Query 047840
Match_columns 445
No_of_seqs 573 out of 2813
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 03:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.9E-69 6.2E-74 526.6 49.6 438 2-443 94-602 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 1.9E-67 4.1E-72 525.7 49.5 437 1-443 259-765 (857)
3 PLN03218 maturation of RBCL 1; 100.0 6.7E-60 1.5E-64 463.7 43.3 407 3-411 378-854 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 5.8E-60 1.2E-64 464.2 42.4 382 27-410 367-795 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 3E-59 6.6E-64 466.8 41.1 398 1-406 158-627 (857)
6 PLN03081 pentatricopeptide (PP 100.0 5E-55 1.1E-59 426.6 40.4 397 27-437 84-487 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-27 3.3E-32 243.7 42.5 387 3-400 473-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-27 3.3E-32 243.6 41.8 386 2-398 438-832 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 7.7E-23 1.7E-27 180.7 26.2 370 4-387 125-508 (966)
10 TIGR00990 3a0801s09 mitochondr 99.9 5.3E-21 1.1E-25 185.0 39.1 387 4-398 136-571 (615)
11 PRK11788 tetratricopeptide rep 99.9 3.7E-22 7.9E-27 183.6 29.3 270 130-405 71-354 (389)
12 PRK11447 cellulose synthase su 99.9 1.7E-20 3.7E-25 193.0 43.3 387 4-402 278-745 (1157)
13 PRK15174 Vi polysaccharide exp 99.9 9.4E-20 2E-24 175.8 38.5 356 5-368 15-385 (656)
14 KOG4626 O-linked N-acetylgluco 99.9 4.1E-21 8.9E-26 169.9 26.4 357 31-398 117-485 (966)
15 PRK11788 tetratricopeptide rep 99.9 1E-20 2.2E-25 174.1 30.0 287 73-365 42-348 (389)
16 PRK11447 cellulose synthase su 99.9 1.2E-19 2.7E-24 186.7 40.0 352 37-399 276-701 (1157)
17 PRK15174 Vi polysaccharide exp 99.9 1.9E-19 4.1E-24 173.7 35.2 323 70-399 46-382 (656)
18 PRK10049 pgaA outer membrane p 99.9 6.1E-19 1.3E-23 173.8 39.3 388 3-398 23-456 (765)
19 PRK14574 hmsH outer membrane p 99.9 3E-17 6.4E-22 159.1 42.3 388 4-397 43-512 (822)
20 PRK09782 bacteriophage N4 rece 99.9 4.9E-17 1.1E-21 160.8 41.9 229 162-398 476-706 (987)
21 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-17 3.4E-22 160.9 35.8 353 35-398 132-537 (615)
22 PRK10049 pgaA outer membrane p 99.8 3.8E-17 8.3E-22 161.2 38.2 362 3-372 57-464 (765)
23 PRK09782 bacteriophage N4 rece 99.8 2.8E-16 6.1E-21 155.5 42.4 376 12-398 164-672 (987)
24 PRK14574 hmsH outer membrane p 99.8 2.2E-15 4.7E-20 146.3 40.3 353 39-398 43-479 (822)
25 KOG2003 TPR repeat-containing 99.8 6.5E-16 1.4E-20 132.6 23.5 212 176-394 503-718 (840)
26 PF13429 TPR_15: Tetratricopep 99.7 8E-18 1.7E-22 146.8 11.4 258 133-396 13-275 (280)
27 KOG2002 TPR-containing nuclear 99.7 3.9E-15 8.4E-20 139.1 29.1 387 3-398 315-745 (1018)
28 KOG2003 TPR repeat-containing 99.7 6.6E-15 1.4E-19 126.5 27.8 386 4-397 246-688 (840)
29 KOG4422 Uncharacterized conser 99.7 1.7E-14 3.6E-19 123.2 29.8 307 6-329 126-462 (625)
30 KOG1915 Cell cycle control pro 99.7 8E-14 1.7E-18 120.5 33.2 423 8-443 86-541 (677)
31 KOG2002 TPR-containing nuclear 99.7 6.1E-15 1.3E-19 137.8 28.3 387 10-400 251-711 (1018)
32 KOG2076 RNA polymerase III tra 99.7 2.3E-14 5E-19 133.1 30.1 323 71-396 144-510 (895)
33 PRK10747 putative protoheme IX 99.7 3.6E-14 7.7E-19 129.5 30.0 277 110-397 97-389 (398)
34 KOG1155 Anaphase-promoting com 99.7 4.5E-13 9.7E-18 115.7 31.1 332 62-397 160-494 (559)
35 KOG0547 Translocase of outer m 99.7 3.7E-13 8E-18 116.9 30.1 380 4-397 124-565 (606)
36 KOG0495 HAT repeat protein [RN 99.7 1.9E-12 4.2E-17 116.4 34.2 366 32-412 518-892 (913)
37 KOG1126 DNA-binding cell divis 99.7 1.8E-14 3.9E-19 129.8 20.7 277 112-398 334-620 (638)
38 KOG1126 DNA-binding cell divis 99.7 6E-14 1.3E-18 126.4 23.6 278 81-369 334-625 (638)
39 PRK10747 putative protoheme IX 99.7 8E-13 1.7E-17 120.7 31.4 277 79-364 97-390 (398)
40 PF13429 TPR_15: Tetratricopep 99.7 7.6E-16 1.6E-20 134.4 11.1 252 104-363 15-276 (280)
41 TIGR00540 hemY_coli hemY prote 99.6 2.3E-12 4.9E-17 118.4 32.3 128 263-395 262-396 (409)
42 KOG0495 HAT repeat protein [RN 99.6 1.2E-11 2.7E-16 111.4 35.4 294 99-399 518-847 (913)
43 TIGR00540 hemY_coli hemY prote 99.6 8.5E-13 1.8E-17 121.2 28.9 284 77-363 95-398 (409)
44 KOG2076 RNA polymerase III tra 99.6 3.8E-12 8.1E-17 118.7 31.9 351 7-363 151-554 (895)
45 KOG4422 Uncharacterized conser 99.6 7.9E-12 1.7E-16 107.1 30.6 362 62-438 203-622 (625)
46 COG2956 Predicted N-acetylgluc 99.6 2.7E-12 6E-17 105.9 23.8 212 79-291 48-276 (389)
47 COG3071 HemY Uncharacterized e 99.6 1.3E-11 2.8E-16 105.0 28.6 279 110-397 97-389 (400)
48 COG2956 Predicted N-acetylgluc 99.6 4.4E-12 9.5E-17 104.7 24.8 291 109-405 47-354 (389)
49 KOG1915 Cell cycle control pro 99.6 1.4E-10 2.9E-15 101.0 34.1 382 6-399 118-537 (677)
50 KOG1173 Anaphase-promoting com 99.6 5.5E-11 1.2E-15 105.6 31.3 381 5-396 26-516 (611)
51 KOG1155 Anaphase-promoting com 99.6 9.2E-12 2E-16 107.7 25.7 283 74-364 235-536 (559)
52 TIGR02521 type_IV_pilW type IV 99.5 6.7E-12 1.5E-16 106.7 23.2 198 198-397 31-231 (234)
53 KOG4318 Bicoid mRNA stability 99.5 1.2E-11 2.6E-16 115.0 23.9 270 16-312 11-283 (1088)
54 COG3071 HemY Uncharacterized e 99.5 7E-11 1.5E-15 100.7 26.3 254 140-400 96-359 (400)
55 PRK12370 invasion protein regu 99.5 3.8E-11 8.2E-16 114.6 25.7 263 127-399 255-536 (553)
56 TIGR02521 type_IV_pilW type IV 99.4 9E-11 2E-15 99.8 23.7 202 128-365 31-233 (234)
57 KOG1129 TPR repeat-containing 99.4 1.7E-11 3.7E-16 101.5 17.1 227 167-398 227-458 (478)
58 KOG1840 Kinesin light chain [C 99.4 7.4E-10 1.6E-14 101.2 28.4 234 163-396 199-477 (508)
59 KOG1129 TPR repeat-containing 99.4 2.4E-11 5.2E-16 100.6 16.6 230 132-367 227-461 (478)
60 KOG1174 Anaphase-promoting com 99.4 3.8E-09 8.3E-14 90.5 29.9 270 95-372 230-508 (564)
61 PRK12370 invasion protein regu 99.4 1E-10 2.2E-15 111.7 23.1 230 162-398 255-502 (553)
62 KOG3785 Uncharacterized conser 99.4 9.5E-10 2.1E-14 92.4 23.9 392 4-402 31-494 (557)
63 PF13041 PPR_2: PPR repeat fam 99.4 3E-12 6.5E-17 78.6 6.5 50 126-175 1-50 (50)
64 KOG1173 Anaphase-promoting com 99.3 5.8E-09 1.3E-13 93.1 28.4 279 96-378 243-532 (611)
65 KOG4162 Predicted calmodulin-b 99.3 1.4E-08 3E-13 94.0 30.5 373 20-398 313-783 (799)
66 PF13041 PPR_2: PPR repeat fam 99.3 9E-12 2E-16 76.5 6.6 50 227-276 1-50 (50)
67 PF12569 NARP1: NMDA receptor- 99.3 1.3E-08 2.9E-13 94.2 29.9 285 105-397 12-333 (517)
68 KOG1156 N-terminal acetyltrans 99.3 4.4E-08 9.4E-13 89.0 31.1 382 6-400 18-470 (700)
69 KOG2047 mRNA splicing factor [ 99.3 1.2E-07 2.5E-12 86.2 33.6 254 141-398 360-687 (835)
70 PF12569 NARP1: NMDA receptor- 99.3 7.8E-09 1.7E-13 95.7 26.5 262 135-402 11-295 (517)
71 KOG2376 Signal recognition par 99.3 2.4E-07 5.2E-12 83.4 34.3 384 2-395 19-517 (652)
72 PRK11189 lipoprotein NlpI; Pro 99.3 5.1E-09 1.1E-13 91.7 24.0 218 142-368 40-269 (296)
73 KOG4318 Bicoid mRNA stability 99.3 1E-09 2.2E-14 102.6 20.0 269 52-350 11-286 (1088)
74 KOG0547 Translocase of outer m 99.3 7E-09 1.5E-13 90.9 23.8 293 100-398 118-491 (606)
75 PF04733 Coatomer_E: Coatomer 99.2 1E-09 2.2E-14 94.7 18.1 248 109-369 13-270 (290)
76 PRK11189 lipoprotein NlpI; Pro 99.2 4.1E-09 8.9E-14 92.3 22.0 215 177-400 40-267 (296)
77 KOG1174 Anaphase-promoting com 99.2 2.2E-07 4.7E-12 80.1 30.9 252 140-397 208-499 (564)
78 KOG0548 Molecular co-chaperone 99.2 3.3E-08 7.1E-13 87.9 26.9 366 4-381 11-472 (539)
79 KOG1125 TPR repeat-containing 99.2 1.4E-09 3E-14 97.2 17.4 220 173-396 295-525 (579)
80 KOG1156 N-terminal acetyltrans 99.2 5.6E-08 1.2E-12 88.3 27.0 388 33-435 11-465 (700)
81 KOG1840 Kinesin light chain [C 99.2 8.7E-09 1.9E-13 94.3 22.2 234 130-363 201-478 (508)
82 COG3063 PilF Tfp pilus assembl 99.2 1.3E-08 2.8E-13 80.7 19.8 197 167-367 39-239 (250)
83 KOG0624 dsRNA-activated protei 99.2 8.2E-08 1.8E-12 80.7 25.3 300 66-372 38-378 (504)
84 KOG2047 mRNA splicing factor [ 99.2 4.1E-07 8.9E-12 82.8 31.5 169 231-402 389-582 (835)
85 KOG0624 dsRNA-activated protei 99.2 1.1E-07 2.4E-12 79.9 25.9 293 100-398 41-370 (504)
86 KOG3785 Uncharacterized conser 99.2 6.5E-08 1.4E-12 81.6 24.7 407 4-441 66-552 (557)
87 KOG2376 Signal recognition par 99.2 1.6E-07 3.5E-12 84.5 28.6 390 35-442 17-488 (652)
88 PF04733 Coatomer_E: Coatomer 99.1 5.8E-09 1.3E-13 90.0 17.6 248 135-398 8-265 (290)
89 COG3063 PilF Tfp pilus assembl 99.1 7.8E-08 1.7E-12 76.4 22.0 193 130-327 37-234 (250)
90 KOG4162 Predicted calmodulin-b 99.1 1.3E-06 2.8E-11 81.4 32.9 398 7-409 239-758 (799)
91 KOG4340 Uncharacterized conser 99.1 3.2E-07 7E-12 75.7 25.7 382 3-398 18-443 (459)
92 cd05804 StaR_like StaR_like; a 99.1 5E-07 1.1E-11 82.1 29.6 262 135-399 50-337 (355)
93 KOG0548 Molecular co-chaperone 99.0 4.6E-07 9.9E-12 80.8 24.0 357 38-399 10-456 (539)
94 cd05804 StaR_like StaR_like; a 99.0 4.2E-06 9.2E-11 76.1 30.6 270 128-400 6-295 (355)
95 PRK04841 transcriptional regul 99.0 2E-06 4.4E-11 88.4 31.6 362 34-399 345-761 (903)
96 PRK10370 formate-dependent nit 99.0 1.7E-07 3.7E-12 76.4 18.4 148 237-399 24-174 (198)
97 KOG3617 WD40 and TPR repeat-co 98.9 2E-06 4.3E-11 80.7 26.9 346 4-397 737-1108(1416)
98 KOG3616 Selective LIM binding 98.9 1.1E-06 2.5E-11 81.3 24.5 259 71-360 620-907 (1636)
99 KOG4340 Uncharacterized conser 98.9 5.4E-07 1.2E-11 74.4 20.1 305 69-394 13-335 (459)
100 PLN02789 farnesyltranstransfer 98.9 5.8E-07 1.2E-11 78.7 21.7 238 131-408 40-310 (320)
101 TIGR03302 OM_YfiO outer membra 98.9 3.4E-07 7.5E-12 77.8 20.0 180 198-398 33-232 (235)
102 PRK15359 type III secretion sy 98.9 6.1E-08 1.3E-12 74.8 13.4 92 305-397 29-120 (144)
103 PRK15359 type III secretion sy 98.9 1.5E-07 3.3E-12 72.5 15.4 125 250-381 14-138 (144)
104 KOG1070 rRNA processing protei 98.9 4.2E-07 9.1E-12 89.6 21.2 204 195-402 1455-1667(1710)
105 KOG3081 Vesicle coat complex C 98.8 5.3E-06 1.1E-10 67.7 22.5 162 200-369 110-276 (299)
106 KOG1125 TPR repeat-containing 98.8 5.1E-07 1.1E-11 81.2 18.2 250 136-391 293-564 (579)
107 PLN02789 farnesyltranstransfer 98.8 6.9E-06 1.5E-10 72.1 25.1 125 99-225 39-169 (320)
108 KOG0985 Vesicle coat protein c 98.8 2.2E-05 4.7E-10 75.6 28.5 239 129-396 1105-1368(1666)
109 COG5010 TadD Flp pilus assembl 98.8 2.1E-06 4.5E-11 70.0 18.7 157 233-393 70-226 (257)
110 PRK10370 formate-dependent nit 98.8 2E-06 4.2E-11 70.2 18.9 155 206-372 24-181 (198)
111 KOG1128 Uncharacterized conser 98.8 2.4E-06 5.2E-11 79.2 20.9 214 167-399 402-617 (777)
112 KOG1128 Uncharacterized conser 98.8 4.6E-06 1E-10 77.4 22.6 191 194-400 394-584 (777)
113 PRK04841 transcriptional regul 98.8 4.9E-05 1.1E-09 78.4 33.1 324 75-398 350-720 (903)
114 KOG3616 Selective LIM binding 98.7 2.4E-05 5.1E-10 72.9 26.6 258 108-400 743-1026(1636)
115 TIGR03302 OM_YfiO outer membra 98.7 1.1E-06 2.4E-11 74.7 17.5 184 161-366 31-234 (235)
116 PRK15179 Vi polysaccharide bio 98.7 3E-06 6.5E-11 81.9 21.4 134 229-367 86-220 (694)
117 KOG1070 rRNA processing protei 98.7 8.2E-06 1.8E-10 80.9 23.8 232 162-395 1457-1697(1710)
118 KOG0985 Vesicle coat protein c 98.7 4.7E-05 1E-09 73.4 27.5 155 212-392 1089-1243(1666)
119 KOG1914 mRNA cleavage and poly 98.7 0.00023 4.9E-09 64.3 29.8 132 232-366 369-503 (656)
120 TIGR02552 LcrH_SycD type III s 98.7 7.1E-07 1.5E-11 68.5 12.9 97 301-398 18-114 (135)
121 KOG1914 mRNA cleavage and poly 98.7 0.00027 5.8E-09 63.8 30.5 120 280-401 347-467 (656)
122 PRK14720 transcript cleavage f 98.7 2.3E-05 4.9E-10 76.9 25.4 236 65-346 30-268 (906)
123 KOG3617 WD40 and TPR repeat-co 98.7 6E-05 1.3E-09 71.2 26.5 160 40-224 810-993 (1416)
124 KOG3081 Vesicle coat complex C 98.6 1.8E-05 4E-10 64.6 20.3 245 136-397 16-270 (299)
125 KOG2053 Mitochondrial inherita 98.6 0.00051 1.1E-08 65.8 34.0 215 5-225 19-253 (932)
126 COG4783 Putative Zn-dependent 98.6 4.7E-05 1E-09 67.8 24.4 114 276-392 318-431 (484)
127 COG5010 TadD Flp pilus assembl 98.6 5.9E-06 1.3E-10 67.4 17.5 137 261-400 63-199 (257)
128 COG4783 Putative Zn-dependent 98.6 1.8E-05 4E-10 70.3 21.9 144 233-399 310-455 (484)
129 PF12854 PPR_1: PPR repeat 98.6 5.6E-08 1.2E-12 53.4 4.1 32 295-326 2-33 (34)
130 PF12854 PPR_1: PPR repeat 98.6 4.7E-08 1E-12 53.7 3.8 34 258-291 1-34 (34)
131 PRK14720 transcript cleavage f 98.6 1.6E-05 3.5E-10 77.9 22.6 231 127-381 30-269 (906)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.1E-06 4.5E-11 76.8 15.2 125 266-396 171-295 (395)
133 KOG1127 TPR repeat-containing 98.6 2.4E-05 5.1E-10 75.3 21.7 373 11-394 474-909 (1238)
134 PRK15363 pathogenicity island 98.6 1.9E-06 4.1E-11 65.4 11.8 96 302-398 37-132 (157)
135 KOG3060 Uncharacterized conser 98.6 3.6E-05 7.9E-10 62.4 19.4 134 239-376 96-232 (289)
136 TIGR02552 LcrH_SycD type III s 98.5 4.8E-06 1E-10 63.8 14.4 116 251-371 5-121 (135)
137 KOG1127 TPR repeat-containing 98.5 8.6E-06 1.9E-10 78.1 17.7 324 67-397 493-878 (1238)
138 PRK15179 Vi polysaccharide bio 98.5 9E-05 2E-09 72.0 23.2 146 194-343 82-230 (694)
139 PF09976 TPR_21: Tetratricopep 98.4 1.5E-05 3.3E-10 61.7 14.2 127 266-394 14-143 (145)
140 cd00189 TPR Tetratricopeptide 98.4 7E-06 1.5E-10 58.3 11.2 94 303-397 3-96 (100)
141 KOG3060 Uncharacterized conser 98.3 0.00014 3.1E-09 59.1 18.0 164 232-400 55-222 (289)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2E-05 4.4E-10 70.6 13.8 121 103-225 175-295 (395)
143 TIGR02795 tol_pal_ybgF tol-pal 98.3 3.2E-05 6.8E-10 57.7 12.9 92 305-397 7-104 (119)
144 PF12895 Apc3: Anaphase-promot 98.3 2E-06 4.2E-11 59.6 5.4 81 313-394 2-83 (84)
145 TIGR00756 PPR pentatricopeptid 98.2 2.7E-06 5.9E-11 47.5 4.5 33 130-162 2-34 (35)
146 PLN03088 SGT1, suppressor of 98.2 2.7E-05 5.8E-10 70.1 12.8 109 271-382 9-117 (356)
147 PF13812 PPR_3: Pentatricopept 98.2 3.3E-06 7.1E-11 46.8 4.3 33 129-161 2-34 (34)
148 TIGR02795 tol_pal_ybgF tol-pal 98.2 9E-05 1.9E-09 55.2 13.2 107 266-372 4-113 (119)
149 TIGR00756 PPR pentatricopeptid 98.2 4.6E-06 1E-10 46.5 4.6 33 231-263 2-34 (35)
150 PLN03088 SGT1, suppressor of 98.2 7.2E-05 1.6E-09 67.3 14.6 100 235-338 8-107 (356)
151 PF13414 TPR_11: TPR repeat; P 98.2 1.2E-05 2.5E-10 53.3 7.1 64 334-397 2-66 (69)
152 PF13432 TPR_16: Tetratricopep 98.2 1.5E-05 3.3E-10 52.0 7.5 60 308-368 5-64 (65)
153 PF09976 TPR_21: Tetratricopep 98.1 0.00022 4.7E-09 55.2 15.0 126 232-361 15-144 (145)
154 KOG0550 Molecular chaperone (D 98.1 0.00023 5E-09 62.0 16.1 158 237-400 177-352 (486)
155 cd00189 TPR Tetratricopeptide 98.1 5E-05 1.1E-09 53.7 10.6 95 269-366 5-99 (100)
156 KOG0553 TPR repeat-containing 98.1 4.5E-05 9.7E-10 63.7 10.7 109 274-386 91-200 (304)
157 PF13812 PPR_3: Pentatricopept 98.1 8E-06 1.7E-10 45.2 4.5 33 230-262 2-34 (34)
158 KOG2053 Mitochondrial inherita 98.1 0.0039 8.5E-08 60.0 24.3 102 109-214 21-126 (932)
159 COG4235 Cytochrome c biogenesi 98.1 0.00028 6.1E-09 59.4 14.9 108 297-405 153-263 (287)
160 PRK02603 photosystem I assembl 98.1 0.00013 2.8E-09 58.4 12.8 85 300-384 35-121 (172)
161 PF05843 Suf: Suppressor of fo 98.0 0.0003 6.6E-09 61.0 15.3 136 230-369 2-141 (280)
162 PF07079 DUF1347: Protein of u 98.0 0.0091 2E-07 53.2 30.8 381 5-396 16-522 (549)
163 PRK02603 photosystem I assembl 98.0 0.00034 7.4E-09 56.0 14.4 127 231-383 37-165 (172)
164 PF13432 TPR_16: Tetratricopep 98.0 2.2E-05 4.7E-10 51.2 6.0 58 341-398 3-60 (65)
165 KOG0553 TPR repeat-containing 98.0 3.9E-05 8.6E-10 64.0 8.7 88 309-397 90-177 (304)
166 PF12688 TPR_5: Tetratrico pep 98.0 0.00025 5.4E-09 52.1 11.9 90 306-395 7-101 (120)
167 CHL00033 ycf3 photosystem I as 98.0 0.00016 3.5E-09 57.7 12.0 97 299-395 34-139 (168)
168 PF13414 TPR_11: TPR repeat; P 97.9 4.5E-05 9.8E-10 50.4 6.9 67 299-366 2-69 (69)
169 PF12895 Apc3: Anaphase-promot 97.9 3.4E-05 7.3E-10 53.3 6.4 81 278-360 3-83 (84)
170 PF14559 TPR_19: Tetratricopep 97.9 3E-05 6.5E-10 51.1 5.4 54 313-367 4-57 (68)
171 PF14938 SNAP: Soluble NSF att 97.9 0.00075 1.6E-08 58.8 15.5 204 131-363 38-265 (282)
172 PRK15331 chaperone protein Sic 97.9 0.00029 6.2E-09 54.0 10.8 89 308-397 45-133 (165)
173 PF14938 SNAP: Soluble NSF att 97.9 0.0022 4.8E-08 55.9 17.9 146 235-395 100-263 (282)
174 PF01535 PPR: PPR repeat; Int 97.9 2.4E-05 5.3E-10 42.1 3.6 29 130-158 2-30 (31)
175 PRK10153 DNA-binding transcrip 97.9 0.0017 3.7E-08 61.2 17.9 67 301-369 421-487 (517)
176 PF05843 Suf: Suppressor of fo 97.8 0.00034 7.4E-09 60.7 11.8 131 265-398 2-136 (280)
177 PF14559 TPR_19: Tetratricopep 97.8 4.8E-05 1E-09 50.1 5.0 53 346-398 2-54 (68)
178 PF10037 MRP-S27: Mitochondria 97.8 0.00033 7.2E-09 63.3 11.7 73 231-304 105-177 (429)
179 KOG2280 Vacuolar assembly/sort 97.8 0.037 8E-07 52.6 26.6 115 261-394 681-795 (829)
180 PF08579 RPM2: Mitochondrial r 97.8 0.00049 1.1E-08 48.6 9.8 79 132-210 29-116 (120)
181 PF01535 PPR: PPR repeat; Int 97.8 4.4E-05 9.5E-10 41.1 3.6 29 231-259 2-30 (31)
182 PF13371 TPR_9: Tetratricopept 97.7 0.00022 4.7E-09 47.7 7.7 60 309-369 4-63 (73)
183 PRK15363 pathogenicity island 97.7 0.00075 1.6E-08 51.5 11.1 95 267-365 38-133 (157)
184 PF13371 TPR_9: Tetratricopept 97.7 0.00017 3.7E-09 48.2 7.0 58 342-399 2-59 (73)
185 COG4700 Uncharacterized protei 97.7 0.0021 4.5E-08 49.9 13.3 155 238-396 65-220 (251)
186 PF10037 MRP-S27: Mitochondria 97.7 0.0005 1.1E-08 62.2 11.5 116 96-211 65-186 (429)
187 CHL00033 ycf3 photosystem I as 97.7 0.0014 3E-08 52.3 12.9 101 266-367 37-152 (168)
188 PRK10153 DNA-binding transcrip 97.7 0.0031 6.8E-08 59.5 16.8 136 259-398 332-482 (517)
189 COG4700 Uncharacterized protei 97.7 0.016 3.4E-07 45.3 17.4 134 228-363 88-221 (251)
190 PF08579 RPM2: Mitochondrial r 97.7 0.00083 1.8E-08 47.5 9.6 77 234-311 30-115 (120)
191 PF12688 TPR_5: Tetratrico pep 97.7 0.0015 3.4E-08 47.9 11.5 93 133-225 6-102 (120)
192 PRK10866 outer membrane biogen 97.6 0.03 6.6E-07 47.4 22.8 65 127-193 31-99 (243)
193 KOG2041 WD40 repeat protein [G 97.6 0.065 1.4E-06 50.7 24.2 69 79-152 747-820 (1189)
194 KOG2796 Uncharacterized conser 97.6 0.0058 1.3E-07 50.3 14.9 138 230-369 178-320 (366)
195 PRK10803 tol-pal system protei 97.6 0.002 4.4E-08 54.9 12.4 85 311-396 154-244 (263)
196 PRK10866 outer membrane biogen 97.5 0.012 2.7E-07 49.7 16.5 57 36-94 38-97 (243)
197 PF03704 BTAD: Bacterial trans 97.5 0.0023 5E-08 49.6 11.2 70 336-405 63-137 (146)
198 KOG1130 Predicted G-alpha GTPa 97.5 0.0025 5.5E-08 55.8 11.9 132 265-396 196-342 (639)
199 KOG1538 Uncharacterized conser 97.4 0.021 4.5E-07 53.3 17.9 21 343-363 825-845 (1081)
200 KOG0543 FKBP-type peptidyl-pro 97.4 0.0037 8E-08 54.9 12.5 97 300-397 257-354 (397)
201 COG4235 Cytochrome c biogenesi 97.4 0.017 3.7E-07 48.9 15.7 106 261-369 153-261 (287)
202 KOG2796 Uncharacterized conser 97.4 0.027 5.9E-07 46.6 16.2 128 131-258 180-315 (366)
203 PRK10803 tol-pal system protei 97.4 0.0057 1.2E-07 52.2 13.1 102 265-369 144-251 (263)
204 KOG0550 Molecular chaperone (D 97.4 0.039 8.4E-07 48.8 17.9 54 173-227 179-232 (486)
205 PF06239 ECSIT: Evolutionarily 97.4 0.0021 4.5E-08 51.6 9.3 88 126-213 45-153 (228)
206 PF13281 DUF4071: Domain of un 97.3 0.069 1.5E-06 47.6 19.5 164 203-369 146-339 (374)
207 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0014 3.1E-08 58.8 9.2 98 299-401 74-177 (453)
208 PF13525 YfiO: Outer membrane 97.3 0.0095 2.1E-07 49.1 13.6 50 341-390 147-199 (203)
209 KOG2041 WD40 repeat protein [G 97.3 0.061 1.3E-06 50.8 19.6 305 62-397 688-1049(1189)
210 PF13428 TPR_14: Tetratricopep 97.3 0.00063 1.4E-08 40.0 4.6 42 336-377 2-43 (44)
211 PF04840 Vps16_C: Vps16, C-ter 97.3 0.12 2.7E-06 45.6 24.9 105 232-357 180-284 (319)
212 PF04840 Vps16_C: Vps16, C-ter 97.2 0.13 2.8E-06 45.4 26.1 113 264-396 177-289 (319)
213 PF06239 ECSIT: Evolutionarily 97.2 0.0055 1.2E-07 49.3 10.4 104 226-349 44-152 (228)
214 PF13424 TPR_12: Tetratricopep 97.2 0.0011 2.4E-08 44.9 5.8 61 336-396 6-73 (78)
215 COG3898 Uncharacterized membra 97.2 0.13 2.9E-06 45.2 27.0 284 100-400 85-394 (531)
216 PF13431 TPR_17: Tetratricopep 97.2 0.00037 8.1E-09 38.1 2.7 33 358-390 2-34 (34)
217 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.16 3.5E-06 45.6 28.3 129 265-396 398-529 (660)
218 KOG1130 Predicted G-alpha GTPa 97.2 0.011 2.5E-07 51.9 12.4 129 164-292 196-343 (639)
219 KOG1538 Uncharacterized conser 97.1 0.16 3.5E-06 47.7 19.5 109 209-329 727-846 (1081)
220 PRK11906 transcriptional regul 96.9 0.038 8.2E-07 50.1 13.8 116 279-395 273-398 (458)
221 PF12921 ATP13: Mitochondrial 96.9 0.017 3.6E-07 43.0 9.9 50 296-345 48-98 (126)
222 PF13525 YfiO: Outer membrane 96.8 0.21 4.6E-06 41.1 19.3 60 133-192 10-71 (203)
223 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.02 4.4E-07 51.7 11.4 99 262-367 73-177 (453)
224 PF12921 ATP13: Mitochondrial 96.8 0.021 4.5E-07 42.5 9.7 54 259-312 47-100 (126)
225 KOG4555 TPR repeat-containing 96.8 0.025 5.5E-07 41.3 9.5 89 310-399 53-145 (175)
226 PF03704 BTAD: Bacterial trans 96.7 0.06 1.3E-06 41.6 12.3 61 302-363 64-124 (146)
227 PF13424 TPR_12: Tetratricopep 96.6 0.0036 7.8E-08 42.3 4.4 64 300-363 5-74 (78)
228 PF09205 DUF1955: Domain of un 96.6 0.19 4.1E-06 37.0 14.5 140 240-401 13-152 (161)
229 KOG2610 Uncharacterized conser 96.5 0.13 2.8E-06 44.4 13.2 156 241-400 115-278 (491)
230 COG1729 Uncharacterized protei 96.5 0.093 2E-06 44.1 12.2 94 302-397 144-243 (262)
231 PRK15331 chaperone protein Sic 96.5 0.14 3E-06 39.6 12.2 88 273-363 46-133 (165)
232 PF13281 DUF4071: Domain of un 96.4 0.62 1.3E-05 41.8 17.7 166 231-399 143-335 (374)
233 PF13512 TPR_18: Tetratricopep 96.4 0.13 2.8E-06 38.8 11.6 19 351-369 115-133 (142)
234 KOG2280 Vacuolar assembly/sort 96.3 1.1 2.4E-05 43.3 25.8 109 231-359 686-794 (829)
235 COG4785 NlpI Lipoprotein NlpI, 96.2 0.19 4.2E-06 40.5 12.2 152 242-400 78-268 (297)
236 KOG0543 FKBP-type peptidyl-pro 96.2 0.03 6.5E-07 49.5 8.5 63 336-398 258-320 (397)
237 PF07035 Mic1: Colon cancer-as 96.2 0.2 4.4E-06 39.1 12.1 32 16-47 15-46 (167)
238 COG3118 Thioredoxin domain-con 96.2 0.28 6E-06 41.8 13.6 122 273-397 143-264 (304)
239 COG0457 NrfG FOG: TPR repeat [ 96.2 0.64 1.4E-05 38.8 27.3 86 310-396 177-263 (291)
240 smart00299 CLH Clathrin heavy 96.1 0.2 4.4E-06 38.4 12.0 127 33-175 10-137 (140)
241 PF10300 DUF3808: Protein of u 96.1 0.81 1.8E-05 43.2 17.9 164 232-398 191-376 (468)
242 PF13512 TPR_18: Tetratricopep 96.0 0.45 9.7E-06 36.0 12.9 60 310-369 20-81 (142)
243 PF07079 DUF1347: Protein of u 96.0 1.1 2.5E-05 40.6 24.5 347 6-361 90-521 (549)
244 KOG4234 TPR repeat-containing 95.9 0.25 5.5E-06 39.3 11.2 124 273-399 104-234 (271)
245 COG0457 NrfG FOG: TPR repeat [ 95.9 0.88 1.9E-05 38.0 26.3 223 142-367 37-268 (291)
246 KOG2610 Uncharacterized conser 95.8 0.17 3.7E-06 43.6 10.7 119 276-396 115-236 (491)
247 PF04053 Coatomer_WDAD: Coatom 95.8 0.97 2.1E-05 42.1 16.5 133 66-223 295-427 (443)
248 PF07719 TPR_2: Tetratricopept 95.7 0.042 9E-07 29.8 5.0 33 336-368 2-34 (34)
249 COG3898 Uncharacterized membra 95.7 1.4 3E-05 39.2 28.4 275 79-363 97-391 (531)
250 PF13428 TPR_14: Tetratricopep 95.7 0.039 8.4E-07 32.2 5.0 40 302-342 3-42 (44)
251 PF00515 TPR_1: Tetratricopept 95.7 0.032 6.9E-07 30.4 4.3 32 336-367 2-33 (34)
252 COG1729 Uncharacterized protei 95.6 0.68 1.5E-05 39.1 13.5 103 266-371 144-251 (262)
253 PRK11619 lytic murein transgly 95.6 2.6 5.7E-05 41.5 29.7 117 278-396 255-373 (644)
254 KOG3941 Intermediate in Toll s 95.6 0.14 3.1E-06 43.0 9.3 89 126-214 65-174 (406)
255 COG4649 Uncharacterized protei 95.5 0.4 8.8E-06 37.2 10.8 123 240-363 69-195 (221)
256 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.9 4.2E-05 39.1 27.3 133 231-368 399-535 (660)
