BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047840
(445 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 332 bits (850), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 253/432 (58%), Gaps = 6/432 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MIRG+ ++ P+ S+ Y ML N YTFP L+KAC L E +HA + K
Sbjct: 86 MIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ-IHAQITKL 144
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+ D + V+SL+ Y++ A LFD+ P+ D V+W +++ GY K G + A LF
Sbjct: 145 GYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLF 204
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
KM E+NA+SW+ +++ Y + KE L LF +MQ ++P+ L + L+ACA LGA+
Sbjct: 205 RKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALE 264
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
QG W+HSY + + + +L ++DMY+KCG + AL VF+ I K AW A+ISG A
Sbjct: 265 QGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYA 324
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
+G ++++ F M K G +P TF AVLT C++ +V +G +F +M Y ++P +
Sbjct: 325 YHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTI 384
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDLL RAG+++EA++FI+E +A +WGALL ACRI+ IE+G +
Sbjct: 385 EHYGCIVDLLGRAGLLDEAKRFIQEMP---LKPNAVIWGALLKACRIHKNIELGEEIGEI 441
Query: 361 LAEMGITDFSTHVLSYNIYK-EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L + +V NI+ + WD +A + R+L+ E G+ K PGCS I + G EFL
Sbjct: 442 LIAIDPYHGGRYVHKANIHAMDKKWD-KAAETRRLMKEQGVAKVPGCSTISLEGTTHEFL 500
Query: 420 AGDNRHAQAGEI 431
AGD H + +I
Sbjct: 501 AGDRSHPEIEKI 512
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 136/367 (37%), Gaps = 89/367 (24%)
Query: 53 VHAHVVKFGFGEDPFVVSSLLEF---YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGK 109
+HA ++K G +D + ++ L F + + A+ +FD D W M+ G+
Sbjct: 33 IHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFSC 92
Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
+ PER+ L L+++M N S+
Sbjct: 93 SDE-----------PERS--------------------LLLYQRMLCSSAPHNAYTFPSL 121
Query: 170 LTACAHLGAITQGLWVH--------------------SYA-----KRYHL------EKNV 198
L AC++L A + +H SYA K HL E +
Sbjct: 122 LKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181
Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
+ +V+ Y K G + AL++F ++ K+A +W MISG K++L+LF M S
Sbjct: 182 VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS 241
Query: 259 GTQPTETTFVAVLTTCT------HAKMVRDGLNLFE-NMSAVYGVEPQLEHYACV-VDLL 310
+P + L+ C K + LN M +V G CV +D+
Sbjct: 242 DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG---------CVLIDMY 292
Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370
A+ G +EEA E + W AL+S +G G K EM
Sbjct: 293 AKCGEMEEA----LEVFKNIKKKSVQAWTALISGYAYHGH---GREAISKFMEMQKMGIK 345
Query: 371 THVLSYN 377
+V+++
Sbjct: 346 PNVITFT 352
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 331 bits (848), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 159/438 (36%), Positives = 270/438 (61%), Gaps = 4/438 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I GY + + +++ Y M G +P++ T L+ +C +LG L N G + +V +
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDL-NRGKEFYEYVKEN 286
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G +V++L++ +S + AR +FD R +V+WTTM+ GY + G + +R+LF
Sbjct: 287 GLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLF 346
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ M E++ V W+A++ + ++ L+LF++MQ KP+E ++ L+AC+ LGA+
Sbjct: 347 DDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALD 406
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G+W+H Y ++Y L NV L T++VDMY+KCG++ ALSVF GI +++ + A+I G+A
Sbjct: 407 VGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLA 466
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
++GDA ++ F+ M+ +G P E TF+ +L+ C H M++ G + F M + + + PQL
Sbjct: 467 LHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQL 526
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
+HY+ +VDLL RAG++EEA++ +E DA VWGALL CR++G +E+G + +K
Sbjct: 527 KHYSIMVDLLGRAGLLEEADRLMESMP---MEADAAVWGALLFGCRMHGNVELGEKAAKK 583
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
L E+ +D +VL +Y EA +A + R++++E G++K PGCS IEVNG+V EF+
Sbjct: 584 LLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIV 643
Query: 421 GDNRHAQAGEIYRVIHSF 438
D ++ +IY +H
Sbjct: 644 RDKSRPESEKIYDRLHCL 661
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/399 (23%), Positives = 173/399 (43%), Gaps = 71/399 (17%)
Query: 2 IRGYMQANFPKLSVFCYLDMLDMGF---EPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
IRG+ ++ PK S Y ML G P+++T+P L K C L L + G + HV+
Sbjct: 125 IRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL-RLSSLGHMILGHVL 183
Query: 59 KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
K LE S VH + + GD ENAR+
Sbjct: 184 KLR-----------LELVSHVHNAS--------------------IHMFASCGDMENARK 212
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
+F++ P R+ VSW+ ++ Y +I + ++ + +++ M+ G+KP++ ++ ++++C+ LG
Sbjct: 213 VFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGD 272
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN------------ 226
+ +G + Y K L + L A++DM+SKCG +H A +F+ +
Sbjct: 273 LNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISG 332
Query: 227 -------------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
KD WNAMI G + +L LF M S T+P E T
Sbjct: 333 YARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITM 392
Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
+ L+ C+ + G+ + + Y + + +VD+ A+ G + EA
Sbjct: 393 IHCLSACSQLGALDVGIWIHRYIEK-YSLSLNVALGTSLVDMYAKCGNISEALSVFH--- 448
Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
G+ ++ + A++ ++G + ++ + GI
Sbjct: 449 -GIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGI 486
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/334 (19%), Positives = 141/334 (42%), Gaps = 41/334 (12%)
Query: 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
L++ C +L L+ + A ++ G DPF S L+ F +L +R L
Sbjct: 59 LLEKCKLLLHLKQ----IQAQMIINGLILDPFASSRLIAFCAL----SESRYL------- 103
Query: 96 DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
+ + ++ + + N SW+ + +S + KE L++QM
Sbjct: 104 ------------------DYSVKILKGIENPNIFSWNVTIRGFSESENPKESFLLYKQML 145
Query: 156 EVGM---KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
G +P+ + CA L + G + + + LE + A + M++ CG
Sbjct: 146 RHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCG 205
Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
+ +A VF+ +D +WN +I+G G+A+K++ ++ M G +P + T + +++
Sbjct: 206 DMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVS 265
Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
+C+ + G +E + G+ + ++D+ ++ G + EA + + L
Sbjct: 266 SCSMLGDLNRGKEFYEYVKE-NGLRMTIPLVNALMDMFSKCGDIHEARRIFD----NLEK 320
Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
W ++S G ++V +++ + E +
Sbjct: 321 RTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDV 354
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 325 bits (833), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 165/448 (36%), Positives = 277/448 (61%), Gaps = 21/448 (4%)
Query: 1 MIRGYMQANFPK--LSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHV 57
+IRG+ +++ K +++ + +M+ F EPN +TFP ++KAC G ++ G +H
Sbjct: 96 IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQE-GKQIHGLA 154
Query: 58 VKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKS--------------PDRDVVTWTTM 103
+K+GFG D FV+S+L+ Y + M AR LF K+ D ++V W M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214
Query: 104 VDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
+DGY ++GD + AR LF+KM +R+ VSW+ +++ YS FK+ + +FR+M++ ++PN
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274
Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
LVSVL A + LG++ G W+H YA+ + + +L +A++DMYSKCG + A+ VFE
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334
Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283
+ ++ W+AMI+G A++G A +++ F +M ++G +P++ ++ +LT C+H +V +G
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394
Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343
F M +V G+EP++EHY C+VDLL R+G+++EAE+FI + D +W ALL
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFI---LNMPIKPDDVIWKALLG 451
Query: 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403
ACR+ G +E+G RV L +M D +V N+Y G E +++R + E ++K
Sbjct: 452 ACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511
Query: 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
PGCS+I+++GV+ EF+ D+ H +A EI
Sbjct: 512 PGCSLIDIDGVLHEFVVEDDSHPKAKEI 539
Score = 92.0 bits (227), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 70/305 (22%), Positives = 135/305 (44%), Gaps = 57/305 (18%)
Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL---FRQMQEVGMKPNESGLVS 168
D + A ++F +MP+RN SW+ I+ +S + K ++++ + M + ++PN S
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 169 VLTACAHLGAITQGLWVHSYAKRYH--------------------------------LEK 196
VL ACA G I +G +H A +Y +EK
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 197 NVILAT-------------AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG 243
++++ T ++D Y + G +A +F+ + + +WN MISG ++NG
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLE 301
K ++E+F M K +P T V+VL + + G L+L+ S G+
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDS---GIRIDDV 310
Query: 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361
+ ++D+ ++ G++E+A E L + W A+++ I+G+ + K+
Sbjct: 311 LGSALIDMYSKCGIIEKAIHVFER----LPRENVITWSAMINGFAIHGQAGDAIDCFCKM 366
Query: 362 AEMGI 366
+ G+
Sbjct: 367 RQAGV 371
>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540
OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1
Length = 622
Score = 322 bits (825), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 173/440 (39%), Positives = 266/440 (60%), Gaps = 17/440 (3%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKA-----CVILGPLENFGMFVHA 55
+IR + P + Y ML P+N TFP LIKA CV++G H+
Sbjct: 88 LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQ------THS 141
Query: 56 HVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
+V+FGF D +V +SL+ Y+ + A +F + RDVV+WT+MV GY K G EN
Sbjct: 142 QIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVEN 201
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
ARE+F++MP RN +WS ++ Y++ + F++ + LF M+ G+ NE+ +VSV+++CAH
Sbjct: 202 AREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAH 261
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
LGA+ G + Y + H+ N+IL TA+VDM+ +CG + A+ VFEG+ D+ +W+++
Sbjct: 262 LGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSI 321
Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
I G+A++G A K++ F +M+ G P + TF AVL+ C+H +V GL ++ENM +G
Sbjct: 322 IKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHG 381
Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
+EP+LEHY C+VD+L RAG + EAE FI + +A + GALL AC+IY EV
Sbjct: 382 IEPRLEHYGCIVDMLGRAGKLAEAENFI---LKMHVKPNAPILGALLGACKIYKNTEVAE 438
Query: 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
RV L ++ +VL NIY AG WD + +R ++ E +KK PG S+IE++G
Sbjct: 439 RVGNMLIKVKPEHSGYYVLLSNIYACAGQWD-KIESLRDMMKEKLVKKPPGWSLIEIDGK 497
Query: 415 VEEFLAGDN-RHAQAGEIYR 433
+ +F GD+ +H + G+I R
Sbjct: 498 INKFTMGDDQKHPEMGKIRR 517
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 120/278 (43%), Gaps = 36/278 (12%)
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
+F ++ N ++ ++ +S ++ + + QM + + P+ ++ A + +
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
+ G HS R+ + +V + ++V MY+ CG + +A +F + +D +W +M++G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192
Query: 239 --------------------------VAMNGDAK-----KSLELFDRMVKSGTQPTETTF 267
+ +NG AK K+++LF+ M + G ET
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252
Query: 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
V+V+++C H + G +E + + + L +VD+ R G +E+A E
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSH-MTVNLILGTALVDMFWRCGDIEKAIHVFE--- 308
Query: 328 GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
GL D+ W +++ ++G + ++ +G
Sbjct: 309 -GLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLG 345
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 318 bits (815), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 258/434 (59%), Gaps = 8/434 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
MIR + ++ P+ S Y +L G +P+NYT L++AC L E G+ VH +
Sbjct: 77 MIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET-GLQVHGMTI 135
Query: 59 KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
+ GF DP V + L+ Y+ + + + +F+ P D V T MV + GD AR+
Sbjct: 136 RRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARK 195
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
LFE MPER+ ++W+A+++ Y+++ + +E L++F MQ G+K N ++SVL+AC LGA
Sbjct: 196 LFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGA 255
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
+ QG W HSY +R ++ V LAT +VD+Y+KCG + A+ VF G+ K+ W++ ++G
Sbjct: 256 LDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNG 315
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+AMNG +K LELF M + G P TFV+VL C+ V +G F++M +G+EP
Sbjct: 316 LAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEP 375
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
QLEHY C+VDL ARAG +E+A I++ A VW +LL A R+Y +E+G
Sbjct: 376 QLEHYGCLVDLYARAGRLEDAVSIIQQMP---MKPHAAVWSSLLHASRMYKNLELGVLAS 432
Query: 359 RKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
+K+ E+ + +VL NIY ++ WD + VR+ + G++K+PGCSV+EVNG V E
Sbjct: 433 KKMLELETANHGAYVLLSNIYADSNDWD-NVSHVRQSMKSKGVRKQPGCSVMEVNGEVHE 491
Query: 418 FLAGDNRHAQAGEI 431
F GD H + +I
Sbjct: 492 FFVGDKSHPKYTQI 505
>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890
OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
Length = 573
Score = 317 bits (811), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 249/431 (57%), Gaps = 13/431 (3%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLE-NFGMFVHAHVVKFGFGEDPFVVSSLLEFY 76
YL M + P+ +TFP L+ + PL G HA ++ FG +DPFV +SLL Y
Sbjct: 50 YLRMRNHRVSPDFHTFPFLLPS--FHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY 107
Query: 77 SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
S + +A+ +FD S +D+ W ++V+ Y K G ++AR+LF++MPERN +SWS ++
Sbjct: 108 SSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLIN 167
Query: 137 AYSRISDFKEVLSLFRQMQ-----EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191
Y +KE L LFR+MQ E ++PNE + +VL+AC LGA+ QG WVH+Y +
Sbjct: 168 GYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDK 227
Query: 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI-SNKDAGAWNAMISGVAMNGDAKKSLE 250
YH+E +++L TA++DMY+KCG + A VF + S KD A++AMI +AM G + +
Sbjct: 228 YHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQ 287
Query: 251 LFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309
LF M S P TFV +L C H ++ +G + F+ M +G+ P ++HY C+VDL
Sbjct: 288 LFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDL 347
Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369
R+G+++EAE FI D +WG+LLS R+ G I+ ++L E+ +
Sbjct: 348 YGRSGLIKEAESFIASMP---MEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNS 404
Query: 370 STHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG 429
+VL N+Y + G ME +R + G+ K PGCS +EV GVV EF+ GD ++
Sbjct: 405 GAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESE 464
Query: 430 EIYRVIHSFLK 440
IY ++ ++
Sbjct: 465 RIYAMLDEIMQ 475
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 315 bits (806), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 157/420 (37%), Positives = 250/420 (59%), Gaps = 10/420 (2%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS 77
Y+ +L PN +TF L+K+C G +H HV+KFG G DP+V + L++ Y+
Sbjct: 118 YVQLLSSEINPNEFTFSSLLKSCST-----KSGKLIHTHVLKFGLGIDPYVATGLVDVYA 172
Query: 78 LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAA 137
+ +A+ +FD+ P+R +V+ T M+ Y K G+ E AR LF+ M ER+ VSW+ ++
Sbjct: 173 KGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDG 232
Query: 138 YSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK 196
Y++ + L LF+++ G KP+E +V+ L+AC+ +GA+ G W+H + K +
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292
Query: 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256
NV + T ++DMYSKCG + A+ VF KD AWNAMI+G AM+G ++ +L LF+ M
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352
Query: 257 K-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
+G QPT+ TF+ L C HA +V +G+ +FE+M YG++P++EHY C+V LL RAG
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412
Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375
++ A + I+ D+ +W ++L +C+++G +G + L + I + +VL
Sbjct: 413 LKRAYETIKNMN---MDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLL 469
Query: 376 YNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
NIY G KVR L+ E G+ K+PG S IE+ V EF AGD H+++ EIY ++
Sbjct: 470 SNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTML 529
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 130/298 (43%), Gaps = 51/298 (17%)
Query: 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165
Y G ++ LF + + + ++A + S + L+ Q+ + PNE
Sbjct: 73 AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132
Query: 166 LVSVLTACAHLGAITQGLWVHSYAKRYHL------------------------------- 194
S+L +C + G +H++ ++ L
Sbjct: 133 FSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188
Query: 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254
E++++ +TA++ Y+K G+V +A ++F+ + +D +WN MI G A +G +L LF +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248
Query: 255 MVKSG-TQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYAC--VVDL 309
++ G +P E T VA L+ C+ + G +++F S + +L C ++D+
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRI-----RLNVKVCTGLIDM 303
Query: 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
++ G +EEA + D W A+++ ++G + R++ ++ GIT
Sbjct: 304 YSKCGSLEEAVLVFNDT----PRKDIVAWNAMIAGYAMHGYSQDALRLFNEM--QGIT 355
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 75/158 (47%), Gaps = 22/158 (13%)
Query: 178 AITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
++ + L +H+ R++L + +L + Y+ G + +L++F + D + A
Sbjct: 41 SVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 100
Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-------HAKMVRDGLNLF 287
I+ ++NG ++ L+ +++ S P E TF ++L +C+ H +++ GL
Sbjct: 101 AINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFGL--- 157
Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
G++P + +VD+ A+ G V A+K +
Sbjct: 158 -------GIDPYVA--TGLVDVYAKGGDVVSAQKVFDR 186
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 256/439 (58%), Gaps = 5/439 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFE-PNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
+IR Y + + Y +L FE P+ +TFP + K+C LG G VH H+ K
Sbjct: 79 IIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCY-LGKQVHGHLCK 137
