEKMGGLGGGDANVWG 339
                 +  +      VD+  + G +E+A   F+E  +  +   +A + G
Sbjct: 79  VLKSCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLG 128


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,988,843,958
Number of Sequences: 23463169
Number of extensions: 289786936
Number of successful extensions: 789509
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7626
Number of HSP's successfully gapped in prelim test: 3990
Number of HSP's that attempted gapping in prelim test: 648744
Number of HSP's gapped (non-prelim): 56685
length of query: 445
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 299
effective length of database: 8,933,572,693
effective search space: 2671138235207
effective search space used: 2671138235207
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)