257 PF00637 Clathrin: Region in C 95.5 0.011 2.3E-07 45.6 2.5 85 36-124 13-97 (143)
258 PF04053 Coatomer_WDAD: Coatom 95.5 0.94 2E-05 42.1 15.3 159 136-326 269-428 (443)
259 KOG3941 Intermediate in Toll s 95.4 0.21 4.5E-06 42.1 9.8 98 217-315 53-173 (406)
260 KOG1920 IkappaB kinase complex 95.4 2.2 4.8E-05 43.7 18.1 117 200-327 910-1026(1265)
261 KOG4555 TPR repeat-containing 95.4 0.45 9.7E-06 35.0 10.1 92 274-367 53-147 (175)
262 KOG1941 Acetylcholine receptor 95.3 0.48 1E-05 41.5 11.8 47 138-184 16-64 (518)
263 KOG4234 TPR repeat-containing 95.3 0.23 5.1E-06 39.5 9.1 90 308-398 103-197 (271)
264 KOG1464 COP9 signalosome, subu 95.2 1.7 3.6E-05 36.6 14.5 159 232-390 68-252 (440)
265 PF08631 SPO22: Meiosis protei 95.2 2 4.3E-05 37.4 21.9 161 231-395 86-272 (278)
266 COG3629 DnrI DNA-binding trans 95.1 0.16 3.5E-06 43.4 8.6 63 300-363 153-215 (280)
267 PF02259 FAT: FAT domain; Int 95.1 2.4 5.3E-05 38.3 21.0 150 228-382 145-305 (352)
268 PF10300 DUF3808: Protein of u 95.1 0.67 1.5E-05 43.7 13.6 145 248-398 176-334 (468)
269 PF04184 ST7: ST7 protein; In 95.1 2.8 6E-05 38.8 18.2 54 273-326 268-321 (539)
270 PRK11906 transcriptional regul 95.1 2.2 4.8E-05 39.2 16.0 160 230-393 252-431 (458)
271 KOG1585 Protein required for f 95.1 1.6 3.6E-05 36.1 16.5 206 130-358 33-250 (308)
272 PF04184 ST7: ST7 protein; In 94.9 1.3 2.8E-05 40.9 13.8 56 340-395 264-321 (539)
273 COG3118 Thioredoxin domain-con 94.8 2.4 5.1E-05 36.4 17.0 167 216-386 121-289 (304)
274 COG2909 MalT ATP-dependent tra 94.8 4.9 0.00011 40.0 26.1 219 173-394 425-684 (894)
275 COG4105 ComL DNA uptake lipopr 94.7 2.2 4.8E-05 35.8 18.3 57 340-396 172-231 (254)
276 KOG1941 Acetylcholine receptor 94.7 0.34 7.3E-06 42.4 9.3 193 99-291 45-273 (518)
277 KOG4648 Uncharacterized conser 94.7 0.18 3.9E-06 43.6 7.6 93 273-369 106-199 (536)
278 PF09613 HrpB1_HrpK: Bacterial 94.5 1.2 2.5E-05 34.5 11.0 120 264-390 7-130 (160)
279 COG4105 ComL DNA uptake lipopr 94.4 2.6 5.6E-05 35.4 19.9 170 198-369 35-238 (254)
280 PF13176 TPR_7: Tetratricopept 94.4 0.11 2.3E-06 28.7 4.0 24 338-361 2-25 (36)
281 KOG1258 mRNA processing protei 94.3 4.8 0.0001 38.1 28.2 363 12-384 62-490 (577)
282 PRK09687 putative lyase; Provi 94.2 3.4 7.4E-05 36.0 25.5 62 298-366 204-265 (280)
283 smart00299 CLH Clathrin heavy 94.1 2 4.3E-05 32.8 15.7 125 232-379 10-135 (140)
284 KOG1585 Protein required for f 94.1 3 6.4E-05 34.7 16.0 203 165-392 33-250 (308)
285 PF08631 SPO22: Meiosis protei 94.0 3.8 8.2E-05 35.7 24.2 221 139-362 4-273 (278)
286 TIGR02561 HrpB1_HrpK type III 93.9 0.64 1.4E-05 35.3 8.3 84 300-385 7-94 (153)
287 KOG2114 Vacuolar assembly/sort 93.8 7.7 0.00017 38.4 22.6 138 5-154 378-516 (933)
288 PF02284 COX5A: Cytochrome c o 93.8 1.6 3.5E-05 30.6 10.2 60 317-376 27-86 (108)
289 KOG1586 Protein required for f 93.7 3.4 7.4E-05 34.1 14.0 108 276-383 85-202 (288)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 93.7 0.82 1.8E-05 31.6 7.8 62 315-376 22-83 (103)
291 PF10602 RPN7: 26S proteasome 93.7 1.8 4E-05 34.6 11.3 95 301-395 37-139 (177)
292 PF13176 TPR_7: Tetratricopept 93.7 0.18 4E-06 27.8 4.0 26 371-396 1-26 (36)
293 PF13181 TPR_8: Tetratricopept 93.7 0.21 4.6E-06 26.9 4.3 30 337-366 3-32 (34)
294 PF13374 TPR_10: Tetratricopep 93.6 0.21 4.5E-06 28.5 4.5 28 336-363 3-30 (42)
295 KOG2114 Vacuolar assembly/sort 93.6 8.4 0.00018 38.2 22.8 167 3-189 342-516 (933)
296 KOG1258 mRNA processing protei 93.4 7.3 0.00016 36.9 25.1 126 30-157 45-180 (577)
297 KOG0890 Protein kinase of the 93.4 16 0.00036 40.9 23.2 313 71-400 1388-1733(2382)
298 PF09205 DUF1955: Domain of un 93.0 2.8 6.1E-05 31.2 13.8 59 234-293 91-149 (161)
299 COG2976 Uncharacterized protei 93.0 3.9 8.6E-05 32.7 13.6 114 247-366 70-190 (207)
300 TIGR02561 HrpB1_HrpK type III 93.0 2.1 4.6E-05 32.6 9.7 63 263-330 6-74 (153)
301 KOG4570 Uncharacterized conser 92.9 1.1 2.4E-05 38.5 9.1 101 192-293 58-164 (418)
302 PF10602 RPN7: 26S proteasome 92.9 1.5 3.2E-05 35.2 9.6 64 129-192 37-102 (177)
303 PF13431 TPR_17: Tetratricopep 92.7 0.14 3E-06 27.9 2.5 30 325-355 4-33 (34)
304 PF07035 Mic1: Colon cancer-as 92.6 4.2 9.1E-05 32.0 12.3 133 51-191 14-148 (167)
305 KOG1920 IkappaB kinase complex 92.5 15 0.00032 38.2 21.0 89 261-362 932-1026(1265)
306 COG3629 DnrI DNA-binding trans 92.5 0.92 2E-05 38.9 8.3 60 337-396 155-214 (280)
307 PF02259 FAT: FAT domain; Int 92.5 8 0.00017 35.0 23.4 64 195-258 143-213 (352)
308 PRK15180 Vi polysaccharide bio 92.2 1.7 3.7E-05 39.8 9.9 121 277-400 302-422 (831)
309 PF13174 TPR_6: Tetratricopept 92.0 0.45 9.9E-06 25.2 4.2 27 341-367 6-32 (33)
310 PF09613 HrpB1_HrpK: Bacterial 91.8 5 0.00011 31.1 13.1 89 237-330 18-107 (160)
311 KOG2066 Vacuolar assembly/sort 91.3 16 0.00035 36.0 22.5 150 74-229 364-536 (846)
312 PF00515 TPR_1: Tetratricopept 91.2 0.53 1.2E-05 25.3 3.9 27 130-156 3-29 (34)
313 PF00637 Clathrin: Region in C 91.1 0.34 7.4E-06 37.2 4.1 128 1-143 13-140 (143)
314 COG1747 Uncharacterized N-term 91.0 14 0.00029 34.6 21.9 180 160-347 63-251 (711)
315 PF07721 TPR_4: Tetratricopept 90.9 0.44 9.5E-06 23.9 3.1 23 371-393 3-25 (26)
316 KOG4648 Uncharacterized conser 90.9 0.8 1.7E-05 39.8 6.3 90 307-397 104-193 (536)
317 KOG1550 Extracellular protein 90.7 17 0.00037 35.3 16.0 153 241-400 261-428 (552)
318 PF07719 TPR_2: Tetratricopept 90.6 0.64 1.4E-05 24.9 3.9 29 370-398 2-30 (34)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 90.5 2.2 4.7E-05 29.6 6.8 62 244-307 22-83 (103)
320 KOG1308 Hsp70-interacting prot 90.4 0.2 4.3E-06 43.4 2.3 91 312-403 126-216 (377)
321 KOG0276 Vesicle coat complex C 90.4 6.2 0.00013 37.5 11.7 150 209-394 597-746 (794)
322 COG1747 Uncharacterized N-term 90.1 17 0.00036 34.1 22.6 180 195-381 63-251 (711)
323 PF02284 COX5A: Cytochrome c o 90.1 2.6 5.6E-05 29.6 6.9 59 247-307 28-86 (108)
324 PRK09687 putative lyase; Provi 90.0 12 0.00027 32.5 25.1 137 197-346 141-278 (280)
325 KOG2396 HAT (Half-A-TPR) repea 89.9 6.1 0.00013 36.6 11.1 92 283-377 90-182 (568)
326 PF11207 DUF2989: Protein of u 89.7 3.8 8.3E-05 33.1 8.7 78 310-389 117-198 (203)
327 KOG4570 Uncharacterized conser 89.6 7.1 0.00015 33.9 10.6 93 234-329 69-164 (418)
328 KOG2066 Vacuolar assembly/sort 89.5 23 0.0005 35.0 24.2 143 5-155 366-532 (846)
329 PF06552 TOM20_plant: Plant sp 89.2 3 6.5E-05 33.0 7.6 31 352-382 52-82 (186)
330 PF14561 TPR_20: Tetratricopep 89.2 0.52 1.1E-05 32.7 3.3 53 332-384 19-73 (90)
331 KOG0276 Vesicle coat complex C 89.0 9.4 0.0002 36.4 11.7 73 175-258 649-721 (794)
332 PF13929 mRNA_stabil: mRNA sta 88.9 14 0.00031 31.8 16.0 130 214-343 144-286 (292)
333 PF13374 TPR_10: Tetratricopep 88.9 1.1 2.3E-05 25.4 4.1 29 370-398 3-31 (42)
334 PRK15180 Vi polysaccharide bio 88.3 4.9 0.00011 36.9 9.4 123 240-367 300-423 (831)
335 COG4785 NlpI Lipoprotein NlpI, 88.2 13 0.00029 30.5 15.3 177 179-366 81-268 (297)
336 PF13174 TPR_6: Tetratricopept 88.1 0.94 2E-05 24.0 3.3 28 371-398 2-29 (33)
337 COG2976 Uncharacterized protei 88.0 13 0.00027 30.0 12.6 93 306-399 95-189 (207)
338 PF13170 DUF4003: Protein of u 87.8 19 0.0004 31.7 16.1 134 144-307 78-224 (297)
339 COG4649 Uncharacterized protei 87.7 12 0.00026 29.5 15.8 121 208-329 68-196 (221)
340 KOG4077 Cytochrome c oxidase, 87.5 4.9 0.00011 29.5 7.2 58 318-375 67-124 (149)
341 PF13181 TPR_8: Tetratricopept 87.5 1.8 3.9E-05 23.1 4.2 29 370-398 2-30 (34)
342 smart00028 TPR Tetratricopepti 87.5 1.3 2.7E-05 22.7 3.6 25 340-364 6-30 (34)
343 PRK10941 hypothetical protein; 87.2 5.2 0.00011 34.5 8.7 60 338-397 184-243 (269)
344 COG3947 Response regulator con 86.9 19 0.00042 31.0 15.5 59 338-396 282-340 (361)
345 KOG0545 Aryl-hydrocarbon recep 86.8 11 0.00023 31.6 9.6 95 272-367 186-296 (329)
346 KOG1550 Extracellular protein 86.0 36 0.00078 33.2 22.5 274 113-399 228-539 (552)
347 PF11207 DUF2989: Protein of u 85.5 12 0.00027 30.3 9.4 75 143-218 121-198 (203)
348 PF13170 DUF4003: Protein of u 85.4 25 0.00055 30.9 19.8 121 245-367 78-214 (297)
349 COG4455 ImpE Protein of avirul 84.7 7.1 0.00015 32.0 7.6 77 266-344 3-81 (273)
350 TIGR03504 FimV_Cterm FimV C-te 84.5 2.5 5.5E-05 24.6 3.8 27 373-399 3-29 (44)
351 KOG4642 Chaperone-dependent E3 84.4 5.3 0.00011 33.2 6.9 118 274-396 20-144 (284)
352 KOG4507 Uncharacterized conser 84.3 6.1 0.00013 37.4 8.0 99 276-378 619-719 (886)
353 KOG0376 Serine-threonine phosp 84.2 1.2 2.6E-05 40.8 3.5 99 271-373 11-110 (476)
354 KOG1464 COP9 signalosome, subu 84.0 26 0.00055 29.9 17.0 89 202-291 149-258 (440)
355 PRK10941 hypothetical protein; 83.7 20 0.00043 31.0 10.5 68 304-372 185-252 (269)
356 KOG2471 TPR repeat-containing 83.3 29 0.00064 32.3 11.6 103 207-312 249-381 (696)
357 PF14853 Fis1_TPR_C: Fis1 C-te 83.2 3.5 7.5E-05 25.2 4.3 32 340-371 6-37 (53)
358 COG4455 ImpE Protein of avirul 83.0 6.9 0.00015 32.0 6.9 75 302-377 3-80 (273)
359 TIGR03504 FimV_Cterm FimV C-te 82.1 3.7 8E-05 23.9 3.9 25 134-158 5-29 (44)
360 TIGR02508 type_III_yscG type I 81.4 16 0.00035 25.7 10.0 59 105-166 47-105 (115)
361 PF09986 DUF2225: Uncharacteri 80.2 15 0.00032 30.5 8.4 65 336-400 119-196 (214)
362 PF10345 Cohesin_load: Cohesin 79.9 67 0.0014 31.9 24.0 49 276-324 373-428 (608)
363 PF07163 Pex26: Pex26 protein; 79.1 29 0.00063 29.8 9.5 83 205-287 90-181 (309)
364 KOG0545 Aryl-hydrocarbon recep 78.9 38 0.00083 28.5 10.0 51 344-394 239-289 (329)
365 PF07163 Pex26: Pex26 protein; 77.7 31 0.00068 29.6 9.3 85 135-221 90-181 (309)
366 PF14669 Asp_Glu_race_2: Putat 77.6 35 0.00077 27.4 13.8 177 24-222 2-205 (233)
367 PF10579 Rapsyn_N: Rapsyn N-te 77.5 7.2 0.00016 26.0 4.5 44 347-390 18-64 (80)
368 KOG0551 Hsp90 co-chaperone CNS 77.5 29 0.00063 30.6 9.2 94 302-395 83-179 (390)
369 cd08819 CARD_MDA5_2 Caspase ac 77.0 19 0.00041 24.6 6.5 65 183-249 22-86 (88)
370 PF10579 Rapsyn_N: Rapsyn N-te 77.0 7.8 0.00017 25.8 4.6 46 276-321 18-64 (80)
371 PHA02875 ankyrin repeat protei 76.3 66 0.0014 29.9 16.7 70 18-92 18-91 (413)
372 KOG2396 HAT (Half-A-TPR) repea 76.3 70 0.0015 30.2 31.6 240 147-396 301-557 (568)
373 KOG3364 Membrane protein invol 76.3 31 0.00066 26.0 10.3 28 341-368 77-104 (149)
374 cd08819 CARD_MDA5_2 Caspase ac 76.0 9.1 0.0002 26.1 4.8 38 78-116 48-85 (88)
375 KOG2297 Predicted translation 76.0 53 0.0012 28.7 11.7 20 300-319 321-340 (412)
376 KOG0890 Protein kinase of the 75.9 1.6E+02 0.0034 34.0 24.7 145 38-187 1391-1542(2382)
377 PRK13800 putative oxidoreducta 75.7 1.1E+02 0.0024 32.1 26.7 253 118-395 625-878 (897)
378 COG3947 Response regulator con 75.7 18 0.00038 31.2 7.4 61 302-363 281-341 (361)
379 smart00386 HAT HAT (Half-A-TPR 75.6 8 0.00017 20.0 4.0 28 349-376 1-28 (33)
380 KOG4077 Cytochrome c oxidase, 75.2 21 0.00046 26.4 6.7 59 247-307 67-125 (149)
381 PF14561 TPR_20: Tetratricopep 74.6 26 0.00055 24.3 8.8 31 299-329 21-51 (90)
382 PF06552 TOM20_plant: Plant sp 74.6 42 0.00091 26.8 9.8 77 318-402 53-140 (186)
383 PF08424 NRDE-2: NRDE-2, neces 74.3 65 0.0014 28.8 17.5 117 281-400 48-185 (321)
384 KOG1586 Protein required for f 73.9 52 0.0011 27.6 16.6 59 309-367 163-227 (288)
385 PF11846 DUF3366: Domain of un 73.1 24 0.00051 28.7 7.8 34 333-366 142-175 (193)
386 PF04190 DUF410: Protein of un 73.0 61 0.0013 27.9 16.3 29 196-224 88-116 (260)
387 TIGR02508 type_III_yscG type I 73.0 30 0.00066 24.4 9.4 85 179-267 21-105 (115)
388 KOG2422 Uncharacterized conser 72.8 93 0.002 30.0 11.8 169 274-445 248-452 (665)
389 KOG4507 Uncharacterized conser 72.4 28 0.00061 33.3 8.5 133 261-398 568-705 (886)
390 PF04190 DUF410: Protein of un 72.1 64 0.0014 27.8 13.3 27 66-92 90-116 (260)
391 PF11846 DUF3366: Domain of un 72.0 21 0.00046 29.0 7.2 55 275-329 119-173 (193)
392 COG5191 Uncharacterized conser 72.0 12 0.00027 32.4 5.7 82 295-377 102-184 (435)
393 PF12862 Apc5: Anaphase-promot 71.9 20 0.00043 25.0 6.1 52 346-397 9-69 (94)
394 KOG2063 Vacuolar assembly/sort 71.6 1.3E+02 0.0028 31.1 13.9 164 231-397 506-712 (877)
395 PRK11619 lytic murein transgly 71.3 1.2E+02 0.0025 30.4 30.2 23 375-397 413-435 (644)
396 PRK13342 recombination factor 70.5 94 0.002 29.0 12.1 43 131-173 230-275 (413)
397 PF14863 Alkyl_sulf_dimr: Alky 70.0 35 0.00076 26.1 7.3 63 317-385 58-120 (141)
398 PF13762 MNE1: Mitochondrial s 69.6 49 0.0011 25.4 8.3 81 131-211 42-128 (145)
399 KOG3824 Huntingtin interacting 69.5 20 0.00043 31.2 6.4 59 346-408 127-185 (472)
400 PRK13342 recombination factor 68.7 1E+02 0.0022 28.8 16.1 22 242-263 243-264 (413)
401 PF12862 Apc5: Anaphase-promot 68.6 37 0.0008 23.7 8.2 55 311-365 9-71 (94)
402 PF10366 Vps39_1: Vacuolar sor 68.6 42 0.00091 24.2 7.7 27 130-156 41-67 (108)
403 COG5159 RPN6 26S proteasome re 67.9 81 0.0018 27.3 10.6 32 235-266 9-40 (421)
404 COG4976 Predicted methyltransf 67.5 13 0.00029 30.8 4.8 57 311-368 6-62 (287)
405 PF07575 Nucleopor_Nup85: Nup8 67.0 18 0.00038 35.5 6.6 57 380-438 506-562 (566)
406 PF10345 Cohesin_load: Cohesin 66.6 1.4E+02 0.0031 29.6 23.8 48 346-393 372-428 (608)
407 KOG0687 26S proteasome regulat 65.6 98 0.0021 27.4 13.6 94 300-395 104-207 (393)
408 PF13929 mRNA_stabil: mRNA sta 65.6 92 0.002 27.1 19.4 54 332-385 199-254 (292)
409 PF12968 DUF3856: Domain of Un 65.2 53 0.0011 24.2 9.3 83 313-395 22-126 (144)
410 PF00244 14-3-3: 14-3-3 protei 65.1 85 0.0019 26.6 10.6 166 234-400 6-200 (236)
411 PF10366 Vps39_1: Vacuolar sor 64.6 47 0.001 24.0 6.9 27 231-257 41-67 (108)
412 KOG2034 Vacuolar sorting prote 64.6 1.7E+02 0.0037 29.9 24.1 70 72-145 364-433 (911)
413 KOG4642 Chaperone-dependent E3 64.5 87 0.0019 26.4 11.2 118 239-361 20-143 (284)
414 PRK12798 chemotaxis protein; R 63.6 1.2E+02 0.0027 27.9 19.8 24 302-325 259-282 (421)
415 KOG4814 Uncharacterized conser 63.4 1.3E+02 0.0028 29.5 10.9 86 311-397 365-456 (872)
416 COG5187 RPN7 26S proteasome re 62.3 1.1E+02 0.0023 26.7 12.1 68 300-367 115-187 (412)
417 PHA02875 ankyrin repeat protei 62.3 1.3E+02 0.0029 27.9 18.1 209 37-264 6-230 (413)
418 KOG3364 Membrane protein invol 62.1 67 0.0015 24.3 9.2 67 261-329 29-100 (149)
419 PF14689 SPOB_a: Sensor_kinase 61.2 25 0.00055 22.2 4.4 19 307-325 30-48 (62)
420 COG0790 FOG: TPR repeat, SEL1 60.3 1.2E+02 0.0026 26.6 20.7 77 318-400 173-268 (292)
421 KOG3807 Predicted membrane pro 59.3 1.3E+02 0.0028 26.7 13.7 15 353-367 380-394 (556)
422 KOG4279 Serine/threonine prote 59.1 2E+02 0.0044 28.9 15.4 189 183-374 183-405 (1226)
423 cd00280 TRFH Telomeric Repeat 58.7 95 0.0021 25.0 8.1 48 280-327 85-138 (200)
424 COG4259 Uncharacterized protei 58.2 63 0.0014 22.8 6.6 52 318-369 55-106 (121)
425 PF14689 SPOB_a: Sensor_kinase 57.5 25 0.00054 22.3 3.9 30 334-363 22-51 (62)
426 PF11817 Foie-gras_1: Foie gra 57.5 57 0.0012 27.9 7.4 17 274-290 188-204 (247)
427 KOG0376 Serine-threonine phosp 56.8 26 0.00057 32.5 5.3 105 236-347 11-117 (476)
428 KOG0530 Protein farnesyltransf 56.5 1.3E+02 0.0028 25.9 15.6 127 278-408 57-186 (318)
429 COG0735 Fur Fe2+/Zn2+ uptake r 56.4 85 0.0018 24.1 7.4 64 16-81 7-70 (145)
430 PF04097 Nic96: Nup93/Nic96; 55.7 2.2E+02 0.0048 28.3 16.6 59 99-157 113-181 (613)
431 PF14669 Asp_Glu_race_2: Putat 55.7 1.1E+02 0.0024 24.8 14.0 55 269-324 137-205 (233)
432 PRK10564 maltose regulon perip 55.2 28 0.00061 30.3 5.0 36 131-166 260-295 (303)
433 cd08326 CARD_CASP9 Caspase act 54.6 31 0.00067 23.5 4.2 32 81-112 45-76 (84)
434 PF11663 Toxin_YhaV: Toxin wit 54.4 12 0.00027 27.9 2.4 33 311-345 106-138 (140)
435 PF08311 Mad3_BUB1_I: Mad3/BUB 53.8 91 0.002 23.3 10.4 41 353-393 81-123 (126)
436 PF14853 Fis1_TPR_C: Fis1 C-te 53.8 49 0.0011 20.2 4.9 32 133-166 6-37 (53)
437 PRK09857 putative transposase; 53.8 1.3E+02 0.0027 26.6 8.9 63 340-402 211-273 (292)
438 PF09670 Cas_Cas02710: CRISPR- 53.5 1.9E+02 0.004 26.7 12.4 53 239-292 141-197 (379)
439 PF09477 Type_III_YscG: Bacter 53.3 83 0.0018 22.7 9.2 48 107-156 50-97 (116)
440 PF13934 ELYS: Nuclear pore co 52.3 1.4E+02 0.0031 25.1 10.4 111 56-174 69-183 (226)
441 KOG4567 GTPase-activating prot 52.2 1.7E+02 0.0036 25.9 9.7 44 249-292 263-306 (370)
442 PF10255 Paf67: RNA polymerase 51.9 1.2E+02 0.0027 28.0 8.7 82 73-154 82-190 (404)
443 PF11663 Toxin_YhaV: Toxin wit 51.8 20 0.00043 26.9 3.1 35 137-173 104-138 (140)
444 PF11848 DUF3368: Domain of un 51.3 50 0.0011 19.6 5.2 33 240-272 13-45 (48)
445 PF10255 Paf67: RNA polymerase 51.2 44 0.00095 30.8 5.8 60 303-362 125-191 (404)
446 COG4976 Predicted methyltransf 50.5 34 0.00073 28.5 4.5 57 344-400 4-60 (287)
447 cd00280 TRFH Telomeric Repeat 49.9 1.4E+02 0.0029 24.1 7.6 38 271-312 118-155 (200)
448 PF08424 NRDE-2: NRDE-2, neces 48.2 2E+02 0.0044 25.7 14.6 80 316-396 47-129 (321)
449 PF09454 Vps23_core: Vps23 cor 48.1 49 0.0011 21.3 4.1 49 298-347 6-54 (65)
450 PF08311 Mad3_BUB1_I: Mad3/BUB 47.5 1.2E+02 0.0025 22.7 8.4 86 273-361 35-125 (126)
451 PRK10564 maltose regulon perip 46.6 50 0.0011 28.9 5.1 38 231-268 259-296 (303)
452 PTZ00131 glycophorin-binding p 46.4 1.7E+02 0.0038 24.4 19.0 126 131-257 115-266 (413)
453 KOG2297 Predicted translation 45.9 93 0.002 27.3 6.5 45 231-284 296-341 (412)
454 PF04910 Tcf25: Transcriptiona 45.5 2.4E+02 0.0053 25.8 19.4 87 299-385 99-194 (360)
455 PF13762 MNE1: Mitochondrial s 45.1 1.4E+02 0.0031 23.0 9.7 82 267-348 42-128 (145)
456 KOG3824 Huntingtin interacting 45.1 52 0.0011 28.7 5.0 50 275-327 127-177 (472)
457 COG2912 Uncharacterized conser 44.8 1.1E+02 0.0024 26.3 6.9 52 343-394 189-240 (269)
458 KOG1308 Hsp70-interacting prot 44.7 33 0.00072 30.4 3.9 86 278-366 128-213 (377)
459 PRK12798 chemotaxis protein; R 44.2 2.7E+02 0.0058 25.9 20.0 224 167-402 85-328 (421)
460 COG5159 RPN6 26S proteasome re 43.8 2.2E+02 0.0048 24.8 13.0 50 203-252 8-68 (421)
461 PRK07003 DNA polymerase III su 43.3 3.9E+02 0.0084 27.5 12.3 83 245-330 180-275 (830)
462 PRK09462 fur ferric uptake reg 43.3 1.5E+02 0.0033 22.8 7.4 60 154-214 8-68 (148)
463 PRK13800 putative oxidoreducta 43.2 4.3E+02 0.0093 27.9 26.2 256 86-363 624-880 (897)
464 COG5108 RPO41 Mitochondrial DN 42.3 1.5E+02 0.0032 29.3 7.9 70 71-140 33-115 (1117)
465 KOG4567 GTPase-activating prot 42.2 2.5E+02 0.0053 24.9 9.8 88 51-139 263-360 (370)
466 COG0735 Fur Fe2+/Zn2+ uptake r 41.9 1.6E+02 0.0035 22.6 7.0 61 152-213 10-70 (145)
467 COG2912 Uncharacterized conser 41.8 1.5E+02 0.0032 25.6 7.2 63 307-370 188-250 (269)
468 KOG4814 Uncharacterized conser 41.3 2.2E+02 0.0047 28.1 8.7 87 274-363 364-456 (872)
469 KOG1498 26S proteasome regulat 41.2 2.9E+02 0.0062 25.4 16.1 25 130-154 54-78 (439)
470 PF11817 Foie-gras_1: Foie gra 40.9 1.8E+02 0.004 24.8 7.9 54 305-358 183-241 (247)
471 PF15297 CKAP2_C: Cytoskeleton 40.8 2.8E+02 0.006 25.1 9.2 65 279-346 118-186 (353)
472 cd08326 CARD_CASP9 Caspase act 40.7 1.2E+02 0.0025 20.8 5.6 41 107-147 40-80 (84)
473 PRK08691 DNA polymerase III su 40.7 4E+02 0.0088 27.0 12.3 83 245-331 180-276 (709)
474 KOG0686 COP9 signalosome, subu 40.6 3E+02 0.0065 25.5 13.2 63 130-192 152-216 (466)
475 PF12796 Ank_2: Ankyrin repeat 39.8 68 0.0015 21.7 4.4 51 36-91 29-81 (89)
476 PF11838 ERAP1_C: ERAP1-like C 39.5 2.7E+02 0.0059 24.7 13.0 158 245-406 146-312 (324)
477 PF09670 Cas_Cas02710: CRISPR- 39.3 3.1E+02 0.0068 25.3 11.8 57 135-192 138-198 (379)
478 cd08332 CARD_CASP2 Caspase act 39.1 63 0.0014 22.4 3.9 25 114-138 51-75 (90)
479 PF04097 Nic96: Nup93/Nic96; 39.1 4.1E+02 0.0088 26.5 18.5 45 65-110 111-158 (613)
480 PF15469 Sec5: Exocyst complex 38.3 2.1E+02 0.0045 22.9 9.7 25 384-408 154-178 (182)
481 PF04090 RNA_pol_I_TF: RNA pol 38.1 2.3E+02 0.0049 23.3 12.2 36 229-265 41-76 (199)
482 PF02184 HAT: HAT (Half-A-TPR) 37.9 67 0.0014 17.2 2.9 12 316-327 3-14 (32)
483 PF09868 DUF2095: Uncharacteri 37.7 1.5E+02 0.0032 21.5 5.5 40 306-346 67-106 (128)
484 TIGR02270 conserved hypothetic 37.5 3.5E+02 0.0076 25.3 23.9 190 85-290 88-278 (410)
485 KOG0686 COP9 signalosome, subu 36.8 3.5E+02 0.0075 25.1 13.4 161 164-328 151-332 (466)
486 smart00777 Mad3_BUB1_I Mad3/BU 36.7 1.8E+02 0.0039 21.7 8.9 41 353-393 81-123 (125)
487 PRK12356 glutaminase; Reviewed 36.4 3.2E+02 0.0068 24.5 9.2 13 193-205 93-105 (319)
488 PRK11639 zinc uptake transcrip 36.3 2.2E+02 0.0047 22.6 7.8 60 154-214 17-76 (169)
489 PRK09857 putative transposase; 35.9 2.4E+02 0.0053 24.8 8.0 62 268-331 210-271 (292)
490 PF09454 Vps23_core: Vps23 cor 35.8 65 0.0014 20.7 3.3 51 332-382 5-55 (65)
491 COG0790 FOG: TPR repeat, SEL1 35.8 3E+02 0.0065 24.0 19.3 83 244-330 128-221 (292)
492 PF06957 COPI_C: Coatomer (COP 35.4 1.7E+02 0.0037 27.3 7.1 112 239-368 214-333 (422)
493 KOG2659 LisH motif-containing 35.3 2.7E+02 0.0059 23.4 10.5 64 260-326 22-90 (228)
494 PF00244 14-3-3: 14-3-3 protei 35.2 2.8E+02 0.0061 23.5 10.4 59 133-191 6-65 (236)
495 KOG1839 Uncharacterized protei 34.9 5.2E+02 0.011 28.1 10.9 157 237-394 940-1124(1236)
496 PRK11639 zinc uptake transcrip 34.4 1.9E+02 0.0042 22.9 6.6 65 116-180 13-77 (169)
497 PF07720 TPR_3: Tetratricopept 33.8 86 0.0019 17.2 4.9 11 347-357 13-23 (36)
498 COG5108 RPO41 Mitochondrial DN 33.7 3.5E+02 0.0076 26.9 8.8 47 234-280 33-81 (1117)
499 PRK09462 fur ferric uptake reg 33.1 2.3E+02 0.0049 21.8 7.0 62 19-82 6-68 (148)
500 cd07153 Fur_like Ferric uptake 33.0 1.1E+02 0.0024 22.1 4.8 44 235-278 6-49 (116)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-69 Score=526.60 Aligned_cols=438 Identities=29% Similarity=0.539 Sum_probs=411.8
Q ss_pred hhchhhcCCchHHHHHHHHHHhc-CCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDM-GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
|.+|.+.|++++|+++|++|... ++.||..+|+.++.+|++.++.+ .+.+++..|.+.|+.||..+|+.++.+|++.|
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~-~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIR-CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 67788999999999999999876 47899999999999999999999 89999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccC-------------------------------------
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM------------------------------------- 123 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------------- 123 (445)
+++.|.++|++|.+||..+|++++.+|++.|++++|+++|++|
T Consensus 173 ~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 173 MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 9999999999888887777777777766666666666665554
Q ss_pred ---------------------------------CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 124 ---------------------------------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 124 ---------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
..+|+.+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll 332 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI 332 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
.+|++.|++++|.+++..|.+.|++||..++++|+.+|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|++
T Consensus 333 ~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 333 RIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.++++++ +
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~ 489 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---P 489 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---C
Confidence 9999999999999999999999999999999999999999987799999999999999999999999999999988 7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEE
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 410 (445)
+.|+..+|++++.+|...|+++.|..+++++.+.+|++..+|..++.+|.+.|+|++|.++++.|++.|+++.|+++|+.