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
FG ++L++ Y + A +FD+ +RDV++W +++ GY ++G + A+ L
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGL 197
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F M ++ VSW+A+++ Y+ I + E + FR+MQ G++P+E L+SVL +CA LG++
Sbjct: 198 FHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSL 257
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G W+H YA+R K + A+++MYSKCG + A+ +F + KD +W+ MISG
Sbjct: 258 ELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGY 317
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
A +G+A ++E F+ M ++ +P TF+ +L+ C+H M ++GL F+ M Y +EP+
Sbjct: 318 AYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPK 377
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
+EHY C++D+LARAG +E A +E D+ +WG+LLS+CR G ++V
Sbjct: 378 IEHYGCLIDVLARAGKLERA---VEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMD 434
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L E+ D +VL NIY + G + +++RK+I MKK PG S+IEVN +V+EF+
Sbjct: 435 HLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFV 494
Query: 420 AGDNRHAQAGEIYRVIHSF 438
+GDN EI V+ F
Sbjct: 495 SGDNSKPFWTEISIVLQLF 513
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 135/306 (44%), Gaps = 46/306 (15%)
Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
T MVD K+ D + A LF ++ N +++I+ AY+ S + +V+ +++Q+ +
Sbjct: 46 TKMVDFCDKIEDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFE 105
Query: 161 -PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219
P+ + +CA LG+ G VH + ++ +V+ A++DMY K + A
Sbjct: 106 LPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHK 165
Query: 220 VFEGISNKDAGAWNAMISGVAMNGDAKK-------------------------------S 248
VF+ + +D +WN+++SG A G KK +
Sbjct: 166 VFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEA 225
Query: 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEPQLEHYACV 306
++ F M +G +P E + ++VL +C + G ++L+ G Q +
Sbjct: 226 MDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERR---GFLKQTGVCNAL 282
Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC----RIYGKIEVGNRVWR-KL 361
+++ ++ G++ +A + G + G D W ++S +G IE N + R K+
Sbjct: 283 IEMYSKCGVISQAIQLF----GQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKV 338
Query: 362 AEMGIT 367
GIT
Sbjct: 339 KPNGIT 344
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 256/441 (58%), Gaps = 8/441 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI G++ + V Y M+ P+NY ++KAC + E +HA V+K
Sbjct: 98 MIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCRE-----IHAQVLKL 152
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GFG V ++E Y ++ A+ +FD+ PDRD V T M++ Y + G + A ELF
Sbjct: 153 GFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELF 212
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ + ++ V W+A++ R + + L LFR+MQ + NE V VL+AC+ LGA+
Sbjct: 213 QDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALE 272
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G WVHS+ + +E + + A+++MYS+CG ++ A VF + +KD ++N MISG+A
Sbjct: 273 LGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLA 332
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
M+G + +++ F MV G +P + T VA+L C+H ++ GL +F +M V+ VEPQ+
Sbjct: 333 MHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQI 392
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDLL R G +EEA +FIE D + G LLSAC+I+G +E+G ++ ++
Sbjct: 393 EHYGCIVDLLGRVGRLEEAYRFIENIP---IEPDHIMLGTLLSACKIHGNMELGEKIAKR 449
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
L E D T+VL N+Y +G E+ ++R+ + ++G++K+PGCS IEV+ + EFL
Sbjct: 450 LFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLV 509
Query: 421 GDNRHAQAGEIYRVIHSFLKM 441
GD H IY+ + ++
Sbjct: 510 GDIAHPHKEAIYQRLQELNRI 530
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 106/226 (46%), Gaps = 10/226 (4%)
Query: 53 VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
+HA +++ +D FVV L+ S + + A +F + +V +T M+DG+ G
Sbjct: 48 IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107
Query: 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172
+ L+ +M + + + ++ + + D K + Q+ ++G + S + ++
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHAQVLKLGFGSSRSVGLKMMEI 167
Query: 173 CAHLGAITQGLWVHSYAKRYHLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
G + AK+ E ++ + AT +++ YS+CG + AL +F+ + KD
Sbjct: 168 YGKSGELVN-------AKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDT 220
Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275
W AMI G+ N + K+LELF M E T V VL+ C+
Sbjct: 221 VCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACS 266
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 304 bits (779), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 254/442 (57%), Gaps = 16/442 (3%)
Query: 1 MIRGYMQANFPKLSVFCYLDML--DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
+IRG+ +++FP++++ ++DML +P T+P + KA LG + G +H V+
Sbjct: 95 IIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARD-GRQLHGMVI 153
Query: 59 KFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
K G +D F+ +++L Y + A +F DVV W +M+ G+ K G + A+
Sbjct: 154 KEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQN 213
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
LF++MP+RN VSW+++++ + R FK+ L +FR+MQE +KP+ +VS+L ACA+LGA
Sbjct: 214 LFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGA 273
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
QG W+H Y R E N I+ TA++DMY KCG + L+VFE K WN+MI G
Sbjct: 274 SEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILG 333
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+A NG +++++LF + +SG +P +F+ VLT C H+ V F M Y +EP
Sbjct: 334 LANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEP 393
Query: 299 QLEHYACVVDLLARAGMVEEAEKFI-----EEKMGGLGGGDANVWGALLSACRIYGKIEV 353
++HY +V++L AG++EEAE I EE D +W +LLSACR G +E+
Sbjct: 394 SIKHYTLMVNVLGGAGLLEEAEALIKNMPVEE--------DTVIWSSLLSACRKIGNVEM 445
Query: 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
R + L ++ + +VL N Y G EA + R L+ E M+K+ GCS IEV+
Sbjct: 446 AKRAAKCLKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDF 505
Query: 414 VVEEFLAGDNRHAQAGEIYRVI 435
V EF++ H ++ EIY ++
Sbjct: 506 EVHEFISCGGTHPKSAEIYSLL 527
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 77/353 (21%)
Query: 112 DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSV 169
D A +F ++ +N W+ I+ +SR S + +S+F M +KP SV
Sbjct: 73 DMNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSV 132
Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY--------------------- 208
A LG G +H + LE + + ++ MY
Sbjct: 133 FKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDV 192
Query: 209 ----------SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
+KCG + A ++F+ + ++ +WN+MISG NG K +L++F M +
Sbjct: 193 VAWNSMIMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEK 252
Query: 259 GTQPTETTFVAVLTTCT-----------HAKMVR------------------------DG 283
+P T V++L C H +VR +G
Sbjct: 253 DVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEG 312
Query: 284 LNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEKMGGLGGGDANVWGALL 342
LN+FE + QL + ++ LA G E A + F E + GL + G +L
Sbjct: 313 LNVFE-----CAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIG-VL 366
Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFST--HVLSYNIYKEAGWDMEANKVRK 393
+AC G++ + +R + E + + S + L N+ AG EA + K
Sbjct: 367 TACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIK 419
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/441 (34%), Positives = 262/441 (59%), Gaps = 5/441 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI G++Q P ++ + M + ++ T ++ AC + LE FG V +++ +
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLE-FGRQVCSYIEEN 261
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
+ + +++L+ Y+ + A+ LFD ++D VTWTTM+DGY D+E ARE+
Sbjct: 262 RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVL 321
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
MP+++ V+W+A+++AY + E L +F ++Q + MK N+ LVS L+ACA +GA+
Sbjct: 322 NSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGAL 381
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G W+HSY K++ + N + +A++ MYSKCG + + VF + +D W+AMI G+
Sbjct: 382 ELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGL 441
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
AM+G +++++F +M ++ +P TF V C+H +V + +LF M + YG+ P+
Sbjct: 442 AMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPE 501
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
+HYAC+VD+L R+G +E+A KFIE +VWGALL AC+I+ + +
Sbjct: 502 EKHYACIVDVLGRSGYLEKAVKFIE---AMPIPPSTSVWGALLGACKIHANLNLAEMACT 558
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
+L E+ + HVL NIY + G +++RK + TG+KK+PGCS IE++G++ EFL
Sbjct: 559 RLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFL 618
Query: 420 AGDNRHAQAGEIYRVIHSFLK 440
+GDN H + ++Y +H ++
Sbjct: 619 SGDNAHPMSEKVYGKLHEVME 639
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 126/256 (49%), Gaps = 33/256 (12%)
Query: 1 MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
+IR Y P LS++ +LDM+ + PN YTFP LIKA + L + G +H VK
Sbjct: 101 LIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL-SLGQSLHGMAVK 159
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
G D FV +SL+ Y + +A +F ++DVV+W +M++G+ + G + A EL
Sbjct: 160 SAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALEL 219
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F+KM + +K + +V VL+ACA + +
Sbjct: 220 FKKMESED-------------------------------VKASHVTMVGVLSACAKIRNL 248
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G V SY + + N+ LA A++DMY+KCG + A +F+ + KD W M+ G
Sbjct: 249 EFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGY 308
Query: 240 AMNGDAKKSLELFDRM 255
A++ D + + E+ + M
Sbjct: 309 AISEDYEAAREVLNSM 324
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 177/410 (43%), Gaps = 58/410 (14%)
Query: 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95
LI+ CV L L+ H H+++ G DP+ S L +L
Sbjct: 36 LIERCVSLRQLKQ----THGHMIRTGTFSDPYSASKLFAMAAL----------------- 74
Query: 96 DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF---R 152
E AR++F+++P+ N+ +W+ ++ AY+ D VLS++
Sbjct: 75 ------------SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPD--PVLSIWAFLD 120
Query: 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
+ E PN+ ++ A A + +++ G +H A + + +V +A +++ Y CG
Sbjct: 121 MVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCG 180
Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
+ SA VF I KD +WN+MI+G G K+LELF +M + + T V VL+
Sbjct: 181 DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLS 240
Query: 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332
C + + G + + V L ++D+ + G +E+A++ + +
Sbjct: 241 ACAKIRNLEFGRQVCSYIEE-NRVNVNLTLANAMLDMYTKCGSIEDAKRLFD----AMEE 295
Query: 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392
D W +L I E V + + I ++ + + Y++ G + N+
Sbjct: 296 KDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALI---SAYEQNG---KPNEAL 349
Query: 393 KLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG--EIYRVIHSFLK 440
+ E ++K +++N + ++ + AQ G E+ R IHS++K
Sbjct: 350 IVFHELQLQKN-----MKLNQIT--LVSTLSACAQVGALELGRWIHSYIK 392
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 298 bits (764), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 160/439 (36%), Positives = 259/439 (58%), Gaps = 8/439 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+IRG+ + P+ S+ Y+ ML G P++ T+P L+K+ L G +H VVK
Sbjct: 79 VIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSN-RKLGGSLHCSVVKS 137
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G D F+ ++L+ Y +AR LFD+ P +++VTW +++D Y K GD +AR +F
Sbjct: 138 GLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVF 197
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAI 179
++M ER+ V+WS+++ Y + ++ + L +F QM +G K NE +VSV+ ACAHLGA+
Sbjct: 198 DEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGAL 257
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF--EGISNKDAGAWNAMIS 237
+G VH Y HL VIL T+++DMY+KCG + A SVF + DA WNA+I
Sbjct: 258 NRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIG 317
Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
G+A +G ++SL+LF +M +S P E TF+ +L C+H +V++ + F+++ G E
Sbjct: 318 GLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKES-GAE 376
Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
P+ EHYAC+VD+L+RAG+V++A FI E G ++ GALL+ C +G +E+ V
Sbjct: 377 PKSEHYACMVDVLSRAGLVKDAHDFISEMPIKPTG---SMLGALLNGCINHGNLELAETV 433
Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
+KL E+ + +V N+Y A +R+ + + G+KK G S+++++G
Sbjct: 434 GKKLIELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHR 493
Query: 418 FLAGDNRHAQAGEIYRVIH 436
F+A D H + +IY V+
Sbjct: 494 FIAHDKTHFHSDKIYAVLQ 512
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 134/328 (40%), Gaps = 39/328 (11%)
Query: 71 SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVS 130
S+ E Y +H + L ++ P V+ T GD + A + K+ +
Sbjct: 20 SMSELYK-IHTLLITLGLSEEEP---FVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYG 75
Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
W+ ++ +S + ++ +S++ QM G+ P+ ++ + + L G +H
Sbjct: 76 WNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVV 135
Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN----------------- 233
+ LE ++ + ++ MY SA +F+ + +K+ WN
Sbjct: 136 KSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARL 195
Query: 234 --------------AMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAK 278
+MI G G+ K+LE+FD+M++ G ++ E T V+V+ C H
Sbjct: 196 VFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLG 255
Query: 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338
+ G + + V+ + + ++D+ A+ G + +A + DA +W
Sbjct: 256 ALNRGKTVHRYILDVH-LPLTVILQTSLIDMYAKCGSIGDAWSVFYR--ASVKETDALMW 312
Query: 339 GALLSACRIYGKIEVGNRVWRKLAEMGI 366
A++ +G I +++ K+ E I
Sbjct: 313 NAIIGGLASHGFIRESLQLFHKMRESKI 340
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 240/408 (58%), Gaps = 4/408 (0%)
Query: 32 TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91
T + AC L LE G ++ VV F + ++L++ + + ARA+FD
Sbjct: 150 TIVSTLSACSALKNLE-IGERIYRFVVT-EFEMSVRIGNALVDMFCKCGCLDKARAVFDS 207
Query: 92 SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF 151
D++V WT+MV GY G + AR LFE+ P ++ V W+A+M Y + + F E L LF
Sbjct: 208 MRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELF 267
Query: 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211
R MQ G++P+ LVS+LT CA GA+ QG W+H Y + + ++ TA+VDMY+KC
Sbjct: 268 RCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKC 327
Query: 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271
G + +AL VF I +D +W ++I G+AMNG + ++L+L+ M G + TFVAVL
Sbjct: 328 GCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVL 387
Query: 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331
T C H V +G +F +M+ + V+P+ EH +C++DLL RAG+++EAE+ I++ G
Sbjct: 388 TACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKMRGESD 447
Query: 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391
V+ +LLSA R YG +++ RV KL ++ ++D S H L ++Y A + V
Sbjct: 448 ETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDSSAHTLLASVYASANRWEDVTNV 507
Query: 392 RKLISETGMKKKPGCSVIEVNGVVEEFLAGDN--RHAQAGEIYRVIHS 437
R+ + + G++K PGCS IE++GV EF+ GD+ H + EI ++H
Sbjct: 508 RRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPKMDEINSMLHQ 555
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/407 (25%), Positives = 168/407 (41%), Gaps = 107/407 (26%)
Query: 25 GFEPNNYTFPPLIKACVILGPLENF--GMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
G P+N+T P ++K+ +G L G VH + VK G D +V +SL+ Y+ + K+
Sbjct: 41 GLYPDNFTLPVVLKS---IGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKI 97
Query: 83 GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
+FD+ P RDVV+W ++ Y G FE+A +F++M
Sbjct: 98 EITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMS------------------ 139
Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
QE +K +E +VS L+AC+ L + G ++ + E +V +
Sbjct: 140 ------------QESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVT-EFEMSVRIGN 186
Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG------------------------ 238
A+VDM+ KCG + A +VF+ + +K+ W +M+ G
Sbjct: 187 ALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVVL 246
Query: 239 --VAMNGDAK-----KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL----NLF 287
MNG + ++LELF M +G +P V++LT C + G +
Sbjct: 247 WTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIN 306
Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEA-EKFIEEK---------------MGGLG 331
EN V V +VD+ A+ G +E A E F E K M G+
Sbjct: 307 ENRVTVDKVVG-----TALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMS 361
Query: 332 GG---------------DANVWGALLSACRIYGKIEVGNRVWRKLAE 363
G DA + A+L+AC G + G +++ + E
Sbjct: 362 GRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTE 408
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
F +VL+LF +++ G+ P+ L VL + L + +G VH YA + LE + ++ +
Sbjct: 27 FTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNS 86
Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK-SGTQP 262
++ MY+ G + VF+ + +D +WN +IS NG + ++ +F RM + S +
Sbjct: 87 LMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKF 146
Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
E T V+ L+ C+ K + G ++ + + + ++ + +VD+ + G +++A
Sbjct: 147 DEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGN--ALVDMFCKCGCLDKA 201
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 33/218 (15%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
M+ GY+Q N ++ + M G P+N+ L+ C G LE G ++H ++ +
Sbjct: 250 MMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQ-GKWIHGYINEN 308
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
D V ++L++ Y+ + TA +F + +RD +WT+++ G
Sbjct: 309 RVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAM----------- 357
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
N +S A L L+ +M+ VG++ + V+VLTAC H G +
Sbjct: 358 ------NGMSGRA--------------LDLYYEMENVGVRLDAITFVAVLTACNHGGFVA 397
Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSA 217
+G + HS +R++++ + ++D+ + G + A
Sbjct: 398 EGRKIFHSMTERHNVQPKSEHCSCLIDLLCRAGLLDEA 435
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 291 bits (744), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 164/507 (32%), Positives = 262/507 (51%), Gaps = 72/507 (14%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+IR + Q + P + F + +M G +N+T+P L+KAC L M +H H+ K
Sbjct: 88 LIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKM-MHNHIEKL 146
Query: 61 GFGEDPFVVSSLLEFYS------------LVHKMG---------------------TARA 87
G D +V ++L++ YS L KM AR
Sbjct: 147 GLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARR 206
Query: 88 LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD---- 143
LFD+ P RD+++W TM+DGY + + A ELFEKMPERN VSWS ++ YS+ D
