BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047840
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 93 PDRDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLS 149
P W + + Y K GD++ A E ++K E NA +W + AY + D+++ +
Sbjct: 5 PGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE 64
Query: 150 LFRQMQEVGMKPNES 164
+++ E + PN +
Sbjct: 65 YYQKALE--LDPNNA 77
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 95 RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLF 151
R W + + Y K GD++ A E ++K E R+A +W + AY + D+ E + +
Sbjct: 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Query: 152 RQMQEVGMKPNES 164
++ E+ + E+
Sbjct: 93 QKALELDPRSAEA 105
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 100 WTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
W + + Y K GD++ A E ++K E R+A +W + AY + D+ E + +++ E
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 157 VGMKPNES 164
+ + E+
Sbjct: 64 LDPRSAEA 71
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 93 PDRDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLS 149
P W + + Y K GD++ A E ++K E NA +W + AY + D+ E +
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 150 LFRQMQEVGMKPNES 164
+++ E + PN +
Sbjct: 65 YYQKALE--LDPNNA 77
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 93 PDRDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLS 149
P W + + Y K GD++ A E ++K E NA +W + AY + D+ E +
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 150 LFRQMQEVGMKPNES 164
+++ E + PN +
Sbjct: 65 YYQKALE--LDPNNA 77
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 93 PDRDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLS 149
P W + + Y K GD++ A E ++K E NA +W + AY + D+ E +
Sbjct: 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE 64
Query: 150 LFRQMQEVGMKPNES 164
+++ E + PN +
Sbjct: 65 YYQKALE--LYPNNA 77
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 100 WTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156
W + + Y K GD++ A E ++K E R+A +W + AY + D+ E + +++ E
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Query: 157 V 157
+
Sbjct: 66 L 66
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 84 TARALFDKSPDRDVVTWTTMVDG---YGKMGDFENARELFEKMPE---RNAVSWSAIMAA 137
TA +DK+ + D T +V+ Y + GD+ REL EK E N + I A
Sbjct: 22 TALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRMIAYA 81
Query: 138 YSRISD--FKE 146
Y+RI + FKE
Sbjct: 82 YARIGNSYFKE 92
>pdb|3DDD|A Chain A, Crystal Structure Of A Putative Acetyltransferase
(Np_142035.1) From Pyrococcus Horikoshii At 2.25 A
Resolution
Length = 288
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS-----YNIYKEAGWDMEA 388
+ W L + Y + +G V+R+L E+G T L Y +YK+ + E
Sbjct: 84 NKQAWIGLXGVKKAYQRRGIGTEVFRRLLEIGRRKVDTIRLDASSQGYGLYKKFKFVDEY 143
Query: 389 NKVRKLISETGMKKKPGCSVIEVNGV------VEEFLAGDNR 424
VR + E +K+ G V+EVN + +++ GD+R
Sbjct: 144 RTVRYELXERPIKRVEG--VVEVNKIPNWVKEIDKKAFGDDR 183
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 33/170 (19%)
Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM---VKSGTQPTETT 266
+ GHV V + NKD +W +G+A F+++ + GT P T
Sbjct: 331 QAGHVSMCTKVHAEVDNKDMRSW----TGIAYP---------FNKLCYAIGDGTTPAGNT 377
Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAV-------YGVEPQLEH------YACVVDLLARA 313
+ T A ++ ++ E + AV +GV+ + H +A +R
Sbjct: 378 HLVCFG--TDANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRP 435
Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
GMV E + + EK GG+ +++ W AL I G IE G R R + E
Sbjct: 436 GMVSECLQGLREKHGGVVFANSD-W-ALGWRSFIDGAIEEGTRAARVVLE 483
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 33/170 (19%)
Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM---VKSGTQPTETT 266
+ GHV V + NKD +W +G+A F+++ + GT P T
Sbjct: 331 QAGHVSMCTKVHAEVDNKDMRSW----TGIAYP---------FNKLCYAIGDGTTPAGNT 377
Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAV-------YGVEPQLEH------YACVVDLLARA 313
+ T A ++ ++ E + AV +GV+ + H +A +R
Sbjct: 378 HLVCFG--TDANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRP 435
Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
GMV E + + EK GG+ +++ W AL I G IE G R R + E