T Consensus 490 ~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~ 569 (697)
T PLN03081 490 FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIE 569 (697)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeEeEEecCCCCcchhhHHHHHHHHHHhccc
Q 047840 411 VNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443 (445)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (445)
+.+.++.|..++.+||+..+||+.++++....+
T Consensus 570 ~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 602 (697)
T PLN03081 570 VKKQDHSFFSGDRLHPQSREIYQKLDELMKEIS 602 (697)
T ss_pred ECCeEEEEccCCCCCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877654
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-67 Score=525.70 Aligned_cols=437 Identities=36% Similarity=0.645 Sum_probs=407.1
Q ss_pred ChhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+ .+.+++..+.+.|+.||..+|+.|+.+|++.|
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~-~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER-LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH-HHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccC-------------------------------------
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM------------------------------------- 123 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------------------- 123 (445)
++++|.++|++|..||..+|+++|.+|++.|++++|+++|++|
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999998888888888887777777777777766655
Q ss_pred ---------------------------------CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 124 ---------------------------------PERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 124 ---------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
.++|..+|+.++.+|.+.|+.++|+++|++|.. ++.||..||+.++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 345556666666666666667777777777764 4789999999999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|..+|+.+ .+|..+|+++|.+|++.|+.++|++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++| +
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~ 652 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---P 652 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---C
Confidence 9999999999999999999999999999999999999999977799999999999999999999999999999999 6
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEE
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIE 410 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 410 (445)
++||..+|++|+.+|...|+.+.+....+++.+..|+++..|..++..|...|+|++|.++.+.|++.|++++||+||+.
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCeEeEEecCCCCcchhhHHHHHHHHHHhccc
Q 047840 411 VNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443 (445)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (445)
+++.++.|..++.+||+..+||+.++.+.+.++
T Consensus 733 ~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 765 (857)
T PLN03077 733 VKGKVHAFLTDDESHPQIKEINTVLEGFYEKMK 765 (857)
T ss_pred ECCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.7e-60 Score=463.69 Aligned_cols=407 Identities=18% Similarity=0.266 Sum_probs=362.2
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCC--------------------------------CCcccHHHHHHHhhhcCCchhHH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFE--------------------------------PNNYTFPPLIKACVILGPLENFG 50 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~--------------------------------p~~~~~~~ll~~~~~~~~~~~~a 50 (445)
..|++.|++++|+++|++|...|+. ||..+|+.++.+|++.|+++ .|
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e-~A 456 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID-GA 456 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHH-HH
Confidence 4455566666666666666655532 78889999999999999999 99
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCC----CCChhhHHHHHHHHHcCCChHHHHHHhccCC--
Q 047840 51 MFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSP----DRDVVTWTTMVDGYGKMGDFENARELFEKMP-- 124 (445)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 124 (445)
.++++.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.|.
T Consensus 457 ~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~ 536 (1060)
T PLN03218 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999887 4799999999999999999999999999996
Q ss_pred --CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhh
Q 047840 125 --ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE--VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL 200 (445)
Q Consensus 125 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 200 (445)
.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+
T Consensus 537 Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~t 616 (1060)
T PLN03218 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence 38999999999999999999999999999976 67899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 276 (445)
|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.+|++
T Consensus 617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999874 68889999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
.|++++|.++|++|... |+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.+
T Consensus 697 ~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 697 AKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred CCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-CchhHHHHHHHHHH----c-------------------CChHHHHHHHHHHHhcCCccCCcccEEEE
Q 047840 357 VWRKLAEMGIT-DFSTHVLSYNIYKE----A-------------------GWDMEANKVRKLISETGMKKKPGCSVIEV 411 (445)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 411 (445)
++++|.+.+.. +..+|..++..|.+ + +..++|..+|++|.+.|+.|+..+....+
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL 854 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVL 854 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999997764 67778877765432 2 22467999999999999999876654433
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.8e-60 Score=464.16 Aligned_cols=382 Identities=16% Similarity=0.215 Sum_probs=339.6
Q ss_pred CCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCC--------------------------------CChhhHHHHHH
Q 047840 27 EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG--------------------------------EDPFVVSSLLE 74 (445)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~ 74 (445)
.++...|..++..+++.|+++ .|.++|+.|.+.|+. ||..+|+.++.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 345666667777777777777 677777777666532 67888999999
Q ss_pred HHHhcCCHHHHHHHhccCCC----CChhhHHHHHHHHHcCCChHHHHHHhccCC----CCChhhHHHHHHHHHhcCCHhH
Q 047840 75 FYSLVHKMGTARALFDKSPD----RDVVTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSAIMAAYSRISDFKE 146 (445)
Q Consensus 75 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 146 (445)
+|++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999987753 788999999999999999999999999997 4799999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH--cCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR--YHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 147 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.. .|+.||..+|++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999976 578899999999999999999999999999988
Q ss_pred CC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 047840 225 SN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300 (445)
Q Consensus 225 ~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (445)
.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+. |+.|+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCH
Confidence 75 4668999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIY 379 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~ 379 (445)
.+|++|+.+|++.|++++|.++|++|.+.++.||..+|+.++.+|++.|++++|.++|++|.+.+. ++..+|..++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999889999999999999999999999999999999998765 4788999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCccCCcccEEE
Q 047840 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIE 410 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 410 (445)
.+.|++++|.+++..|.+.|+.|+..++..+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999987655443
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-59 Score=466.77 Aligned_cols=398 Identities=28% Similarity=0.505 Sum_probs=338.3
Q ss_pred ChhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
+|.+|++.|++++|+.+|++|...|+.||..||+.++++|+..+++. .+.+++..+.+.|+.||..+++.|+.+|++.|
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA-RGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh-hHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHH----------------------------------------------------
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYG---------------------------------------------------- 108 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~---------------------------------------------------- 108 (445)
+++.|..+|++|..+|..+||++|.+|+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999999887766666666555554
Q ss_pred ------------------cCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 109 ------------------KMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 109 ------------------~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
+.|++++|.++|++|..||..+||.++.+|.+.|++++|+++|++|.+.|+.||..||+.++
T Consensus 317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll 396 (857)
T PLN03077 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396 (857)
T ss_pred hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence 45555566666666677888999999999999999999999999999999999999999999
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
.+|++.|+++.|.++++.+.+.|+.|+..++++|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+.+
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---- 550 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc----
Confidence 9999986 59999999999999999999999999999988876 87777777677777766666666666666655
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHH-hcCCccCCcc
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLIS-ETGMKKKPGC 406 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~ 406 (445)
.||..+|++++.+|++.|+.++|.++|++|.+.+. +|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..+
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 46666666666666666666666666666666543 255566666666666666666666666666 4566665443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-55 Score=426.59 Aligned_cols=397 Identities=21% Similarity=0.351 Sum_probs=367.3
Q ss_pred CCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhc-CCCChhhHHHHHHHHHhcCCHHHHHHHhccCC----CCChhhHH
Q 047840 27 EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFG-FGEDPFVVSSLLEFYSLVHKMGTARALFDKSP----DRDVVTWT 101 (445)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~ 101 (445)
.++..+|+.++..+.+.|++. .|..+|+.|...+ +.||..+|+.++.++.+.++++.+.+++..+. .||..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~-~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHR-EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHH-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 346668999999999999999 9999999998864 78999999999999999999999999998765 48999999
Q ss_pred HHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhH
Q 047840 102 TMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181 (445)
Q Consensus 102 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (445)
.++.+|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
+.+++..+.+.|+.||..++++|+.+|++.|++++|.++|++|.++|..+|++++.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++|+++|+++|++++|.++|++|. .||..+|+.+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~l 397 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNAL 397 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHH
Confidence 99999999999999999999999999999987 999999999999999999999999999999994 5899999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHHh-cCCccCCcccEEEECCeEeEEe
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISE-TGMKKKPGCSVIEVNGVVEEFL 419 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~ 419 (445)
+.+|++.|+.++|.++|++|.+.+. ++..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+..++..++. .|
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~----~l- 472 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE----LL- 472 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH----HH-
Confidence 9999999999999999999999775 4788999999999999999999999999975 689887665443333 22
Q ss_pred cCCCCcchhhHHHHHHHH
Q 047840 420 AGDNRHAQAGEIYRVIHS 437 (445)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~ 437 (445)
...++.+++++.+++
T Consensus 473 ---~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 473 ---GREGLLDEAYAMIRR 487 (697)
T ss_pred ---HhcCCHHHHHHHHHH
Confidence 223345555555544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.5e-27 Score=243.70 Aligned_cols=387 Identities=11% Similarity=0.055 Sum_probs=324.4
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..|...|++++|...|+++.+.. +.+...+..+...+...|+++ .|...++.+.+.+ +.+..++..+...+.+.|+.
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 549 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPD-DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNE 549 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCH
Confidence 46778899999999999988743 234556777888888999999 8999999988765 45677888899999999999
Q ss_pred HHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 83 GTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 83 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
++|...|+++.. .+...+..++..+.+.|++++|..+++.+.. .+...|..+...+...|++++|...|+++.+
T Consensus 550 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988744 3556777888999999999999999998864 3677888999999999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHH
Q 047840 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWN 233 (445)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 233 (445)
.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++.+.. .+...+.
T Consensus 630 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 630 LQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred hC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 53 3466778888889999999999999999988765 55678888899999999999999999988765 3566778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA 313 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (445)
.+...+...|++++|+..|+++...+ |+..++..+..++.+.|++++|...++.+... .+.+...+..+...|...
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 88888999999999999999988864 45577777888889999999999999988863 355677888888889999
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 314 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
|++++|...|+++.+.. ++++.+++.+...+...|+ ++|+..++++.+..|+++..+..++.++...|++++|.+.++
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988776 6788888999999998888 889999999999888888888889999999999999999999
Q ss_pred HHHhcCC
Q 047840 394 LISETGM 400 (445)
Q Consensus 394 ~m~~~~~ 400 (445)
++.+.+.
T Consensus 862 ~a~~~~~ 868 (899)
T TIGR02917 862 KAVNIAP 868 (899)
T ss_pred HHHhhCC
Confidence 9887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.5e-27 Score=243.61 Aligned_cols=386 Identities=12% Similarity=0.046 Sum_probs=337.8
Q ss_pred hhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
+..+.+.|++++|+.+++.+... .+++..++..+...+...|+++ .|...++.+.+.. +.+...+..+...+...|+
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLA-KAREAFEKALSIE-PDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHH-HHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCC
Confidence 45678899999999999999874 3557778899999999999999 9999999988754 3456677888999999999
Q ss_pred HHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 82 MGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 82 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
+++|...|+++.. .+..++..+...+.+.|+.++|..+|+++.. .+...+..++..+...|++++|.++++.+.
T Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999998754 3667888999999999999999999998854 356678889999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhH
Q 047840 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAW 232 (445)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 232 (445)
... +.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++.+.|++++|...|+++.. .+..++
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 672 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ 672 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 753 5578899999999999999999999999998875 55677888899999999999999999987754 356789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
..++..+...|++++|..+++.+...+ +++...+..+...+...|++++|...++.+... .|+..++..++.++.+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHH
Confidence 999999999999999999999998875 456778888888999999999999999999864 5666788889999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.|++++|.+.++.+.+.. +.+...+..+...|...|+.++|.+.|+++.+..|+++.++..++..+...|+ .+|...+
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~ 826 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA 826 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence 999999999999998876 77889999999999999999999999999999999999999999999999999 8899999
Q ss_pred HHHHhc
Q 047840 393 KLISET 398 (445)
Q Consensus 393 ~~m~~~ 398 (445)
+++.+.
T Consensus 827 ~~~~~~ 832 (899)
T TIGR02917 827 EKALKL 832 (899)
T ss_pred HHHHhh
Confidence 988764
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=7.7e-23 Score=180.74 Aligned_cols=370 Identities=12% Similarity=0.109 Sum_probs=313.5
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCC-CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhh-HHHHHHHHHhcCC
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV-VSSLLEFYSLVHK 81 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 81 (445)
.+-..|++++|+..++.+.+.. | ....|..+..++...|+.+ .|.+.|....+ +.|+... .+.+....-..|.
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~-~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLE-LAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCc-ccHHHHHHHHh--cCcchhhhhcchhHHHHhhcc
Confidence 4557899999999999999844 5 5678999999999999999 89999888877 4565543 3345555666899
Q ss_pred HHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 82 MGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 82 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
+.+|...|.+..+ | -...|+.|...+...|+...|++.|++... | -...|-.|...|...+.+++|+..|.+..
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999887665 3 346799999999999999999999999876 4 35678999999999999999999999887
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhh
Q 047840 156 EVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGA 231 (445)
Q Consensus 156 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 231 (445)
.. .| ....+..+...|...|.++.|+..|++.++.. |.-+..|+.|..++-..|++.+|.+.|.+... ....+
T Consensus 280 ~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hada 356 (966)
T KOG4626|consen 280 NL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADA 356 (966)
T ss_pred hc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHH
Confidence 64 45 46778888888999999999999999999874 34467899999999999999999999997764 35678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDL 309 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 309 (445)
.+.|...|...|..++|..+|....+- .|. ....+.|...|-++|++++|...|++.. .++|+ ...|+.+...
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNT 431 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchH
Confidence 899999999999999999999998774 444 4578888999999999999999999998 56887 6788999999
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
|...|+.+.|.+.+.+.+..+ +.-....+.|...|...|++.+|++.++..+++.|+.+.++-.++.++.--.+|.+
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999999999988655 44567899999999999999999999999999999988899888887766666555
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5.3e-21 Score=185.00 Aligned_cols=387 Identities=11% Similarity=0.013 Sum_probs=287.6
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (445)
.|.+.|++++|+..|++.+. ..|+...|..+..++...|+++ .|...++...+.. +.+...+..+..+|...|+++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~-~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWE-KVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHH-HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 46778999999999999887 4588888888999999999999 9999999988854 335668888999999999999
Q ss_pred HHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCC-----------------------------CCh---
Q 047840 84 TARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPE-----------------------------RNA--- 128 (445)
Q Consensus 84 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------------~~~--- 128 (445)
+|...|...... +......++.-+........+...++.-.. .+.
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 998877543221 111111111111110011112222111110 000
Q ss_pred hhHHHHHHH---HHhcCCHhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhH
Q 047840 129 VSWSAIMAA---YSRISDFKEVLSLFRQMQEVG-MKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA 203 (445)
Q Consensus 129 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 203 (445)
..+..+... ....+++++|++.|+...+.+ ..| ....+..+...+...|++++|...+++..... +.+...|..
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~ 370 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIK 370 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHH
Confidence 011111111 123468999999999998754 234 45677888888899999999999999999874 445668888
Q ss_pred HHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMV 280 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 280 (445)
+..++...|++++|...|++... .+...|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 89999999999999999987654 367789999999999999999999999998863 23566777888889999999
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH-----H-HHHHHHHHHHHcCChHHH
Q 047840 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA-----N-VWGALLSACRIYGKIEVG 354 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~-~~~~l~~~~~~~g~~~~a 354 (445)
++|...++..... .+.+...++.+..++...|++++|.+.|++.+......+. . .++..+..+...|++++|
T Consensus 450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999863 3445788889999999999999999999998765411111 1 122222333446999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++++++++.+|++..++..++.++.+.|++++|.+.+++..+.
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999988754
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.7e-22 Score=183.62 Aligned_cols=270 Identities=10% Similarity=0.048 Sum_probs=177.9
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN---ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (445)
++..+...+...|++++|..+++.+...+..++ ...+..+...+.+.|++++|..+|+++.+.. +.+..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444444444444444444443211111 1233444444444555555555555444432 233444444555
Q ss_pred HHHccCChHHHHHHhhcCCCCC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC
Q 047840 207 MYSKCGHVHSALSVFEGISNKD--------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 278 (445)
.+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCC
Confidence 5555555555555554443211 1134456677788899999999999888753 234567777888889999
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047840 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
++++|.++++++... +......++..++.+|...|++++|...++++.+.. |+...+..++..+.+.|++++|..++
T Consensus 229 ~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l 305 (389)
T PRK11788 229 DYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALL 305 (389)
T ss_pred CHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999998864 212224567888899999999999999999988654 66666788999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHH---cCChHHHHHHHHHHHhcCCccCCc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKE---AGWDMEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~ 405 (445)
+++++..|++. .+..++..+.. .|+..++..++++|.+.+++++|.
T Consensus 306 ~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 306 REQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 99999988765 45555555443 568999999999999999888887
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.7e-20 Score=193.03 Aligned_cols=387 Identities=9% Similarity=0.013 Sum_probs=280.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCC-hhhHH------------
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVVS------------ 70 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~------------ 70 (445)
.+...|++++|+..|++..+.. +.+...+..+...+.+.|+++ .|...++...+...... ...|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~-eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRA-RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3556788899999998888743 225667777888888888888 88888888877543221 11111
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHH----------
Q 047840 71 SLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAI---------- 134 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l---------- 134 (445)
.....+.+.|++++|...|+++.. .+...+..+..++...|++++|++.|++..+ | +...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 223456678888888888887654 2555677788888888888888888887764 2 22233222
Q ss_pred --------------------------------HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 135 --------------------------------MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 135 --------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 334455677888888887777643 22455666777778888888888
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC----h---------hhHHHHHHHHHhcCChHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD----A---------GAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~ 249 (445)
...++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+......+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 88888877653 3344455555555667788888888887765421 0 11223456677888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
.+++. .+++...+..+...+.+.|++++|...|+.+.+. -+.+...+..++..|...|++++|++.++.+.+.
T Consensus 594 ~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 594 ALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88772 2445566777888899999999999999999964 2445788889999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHcCChHHHHHHHHHHHh-cCCcc
Q 047840 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF------STHVLSYNIYKEAGWDMEANKVRKLISE-TGMKK 402 (445)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 402 (445)
. +.+..++..+..++...|++++|.+++++++...|+++ ..+..++..+...|++++|...+++... .|+.|
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 4 45667788888999999999999999999998776543 3566678999999999999999888853 34543
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=9.4e-20 Score=175.80 Aligned_cols=356 Identities=9% Similarity=-0.002 Sum_probs=271.8
Q ss_pred hhhcCCchHHHHHHHHHHhc--CCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 5 YMQANFPKLSVFCYLDMLDM--GFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+.++.+|+.---.|....++ .-.-+..-...++..+.+.|++. .|..+++........ +...+..++.+....|++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETD-VGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcc-hhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 45566666655555543322 11123445666778888999999 899999888886533 345556666777789999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
+.|...|+++.. | +...+..+...+.+.|++++|...+++... | +...+..+...+...|++++|...++.+..
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998764 3 566788888999999999999999998875 4 566788889999999999999999998876
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHH
Q 047840 157 VGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWN 233 (445)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~ 233 (445)
.... +...+..+ ..+...|++++|...++.+.+....++......+..++.+.|++++|...|++... .+...+.
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5322 33333333 34788899999999999988765334445555567788899999999999987654 3566788
Q ss_pred HHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 047840 234 AMISGVAMNGDAKK----SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309 (445)
Q Consensus 234 ~l~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (445)
.+...+...|++++ |+..|++..... +.+...+..+...+...|++++|...++++... -+.+...+..+..+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~ 327 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 88899999999885 799999988763 235678888888899999999999999999864 23345667778889
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.+.|++++|...++.+...+ +.+...+..+..++...|+.++|...|+++.+..|++
T Consensus 328 l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 999999999999999988664 3333445556778889999999999999999988874
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=4.1e-21 Score=169.94 Aligned_cols=357 Identities=11% Similarity=0.135 Sum_probs=278.8
Q ss_pred ccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCCh--h-hHHHHHHHH
Q 047840 31 YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDV--V-TWTTMVDGY 107 (445)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~-~~~~l~~~~ 107 (445)
.+|..+...+-..|+++ .|...++.+++.. +..+..|..+..++...|+.+.|...|.+..+-++ . ..+.+...+
T Consensus 117 e~ysn~aN~~kerg~~~-~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQ-DALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHH-HHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 45555666666666666 6666666666632 22345566666666666666666666665554322 2 122334444
Q ss_pred HcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHH
Q 047840 108 GKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACAHLGAITQGL 183 (445)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~ 183 (445)
...|+..+|...+.+..+ | -...|..|...+-..|+...|+..|++... +.|+ ...|..|...|...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHH
Confidence 456666666666665543 3 245688888888889999999999998877 4555 568888999999999999999
Q ss_pred HHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047840 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT 260 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 260 (445)
..|.++.... +....++..+...|-..|.+|-|+..|++..+. =+.+|+.|..++-..|++.+|.+.|.+......
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 9998888764 455678888888899999999999999987653 346899999999999999999999999888532
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC-HHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD-ANVW 338 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~ 338 (445)
-.....+.|...+...|.+++|..+|..... +.|. ....+.|...|-..|++++|+..|++.++ +.|+ ...+
T Consensus 352 -~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~ 425 (966)
T KOG4626|consen 352 -NHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADAL 425 (966)
T ss_pred -ccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHH
Confidence 2456788899999999999999999999884 3555 56678899999999999999999999884 4555 5789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.+...|-..|+.+.|.+.+.+++...|.-..++..|+.+|...|+..+|+.-++...+.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999999999999999999998889999999999999999999999987654
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1e-20 Score=174.09 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=226.7
Q ss_pred HHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCCC-C------hhhHHHHHHHHHhcC
Q 047840 73 LEFYSLVHKMGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPER-N------AVSWSAIMAAYSRIS 142 (445)
Q Consensus 73 ~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~l~~~~~~~~ 142 (445)
...+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+... + ...+..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3345567888888888887764 2 4456777778888888888888888777642 1 245777888888999
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc----hhhhhHHHHHHHccCChHHHH
Q 047840 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN----VILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 218 (445)
++++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999887753 44677888888899999999999999998887653322 124556777888899999999
Q ss_pred HHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 219 SVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 219 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
..|+++.+ .+...+..+...+.+.|++++|.++++++...+......++..+..+|...|++++|...++.+.+.
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 278 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-- 278 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 99988754 2455778888999999999999999999987643333567888899999999999999999999864
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhC
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI---YGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 365 (445)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..+++++.+..
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 577777788999999999999999999998765 5888888888877664 558899999999998743
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=1.2e-19 Score=186.70 Aligned_cols=352 Identities=12% Similarity=0.092 Sum_probs=248.7
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CCh---hhHH----------
Q 047840 37 IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--RDV---VTWT---------- 101 (445)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~---------- 101 (445)
...+...|+++ .|...++...+.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~-~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 276 GLAAVDSGQGG-KAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45567889999 9999999998864 34678889999999999999999999998764 321 1121
Q ss_pred --HHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 047840 102 --TMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC--- 173 (445)
Q Consensus 102 --~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--- 173 (445)
.....+.+.|++++|...|++... | +...+..+...+...|++++|++.|++..+.. +.+...+..+...+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 224567789999999999999875 3 56678888999999999999999999998753 22344444443333
Q ss_pred ---------------------------------------HccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 174 ---------------------------------------AHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 174 ---------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
...|++++|...++++.+.. |.+..++..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33455555555555555543 23344455555555555666
Q ss_pred HHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHhhcCCcHHH
Q 047840 215 HSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET---------TFVAVLTTCTHAKMVRD 282 (445)
Q Consensus 215 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~l~~~~~~~~~~~~ 282 (445)
++|...++++.. .+...+..+...+...++.++|+..++++......++.. .+......+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 666555554422 133333333344445555555555555443221111111 11223445666677777
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
|..+++. .+++...+..+...+.+.|++++|+..|+++++.. +.+...+..++..+...|++++|++.++.+.
T Consensus 592 A~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7776651 14455667788889999999999999999998876 6678899999999999999999999999999
Q ss_pred HhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 363 EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+..|+++..+..++.++.+.|++++|.++++++....
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999888889999999999999999999999987654
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.9e-19 Score=173.70 Aligned_cols=323 Identities=9% Similarity=-0.012 Sum_probs=267.0
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCC
Q 047840 70 SSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISD 143 (445)
Q Consensus 70 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 143 (445)
..++..+.+.|+++.|..+++.... .+...+..++.+....|++++|...|+++.. | +...+..+...+...|+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3456677889999999999987754 3556677777888889999999999999975 4 56678888999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhc
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
+++|...|++..... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999998853 3356788889999999999999999999887765 2333344333 347889999999999988
Q ss_pred CCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHH----HHHHHHHhHHhhC
Q 047840 224 ISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD----GLNLFENMSAVYG 295 (445)
Q Consensus 224 ~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~ 295 (445)
+.+. +...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...++++...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 7553 23344555678889999999999999998864 3356777788888999999986 89999999864
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
.+.+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|+..++++.+..|.++..+..+
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~ 358 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYA 358 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 23457788899999999999999999999998776 56677888899999999999999999999999999887667777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcC
Q 047840 376 YNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+.++...|++++|...+++..+..
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC
Confidence 889999999999999999987653
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=6.1e-19 Score=173.81 Aligned_cols=388 Identities=7% Similarity=-0.024 Sum_probs=296.7
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
......|+.++|+.++.+..... +.+...+..+...+...|+++ .|..+++...+.. +.+...+..+..++...|++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~-~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQ-NSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 44567899999999999987622 334446888889999999999 9999999988853 44566777888999999999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
++|...+++..+ | +.. +..+..++...|+.++|+..++++.+ | +...+..+...+...++.+.|++.++....
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 999999998754 3 455 88888999999999999999999875 4 555667788888899999999999886653
Q ss_pred cCCCCCH------HHHHHHHHHHH-----ccCCh---hHHHHHHHHHHHc-CCCCchh-hhh----HHHHHHHccCChHH
Q 047840 157 VGMKPNE------SGLVSVLTACA-----HLGAI---TQGLWVHSYAKRY-HLEKNVI-LAT----AVVDMYSKCGHVHS 216 (445)
Q Consensus 157 ~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~ 216 (445)
.|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+. ..+..+...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 2321 11222222222 12234 6788888888864 2222221 111 11334567799999
Q ss_pred HHHHhhcCCCCC---hh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 217 ALSVFEGISNKD---AG-AWNAMISGVAMNGDAKKSLELFDRMVKSGTQP---TETTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 217 a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
|+..|+++.+.+ +. ....+...|...|++++|+..|+++....... .......+..++...|++++|..+++.
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999987642 21 22335778999999999999999987653211 134456667788999999999999999
Q ss_pred hHHhhC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 290 MSAVYG----------VEPQ---LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 290 ~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
+..... -.|+ ...+..+...+...|++++|++.++++.... +.+...+..+...+...|++++|++
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 986410 0122 2244567778889999999999999998776 6778899999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++++++..|++...+..++..+...|++++|+.+++.+.+.
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999764
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=3e-17 Score=159.11 Aligned_cols=388 Identities=10% Similarity=-0.025 Sum_probs=287.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNY-TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
...++|+++.|++.|++..+.. |+.. ....++..+...|+.+ .|...++.... .-+........+...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~-~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQ-EVIDVYERYQS-SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcH-HHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCH
Confidence 3568999999999999998854 6652 2237788888889999 99999988872 1122223333446688889999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
++|.++|+++.+ | ++..+..++..+...++.++|++.++++.. |+...+..++..+...++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999876 3 566777888899999999999999999986 44444444444444466776799999999986
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHH------------------------------------------------HHHHH
Q 047840 158 GMKPNESGLVSVLTACAHLGAITQGLW------------------------------------------------VHSYA 189 (445)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~------------------------------------------------~~~~~ 189 (445)
. +-+...+..+..++.+.|-...|.+ -++.+
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 4 2255555666666655553332222 22222
Q ss_pred HHc-C-CCCchhh----hhHHHHHHHccCChHHHHHHhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 190 KRY-H-LEKNVIL----ATAVVDMYSKCGHVHSALSVFEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 190 ~~~-~-~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
... + .|+.... ..-.+-++...|+..++++.|+.+... ...+-..+.++|...+++++|+.+|+++....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 1 1221111 123445677889999999999999853 23356678899999999999999999986643
Q ss_pred -----CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC----------CCC---hhHHHHHHHHHHhcCChHHHHH
Q 047840 260 -----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV----------EPQ---LEHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 260 -----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~~~~~~g~~~~A~~ 321 (445)
..++......|.-++...+++++|..+++.+.+.... .|| ...+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223334577888999999999999999999863110 122 1233456777889999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.++++.... |-|......+...+...|.+.+|++.++.+....|.+..+....+.++...|+|.+|..+.+.+..
T Consensus 438 ~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 438 KLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999998877 789999999999999999999999999999999999999999999999999999999998876644
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=4.9e-17 Score=160.80 Aligned_cols=229 Identities=11% Similarity=0.020 Sum_probs=184.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGV 239 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 239 (445)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++.. ++...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 56677777777766 78888999887777663 4544444455556789999999999987654 3444566777788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999988764 223333334444455679999999999999854 67788888899999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...+++..... +.+...++.+..++...|+.++|+..++++++..|.++.++..++.++...|++++|...+++..+.
T Consensus 629 ~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 629 VSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999998877 6678888899999999999999999999999999999999999999999999999999999888754
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.6e-17 Score=160.91 Aligned_cols=353 Identities=9% Similarity=-0.046 Sum_probs=240.7
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHHcCC
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R-DVVTWTTMVDGYGKMG 111 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g 111 (445)
.....+.+.|+++ .|...|+..++ ..|+...|..+..+|.+.|++++|+..++...+ | +...|..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~-~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFN-KAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHH-HHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 4455566667777 77777776665 345566666677777777777777777766543 2 4456666777777777
Q ss_pred ChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHHH---------------------
Q 047840 112 DFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM--KPNESG--------------------- 165 (445)
Q Consensus 112 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~--------------------- 165 (445)
++++|+..|...... +......++..+.. ..+............ .|....
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 777776666543211 11111111111111 111111111111100 000000
Q ss_pred ---------HHHHHHH---HHccCChhHHHHHHHHHHHcC--CCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC---C
Q 047840 166 ---------LVSVLTA---CAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK---D 228 (445)
Q Consensus 166 ---------~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 228 (445)
+..+... ....+++++|...|+.+.+.+ .+.....++.+..++...|++++|...|++.... +
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~ 364 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV 364 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 0000000 012357889999999998765 2334567888888999999999999999987653 3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++.... .+.+...+..+..