Sbjct: 207 LFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMA 266
Query: 144 -----------------------------FKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
KE L QM G+K + + ++S+L AC
Sbjct: 267 RVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACT 326
Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
G ++ G+ +HS KR +L N + A++DMY+KCG++ A VF I KD +WN
Sbjct: 327 ESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNT 386
Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
M+ G+ ++G K+++ELF RM + G +P + TF+AVL +C HA ++ +G++ F +M VY
Sbjct: 387 MLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVY 446
Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
+ PQ+EHY C+VDLL R G ++EA K ++ + +WGALL ACR++ ++++
Sbjct: 447 DLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMP---MEPNVVIWGALLGACRMHNEVDIA 503
Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISETGMKKKPGCSVIEVNG 413
V L ++ D + L NIY A W+ A+ +R + G++K G S +E+
Sbjct: 504 KEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVAD-IRSKMKSMGVEKPSGASSVELED 562
Query: 414 VVEEFLAGDNRHAQAGEIYRVIHSFLK 440
+ EF D H ++ +IY+++ S ++
Sbjct: 563 GIHEFTVFDKSHPKSDQIYQMLGSLIE 589
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 120/272 (44%), Gaps = 34/272 (12%)
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
A +F ++ E N ++++ A+++ S + +F +MQ G+ + +L AC+
Sbjct: 70 AVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSG 129
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--HVHSALSVFEGISNKDAGAWN 233
+ +H++ ++ L ++ + A++D YS+CG V A+ +FE +S +D +WN
Sbjct: 130 QSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWN 189
Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
+M+ G+ G+ + + LFD M Q ++ +L + + LFE M
Sbjct: 190 SMLGGLVKAGELRDARRLFDEM----PQRDLISWNTMLDGYARCREMSKAFELFEKMPER 245
Query: 294 -----------YGVEPQLEHYACVVDLL-----------------ARAGMVEEAEKFIEE 325
Y +E + D + A G+++EA++ +++
Sbjct: 246 NTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQ 305
Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
+ DA ++L+AC G + +G R+
Sbjct: 306 MVASGLKFDAAAVISILAACTESGLLSLGMRI 337
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 148/433 (34%), Positives = 254/433 (58%), Gaps = 8/433 (1%)
Query: 7 QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP 66
+ N +++ Y + + +P+ +TFP ++K V + + FG +H VV FGF
Sbjct: 93 EPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVW-FGRQIHGQVVVFGFDSSV 151
Query: 67 FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP-- 124
VV+ L++ Y +G AR +FD+ +DV W ++ GYGK+G+ + AR L E MP
Sbjct: 152 HVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCW 211
Query: 125 ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184
RN VSW+ +++ Y++ E + +F++M ++P+E L++VL+ACA LG++ G
Sbjct: 212 VRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGER 271
Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
+ SY + + V L AV+DMY+K G++ AL VFE ++ ++ W +I+G+A +G
Sbjct: 272 ICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGH 331
Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
++L +F+RMVK+G +P + TF+A+L+ C+H V G LF +M + YG+ P +EHY
Sbjct: 332 GAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYG 391
Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
C++DLL RAG + EA++ I+ +A +WG+LL+A ++ +E+G R +L ++
Sbjct: 392 CMIDLLGRAGKLREADEVIKSMP---FKANAAIWGSLLAASNVHHDLELGERALSELIKL 448
Query: 365 GITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDN 423
+ ++L N+Y G WD E+ +R ++ G+KK G S IEV V +F++GD
Sbjct: 449 EPNNSGNYMLLANLYSNLGRWD-ESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDL 507
Query: 424 RHAQAGEIYRVIH 436
H Q I+ ++
Sbjct: 508 THPQVERIHEILQ 520
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 117/256 (45%), Gaps = 38/256 (14%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I GY ++ ++ + ML EP+ T ++ AC LG LE G + ++V
Sbjct: 221 VISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLE-LGERICSYVDHR 279
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G + +++++ Y+ + A +F+ +R+VVTWTT++ G G A
Sbjct: 280 GMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEA---- 335
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
L++F +M + G++PN+ +++L+AC+H+G +
Sbjct: 336 ---------------------------LAMFNRMVKAGVRPNDVTFIAILSACSHVGWVD 368
Query: 181 QGLWV-HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISG 238
G + +S +Y + N+ ++D+ + G + A V + + K +A W ++++
Sbjct: 369 LGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAA 428
Query: 239 VAMNGDAKKSLELFDR 254
++ D LEL +R
Sbjct: 429 SNVHHD----LELGER 440
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 286 bits (733), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 153/419 (36%), Positives = 246/419 (58%), Gaps = 11/419 (2%)
Query: 27 EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY-SLVHKMGTA 85
PN++ +P ++K+ L + + VH H+ K GF V ++LL Y S V + A
Sbjct: 123 RPNHFIYPLVLKSTPYLSSAFSTPL-VHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 86 RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
R LFD+ +R+VV+WT M+ GY + GD NA LFE MPER+ SW+AI+AA ++ F
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 146 EVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
E +SLFR+M E ++PNE +V VL+ACA G + +H++A R L +V ++ ++
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSSDVFVSNSL 301
Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVK---SGTQ 261
VD+Y KCG++ A SVF+ S K AWN+MI+ A++G +++++ +F+ M+K + +
Sbjct: 302 VDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNINDIK 361
Query: 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
P TF+ +L CTH +V G F+ M+ +G+EP++EHY C++DLL RAG +EA +
Sbjct: 362 PDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDEALE 421
Query: 322 FIEE-KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380
+ KM D +WG+LL+AC+I+G +++ + L + + + N+Y
Sbjct: 422 VMSTMKM----KADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYG 477
Query: 381 EAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFL 439
E G EA + RK+I K PG S IE++ V +F + D H + EIY ++ S +
Sbjct: 478 EMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILDSLI 536
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 248/434 (57%), Gaps = 9/434 (2%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKAC-VILGPLENFGMFVHAHVVKFGFGEDPFVV-SSLLEF 75
+ DM G EPN+ TF L+ C E G +H + K G + +V ++++
Sbjct: 59 FSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGM 118
Query: 76 YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
YS + AR +FD D++ VTW TM+DGY + G +NA ++F+KMPER+ +SW+A++
Sbjct: 119 YSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI 178
Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
+ + +E L FR+MQ G+KP+ +++ L AC +LGA++ GLWVH Y +
Sbjct: 179 NGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFK 238
Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
NV ++ +++D+Y +CG V A VF + + +WN++I G A NG+A +SL F +M
Sbjct: 239 NNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAANGNAHESLVYFRKM 298
Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
+ G +P TF LT C+H +V +GL F+ M Y + P++EHY C+VDL +RAG
Sbjct: 299 QEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGR 358
Query: 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDFSTHVL 374
+E+A K ++ + V G+LL+AC +G I + R+ + L ++ + S +V+
Sbjct: 359 LEDALKLVQSMP---MKPNEVVIGSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVI 415
Query: 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAG---EI 431
N+Y G A+K+R+ + G+KK+PG S IE++ + F+AGDN H + E+
Sbjct: 416 LSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREV 475
Query: 432 YRVIHSFLKMSNLV 445
+I S L++ V
Sbjct: 476 LELISSDLRLQGCV 489
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 98/228 (42%), Gaps = 35/228 (15%)
Query: 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL--GAITQGLWV 185
VSW++ + +R E F M G++PN +++L+ C G+ G +
Sbjct: 36 TVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDLL 95
Query: 186 HSYAKRYHLEKN-VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
H YA + L++N V++ TA++ MYSK G A VF+ + +K++ WN MI G +G
Sbjct: 96 HGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSGQ 155
Query: 245 AKKSLELFDRMVK-------------------------------SGTQPTETTFVAVLTT 273
+ ++FD+M + SG +P +A L
Sbjct: 156 VDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNA 215
Query: 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321
CT+ + GL + + + + + ++DL R G VE A +
Sbjct: 216 CTNLGALSFGLWVHRYVLS-QDFKNNVRVSNSLIDLYCRCGCVEFARQ 262
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
+W + I+ + NG ++ + F M +G +P TF+A+L+ C F +
Sbjct: 38 SWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGD----------FTSG 87
Query: 291 SAVYGVEPQLEHYACVVDL--------LARAGMVEEAEKFIEEKMGGLGGGDAN--VWGA 340
S G L YAC + L A GM + +F + ++ D N W
Sbjct: 88 SEALG--DLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNT 145
Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
++ G+++ +++ K+ E + ++ + N + + G+ EA
Sbjct: 146 MIDGYMRSGQVDNAAKMFDKMPERDLISWTAMI---NGFVKKGYQEEA 190
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 232/390 (59%), Gaps = 6/390 (1%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVIL--GPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
+++M P+ +TFP + KAC G L +H ++FG D F +++L+
Sbjct: 103 FVEMRRRSVPPDFHTFPFVFKACAAKKNGDL-TLVKTLHCQALRFGLLSDLFTLNTLIRV 161
Query: 76 YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
YSL+ + +A LFD++P RDVVT+ ++DG K + ARELF+ MP R+ VSW++++
Sbjct: 162 YSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLI 221
Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE 195
+ Y++++ +E + LF +M +G+KP+ +VS L+ACA G +G +H Y KR L
Sbjct: 222 SGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLF 281
Query: 196 KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
+ LAT +VD Y+KCG + +A+ +FE S+K WNAMI+G+AM+G+ + +++ F +M
Sbjct: 282 IDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKM 341
Query: 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315
V SG +P TF++VL C+H+ +V + NLF+ M ++Y V +++HY C+ DLL RAG+
Sbjct: 342 VSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGL 401
Query: 316 VEEAEKFIEEKMGGLGGGDANV--WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
+EEA + IE+ M GG + W LL CRI+G IE+ + ++ + D +
Sbjct: 402 IEEAAEMIEQ-MPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYK 460
Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKK 403
+ +Y A E KVR++I KK
Sbjct: 461 VMVEMYANAERWEEVVKVREIIDRDKKVKK 490
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 105/251 (41%), Gaps = 40/251 (15%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I GY Q N + ++ + +M+ +G +P+N + AC G + G +H + +
Sbjct: 220 LISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQK-GKAIHDYTKRK 278
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
D F+ + L++FY+ + TA +F+ D+ + TW M+ G G+ E
Sbjct: 279 RLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGE------ 332
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ FR+M G+KP+ +SVL C+H G +
Sbjct: 333 -------------------------LTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVD 367
Query: 181 QGLWVHSYAKR-YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG------AWN 233
+ + + Y + + + + D+ + G + A + E + KD G AW+
Sbjct: 368 EARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMP-KDGGNREKLLAWS 426
Query: 234 AMISGVAMNGD 244
++ G ++G+
Sbjct: 427 GLLGGCRIHGN 437
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/434 (36%), Positives = 240/434 (55%), Gaps = 37/434 (8%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI GY + K ++ + DM+ P+ T ++ AC G +E G VH +
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE-LGRQVHLWIDDH 295
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GFG + +V++L++ YS K G+ E A LF
Sbjct: 296 GFGSNLKIVNALIDLYS-------------------------------KCGELETACGLF 324
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
E++P ++ +SW+ ++ Y+ ++ +KE L LF++M G PN+ ++S+L ACAHLGAI
Sbjct: 325 ERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 384
Query: 181 QGLWVHSYA-KRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
G W+H Y KR N L T+++DMY+KCG + +A VF I +K +WNAMI G
Sbjct: 385 IGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFG 444
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
AM+G A S +LF RM K G QP + TFV +L+ C+H+ M+ G ++F M+ Y + P
Sbjct: 445 FAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTP 504
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
+LEHY C++DLL +G+ +EAE+ I D +W +LL AC+++G +E+G
Sbjct: 505 KLEHYGCMIDLLGHSGLFKEAEEMINMME---MEPDGVIWCSLLKACKMHGNVELGESFA 561
Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
L ++ + ++VL NIY AG E K R L+++ GMKK PGCS IE++ VV EF
Sbjct: 562 ENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEF 621
Query: 419 LAGDNRHAQAGEIY 432
+ GD H + EIY
Sbjct: 622 IIGDKFHPRNREIY 635
Score = 218 bits (555), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 209/368 (56%), Gaps = 8/368 (2%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
M RG+ ++ P ++ Y+ M+ +G PN+YTFP ++K+C + G +H HV+K
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKE-GQQIHGHVLKL 163
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G D +V +SL+ Y ++ A +FDKSP RDVV++T ++ GY G ENA++LF
Sbjct: 164 GCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLF 223
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+++P ++ VSW+A+++ Y+ ++KE L LF+ M + ++P+ES +V+V++ACA G+I
Sbjct: 224 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 283
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G VH + + N+ + A++D+YSKCG + +A +FE + KD +WN +I G
Sbjct: 284 LGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYT 343
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG--LNLFENMSAVYGVEP 298
K++L LF M++SG P + T +++L C H + G ++++ + + GV
Sbjct: 344 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID-KRLKGVTN 402
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
++D+ A+ G +E A + + + W A++ ++G+ + ++
Sbjct: 403 ASSLRTSLIDMYAKCGDIEAAHQVFNSIL----HKSLSSWNAMIFGFAMHGRADASFDLF 458
Query: 359 RKLAEMGI 366
++ ++GI
Sbjct: 459 SRMRKIGI 466
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 68/344 (19%)
Query: 30 NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89
N+ L+ C L L +HA ++K G + +S L+EF L
Sbjct: 33 NHPSLSLLHNCKTLQSLR----IIHAQMIKIGLHNTNYALSKLIEFCIL----------- 77
Query: 90 DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
SP + + + A +F+ + E N + W+ + ++ SD L
Sbjct: 78 --SPHFEGLPY---------------AISVFKTIQEPNLLIWNTMFRGHALSSDPVSALK 120
Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQG---------------LWVHS-----YA 189
L+ M +G+ PN VL +CA A +G L+VH+ Y
Sbjct: 121 LYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYV 180
Query: 190 KRYHLE-----------KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
+ LE ++V+ TA++ Y+ G++ +A +F+ I KD +WNAMISG
Sbjct: 181 QNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISG 240
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
A G+ K++LELF M+K+ +P E+T V V++ C + + G + + +G
Sbjct: 241 YAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD-HGFGS 299
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
L+ ++DL ++ G +E A E L D W L+
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFER----LPYKDVISWNTLI 339
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 251/432 (58%), Gaps = 5/432 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
M Y++ + ++ + M+D G P+ + I +C L + +G H +V++
Sbjct: 308 MASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNIL-WGKSCHGYVLRN 366
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF + ++L++ Y H+ TA +FD+ ++ VVTW ++V GY + G+ + A E F
Sbjct: 367 GFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETF 426
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
E MPE+N VSW+ I++ + S F+E + +F MQ + G+ + ++S+ +AC HLGA+
Sbjct: 427 ETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 486
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
W++ Y ++ ++ +V L T +VDM+S+CG SA+S+F ++N+D AW A I +
Sbjct: 487 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 546
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
AM G+A++++ELFD M++ G +P FV LT C+H +V+ G +F +M ++GV P+
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 606
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
HY C+VDLL RAG++EEA + IE+ + D +W +LL+ACR+ G +E+
Sbjct: 607 DVHYGCMVDLLGRAGLLEEAVQLIEDM--PMEPNDV-IWNSLLAACRVQGNVEMAAYAAE 663
Query: 360 KLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
K+ + ++VL N+Y AG + KVR + E G++K PG S I++ G EF
Sbjct: 664 KIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFT 723
Query: 420 AGDNRHAQAGEI 431
+GD H + I
Sbjct: 724 SGDESHPEMPNI 735
Score = 141 bits (356), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 154/302 (50%), Gaps = 44/302 (14%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+IRGY + ++ +L M++ G P+ YTFP + AC N G+ +H +VK
Sbjct: 105 LIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGN-GIQIHGLIVKM 163
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+ +D FV +SL+ FY+ + G+ ++AR++F
Sbjct: 164 GYAKDLFVQNSLVHFYA-------------------------------ECGELDSARKVF 192
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLF-RQMQEVGMKPNESGLVSVLTACAHLGAI 179
++M ERN VSW++++ Y+R K+ + LF R +++ + PN +V V++ACA L +
Sbjct: 193 DEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDL 252
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G V+++ + +E N ++ +A+VDMY KC + A +F+ + NAM S
Sbjct: 253 ETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNY 312
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-----------HAKMVRDGLNLFE 288
G +++L +F+ M+ SG +P + ++ +++C+ H ++R+G ++
Sbjct: 313 VRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWD 372
Query: 289 NM 290
N+
Sbjct: 373 NI 374
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/297 (24%), Positives = 131/297 (44%), Gaps = 37/297 (12%)
Query: 1 MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
MI GY + +F K +V + M+ D PN+ T +I AC L LE G V+A +
Sbjct: 206 MICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET-GEKVYAFIRN 264
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
G + +VS+L VD Y K + A+ L
Sbjct: 265 SGIEVNDLMVSAL-------------------------------VDMYMKCNAIDVAKRL 293
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F++ N +A+ + Y R +E L +F M + G++P+ ++S +++C+ L I
Sbjct: 294 FDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNI 353
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G H Y R E + A++DMY KC +A +F+ +SNK WN++++G
Sbjct: 354 LWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 413
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
NG+ + E F+ M + ++ +++ + + + +F +M + GV
Sbjct: 414 VENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGV 466