Sbjct: 436 GMVSECLQGLREKHGGVVFANSD-W-ALGWRSFIDGAIEEGTRAARVVLE 483
>pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
pdb|3OYR|B Chain B, Crystal Structure Of Polyprenyl Synthase From Caulobacter
Crescentus Cb15 Complexed With Calcium And Isoprenyl
Diphosphate
Length = 345
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 9/163 (5%)
Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ-----MQEVGMKPNES 164
+GDF AR FE M E N++ I+A SR+ EVL L R Q V ++ ++
Sbjct: 132 VGDFLFARA-FELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLEIIQA 190
Query: 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224
+ A + GA++ G+ V N+ LA + D G L G
Sbjct: 191 KTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGD 250
Query: 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
++ A ++ +A +G + E ++R + Q TE F
Sbjct: 251 DFREGKATLPLLLAIARSG--PREAEFWERAIGRREQ-TEADF 290
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 84 TARALFDKSPDRDVVTWTTMVDG---YGKMGDFENARELFEKMPE---RNAVSWSAIMAA 137
TA +DK+ + D T + + Y + GD+ REL EK E N + I A
Sbjct: 22 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81
Query: 138 YSRISD--FKE 146
Y+RI + FKE
Sbjct: 82 YARIGNSYFKE 92
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 31.6 bits (70), Expect = 0.98, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 84 TARALFDKSPDRDVVTWTTMVDG---YGKMGDFENARELFEKMPE---RNAVSWSAIMAA 137
TA +DK+ + D T + + Y + GD+ REL EK E N + I A
Sbjct: 22 TALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81
Query: 138 YSRISD--FKE 146
Y+RI + FKE
Sbjct: 82 YARIGNSYFKE 92
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 3 RGYMQANFPKLSVFCYLDMLDMGFE 27
R Y+QA FP+L C+ + D FE
Sbjct: 1705 RAYLQARFPQLDETCFANSRDTSFE 1729
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 24/143 (16%)
Query: 53 VHAHVVKFGFGEDP-------FVVSSLLEFY-SLVHKMGTARALFDKSPD-RDVVTWTTM 103
+H ++ GE P F ++ F+ LV T R ++S + R + W
Sbjct: 42 IHGLRPEYSGGERPSCCTGGSFDPDEIMPFFGKLVEYWPTYRCALEQSCNNRKEILWGQQ 101
Query: 104 VDGYGKMGD---------FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154
+ +G F+ +LF K A+ + I+A+ S++ D K+++
Sbjct: 102 YEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVAVESA 161
Query: 155 QEVGMKP----NESGLVSVLTAC 173
VG +P +E GLV L+ C
Sbjct: 162 --VGARPKLRCDEEGLVQKLSLC 182
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 33/170 (19%)
Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM---VKSGTQPTETT 266
+ GHV V + NKD +W +G+A F+++ + GT P T
Sbjct: 331 QAGHVSMCTKVHAEVDNKDMRSW----TGIAYP---------FNKLCYAIGDGTTPAGNT 377
Query: 267 FVAVLTTCTHAKMVRDGLNLFENMSAV-------YGVEPQLEH------YACVVDLLARA 313
+ A ++ ++ E + AV +GV+ + H +A +R
Sbjct: 378 HLVCFGNS--ANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKDEFAKGAWFFSRP 435
Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363
GMV E + + EK GG+ +++ W AL I G IE G R R + E
Sbjct: 436 GMVSECLQGLREKHGGVVFANSD-W-ALGWRSFIDGAIEEGTRAARVVLE 483
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK 257
V SVF G+ + ++ W MISG+ N D E F +M++
Sbjct: 445 VDELASVF-GLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQ 487
>pdb|3L19|A Chain A, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
pdb|3L19|B Chain B, Crystal Structure Of Calcium Binding Domain Of Cpcdpk3,
Cgd5_820
Length = 214
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 214 VHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK---SGTQP 262
V SVF G+ + ++ W MISG+ N D E F +M++ S +P
Sbjct: 162 VDELASVF-GLDHLESKTWKEMISGIDSNNDGDVDFEEFCKMIQKLCSNNEP 212
>pdb|1AGX|A Chain A, Refined Crystal Structure Of Acinetobacter
Glutaminasificans Glutaminase-Asparaginase
Length = 331
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 119 LFEKMPERNAVS----WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
L + +P+ N ++ A+ A I+D KE+LSL RQ+ ++ KP+ +G+V
Sbjct: 36 LIKAVPQVNDLANITGIQALQVASESITD-KELLSLARQVNDLVKKPSVNGVV 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,500,273
Number of Sequences: 62578
Number of extensions: 566142
Number of successful extensions: 1121
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 26
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)