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 5578888899999999999999999998863 335778888889999999999999999999863 2345677778889
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH-------HHHHHHH
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL-------SYNIYKE 381 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~~~~ 381 (445)
++.+.|++++|+..|++.++.. +.++..++.+...+...|++++|+..|+++++..|.+...+.. ....+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999988765 5678899999999999999999999999999988864332221 1223444
Q ss_pred cCChHHHHHHHHHHHhc
Q 047840 382 AGWDMEANKVRKLISET 398 (445)
Q Consensus 382 ~g~~~~A~~~~~~m~~~ 398 (445)
.|++++|.+++++..+.
T Consensus 521 ~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 521 KQDFIEAENLCEKALII 537 (615)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 79999999999987764
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=3.8e-17 Score=161.16 Aligned_cols=362 Identities=9% Similarity=-0.030 Sum_probs=274.9
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..+...|++++|..+|++..+.. +.+...+..+...+...|+++ .|...++.+.+.. +.+.. +..+..++...|+.
T Consensus 57 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~-eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD-EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCH
Confidence 35778999999999999998743 334566777778889999999 9999999998863 44555 88889999999999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC-CCh------hhHHHHHHHHH-----hcCCH---
Q 047840 83 GTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE-RNA------VSWSAIMAAYS-----RISDF--- 144 (445)
Q Consensus 83 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~-----~~~~~--- 144 (445)
++|...++++.+ | +...+..+..++...|..++|+..++.... |+. .....++.... ..+++
T Consensus 133 ~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 133 WDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 999999998765 3 555667788888899999999999998876 211 11222233222 22334
Q ss_pred hHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHHHccCChhHHHHHHHHHHHcCCC-CchhhhhHHHHHHHccCChHHH
Q 047840 145 KEVLSLFRQMQEV-GMKPNES-GLV----SVLTACAHLGAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSA 217 (445)
Q Consensus 145 ~~a~~~~~~~~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 217 (445)
++|++.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHH
Confidence 7889899988753 2233221 111 1134456779999999999999987632 22 2223357789999999999
Q ss_pred HHHhhcCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHHhhc
Q 047840 218 LSVFEGISNKD-------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-----------QPTE---TTFVAVLTTCTH 276 (445)
Q Consensus 218 ~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~ 276 (445)
...|+++...+ ......+..++...|++++|..+++++..... .|+. ..+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999875432 23455666788999999999999999987531 1332 244566777889
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
.|++++|+..++++... .+.+...+..++..+...|++++|++.+++..... |.+...+...+..+...|++++|+.
T Consensus 372 ~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999864 35567788899999999999999999999998766 5567788888888999999999999
Q ss_pred HHHHHHHhCCCCchhH
Q 047840 357 VWRKLAEMGITDFSTH 372 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~ 372 (445)
+++++++..|+++.+.
T Consensus 449 ~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 449 LTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999987444
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=2.8e-16 Score=155.48 Aligned_cols=376 Identities=9% Similarity=-0.017 Sum_probs=237.6
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHH-HHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh-cCCHHHHHHHh
Q 047840 12 KLSVFCYLDMLDMGFEPNNYTFPPL-IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL-VHKMGTARALF 89 (445)
Q Consensus 12 ~~A~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~ 89 (445)
++|.+.++ .......|+..+.... ...|...++++ .+...+..+.+.+. .+......|..+|.. .++ +.+..++
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~-~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~ 239 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWS-QADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQ 239 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHH-HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHh
Confidence 44455554 3332222334444444 67778888888 78888888888653 344446666667776 366 7777777
Q ss_pred ccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC-----C--------------------------------------
Q 047840 90 DKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE-----R-------------------------------------- 126 (445)
Q Consensus 90 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-------------------------------------- 126 (445)
+...+.++..+..+...|.+.|+.++|.++++++.. |
T Consensus 240 ~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (987)
T PRK09782 240 SQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGAT 319 (987)
T ss_pred chhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHH
Confidence 765556788888999999999999999999888721 0
Q ss_pred -------------------------------------------------------ChhhHHHHHHHHHhcCCHhHHHHHH
Q 047840 127 -------------------------------------------------------NAVSWSAIMAAYSRISDFKEVLSLF 151 (445)
Q Consensus 127 -------------------------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (445)
+......+.-...+.|+.++|.++|
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~ 399 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLL 399 (987)
T ss_pred HHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0000001111123344555555555
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHHHccCC---hhHH----------------------HHHHHHHHHc-CC-CC--chhh
Q 047840 152 RQMQEV--GMKPNESGLVSVLTACAHLGA---ITQG----------------------LWVHSYAKRY-HL-EK--NVIL 200 (445)
Q Consensus 152 ~~~~~~--~~~p~~~~~~~l~~~~~~~~~---~~~a----------------------~~~~~~~~~~-~~-~~--~~~~ 200 (445)
+..... +-.++.....-++..+.+.+. ..++ ...+...... +. ++ +...
T Consensus 400 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a 479 (987)
T PRK09782 400 LQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAA 479 (987)
T ss_pred HHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHH
Confidence 554331 112222233344555544443 1111 1111112111 11 33 5667
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAM--ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 278 (445)
+..+..++.. ++.++|...+.+.....+..+..+ ...+...|++++|...|+++... .|+...+..+...+.+.|
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 7777777776 788888886665543222233333 34445788888888888887554 344455556667778888
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047840 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
+.++|...++...+. . +++...+..+.....+.|++++|...+++.++.. |+...+..+..++.+.|++++|+..+
T Consensus 557 d~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 557 NGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888754 2 2223333333344445688888888888887554 56778888888888888888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+++++..|+++..+..++.++...|++++|.+.+++..+.
T Consensus 633 ~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 633 RAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888877654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=2.2e-15 Score=146.31 Aligned_cols=353 Identities=11% Similarity=0.060 Sum_probs=275.7
Q ss_pred HhhhcCCchhHHHHHHHHHHHhcCCCCh--hhHHHHHHHHHhcCCHHHHHHHhccCCCCChhh-HHHH--HHHHHcCCCh
Q 047840 39 ACVILGPLENFGMFVHAHVVKFGFGEDP--FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVT-WTTM--VDGYGKMGDF 113 (445)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l--~~~~~~~g~~ 113 (445)
...+.|++. .|...++++.+.. |+. .++ .++..+...|+.++|...+++...|+... +..+ ...+...|++
T Consensus 43 i~~r~Gd~~-~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTA-PVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHH-HHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 357899999 9999999998854 443 344 88888889999999999999998764443 3334 4578888999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 047840 114 ENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190 (445)
Q Consensus 114 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (445)
++|+++|+++.+ | ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999985 3 5667778888999999999999999999774 5666666555555555667767999999999
Q ss_pred HcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--------------------------------------------
Q 047840 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-------------------------------------------- 226 (445)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------------------- 226 (445)
+.. |.+...+..+..++.+.|-...|.++..+-+.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 986 55677777888888888877777666654331
Q ss_pred -------CChh-------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 227 -------KDAG-------AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 227 -------~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
+++. +..-.+-++...+++.++++.|+.+...|.+....+-..+..+|...+++++|..++..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 0010 01123446677899999999999999888665666888999999999999999999999976
Q ss_pred hhC----CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-----------CCCH---HHHHHHHHHHHHcCChHHH
Q 047840 293 VYG----VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-----------GGDA---NVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 293 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a 354 (445)
..+ ..++......|.-+|...+++++|..+++.+.+... .||+ .....++..+.-.|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 421 122344457788999999999999999999987321 1222 2344566778899999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.++++....|.|+.....++.++...|++.+|++.++.....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999776544
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=6.5e-16 Score=132.61 Aligned_cols=212 Identities=11% Similarity=0.112 Sum_probs=125.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS---NKDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.|++++|...|++.+...-......|| +.-.+-..|++++|+.+|-++. ..+....-.+.+.|-...++..|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 345556666665555443222233333 2233455566666666665443 235555555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (445)
.+.... ++.|+..+..|...|-+.|+-.+|++++-.--+ -++.+..+...|...|....-+++|+.+|++.. -++
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcC
Confidence 555443 344556666666667777777777666554443 345566666666666666666777777776653 346
Q ss_pred CCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 333 GDANVWGALLSAC-RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 333 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
|+..-|..++..| .+.|++++|.++++...+..|.+..+...|++.+...|.. ++.++-++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 7777777666554 4567777777777777777777777777777776666642 34443333
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=8e-18 Score=146.78 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (445)
.+...+.+.|++++|++++.+......+|+ ..-|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 446777888999999999866544432344 4444455566677889999999999998776 3366677777777 788
Q ss_pred CChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 212 GHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 212 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
+++++|..++.+.-+ +++..+...+..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998876643 466677888888999999999999999987543 34567778888888999999999999999
Q ss_pred HhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 289 NMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 289 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+..+. .| |......++..+...|+.+++.+++....+.. +.|+..|..+..++...|+.++|+..|++..+..|+
T Consensus 171 ~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 171 KALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99975 55 47778889999999999999999988877655 667778999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
|+.+...++.++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887764
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=3.9e-15 Score=139.13 Aligned_cols=387 Identities=13% Similarity=0.100 Sum_probs=243.5
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCccc--HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYT--FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
++|-..|++++|...|-+..+.. |+... +--+...+...|+++ .+...|+.+.+.. +.+..+...|...|+..+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle-~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLE-ESKFCFEKVLKQL-PNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHH-HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhh
Confidence 34556666666666666655432 44332 333455566666666 6666666666542 334445555555555553
Q ss_pred ----CHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCC--------CCChhhHHHHHHHHHhcCCHh
Q 047840 81 ----KMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMP--------ERNAVSWSAIMAAYSRISDFK 145 (445)
Q Consensus 81 ----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~ 145 (445)
..+.|..++.+..++ |...|-.+...+.....+.. +..|.... ...+...|.+...+...|+++
T Consensus 391 ~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 391 KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 445555555555443 44455555555443333222 33333221 245566677777777777777
Q ss_pred HHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHH
Q 047840 146 EVLSLFRQMQEV---GMKPNE------SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216 (445)
Q Consensus 146 ~a~~~~~~~~~~---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 216 (445)
.|...|...... ...+|. .+--.+....-..++++.|...|..+.+.. |.=+..|..++.+....+...+
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHH
Confidence 777777666543 112222 122234444555667777777777776652 2222333333333334456677
Q ss_pred HHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhc------------CCcH
Q 047840 217 ALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTH------------AKMV 280 (445)
Q Consensus 217 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~------------~~~~ 280 (445)
|...++.... .++..++.+...+.....+..|.+-|....+.- ..+|..+...|...|.. .+..
T Consensus 549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 7777766554 366677777778888888888877666654432 23566666666664432 2346
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047840 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 360 (445)
++|+++|.++.+ .-+-|...-+-+.-.++..|++.+|..+|....+.. ..+..+|..+..+|...|++..|++.|+.
T Consensus 629 ~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 629 EKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 778888888875 335567777788888899999999999999987765 45667899999999999999999999999
Q ss_pred HHHhC-C-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 361 LAEMG-I-TDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 361 ~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..+.. + +++.+...|++++.+.|++.+|.+.+......
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 88733 3 37778889999999999999999977766543
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=6.6e-15 Score=126.52 Aligned_cols=386 Identities=12% Similarity=0.037 Sum_probs=271.1
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCccc----HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYT----FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (445)
.+.+...+.+|+.+|+-.+..-...+..+ .+.+--.+.+.|.++ .|...|+..... .|+..+--.|+-++...
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~-dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYD-DAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccch-hhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 46788889999999987776542223333 333444578889999 888888888774 56766655555566667
Q ss_pred CCHHHHHHHhccCCC----------------CChhhHHH-----HHHHHHcCC--ChHHHHHHhccCC----CCChh---
Q 047840 80 HKMGTARALFDKSPD----------------RDVVTWTT-----MVDGYGKMG--DFENARELFEKMP----ERNAV--- 129 (445)
Q Consensus 80 g~~~~a~~~~~~~~~----------------~~~~~~~~-----l~~~~~~~g--~~~~A~~~~~~~~----~~~~~--- 129 (445)
|+-++..+.|.++.. |+....+. .+.-.-+.+ +.++++-.--++. .|+-.
T Consensus 323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~ 402 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC 402 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence 888888888876643 12222221 122222211 1222222222222 22110
Q ss_pred ----------hHH--------HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHH
Q 047840 130 ----------SWS--------AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV--SVLTACAHLGAITQGLWVHSYA 189 (445)
Q Consensus 130 ----------~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~ 189 (445)
.+. .-...+.+.|+++.|++++.-+.+.+-+.-...-+ ..+..+....++..|.++-+..
T Consensus 403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a 482 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA 482 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence 011 11335789999999999998887654332222222 2333334455788898888888
Q ss_pred HHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMI---SGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
+... .-+......-.+.....|++++|...|++....|...-.+|. -.+-..|+.++|++.|-++..- ...+...
T Consensus 483 ln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~ev 560 (840)
T KOG2003|consen 483 LNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEV 560 (840)
T ss_pred hccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHH
Confidence 7654 344555444555667789999999999999988876555444 3567789999999999887553 3346778
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...|....+..+|++++.+... -++.|+...+.|.+.|-+.|+-..|.+.+-+-.. -++.+..+...|..-|.
T Consensus 561 l~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHH
Confidence 88888999999999999999988874 4566788899999999999999999987655433 34778899999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
...-+++++.+|+++.-..|....+...++.++.+.|++..|.++++...+
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 998999999999999999998776677778889999999999999998864
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.7e-14 Score=123.16 Aligned_cols=307 Identities=14% Similarity=0.141 Sum_probs=144.7
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhh--cCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 047840 6 MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVI--LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (445)
..+|..+.+.-+|+.|.+.|++.+...-..+++..+- ..+..-.-++.|-.|.+.|-. +..+| +.|++.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccHH
Confidence 4567777888888888887776666655555443222 222221223334334333311 11222 223322
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC----CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047840 84 TARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE----RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159 (445)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 159 (445)
+ ++-+....+..++..||.++++--..+.|.+++++-.. -+..+||.+|.+-.-.. -.+++.+|....+
T Consensus 197 d---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 197 D---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred H---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 2 23333333455566666666666666666666655543 24445555554322111 1455555655556
Q ss_pred CCCHHHHHHHHHHHHccCChhHH----HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHH-HHHHhhcCCC--------
Q 047840 160 KPNESGLVSVLTACAHLGAITQG----LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS-ALSVFEGISN-------- 226 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~-------- 226 (445)
.||..|+|+++.+.++.|+++.| .+++.+|++.|+.|...+|..++..+++.++..+ |..++.++..
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 66666666666666666655433 3555556666666666666666666555555433 2222222211
Q ss_pred ----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 227 ----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG----TQPT---ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 227 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
.|..-|...+..|....+.+-|.++-.-+.... +.|+ ..-|..+....++....+.-...|+.|.-. -
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~ 428 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-A 428 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-e
Confidence 122233344444444444444444433222110 1121 112333444444444444455555554433 3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
+-|+..+...++++..-.|.++-.-+++..++..
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 3444444444444444444444444444444333
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=8e-14 Score=120.51 Aligned_cols=423 Identities=12% Similarity=0.109 Sum_probs=317.8
Q ss_pred cCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047840 8 ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARA 87 (445)
Q Consensus 8 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 87 (445)
++++..|..+|++.+..+ ..+...|..-+..-.+..... .|+.+++..+..-+..|. .|-.-+.+--..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vN-hARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVN-HARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHh-HHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 567788999999988744 345555666677777888888 899999998885444343 34445555567799999999
Q ss_pred HhccCC--CCChhhHHHHHHHHHcCCChHHHHHHhccCC--CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-C-CCC
Q 047840 88 LFDKSP--DRDVVTWTTMVDGYGKMGDFENARELFEKMP--ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-G-MKP 161 (445)
Q Consensus 88 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~p 161 (445)
+|++-. +|+...|++.|+-=.+-+.++.|..++++.. .|++.+|-.....--+.|+...|.++|....+. | -..
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 999765 4899999999999999999999999999876 488889988888888999999999999988763 1 111
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--hhhhhHHHHHHHccCChHHHHHHh--------hcCCCC---C
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVVDMYSKCGHVHSALSVF--------EGISNK---D 228 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~--------~~~~~~---~ 228 (445)
+...+.+....-.+...++.|..+|+.+++.- |.+ ...|..+...--+-|+........ +.+... |
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 22344444444456677888999999888763 333 455555555555566655544433 222222 5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHh---hcCCcHHHHHHHHHHhHHhhCCCC
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET-------TFVAVLTTC---THAKMVRDGLNLFENMSAVYGVEP 298 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 298 (445)
-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.++++...+ -++.
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH 398 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH 398 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence 567888888888889999999999999876 565321 121111111 256889999999999985 3444
Q ss_pred ChhHHHHHHHHH----HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 299 QLEHYACVVDLL----ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 299 ~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
...|+.-+--.| .++.++..|.+++...+ |.-|-..++...|..-.+.++++....++++.++.+|.+..+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 566666554444 47889999999999887 777999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHHHHHhccc
Q 047840 375 SYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSN 443 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (445)
.+..-...|+++.|..+|.-.........|..-|-.+. .|-...+.++++..+|+.+-..+++.+
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI----dFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI----DFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh----hhhhhcchHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999988766666666664333 666777888888888888887777654
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=6.1e-15 Score=137.84 Aligned_cols=387 Identities=13% Similarity=0.053 Sum_probs=214.2
Q ss_pred CchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 047840 10 FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGE--DPFVVSSLLEFYSLVHKMGTARA 87 (445)
Q Consensus 10 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 87 (445)
.+..++.++......+ +-|+...+.|...+...|+++ .+..+...+....... -...|-.+.++|...|++++|..
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~-~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE-RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 3444555555544322 234555556666666666666 6666666665543211 12234556666666666666666
Q ss_pred HhccCCC--CC--hhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcC----CHhHHHHHHHHHHH
Q 047840 88 LFDKSPD--RD--VVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRIS----DFKEVLSLFRQMQE 156 (445)
Q Consensus 88 ~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~ 156 (445)
.|-+..+ ++ ...+-.+...+++.|+.+.+...|+++.. | +..+...|...|...+ ..+.|..++.+..+
T Consensus 329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 6655443 22 22344556666666666666666666543 2 2333334444444332 33444444444433
Q ss_pred c-------------------------------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCC
Q 047840 157 V-------------------------------------GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY---HLEK 196 (445)
Q Consensus 157 ~-------------------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 196 (445)
. +-.+.+...+.+...+...|++..|...|...... ...+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 2 22233344444444444444444444444444332 0111
Q ss_pred ch------hhhhHHHHHHHccCChHHHHHHhhcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047840 197 NV------ILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267 (445)
Q Consensus 197 ~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 267 (445)
+. .+-..+..++-..++.+.|.+.|..+.+..+. .|--+.......++..+|...++.....+ ..++..+
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ar 567 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNAR 567 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHH
Confidence 11 11222333334444444444444444332111 12222212222345556666666554432 1233333
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh------------cCChHHHHHHHHHHhcCCCCCCH
Q 047840 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR------------AGMVEEAEKFIEEKMGGLGGGDA 335 (445)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~ 335 (445)
..+...+.+...+..|..-|+.+.+.....+|+.+.-+|.+.|.+ .+..++|+++|.+.++.. +.|.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchh
Confidence 334445666666666666666555543344566666566665542 245678888998888877 7788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..-|-+...++..|++.+|..+|.++.+...+.+.+|..++.+|..+|+|..|.++|+...+.-.
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888899999999999999999987777777899999999999999999999888765543
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=2.3e-14 Score=133.11 Aligned_cols=323 Identities=12% Similarity=0.127 Sum_probs=249.9
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccC---CCCChhhHHHHHHHHHhcCCH
Q 047840 71 SLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKM---PERNAVSWSAIMAAYSRISDF 144 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 144 (445)
...+.....|++++|.+++.++++. ....|.+|...|-..|+.+++...+-.. ...|...|..+.....+.|++
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3334444459999999999988763 5678999999999999999988776443 334778888888889999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhh----hHHHHHHHccCChHHHHHH
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA----TAVVDMYSKCGHVHSALSV 220 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~ 220 (445)
++|.-.|.+.++.+ +++...+---...|-+.|+...|...|.++.....+.|..-+ ...++.+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999998864 456666666778888999999999999999887543333222 3345667777777888888
Q ss_pred hhcCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------------------CHHHHH
Q 047840 221 FEGISN-----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP---------------------------TETTFV 268 (445)
Q Consensus 221 ~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---------------------------~~~~~~ 268 (445)
++.... .+...++.++..|.+...++.+......+......+ +... .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 876654 245578899999999999999998888877622222 2222 1
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVE--PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
.++-++.+.+..+....+...+... .+. -+...|.-+.++|.+.|++.+|+.+|..+.....-.+...|-.+..+|.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 2333444555555555555555443 433 3467788899999999999999999999988765667889999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..|.+++|.+.|++++...|.+..+-..|+..+.+.|++++|.+.+..+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999876
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.71 E-value=3.6e-14 Score=129.50 Aligned_cols=277 Identities=10% Similarity=0.081 Sum_probs=190.4
Q ss_pred CCChHHHHHHhccCCCC--Chhh-HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChhHHHH
Q 047840 110 MGDFENARELFEKMPER--NAVS-WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV--SVLTACAHLGAITQGLW 184 (445)
Q Consensus 110 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 184 (445)
.|+++.|.+.+....+. ++.. |.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665442 2222 222234446777888888888777653 44543332 33556677788888888
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC---hh--------hHHHHHHHHHhcCChHHHHHHHH
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD---AG--------AWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~--------~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
.++.+.+.. |-++.+...+...|.+.|++++|..++..+.+.. .. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777765 5566777777777888888888887777665431 11 23333433344455566666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 047840 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333 (445)
Q Consensus 254 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 333 (445)
.+.+. .+.+......+..++...|+.++|..++++..+. +|+.... ++.+....++.+++.+..+...+.. +.
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 65443 3446777778888888899999999988888753 4554322 2333345588888999888888766 66
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
|+.....+...|.+.+++++|.+.|+++.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777888888999999999999999999998888753 567888899999999999888886543
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.5e-13 Score=115.66 Aligned_cols=332 Identities=13% Similarity=0.088 Sum_probs=238.8
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCC-hhhHHHHHHHHHh
Q 047840 62 FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERN-AVSWSAIMAAYSR 140 (445)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~ 140 (445)
...|.+.+-.....+.+.|....|+..|......-+..|.+.+...--..+.+.+..+...+...+ ...--.+..++..
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 344544444444555667778888888777666444444444433332333333333332222211 1111234456777
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--CCchhhhhHHHHHHHccCChHHHH
Q 047840 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL--EKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
..+.+++..-.......|.+-+...-+....+.....++++|+.+|+++.+... -.|..+|..++-.--...++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 778888888888888887665655555566666788899999999999998741 124556665543322222222111
Q ss_pred HHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC
Q 047840 219 SVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP 298 (445)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 298 (445)
...-.+.+--+.|..++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-++.+.+ -.+.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~ 396 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPR 396 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCch
Confidence 1122333445667777888888899999999999999886432 456677777789999999999999999995 3355
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
|-..|-.|..+|.-.+...-|+-+|++..... |.|...|.+|..+|.+.++.++|+..|.++...+-.+..++..++.+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 78899999999999999999999999998877 78999999999999999999999999999999888778899999999
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 047840 379 YKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~ 397 (445)
|.+.++.++|...+.+-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999998887765
No 35
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.7e-13 Score=116.92 Aligned_cols=380 Identities=11% Similarity=0.036 Sum_probs=252.1
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCC-cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhcCC
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPN-NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGED-PFVVSSLLEFYSLVHK 81 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 81 (445)
-|.++|++++|++.|.+.++ ..|| +.-|.....+|...|+|+ .+.+--...++ +.|+ +..+..-.+++...|+
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~-~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWE-KVIEDCTKALE--LNPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHH-HHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhcc
Confidence 46789999999999999998 5588 777888888889999999 66666555555 4444 3345555667777788
Q ss_pred HHHHHHHh------ccCCCCCh-hhHHHHHHHHHcCCChHHHHHHhccCCC---C-----------------------Ch
Q 047840 82 MGTARALF------DKSPDRDV-VTWTTMVDGYGKMGDFENARELFEKMPE---R-----------------------NA 128 (445)
Q Consensus 82 ~~~a~~~~------~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~-----------------------~~ 128 (445)
+++|+.-. +....... .....++ -+.| ...+.+-+..-+. | ..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~L---kk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVL---KKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHH---HHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 87765321 11110000 0000000 0000 1111122221000 1 11
Q ss_pred hhHHHHHHHHHh--cC---CHhHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 129 VSWSAIMAAYSR--IS---DFKEVLSLFRQMQEV---GMKPN---------ESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 129 ~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~---~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
.....+..++.. .+ .+..|...+.+-... ....+ ..+.......+.-.|+.-.+..-|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 112222222111 11 344444443332110 01111 12222222334556788899999999988
Q ss_pred cCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047840 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268 (445)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 268 (445)
.. +.+...|-.+..+|...++.++....|++..+ .++.+|..-.+.+.-.+++++|..-|++.+.... -+...|.
T Consensus 355 l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~i 432 (606)
T KOG0547|consen 355 LD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYI 432 (606)
T ss_pred cC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHH
Confidence 76 33344477778889999999999999987654 4777899988988889999999999999988632 2566777
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC-----CC--HHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG-----GD--ANVWGAL 341 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~--~~~~~~l 341 (445)
.+.-+..+.++++++...|++..+ .++..+..|+.....+...+++++|.+.|+..++.... .+ +.+--.+
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 777777788999999999999998 55666889999999999999999999999998755311 12 2222233
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+..-.+ +++..|..+++++++.+|....++..|+..-.+.|+.++|+++|++-..
T Consensus 511 l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 511 LVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 322233 8999999999999999999888999999999999999999999998654
No 36
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=1.9e-12 Score=116.41 Aligned_cols=366 Identities=13% Similarity=0.089 Sum_probs=279.3
Q ss_pred cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C-ChhhHHHHHHHHH
Q 047840 32 TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R-DVVTWTTMVDGYG 108 (445)
Q Consensus 32 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 108 (445)
||..-...|.+.+.++ .++.+|...++. ++-+...|......--..|..+....+|++... | ....|-....-+-
T Consensus 518 tw~~da~~~~k~~~~~-carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIE-CARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHH-HHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 4444455555555566 666666666653 344556666666666666777777777776654 2 3445666666677
Q ss_pred cCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 047840 109 KMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 185 (445)
..|+...|..++...-+ | +...|-+-+.....+.+++.|..+|.+... ..|+...|.--++...-.++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 78888888888877654 3 566777888888888889999998888766 457777777777777778888999999
Q ss_pred HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047840 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 262 (445)
+++.++.- +.-...|..+.+.+-+.++.+.|...|..-.+ | .+..|-.+...--+.|.+-.|..++++....+.+
T Consensus 674 lEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk- 751 (913)
T KOG0495|consen 674 LEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK- 751 (913)
T ss_pred HHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-
Confidence 98888762 44456777888888888899999888876554 3 4557777777777888899999999988877544
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...|...+..=.+.|+.+.|..+..+..+ .++.+...|..-|....+.++-.+....+++. ..|+.+...+.
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia 824 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIA 824 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHH
Confidence 777888888888889999999998888886 55667777887777777777766666666554 57888888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEEC
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVN 412 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 412 (445)
..+....++++|.+.|.+++..+|++..+|..+...+.+.|.-++-.+++.+... -.|.-|..|.-++
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avS 892 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHh
Confidence 9999999999999999999999999988999999999999999999999988764 3566777776555
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.8e-14 Score=129.75 Aligned_cols=277 Identities=13% Similarity=0.052 Sum_probs=193.4
Q ss_pred ChHHHHHHhccCCC--CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCChhHHHHH-
Q 047840 112 DFENARELFEKMPE--RN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM--KPNESGLVSVLTACAHLGAITQGLWV- 185 (445)
Q Consensus 112 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~- 185 (445)
+..+|...|.+++. +| ......+..+|...+++++|.++|+...+... .-+..+|.+.+..+-+. -+..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45677777777554 22 33445567778888888888888887765320 11556777766554321 12222
Q ss_pred HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047840 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 262 (445)
-+.+.+.. +..+.+|.++.++|.-.++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+........
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 23333333 556778888888888888888888888877654 3456777777777788888888888877543111
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
+-..|..+...|.+.++++.|+-.|+.+.. +.|. ......+...+.+.|+.++|+.+++++.... +.|+..--.-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 223444555668888888888888888874 3453 5555667777888888888999888887766 5566655556
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+..+...+++++|+..++++.+.-|++...+..++..|.+.|+.+.|..-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 667778888889999999998888888888888888999999888888877766543
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=6e-14 Score=126.43 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=220.5
Q ss_pred CHHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC------CChhhHHHHHHHHHhcCCHhHHHHHH
Q 047840 81 KMGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE------RNAVSWSAIMAAYSRISDFKEVLSLF 151 (445)
Q Consensus 81 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 151 (445)
+..+|...|++... + ...+...+..+|...+++++|.++|+.+.+ .+...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 56788888888544 2 445667788999999999999999999875 377888888876643 2333333
Q ss_pred H-HHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChh
Q 047840 152 R-QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230 (445)
Q Consensus 152 ~-~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 230 (445)
. .+.+.. +-.+.+|.++.++|.-+++.+.|++.|+++.+.+ +....+|+-+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 3 334432 4467899999999999999999999999999875 447788888888899999999999999998887776
Q ss_pred hHHH---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHH
Q 047840 231 AWNA---MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACV 306 (445)
Q Consensus 231 ~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 306 (445)
.|++ +...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+++++++... .| |+..--..
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l---d~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL---DPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc---CCCCchhHHHH
Confidence 6555 567899999999999999999886432 6677777888888999999999999999843 33 33333345
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
+..+...++.++|+..++++++.- +.+..++..++..|.+.|+.+.|+.-|-.+.+++|...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 566778899999999999998654 55667788888999999999999999999999999743
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=8e-13 Score=120.69 Aligned_cols=277 Identities=14% Similarity=0.036 Sum_probs=216.4
Q ss_pred cCCHHHHHHHhccCCCC--ChhhHHHH-HHHHHcCCChHHHHHHhccCCC--CChhhHH--HHHHHHHhcCCHhHHHHHH
Q 047840 79 VHKMGTARALFDKSPDR--DVVTWTTM-VDGYGKMGDFENARELFEKMPE--RNAVSWS--AIMAAYSRISDFKEVLSLF 151 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~ 151 (445)
.|+++.|.+.+....+. ++..+..+ ..+..+.|+++.|...|.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 69999999998876553 23333333 4444789999999999999876 3433222 3366889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch-------hhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV-------ILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 152 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
+++.+.+ +-++.....+...|.+.|++++|..++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998865 336788889999999999999999999999998754332 13333444444556677777787777
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh
Q 047840 225 SN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301 (445)
Q Consensus 225 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (445)
++ .++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+. .+-|..
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHH
Confidence 54 47788899999999999999999999998874 4455322 233444569999999999999875 244566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
.+..+...+.+.+++++|.+.|+...+. .|+...+..+..++...|+.++|.+++++....
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6788999999999999999999999865 599999999999999999999999999998764
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=7.6e-16 Score=134.37 Aligned_cols=252 Identities=14% Similarity=0.176 Sum_probs=105.1
Q ss_pred HHHHHcCCChHHHHHHhccC-CC---C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047840 104 VDGYGKMGDFENARELFEKM-PE---R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA 178 (445)
Q Consensus 104 ~~~~~~~g~~~~A~~~~~~~-~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (445)
...+.+.|++++|++++++. .. | +...|..+.......++++.|.+.|+++...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 34444555555555555322 11 1 3333444445555566666666666666654322 34445555554 56666
Q ss_pred hhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC-----CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS-----NKDAGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
+++|..++....+. .+++..+..++..+.+.++++++..+++.+. +.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666555443 2345555566666777777777777766532 2356677788888889999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 047840 254 RMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333 (445)
Q Consensus 254 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 333 (445)
+..+..+ -|......++..+...|+.+++..+++...+. .+.++..+..+..+|...|+.++|+.+|++..... +.