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 120/245 (48%), Gaps = 6/245 (2%)
Query: 86 RALFDKSPDRDVVTWTTMVDGYGKMGDFEN---ARELFEKMPERNAV-SWSAIMAAYSRI 141
R+L + D DV T T +V ++G E+ A+E+FE +++++ Y+
Sbjct: 53 RSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASS 112
Query: 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201
E + LF +M G+ P++ L+ACA A G+ +H + K++ +
Sbjct: 113 GLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQ 172
Query: 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GT 260
++V Y++CG + SA VF+ +S ++ +W +MI G A AK +++LF RMV+
Sbjct: 173 NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEV 232
Query: 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320
P T V V++ C + + G ++ + G+E + +VD+ + ++ A+
Sbjct: 233 TPNSVTMVCVISACAKLEDLETGEKVYAFIRN-SGIEVNDLMVSALVDMYMKCNAIDVAK 291
Query: 321 KFIEE 325
+ +E
Sbjct: 292 RLFDE 296
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 277 bits (708), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/431 (35%), Positives = 241/431 (55%), Gaps = 39/431 (9%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+IR Y ++ P++++ + +ML P+ Y+F ++KAC E G +H +K
Sbjct: 111 VIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEE-GRQIHGLFIKS 169
Query: 61 GFGEDPFVVSSLLEFY----------SLVHKMGT---------------------ARALF 89
G D FV ++L+ Y ++ +M ARALF
Sbjct: 170 GLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALF 229
Query: 90 DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
D+ +R+V +W M+ GY G + A+E+F+ MP R+ VSW+A++ AY+ + + EVL
Sbjct: 230 DEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLE 289
Query: 150 LFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
+F +M + KP+ LVSVL+ACA LG+++QG WVH Y ++ +E LATA+VDMY
Sbjct: 290 VFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMY 349
Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
SKCG + AL VF S +D WN++IS ++++G K +LE+F MV G +P TF+
Sbjct: 350 SKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFI 409
Query: 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328
VL+ C H M+ LFE MS+VY VEP +EHY C+VDLL R G +EEAE+ + E
Sbjct: 410 GVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNE--- 466
Query: 329 GLGGGDANV-WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDM 386
+ +A++ +LL AC+ +G++E R+ +L E+ + D S + N+Y G W+
Sbjct: 467 -IPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGRWEK 525
Query: 387 EANKVRKLISE 397
+ R + +E
Sbjct: 526 VIDGRRNMRAE 536
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 105/237 (44%), Gaps = 32/237 (13%)
Query: 54 HAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDF 113
HA ++K G D F S L+ F + +P+ V++
Sbjct: 59 HAFMLKTGLFHDTFSASKLVAFAA-------------TNPEPKTVSY------------- 92
Query: 114 ENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173
A + ++ N + ++++ AY+ S + L++FR+M + P++ VL AC
Sbjct: 93 --AHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKAC 150
Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
A +G +H + L +V + +V++Y + G+ A V + + +DA +WN
Sbjct: 151 AAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWN 210
Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
+++S G ++ LFD M + + ++ +++ A +V++ +F++M
Sbjct: 211 SLLSAYLEKGLVDEARALFDEMEERNVE----SWNFMISGYAAAGLVKEAKEVFDSM 263
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/477 (32%), Positives = 243/477 (50%), Gaps = 41/477 (8%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MIR Y+ F V + M P++YTFP ++KAC G + G +H K
Sbjct: 111 MIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV-IGRKIHGSATKV 169
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA---- 116
G FV + L+ Y + AR + D+ RDVV+W ++V GY + F++A
Sbjct: 170 GLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVC 229
Query: 117 ---------------------------------RELFEKMPERNAVSWSAIMAAYSRISD 143
+++F KM +++ VSW+ ++ Y + +
Sbjct: 230 REMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAM 289
Query: 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203
E + L+ +M+ G +P+ + SVL AC A++ G +H Y +R L N++L A
Sbjct: 290 PVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENA 349
Query: 204 VVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263
++DMY+KCG + A VFE + ++D +W AMIS +G ++ LF ++ SG P
Sbjct: 350 LIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPD 409
Query: 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323
FV L C+HA ++ +G + F+ M+ Y + P+LEH AC+VDLL RAG V+EA +FI
Sbjct: 410 SIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFI 469
Query: 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383
++ + VWGALL ACR++ ++G KL ++ +VL NIY +AG
Sbjct: 470 QDMS---MEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAG 526
Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLK 440
E +R ++ G+KK PG S +EVN ++ FL GD H Q+ EIYR + +K
Sbjct: 527 RWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVK 583
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 78/153 (50%)
Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
++ Y + D +AR++F+++PERN + + ++ +Y + E + +F M ++P+
Sbjct: 80 LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPD 139
Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
VL AC+ G I G +H A + L + + +V MY KCG + A V +
Sbjct: 140 HYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 199
Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
+S +D +WN+++ G A N +LE+ M
Sbjct: 200 EMSRRDVVSWNSLVVGYAQNQRFDDALEVCREM 232
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 5/158 (3%)
Query: 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
VHS L N L ++ Y+ V SA VF+ I ++ N MI NG
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
+ +++F M +P TF VL C+ + + G + + + V G+ L
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKV-GLSSTLFVGN 179
Query: 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
+V + + G + EA ++E + D W +L+
Sbjct: 180 GLVSMYGKCGFLSEARLVLDE----MSRRDVVSWNSLV 213
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 150/441 (34%), Positives = 241/441 (54%), Gaps = 35/441 (7%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I+ + P V Y ML P+NYTF +IK+C L L G VH H V
Sbjct: 78 VIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALR-IGKGVHCHAVVS 136
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GFG D +V ++L+ FYS K GD E AR++F
Sbjct: 137 GFGLDTYVQAALVTFYS-------------------------------KCGDMEGARQVF 165
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++MPE++ V+W+++++ + + E + +F QM+E G +P+ + VS+L+ACA GA++
Sbjct: 166 DRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVS 225
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G WVH Y L+ NV L TA++++YS+CG V A VF+ + + AW AMIS
Sbjct: 226 LGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYG 285
Query: 241 MNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
+G ++++ELF++M G P TFVAVL+ C HA +V +G ++++ M+ Y + P
Sbjct: 286 THGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPG 345
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA-NVWGALLSACRIYGKIEVGNRVW 358
+EH+ C+VD+L RAG ++EA KFI + + G A +W A+L AC+++ ++G +
Sbjct: 346 VEHHVCMVDMLGRAGFLDEAYKFIHQ-LDATGKATAPALWTAMLGACKMHRNYDLGVEIA 404
Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
++L + + HV+ NIY +G E + +R + ++K+ G SVIEV F
Sbjct: 405 KRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMF 464
Query: 419 LAGDNRHAQAGEIYRVIHSFL 439
GD H + GEIYR + + +
Sbjct: 465 SMGDESHQETGEIYRYLETLI 485
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 93/410 (22%), Positives = 175/410 (42%), Gaps = 68/410 (16%)
Query: 29 NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88
N+ + +++A GP VHAH++ G+G +++ L+ +ARA
Sbjct: 8 NSAAYEAIVRA----GPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLAC------SARA- 56
Query: 89 FDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148
+ +T + LF +P + +++++ + S++ +
Sbjct: 57 ---------IAYTHL---------------LFLSVPLPDDFLFNSVIKSTSKLRLPLHCV 92
Query: 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208
+ +R+M + P+ SV+ +CA L A+ G VH +A + + A+V Y
Sbjct: 93 AYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFY 152
Query: 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268
SKCG + A VF+ + K AWN+++SG NG A +++++F +M +SG +P TFV
Sbjct: 153 SKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFV 212
Query: 269 AVLTTC-----------THAKMVRDGLNL-------FENMSAVYG------------VEP 298
++L+ C H ++ +GL+L N+ + G E
Sbjct: 213 SLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKET 272
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKIEVGNRV 357
+ + ++ G ++A + + G NV + A+LSAC G +E G V
Sbjct: 273 NVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSV 332
Query: 358 WRKLAEMG--ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405
++++ + I HV ++ AG+ EA K + TG P
Sbjct: 333 YKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPA 382
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 274 bits (701), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 151/442 (34%), Positives = 246/442 (55%), Gaps = 9/442 (2%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
M+ GY Q +++ Y + G + N ++F L+ ACV L+ H V+
Sbjct: 150 MVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQ-LNRQAHGQVLVA 208
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF + + S+++ Y+ +M +A+ FD+ +D+ WTT++ GY K+GD E A +LF
Sbjct: 209 GFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLF 268
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+MPE+N VSW+A++A Y R L LFR+M +G+KP + S L A A + ++
Sbjct: 269 CEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLR 328
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-DAGAWNAMISGV 239
G +H Y R ++ N I+ ++++DMYSK G + ++ VF +K D WN MIS +
Sbjct: 329 HGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISAL 388
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
A +G K+L + D M+K QP TT V +L C+H+ +V +GL FE+M+ +G+ P
Sbjct: 389 AQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPD 448
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
EHYAC++DLL RAG +E + IEE D ++W A+L CRI+G E+G +
Sbjct: 449 QEHYACLIDLLGRAGCFKELMRKIEEMP---FEPDKHIWNAILGVCRIHGNEELGKKAAD 505
Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
+L ++ + ++L +IY + G W++ K+R ++ + + K+ S IE+ VE F
Sbjct: 506 ELIKLDPESSAPYILLSSIYADHGKWEL-VEKLRGVMKKRRVNKEKAVSWIEIEKKVEAF 564
Query: 419 LAGDNRHAQAG--EIYRVIHSF 438
D HA A EIY ++H+
Sbjct: 565 TVSDGSHAHARKEEIYFILHNL 586
Score = 129 bits (323), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 158/350 (45%), Gaps = 45/350 (12%)
Query: 50 GMFVHAHVVKFGFGEDPFVVSS-LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG 108
G ++H H+ GF ++S+ L+ Y K A +FD+ R++ +W MV GY
Sbjct: 65 GKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYV 124
Query: 109 KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVS 168
K G AR +F+ MPER+ VSW+ ++ Y++ + E L +++ + G+K NE
Sbjct: 125 KSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAG 184
Query: 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
+LTAC + H NV+L+ +++D Y+KCG + SA F+ ++ KD
Sbjct: 185 LLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKD 244
Query: 229 AGAWNAMISGVAMNGD-------------------------------AKKSLELFDRMVK 257
W +ISG A GD ++L+LF +M+
Sbjct: 245 IHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIA 304
Query: 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
G +P + TF + L +R G + M V P + ++D+ +++G +E
Sbjct: 305 LGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRT-NVRPNAIVISSLIDMYSKSGSLE 363
Query: 318 EAE---KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364
+E + ++K D W ++SA +G +G++ R L +M
Sbjct: 364 ASERVFRICDDK------HDCVFWNTMISALAQHG---LGHKALRMLDDM 404
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 242/432 (56%), Gaps = 4/432 (0%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI GY + + S+ ++M P + T ++ AC + ++ VH +V +
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD-KDLCKRVHEYVSEC 265
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
+ ++L+ Y+ +M A +F RDV++WT++V GY + G+ + AR F
Sbjct: 266 KTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYF 325
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++MP R+ +SW+ ++ Y R F E L +FR+MQ GM P+E +VSVLTACAHLG++
Sbjct: 326 DQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLE 385
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G W+ +Y + ++ +V++ A++DMY KCG A VF + +D W AM+ G+A
Sbjct: 386 IGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLA 445
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
NG ++++++F +M QP + T++ VL+ C H+ MV F M + + +EP L
Sbjct: 446 NNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSL 505
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
HY C+VD+L RAG+V+EA + + KM ++ VWGALL A R++ + +K
Sbjct: 506 VHYGCMVDMLGRAGLVKEAYEIL-RKMP--MNPNSIVWGALLGASRLHNDEPMAELAAKK 562
Query: 361 LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLA 420
+ E+ + + + L NIY + +VR+ I + +KK PG S+IEVNG EF+A
Sbjct: 563 ILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVA 622
Query: 421 GDNRHAQAGEIY 432
GD H Q+ EIY
Sbjct: 623 GDKSHLQSEEIY 634
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 183/378 (48%), Gaps = 29/378 (7%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI+G+ + + V YL+ML G P+++TFP L+ G G +H HVVKF
Sbjct: 105 MIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKF 164
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G G + +V ++L++ YSL M AR +FD+ DV +W M+ GY +M ++E + EL
Sbjct: 165 GLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELL 224
Query: 121 EKMPERNAVSWSA-----IMAAYSRISDFKEVLSLFRQMQEVGMKPN---ESGLVSVLTA 172
+M ERN VS ++ +++A S++ D + + E +P+ E+ LV+ A
Sbjct: 225 VEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAA 283
Query: 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAW 232
C + + R ++VI T++V Y + G++ A + F+ + +D +W
Sbjct: 284 CGEMDIAVRIF-------RSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336
Query: 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292
MI G G +SLE+F M +G P E T V+VLT C H + G
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-----EWIK 391
Query: 293 VYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348
Y + ++++ V +D+ + G E+A+K + + D W A++
Sbjct: 392 TYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHD----MDQRDKFTWTAMVVGLANN 447
Query: 349 GKIEVGNRVWRKLAEMGI 366
G+ + +V+ ++ +M I
Sbjct: 448 GQGQEAIKVFFQMQDMSI 465
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 133/296 (44%), Gaps = 19/296 (6%)
Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
G A +LF K+PE + V W+ ++ +S++ E + L+ M + G+ P+ +L
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLL 141
Query: 171 TACAHL-GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
GA+ G +H + ++ L N+ + A+V MYS CG + A VF+ +D
Sbjct: 142 NGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201
Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289
+WN MISG + ++S+EL M ++ PT T + VL+ C+ K +D
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVK-DKDLCKRVHE 260
Query: 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
+ EP L +V+ A G ++ A + + D W ++ + G
Sbjct: 261 YVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR----SMKARDVISWTSI-----VKG 311
Query: 350 KIEVGNRVWRKLA-----EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
+E GN KLA +M + D + + + Y AG E+ ++ + + GM
Sbjct: 312 YVERGN---LKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGM 364
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 269 bits (687), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 247/442 (55%), Gaps = 39/442 (8%)
Query: 1 MIRGYMQANFPKLSVFC-YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
M RGY + P L VF ++++L+ G P+NYTFP L+KAC + LE G +H +K
Sbjct: 100 MARGYSRFTNP-LEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEE-GRQLHCLSMK 157
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
G D +V T+++ Y + D ++AR +
Sbjct: 158 LGL-------------------------------DDNVYVCPTLINMYTECEDVDSARCV 186
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F+++ E V ++A++ Y+R + E LSLFR+MQ +KPNE L+SVL++CA LG++
Sbjct: 187 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSL 246
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G W+H YAK++ K V + TA++DM++KCG + A+S+FE + KD AW+AMI
Sbjct: 247 DLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAY 306
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
A +G A+KS+ +F+RM QP E TF+ +L C+H V +G F M + +G+ P
Sbjct: 307 ANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPS 366
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
++HY +VDLL+RAG +E+A +FI++ +W LL+AC + +++ +V
Sbjct: 367 IKHYGSMVDLLSRAGNLEDAYEFIDKLP---ISPTPMLWRILLAACSSHNNLDLAEKVSE 423
Query: 360 KLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
++ E+ + +V+ N+Y + W+ + +RK++ + K PGCS IEVN VV EF
Sbjct: 424 RIFELDDSHGGDYVILSNLYARNKKWEY-VDSLRKVMKDRKAVKVPGCSSIEVNNVVHEF 482
Query: 419 LAGDNRHAQAGEIYRVIHSFLK 440
+GD + +++R + +K
Sbjct: 483 FSGDGVKSATTKLHRALDEMVK 504
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 5/237 (2%)
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
AR LFE M E + V ++++ YSR ++ EV SLF ++ E G+ P+ S+L ACA
Sbjct: 82 ARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV 141
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
A+ +G +H + + L+ NV + +++MY++C V SA VF+ I +NAM
Sbjct: 142 AKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAM 201
Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
I+G A ++L LF M +P E T ++VL++C + G + +
Sbjct: 202 ITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLG-KWIHKYAKKHS 260
Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352
++ ++D+ A+ G +++A E+ + D W A++ A +GK E
Sbjct: 261 FCKYVKVNTALIDMFAKCGSLDDAVSIFEK----MRYKDTQAWSAMIVAYANHGKAE 313
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 269 bits (687), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 234/422 (55%), Gaps = 11/422 (2%)
Query: 21 MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFYSLV 79
ML+ EP+ T +I AC L ++ G VH VVK D + ++ ++ Y+
Sbjct: 244 MLESRVEPDEVTLASVISACASLSAIK-VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKC 302
Query: 80 HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
++ AR +FD P R+V+ T+M+ GY + AR +F KM ERN VSW+A++A Y+
Sbjct: 303 SRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYT 362
Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL----- 194
+ + +E LSLF ++ + P ++L ACA L + G+ H + ++
Sbjct: 363 QNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSG 422
Query: 195 -EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFD 253
E ++ + +++DMY KCG V VF + +D +WNAMI G A NG ++LELF
Sbjct: 423 EEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFR 482
Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313
M++SG +P T + VL+ C HA V +G + F +M+ +GV P +HY C+VDLL RA
Sbjct: 483 EMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRA 542