T Consensus 171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 9988632 25677888888899999999999999888864 25566778889999999999999999999988766 67
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
|+.....+..++...|+.++|.++.+++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 889999999999999999999998887754
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=2.3e-12 Score=118.39 Aligned_cols=128 Identities=12% Similarity=0.047 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--HH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH---YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA--NV 337 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 337 (445)
+...+..+...+...|+.++|.+++++..+. .|+... .....-.....++.+.+.+.++...+.. +.|+ ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHH
Confidence 4445555555555555555565555555543 222221 0111111122345555555555555443 3333 44
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH--HHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRK--LAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
..++...+.+.|++++|.+.|+. ..+..|++. .+..++..+.+.|+.++|.+++++-
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55566666666666666666663 444444332 3446666666666666666666554
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=1.2e-11 Score=111.37 Aligned_cols=294 Identities=10% Similarity=0.056 Sum_probs=219.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
+|..-...|.+.+.++-|..+|....+ | +...|......--..|..+....+|++.... ++-....|....+.+-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHh
Confidence 455555566666667777777766654 2 4556766666666778888888888888775 34455666666777788
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
.|++..|..++..+.+.. +.+..++.+-+........++.|..+|.+... ++...|..-+....-.++.++|+++++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 899999999998888875 45778888888888899999999999987654 566677777777777888999999998
Q ss_pred HHHHcCCCCCH-HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 047840 254 RMVKSGTQPTE-TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 254 ~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (445)
+..+. -|+- ..|..+...+-+.++.+.|...|..-.+ .++..+..|-.|...=-+.|.+-+|..++++..-.+ +
T Consensus 676 e~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 676 EALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 88775 4443 4566666778888888888888877664 445556777777777778888999999999887777 7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------------------chhHHHHHHHHHHc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD------------------------------FSTHVLSYNIYKEA 382 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------------------------~~~~~~l~~~~~~~ 382 (445)
.+...|...|+.-.+.|+.+.|..+..++++.-|.+ +.....++..+...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 788889999999999999988888877776644433 33455566667777
Q ss_pred CChHHHHHHHHHHHhcC
Q 047840 383 GWDMEANKVRKLISETG 399 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~~ 399 (445)
.+++.|.+.|.+..+.+
T Consensus 831 ~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKD 847 (913)
T ss_pred HHHHHHHHHHHHHHccC
Confidence 77778888777766543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=8.5e-13 Score=121.19 Aligned_cols=284 Identities=13% Similarity=0.037 Sum_probs=209.3
Q ss_pred HhcCCHHHHHHHhccCCC--CCh-hhHHHHHHHHHcCCChHHHHHHhccCCC--CCh--hhHHHHHHHHHhcCCHhHHHH
Q 047840 77 SLVHKMGTARALFDKSPD--RDV-VTWTTMVDGYGKMGDFENARELFEKMPE--RNA--VSWSAIMAAYSRISDFKEVLS 149 (445)
Q Consensus 77 ~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~ 149 (445)
...|+++.|.+.+.+..+ |++ ..+-....+..+.|+++.|.+.+.+..+ |+. ...-.....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 357999999999987655 332 2334445677788999999999998754 443 233445788889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhh-------HHHHHHHccCChHHHHHHhh
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILAT-------AVVDMYSKCGHVHSALSVFE 222 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~ 222 (445)
.++.+.+.. +-+...+..+...+...|+++.|...+..+.+.+..+...... .++..-......+.....+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 3367788899999999999999999999999987543332211 11111122233445555666
Q ss_pred cCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHhhcCCcHHHHHHHHHHhHHhhCC
Q 047840 223 GISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT--F-VAVLTTCTHAKMVRDGLNLFENMSAVYGV 296 (445)
Q Consensus 223 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (445)
..++ .++..+..+...+...|+.++|.+.+++..+.. ||... + ..........++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6554 378889999999999999999999999998863 34332 1 11222234457888999999888865222
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.|+.....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2221556688899999999999999999544445578998899999999999999999999999866
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=3.8e-12 Score=118.72 Aligned_cols=351 Identities=11% Similarity=0.055 Sum_probs=249.4
Q ss_pred hcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 86 (445)
..|+.++|.+++.+.+... +.+...|..|...|-..|+.+ .+...+-.+.. -.+.|...|..+.....+.|++++|.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~e-K~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIE-KALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHH-HHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3499999999999998754 457778999999999999988 77766544333 34556788999999999999999999
Q ss_pred HHhccCCCCChh---hHHHHHHHHHcCCChHHHHHHhccCCCCCh----h----hHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 87 ALFDKSPDRDVV---TWTTMVDGYGKMGDFENARELFEKMPERNA----V----SWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 87 ~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
-+|.+..+.++. .+-.-...|-+.|+...|...|.++...++ . .--..++.+...++.+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999987764333 334446778899999999999888865222 1 22334667777888899999988876
Q ss_pred Hc-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC---------------------------CCchhhhhHHHHH
Q 047840 156 EV-GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHL---------------------------EKNVILATAVVDM 207 (445)
Q Consensus 156 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~ 207 (445)
.. +-..+...+++++..+.+...++.+............ .++..++ .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 62 2344566788888888888889988887777765211 1222221 12222
Q ss_pred H--HccCChHHHHHHhhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH
Q 047840 208 Y--SKCGHVHSALSVFEGISN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281 (445)
Q Consensus 208 ~--~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 281 (445)
+ .+.++..+++..|-.... .++..|.-+..+|...|++.+|+.+|..+...-..-+...|..+..+|...|..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 2 333444444444332222 2556788888899999999999999999887755556778888888899999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh--------cCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM--------GGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+|.+.|+.+... -+.+...--.|...+.+.|+.++|.+++..+. ..+..|+..........+.+.|+.++
T Consensus 467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999998853 23335555677778888999999999988853 22344555556666677788888877
Q ss_pred HHHHHHHHHH
Q 047840 354 GNRVWRKLAE 363 (445)
Q Consensus 354 a~~~~~~~~~ 363 (445)
-+.....++.
T Consensus 545 fi~t~~~Lv~ 554 (895)
T KOG2076|consen 545 FINTASTLVD 554 (895)
T ss_pred HHHHHHHHHH
Confidence 6666555554
No 45
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=7.9e-12 Score=107.10 Aligned_cols=362 Identities=12% Similarity=0.118 Sum_probs=249.6
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC----CChhhHHHHHHHHHcCCChHHHHHHhccCC----CCChhhHHH
Q 047840 62 FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD----RDVVTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSA 133 (445)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 133 (445)
.+.+..++..++.+.++.-..+.|.+++++... -+..++|.+|.+-.-..+ .+++.+|. .||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHH
Confidence 456778899999999999999999999987654 377788888876544333 44555554 589999999
Q ss_pred HHHHHHhcCCHhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhH-HHHHHHHHHHc--C--CC----Cchhh
Q 047840 134 IMAAYSRISDFKE----VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ-GLWVHSYAKRY--H--LE----KNVIL 200 (445)
Q Consensus 134 l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~--~--~~----~~~~~ 200 (445)
++.+..+.|+++. |++++.+|.+-|+.|.-.+|..+|..+++.++..+ +..++.++... | ++ .+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 45678889999999999999999999999888754 44555555432 2 22 24456
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCC--------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISN--------K---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA 269 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 269 (445)
|...+..|.+..+.+-|.++-.-+.. + ...-|..+....|+....+..+..|+.|...-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 66777788888888888877654432 1 123456677788888899999999999988888899999999
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-C-------------------hHHH-HHHHHHHhc
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG-M-------------------VEEA-EKFIEEKMG 328 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~-------------------~~~A-~~~~~~~~~ 328 (445)
++++..-.+.++-.-++|..+..- |..-+.....-+...+++.. + +.++ ...-.++..
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~ 517 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA 517 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 999999999998888888887754 43333333333333333322 1 1111 111122332
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCc--hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccC
Q 047840 329 GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG---ITDF--STHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403 (445)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 403 (445)
. .-.....+...-.+.+.|..++|-+++....+.+ |..+ .+...+.+.-.+.+....|..+++-|...+....
T Consensus 518 ~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 518 Q--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred c--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 2 3445567777778899999999999999987633 2222 2233566677778899999999999987776543
Q ss_pred CcccEEEECCeEeEEecCCCCcchhhHHHHHHHHH
Q 047840 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438 (445)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (445)
.+ +......+.....+-.++...+.++
T Consensus 596 E~--------La~RI~e~f~iNqeq~~~ls~l~~L 622 (625)
T KOG4422|consen 596 EG--------LAQRIMEDFAINQEQKEALSNLTAL 622 (625)
T ss_pred hH--------HHHHHHHhcCcCHHHHHHHhhhhhh
Confidence 22 2222333334444445555555444
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.7e-12 Score=105.91 Aligned_cols=212 Identities=13% Similarity=0.136 Sum_probs=112.8
Q ss_pred cCCHHHHHHHhccCCCCChhhH---HHHHHHHHcCCChHHHHHHhccCCCCChh-------hHHHHHHHHHhcCCHhHHH
Q 047840 79 VHKMGTARALFDKSPDRDVVTW---TTMVDGYGKMGDFENARELFEKMPERNAV-------SWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~ 148 (445)
+.+.++|...|-+|.+-|+.++ -+|.+.|-+.|..|.|+++-+.+.+.... ....|..-|...|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4666777777776665444433 35666666677777777776666542222 2234455566677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch----hhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV----ILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+|..+.+.+ ..-......|+..|-...+|++|+..-+++.+.+..+.. ..|..|...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 7777666543 223445666677777777777777777666665533321 23344444444444555555555444
Q ss_pred CCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 225 SNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 225 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
... .+.+--.+...+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++....+..+.
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 332 1222233334444455555555555555444333333444444445555555555555444444
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.58 E-value=1.3e-11 Score=105.05 Aligned_cols=279 Identities=11% Similarity=0.060 Sum_probs=154.0
Q ss_pred CCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 047840 110 MGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186 (445)
Q Consensus 110 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (445)
.|++.+|++...+-.+. ....|-.-+.+--..|+.+.+-.++.+..+..-.++...+.+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555554331 222333334444555666666666655554322334444445555555666666666655
Q ss_pred HHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC-----------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD-----------AGAWNAMISGVAMNGDAKKSLELFDRM 255 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m 255 (445)
.++.+.+ +-++.+.....++|.+.|++.....++.++.+.. ..+|..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555554 3445555555666666666666666665555421 124555555544444444444455554
Q ss_pred HHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH
Q 047840 256 VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335 (445)
Q Consensus 256 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 335 (445)
... .+-++..-.+++.-+.+.|+.++|.++.++..+. +..|+.. . .-.+.+-++...-.+..+...... +.++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 333 3334444555566666667777777766666655 4444411 1 112344555555555555554443 4455
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..+.+|...|.+.+.+.+|...|+.+++..|. ...+..++.++.+.|+..+|.++.++...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66666777777777777777777766666654 34566677777777777777776666553
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=4.4e-12 Score=104.74 Aligned_cols=291 Identities=11% Similarity=0.086 Sum_probs=216.2
Q ss_pred cCCChHHHHHHhccCCCCChhh---HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCChhHH
Q 047840 109 KMGDFENARELFEKMPERNAVS---WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE---SGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a 182 (445)
-+++.++|.+.|-+|.+.|+.+ .-+|.+.|.+.|..|.|+++.+.+.++.--+.. .....|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3578899999999998765554 457889999999999999999988764211111 2344566778999999999
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhh--------HHHHHHHHHhcCChHHHHHHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGA--------WNAMISGVAMNGDAKKSLELFDR 254 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~ 254 (445)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+... |--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998765 3345667789999999999999999988776543333 44455555667899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 047840 255 MVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334 (445)
Q Consensus 255 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 334 (445)
..+.+.+ ....-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++.+.. +.
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 8886432 2333334556688899999999999999976 433346677889999999999999999999988765 44
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH---HcCChHHHHHHHHHHHhcCCccCCc
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK---EAGWDMEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~ 405 (445)
...-..+...-....-.+.|...+.+-+...|.- ..+..++.... ..|.+.+...+++.|....++.+|.
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 4444555555555666788888888888888863 34444544433 2456888888999998877777664
No 49
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.4e-10 Score=100.95 Aligned_cols=382 Identities=11% Similarity=0.090 Sum_probs=289.4
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCCcc-cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 6 MQANFPKLSVFCYLDMLDMGFEPNNY-TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
.++.....|..++++... +-|-+. .|--.+..--..|+.. .|+++|+.-.. ..|+...|++.++.-.+...++.
T Consensus 118 mknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~-gaRqiferW~~--w~P~eqaW~sfI~fElRykeier 192 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIA-GARQIFERWME--WEPDEQAWLSFIKFELRYKEIER 192 (677)
T ss_pred HhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccH-HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHH
Confidence 466778888888888876 334333 2333444445678999 99999998776 78999999999999999999999
Q ss_pred HHHHhccC--CCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 85 ARALFDKS--PDRDVVTWTTMVDGYGKMGDFENARELFEKMPER------NAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 85 a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
|..++++. ..|++.+|--...-=.+.|+...|..+|....+. +...+.+....-..+..++.|.-+|.-.++
T Consensus 193 aR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 193 ARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999985 4589999988888888999999999999887651 334456666666677889999999988877
Q ss_pred cCCCCC--HHHHHHHHHHHHccCChhHHHHH--------HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC
Q 047840 157 VGMKPN--ESGLVSVLTACAHLGAITQGLWV--------HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN 226 (445)
Q Consensus 157 ~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 226 (445)
. ++.+ ...|......--+.|+....... |+...+.+ +.|-.+|--.+..-...|+.+...++|++...
T Consensus 273 ~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 273 H-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred h-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 5 3333 45566666665666765544432 34444443 55666777777777888999999999987754
Q ss_pred CC--h---hhHHHHH--------HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh----hcCCcHHHHHHHHHH
Q 047840 227 KD--A---GAWNAMI--------SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC----THAKMVRDGLNLFEN 289 (445)
Q Consensus 227 ~~--~---~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~ 289 (445)
.- . ..|.-.| -.-....+.+.+.++|+...+. ++...+||.-+--.| .++.++..|.+++..
T Consensus 351 nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 351 NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 21 1 1121111 1123467899999999998884 555667776554444 367889999999999
Q ss_pred hHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--
Q 047840 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-- 367 (445)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 367 (445)
.. |.-|...++...|..=.+.++++.+..+|++.++-+ |.|..+|......-...|+.+.|..+|+-+++...-
T Consensus 430 AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 430 AI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred Hh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 88 889999999999999999999999999999999887 778899999999889999999999999999874432
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
....+-..++.-...|.++.|..+++++.+..
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 23456677888888999999999999998653
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.5e-11 Score=105.56 Aligned_cols=381 Identities=14% Similarity=0.026 Sum_probs=264.6
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
+.-+.++..|.-+-++....+ -|+..--.+..++.-.|++. .|-.+...-.- ...|.........++.+..+++.
T Consensus 26 ~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~-ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~ 100 (611)
T KOG1173|consen 26 ALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYE-RAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQ 100 (611)
T ss_pred HHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHH-HHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777766544 34444445777777777777 55544432211 24567777788889999999999
Q ss_pred HHHHhccCCC---------CC--------hhh----HHHH-------HHHHHcCCChHHHHHHhccCCC-----------
Q 047840 85 ARALFDKSPD---------RD--------VVT----WTTM-------VDGYGKMGDFENARELFEKMPE----------- 125 (445)
Q Consensus 85 a~~~~~~~~~---------~~--------~~~----~~~l-------~~~~~~~g~~~~A~~~~~~~~~----------- 125 (445)
|..++..... .+ ..- -+.- ...|....+.++|...|.+...
T Consensus 101 al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~ 180 (611)
T KOG1173|consen 101 ALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEK 180 (611)
T ss_pred HHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHH
Confidence 9999983210 01 000 0000 1123333344444444333210
Q ss_pred -------------------------------------------------------------CChhhHHHHHHHHHhcCCH
Q 047840 126 -------------------------------------------------------------RNAVSWSAIMAAYSRISDF 144 (445)
Q Consensus 126 -------------------------------------------------------------~~~~~~~~l~~~~~~~~~~ 144 (445)
.++........-+...+++
T Consensus 181 lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f 260 (611)
T KOG1173|consen 181 LVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRF 260 (611)
T ss_pred HHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChH
Confidence 1222233334455667788
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+..++.+...+.. +++...+..-|..+...|+..+-..+-.++.+.- |..+.+|-++.-.|.-.|+.++|++.|.+.
T Consensus 261 ~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKa 338 (611)
T KOG1173|consen 261 KECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKA 338 (611)
T ss_pred HHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHH
Confidence 88888888877653 5566666667777888888877777777777663 666788888888888889999999999876
Q ss_pred CCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-Ch
Q 047840 225 SNKD---AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QL 300 (445)
Q Consensus 225 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~ 300 (445)
..-| ...|-.+...|+-.|.-++|+..+....+. ++-..-.+--+.--|.+.++.+.|.++|.+... +-| |+
T Consensus 339 t~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a---i~P~Dp 414 (611)
T KOG1173|consen 339 TTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA---IAPSDP 414 (611)
T ss_pred hhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh---cCCCcc
Confidence 6543 458999999999999999999988877664 111112222344458888999999999999884 444 56
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcC----C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGG----L--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
...+-+.-.....+.+.+|..+|+..+.. + ...-..+++.|+.+|.+.+++++|+..+++.+...|.++.++..
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~as 494 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHAS 494 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHH
Confidence 66677766677789999999999876521 1 11234578999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q 047840 375 SYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++-+|...|+++.|.+.|.+..
T Consensus 495 ig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 495 IGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999888754
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9.2e-12 Score=107.73 Aligned_cols=283 Identities=12% Similarity=0.088 Sum_probs=156.6
Q ss_pred HHHHhcCCHHHHHHHhccCCC---C-ChhhHHHHHHHHHcCCChHHHHHHhccCCCC------ChhhHHHHHHHHHhcCC
Q 047840 74 EFYSLVHKMGTARALFDKSPD---R-DVVTWTTMVDGYGKMGDFENARELFEKMPER------NAVSWSAIMAAYSRISD 143 (445)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~ 143 (445)
.++......+++..-.+.... | +...-+....+.....++++|+.+|+++.+. |..+|..++-.- ..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--NDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hhh
Confidence 444444555555554443332 1 2222222333344556677777777766542 455565554332 221
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhc
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
.. +..+-+-...=-+--+.|+.++.+-|+-.++.++|..+|++.++.+ +....+|+-+.+-|....+...|.+.++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 1111111110012234466666666666777777777777777665 44556666666667777777777777765
Q ss_pred CCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 047840 224 ISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300 (445)
Q Consensus 224 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (445)
..+ .|-.+|-.+.++|.-.+...-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|...... -..+.
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~ 466 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEG 466 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccch
Confidence 443 355666677777777777777777777666642 225666777777777777777777777776652 23345
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhc----CCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMG----GLGG-G-DANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
..+..|.+.|-+.++.++|...|...++ .|.. | ......-|..-+.+.+++++|.........-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 6666677777777777777666665433 1211 2 1122223445555666666666555555443
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.53 E-value=6.7e-12 Score=106.75 Aligned_cols=198 Identities=12% Similarity=0.040 Sum_probs=149.7
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
...+..+...+...|++++|...+++... .+...+..+...+...|++++|.+.+++..+... .+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHH
Confidence 34455556666666666666666665432 2345666677778888888888888888777532 3556677777778
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
...|++++|...++..............+..+..++...|++++|...+.+..... +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 88889999998888887541222334566677888889999999999999988765 45677888888999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
...++++.+..|.++..+..++..+...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988777777888888899999999999998887754
No 53
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=1.2e-11 Score=115.01 Aligned_cols=270 Identities=15% Similarity=0.092 Sum_probs=149.0
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC
Q 047840 16 FCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR 95 (445)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 95 (445)
+++-.+...|+.|+..||..+|..||..|+.+ .|- +|..|.....+.+...++.++......++.+.+. .|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdie-aat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIE-AAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCc-ccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CC
Confidence 56778888999999999999999999999999 777 9999988888888999999999888888877665 77
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQ-EVGMKPNESGLVSVLTACA 174 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~ 174 (445)
.+.+|..|..+|...||...- +..++ ....+...+...|.-.....++.... ..+.-||..+. +.-..
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~f-e~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv 150 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLILF-EVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLV 150 (1088)
T ss_pred chhHHHHHHHHHHhccchHHH-HHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHH
Confidence 888999999999999987652 22111 11122223333333333333332221 11122232211 11112
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc-cCChHHHHHHhhcCCC-CChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-CGHVHSALSVFEGISN-KDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
..|-++.+.+++..+--.... .+... .++-... ...+++-........+ +++.++.+.+..-...|+.+.|..++
T Consensus 151 ~eglwaqllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 222233333333222111000 00000 0111111 1112222222222222 45555666666555666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
.+|.+.|++.+.+-|..++-+ .++..-++.++.-|... |+.|+..|+...+..+..
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhc
Confidence 666666665555555555444 44555555555555544 666666665544444444
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=7e-11 Score=100.70 Aligned_cols=254 Identities=12% Similarity=0.033 Sum_probs=210.6
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHH
Q 047840 140 RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALS 219 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 219 (445)
-.|+|.+|.++..+-.+.+-. ....|..-..+....|+.+.+-.++.++-+..-.++..+.-+..+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 369999999999998776633 3445666677788999999999999999987546677777888888999999999998
Q ss_pred HhhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 220 VFEGIS---NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE-------TTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 220 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
-+.++. ..++.......++|.+.|++.....++.++.+.|.--++ .++..++.-....+..+.-...|+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 877654 457889999999999999999999999999999875554 3677778777777777777778888
Q ss_pred hHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 290 MSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
... ..+-++..-.+++.-+.++|+.++|.++..+..+.+..|. ....-.+.+.++...-++..++-....|+++
T Consensus 255 ~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 876 4456677777889999999999999999999988875555 2233456788899999999999999999999
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..+..|+..|.+.+.|.+|.+.|+...+.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999997766544
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=3.8e-11 Score=114.60 Aligned_cols=263 Identities=12% Similarity=-0.006 Sum_probs=183.3
Q ss_pred ChhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------ccCChhHHHHHHHHHHH
Q 047840 127 NAVSWSAIMAAYSR-----ISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACA---------HLGAITQGLWVHSYAKR 191 (445)
Q Consensus 127 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 191 (445)
+...|...+.+... .+++++|...|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555555555322 23467999999998875 454 455555554443 23457899999999998
Q ss_pred cCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047840 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268 (445)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 268 (445)
.+ +.+...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..+++..+.+.. +...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 86 55778888888889999999999999988654 34567888888999999999999999999886433 222333
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
.++..+...|++++|...++++... . +| +...+..+..++...|++++|...+.++.... +.+....+.+...+..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 3444566678999999999988753 2 34 34556777888889999999999998875443 3334455666666676
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.| +.|...++++.+..-..+.........|.-.|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4788877777663322222222366677777887777766 7777654
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.44 E-value=9e-11 Score=99.77 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=124.4
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHH
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (445)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~------ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVL------ 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH------
Confidence 4456666677777777777777777766542 2245555666666666667777666666666543 2233333
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
..+...+...|++++|...+++....... .....+..+...+...|++++|...
T Consensus 103 -------------------------~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 103 -------------------------NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------------HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444455555555555555555543211 1233455556666777777777777
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
+++.... .+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+.++|..+.+.+....
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7777653 22335566667777777788888887777776653 4556666666777777777777777777665543
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.7e-11 Score=101.48 Aligned_cols=227 Identities=10% Similarity=0.014 Sum_probs=170.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcC
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAGAWNAMISGVAMNG 243 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 243 (445)
+.+.++|.+.|.+.+|++.++..++. .|.+.+|..|..+|.+..++..|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45666677777777777777666665 45555666667777777777777777766554 2 3333344556677778
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 323 (445)
+.++|.++|+...+.. +.+......+...|.-.++++-|..+|+++.+. |+ .++..|+.+.-+|.-.++++-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 8888888888887753 335566666677777888888888888888876 64 45677888888888888888888888
Q ss_pred HHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 324 EEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 324 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++....--.|+ ..+|-.+.......|++..|.+.|+-.+..++++...++.|+..-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 88776543454 3568888888888899999999999999999998889999999999999999999998877653
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=7.4e-10 Score=101.18 Aligned_cols=234 Identities=16% Similarity=0.190 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCCch-hhhhHHHHHHHccCChHHHHHHhhcCCC-------C-
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRY-----H-LEKNV-ILATAVVDMYSKCGHVHSALSVFEGISN-------K- 227 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~- 227 (445)
..+...+...|...|+++.|+.+++...+. | ..|.. ...+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456667888899999999999998888765 2 12232 3334577788899999999888887643 1
Q ss_pred ---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhC--
Q 047840 228 ---DAGAWNAMISGVAMNGDAKKSLELFDRMVKS-----G-TQPTET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYG-- 295 (445)
Q Consensus 228 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 295 (445)
-..+++.|..+|.+.|++++|...+++..+- | ..|... .++.+...|...+++++|..++....+.+-
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2346777888899999999988888775431 2 122222 355666678899999999999987776533
Q ss_pred CCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 047840 296 VEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGG---GDANVWGALLSACRIYGKIEVGNRVWRKLAE- 363 (445)
Q Consensus 296 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 363 (445)
+.++ ..+++.|...|...|++++|.+++++++.. +.. -....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 467889999999999999999999987542 111 2245788899999999999999999988765
Q ss_pred ---hCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 364 ---MGITD---FSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 364 ---~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+|.+ ..+|..|+..|.+.|+++.|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55554 4467789999999999999999888875
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.4e-11 Score=100.62 Aligned_cols=230 Identities=11% Similarity=0.115 Sum_probs=201.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc
Q 047840 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211 (445)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (445)
+.+.++|.+.|.+.+|.+.++..... .|-+.||..|-++|.+..++..|+.++.+-.+.- |.++....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 67889999999999999999998875 6778899999999999999999999999988763 66777777788889999
Q ss_pred CChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 212 GHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 212 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
++.++|.++|+...+ .++.+..++...|.-.++++-|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998765 36667777888899999999999999999999986 88889999999999999999999999
Q ss_pred HhHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 289 NMSAVYGVEPQ--LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 289 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+.... --.|+ ..+|-.+.......|++.-|.+.|+-.+..+ ..+...++.|...-.+.|++++|..++..+....|
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 88864 33344 5677788888888999999999999988777 66788999999999999999999999999999888
Q ss_pred C
Q 047840 367 T 367 (445)
Q Consensus 367 ~ 367 (445)
.
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 6
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.8e-09 Score=90.55 Aligned_cols=270 Identities=10% Similarity=0.007 Sum_probs=193.1
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHH---HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 95 RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWS---AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLT 171 (445)
Q Consensus 95 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 171 (445)
.|+.....+..++...|+.++|...|++..--|+.+.. .....+.+.|+.+....+...+.... +-+...|-.-+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 46777788888888889999999888887654333322 22334557788888888777776531 234455555555
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 047840 172 ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 172 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 248 (445)
.....++++.|..+-++.++.+ +.+...+-.-...+...|+.+.|.-.|+.... -+...|.-|+.+|...|++.+|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence 6667788888888888888765 34455555555677888888888888875543 3677899999999999999988
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-HHh-hcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVL-TTC-THAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
.-+-+...+. ++.+..+.+.+. ..| ....--++|..+++... .+.|+ ....+.+...+...|..+++..++++
T Consensus 388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 8877766554 344566665552 222 23334577888888777 34666 44556777888888999999999988
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 326 KMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
.+. ..||....+.|.+.+...+.+++|++.|..+++.+|.+..+.
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 764 358888889999999999999999999999999998875433
No 61
>PRK12370 invasion protein regulator; Provisional
Probab=99.39 E-value=1e-10 Score=111.65 Aligned_cols=230 Identities=11% Similarity=0.017 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHH-----ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH---------ccCChHHHHHHhhcCCC-
Q 047840 162 NESGLVSVLTACA-----HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS---------KCGHVHSALSVFEGISN- 226 (445)
Q Consensus 162 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~- 226 (445)
+...|...+.+-. ..+++++|...+++..+.. |.+...+..+..++. ..+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555555532 2245779999999999875 445556666665544 23458899999987765
Q ss_pred --CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-hHH
Q 047840 227 --KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-EHY 303 (445)
Q Consensus 227 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 303 (445)
.+..++..+...+...|++++|+..|++..+.+ +.+...+..+...+...|++++|...++++.+. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 366788888889999999999999999998874 224567778888899999999999999999864 5543 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
..++..+...|++++|...++++.+...+.++..+..+..++...|+.++|...++++....|.+......++..|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34444566789999999999998766523355667788888999999999999999988888887777888888888888
Q ss_pred ChHHHHHHHHHHHhc
Q 047840 384 WDMEANKVRKLISET 398 (445)
Q Consensus 384 ~~~~A~~~~~~m~~~ 398 (445)
+.|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4788877777653
No 62
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=9.5e-10 Score=92.36 Aligned_cols=392 Identities=11% Similarity=-0.007 Sum_probs=231.5
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMG 83 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (445)
-+....|+..|+.+++.-...+-.-...+-..+..++...|+++ +|...+..+.... .++...+..|..++.-.|.+.
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~-~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYE-EALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHH-HHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 45567788899998887664432222222233445567889999 8888888877743 566666777777777788999
Q ss_pred HHHHHhccCCCC---------------Chhh--------------HHHHHHHHHcCCChHHHHHHhccCCC--CChhhHH
Q 047840 84 TARALFDKSPDR---------------DVVT--------------WTTMVDGYGKMGDFENARELFEKMPE--RNAVSWS 132 (445)
Q Consensus 84 ~a~~~~~~~~~~---------------~~~~--------------~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 132 (445)
+|..+-.+..+. |..- --+|.+.....-.+++|++++.++.. |+-...|
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 998887665431 1111 11233333334467888888888765 3333444
Q ss_pred H-HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHH--------------HHHHHHHcCC---
Q 047840 133 A-IMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW--------------VHSYAKRYHL--- 194 (445)
Q Consensus 133 ~-l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~--------------~~~~~~~~~~--- 194 (445)
. +.-+|.+..-++-+.+++.-.... .+-++...+..+....+.=+-..|++ ..+.+.+.+.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEE
Confidence 3 344567777778777777776654 22233333333322222111111111 1122222210
Q ss_pred ---------CC-----chhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC-------hHHHHHHHH
Q 047840 195 ---------EK-----NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD-------AKKSLELFD 253 (445)
Q Consensus 195 ---------~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~ 253 (445)
-| -+..-..|+-.|.+.+++.+|..+.+++...++.-|-.-.-.++..|+ ..-|...|+
T Consensus 268 rngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffq 347 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQ 347 (557)
T ss_pred eCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHH
Confidence 00 112223455567788888888888888877665544443333444443 334444444
Q ss_pred HHHHcCCCCCH-HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 047840 254 RMVKSGTQPTE-TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 254 ~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 332 (445)
-.-..+..-|. ..-.++.+++.-..++++.+..++.+..- -...|...+ .+..+++..|++.+|+++|-.+....++
T Consensus 348 lVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 348 LVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred HhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh
Confidence 44333333222 22334555556667788888888888743 223333333 5788899999999999999888655544
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
.+..-...|.++|.+.++.+.|..++-++ ..|. .......++.-|.+.+.+--|.+.|+.+....-.|
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 44444455667888999998886554333 2232 33344567778999999999999999887654444
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3e-12 Score=78.65 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=43.6
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888889999999999998888888888888888888864
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=5.8e-09 Score=93.05 Aligned_cols=279 Identities=10% Similarity=0.020 Sum_probs=215.4
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (445)
++........-+...+++.+..++++.+.+ .....+-.-|.++...|+..+-..+=.++.+. .+-.+.+|-++.--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHH
Confidence 444455556667788899999999888876 35556667778889999999888888888875 34467889999999
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
|...|+..+|.++|.+....+ +.=...|-.....|+-.|.-|.|+..+....+ ..-..+--+.--|.+.++...|.
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 999999999999999887664 23356788888999999999999988865443 12222233344577889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh-CCCC----ChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY-GVEP----QLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+.|.+.... .+.|+..++-+.-.....+.+.+|..+|+.....- .+.+ -..+++.|..+|.+.+.+++|+..++
T Consensus 401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 999988765 23466677777666677889999999998876310 1111 34567888999999999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
..+... +.|..++.++.-.|...|+++.|.+.|.+++.+.|++..+-..|..+
T Consensus 480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 988877 78999999999999999999999999999999999986555555443
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.4e-08 Score=93.95 Aligned_cols=373 Identities=12% Similarity=0.023 Sum_probs=244.7
Q ss_pred HHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC----
Q 047840 20 DMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR---- 95 (445)
Q Consensus 20 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 95 (445)
++....+.-|+..|..+.-+....|+++ .+.+.|++..... .-....|+.+...|...|.-..|..+++....+
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~-~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFE-VLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 3333345567788888888888889998 7888888776643 335567888888888889988888888765442
Q ss_pred -ChhhHHHHHHHHH-cCCChHHHHHHhccCCC--------CChhhHHHHHHHHHhc-----------CCHhHHHHHHHHH
Q 047840 96 -DVVTWTTMVDGYG-KMGDFENARELFEKMPE--------RNAVSWSAIMAAYSRI-----------SDFKEVLSLFRQM 154 (445)
Q Consensus 96 -~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~ 154 (445)
+...+-..-..|. +.+..++++++-.+... -....|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 2222333333333 34666666655444432 1344454444444321 1245667777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-------
Q 047840 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK------- 227 (445)
Q Consensus 155 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 227 (445)
.+.+. -|+....-+.--|+-.++++.|.+..++..+.+-..+...|.-|.-++...+++.+|+.+.+.....
T Consensus 471 v~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l 549 (799)
T KOG4162|consen 471 VQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL 549 (799)
T ss_pred HhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 66431 1333333333445667788888888888888765667777777777777888888887776544321
Q ss_pred ------------C----hhhHHHHHHHHH-----------------------hcCChHHHHHHHHHHH--------HcC-
Q 047840 228 ------------D----AGAWNAMISGVA-----------------------MNGDAKKSLELFDRMV--------KSG- 259 (445)
Q Consensus 228 ------------~----~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~m~--------~~~- 259 (445)
| ..+...++...- ..++..++.+..+++. ..|
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 0 111222221111 0011222222222111 111
Q ss_pred --------C--CCCH------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 047840 260 --------T--QPTE------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFI 323 (445)
Q Consensus 260 --------~--~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 323 (445)
+ .|+. ..|......+.+.+..++|...+.+... -.+.....|......+...|.+++|.+.|
T Consensus 630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 0 1221 1233445567788888999988888875 33445667777777888899999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH--HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 324 EEKMGGLGGGDANVWGALLSACRIYGKIEVGNR--VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
......+ |.++.+..++...+...|+..-|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|......
T Consensus 708 ~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 708 LVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9988766 5667889999999999998888877 999999999999999999999999999999999999988754
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=9e-12 Score=76.50 Aligned_cols=50 Identities=28% Similarity=0.500 Sum_probs=36.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 047840 227 KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276 (445)
Q Consensus 227 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 276 (445)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 46667777777777777777777777777777777777777777777654
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=1.3e-08 Score=94.21 Aligned_cols=285 Identities=13% Similarity=0.064 Sum_probs=176.2
Q ss_pred HHHHcCCChHHHHHHhccCCC--CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-c-----
Q 047840 105 DGYGKMGDFENARELFEKMPE--RN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA-H----- 175 (445)
Q Consensus 105 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~----- 175 (445)
..+...|++++|++.++.-.. .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445667777777777766543 23 3334556677777788888888888877754 44444443333332 1
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChH-HHHHHhhcCCCCC-hhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH-SALSVFEGISNKD-AGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
..+.+....+|+++...- |.......+.-.+.....+. .+..++..+.... +.+|+.+-..|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 124555666777665542 22222222222222222222 2233333333333 3455555555554444444555555
Q ss_pred HHHHc----C----------CCCCH--HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCCh
Q 047840 254 RMVKS----G----------TQPTE--TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMV 316 (445)
Q Consensus 254 ~m~~~----~----------~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 316 (445)
..... + -.|+. .++..+...|...|++++|..+++..+.. .|+ +..|..-...+-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCCH
Confidence 54322 1 12333 24455667788899999999999988864 455 67777888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-Cch----hH--HHHHHHHHHcCChHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG--IT-DFS----TH--VLSYNIYKEAGWDME 387 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~----~~--~~l~~~~~~~g~~~~ 387 (445)
.+|.+.++...... .-|...=+-.+..+.+.|++++|.+.+....+.+ |. +.. .| ...+.+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999988777 5677777777888889999999999888887654 22 111 22 356778999999999
Q ss_pred HHHHHHHHHh
Q 047840 388 ANKVRKLISE 397 (445)
Q Consensus 388 A~~~~~~m~~ 397 (445)
|++-|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9887766654
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=4.4e-08 Score=88.99 Aligned_cols=382 Identities=12% Similarity=0.111 Sum_probs=220.5
Q ss_pred hhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 047840 6 MQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 85 (445)
-..+++...+.+.+.+.. +.+-...|.....-.+...|+.+ .|........+.. .-+.+.|+.+.-.+....++++|
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~-ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKE-EAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchH-HHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHH
Confidence 345677777777777776 33334445444444455667666 6666655544422 23455677777777777788888
Q ss_pred HHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-
Q 047840 86 RALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG- 158 (445)
Q Consensus 86 ~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 158 (445)
+..|..... .|...|.-+.-.-++.|+++.....-....+ .....|..++.++.-.|++..|..+++...+..
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 888876543 3455555554444555565555555444433 234456666666666777777777776665432
Q ss_pred CCCCHHHHHHHHH------HHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC--Chh
Q 047840 159 MKPNESGLVSVLT------ACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAG 230 (445)
Q Consensus 159 ~~p~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~ 230 (445)
-.|+...+..... .....|.++.|.+.+..-...- ......-..-...+.+.+++++|..++..+..+ |..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 2344444433222 2334555555555544433221 111112222334455566666666666655442 222
Q ss_pred hHHHHH-HHHHhcC-----------------------------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 231 AWNAMI-SGVAMNG-----------------------------------DAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 231 ~~~~l~-~~~~~~~-----------------------------------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
.|.... .++.+-. -.+..-+++..+.+.|+++--..+ ...|
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl---~SLy 330 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL---RSLY 330 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh---HHHH
Confidence 222221 1121111 122233344445555554332222 2222
Q ss_pred hcCCcHHHHHHHHHHhHHhh-----CC------------CCChhHHH--HHHHHHHhcCChHHHHHHHHHHhcCCCCCC-
Q 047840 275 THAKMVRDGLNLFENMSAVY-----GV------------EPQLEHYA--CVVDLLARAGMVEEAEKFIEEKMGGLGGGD- 334 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~-----~~------------~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 334 (445)
-.....+ +++++...+ |- +|+...|+ .++..+-+.|+++.|..+++..+++. |+
T Consensus 331 k~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTl 404 (700)
T KOG1156|consen 331 KDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTL 404 (700)
T ss_pred hchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chH
Confidence 2211111 222222110 11 45655554 45677889999999999999998664 44
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+..|..-.+.+...|++++|..+++++.+++-.|..+-.--+.-..++++.++|.++.....+.|.
T Consensus 405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 405 IELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 456777788899999999999999999999988876666788888999999999999999988876
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.28 E-value=1.2e-07 Score=86.20 Aligned_cols=254 Identities=12% Similarity=0.127 Sum_probs=145.7
Q ss_pred cCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc---hhhhhHHHHHHHcc
Q 047840 141 ISDFKEVLSLFRQMQEVGMKPN------ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILATAVVDMYSKC 211 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 211 (445)
.|+..+-...|.+.... +.|- ...|..+.+.|-..|+++.|..+|++..+...+.- ..+|.....+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566667777776653 3331 24567788888899999999999999987664432 45677777777888
Q ss_pred CChHHHHHHhhcCCC-C--------------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-------
Q 047840 212 GHVHSALSVFEGISN-K--------------------DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-P------- 262 (445)
Q Consensus 212 g~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p------- 262 (445)
.+++.|.++.+.... | +...|+..+...-..|-++....+|+++.+..+. |
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 889999988876532 1 2335666666666667777777777777654332 1
Q ss_pred --------------------------CHH-HHHHHHHHhh---cCCcHHHHHHHHHHhHHhhCCCCChhHHHHH--HHHH
Q 047840 263 --------------------------TET-TFVAVLTTCT---HAKMVRDGLNLFENMSAVYGVEPQLEHYACV--VDLL 310 (445)
Q Consensus 263 --------------------------~~~-~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~ 310 (445)
+.. .|+..+.-+. ....++.|..+|++..+ +++|...-+--| ...=
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHH
Confidence 111 1111111111 11245566666666654 444432111111 1111
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHcCChH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF--STHVLSYNIYKEAGWDM 386 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 386 (445)
-+.|-...|+.++++.... +++. ...||..|.--...=.+.....+|+++++.-|++. ....-.++.-.+.|..+
T Consensus 597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH
Confidence 1345555566666654332 1222 23455555444444344555667777777655521 22334566777889999
Q ss_pred HHHHHHHHHHhc
Q 047840 387 EANKVRKLISET 398 (445)
Q Consensus 387 ~A~~~~~~m~~~ 398 (445)
.|..++..-.+.
T Consensus 676 RARaIya~~sq~ 687 (835)
T KOG2047|consen 676 RARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHhhhhc
Confidence 999998776544
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.27 E-value=7.8e-09 Score=95.71 Aligned_cols=262 Identities=11% Similarity=0.088 Sum_probs=188.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc---
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC--- 211 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 211 (445)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |.|..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 35568899999999999875543 44345566778888999999999999999999997 45555566666665222
Q ss_pred --CChHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 212 --GHVHSALSVFEGISNK--DAGAWNAMISGVAMNGDA-KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 212 --g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
.+.+...++|+++... ...+...+.-.+.....+ ..+..++..+..+|+++ +|+.+-..|....+..-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 2567777788776542 222222222222222223 34556667778888764 444455556655555555666
Q ss_pred HHHhHHhh-------------CCCCChhHH--HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 287 FENMSAVY-------------GVEPQLEHY--ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 287 ~~~~~~~~-------------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
+....... .-+|+...| ..+...|-..|++++|++++++.++.. |-.+..|..-.+.+-..|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence 66554321 112444334 455777889999999999999999876 44578899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
.+|.+.++.+..+++.|-.+..-.+..+.++|+.++|.+++....+.+..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 999999999999999998888889999999999999999999998877644
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.4e-07 Score=83.42 Aligned_cols=384 Identities=9% Similarity=0.029 Sum_probs=235.2
Q ss_pred hhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhcC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGF-GEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 80 (445)
|+-+.++|++++|+....++...+ +-+...+..=+-++.+.+.++ .|..+.+ ..+. ..+...+---+.+.-+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~-~ALk~ik---k~~~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYE-DALKLIK---KNGALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHH-HHHHHHH---hcchhhhcchhhHHHHHHHHHcc
Confidence 345678899999999999999855 335556777777788888888 7774432 2221 111111111233344789
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC-------------------------------Chh
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-------------------------------NAV 129 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------~~~ 129 (445)
..++|...++.....+..+...-...+.+.|++++|.++|+.+.+. ...
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 9999999999555556667777788899999999999999888310 111
Q ss_pred hHHH---HHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 047840 130 SWSA---IMAAYSRISDFKEVLSLFRQMQEV-------GMKPNE-------SGLVSVLTACAHLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 130 ~~~~---l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (445)
+|.. ....+...|++.+|+++++..... +-.-+. ..-..+.-++...|+.++|..+|...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 3333 344567889999999999887321 111011 11223455677899999999999999887
Q ss_pred CCCCchhh----hhHHHHHHHccC---------------------------------------------ChHHHHHHhhc
Q 047840 193 HLEKNVIL----ATAVVDMYSKCG---------------------------------------------HVHSALSVFEG 223 (445)
Q Consensus 193 ~~~~~~~~----~~~l~~~~~~~g---------------------------------------------~~~~a~~~~~~ 223 (445)
. ++|... .|.|+..-.... .-+.+.++-..
T Consensus 254 ~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 254 N-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSAS 332 (652)
T ss_pred c-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 6 344322 222222111110 00111111111
Q ss_pred CCCCC-hhhHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH--------HhHH
Q 047840 224 ISNKD-AGAWNAMISGV--AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE--------NMSA 292 (445)
Q Consensus 224 ~~~~~-~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~ 292 (445)
.+... ...+.+++... ++.....++.+++....+....-........+......|+++.|..++. .+.+
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 11111 12233333322 2222466677777766554222223444555666788999999999998 4443
Q ss_pred hhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 293 VYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG--LGGGDA----NVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
. +.. +.+...+...+.+.++.+.|..++.+.+.. .-.+.. .++.-+...-.+.|+.++|..+++++.+..|
T Consensus 413 ~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 413 A-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred h-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 2 333 445566777788888777777777665321 001222 2333344444677999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
++..+...++.+|++. +.+.|..+-+.+
T Consensus 490 ~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 490 NDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred chHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999888876 456676665543
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=5.1e-09 Score=91.66 Aligned_cols=218 Identities=8% Similarity=0.006 Sum_probs=145.0
Q ss_pred CCHhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHH
Q 047840 142 SDFKEVLSLFRQMQEVG-MKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
++.+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777776666432 2222 3456667777778888888888888887765 456777888888888888888888
Q ss_pred HHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 219 SVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 219 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...+..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88877644 2 4567777888888899999999999988875 34332222222223456789999999977654 2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhc---CCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG---GLG---GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..|+...+ .+ .....|+..++ +.+..+.+ ..+ +.....|..+...+...|++++|+..|+++++..|++
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 23332222 22 23345665444 24444332 111 1234578899999999999999999999999998754
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=1e-09 Score=102.58 Aligned_cols=269 Identities=15% Similarity=0.122 Sum_probs=188.7
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC----ChhhHHHHHHHHHcCCChHHHHHHhccCCCCC
Q 047840 52 FVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR----DVVTWTTMVDGYGKMGDFENARELFEKMPERN 127 (445)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 127 (445)
.++..+...|+.|+..||.+++.-|+..|+++.|- +|.-|.-. +...++.++.+..+.++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667788899999999999999999999999998 88766543 5667889999888888876664 788
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-cCCCCchhhhhHHHH
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR-YHLEKNVILATAVVD 206 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 206 (445)
+.+|..|..+|...||... ++..++ -...+...+...|.-.....++..+.- .+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 9999999999999999776 222222 111222333334433333333333211 1122332 23445
Q ss_pred HHHccCChHHHHHHhhcCCCCCh-hhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKDA-GAWNAMISGVAMNG-DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
...-.|.++.+.+++..++...- ..+-.+++-..... .+++-..+.+.... .|++.+|..++.+-...|+.+.|.
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHH
Confidence 55667888888888887765311 01111344333322 23333333333332 589999999999999999999999
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 047840 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (445)
.++.+|.+. |++.+.+.|-.|+-+ .++..-+..+++.|.+.|+.|+..|+...+..+.++|.
T Consensus 225 ~ll~emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 225 NLLYEMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHc-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999999988 999998888777744 78888899999999999999999998887777766443
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=7e-09 Score=90.92 Aligned_cols=293 Identities=14% Similarity=0.086 Sum_probs=207.5
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCC--CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPE--RN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN-ESGLVSVLTACAH 175 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 175 (445)
+-...+-|.+.|.+++|++++....+ |+ +.-|.....+|...|+|+++.+--.+.++ +.|+ ...+.--.+++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 33455678899999999999999875 67 77889999999999999999998888877 4565 3456666778888
Q ss_pred cCChhHHHHHHHHHHH-------------------------------cC--CCCchhhhhHHHHHHHc---------cC-
Q 047840 176 LGAITQGLWVHSYAKR-------------------------------YH--LEKNVILATAVVDMYSK---------CG- 212 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~-------------------------------~~--~~~~~~~~~~l~~~~~~---------~g- 212 (445)
.|++++|+.-.....- .+ +-|+.....+....+-. ..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 9999988743222100 01 11222222211111100 00
Q ss_pred ---ChHHHHHHhhcCCC--------------------C-----Chh------hHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 213 ---HVHSALSVFEGISN--------------------K-----DAG------AWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 213 ---~~~~a~~~~~~~~~--------------------~-----~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
...++.+.+..-.+ . |.. +...-..-+.-.|+.-.|..-|+..+..
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 01122222211110 0 111 1111112234568888999999998886
Q ss_pred CCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 259 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
...++. .|.-+...|....+.++.++.|....+.. +-++.+|-.-...+.-.+++++|..=|++.++.. +.++..|
T Consensus 356 ~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~ 431 (606)
T KOG0547|consen 356 DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAY 431 (606)
T ss_pred Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHH
Confidence 544333 27777778999999999999999998531 3356677777777777899999999999998777 6678889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
-.+..+..+.+++++++..|++.++..|.-+..|+..+.++..+++++.|.+.|+...+.
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 889888889999999999999999999999999999999999999999999999988754
No 75
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.24 E-value=1e-09 Score=94.66 Aligned_cols=248 Identities=13% Similarity=0.111 Sum_probs=158.7
Q ss_pred cCCChHHHHHHhccCCC--C--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHH
Q 047840 109 KMGDFENARELFEKMPE--R--NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (445)
-.|++..++.-.+ ... + +......+.+++...|+++.++. +.... -.|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHHHHH
Confidence 3455655554333 111 1 22234455667777777665443 23222 25555555555554444334444444
Q ss_pred HHHHHHHcCCC-CchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 185 VHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 185 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
-+++....... .+..+.......+...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 33333322222 23333344445677789999999888776 56677777889999999999999999999875 333
Q ss_pred HHHHHHHHHHhh----cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 264 ETTFVAVLTTCT----HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 264 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
.+...+..++. ....+.+|..+|+++.. ...+++.+.+.+..+....|++++|.+++.+....+ +.++.+..
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~La 239 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLA 239 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHH
Confidence 44444555433 23468999999999876 556788888889999999999999999999988776 66778888
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHHhCCCCc
Q 047840 340 ALLSACRIYGKI-EVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 340 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 369 (445)
.++.+....|+. +.+.+.+.++....|.++
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 888888888887 778889999998888866
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=4.1e-09 Score=92.27 Aligned_cols=215 Identities=15% Similarity=0.030 Sum_probs=155.7
Q ss_pred CChhHHHHHHHHHHHcC-CCC--chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHH
Q 047840 177 GAITQGLWVHSYAKRYH-LEK--NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLE 250 (445)
Q Consensus 177 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 250 (445)
+..+.++.-+.+++... ..| ....|..+...|...|+++.|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566677777777532 122 245677788889999999999999987754 367799999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
.|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...+++++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999885322 4667788888888999999999999999865 4543322222223446788999999997765332
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------HhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLA-------EMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
.|+...+ .......|+...+ +.++.+. +..|..+.+|..++..+.+.|++++|...|++..+.+.
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3333222 2233345666544 3444444 44555667899999999999999999999999886654
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.2e-07 Score=80.12 Aligned_cols=252 Identities=12% Similarity=-0.013 Sum_probs=147.2
Q ss_pred hcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC-----
Q 047840 140 RISDFKEVLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH----- 213 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 213 (445)
..++...|..++-.+.... ++-|......+.+.+...|+.++|...|++....+ +-+........-.+.+.|+
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 3444445555544443322 44456666777777777777777777777766543 1111111111112233333
Q ss_pred -----------------------------hHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 214 -----------------------------VHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 214 -----------------------------~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
++.|..+-++..+. +...+-.-...+...+++++|.-.|+..+.. -+
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap 365 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-AP 365 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-ch
Confidence 33343333333222 2333333334566667777777777766553 12
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH-HHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV-DLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
-+...|..|+.+|...|+..+|...-+...+ -++.+..+.+.+. ..+.. ...-++|.++++..+... |.-....+
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 3556777777777777777777766666554 3344455544442 22222 222366777777665443 22345667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+...|...|..+.++.++++.+...|+ ......|++.+...+.+.+|.+.|.....
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 7777888888888889888888887776 44788888888888888888888776543
No 78
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.3e-08 Score=87.94 Aligned_cols=366 Identities=9% Similarity=0.033 Sum_probs=194.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDP-FVVSSLLEFYSLVHKM 82 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 82 (445)
+.+..|+++.|+.+|-+.+... ++|..-|+.=..+++..|+++ .|.+=-...++ +.|+. ..|.....++.-.|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~-~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYE-KALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHH-HHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 4567899999999999988754 347777888889999999999 66654444444 55663 5688889999999999
Q ss_pred HHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhcc------CC-CC------ChhhHHHHHHHHHhc-----
Q 047840 83 GTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEK------MP-ER------NAVSWSAIMAAYSRI----- 141 (445)
Q Consensus 83 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~-~~------~~~~~~~l~~~~~~~----- 141 (445)
++|..-|.+.++. +...++.+..++... . .+.+.|.. +. .| ....|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999988763 444555565555111 0 00111110 00 00 111122222111110
Q ss_pred -----CCHhHHHHHHHH-----HHHc-------CCCC----------------------CHHHHHHHHHHHHccCChhHH
Q 047840 142 -----SDFKEVLSLFRQ-----MQEV-------GMKP----------------------NESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 142 -----~~~~~a~~~~~~-----~~~~-------~~~p----------------------~~~~~~~l~~~~~~~~~~~~a 182 (445)
.+...+.-.+.. +... +..| -..-...+.++..+..++..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 001111110000 0000 0000 113445566666666666666
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChh----------hHHHHHHHHHhcCChHHHHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG----------AWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.+-+....... .+..-++....+|...|.+..+...-....+.... .+..+..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 66666666554 34444555555666666665555554443322111 1111223445556666666666
Q ss_pred HHHHHcCCCCCHHH-------------------------HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 253 DRMVKSGTQPTETT-------------------------FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 253 ~~m~~~~~~p~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
.+.......|+..+ ...-...+.+.|++..|...|.++++. .+.|...|..-.
T Consensus 322 ~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRA 399 (539)
T KOG0548|consen 322 QKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRA 399 (539)
T ss_pred HHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHH
Confidence 66544333332211 011123344556666666666666543 233455566666
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
-+|.+.|.+..|+.=.+..++.+ ++....|..-..++....++++|.+.|++.++.+|.+......+.+++..
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 66666666666666555555544 44455555555555555666666666666666666555544444444443
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1.4e-09 Score=97.23 Aligned_cols=220 Identities=11% Similarity=0.030 Sum_probs=176.7
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+ .+..+...|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467888999999999988876 66788899898888888888888888877655 35667778888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 047840 250 ELFDRMVKSGTQ--------PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 250 ~~~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 321 (445)
+.++.-....++ ++...-.. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999887654311 00000000 12333344566677777777665656788888889888999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.|+.++... |.|...||.|...++...+.++|+..|.+++++.|.-.++...|+..|...|.+++|.+.|-...
T Consensus 452 cf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999877 67889999999999999999999999999999999999999999999999999999999666554
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=5.6e-08 Score=88.31 Aligned_cols=388 Identities=15% Similarity=0.146 Sum_probs=252.8
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHc
Q 047840 33 FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGK 109 (445)
Q Consensus 33 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~ 109 (445)
|..+++ |...+++. ......+.+.+ +.+.-..+.....-.+...|+-++|.......... +.+.|+.+.-.+-.
T Consensus 11 F~~~lk-~yE~kQYk-kgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALK-CYETKQYK-KGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHH-HHHHHHHH-hHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 344444 34556777 67777777666 34444455544444566789999999988876653 56789999988889
Q ss_pred CCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 047840 110 MGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVH 186 (445)
Q Consensus 110 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 186 (445)
..++++|++.|+.... .|...|.-+.-.-++.|+++.......++.+.. +.....|..+..+..-.|+...|..+.
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998764 366677777777788899999998888887742 224556778888888899999999999
Q ss_pred HHHHHcCC-CCchhhhhHHH------HHHHccCChHHHHHHhhcCCCC--Chhh-HHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 187 SYAKRYHL-EKNVILATAVV------DMYSKCGHVHSALSVFEGISNK--DAGA-WNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 187 ~~~~~~~~-~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
++..+... .|+...+.... ....+.|.++.|.+.+....+. |-.. -.+-...+.+.+++++|..++..+.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 99987652 45555443322 3456778889998888776653 3333 3345667889999999999999999
Q ss_pred HcCCCCCHHHHHHHHH-HhhcCCcHHHHH-HHHHHhHHhh---------------------------------CCCCChh
Q 047840 257 KSGTQPTETTFVAVLT-TCTHAKMVRDGL-NLFENMSAVY---------------------------------GVEPQLE 301 (445)
Q Consensus 257 ~~~~~p~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~---------------------------------~~~~~~~ 301 (445)
.. .||..-|...+. ++.+..+.-++. .+|....+.+ |+++
T Consensus 247 ~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~--- 321 (700)
T KOG1156|consen 247 ER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS--- 321 (700)
T ss_pred hh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---
Confidence 86 466665554443 333222222222 4444443321 2222
Q ss_pred HHHHHHHHHHhcCChHHHHH----HHHHHhcCC----------CCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 302 HYACVVDLLARAGMVEEAEK----FIEEKMGGL----------GGGDANVWG--ALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~----------~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
++..+...|-.....+-..+ +...+...| -+|....|. .++..+-..|+++.|...++.+++.-
T Consensus 322 vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 322 VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22222222221111111111 111111111 145555444 56677889999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHH
Q 047840 366 ITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVI 435 (445)
Q Consensus 366 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (445)
|.-+..|..-++++...|..++|..++++..+..... ..+++.+--|.......+++.++...+
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD------R~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD------RAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh------HHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 9888888888999999999999999999988766532 223434434444444444444444443
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.18 E-value=8.7e-09 Score=94.28 Aligned_cols=234 Identities=12% Similarity=0.119 Sum_probs=175.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHc-----C-CCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHc-----C--CC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEV-----G-MKPNES-GLVSVLTACAHLGAITQGLWVHSYAKRY-----H--LE 195 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 195 (445)
+...+...|...|+++.|..+++...+. | ..|... ..+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4555889999999999999999987653 2 133333 3344777889999999999999998753 2 11
Q ss_pred CchhhhhHHHHHHHccCChHHHHHHhhcCCC----------CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC
Q 047840 196 KNVILATAVVDMYSKCGHVHSALSVFEGISN----------KDA-GAWNAMISGVAMNGDAKKSLELFDRMVKS---GTQ 261 (445)
Q Consensus 196 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~ 261 (445)
--..+++.|...|.+.|++++|..+++...+ +.+ ..++.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245677788899999999988887765432 122 24666778889999999999999876542 122
Q ss_pred CC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh----C-CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhc---
Q 047840 262 PT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVY----G-VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMG--- 328 (445)
Q Consensus 262 p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 328 (445)
++ ..+++.+...|...|++++|.++++.+.... + ..+. ...++.|...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3578999999999999999999999887642 1 1222 45667888899999999999998887532
Q ss_pred -CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 329 -GLG-GGD-ANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 329 -~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.|. .|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 221 233 46899999999999999999999998875
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=1.3e-08 Score=80.72 Aligned_cols=197 Identities=12% Similarity=0.059 Sum_probs=84.8
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcC
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNG 243 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 243 (445)
..+.-.|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++... .+..+.|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 334444455555555555555555443 33334444444444444444444444443322 23334444444444444
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 322 (445)
++++|...|++....-.-| -..||..+.-+..+.|+.+.|...|++..+. .+........+.......|++..|..+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHH
Confidence 4444444444444331111 1233444444444444444444444444432 111123333444444444444444444
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 323 IEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
++.....+ .++..+....|+.-...|+.+.+.+.=.++.+..|.
T Consensus 196 ~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 196 LERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 44444333 244444444444444444444444444444444443
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=8.2e-08 Score=80.65 Aligned_cols=300 Identities=14% Similarity=0.077 Sum_probs=220.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHH---HHHHcCCChHHHHHHhccCCCCChhhHHH---HHHHHH
Q 047840 66 PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMV---DGYGKMGDFENARELFEKMPERNAVSWSA---IMAAYS 139 (445)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~ 139 (445)
+.-.--+.+.+...|++..|+.-|...++-|+..|.++- .+|...|+...|+.-|.+..+.-+.-+.+ -...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334445667777889999999999988888887777664 56778888888888777776533333332 234678
Q ss_pred hcCCHhHHHHHHHHHHHcCCCCC--HH------------HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 140 RISDFKEVLSLFRQMQEVGMKPN--ES------------GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~p~--~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
+.|.+++|..=|+..+.....-+ .. .....+..+...|+...|+.....+++.. +.+...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 89999999999998887542111 11 12233455667889999999999998875 77888999999
Q ss_pred HHHHccCChHHHHHHhhcC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH--------
Q 047840 206 DMYSKCGHVHSALSVFEGI---SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT----FVAV-------- 270 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l-------- 270 (445)
.+|...|++..|+.-++.. ...+..++..+-..+...|+.+.++...++..+. .||... |..+
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999998776644 4457777888888889999999999999888774 566532 2111
Q ss_pred -HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 271 -LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 271 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
+......++|.++..-.+...+. .|. ...+..+-.++...|++.+|++...+.++.. +.|+.++.--..+
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHH
Confidence 11234567788888877777753 444 2234456677778899999999999988655 4558889888999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
|.-...++.|+.-|+.+.+.++.+..+-
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 9999999999999999999888765443
No 84
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.17 E-value=4.1e-07 Score=82.77 Aligned_cols=169 Identities=11% Similarity=0.078 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC---------
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT---ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP--------- 298 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 298 (445)
.|..+...|-..|+.+.|..+|++..+-..+-- ..+|..-...=.+..+++.|+.+.+..... .-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCC
Confidence 455666666666666666666666655322110 123333333333445566666666555432 1010
Q ss_pred --------ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--C
Q 047840 299 --------QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--D 368 (445)
Q Consensus 299 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~ 368 (445)
+...|...++.--..|-++....+|+++++..+ .++.+.......+-.+.-++++.+++++-+.+.+. -
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 123344445555556666666666666666553 23333333333444455566666666666664432 2
Q ss_pred chhHHHHHHHHHH---cCChHHHHHHHHHHHhcCCcc
Q 047840 369 FSTHVLSYNIYKE---AGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 369 ~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~ 402 (445)
..+|+..+..+.+ ..+.+.|..+|++..+ |.+|
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 2233333332222 2356667777777666 4443
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=1.1e-07 Score=79.91 Aligned_cols=293 Identities=12% Similarity=0.073 Sum_probs=220.9
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHH---HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHc
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIM---AAYSRISDFKEVLSLFRQMQEVGMKPNESGL-VSVLTACAH 175 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~ 175 (445)
.-.+...+...|++..|+.-|....+-|+..|.++. ..|...|+..-|+.=+.+.++ ++||...- ..-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 345677788899999999999999998888887765 478889999999999998887 57775332 233456789
Q ss_pred cCChhHHHHHHHHHHHcCCCCc--hh------------hhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKN--VI------------LATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISG 238 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~--~~------------~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 238 (445)
.|.+++|..-|+..++.....+ .. .....+..+.-.|+...|+.....+.+ -|...+..-..+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKC 198 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 9999999999999998752111 11 122334455677899999998887765 377788888899
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhH----HHHH--------
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH----YACV-------- 306 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l-------- 306 (445)
|...|.+..|+.-++...+..- -+..++--+-..+...|+.+.++...++.. .+.|+... |..|
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999988887766532 355555566667788899999888888887 44676432 2211
Q ss_pred -HHHHHhcCChHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 307 -VDLLARAGMVEEAEKFIEEKMGGLGGGDAN---VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 307 -~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+....+.++|.++++..+..++........ .+..+-.++...|++.+|++...++++.+|++..++-.-+.+|.-.
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 122345678888888888877665221222 3445556677889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 047840 383 GWDMEANKVRKLISET 398 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~ 398 (445)
..+++|+.-|+...+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887664
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=6.5e-08 Score=81.61 Aligned_cols=407 Identities=10% Similarity=0.057 Sum_probs=245.9
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHH--------------HhcC-------
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVV--------------KFGF------- 62 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~--------------~~~~------- 62 (445)
.+.+.|++++|+..|..+.+.. .|+...+..+..+..-.|.+. +|..+-.... +.|-
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~-eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI-EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH-HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 4667899999999999887754 455565655666656666666 5665543221 1110
Q ss_pred ----CCChhhHHHHHHHHHhcCCHHHHHHHhccCCCC--ChhhHHH-HHHHHHcCCChHHHHHHhccCCC--C-ChhhHH
Q 047840 63 ----GEDPFVVSSLLEFYSLVHKMGTARALFDKSPDR--DVVTWTT-MVDGYGKMGDFENARELFEKMPE--R-NAVSWS 132 (445)
Q Consensus 63 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 132 (445)
..+...--+|....-..-.+.+|++++.++... +....|. +.-+|.+..-++-+.++++.... | ++.+-|
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~N 223 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKN 223 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHH
Confidence 111111223333333334677888888877653 3333443 33456677777766666554432 2 233333
Q ss_pred HHHHHHHhc--C---------------------------------CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047840 133 AIMAAYSRI--S---------------------------------DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177 (445)
Q Consensus 133 ~l~~~~~~~--~---------------------------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (445)
..+....+. | +-+.|++++-.+.+ +-| ..-..++-.|.+.+
T Consensus 224 Lkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IP--EARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 224 LKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIP--EARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hCh--Hhhhhheeeecccc
Confidence 333322221 1 12333333333222 112 23334556678899
Q ss_pred ChhHHHHHHHHHHHcCCCCchhhh-------hHHHHHHHccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCCh
Q 047840 178 AITQGLWVHSYAKRYHLEKNVILA-------TAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNGDA 245 (445)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 245 (445)
++.+|..+.+++. |.++.-| .++.+-.....+..-|.+.|.-+-.. ++.--.++.+.+.-..++
T Consensus 300 dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 300 DVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 9999998887663 2222222 22222222233456677777654432 344567788888888899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-HHHHHHHhcCChHHHHHHHH
Q 047840 246 KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 246 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~ 324 (445)
++.+-+++....-=...|.+.| .+..+++..|++.+|+++|-.+... .+ .|..+|. .|.++|.+++.++-|.+++-
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999988776444444444 4678888999999999999888732 22 4556665 56789999999999998887
Q ss_pred HHhcCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccC
Q 047840 325 EKMGGLGGGDANVWGA-LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKK 403 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 403 (445)
.+ +-+.+..+... +..-|.+.+.+--|-+.|..+...+|... -| .|+......+|..+.....+|.