Query: 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373
G +EEA+ IEE D+ +WG+LL+AC+++ I +G V KL E+ ++ +V
Sbjct: 543 GFLEEAKSMIEEMP---MQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYV 599
Query: 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYR 433
L N+Y E G + VRK + + G+ K+PGCS I++ G F+ D H + +I+
Sbjct: 600 LLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHS 659
Query: 434 VI 435
++
Sbjct: 660 LL 661
Score = 175 bits (443), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 167/305 (54%), Gaps = 1/305 (0%)
Query: 23 DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
D+ ++ F L+ +C+ + +VHA V+K GF + F+ + L++ YS +
Sbjct: 12 DLSSFTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSL 71
Query: 83 GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
R +FDK P R++ TW ++V G K+G + A LF MPER+ +W+++++ +++
Sbjct: 72 EDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHD 131
Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
+E L F M + G NE SVL+AC+ L + +G+ VHS + +V + +
Sbjct: 132 RCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGS 191
Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
A+VDMYSKCG+V+ A VF+ + +++ +WN++I+ NG A ++L++F M++S +P
Sbjct: 192 ALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEP 251
Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322
E T +V++ C ++ G + + + + VD+ A+ ++EA +F
Sbjct: 252 DEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA-RF 310
Query: 323 IEEKM 327
I + M
Sbjct: 311 IFDSM 315
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 156/356 (43%), Gaps = 71/356 (19%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
M+ G+ Q + + CY M+ GF N Y+F ++ AC L + N G+ VH+ + K
Sbjct: 123 MVSGFAQHDRCE-EALCYFAMMHKEGFVLNEYSFASVLSACSGLNDM-NKGVQVHSLIAK 180
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
F D ++ S+L++ YS + A+ +FD+ DR+VV+W +++ + + G
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGP------- 233
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
AV E L +F+ M E ++P+E L SV++ACA L AI
Sbjct: 234 --------AV----------------EALDVFQMMLESRVEPDEVTLASVISACASLSAI 269
Query: 180 TQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG--------------- 223
G VH K L ++IL+ A VDMY+KC + A +F+
Sbjct: 270 KVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISG 329
Query: 224 ----------------ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267
++ ++ +WNA+I+G NG+ +++L LF + + PT +F
Sbjct: 330 YAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSF 389
Query: 268 VAVLTTCTHAKMVRDGLN-----LFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318
+L C + G+ L G E + ++D+ + G VEE
Sbjct: 390 ANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEE 445
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 32/138 (23%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI G+ Q + ++ + +ML+ G +P++ T ++ AC
Sbjct: 464 MIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSAC-------------------- 503
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G FV F S+ G A P RD +T MVD G+ G E A+ +
Sbjct: 504 --GHAGFVEEGRHYFSSMTRDFGVA-------PLRD--HYTCMVDLLGRAGFLEEAKSMI 552
Query: 121 EKMP-ERNAVSWSAIMAA 137
E+MP + ++V W +++AA
Sbjct: 553 EEMPMQPDSVIWGSLLAA 570
>sp|Q9SR01|PP212_ARATH Pentatricopeptide repeat-containing protein At3g04750,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E81 PE=2
SV=1
Length = 661
Score = 267 bits (683), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/441 (34%), Positives = 248/441 (56%), Gaps = 8/441 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI GY + F ++ Y M+ G EP+ YT L+ C L + G VH + +
Sbjct: 203 MIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIR-LGKGVHGWIERR 261
Query: 61 G--FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARE 118
G + + + ++LL+ Y + G A+ FD +D+ +W TMV G+ ++GD E A+
Sbjct: 262 GPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQA 321
Query: 119 LFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHL 176
+F++MP+R+ VSW++++ YS+ D + V LF +M V +KP+ +VS+++ A+
Sbjct: 322 VFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANN 381
Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
G ++ G WVH R L+ + L++A++DMY KCG + A VF+ + KD W +MI
Sbjct: 382 GELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMI 441
Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
+G+A +G+ +++L+LF RM + G P T +AVLT C+H+ +V +GL++F +M +G
Sbjct: 442 TGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGF 501
Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
+P+ EHY +VDLL RAG VEEA+ +++KM ++WG++LSACR IE
Sbjct: 502 DPETEHYGSLVDLLCRAGRVEEAKDIVQKKMP--MRPSQSMWGSILSACRGGEDIETAEL 559
Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPG-CSVIEVNGVV 415
+L ++ +VL NIY G ++K R+ + G+KK G SV+ V G+
Sbjct: 560 ALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLH 619
Query: 416 EEFLAGDNRHAQAGEIYRVIH 436
A H + EI R++
Sbjct: 620 RFVAAEKQNHPRWTEIKRILQ 640
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 141/313 (45%), Gaps = 44/313 (14%)
Query: 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159
W ++V Y ++G+F A ++F +MP + S++ ++ Y++ E L L+ +M G+
Sbjct: 169 WNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGI 228
Query: 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSA 217
+P+E ++S+L C HL I G VH + +R N+IL+ A++DMY KC A
Sbjct: 229 EPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLA 288
Query: 218 LSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277
F+ + KD +WN M+ G GD + + +FD+M K +
Sbjct: 289 KRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQ 348
Query: 278 KMVRDGLNLFENMSAVYGVEP----------------QLEH------------------- 302
+ VR+ LF M+ V V+P +L H
Sbjct: 349 RTVRE---LFYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFL 405
Query: 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362
+ ++D+ + G++E A F+ K D +W ++++ +G + +++ ++
Sbjct: 406 SSALIDMYCKCGIIERA--FMVFKTA--TEKDVALWTSMITGLAFHGNGQQALQLFGRMQ 461
Query: 363 EMGITDFSTHVLS 375
E G+T + +L+
Sbjct: 462 EEGVTPNNVTLLA 474
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/361 (21%), Positives = 151/361 (41%), Gaps = 60/361 (16%)
Query: 53 VHAHVVKFGFGEDPFVVSSLLEFYSLVH--KMGTARALF-DKSPDRDVVTWTTMVDGYGK 109
V A +++F D F +S L+ F ++ + + A+ LF + +P+ +V + TM+
Sbjct: 53 VLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMI----- 107
Query: 110 MGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169
+AVS S E L+ M + P+ + +
Sbjct: 108 -----------------SAVS-----------SSKNECFGLYSSMIRHRVSPDRQTFLYL 139
Query: 170 LTACAHLGAITQGLWVHSYA-KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228
+ A + L + Q +H + L L ++V Y + G+ A VF + + D
Sbjct: 140 MKASSFLSEVKQ---IHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPD 196
Query: 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL-- 286
++N MI G A G + ++L+L+ +MV G +P E T +++L C H +R G +
Sbjct: 197 VSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHG 256
Query: 287 -FENMSAVYGVEPQLEHYACVVDLLAR---AGMVEEAEKFIEEKMGGLGGGDANVWGALL 342
E VY L + ++D+ + +G+ + A +++K D W ++
Sbjct: 257 WIERRGPVYSSNLILSN--ALLDMYFKCKESGLAKRAFDAMKKK-------DMRSWNTMV 307
Query: 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402
G +E V+ ++ + + +++ + Y+ + G D VR+L E + +
Sbjct: 308 VGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYS---KKGCDQRT--VRELFYEMTIVE 362
Query: 403 K 403
K
Sbjct: 363 K 363
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 267 bits (682), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/439 (33%), Positives = 244/439 (55%), Gaps = 38/439 (8%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MIRGY+ + ++ Y +M+ G EP+N+T+P L+KAC L + G +H V K
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIRE-GKQIHGQVFKL 161
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G D FV +SL ++ YG+ G+ E + +F
Sbjct: 162 GLEADVFVQNSL-------------------------------INMYGRCGEMELSSAVF 190
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAI 179
EK+ + A SWS++++A + + + E L LFR M E +K ESG+VS L ACA+ GA+
Sbjct: 191 EKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGAL 250
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G+ +H + R E N+I+ T++VDMY KCG + AL +F+ + ++ ++AMISG+
Sbjct: 251 NLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGL 310
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ 299
A++G+ + +L +F +M+K G +P +V+VL C+H+ +V++G +F M VEP
Sbjct: 311 ALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPT 370
Query: 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359
EHY C+VDLL RAG++EEA + I+ + D +W LS CR+ IE+G +
Sbjct: 371 AEHYGCLVDLLGRAGLLEEALETIQSI--PIEKNDV-IWRTFLSQCRVRQNIELGQIAAQ 427
Query: 360 KLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
+L ++ + ++L N+Y + WD + + R I+ G+K+ PG S++E+ G F
Sbjct: 428 ELLKLSSHNPGDYLLISNLYSQGQMWD-DVARTRTEIAIKGLKQTPGFSIVELKGKTHRF 486
Query: 419 LAGDNRHAQAGEIYRVIHS 437
++ D H + EIY+++H
Sbjct: 487 VSQDRSHPKCKEIYKMLHQ 505
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 134/284 (47%), Gaps = 19/284 (6%)
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
A +F + + ++ ++ Y + F+E L + +M + G +P+ +L AC
Sbjct: 85 AASIFRGIDDPCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTR 144
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
L +I +G +H + LE +V + ++++MY +CG + + +VFE + +K A +W++M
Sbjct: 145 LKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSM 204
Query: 236 ISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLN----LFENM 290
+S A G + L LF M ++ + E+ V+ L C + + G++ L N+
Sbjct: 205 VSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNI 264
Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE--EKMGGLGGGDANVWGALLSACRIY 348
S E + +VD+ + G +++A + EK L + A++S ++
Sbjct: 265 S-----ELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL------TYSAMISGLALH 313
Query: 349 GKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKV 391
G+ E R++ K+ + G+ D +V N +G E +V
Sbjct: 314 GEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRV 357
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 233/412 (56%), Gaps = 6/412 (1%)
Query: 26 FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85
P+++ F L+KAC LG +++ G VH H + + D V SSL++ Y+ + +A
Sbjct: 101 LRPDDFVFSALVKACANLGSIDH-GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSA 159
Query: 86 RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
+A+FD ++ ++WT MV GY K G E A ELF +P +N SW+A+++ + +
Sbjct: 160 KAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGL 219
Query: 146 EVLSLFRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAV 204
E S+F +M+ + + L S++ ACA+L A G VH + V ++ A+
Sbjct: 220 EAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNAL 279
Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
+DMY+KC V +A +F + ++D +W ++I G+A +G A+K+L L+D MV G +P E
Sbjct: 280 IDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNE 339
Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
TFV ++ C+H V G LF++M+ YG+ P L+HY C++DLL R+G+++EAE I
Sbjct: 340 VTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIH 399
Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL-AEMGITDFSTHVLSYNIYKEAG 383
D W ALLSAC+ G+ ++G R+ L + + D ST++L NIY A
Sbjct: 400 TMP---FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASAS 456
Query: 384 WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435
+ ++ R+ + E ++K PG S +EV E F AG+ H +I+R++
Sbjct: 457 LWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLL 508
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 102 TMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMK 160
T+V+ YGK G +A ++F++MP R+ ++W++++ A ++ + K + G++
Sbjct: 43 TLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLR 102
Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
P++ +++ ACA+LG+I G VH + + ++ +++VDMY+KCG ++SA +V
Sbjct: 103 PDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAV 162
Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
F+ I K+ +W AM+SG A +G +++LELF
Sbjct: 163 FDSIRVKNTISWTAMVSGYAKSGRKEEALELF 194
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDA 229
L CA +T +H++ + + + LA +V++Y KCG AL VF+ + ++D
Sbjct: 10 LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69
Query: 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFE 288
AW ++++ + + K+L +F + S +P + F A++ C + + G +
Sbjct: 70 IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129
Query: 289 N-MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347
+ + + Y + ++ + +VD+ A+ G++ A+ + + + W A++S
Sbjct: 130 HFIVSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFD----SIRVKNTISWTAMVSGYAK 183
Query: 348 YGKIEVGNRVWRKL 361
G+ E ++R L
Sbjct: 184 SGRKEEALELFRIL 197
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 54/141 (38%), Gaps = 32/141 (22%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I G Q + ++ Y DM+ G +PN TF LI AC +G +E + +
Sbjct: 310 LIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDY 369
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G SL H +T ++D G+ G + A L
Sbjct: 370 GIRP------------SLQH-------------------YTCLLDLLGRSGLLDEAENLI 398
Query: 121 EKMP-ERNAVSWSAIMAAYSR 140
MP + +W+A+++A R
Sbjct: 399 HTMPFPPDEPTWAALLSACKR 419
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 263 bits (673), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/436 (33%), Positives = 250/436 (57%), Gaps = 10/436 (2%)
Query: 1 MIRGY-MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
+IRGY ++ F + ++ Y M P ++TF L+KAC + L N G HA +
Sbjct: 120 VIRGYAIEGKFDE-AIAMYGCMRKEEITPVSFTFSALLKACGTMKDL-NLGRQFHAQTFR 177
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
+V +++++ Y + AR +FD+ P+RDV++WT ++ Y ++G+ E A EL
Sbjct: 178 LRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAEL 237
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
FE +P ++ V+W+A++ +++ + +E L F +M++ G++ +E + ++ACA LGA
Sbjct: 238 FESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGAS 297
Query: 180 TQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
A++ Y +V++ +A++DMYSKCG+V A++VF ++NK+ +++MI
Sbjct: 298 KYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMIL 357
Query: 238 GVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
G+A +G A+++L LF MV ++ +P TFV L C+H+ +V G +F++M +GV
Sbjct: 358 GLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGV 417
Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
+P +HY C+VDLL R G ++EA + I+ GG VWGALL ACRI+ E+
Sbjct: 418 QPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGG---VWGALLGACRIHNNPEIAEI 474
Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCS-VIEVNGVV 415
L E+ ++L N+Y AG +VRKLI E G+KK P S V++ NG +
Sbjct: 475 AAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQM 534
Query: 416 EEFLAGDNRHAQAGEI 431
+F G+ H + +I
Sbjct: 535 HKFFPGNLNHPMSNKI 550
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 21/279 (7%)
Query: 53 VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT-----ARALFDKSPDRDVVTWTTMVDGY 107
+H HV++ G + ++++ L+ + K+G AR + + R+ WT ++ GY
Sbjct: 68 IHGHVLRKGLDQSCYILTKLIRTLT---KLGVPMDPYARRVIEPVQFRNPFLWTAVIRGY 124
Query: 108 GKMGDFENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE 163
G F+ A ++ M + + ++SA++ A + D L+L RQ +
Sbjct: 125 AIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKD----LNLGRQFHAQTFRLRG 180
Query: 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223
V V + + + E++VI T ++ Y++ G++ A +FE
Sbjct: 181 FCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFES 240
Query: 224 ISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH---AKMV 280
+ KD AW AM++G A N +++LE FDRM KSG + E T ++ C +K
Sbjct: 241 LPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYA 300
Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319
+ + + + Y + + ++D+ ++ G VEEA
Sbjct: 301 DRAVQIAQK--SGYSPSDHVVIGSALIDMYSKCGNVEEA 337
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/435 (35%), Positives = 239/435 (54%), Gaps = 30/435 (6%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLD-MGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
MI GY Q K ++ ++ M + G N+ T ++ ACV G +H VVK
Sbjct: 375 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVK 433
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
G D FV ++L++ YS + K+ A +F K DRD+VTW TM+ GY E+A L
Sbjct: 434 RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLL 493
Query: 120 FEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
KM ER + SR+S +KPN L+++L +CA L
Sbjct: 494 LHKMQNLERK------VSKGASRVS----------------LKPNSITLMTILPSCAALS 531
Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
A+ +G +H+YA + +L +V + +A+VDMY+KCG + + VF+ I K+ WN +I
Sbjct: 532 ALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIM 591
Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
M+G+ +++++L M+ G +P E TF++V C+H+ MV +GL +F M YGVE
Sbjct: 592 AYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVE 651
Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
P +HYACVVDLL RAG ++EA + + M A W +LL A RI+ +E+G
Sbjct: 652 PSSDHYACVVDLLGRAGRIKEAYQLM--NMMPRDFNKAGAWSSLLGASRIHNNLEIGEIA 709
Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
+ L ++ S +VL NIY AG WD +A +VR+ + E G++K+PGCS IE V
Sbjct: 710 AQNLIQLEPNVASHYVLLANIYSSAGLWD-KATEVRRNMKEQGVRKEPGCSWIEHGDEVH 768
Query: 417 EFLAGDNRHAQAGEI 431
+F+AGD+ H Q+ ++
Sbjct: 769 KFVAGDSSHPQSEKL 783
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 147/289 (50%), Gaps = 35/289 (12%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
++R +++N + +V Y+DM+ +G +P+NY FP L+KA L +E G +HAHV KF
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDME-LGKQIHAHVYKF 126
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G+G D V++ T+V+ Y K GDF ++F
Sbjct: 127 GYGVDSVTVAN------------------------------TLVNLYRKCGDFGAVYKVF 156
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG--- 177
+++ ERN VSW++++++ ++ L FR M + ++P+ LVSV+TAC++L
Sbjct: 157 DRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPE 216
Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
+ G VH+Y R E N + +V MY K G + S+ + +D WN ++S
Sbjct: 217 GLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 275
Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286
+ N ++LE MV G +P E T +VL C+H +M+R G L
Sbjct: 276 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/359 (25%), Positives = 159/359 (44%), Gaps = 70/359 (19%)
Query: 21 MLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE-DPFVVSSLLEFYSLV 79
MLD EP+++T ++ AC L E M H GE + F+++
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIIN--------- 240
Query: 80 HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYS 139
T+V YGK+G +++ L R+ V+W+ ++++
Sbjct: 241 ----------------------TLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLC 278
Query: 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNV 198
+ E L R+M G++P+E + SVL AC+HL + G +H+YA K L++N
Sbjct: 279 QNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338