T Consensus 453 k~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE-nW---------eGKRGACaG~f~~l~~~~~~~~ 519 (557)
T KOG3785|consen 453 KT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE-NW---------EGKRGACAGLFRQLANHKTDPI 519 (557)
T ss_pred hc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc-cc---------CCccchHHHHHHHHHcCCCCCC
Confidence 76 43344444444 44678899999999999999998888632 22 3555566678888887777777
Q ss_pred CcccEEEECCeEeEEecCCCCcchhhHHHHHHHHHHhc
Q 047840 404 PGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441 (445)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (445)
|+... ..+++.+. ++.+.+.+-+.+++.++-+.
T Consensus 520 p~~~~---rEVvhllr--~~~nsq~E~mikvvrkwa~~ 552 (557)
T KOG3785|consen 520 PISQM---REVVHLLR--MKPNSQCEFMIKVVRKWAET 552 (557)
T ss_pred chhHH---HHHHHHHH--hCCCchHHHHHHHHHHHHHh
Confidence 76443 33333332 34555666666666666554
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.6e-07 Score=84.51 Aligned_cols=390 Identities=12% Similarity=0.115 Sum_probs=221.7
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHH--HcCCC
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGY--GKMGD 112 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~g~ 112 (445)
+=++.+...++++ .+.+....+...+ +.+...+.+-+.+..+.+.+++|..+.+.-........-.+=.+| .+.+.
T Consensus 17 t~ln~~~~~~e~e-~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYE-EAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHH-HHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 3455667788898 8888888888865 556677778888889999999999776654321111111123444 57899
Q ss_pred hHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
.++|+..++-....+..+...-...+.+.|++++|+.+|+.+.+++.+- +...-..++.+-.. -.+ +.+..
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~----~~~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQV----QLLQS 166 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhH----HHHHh
Confidence 9999999996655565566677788999999999999999998765331 11111222211110 001 11222
Q ss_pred cCCCCc--hhhhhHHHHHHHccCChHHHHHHhhcC--------CCCCh-----h-----hHHHHHHHHHhcCChHHHHHH
Q 047840 192 YHLEKN--VILATAVVDMYSKCGHVHSALSVFEGI--------SNKDA-----G-----AWNAMISGVAMNGDAKKSLEL 251 (445)
Q Consensus 192 ~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~-----~-----~~~~l~~~~~~~~~~~~a~~~ 251 (445)
....|+ -..+......+...|++..|+++++.. ...|. . .--.+.-.+...|+..+|..+
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 222221 122223445667889999999998776 11111 1 122344456778999999999
Q ss_pred HHHHHHcCCCCCHHHH----HHHHHHhhcC---------------------------------------------CcHHH
Q 047840 252 FDRMVKSGTQPTETTF----VAVLTTCTHA---------------------------------------------KMVRD 282 (445)
Q Consensus 252 ~~~m~~~~~~p~~~~~----~~l~~~~~~~---------------------------------------------~~~~~ 282 (445)
+...++.+. +|.... |.++..-... +..+.
T Consensus 247 y~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 247 YVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 988887643 343221 1111110000 01111
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHH--hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLA--RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 360 (445)
+.++..... +..|. ..+..++..+. +.....+|.+++....+........+....+......|+++.|.+++..
T Consensus 326 ~r~~~a~lp---~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 326 VRELSASLP---GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHhCC---ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 111111110 12222 22333433322 2234677888887776654223355667777778889999999999883
Q ss_pred H--------HHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHH
Q 047840 361 L--------AEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIY 432 (445)
Q Consensus 361 ~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (445)
. .+.. ..|.+...+...+.+.++.+.|..++....+.=....++. ............-.-.++...+..
T Consensus 402 ~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s--~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS--IALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc--hHHHhHHHHHhHHHHhcCchHHHH
Confidence 3 2222 1345566677778888887778877777654321111111 111111222223334456677777
Q ss_pred HHHHHHHhcc
Q 047840 433 RVIHSFLKMS 442 (445)
Q Consensus 433 ~~~~~~~~~~ 442 (445)
+.++++.+..
T Consensus 479 s~leel~k~n 488 (652)
T KOG2376|consen 479 SLLEELVKFN 488 (652)
T ss_pred HHHHHHHHhC
Confidence 7777776643
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=5.8e-09 Score=89.95 Aligned_cols=248 Identities=11% Similarity=0.071 Sum_probs=170.1
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 345667899999987666 322221223445566778888888876543 3343333 56666666555555444566
Q ss_pred HHHHHHhhcCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 215 HSALSVFEGIS-NK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 215 ~~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
+.+..-+++.. .+ +..........+...|++++|++++..- .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666665443 22 2222223335567789999999988642 3566667788899999999999999999
Q ss_pred hHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 290 MSAVYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
|.+ +..|. +...++.++.. .+.+.+|..+|+++.+.. ++++.+.+.+..++...|++++|.++++++.+.+
T Consensus 157 ~~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~-~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 157 MQQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF-GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS---SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 984 34443 34445554442 347999999999987764 6899999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHcCCh-HHHHHHHHHHHhc
Q 047840 366 ITDFSTHVLSYNIYKEAGWD-MEANKVRKLISET 398 (445)
Q Consensus 366 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 398 (445)
|.++.+...++.+....|+. +.+.+++..+...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999998 6677888887753
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=7.8e-08 Score=76.43 Aligned_cols=193 Identities=11% Similarity=0.035 Sum_probs=132.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (445)
+.-.|.-.|...|+...|..-+++.++.+ +-+..++..+...|.+.|..+.|.+.|+++.+.. +.+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34556667777777777777777777753 2255677777777777777777777777777765 456667777777777
Q ss_pred ccCChHHHHHHhhcCCC-C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 210 KCGHVHSALSVFEGISN-K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 210 ~~g~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
..|++++|...|++... | ...+|..+.-+..+.|+++.|.+.|++..+.... ...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 77777777777776543 3 3446777777777777777777777777765322 3455566666677777777777
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
..++..... ..++..+.-..|..-.+.|+-+.+-++=..+.
T Consensus 194 ~~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 194 LYLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 777777653 33666666666666677777766666555444
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.12 E-value=1.3e-06 Score=81.37 Aligned_cols=398 Identities=15% Similarity=0.111 Sum_probs=251.2
Q ss_pred hcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHh---hhcCCchhHH-------------------HH----HHHHHHHh
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC---VILGPLENFG-------------------MF----VHAHVVKF 60 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~~~~~a-------------------~~----~~~~~~~~ 60 (445)
..++.+.++.-+......+.+.+..++..+...+ ...++.+ ++ .. .+.++...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~E-e~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQE-EVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHH-HHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 3456666777776666666655655555544332 2223333 22 11 11122222
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCCCC-----hhhHH
Q 047840 61 GFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPERN-----AVSWS 132 (445)
Q Consensus 61 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~ 132 (445)
.+.-|..+|..+.-+....|+++.+.+.|++... ...+.|+.+...+...|....|..+++.-..+. +..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556788888888899999999999999998765 356789999999999999999999998765422 22232
Q ss_pred HHHHHH-HhcCCHhHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHcc-----------CChhHHHHHHHHHHHcCCCC
Q 047840 133 AIMAAY-SRISDFKEVLSLFRQMQEV--GM--KPNESGLVSVLTACAHL-----------GAITQGLWVHSYAKRYHLEK 196 (445)
Q Consensus 133 ~l~~~~-~~~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 196 (445)
..-..| -+.+..++++.+-.+.... +. ...+..|..+.-+|... ....++.+.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 222333 3456777777777666551 11 12334455555444321 12446778888888776 33
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC---------
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGIS----NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GTQP--------- 262 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p--------- 262 (445)
|+.+...+.--|+..++++.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+..... |...
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 44444445556788889999988887654 357889999999999999999999998876543 2100
Q ss_pred ---------CHHHHHHHHHHhhc---------C--------------CcHHHHHHHHHHhHH-------hhC--------
Q 047840 263 ---------TETTFVAVLTTCTH---------A--------------KMVRDGLNLFENMSA-------VYG-------- 295 (445)
Q Consensus 263 ---------~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~~~-------~~~-------- 295 (445)
...|...++...-. . .+..++......+.. ..+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 01111222211110 0 011111111111100 001
Q ss_pred -CCCC--------hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 296 -VEPQ--------LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 296 -~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+.|+ ...|......+.+.+..++|...+.+..... +-.+..|......+...|+.++|.+.|..++..+|
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 1111 1234455666778888888888877776544 55667788788888899999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHH--HHHHHHhcCCccCCcccEE
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANK--VRKLISETGMKKKPGCSVI 409 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~ 409 (445)
+++.....++.++.+.|+..-|.. ++..+.+. +|.....|.
T Consensus 716 ~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~--dp~n~eaW~ 758 (799)
T KOG4162|consen 716 DHVPSMTALAELLLELGSPRLAEKRSLLSDALRL--DPLNHEAWY 758 (799)
T ss_pred CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh--CCCCHHHHH
Confidence 999999999999999999888888 77777664 444444453
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.2e-07 Score=75.69 Aligned_cols=382 Identities=12% Similarity=0.031 Sum_probs=239.8
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHH-HHHHHHhcCC
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSS-LLEFYSLVHK 81 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~ 81 (445)
..+.+..+++.|++++..-.++. +.+....+.+..+|....++. .|...++++-.. .|...-|.. -...+-+.+.
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~-~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFA-LAAECYEQLGQL--HPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcc
Confidence 34577788999999988877654 227777888888889999999 888888887763 344433321 2334456788
Q ss_pred HHHHHHHhccCCCC-ChhhHHHHHH--HHHcCCChHHHHHHhccCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 82 MGTARALFDKSPDR-DVVTWTTMVD--GYGKMGDFENARELFEKMPE-RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 82 ~~~a~~~~~~~~~~-~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
+..|.++...+... +...-..-+. .....+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+...+-
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 88888888877663 2222112222 23457888899999999884 66777777777788999999999999998764
Q ss_pred -CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-------------chh--------hhhHHH-------HHH
Q 047840 158 -GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-------------NVI--------LATAVV-------DMY 208 (445)
Q Consensus 158 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~--------~~~~l~-------~~~ 208 (445)
|.. ....|+..+. ..+.++.+.|.++..++++.|+.. |+. .-..++ ..+
T Consensus 174 sGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIe 251 (459)
T KOG4340|consen 174 SGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIE 251 (459)
T ss_pred cCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhh
Confidence 444 4456766554 457789999999999998887542 111 112233 335
Q ss_pred HccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHH
Q 047840 209 SKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 283 (445)
.+.|+++.|.+.+..|+.+ |++|...+.-. -..+++.+..+-+.-+...+. ....||..++-.||+..-++.|
T Consensus 252 yq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lA 329 (459)
T KOG4340|consen 252 YQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLA 329 (459)
T ss_pred hhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHH
Confidence 6789999999999999864 66666554322 224556666666666666544 3467888888889998888888
Q ss_pred HHHHHHhHHhhCC-CCChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHH
Q 047840 284 LNLFENMSAVYGV-EPQLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK---IEVGNRVW 358 (445)
Q Consensus 284 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 358 (445)
-.++.+-... .. -.+...|+ |++++.- .-..++|.+-++.+...- ..-......-++.-....+ ...+++-+
T Consensus 330 ADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~R~ai~~Y 406 (459)
T KOG4340|consen 330 ADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAIRKAVNEY 406 (459)
T ss_pred HHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8877554321 11 12333333 3344333 345566666555442110 0000001111111111111 12333444
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.+++-.+ ....-++.|.+..++..++++|+.-.+.
T Consensus 407 d~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 407 DETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 444443322 4556678899999999999999877654
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=5e-07 Score=82.14 Aligned_cols=262 Identities=12% Similarity=-0.016 Sum_probs=152.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
...+...|++++|.+.+++..+.. +.|...+.. ...+.. .+..+.+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 345567788888888888877642 223333332 222222 3344444444433 111112223344455667788
Q ss_pred cCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhhcCCcHHHHH
Q 047840 211 CGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPTE--TTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~ 284 (445)
.|++++|...+++... .+...+..+...+...|++++|+..+++...... .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888877654 3455677777888888889999888888776432 1222 34556777788889999999
Q ss_pred HHHHHhHHhhCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HHHHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 285 NLFENMSAVYGVEPQLEHY-A--CVVDLLARAGMVEEAEKF---IEEKMGG-LGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
.++++........+..... + .++.-+...|....+.++ ....... ..............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875321111111111 1 222333334433333332 1211111 0011222233566677888999999999
Q ss_pred HHHHHHhCCC---------CchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 358 WRKLAEMGIT---------DFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 358 ~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
++.+....-. ........+.++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9988762211 23344566778889999999999998887654
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.6e-07 Score=80.84 Aligned_cols=357 Identities=12% Similarity=0.068 Sum_probs=235.7
Q ss_pred HHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHcCCChH
Q 047840 38 KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--RD-VVTWTTMVDGYGKMGDFE 114 (445)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~ 114 (445)
.+.+..|+++ .|...|-..+.... +|...|..-..+|++.|++++|.+--.+-.+ |+ +..|+....++.-.|+++
T Consensus 10 naa~s~~d~~-~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFE-TAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHH-HHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 4456789999 89999988887663 4778888888999999999999876655433 44 457999999999999999
Q ss_pred HHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHcc-------CC
Q 047840 115 NARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVL---SLFRQMQEV---GMKPNESGLVSVLTACAHL-------GA 178 (445)
Q Consensus 115 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~p~~~~~~~l~~~~~~~-------~~ 178 (445)
+|+..|.+-.+ | |...++.+..++.......+.. .++..+... ........|..++...-+. .+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999998775 3 4556666666662111110000 001110000 0000112233333222111 01
Q ss_pred hhHHHHHHHHHH--------HcC-------CCC----------------------chhhhhHHHHHHHccCChHHHHHHh
Q 047840 179 ITQGLWVHSYAK--------RYH-------LEK----------------------NVILATAVVDMYSKCGHVHSALSVF 221 (445)
Q Consensus 179 ~~~a~~~~~~~~--------~~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~~ 221 (445)
.....+..-.+. ..+ ..| -..-...+.++..+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111111111 000 011 0112345778888888999999988
Q ss_pred hcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 222 EGISNK--DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF-------VAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 222 ~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
...... +..-++....+|...|.+..+........+.|-. ...-| ..+..+|.+.++++.+...|.+...
T Consensus 248 ~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 248 AKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 876553 4445666677888888888888777776665532 22222 2233456667888888888887765
Q ss_pred hhCCCCChhH-------------------------HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 293 VYGVEPQLEH-------------------------YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 293 ~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
. ...|+... ...-...+.+.|++..|...|.+++... |.|...|....-+|.+
T Consensus 327 e-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 327 E-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLK 404 (539)
T ss_pred h-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHH
Confidence 4 22232211 1111345667899999999999999888 7889999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|.+-.+..
T Consensus 405 L~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 405 LGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999998876654
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.97 E-value=4.2e-06 Score=76.10 Aligned_cols=270 Identities=11% Similarity=0.052 Sum_probs=172.9
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-CCCCHH-HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhH--
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVG-MKPNES-GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA-- 203 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 203 (445)
...|..+...+...|+.+.+.+.+....... ..++.. ........+...|++++|..++++..+.. |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4467777778888888888877777765432 122322 22233445678899999999999998874 444444432
Q ss_pred -HHHHHHccCChHHHHHHhhcCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc
Q 047840 204 -VVDMYSKCGHVHSALSVFEGISNKD---AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279 (445)
Q Consensus 204 -l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 279 (445)
........+..+.+.+.+......+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 2222223456666666666533322 2344456678889999999999999998864 3356677788888999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCHHHH-H--HHHHHHHHcCChHH
Q 047840 280 VRDGLNLFENMSAVYGVEPQL--EHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVW-G--ALLSACRIYGKIEV 353 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~ 353 (445)
+++|...++.........|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988642212332 3455688889999999999999999864431 1222211 1 22333344454443
Q ss_pred HHHHHHHHHH----hCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 354 GNRVWRKLAE----MGIT--DFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 354 a~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+.+. +.+.. ..+. ........+.++...|+.++|..+++.+.....
T Consensus 244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3333 22222 1122 122223677788899999999999999876543
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=2e-06 Score=88.45 Aligned_cols=362 Identities=9% Similarity=-0.023 Sum_probs=215.2
Q ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCCHHHHHHHhccCCC----CChhhHHHHHHHHH
Q 047840 34 PPLIKACVILGPLENFGMFVHAHVVKFGFGEDP-FVVSSLLEFYSLVHKMGTARALFDKSPD----RDVVTWTTMVDGYG 108 (445)
Q Consensus 34 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 108 (445)
......+...|++. .+.... ...+..+.. .............|+++.+..+++.+.. .++.........+.
T Consensus 345 ~raa~~~~~~g~~~-~Al~~a---~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 345 RAAAEAWLAQGFPS-EAIHHA---LAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHCCCHH-HHHHHH---HHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH
Confidence 34445566667766 444433 222211110 1112223344556788888777776632 23333334445556
Q ss_pred cCCChHHHHHHhccCCC----C----C----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 047840 109 KMGDFENARELFEKMPE----R----N----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE----SGLVSVLTA 172 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~----~----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~ 172 (445)
..|++++|...+..... . + ......+...+...|++++|...+++....-...+. ...+.+...
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 77888888887765421 1 1 111222334566789999999999887653111121 234455666
Q ss_pred HHccCChhHHHHHHHHHHHcCC---CC--chhhhhHHHHHHHccCChHHHHHHhhcCCC-------CC----hhhHHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHL---EK--NVILATAVVDMYSKCGHVHSALSVFEGISN-------KD----AGAWNAMI 236 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~ 236 (445)
+...|++++|...+++.....- .+ .......+...+...|+++.|...+++... ++ ...+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 7788999999988888764311 11 123445566778888999999888765432 11 12334455
Q ss_pred HHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH-----HHHH
Q 047840 237 SGVAMNGDAKKSLELFDRMVKS--GTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY-----ACVV 307 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~ 307 (445)
..+...|++++|...+.+.... ...+. ...+..+...+...|+.+.|...+...............+ ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6677789999999888876542 11122 2334445556778899999998888875421111111111 1122
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCchhHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI------TDFSTHVLSYNI 378 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~ 378 (445)
..+...|+.+.|..++........... ...+..+..++...|+.++|...++++..... ....+...++.+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 344567889999998877654221111 11244566778888999999999998877421 123456678888
Q ss_pred HHHcCChHHHHHHHHHHHhcC
Q 047840 379 YKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+.+.|+.++|...+.+..+..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999888887644
No 96
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.95 E-value=1.7e-07 Score=76.44 Aligned_cols=148 Identities=9% Similarity=0.061 Sum_probs=109.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 316 (445)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+. -+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 457777777776444322211 11 0122356677777777777653 356678888888888899999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSAC-RIYGK--IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
++|...|++..... +.+...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|...++
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998888776 56778888888764 56676 4889999999999999888888899999999999999999998
Q ss_pred HHHhcC
Q 047840 394 LISETG 399 (445)
Q Consensus 394 ~m~~~~ 399 (445)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 887643
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=2e-06 Score=80.68 Aligned_cols=346 Identities=11% Similarity=0.070 Sum_probs=187.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHh-c--------CCCChhhHHHHHH
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF-G--------FGEDPFVVSSLLE 74 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~ 74 (445)
.|...|+.+.|.+-++-+. +...|..+.+.|.+.++++ -|.-.+-.|... | -.|+ .+-..+..
T Consensus 737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLD-VAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv 808 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLD-VAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV 808 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhcccc-HHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence 3556677777776666543 3345777777777777666 555554444321 0 1122 22223333
Q ss_pred HHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC-CChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 047840 75 FYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE-RNAVSWSAIMAAYSRISDFKEVLSLFRQ 153 (445)
Q Consensus 75 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 153 (445)
.....|.+++|+.+|.+-.. |..|-..|-..|.+++|.++-+.-.. .--.||......+-..++.+.|++.|++
T Consensus 809 LAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 44566777777777665443 33344555566777777666544322 1223555555666666677777777665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHH
Q 047840 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWN 233 (445)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 233 (445)
... |-...+..|. .++...+++.+.+ .|...|......+-..|+.+.|+.+|.... -|.
T Consensus 884 ~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~f 942 (1416)
T KOG3617|consen 884 AGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYF 942 (1416)
T ss_pred cCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhh
Confidence 311 1111111111 1122222222222 245666666677777788888888877554 356
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC-CC--CChhHHHHHHHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-VE--PQLEHYACVVDLL 310 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~~l~~~~ 310 (445)
.++...|-.|+.++|-++-++- -|......+.+.|-..|++.+|..+|.+...-.+ +. .....-.-|...+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nla 1016 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLA 1016 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666777778888777765542 2445555677778888888888877766652100 00 0000001111111
Q ss_pred H--hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH---------H-HHhCCC-CchhHHHHHH
Q 047840 311 A--RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK---------L-AEMGIT-DFSTHVLSYN 377 (445)
Q Consensus 311 ~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~-~~~~~~-~~~~~~~l~~ 377 (445)
. ...+.-.|.++|++. |.. ....+..|.+.|.+.+|+++-=+ + .+++|. ||.....-++
T Consensus 1017 l~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rcad 1088 (1416)
T KOG3617|consen 1017 LMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCAD 1088 (1416)
T ss_pred hhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1 122334455555554 321 22334456677777777654321 1 225565 7777777888
Q ss_pred HHHHcCChHHHHHHHHHHHh
Q 047840 378 IYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+....+++.|..++-..++
T Consensus 1089 FF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1089 FFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 88888888888887766554
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.93 E-value=1.1e-06 Score=81.25 Aligned_cols=259 Identities=12% Similarity=0.168 Sum_probs=131.3
Q ss_pred HHHHHHHhcCCHHHHHHHhcc--CCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChh-------------------
Q 047840 71 SLLEFYSLVHKMGTARALFDK--SPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAV------------------- 129 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------- 129 (445)
+.+..|.+.|.+-.|.+.-.. ....|......+..++.+..-++.|-++|+++..++..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 457778888887777665322 22235555555555555555555555555555433211
Q ss_pred --------hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhh
Q 047840 130 --------SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILA 201 (445)
Q Consensus 130 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 201 (445)
.-......+...|+++.|+..|-+.. ...-.+.+......+.+|+.+++.+.... .-..-|
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy 768 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYY 768 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccc
Confidence 01112222333344444443332211 01122334445556666666666666553 223345
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 281 (445)
..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+|+.|.++-.+. .|.......|..-..-+-..|++.
T Consensus 769 ~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchh
Confidence 556666777777777777775432 3445566677777777776665443 233334444544444455666666
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRK 360 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 360 (445)
+|.++|-.+. .|+. -|..|-+.|..+..+++..+-. | ..-..|...+..-+-..|+...|..-|-+
T Consensus 842 eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 842 EAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhC--h-hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 6666554442 2332 2445556666666665555431 0 11123344444555555555555544443
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=5.4e-07 Score=74.42 Aligned_cols=305 Identities=11% Similarity=0.037 Sum_probs=149.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHH-HHHHHHhcC
Q 047840 69 VSSLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSA-IMAAYSRIS 142 (445)
Q Consensus 69 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-l~~~~~~~~ 142 (445)
+++++..+.+..+++.|++++..-.++ +....+.|..+|....++..|-..++++.. |...-|.. -...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 455555566667777777766544332 334455566666666666666666666543 32222221 234455566
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHH
Q 047840 143 DFKEVLSLFRQMQEVGMKPNESGLVSVL--TACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220 (445)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 220 (445)
.+..|+++...|.+. |+...-..-+ ......+++..+..+.++.-..| +..+.+.......+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 666666666655432 1111111111 11233445555555544443221 233333333444555555555555
Q ss_pred hhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHhhcCCcHHHHHHHHHHhH
Q 047840 221 FEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA-----VLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 221 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
|+...+- ...+|+..+..| +.++++.|+++..+++++|++..+. ++. .+.+ ...|+. ..+....
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHHH-
Confidence 5544431 223444433332 3445555555555555555431111 000 0000 000000 0000000
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
=...+|.-...+.+.|+++.|.+-+-.|--. .-..|+.|...+.-.= ..+++....+-+.-+++..|-.+.
T Consensus 240 -------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 240 -------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred -------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChH
Confidence 0111222223345678888888877776321 1134667766554322 234555666666667777776777
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
++..+.-.|++..-++-|..++.+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 888888888888888888777653
No 100
>PLN02789 farnesyltranstransferase
Probab=98.92 E-value=5.8e-07 Score=78.75 Aligned_cols=238 Identities=11% Similarity=-0.029 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKP-NESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMY 208 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (445)
+..+-..+...++.++|+.++.+++.. .| +...|+....++...| ++++++..++++.+.+ +.+..+|+...-
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~-- 114 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW-- 114 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH--
Confidence 444445555666777777777776663 23 3334444444444444 3555666665555543 233333433322
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD--AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
.+.+.|+ .++++.+++++.+...+ |..+|+.....+...|+++++++.
T Consensus 115 -----------------------------~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 115 -----------------------------LAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred -----------------------------HHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 2222332 24455666666554332 555666666666666666666666
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhc---CC----hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc----CChHHHH
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARA---GM----VEEAEKFIEEKMGGLGGGDANVWGALLSACRIY----GKIEVGN 355 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~ 355 (445)
++++.+. + ..|...|+....++.+. |. .+++..+..+++... +-|...|+.+...+... ++..+|.
T Consensus 165 ~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 165 CHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHH
Confidence 6666653 2 23344454444333333 22 245666666666555 56777787777777663 3446688
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcC------------------ChHHHHHHHHHHHhcCCccCCcccE
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAG------------------WDMEANKVRKLISETGMKKKPGCSV 408 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~~~~~~~~~~~~~ 408 (445)
+.+.++...+|.++.+...|++.|.... ..++|.++++.+. ..+|-...+|
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 8888877777877778888888887632 2366888888773 4444433344
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=3.4e-07 Score=77.78 Aligned_cols=180 Identities=10% Similarity=0.036 Sum_probs=104.0
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCC---Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHH
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNK---DA---GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE--TTFVA 269 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ 269 (445)
...+..+...+.+.|+++.|...|+++... +. .++..+..++...|++++|+..++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344555555666666666666666654431 11 24455556666666666666666666554221111 12333
Q ss_pred HHHHhhcC--------CcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 270 VLTTCTHA--------KMVRDGLNLFENMSAVYGVEPQL-EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+..++... |+.++|.+.++.+... .|+. ..+..+..... .... . ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 33333332 4555666666666543 2322 12211111100 0000 0 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...+...|++++|+..++++++..|++ +..+..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5667889999999999999999987754 468889999999999999999999888754
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=6.1e-08 Score=74.76 Aligned_cols=92 Identities=8% Similarity=-0.173 Sum_probs=49.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+++.+.+|.++.++..++.++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 34444455555555555555555444 44455555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHHh
Q 047840 385 DMEANKVRKLISE 397 (445)
Q Consensus 385 ~~~A~~~~~~m~~ 397 (445)
+++|...++...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=1.5e-07 Score=72.52 Aligned_cols=125 Identities=8% Similarity=-0.019 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
.++++..+. .|+. +......+...|++++|...|+.+... -+.+...+..+..++...|++++|...|+.....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555553 3443 445677788999999999999999853 2446788889999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
. +.+...+..+..++...|++++|+..|+++++..|+++..+...+.+...
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 7 77889999999999999999999999999999999999888777766543
No 104
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.88 E-value=4.2e-07 Score=89.58 Aligned_cols=204 Identities=13% Similarity=0.135 Sum_probs=143.6
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNK--------DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
|.+...|-..+......++.++|++++++.... -...|.++++.....|.-+...++|+++.+. .-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 444556666677777777777777777766542 1236777777766677777777788777664 112345
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVWGALLSAC 345 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~ 345 (445)
|..|...|.+.+..++|.++++.|.+.++ .....|...++.+.+.++-++|..++.+.++.-. ..........++.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 66777778888888888888888887554 5567777778888777777788888877765421 11344555556666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
.+.|+.+.+..+|+..+...|.....|..+++.-.+.|+.+.+..+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 777888888888888888888777778888888888888888888888887777655
No 105
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=5.3e-06 Score=67.65 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=112.7
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh----
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT---- 275 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~---- 275 (445)
....-...|+..|++++|.+...... +..+...=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhc
Confidence 33334455777777777777777632 2223333344566777888888888888774 26677776766654
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh-HHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI-EVG 354 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a 354 (445)
..+.+.+|.-+|+++.. ..+|+..+.+....++...|++++|..++++.++.. ..++.+...++..-...|.. +-.
T Consensus 185 ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred cchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHH
Confidence 34568888888888875 467888888888888888888888888888888776 56677776666666566655 445
Q ss_pred HHHHHHHHHhCCCCc
Q 047840 355 NRVWRKLAEMGITDF 369 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~ 369 (445)
.+.+.++....|.++
T Consensus 262 ~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 262 ERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHHHhcCCcch
Confidence 567777777777765
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5.1e-07 Score=81.25 Aligned_cols=250 Identities=12% Similarity=0.012 Sum_probs=183.9
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChH
Q 047840 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215 (445)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 215 (445)
.-+.+.|+..+|.-.|+..+..+ +-+...|..|.......++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44678888999999999888764 3377888888888888888889999999998886 667888888888999999888
Q ss_pred HHHHHhhcCCCCC-hhhHHHHH---------HHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 216 SALSVFEGISNKD-AGAWNAMI---------SGVAMNGDAKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 216 ~a~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
.|...|+.-.... ...|.... ..+..........++|-++. ..+..+|......|.-.|--.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887542210 00000000 11122223445556665554 4454577778888888888899999999
Q ss_pred HHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 285 NLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 285 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
..|+.+.. ++| |..+||-|..+++...+.++|+.-|++.++.. |--+.+.-.|...|...|.+++|...|-.++.
T Consensus 451 Dcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999995 355 57889999999999999999999999998654 33456777788899999999999999999887
Q ss_pred hCCC----------CchhHHHHHHHHHHcCChHHHHHH
Q 047840 364 MGIT----------DFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 364 ~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
+.+. +..+|..|=.++.-.++.+-+.++
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5443 123566666666666666644443
No 107
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=6.9e-06 Score=72.06 Aligned_cols=125 Identities=14% Similarity=0.034 Sum_probs=80.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRIS-DFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (445)
++..+-.++...++.++|+.+..++.+. +..+|+.....+...| ++++++..++++...+.+ +..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 4556666777888999999999998863 3445665556666777 689999999999886533 5566665555555
Q ss_pred ccCCh--hHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC
Q 047840 175 HLGAI--TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 175 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
+.|+. +.+..+++.+.+.+ +-+..+|+...-++...|+++++++.+.++.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55542 45566666666554 3445555555545555555555555555443
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.2e-05 Score=75.61 Aligned_cols=239 Identities=13% Similarity=0.141 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (445)
..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++..+.+..-+|.. -..|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence 45666666666666666666555331 14555666666666666666666666655555433332 33556666
Q ss_pred HccCChHHHHHHhhcCCC-----------------------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 209 SKCGHVHSALSVFEGISN-----------------------KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
++.+++.+-++++.--.. .++..|..+...+...|++..|.+.-++. .+..
T Consensus 1177 Akt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred HHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 666666555554321100 02334555555555555555555443322 2455
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGV--EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
||..+-.+|...+.+.-|. + +|+ -....-..-++..|-..|-+++.+.+++..+... +.....|+-|.-
T Consensus 1251 tWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELai 1321 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAI 1321 (1666)
T ss_pred HHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHH
Confidence 6666666666554443221 1 122 2234445566677777777777777776654222 223344555555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.|.+- +.++..+.++-.-.. . -.--+++++.++.-|.|..-++.+-.
T Consensus 1322 LYsky-kp~km~EHl~LFwsR-v----NipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1322 LYSKY-KPEKMMEHLKLFWSR-V----NIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred HHHhc-CHHHHHHHHHHHHHh-c----chHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55443 344443333322211 0 11234556666666666666555443
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=2.1e-06 Score=69.99 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=108.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
..+-..+...|+-+....+....... .+-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|-+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455566666666666666554332 122444444566667777777777777777765 456677777777777777
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.|+++.|..-|.+..+.. +.++...+.+...+.-.|+.+.|..++.+.....+.+..+-..++.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 777777777777776654 4566667777777777777777777777777777777777777777777777777777665
Q ss_pred H
Q 047840 393 K 393 (445)
Q Consensus 393 ~ 393 (445)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 4
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=2e-06 Score=70.23 Aligned_cols=155 Identities=10% Similarity=0.160 Sum_probs=116.6
Q ss_pred HHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHH
Q 047840 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 285 (445)
..|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667777766655443322221 01123566778888888777764 4478888899999999999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLL-ARAGM--VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
.|+...+. .+.+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+...|++++|+..|++++
T Consensus 95 a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 95 AYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999864 234577777777764 67777 599999999999887 6788899999999999999999999999999
Q ss_pred HhCCCCchhH
Q 047840 363 EMGITDFSTH 372 (445)
Q Consensus 363 ~~~~~~~~~~ 372 (445)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888755433
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=2.4e-06 Score=79.18 Aligned_cols=214 Identities=12% Similarity=0.007 Sum_probs=158.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCC
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 244 (445)
..+...+.+.|-...|..++++.. .+...+.+|+..|+..+|..+..+..+ +|+..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345566777777888888877654 345577888888888888887765443 577777777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.. +....+|-.+.-+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 78888877754322 11112222334678888888888776532 3345677777777788899999999998
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...... +.+...||.+-.+|.+.++-.+|...++++.+..-.+..+|..........|.+++|.+.+.++.+..