Query: 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258
+ +A+VDMY C V S VF+G+ ++ G WNAMI+G + N K++L LF M +S
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEES 398
Query: 259 -GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317
G TT V+ C VR G F A++G + + G+
Sbjct: 399 AGLLANSTTMAGVVPAC-----VRSG--AFSRKEAIHG-------------FVVKRGL-- 436
Query: 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
+ ++F++ L+ GKI++ R++ K+ + + ++T + Y
Sbjct: 437 DRDRFVQ--------------NTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGY 481
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 131/286 (45%), Gaps = 26/286 (9%)
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTAR-----ALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115
G D F +SS+L S + + T + AL + S D + + +VD Y +
Sbjct: 297 GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLS 356
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKPNESGLVSVLTACA 174
R +F+ M +R W+A++A YS+ KE L LF M+E G+ N + + V+ AC
Sbjct: 357 GRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACV 416
Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
GA ++ +H + + L+++ + ++DMYS+ G + A+ +F + ++D WN
Sbjct: 417 RSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNT 476
Query: 235 MISGVAMNGDAKKSLELFDRM------VKSGT-----QPTETTFVAVLTTCTHAKMVRDG 283
MI+G + + +L L +M V G +P T + +L +C + G
Sbjct: 477 MITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKG 536
Query: 284 LNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEEAEKFIEE 325
+ Y ++ L V VD+ A+ G ++ + K ++
Sbjct: 537 KEIH-----AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 113/222 (50%), Gaps = 8/222 (3%)
Query: 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185
R+ W ++ + R + +E + + M +G+KP+ ++L A A L + G +
Sbjct: 60 RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119
Query: 186 HSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244
H++ ++ + +V +A +V++Y KCG + VF+ IS ++ +WN++IS +
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179
Query: 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304
+ +LE F M+ +P+ T V+V+T C++ M +GL + + + A YG+ + E +
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPM-PEGLMMGKQVHA-YGLR-KGELNS 236
Query: 305 CVVDLLARAGMVEEAEKFIEEK--MGGLGGGDANVWGALLSA 344
+++ L M + K K +G GG D W +LS+
Sbjct: 237 FIINTL--VAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS 276
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 261 bits (667), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 154/431 (35%), Positives = 231/431 (53%), Gaps = 52/431 (12%)
Query: 18 YLDMLDMG-FEPNNYTFPPLIKACV-ILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75
Y ML+ G P+ +TFP ++KAC I G E G VH +VK GFG D +V + L+
Sbjct: 138 YRKMLERGESSPDKHTFPFVLKACAYIFGFSE--GKQVHCQIVKHGFGGDVYVNNGLIHL 195
Query: 76 YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
Y G G + AR++F++MPER+ VSW++++
Sbjct: 196 Y-------------------------------GSCGCLDLARKVFDEMPERSLVSWNSMI 224
Query: 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR---Y 192
A R ++ L LFR+MQ +P+ + SVL+ACA LG+++ G W H++ R
Sbjct: 225 DALVRFGEYDSALQLFREMQR-SFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDV 283
Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
+ +V++ ++++MY KCG + A VF+G+ +D +WNAMI G A +G A++++ F
Sbjct: 284 DVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFF 343
Query: 253 DRMV--KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
DRMV + +P TFV +L C H V G F+ M Y +EP LEHY C+VDL+
Sbjct: 344 DRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLI 403
Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDF 369
ARAG + EA I+ M DA +W +LL AC G +E+ + R + +
Sbjct: 404 ARAGYITEA---IDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNE 460
Query: 370 ST-------HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGD 422
S+ +VL +Y A + VRKL+SE G++K+PGCS IE+NG+ EF AGD
Sbjct: 461 SSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGD 520
Query: 423 NRHAQAGEIYR 433
H Q +IY+
Sbjct: 521 TSHPQTKQIYQ 531
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 166 LVSVLTACAHLGAITQGLWVHSYAKR--YHLEK-NVILATAVVDMYSKCGHVHSALSVFE 222
+ S+ C+ + + Q +H++ R Y E + L ++ + S V+ A VF+
Sbjct: 51 IFSLAETCSDMSQLKQ---LHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFD 107
Query: 223 GISNKDAGAWNAMISGVAMNGDAK-KSLELFDRMVKSG-TQPTETTFVAVLTTC------ 274
I N + WN +I A + K ++ L+ +M++ G + P + TF VL C
Sbjct: 108 SIENHSSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGF 167
Query: 275 -----THAKMVRDGL--NLFEN--MSAVYGV---------------EPQLEHYACVVDLL 310
H ++V+ G +++ N + +YG E L + ++D L
Sbjct: 168 SEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDAL 227
Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
R G + A + E M D ++LSAC G + +G
Sbjct: 228 VRFGEYDSALQLFRE-MQRSFEPDGYTMQSVLSACAGLGSLSLGT 271
>sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880
OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2
Length = 555
Score = 261 bits (667), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 158/509 (31%), Positives = 255/509 (50%), Gaps = 73/509 (14%)
Query: 1 MIRGYMQANFPKLSVFCYLDML-DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
MI+ Y++ S Y D+ + F P+N+TF L K+C + + G+ +H+ + +
Sbjct: 48 MIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQ-GLQLHSQIWR 106
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTT----------------- 102
FGF D +V + +++ Y+ KMG AR FD+ P R V+WT
Sbjct: 107 FGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKL 166
Query: 103 ---------------MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDF--- 144
M+DG+ K GD +AR LF++M + ++W+ ++ Y I D
Sbjct: 167 FDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAA 226
Query: 145 ----------------------------KEVLSLFRQMQ-EVGMKPNESGLVSVLTACAH 175
+E + LF++MQ + P++ ++SVL A +
Sbjct: 227 RKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISD 286
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
GA++ G W H + +R L+K V + TA++DMYSKCG + A +F+ + K +WNAM
Sbjct: 287 TGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAM 346
Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
I G A+NG+A+ +L+LF M+ +P E T +AV+T C H +V +G F M + G
Sbjct: 347 IHGYALNGNARAALDLFVTMMIE-EKPDEITMLAVITACNHGGLVEEGRKWFHVMREM-G 404
Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
+ ++EHY C+VDLL RAG ++EAE I G + + LSAC Y IE
Sbjct: 405 LNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNG---IILSSFLSACGQYKDIERAE 461
Query: 356 RVWRKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGV 414
R+ +K E+ + +VL N+Y + WD + V+ ++ + KK+ GCS+IE+N +
Sbjct: 462 RILKKAVELEPQNDGNYVLLRNLYAADKRWD-DFGMVKNVMRKNQAKKEVGCSLIEINYI 520
Query: 415 VEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443
V EF++GD H I+ V+ L N
Sbjct: 521 VSEFISGDTTHPHRRSIHLVLGDLLMHMN 549
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 31/175 (17%)
Query: 82 MGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141
+G AR LFD+ P RD ++ ++++ AY
Sbjct: 26 IGYARKLFDQRPQRD------------------------------DSFLSNSMIKAYLET 55
Query: 142 SDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200
+ + +L+R + +E P+ ++ +C+ + QGL +HS R+ ++ +
Sbjct: 56 RQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYV 115
Query: 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255
+T VVDMY+K G + A + F+ + ++ +W A+ISG G+ + +LFD+M
Sbjct: 116 STGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASKLFDQM 170
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/433 (31%), Positives = 242/433 (55%), Gaps = 6/433 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI Y + + + +M D P+ ++ AC G + + ++ +++
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMR-YNRAIYEFLIEN 241
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
D ++++L+ Y+ M AR F K R++ T MV GY K G ++A+ +F
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++ +++ V W+ +++AY +E L +F +M G+KP+ + SV++ACA+LG +
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILD 361
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
+ WVHS LE + + A+++MY+KCG + + VFE + ++ +W++MI+ ++
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
M+G+A +L LF RM + +P E TFV VL C+H+ +V +G +F +M+ Y + P+L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDL RA ++ EA + IE + +WG+L+SACRI+G++E+G ++
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIE---SMPVASNVVIWGSLMSACRIHGELELGKFAAKR 538
Query: 361 LAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
+ E+ VL NIY +E W+ + +R+++ E + K+ G S I+ NG EFL
Sbjct: 539 ILELEPDHDGALVLMSNIYAREQRWE-DVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFL 597
Query: 420 AGDNRHAQAGEIY 432
GD RH Q+ EIY
Sbjct: 598 IGDKRHKQSNEIY 610
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 178/353 (50%), Gaps = 14/353 (3%)
Query: 2 IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG 61
+R +++ P+ ++ Y + +G + ++F P++KA + L GM +H K
Sbjct: 83 LRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFE-GMELHGVAFKIA 141
Query: 62 FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFE 121
DPFV + ++ Y+ ++ AR +FD+ RDVVTW TM++ Y + G + A +LFE
Sbjct: 142 TLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFE 201
Query: 122 KMPERNAVS----WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
+M + N + I++A R + + +++ + E ++ + L +++T A G
Sbjct: 202 EMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAG 261
Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
+ + ++ + +N+ ++TA+V YSKCG + A +F+ KD W MIS
Sbjct: 262 CMDMA---REFFRKMSV-RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMIS 317
Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
+ +++L +F+ M SG +P + +V++ C + ++ D + V G+E
Sbjct: 318 AYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGIL-DKAKWVHSCIHVNGLE 376
Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
+L ++++ A+ G + +A + + EKM + W ++++A ++G+
Sbjct: 377 SELSINNALINMYAKCGGL-DATRDVFEKM---PRRNVVSWSSMINALSMHGE 425
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 136/287 (47%), Gaps = 9/287 (3%)
Query: 116 ARELFEKMPER-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174
A +F +P ++ ++ + SR S+ + + +++++ VG + ++ + +L A +
Sbjct: 63 ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122
Query: 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNA 234
+ A+ +G+ +H A + + + T +DMY+ CG ++ A +VF+ +S++D WN
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182
Query: 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294
MI G ++ +LF+ M S P E +++ C +R ++E +
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIE-N 241
Query: 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354
V +V + A AG ++ A +F + + + V A++S G+++
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRK----MSVRNLFVSTAMVSGYSKCGRLDDA 297
Query: 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401
++ + + + ++T + + Y E+ + EA +V + + +G+K
Sbjct: 298 QVIFDQTEKKDLVCWTTMI---SAYVESDYPQEALRVFEEMCCSGIK 341
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 249/464 (53%), Gaps = 40/464 (8%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+ +G++ + P S+ Y+ ML P++YT+ L+KA FG + AH+ KF
Sbjct: 97 LFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS---RFGESLQAHIWKF 153
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---------------- 104
GFG + ++L++FYS ++ AR +FD+ P+RD + WTTMV
Sbjct: 154 GFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLA 213
Query: 105 ---------------DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
+GY +G+ E A LF +MP ++ +SW+ ++ YS+ ++E ++
Sbjct: 214 NQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIA 273
Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209
+F +M E G+ P+E + +V++ACAHLG + G VH Y + +V + +A+VDMYS
Sbjct: 274 VFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYS 333
Query: 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269
KCG + AL VF + K+ WN++I G+A +G A+++L++F +M +P TFV+
Sbjct: 334 KCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVS 393
Query: 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329
V T CTHA +V +G ++ +M Y + +EHY +V L ++AG++ EA + I G
Sbjct: 394 VFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI----GN 449
Query: 330 LG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388
+ +A +WGALL CRI+ + + + KL + + + L ++Y E +
Sbjct: 450 MEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDV 509
Query: 389 NKVRKLISETGMKKK-PGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
++R + E G++K PG S I ++ F A D H+ + E+
Sbjct: 510 AEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEV 553
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 217 ALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276
A+S + + +NA+ G +SLEL+ RM++ P+ T+ +++ +
Sbjct: 79 AVSTMTQMQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSF 138
Query: 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336
A R G +L ++ +G ++ ++D + G + EA K +E + D
Sbjct: 139 AS--RFGESLQAHIWK-FGFGFHVKIQTTLIDFYSATGRIREARKVFDE----MPERDDI 191
Query: 337 VWGALLSACRIYGKIEVGNRVWRKLAE 363
W ++SA R ++ N + +++E
Sbjct: 192 AWTTMVSAYRRVLDMDSANSLANQMSE 218
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/447 (33%), Positives = 240/447 (53%), Gaps = 43/447 (9%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
++RG Q+ P+ +V Y +M G P+ YTF ++KAC L N G H VV+
Sbjct: 83 VLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSN-GFAFHGKVVRH 141
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG--------- 111
GF + +V ++L+ F++ +G A LFD S V W++M GY K G
Sbjct: 142 GFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLF 201
Query: 112 ----------------------DFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149
+ ++ARELF++ E++ V+W+A+++ Y KE L
Sbjct: 202 DEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALG 261
Query: 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA-KRYHLEKNVILAT----AV 204
+F++M++ G P+ ++S+L+ACA LG + G +H Y + + ++ + T A+
Sbjct: 262 IFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNAL 321
Query: 205 VDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE 264
+DMY+KCG + A+ VF G+ ++D WN +I G+A++ A+ S+E+F+ M + P E
Sbjct: 322 IDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNE 380
Query: 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324
TF+ V+ C+H+ V +G F M +Y +EP ++HY C+VD+L RAG +EEA F+E
Sbjct: 381 VTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVE 440
Query: 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG- 383
+A VW LL AC+IYG +E+G KL M + +VL NIY G
Sbjct: 441 SMK---IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQ 497
Query: 384 WDMEANKVRKLISETGMKKKPGCSVIE 410
WD KVRK+ +T +KK G S+IE
Sbjct: 498 WD-GVQKVRKMFDDTRVKKPTGVSLIE 523
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 9/263 (3%)
Query: 111 GDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
G + A +LF+++P+ + + ++ ++ ++ +SL+ +M++ G+ P+ VL
Sbjct: 60 GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119
Query: 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230
AC+ L + G H R+ N + A++ ++ CG + A +F+ +
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179
Query: 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290
AW++M SG A G +++ LFD M + + ++T C K + LF+
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEM----PYKDQVAWNVMITGCLKCKEMDSARELFDRF 235
Query: 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350
+ E + + ++ G +EA +E D +LLSAC + G
Sbjct: 236 T-----EKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGD 290
Query: 351 IEVGNRVWRKLAEMGITDFSTHV 373
+E G R+ + E S +V
Sbjct: 291 LETGKRLHIYILETASVSSSIYV 313
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 258 bits (658), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 232/425 (54%), Gaps = 41/425 (9%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI GY +A + K ++ + M + GFEP+ T ++ AC LG L
Sbjct: 204 MISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRT------------ 251
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
LLE ++ K+G + L K ++ YGK GD ++AR +F
Sbjct: 252 ---------GRLLEEMAITKKIGLSTFLGSK-----------LISMYGKCGDLDSARRVF 291
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+M +++ V+W+A++ YS+ E LF +M++ G+ P+ L +VL+AC +GA+
Sbjct: 292 NQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALE 351
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G + ++A L+ N+ +AT +VDMY KCG V AL VFE + K+ WNAMI+ A
Sbjct: 352 LGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYA 411
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
G AK++L LFDRM P++ TF+ VL+ C HA +V G F MS+++G+ P++
Sbjct: 412 HQGHAKEALLLFDRM---SVPPSDITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKI 468
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY ++DLL+RAGM++EA +F+E G D + A+L AC + + + R
Sbjct: 469 EHYTNIIDLLSRAGMLDEAWEFMER---FPGKPDEIMLAAILGACHKRKDVAIREKAMRM 525
Query: 361 LAEMG-ITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEF 418
L EM + +V+S N+ + WD E+ K+R L+ + G+ K PGCS IE+ G + EF
Sbjct: 526 LMEMKEAKNAGNYVISSNVLADMKMWD-ESAKMRALMRDRGVVKTPGCSWIEIEGELMEF 584
Query: 419 LAGDN 423
LAG +
Sbjct: 585 LAGSD 589
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 161/326 (49%), Gaps = 17/326 (5%)
Query: 27 EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86
EPN+Y+F +I+ + ++ + G D F + + + + ++G R
Sbjct: 93 EPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGR 152
Query: 87 A----LFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
+ LF +RDV +++ Y K G AR+LF+++ ER+ VSW+++++ YS
Sbjct: 153 SVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAG 212
Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
K+ + LFR+M+E G +P+E LVS+L AC+HLG + G + A + + L +
Sbjct: 213 YAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGS 272
Query: 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262
++ MY KCG + SA VF + KD AW AMI+ + NG + ++ +LF M K+G P
Sbjct: 273 KLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSP 332
Query: 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMVEE 318
T VL+ C + G + + E L+H V VD+ + G VEE
Sbjct: 333 DAGTLSTVLSACGSVGALELGKQI-----ETHASELSLQHNIYVATGLVDMYGKCGRVEE 387
Query: 319 AEKFIEEKMGGLGGGDANVWGALLSA 344
A + E + + W A+++A
Sbjct: 388 ALRVFE----AMPVKNEATWNAMITA 409
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 256 bits (653), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 147/448 (32%), Positives = 238/448 (53%), Gaps = 9/448 (2%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I+ Y + P S+ Y + G P+++TF + A + +H+ +
Sbjct: 53 LIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRL-LHSQFFRS 111
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF D F ++L+ Y+ + + AR +FD+ RDV W M+ GY + GD + A ELF
Sbjct: 112 GFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELF 171
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAI 179
+ MP +N SW+ +++ +S+ ++ E L +F M+ + +KPN +VSVL ACA+LG +
Sbjct: 172 DSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGEL 231
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISG 238
G + YA+ N+ + A ++MYSKCG + A +FE + N ++ +WN+MI
Sbjct: 232 EIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGS 291
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+A +G ++L LF +M++ G +P TFV +L C H MV G LF++M V+ + P
Sbjct: 292 LATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISP 351
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
+LEHY C++DLL R G ++EA I+ DA VWG LL AC +G +E+
Sbjct: 352 KLEHYGCMIDLLGRVGKLQEAYDLIKTMP---MKPDAVVWGTLLGACSFHGNVEIAEIAS 408
Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCS-VIEVNGVVE 416
L ++ T+ V+ NIY WD ++RKL+ + M K G S +EV V
Sbjct: 409 EALFKLEPTNPGNCVIMSNIYAANEKWD-GVLRMRKLMKKETMTKAAGYSYFVEVGVDVH 467
Query: 417 EFLAGDNRHAQAGEIYRVIHSFLKMSNL 444
+F D H ++ EIY+V+ + L
Sbjct: 468 KFTVEDKSHPRSYEIYQVLEEIFRRMKL 495
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 46/272 (16%)
Query: 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175
AR+LF+ ++ ++ AY E + L+ + G++P+ + A A
Sbjct: 35 ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 94
Query: 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
+ +HS R E + T ++ Y+K G + A VF+ +S +D WNAM
Sbjct: 95 FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 154
Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
I+G GD K ++ELFD M + T++ V++ + + L +F M
Sbjct: 155 ITGYQRRGDMKAAMELFDSMPRKNV----TSWTTVISGFSQNGNYSEALKMFLCMEKDKS 210
Query: 296 VEP----------------------QLEHYA-------------CVVDLLARAGMVEEAE 320
V+P +LE YA +++ ++ GM++ A+
Sbjct: 211 VKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAK 270
Query: 321 KFIEEKMGGLGGGDANV--WGALLSACRIYGK 350
+ EE G N+ W +++ + +GK
Sbjct: 271 RLFEEL-----GNQRNLCSWNSMIGSLATHGK 297
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 255 bits (651), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 138/435 (31%), Positives = 242/435 (55%), Gaps = 8/435 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
++ G+ ++ + K +V + + +GF P+ T ++ + V + N G +H +V+K
Sbjct: 223 ILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPS-VGDSEMLNMGRLIHGYVIKQ 281
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G +D V+S++++ Y + +LF++ + + G + G + A E+F
Sbjct: 282 GLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMF 341
Query: 121 EKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
E E+ N VSW++I+A ++ E L LFR+MQ G+KPN + S+L AC ++
Sbjct: 342 ELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNI 401
Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
A+ G H +A R HL NV + +A++DMY+KCG ++ + VF + K+ WN+++
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461
Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
+G +M+G AK+ + +F+ ++++ +P +F ++L+ C + +G F+ MS YG+
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGI 521
Query: 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356
+P+LEHY+C+V+LL RAG ++EA I+E D+ VWGALL++CR+ +++
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEMP---FEPDSCVWGALLNSCRLQNNVDLAEI 578
Query: 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVE 416
KL + + T+VL NIY G E + +R + G+KK PGCS I+V V
Sbjct: 579 AAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVY 638
Query: 417 EFLAGDNRHAQAGEI 431
LAGD H Q +I
Sbjct: 639 TLLAGDKSHPQIDQI 653
Score = 145 bits (365), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 6/302 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I +A S+ + M G P+++ P L K C L + G +H
Sbjct: 87 LIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFK-VGKQIHCVSCVS 145
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G D FV S+ Y +MG AR +FD+ D+DVVT + ++ Y + G E +
Sbjct: 146 GLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRIL 205
Query: 121 EKMP----ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL 176
+M E N VSW+ I++ ++R KE + +F+++ +G P++ + SVL +
Sbjct: 206 SEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDS 265
Query: 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI 236
+ G +H Y + L K+ + +A++DMY K GHV+ +S+F +AG NA I
Sbjct: 266 EMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYI 325
Query: 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
+G++ NG K+LE+F+ + + ++ +++ C + L LF M V GV
Sbjct: 326 TGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQ-VAGV 384
Query: 297 EP 298
+P
Sbjct: 385 KP 386
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 90/188 (47%)
Query: 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162
++ Y F +A + + +P+ S+S+++ A ++ F + + +F +M G+ P+
Sbjct: 56 LIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPD 115
Query: 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222
L ++ CA L A G +H + L+ + + ++ MY +CG + A VF+
Sbjct: 116 SHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFD 175
Query: 223 GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282
+S+KD +A++ A G ++ + + M SG + ++ +L+ + ++
Sbjct: 176 RMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKE 235
Query: 283 GLNLFENM 290
+ +F+ +
Sbjct: 236 AVVMFQKI 243
>sp|Q9LXE8|PP386_ARATH Pentatricopeptide repeat-containing protein At5g15340,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2
SV=1
Length = 623
Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/425 (33%), Positives = 238/425 (56%), Gaps = 18/425 (4%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAH--VVKFGFGEDPFVVSSLLEF 75
+++M E ++ + L C LE+ G H VK G V ++L++
Sbjct: 99 FVEMRRKRVEIDDVSVVCLFGVC---AKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDM 155
Query: 76 YSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM 135
Y + + +F++ ++ VV+WT ++D K E RE+F +MPERNAV+W+ ++
Sbjct: 156 YGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMV 215
Query: 136 AAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL 194
A Y +EVL L +M G N L S+L+ACA G + G WVH YA + +
Sbjct: 216 AGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEM 275
Query: 195 -------EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247
+V++ TA+VDMY+KCG++ S+++VF + ++ WNA+ SG+AM+G +
Sbjct: 276 MMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRM 335
Query: 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307
+++F +M++ +P + TF AVL+ C+H+ +V +G F ++ YG+EP+++HYAC+V
Sbjct: 336 VIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLR-FYGLEPKVDHYACMV 393
Query: 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367
DLL RAG++EEAE + E + V G+LL +C ++GK+E+ R+ R+L +M
Sbjct: 394 DLLGRAGLIEEAEILMREMP---VPPNEVVLGSLLGSCSVHGKVEIAERIKRELIQMSPG 450
Query: 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427
+ +L N+Y G A+ +R + + G++K PG S I VN V F +GD H +
Sbjct: 451 NTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPR 510
Query: 428 AGEIY 432
EIY
Sbjct: 511 TKEIY 515
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 113/240 (47%), Gaps = 19/240 (7%)
Query: 50 GMFVHAHVVKFGFGEDP--FVVSSLLEFYSLVHKMGTARALFDKSP--DRDVVTWTTMVD 105
G +HA + G + P ++ ++L +FY+ +M TA+ LFD+ P ++D V WTT++
Sbjct: 25 GKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLS 84
Query: 106 GYGKMGDFENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161
+ + G N+ +LF +M + + VS + +++ D L +Q V +K
Sbjct: 85 SFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLED----LGFAQQGHGVAVK- 139
Query: 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYH---LEKNVILATAVVDMYSKCGHVHSAL 218
G+++ + C L + + S KR EK+V+ T V+D K +
Sbjct: 140 --MGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGR 197
Query: 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHA 277
VF + ++A AW M++G G ++ LEL MV + G T ++L+ C +
Sbjct: 198 EVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQS 257
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 251 bits (642), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 139/411 (33%), Positives = 230/411 (55%), Gaps = 6/411 (1%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
MI+ Y P S+ + M G + YT+ PL+K+C L L FG VH +++
Sbjct: 73 MIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLR-FGKCVHGELIRT 131
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF + ++E Y+ +MG A+ +FD+ +R+VV W M+ G+ GD E LF
Sbjct: 132 GFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLF 191
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
++M ER+ VSW++++++ S+ +E L LF +M + G P+E+ +V+VL A LG +
Sbjct: 192 KQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLD 251
Query: 181 QGLWVHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
G W+HS A+ L K+ I + A+VD Y K G + +A ++F + ++ +WN +ISG
Sbjct: 252 TGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGS 311
Query: 240 AMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
A+NG + ++LFD M++ G P E TF+ VL C++ V G LF M + +E
Sbjct: 312 AVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEA 371
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
+ EHY +VDL++R+G + EA KF++ +A +WG+LLSACR +G +++
Sbjct: 372 RTEHYGAMVDLMSRSGRITEAFKFLKNMP---VNANAAMWGSLLSACRSHGDVKLAEVAA 428
Query: 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
+L ++ + +VL N+Y E G + KVR L+ + ++K G S I
Sbjct: 429 MELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 123/268 (45%), Gaps = 8/268 (2%)
Query: 108 GKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV 167
G + + + A +F + N + ++A++ YS + E LS F M+ G+ +E
Sbjct: 47 GSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYA 106
Query: 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227
+L +C+ L + G VH R + + VV++Y+ G + A VF+ +S +
Sbjct: 107 PLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSER 166
Query: 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287
+ WN MI G +GD ++ L LF +M ++ + ++ +++++ + R+ L LF
Sbjct: 167 NVVVWNLMIRGFCDSGDVERGLHLFKQM----SERSIVSWNSMISSLSKCGRDREALELF 222
Query: 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE--KMGGLGGGDANVWGALLSAC 345
M G +P V+ + A G+++ K+I + GL V AL+
Sbjct: 223 CEM-IDQGFDPDEATVVTVLPISASLGVLDTG-KWIHSTAESSGLFKDFITVGNALVDFY 280
Query: 346 RIYGKIEVGNRVWRKLAEMGITDFSTHV 373
G +E ++RK+ + ++T +
Sbjct: 281 CKSGDLEAATAIFRKMQRRNVVSWNTLI 308
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 250 bits (639), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 145/428 (33%), Positives = 230/428 (53%), Gaps = 45/428 (10%)
Query: 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLENF---GMFVHAHVVKFGFGEDPFVVSSLLE 74
Y M +G E + +T+ ++KACV N G +HAH+ + G+ +++
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIM----- 220
Query: 75 FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAI 134
TT+VD Y + G + A +F MP RN VSWSA+
Sbjct: 221 --------------------------TTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAM 254
Query: 135 MAAYSRISDFKEVLSLFRQM--QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192
+A Y++ E L FR+M + PN +VSVL ACA L A+ QG +H Y R
Sbjct: 255 IACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRR 314
Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
L+ + + +A+V MY +CG + VF+ + ++D +WN++IS ++G KK++++F
Sbjct: 315 GLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIF 374
Query: 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312
+ M+ +G PT TFV+VL C+H +V +G LFE M +G++PQ+EHYAC+VDLL R
Sbjct: 375 EEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGR 434
Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
A ++EA K +++ G VWG+LL +CRI+G +E+ R R+L + + +
Sbjct: 435 ANRLDEAAKMVQDMRTEPG---PKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNY 491
Query: 373 VLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
VL +IY EA WD E +V+KL+ G++K PG +EV + F++ D + +
Sbjct: 492 VLLADIYAEAQMWD-EVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVD----EFNPL 546
Query: 432 YRVIHSFL 439
IH+FL
Sbjct: 547 MEQIHAFL 554
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 132/279 (47%), Gaps = 11/279 (3%)
Query: 77 SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136
SL + R + D D+D T ++ Y +G + AR++F+K +R W+A+
Sbjct: 92 SLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFR 151
Query: 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC----AHLGAITQGLWVHSYAKRY 192
A + +EVL L+ +M +G++ + VL AC + + +G +H++ R
Sbjct: 152 ALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRR 211
Query: 193 HLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF 252
+V + T +VDMY++ G V A VF G+ ++ +W+AMI+ A NG A ++L F
Sbjct: 212 GYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271
Query: 253 DRMVK--SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310
M++ + P T V+VL C + G L G++ L + +V +
Sbjct: 272 REMMRETKDSSPNSVTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMY 330
Query: 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
R G +E ++ + + D W +L+S+ ++G
Sbjct: 331 GRCGKLEVGQRVFDR----MHDRDVVSWNSLISSYGVHG 365
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 7/204 (3%)
Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
P++ ++ C H +++ L VH + +++ LAT ++ MYS G V A V
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
F+ + WNA+ + + G ++ L L+ +M + G + T+ VL C ++
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECT 194
Query: 281 RDGLNLFENMSA---VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337
+ L + + A G + +VD+ AR G V+ A GG+ +
Sbjct: 195 VNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF----GGMPVRNVVS 250
Query: 338 WGALLSACRIYGKIEVGNRVWRKL 361
W A+++ GK R +R++
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREM 274
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/435 (32%), Positives = 234/435 (53%), Gaps = 11/435 (2%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVK- 59
MI GY+ F + ++ M+ G E + +T+P +I+AC G L+ G VHA+V++
Sbjct: 257 MISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQ-LGKQVHAYVLRR 315
Query: 60 --FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAR 117
F F D +SL+ Y K ARA+F+K P +D+V+W ++ GY G A+
Sbjct: 316 EDFSFHFD----NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAK 371
Query: 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177
+F++M E+N +SW +++ + +E L LF M+ G +P + + +CA LG
Sbjct: 372 LIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLG 431
Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
A G H+ + + ++ A++ MY+KCG V A VF + D+ +WNA+I+
Sbjct: 432 AYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIA 491
Query: 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE 297
+ +G +++++++ M+K G +P T + VLT C+HA +V G F++M VY +
Sbjct: 492 ALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIP 551
Query: 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357
P +HYA ++DLL R+G +AE IE A +W ALLS CR++G +E+G
Sbjct: 552 PGADHYARLIDLLCRSGKFSDAESVIESLP---FKPTAEIWEALLSGCRVHGNMELGIIA 608
Query: 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
KL + T++L N++ G E +VRKL+ + G+KK+ CS IE+ V
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668
Query: 418 FLAGDNRHAQAGEIY 432
FL D H +A +Y
Sbjct: 669 FLVDDTSHPEAEAVY 683
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 192/412 (46%), Gaps = 62/412 (15%)
Query: 1 MIRGYMQAN--FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV 58
MI G+ N + +++FC M GF+P+N+TF ++ ++ E + HA +
Sbjct: 119 MITGFSHNNDGYSAINLFC--KMKHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAAL 176
Query: 59 KFGFGEDPFVVSSLLEFY-------SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG 111
K G G V ++L+ Y SL+H +AR +FD+ ++D +WTTM+ GY K G
Sbjct: 177 KSGAGYITSVSNALVSVYSKCASSPSLLH---SARKVFDEILEKDERSWTTMMTGYVKNG 233
Query: 112 DFENARELFEKMPER-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
F+ EL E M + V+++A+++ Y ++E L + R+M G++ +E SV+
Sbjct: 234 YFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVI 293
Query: 171 TACAHLGAITQGLWVHSYAKR-----YHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225
ACA G + G VH+Y R +H + ++V +Y KCG A ++FE +
Sbjct: 294 RACATAGLLQLGKQVHAYVLRREDFSFHFD------NSLVSLYYKCGKFDEARAIFEKMP 347
Query: 226 NKDAGAWNA-------------------------------MISGVAMNGDAKKSLELFDR 254
KD +WNA MISG+A NG ++ L+LF
Sbjct: 348 AKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSC 407
Query: 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314
M + G +P + F + +C +G + + G + L ++ + A+ G
Sbjct: 408 MKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKI-GFDSSLSAGNALITMYAKCG 466
Query: 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
+VEEA + + M L D+ W AL++A +G V+ ++ + GI
Sbjct: 467 VVEEARQ-VFRTMPCL---DSVSWNALIAALGQHGHGAEAVDVYEEMLKKGI 514
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 169/376 (44%), Gaps = 49/376 (13%)
Query: 53 VHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112
VH +++ FGF +++ L++ Y ++ AR LFD+ + D + TTMV GY GD
Sbjct: 36 VHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGD 95
Query: 113 FENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170
AR +FEK P R+ V ++A++ +S +D ++LF +M+ G KP+ SVL
Sbjct: 96 ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155
Query: 171 TACAHLGAI-TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH----VHSALSVFEGIS 225
A + Q + H+ A + ++ A+V +YSKC +HSA VF+ I
Sbjct: 156 AGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEIL 215
Query: 226 NKDAGAW--------------------------------NAMISGVAMNGDAKKSLELFD 253
KD +W NAMISG G +++LE+
Sbjct: 216 EKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVR 275
Query: 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY-ACVVDLLAR 312
RMV SG + E T+ +V+ C A +++ G + + V E H+ +V L +
Sbjct: 276 RMVSSGIELDEFTYPSVIRACATAGLLQLGKQVH---AYVLRREDFSFHFDNSLVSLYYK 332
Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372
G +EA E+ + D W ALLS G I +++++ E I +
Sbjct: 333 CGKFDEARAIFEK----MPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIM 388
Query: 373 V--LSYNIYKEAGWDM 386
+ L+ N + E G +
Sbjct: 389 ISGLAENGFGEEGLKL 404
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/466 (31%), Positives = 242/466 (51%), Gaps = 39/466 (8%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+IRG + + SV ++ ML +G +P+ TFP ++K+ LG G +HA +K
Sbjct: 97 LIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLG-FRWLGRALHAATLKN 155
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR------------------------- 95
D FV SL++ Y+ ++ A +F++SPDR
Sbjct: 156 FVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMA 215
Query: 96 ----------DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145
+ +W+T++ GY G+ A++LFE MPE+N VSW+ ++ +S+ D++
Sbjct: 216 TTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYE 275
Query: 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205
+S + +M E G+KPNE + +VL+AC+ GA+ G+ +H Y ++ + + TA+V
Sbjct: 276 TAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALV 335
Query: 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265
DMY+KCG + A +VF +++KD +W AMI G A++G ++++ F +M+ SG +P E
Sbjct: 336 DMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEV 395
Query: 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
F+AVLT C ++ V GLN F++M Y +EP L+HY VVDLL RAG + EA + +E
Sbjct: 396 VFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVEN 455
Query: 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385
D W AL AC+ + V + L E+ +++ + G
Sbjct: 456 MP---INPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHASKGNI 512
Query: 386 MEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEI 431
+ K R + + ++ G S IE++G + +F AGD H EI
Sbjct: 513 QDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEI 558
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/413 (18%), Positives = 150/413 (36%), Gaps = 115/413 (27%)
Query: 23 DMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82
D P+ F LI AC L + VHA +++ G V + L+ SL+
Sbjct: 22 DRQASPDESHFISLIHACKDTASLRH----VHAQILRRGVLSSR-VAAQLVSCSSLL--- 73
Query: 83 GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRIS 142
KSPD + +F ERN +A++ + +
Sbjct: 74 --------KSPDYSL--------------------SIFRNSEERNPFVLNALIRGLTENA 105
Query: 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202
F+ + F M +G+KP+ VL + + LG G +H+ + ++ + +
Sbjct: 106 RFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNFVDCDSFVRL 165
Query: 203 AVVDMYSKCGHVHSALSVFE-----------------------------------GISNK 227
++VDMY+K G + A VFE + +
Sbjct: 166 SLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPER 225
Query: 228 DAGAWNAMISGVAMNGDAKKSLELFD-------------------------------RMV 256
++G+W+ +I G +G+ ++ +LF+ M+
Sbjct: 226 NSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEML 285
Query: 257 KSGTQPTETTFVAVLTTCTHAKMVRDGLN----LFENMSAVYGVEPQLEHYACVVDLLAR 312
+ G +P E T AVL+ C+ + + G+ + +N G++ +VD+ A+
Sbjct: 286 EKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDN-----GIKLDRAIGTALVDMYAK 340
Query: 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
G ++ A + D W A++ ++G+ + +R++ G
Sbjct: 341 CGELDCAATV----FSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSG 389
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 96/230 (41%), Gaps = 33/230 (14%)
Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
P+ES +S++ AC ++ VH+ R + + + A +V S +LS+
Sbjct: 27 PDESHFISLIHACKDTASLRH---VHAQILRRGVLSSRV-AAQLVSCSSLLKSPDYSLSI 82
Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT----- 275
F ++ NA+I G+ N + S+ F M++ G +P TF VL + +
Sbjct: 83 FRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFR 142
Query: 276 ------HAKMVRDGLNL--FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327
HA +++ ++ F +S +VD+ A+ G ++ A + EE
Sbjct: 143 WLGRALHAATLKNFVDCDSFVRLS--------------LVDMYAKTGQLKHAFQVFEESP 188
Query: 328 GGLGGGDANVWGALLSA-CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376
+ +W L++ CR + + ++R + E +ST + Y
Sbjct: 189 DRIKKESILIWNVLINGYCRA-KDMHMATTLFRSMPERNSGSWSTLIKGY 237
>sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330
OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1
Length = 467
Score = 249 bits (637), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/415 (35%), Positives = 234/415 (56%), Gaps = 11/415 (2%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+IR Y+ K S+ + ML +PNN TFP LIKA + ++G+ +H +K
Sbjct: 57 LIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSV-SYGVALHGQALKR 115
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF DPFV +S + FY V + ++R +FD + VV +++D G+ G+ + A E F
Sbjct: 116 GFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFEYF 175
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM---QEVGMKPNESGLVSVLTACAHL- 176
++MP + VSW+ ++ +S+ + L +F +M + + PNE+ VSVL++CA+
Sbjct: 176 QRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCANFD 235
Query: 177 -GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM 235
G I G +H Y + L TA++DMY K G + AL++F+ I +K AWNA+
Sbjct: 236 QGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWNAI 295
Query: 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295
IS +A NG K++LE+F+ M S P T +A+LT C +K+V G+ LF ++ + Y
Sbjct: 296 ISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACARSKLVDLGIQLFSSICSEYK 355
Query: 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355
+ P EHY CVVDL+ RAG++ +A FI+ DA+V GALL AC+I+ E+GN
Sbjct: 356 IIPTSEHYGCVVDLIGRAGLLVDAANFIQSLP---FEPDASVLGALLGACKIHENTELGN 412
Query: 356 RVWRKLAEMGITDFSTHV-LSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVI 409
V ++L + +V LS ++ W EA K+RK + E G++K P SV+
Sbjct: 413 TVGKQLIGLQPQHCGQYVALSTFNALDSNWS-EAEKMRKAMIEAGIRKIPAYSVL 466
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 74/180 (41%), Gaps = 34/180 (18%)
Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
++ ++ +Y ++K L+LF M ++PN S++ A +++ G+ +H A
Sbjct: 54 YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQAL 113
Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
+ + + T+ V Y + G + S+ +F+ I N A N+++ NG+ + E
Sbjct: 114 KRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFE 173
Query: 251 LFDRMV----------------------------------KSGTQPTETTFVAVLTTCTH 276
F RM ++ P E TFV+VL++C +
Sbjct: 174 YFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCAN 233
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 215/353 (60%), Gaps = 8/353 (2%)
Query: 70 SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV 129
+S+++ Y ++ A+ LFD P RDVVTW TM+DGY K+G +A+ LF++MP R+ V
Sbjct: 256 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVV 315
Query: 130 SWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188
+++++MA Y + E L +F M+ E + P+++ LV VL A A LG +++ + +H Y
Sbjct: 316 AYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 375
Query: 189 --AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK 246
K+++L L A++DMYSKCG + A+ VFEGI NK WNAMI G+A++G +
Sbjct: 376 IVEKQFYLGGK--LGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGE 433
Query: 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV 306
+ ++ ++ + +P + TFV VL C+H+ +V++GL FE M + +EP+L+HY C+
Sbjct: 434 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCM 493
Query: 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366
VD+L+R+G +E A+ IEE + D +W L+AC + + E G V + L
Sbjct: 494 VDILSRSGSIELAKNLIEEM--PVEPNDV-IWRTFLTACSHHKEFETGELVAKHLILQAG 550
Query: 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
+ S++VL N+Y G + +VR ++ E ++K PGCS IE++G V EF
Sbjct: 551 YNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFF 603
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 177/357 (49%), Gaps = 26/357 (7%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I+ + P+ ++ ML+ G + ++ ++KAC LG ++ GM +H + K
Sbjct: 92 VIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKG-GMQIHGFLKKT 150
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
G D F+ + L+ Y +G +R +FD+ P RD V++ +M+DGY K G +ARELF
Sbjct: 151 GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARELF 210
Query: 121 EKMP--ERNAVSWSAIMAAYSRISDFKEVLS-LFRQMQEVGMKPNESGLVSVLTACAHLG 177
+ MP +N +SW+++++ Y++ SD ++ S LF M E + S++ G
Sbjct: 211 DLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWN----SMIDGYVKHG 266
Query: 178 AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237
I + R ++V+ ++D Y+K G VH A ++F+ + ++D A+N+M++
Sbjct: 267 RIEDAKGLFDVMPR----RDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMA 322
Query: 238 GVAMNGDAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV 296
G N ++LE+F M K S P +TT V VL + +++ +Y V
Sbjct: 323 GYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMH-----LYIV 377
Query: 297 EPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349
E Q + ++D+ ++ G ++ A E G+ + W A++ I+G
Sbjct: 378 EKQFYLGGKLGVALIDMYSKCGSIQHAMLVFE----GIENKSIDHWNAMIGGLAIHG 430
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 97/199 (48%), Gaps = 16/199 (8%)
Query: 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190
W+A++ ++S D ++ L L M E G+ ++ L VL AC+ LG + G+ +H + K
Sbjct: 89 WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148
Query: 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250
+ L ++ L ++ +Y KCG + + +F+ + +D+ ++N+MI G G + E
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARE 208
Query: 251 LFDRMVKSGTQPTE-TTFVAVLTTCTHAKMVRDGLN----LFENMSAVYGVEPQLEHYAC 305
LFD M P E ++ + + DG++ LF +M E L +
Sbjct: 209 LFDLM------PMEMKNLISWNSMISGYAQTSDGVDIASKLFADMP-----EKDLISWNS 257
Query: 306 VVDLLARAGMVEEAEKFIE 324
++D + G +E+A+ +
Sbjct: 258 MIDGYVKHGRIEDAKGLFD 276
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 248 bits (633), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/435 (32%), Positives = 239/435 (54%), Gaps = 39/435 (8%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
+IRGY + + Y +M G EP+ +T+P LIKA + + G +H+ V++
Sbjct: 91 LIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVR-LGETIHSVVIR 149
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
GFG +V +SLL Y+ GD +A ++
Sbjct: 150 SGFGSLIYVQNSLLHLYA-------------------------------NCGDVASAYKV 178
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
F+KMPE++ V+W++++ ++ +E L+L+ +M G+KP+ +VS+L+ACA +GA+
Sbjct: 179 FDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGAL 238
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
T G VH Y + L +N+ + ++D+Y++CG V A ++F+ + +K++ +W ++I G+
Sbjct: 239 TLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGL 298
Query: 240 AMNGDAKKSLELFDRMVKS-GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
A+NG K+++ELF M + G P E TFV +L C+H MV++G F M Y +EP
Sbjct: 299 AVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEP 358
Query: 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358
++EH+ C+VDLLARAG V++A ++I+ + +W LL AC ++G ++
Sbjct: 359 RIEHFGCMVDLLARAGQVKKAYEYIKSMP---MQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 359 RKLAEMGITDFSTHVLSYNIY-KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEE 417
++ ++ +VL N+Y E W + K+RK + G+KK PG S++EV V E
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWS-DVQKIRKQMLRDGVKKVPGHSLVEVGNRVHE 474
Query: 418 FLAGDNRHAQAGEIY 432
FL GD H Q+ IY
Sbjct: 475 FLMGDKSHPQSDAIY 489
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 3/212 (1%)
Query: 116 ARELFEKMPER-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTAC 173
A ++F K+ + N W+ ++ Y+ I + SL+R+M+ G+ +P+ ++ A
Sbjct: 72 AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131
Query: 174 AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233
+ + G +HS R + + +++ +Y+ CG V SA VF+ + KD AWN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191
Query: 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293
++I+G A NG +++L L+ M G +P T V++L+ C + G + M V
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251
Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325
G+ L ++DL AR G VEEA+ +E
Sbjct: 252 -GLTRNLHSSNVLLDLYARCGRVEEAKTLFDE 282
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 248 bits (632), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 37/433 (8%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+ GY + + ++ + M++MG +P++Y ++ ACV +G L++ G ++ ++ +
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDS-GEWIVKYMEEM 241
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
++ FV TT+V+ Y K G E AR +F
Sbjct: 242 EMQKNSFVR-------------------------------TTLVNLYAKCGKMEKARSVF 270
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+ M E++ V+WS ++ Y+ S KE + LF QM + +KP++ +V L++CA LGA+
Sbjct: 271 DSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALD 330
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G W S R+ N+ +A A++DMY+KCG + VF+ + KD NA ISG+A
Sbjct: 331 LGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLA 390
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300
NG K S +F + K G P +TF+ +L C HA +++DGL F +S VY ++ +
Sbjct: 391 KNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTV 450
Query: 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360
EHY C+VDL RAGM+++A + I + +A VWGALLS CR+ ++ V ++
Sbjct: 451 EHYGCMVDLWGRAGMLDDAYRLICDMP---MRPNAIVWGALLSGCRLVKDTQLAETVLKE 507
Query: 361 LAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFL 419
L + + +V NIY G WD EA +VR ++++ GMKK PG S IE+ G V EFL
Sbjct: 508 LIALEPWNAGNYVQLSNIYSVGGRWD-EAAEVRDMMNKKGMKKIPGYSWIELEGKVHEFL 566
Query: 420 AGDNRHAQAGEIY 432
A D H + +IY
Sbjct: 567 ADDKSHPLSDKIY 579
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 146/274 (53%), Gaps = 32/274 (11%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF 60
+I G++ + ++ +L + G + +TFP ++KAC G+ +H+ VVK
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACT-RASSRKLGIDLHSLVVKC 140
Query: 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELF 120
GF D ++SLL YS G G++ D A +LF
Sbjct: 141 GFNHDVAAMTSLLSIYS----------------------------GSGRLND---AHKLF 169
Query: 121 EKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180
+++P+R+ V+W+A+ + Y+ +E + LF++M E+G+KP+ +V VL+AC H+G +
Sbjct: 170 DEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLD 229
Query: 181 QGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVA 240
G W+ Y + ++KN + T +V++Y+KCG + A SVF+ + KD W+ MI G A
Sbjct: 230 SGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYA 289
Query: 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274
N K+ +ELF +M++ +P + + V L++C
Sbjct: 290 SNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSC 323
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 5/208 (2%)
Query: 119 LFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178
LF N +++++ + F E L LF +++ G+ + VL AC +
Sbjct: 67 LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126
Query: 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISG 238
G+ +HS + +V T+++ +YS G ++ A +F+ I ++ W A+ SG
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186
Query: 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298
+G +++++LF +MV+ G +P V VL+ C H + G + + M +E
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE---MEM 243
Query: 299 QLEHY--ACVVDLLARAGMVEEAEKFIE 324
Q + +V+L A+ G +E+A +
Sbjct: 244 QKNSFVRTTLVNLYAKCGKMEKARSVFD 271
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 196/332 (59%), Gaps = 3/332 (0%)
Query: 101 TTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK 160
T + Y K+ + E+AR+LF++ PE++ SW+A+++ Y++ ++ +SLFR+MQ+
Sbjct: 358 TALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFS 417
Query: 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220
PN + +L+ACA LGA++ G WVH + E ++ ++TA++ MY+KCG + A +
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 221 FEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280
F+ ++ K+ WN MISG ++G +++L +F M+ SG PT TF+ VL C+HA +V
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLV 537
Query: 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340
++G +F +M YG EP ++HYAC+VD+L RAG ++ A +FIE G ++VW
Sbjct: 538 KEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPG---SSVWET 594
Query: 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400
LL ACRI+ + V KL E+ + HVL NI+ +A VR+ + +
Sbjct: 595 LLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKL 654
Query: 401 KKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432
K PG ++IE+ F +GD H Q EIY
Sbjct: 655 AKAPGYTLIEIGETPHVFTSGDQSHPQVKEIY 686
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 149/336 (44%), Gaps = 35/336 (10%)
Query: 94 DRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQ 153
D +++ + +V Y K E+AR++F++MPE++ + W+ +++ Y + + E + +FR
Sbjct: 151 DSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRD 210
Query: 154 M-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212
+ E + + + L+ +L A A L + G+ +HS A + + + T + +YSKCG
Sbjct: 211 LINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG 270
Query: 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272
+ ++F D A+NAMI G NG+ + SL LF ++ SG + +T V+++
Sbjct: 271 KIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVP 330
Query: 273 TCTHAKM-------------------------VRDGLNLFENMSAVYGVEPQ--LEHYAC 305
H + V LN E+ ++ P+ L +
Sbjct: 331 VSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNA 390
Query: 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365
++ + G+ E+A E + +LSAC G + +G V +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRS-- 448
Query: 366 ITDFSTHVLSYN----IYKEAGWDMEANKVRKLISE 397
TDF + + +Y + G EA ++ L+++
Sbjct: 449 -TDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTK 483
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 153/374 (40%), Gaps = 53/374 (14%)
Query: 1 MIRGYMQANFPKLSVFCYLDMLDMGFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVK 59
MI GY + S+ + D+++ + T ++ A L L GM +H+ K
Sbjct: 191 MISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELR-LGMQIHSLATK 249
Query: 60 FGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENAREL 119
G +V++ + YS K+ ALF + D+V + M+ GY G+ E +
Sbjct: 250 TGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELS--- 306
Query: 120 FEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179
LSLF+++ G + S LVS++ HL I
Sbjct: 307 ----------------------------LSLFKELMLSGARLRSSTLVSLVPVSGHLMLI 338
Query: 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239
+H Y + + + ++TA+ +YSK + SA +F+ K +WNAMISG
Sbjct: 339 YA---IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395
Query: 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH------AKMVRDGLNLFENMSAV 293
NG + ++ LF M KS P T +L+ C K V D + + S++
Sbjct: 396 TQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSI 455
Query: 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353
Y ++ + A+ G + EA + + + + W ++S ++G+ +
Sbjct: 456 YVS-------TALIGMYAKCGSIAEARRLFDL----MTKKNEVTWNTMISGYGLHGQGQE 504
Query: 354 GNRVWRKLAEMGIT 367
++ ++ GIT
Sbjct: 505 ALNIFYEMLNSGIT 518
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Query: 96 DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155
D+ T + +G AR++F + + ++ +M +S LS+F ++
Sbjct: 51 DISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLR 110
Query: 156 E-VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214
+ +KPN S ++A + G +H A + ++L + +V MY K V
Sbjct: 111 KSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRV 170
Query: 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF-DRMVKSGTQPTETTFVAVLTT 273
A VF+ + KD WN MISG N +S+++F D + +S T+ TT + +L
Sbjct: 171 EDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230
Query: 274 CTHAKMVRDGLNL 286
+ +R G+ +
Sbjct: 231 VAELQELRLGMQI 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,091,608
Number of Sequences: 539616
Number of extensions: 6989118
Number of successful extensions: 22424
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 16383
Number of HSP's gapped (non-prelim): 2176
length of query: 445
length of database: 191,569,459
effective HSP length: 121
effective length of query: 324
effective length of database: 126,275,923
effective search space: 40913399052
effective search space used: 40913399052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)