T Consensus 544 rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 887654 45567899999999999999999999999999887788888888888899999999999888887543
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.76 E-value=4.6e-06 Score=77.36 Aligned_cols=191 Identities=15% Similarity=0.139 Sum_probs=160.8
Q ss_pred CCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
.+|-...-..+...+...|-...|..+|+++ ..|.-.+.+|+..|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566677888899999999999999875 4677888999999999999999988877 37899999999888
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.++++.
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 87777788888888776642 11222233345799999999999877666 5677889999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
|.+.|..-...+|++...|+.+..+|.+.|+-.+|...+++..+.+.
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999988874
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=4.9e-05 Score=78.38 Aligned_cols=324 Identities=11% Similarity=0.009 Sum_probs=198.7
Q ss_pred HHHhcCCHHHHHHHhccCCCCChh--hHHHHHHHHHcCCChHHHHHHhccCCC----CChhhHHHHHHHHHhcCCHhHHH
Q 047840 75 FYSLVHKMGTARALFDKSPDRDVV--TWTTMVDGYGKMGDFENARELFEKMPE----RNAVSWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 75 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~ 148 (445)
.+...|++.+|..........+.. ............|+++.+..+++.+.. .+..........+...|+++++.
T Consensus 350 ~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~ 429 (903)
T PRK04841 350 AWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVN 429 (903)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHH
Confidence 344445555555444443322111 111223345567888888888887742 23333344555667889999999
Q ss_pred HHHHHHHHcC--C----CCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch----hhhhHHHHHHHccCChHH
Q 047840 149 SLFRQMQEVG--M----KPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV----ILATAVVDMYSKCGHVHS 216 (445)
Q Consensus 149 ~~~~~~~~~~--~----~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 216 (445)
..+......- . .|. ......+...+...|++++|...+++....-...+. ...+.+...+...|+++.
T Consensus 430 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~ 509 (903)
T PRK04841 430 TLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELAR 509 (903)
T ss_pred HHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9998775421 1 111 112223334566889999999999988763211121 234556667788999999
Q ss_pred HHHHhhcCCC-------CC--hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHhhcCCcH
Q 047840 217 ALSVFEGISN-------KD--AGAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQ--P-TETTFVAVLTTCTHAKMV 280 (445)
Q Consensus 217 a~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--p-~~~~~~~l~~~~~~~~~~ 280 (445)
|...+.+... +. ..++..+...+...|+++.|...+++.... +.. | ....+..+...+...|++
T Consensus 510 A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~ 589 (903)
T PRK04841 510 ALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARL 589 (903)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999877642 11 224455667788999999999998876542 221 1 223344445556677999
Q ss_pred HHHHHHHHHhHHhhC-CCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCCHHHH-----HHHHHHHHHcCCh
Q 047840 281 RDGLNLFENMSAVYG-VEP--QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGDANVW-----GALLSACRIYGKI 351 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~ 351 (445)
++|...+.+...... ..+ ....+..+...+...|++++|...++......- ......+ ...+..+...|+.
T Consensus 590 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 590 DEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred HHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 999999888764211 112 133344456677889999999999888743210 1111111 1122344567899
Q ss_pred HHHHHHHHHHHHhCCCCchh----HHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 352 EVGNRVWRKLAEMGITDFST----HVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.|.+.+.......+..... ...++.++...|++++|...+++....
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999887765433222211 456788899999999999998887653
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.75 E-value=2.4e-05 Score=72.90 Aligned_cols=258 Identities=12% Similarity=0.124 Sum_probs=141.9
Q ss_pred HcCCChHHHHHHhccCCCCChh--hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 047840 108 GKMGDFENARELFEKMPERNAV--SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWV 185 (445)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 185 (445)
.....+.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.- .++-.|..|.+.|++..|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 3445555666666655544332 25555666666666666666664321 233445566666666666665
Q ss_pred HHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 186 HSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
-.+.. |.......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++..+-.. ..-..
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~d 883 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHD 883 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhH
Confidence 54432 3233444555555555666666666666666555543 35566666666666666554321 11234
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHH--------
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-------- 337 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------- 337 (445)
|-..+..-+-..|++..|...|-+.. -|.+-++.|...+.+++|.++-+.- | ..|..-
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte---g-g~n~~k~v~flwak 949 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE---G-GANAEKHVAFLWAK 949 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc---c-cccHHHHHHHHHHH
Confidence 55556666777788888887775554 2344555666666666666654432 2 111111
Q ss_pred ----------------HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 338 ----------------WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 338 ----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
...-+...+..+-++-|.++-+-..+.. .+.....++..+...|++++|.+-+-+..+.+.
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 1111222233444445544444333322 234566777788889999999887776666544
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=1.1e-06 Score=74.69 Aligned_cols=184 Identities=11% Similarity=0.037 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch---hhhhHHHHHHHccCChHHHHHHhhcCCCC---Chh---h
Q 047840 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV---ILATAVVDMYSKCGHVHSALSVFEGISNK---DAG---A 231 (445)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---~ 231 (445)
.....+..+...+...|+++.|...++++.+.. +.+. ..+..+..++.+.|+++.|...++++.+. +.. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 356678888889999999999999999998764 2222 46677889999999999999999988642 222 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhH
Q 047840 232 WNAMISGVAMN--------GDAKKSLELFDRMVKSGTQPTET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302 (445)
Q Consensus 232 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (445)
+..+..++... |++++|.+.++++... .|+.. ....+... ..+... . ...
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~----~-~~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR----L-AGK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH----H-HHH
Confidence 55555666554 7789999999999876 34432 22211111 111100 0 011
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGL--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
...+...|.+.|++.+|...+++..+.. -+.....+..++.++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1245677889999999999999987653 123457888999999999999999999888877655
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.72 E-value=3e-06 Score=81.94 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+..+..|.....+.|++++|..+++...+. .|+ ......+...+.+.+++++|....++.... -+-+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 445555555555566666666666655553 333 233444455555556666666666555532 122233444455
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++++...+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55555666666666666655533 333555555555555666666666666666554433
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=8.2e-06 Score=80.93 Aligned_cols=232 Identities=12% Similarity=0.149 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCC---CchhhhhHHHHHHHccCChHHHHHHhhcCCCC-C-hhhHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLE---KNVILATAVVDMYSKCGHVHSALSVFEGISNK-D-AGAWNAM 235 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~l 235 (445)
+...|...+......++.+.|.++.++++.. ++. --..+|.++++....-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4566777888888899999999999888753 111 12356777777777778888888899888763 3 3478889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+...-.-......-.+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999886 44577889999999999999999999999998641111134455566666778999
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH-cCChHHHHHHH
Q 047840 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKE-AGWDMEANKVR 392 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g~~~~A~~~~ 392 (445)
.++++.+|+..+... |.-...|+.+++.-.++|+.+.+..+|++++.+... ....++-.---|.+ .|+-+.++.+=
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999999988765 667788999999999999999999999999986543 44444433333444 46655444443
Q ss_pred HHH
Q 047840 393 KLI 395 (445)
Q Consensus 393 ~~m 395 (445)
.+.
T Consensus 1695 arA 1697 (1710)
T KOG1070|consen 1695 ARA 1697 (1710)
T ss_pred HHH
Confidence 333
No 118
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=4.7e-05 Score=73.39 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=114.4
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
+.+++|.++-++.. .+..|+.+..+-.+.|...+|++-|-+. -|+..|..++....+.|.+++-..++...+
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34444444444433 3457899999999999999999877543 367789999999999999999999998887
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+. .-.|... +.|+-+|++.+++.+.++++. .||......+.+-|...|.++.|.-+|..+ +-
T Consensus 1161 kk-~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN 1222 (1666)
T KOG0985|consen 1161 KK-VREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SN 1222 (1666)
T ss_pred Hh-hcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hh
Confidence 75 5555554 578889999999888777653 488888888888898888888887777654 23
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 047840 372 HVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~~~ 392 (445)
|..|+..+...|++..|...-
T Consensus 1223 ~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 555666666666666555433
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.68 E-value=0.00023 Score=64.26 Aligned_cols=132 Identities=12% Similarity=0.120 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
|-..+..-.+......|..+|.+..+.+..+ +....++++..++. ++.+.|.++|+.-.+.+|- ++......++-+
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL 445 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFL 445 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence 3344444444444455555555554444433 33444444444332 4444555555444433211 112223344444
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
...++-..|..+|++.+..++.|+ ..+|..++.--...|+...+.++-++....-|
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 444554555555555544433332 23455555544455555555555555444443
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=7.1e-07 Score=68.48 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
.....+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666777777777777777776655 5566777777777777777777777777777777777777777777777
Q ss_pred HcCChHHHHHHHHHHHhc
Q 047840 381 EAGWDMEANKVRKLISET 398 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m~~~ 398 (445)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766654
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00027 Score=63.80 Aligned_cols=120 Identities=11% Similarity=0.059 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
.+....+++++.......|+. +|..+++.-.+..-+..|+.+|.++.+.+..+ ++.+.++++.-++ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 555666777777654555553 56677787788888899999999988776666 6777888887665 47888999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCc
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
+--+...++++..-...++.+...++-..|..+|++....++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9988888888777777888888899999999999998877554
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.66 E-value=2.3e-05 Score=76.89 Aligned_cols=236 Identities=9% Similarity=0.035 Sum_probs=152.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccCCC--CC-hhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhc
Q 047840 65 DPFVVSSLLEFYSLVHKMGTARALFDKSPD--RD-VVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRI 141 (445)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 141 (445)
+...+..|+..+...+++++|.++.+...+ |+ ...|-.+...+.+.++.+.+..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 345667777777777777777777765443 22 22333333355555554333222 344445555
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHh
Q 047840 142 SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVF 221 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 221 (445)
.++.-+..++..+... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|... ++++|..++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 5564444444555542 2345577778888888888888888888888887 66788888888888888 888888877
Q ss_pred hcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh
Q 047840 222 EGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE 301 (445)
Q Consensus 222 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (445)
.+. +..|...+++..+.++|.++.... |+.. +.-..+.+.+....+..--..
T Consensus 173 ~KA-----------V~~~i~~kq~~~~~e~W~k~~~~~--~~d~---------------d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 173 KKA-----------IYRFIKKKQYVGIEEIWSKLVHYN--SDDF---------------DFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred HHH-----------HHHHHhhhcchHHHHHHHHHHhcC--cccc---------------hHHHHHHHHHHhhhccchhHH
Confidence 654 344677778888888888887752 2222 222233333333223333455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
++-.+...|...++++++..+++.+++.. +.|.....-++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 66677777888888889999988888776 567777777777775
No 123
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=6e-05 Score=71.20 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=102.0
Q ss_pred hhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC-CChhhHHHHHHHHHcCCChHHHHH
Q 047840 40 CVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARE 118 (445)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~ 118 (445)
....|-.+ .|..+|.+..+. ..|=+.|-..|.+++|.++-+.-.. .=..+|.....-+-..++.+.|++
T Consensus 810 AieLgMlE-eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLE-EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHH-HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 35677788 899998887773 3455677788999999988765433 123456666666677888889988
Q ss_pred HhccCCCC-----------------------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 119 LFEKMPER-----------------------NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 119 ~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
.|++...+ |...|.-....+-..|+.|.|+.+|....+ |-.+++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 88876432 333344444445555666666666655432 3445555566
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.|+.++|-++-++- .|......|.+.|-..|++.+|..+|.+.
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66666666654432 24455556667777777777777766554
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.8e-05 Score=64.60 Aligned_cols=245 Identities=10% Similarity=0.033 Sum_probs=157.7
Q ss_pred HHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChH
Q 047840 136 AAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVH 215 (445)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 215 (445)
+-+.-.|++..++..-...... +-+...-.-+.++|...|....... ++.... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 4455567777776655544332 1344444445566666665443221 111111 222333333333333333333
Q ss_pred HHH-HHhhcCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 047840 216 SAL-SVFEGISNK----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290 (445)
Q Consensus 216 ~a~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (445)
.-. ++.+.+..+ +......-...|+..+++++|++..... - +......=+..+.+..+.+-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 222333322 2222333345688999999999988762 1 2222222334456778899999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 291 SAVYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
.+- .+..+.+.|..++.+ .+.+.+|.-+|++|-++- +|+..+.+....++...|++++|..+++.++..++
T Consensus 164 q~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 164 QQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred Hcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 852 455666767776654 567899999999998754 79999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHcCChHHHHH-HHHHHHh
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANK-VRKLISE 397 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 397 (445)
.++.+...++.+-...|+..++.+ .+..++.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999899998877665 6666554
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.65 E-value=0.00051 Score=65.81 Aligned_cols=215 Identities=13% Similarity=0.166 Sum_probs=131.4
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHh--hhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKAC--VILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
....++++.|+.-..++.+.- ||.. |..++.++ .+.|+.+ .|..+++.....+.. |..|...+-.+|...|+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~-ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGD-EALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCch-hHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 455788999999999988754 6655 44555554 6888998 888888776665544 777888899999999999
Q ss_pred HHHHHHhccCCC--CChhhHHHHHHHHHcCCCh----HHHHHHhccCCCCChhhHHHHHHHHHhc-CC---------HhH
Q 047840 83 GTARALFDKSPD--RDVVTWTTMVDGYGKMGDF----ENARELFEKMPERNAVSWSAIMAAYSRI-SD---------FKE 146 (445)
Q Consensus 83 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~ 146 (445)
++|..+|++... |+......+..+|++.+++ ..|+++++..++.--.-|+ +++...+. .. ..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHH
Confidence 999999999876 5555555666777777765 4467777766543333333 23322221 11 123
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCChhHHHHHH-HHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 147 VLSLFRQMQEVG-MKPNESGLVSVLTACAHLGAITQGLWVH-SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 147 a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
|.+.++.+.+.+ ---+..-...-...+...|++++|..++ ....+.-...+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444555554433 1112222333344455667777777777 33333323334444445556666666666655555444
Q ss_pred C
Q 047840 225 S 225 (445)
Q Consensus 225 ~ 225 (445)
.
T Consensus 253 l 253 (932)
T KOG2053|consen 253 L 253 (932)
T ss_pred H
Confidence 3
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=4.7e-05 Score=67.79 Aligned_cols=114 Identities=19% Similarity=0.065 Sum_probs=53.9
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
..|++++|+..++.+... .+-|+..+....+.+.+.++.++|.+.++++.... +.....+..+..++.+.|+..+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHH
Confidence 334555555555554432 12222233333445555555555555555554433 122344444555555555555555
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHH
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.++++.....|+++..|..|+.+|...|+..+|....
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 5555555555555555555555555554444444333
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=5.9e-06 Score=67.42 Aligned_cols=137 Identities=15% Similarity=0.068 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
.|.......+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+++..... ++|..+|+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 34333335556667777888888887777653 334455666778999999999999999999998877 899999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+..+|.+.|+++.|..-|.++.++.|.++.+.+.++..|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876554
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.8e-05 Score=70.27 Aligned_cols=144 Identities=16% Similarity=0.148 Sum_probs=116.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHH
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF-VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLL 310 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 310 (445)
.-....+...|.+++|+..++.+... .|+...| ......+...++.++|.+.++.+... .|+ ....-.+..+|
T Consensus 310 YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~al 384 (484)
T COG4783 310 YGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHH
Confidence 33344556788999999999998876 4555444 45556689999999999999999954 676 45556788999
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
.+.|++.+|..+++...... +.|+..|..|.++|...|+..++... .++.|...|+++.|..
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAII 446 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHH
Confidence 99999999999999988776 88999999999999999999887544 4557888899999999
Q ss_pred HHHHHHhcC
Q 047840 391 VRKLISETG 399 (445)
Q Consensus 391 ~~~~m~~~~ 399 (445)
.+....+..
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 888887654
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=5.6e-08 Score=53.44 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=22.3
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=4.7e-08 Score=53.72 Aligned_cols=34 Identities=24% Similarity=0.493 Sum_probs=29.4
Q ss_pred cCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 258 SGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 258 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
+|+.||..||+.++.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999998873
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.61 E-value=1.6e-05 Score=77.88 Aligned_cols=231 Identities=11% Similarity=0.081 Sum_probs=152.2
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE-SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 5667888999999999999999999877664 4544 3333444455666665554444 2 22
Q ss_pred HHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHH
Q 047840 206 DMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDG 283 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 283 (445)
.......++.-..-+...+.. .+..++..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 333333333223333333332 233467788899999999999999999999876 34778888888888888 99999
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHH---HHH--hcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 284 LNLFENMSAVYGVEPQLEHYACVVD---LLA--RAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
.+++.++...+ -+..-|+.+.. -++ ...+++.-..+.+.+... +...-+.++..+-..|....+++++..+
T Consensus 169 ~~m~~KAV~~~---i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 169 ITYLKKAIYRF---IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHH---HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 99988887641 11111221111 111 223444444445444433 3334455566666788888999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHH
Q 047840 358 WRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
++.+++.+|.+..+...++.+|..
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHH
Confidence 999999999998888899988873
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=2.1e-06 Score=76.79 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=105.8
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
....++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++.+.++.. +.+...+......|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445666677788999999999999865 355 44457788888888899999999988665 56778888888889
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999888775
No 133
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.57 E-value=2.4e-05 Score=75.27 Aligned_cols=373 Identities=10% Similarity=0.044 Sum_probs=197.7
Q ss_pred chHHHHHHHHHHhcCCCCC-cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHh
Q 047840 11 PKLSVFCYLDMLDMGFEPN-NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALF 89 (445)
Q Consensus 11 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 89 (445)
...|+..|-+..+.. |+ ...|..+...|+...+.. .|.+.|+...... ..+...+......|++..+++.|..+.
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~-RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMK-RAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 444555554444422 32 235666666666666666 6777777665533 224445666777777777777777764
Q ss_pred ccCCCC-----ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 047840 90 DKSPDR-----DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161 (445)
Q Consensus 90 ~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 161 (445)
-..-+. -...|....-.|.+.++...|..-|+.... | |...|..++.+|...|++..|+++|.+... ++|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 322221 122344445556667777777777776654 2 555677777788888888888888877665 344
Q ss_pred CHHHHHH--HHHHHHccCChhHHHHHHHHHHHcC------CCCchhhhhHHHHHHHccCChHHHHHHhhcCCC-------
Q 047840 162 NESGLVS--VLTACAHLGAITQGLWVHSYAKRYH------LEKNVILATAVVDMYSKCGHVHSALSVFEGISN------- 226 (445)
Q Consensus 162 ~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 226 (445)
+. +|.. ....-+..|.+.++...+....... ...-..++-.+...+.-.|-..+|..++++-.+
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 32 2222 1222356677777776666654321 011111222222222222322333333322111
Q ss_pred ----CChhhHHHHHHHHH---hcC--Ch-HHHHHH-HHHHHHcCCCC--------------------CHHHHHHHHHHhh
Q 047840 227 ----KDAGAWNAMISGVA---MNG--DA-KKSLEL-FDRMVKSGTQP--------------------TETTFVAVLTTCT 275 (445)
Q Consensus 227 ----~~~~~~~~l~~~~~---~~~--~~-~~a~~~-~~~m~~~~~~p--------------------~~~~~~~l~~~~~ 275 (445)
.+...|-.+-.++. ... -+ .....+ +.+....+.-| +..+|..+...|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 11112221111110 000 00 000000 01111111111 1122222222211
Q ss_pred c--------CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 276 H--------AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 276 ~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
+ ..+...|...+....+. ...+..+|+.|.-. ...|++.-|..-|-.-.... +....+|..+...+..
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEe
Confidence 1 12233566666666542 12344455554433 55566666666665544434 5566778888888888
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
..+++.|...|.....++|.+...|...+.+-...|+.-++..+|..
T Consensus 863 n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred cccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 89999999999999999999988998888888889998888888877
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=1.9e-06 Score=65.37 Aligned_cols=96 Identities=11% Similarity=-0.022 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
..-.+...+...|++++|.++|+-+.... +-+..-|..|.-++...|++++|+..|..+..++|+++.++..++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33445556778999999999999987766 66778899999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 047840 382 AGWDMEANKVRKLISET 398 (445)
Q Consensus 382 ~g~~~~A~~~~~~m~~~ 398 (445)
.|+.+.|.+.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999987753
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=3.6e-05 Score=62.44 Aligned_cols=134 Identities=10% Similarity=0.146 Sum_probs=99.6
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
+-..|++++|+++++.+.+.+ +-|..++..-+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHH
Confidence 345678888888888888764 33556666666666667777788888888876 557788899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYG---KIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
|.-.+++++-.. |.++..+..+...+.-.| +.+-+.+.|.+.++..|.+...+..+.
T Consensus 173 A~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 173 AAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 999998887655 566666777776655444 567888899999988886655555443
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=4.8e-06 Score=63.82 Aligned_cols=116 Identities=10% Similarity=-0.036 Sum_probs=92.9
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 251 LFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 251 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+...+...|++++|...++...+.
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455443 33 3345566677788899999999999998863 2446778888889999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 330 LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+ +.+...+..+...+...|++++|...|+++++.+|++...
T Consensus 81 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 D-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 6 6678888889999999999999999999999999986643
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.53 E-value=8.6e-06 Score=78.15 Aligned_cols=324 Identities=14% Similarity=0.083 Sum_probs=197.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCCC-----ChhhHHHHHHHH
Q 047840 67 FVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPER-----NAVSWSAIMAAY 138 (445)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~ 138 (445)
..|..|...|....+...|...|+...+ .+...+......|++..+++.|..+.-...+. -...|....-.|
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4677788888877788888888887655 36677888888999999999988884333332 122233445567
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHH
Q 047840 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
.+.++..+|+.-|+...... +-|...|..+..+|...|.+..|.++|.++.... |.+...-.-..-..+..|.+.+|.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 78888889988888877653 2377888899999999999999999998887664 223333233344457778888888
Q ss_pred HHhhcCCCC----------ChhhHHHHHHHHHhcCChHHHHHHHHH-------HHHcCCCCCHHHHHHHHHH--------
Q 047840 219 SVFEGISNK----------DAGAWNAMISGVAMNGDAKKSLELFDR-------MVKSGTQPTETTFVAVLTT-------- 273 (445)
Q Consensus 219 ~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~-------m~~~~~~p~~~~~~~l~~~-------- 273 (445)
..+..+... -..++..+...+.-.|-..++.+.+++ ........+...|..+-.+
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 887665421 112222222222222322222222222 2111111111111111111
Q ss_pred ---------------hhcCCcH---H---HHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cC----ChHHHHHHHH
Q 047840 274 ---------------CTHAKMV---R---DGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AG----MVEEAEKFIE 324 (445)
Q Consensus 274 ---------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~A~~~~~ 324 (445)
.-..+.. + -+.+.+-.-. .+..+..+|..++..|.+ .| +...|...+.
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 1111111 1 0111111111 112234455555444433 22 2346777777
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..++.. ..+..+|+.|.-. ...|++.-+...|-+.....|.....|..++-.+.+..+++.|...|.+...
T Consensus 808 kaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 808 KAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 766555 5677788887766 6668888888899888889998888899999999999999999999987754
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=9e-05 Score=71.96 Aligned_cols=146 Identities=14% Similarity=0.189 Sum_probs=121.2
Q ss_pred CCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047840 194 LEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV 270 (445)
Q Consensus 194 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 270 (445)
.+.+...+..|.....+.|.+++|..+++...+ | +......++..+.+.+++++|+..+++....... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 356688899999999999999999999998765 3 5667888899999999999999999999887432 55666777
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
..++.+.|++++|..+|+++... .+-+...+..+..++...|+.++|...|+...+.. .|....|+.++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH
Confidence 77889999999999999999963 23347888899999999999999999999998765 456666666553
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=1.5e-05 Score=61.69 Aligned_cols=127 Identities=13% Similarity=0.035 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALL 342 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 342 (445)
.|..++..+ ..++...+...++.+...++-.| .....-.+...+...|++++|...|+.+......|+ ......+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344445444 36778888888888886521111 112233455677788888888888888887652222 23455677
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
..+...|++++|+..++... ..+-.+..+...+++|.+.|++++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888888888888886632 2222455677788888888998888888875
No 140
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.40 E-value=7e-06 Score=58.33 Aligned_cols=94 Identities=19% Similarity=0.094 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.+++.....|.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4556677788899999999998887665 455577888888888889999999999999988888777888888899999
Q ss_pred CChHHHHHHHHHHHh
Q 047840 383 GWDMEANKVRKLISE 397 (445)
Q Consensus 383 g~~~~A~~~~~~m~~ 397 (445)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999988887754
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=0.00014 Score=59.13 Aligned_cols=164 Identities=11% Similarity=0.045 Sum_probs=126.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV-LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
|..++-+....|+.+.|...++++.++ + |.+.-...+ ..-+-..|++++|.++++.+..+ -+.|..++.-=+...
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 344455666788999999999998876 3 444332222 22355679999999999999975 255666776666667
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC---ChHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG---WDME 387 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 387 (445)
...|+.-+|++-+.+..+.- ..|...|..+...|...|++++|.-.+++++-..|-++..+..+++.+.-.| +..-
T Consensus 131 ka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888889998888877654 7899999999999999999999999999999999999999999999876665 4555
Q ss_pred HHHHHHHHHhcCC
Q 047840 388 ANKVRKLISETGM 400 (445)
Q Consensus 388 A~~~~~~m~~~~~ 400 (445)
|.+++.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 6677777665433
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=2e-05 Score=70.58 Aligned_cols=121 Identities=14% Similarity=0.124 Sum_probs=62.8
Q ss_pred HHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 103 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
|+..+...++++.|..+|+++.+.++.....+++.+...++..+|++++++..... +-+...+..-...+.+.++.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 33444445555555555555555444444455555555555555555555555432 22444444444555555555555
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCC
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
..+.+++.+.. |.+-.+|..|..+|.+.|+++.|+..++.++
T Consensus 254 L~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55555555542 2333455555555555555555555555443
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.29 E-value=3.2e-05 Score=57.71 Aligned_cols=92 Identities=13% Similarity=-0.009 Sum_probs=43.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHH
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNI 378 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~ 378 (445)
.++..+.+.|++++|.+.|..+.+.. +.+ ...+..+..++...|+++.|...++.+....|.+ +.++..++.+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444445555555555555544332 111 2334444555555555555555555555544432 2334445555
Q ss_pred HHHcCChHHHHHHHHHHHh
Q 047840 379 YKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+.|++++|...++.+.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 5555555555555555544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.27 E-value=2e-06 Score=59.57 Aligned_cols=81 Identities=20% Similarity=0.077 Sum_probs=57.8
Q ss_pred cCChHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGLGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.++.++.....++.++.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46778888888887765421 2455566678888888888888888888 666666666666778888888888888887
Q ss_pred HHH
Q 047840 392 RKL 394 (445)
Q Consensus 392 ~~~ 394 (445)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.7e-06 Score=47.50 Aligned_cols=33 Identities=24% Similarity=0.644 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 162 (445)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=2.7e-05 Score=70.07 Aligned_cols=109 Identities=13% Similarity=0.001 Sum_probs=92.4
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (445)
...+...|++++|+..|+++.+. -+.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 44566789999999999999964 23457778888899999999999999999998876 6678899999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 351 IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+++|+..|+++++.+|.++.....+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887777665554443
No 147
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.20 E-value=3.3e-06 Score=46.80 Aligned_cols=33 Identities=33% Similarity=0.629 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP 161 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 161 (445)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777888888888888888888887777766
No 148
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.17 E-value=9e-05 Score=55.22 Aligned_cols=107 Identities=9% Similarity=0.008 Sum_probs=72.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC--CCCHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG--GGDANVWGALL 342 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~ 342 (445)
++..+...+...|++++|...+..+...+.-.+ ....+..+..++.+.|++++|...|+.+..... +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444556666777888888888887775421111 133455677778888888888888888765431 11245677777
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
.++...|+.++|...++++++..|++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 788888888888888888888888765443
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=4.6e-06 Score=46.53 Aligned_cols=33 Identities=33% Similarity=0.762 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888776
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.17 E-value=7.2e-05 Score=67.31 Aligned_cols=100 Identities=7% Similarity=0.031 Sum_probs=80.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 314 (445)
-...+...|++++|++.|++...... -+...|..+..+|...|++++|+..++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 35567788999999999999998743 36777888888999999999999999999864 2335777888889999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
++++|...|++.++.. +.+....
T Consensus 85 ~~~eA~~~~~~al~l~-P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASLA-PGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHH
Confidence 9999999999998765 3344433
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.16 E-value=1.2e-05 Score=53.26 Aligned_cols=64 Identities=17% Similarity=0.029 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC-ChHHHHHHHHHHHh
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG-WDMEANKVRKLISE 397 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 397 (445)
++.+|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46778888888999999999999999999999998889999999999998 68999988887764
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.15 E-value=1.5e-05 Score=51.96 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..+...|++++|.+.|+++++.. +-+...+..+..++...|++++|...|+++++..|++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34445555555555555555444 3344555555555555555555555555555555543
No 153
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00022 Score=55.25 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=86.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh--hHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL--EHYACVV 307 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~ 307 (445)
|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...|+. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 44445544 47888888888888887632211 223333456677889999999999998875 322221 2334467
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
..+...|++++|+..++..... ...+..+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788899999999999775322 345566778888899999999999988875
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00023 Score=62.05 Aligned_cols=158 Identities=10% Similarity=0.002 Sum_probs=102.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHH--------
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT--CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV-------- 306 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 306 (445)
.++.-.|++++|...--...+... ...+...+++ +-..++.+.+...|.+.. .+.|+...-..+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 345566777777776665555321 1122223333 335567777777777776 335543322111
Q ss_pred -----HHHHHhcCChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 307 -----VDLLARAGMVEEAEKFIEEKMGG---LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 307 -----~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
..-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+.+..+++.-..++..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 12234678888888888887643 2345556677677777788888888888888888888777778888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCC
Q 047840 379 YKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+...++|++|.+-++...+..-
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 8888888888887777665433
No 155
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=5e-05 Score=53.75 Aligned_cols=95 Identities=17% Similarity=0.098 Sum_probs=57.5
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3444455566666666666666542 12233455556666666677777777776666544 34445666666667777
Q ss_pred CChHHHHHHHHHHHHhCC
Q 047840 349 GKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~ 366 (445)
|+.+.|...+.+..+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777776666554
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=4.5e-05 Score=63.70 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=80.9
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
+.+.+++.+|...|.+.+. +.| |...|..=..+|.+.|.++.|.+-.+..+..+ +....+|..|..+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4567888888888888884 344 45556666778888888888888888777655 445678888888888888888
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChH
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 386 (445)
+|++.|+++++++|++......|-.+-.+.+...
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 8888888888888887766666666555555444
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.09 E-value=8e-06 Score=45.17 Aligned_cols=33 Identities=36% Similarity=0.711 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 262 (445)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.0039 Score=60.04 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=52.6
Q ss_pred cCCChHHHHHHhccCCC--CChhhHHHHHHH--HHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHH
Q 047840 109 KMGDFENARELFEKMPE--RNAVSWSAIMAA--YSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLW 184 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (445)
..+++..|.+...++.+ |+. .|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...++.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 44555555555555543 222 12222222 34556666666555555443322 55566666666666666666666
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
+|++..+. .|+......+..+|.+.+.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHH
Confidence 66666554 33444445555555555544
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00028 Score=59.40 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=90.6
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCchhHH
Q 047840 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG---KIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
+-|...|-.|..+|...|++..|..-|.+..+.. ++++..+..+..++.... ...++..+|++++..+|.++.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 5678899999999999999999999999988776 677888887777764432 347889999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCccCCc
Q 047840 374 LSYNIYKEAGWDMEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 405 (445)
.|+..+...|++.+|...++.|.+..-...|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999998765544443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=0.00013 Score=58.39 Aligned_cols=85 Identities=14% Similarity=-0.034 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
...+..+...+...|++++|...|++.++....+. ...+..+...+...|++++|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34455666667777888888888877765432221 3567777778888888888888888888888877777777777
Q ss_pred HHHHcCC
Q 047840 378 IYKEAGW 384 (445)
Q Consensus 378 ~~~~~g~ 384 (445)
++...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 7777766
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.03 E-value=0.0003 Score=61.03 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888889999999999998543 2234445444444 33457788899999999985 4567788889999
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDA---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.+...|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+..+.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999866 23333 5899999999999999999999999999877743
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.02 E-value=0.0091 Score=53.21 Aligned_cols=381 Identities=9% Similarity=0.004 Sum_probs=198.6
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcc------cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHH--H
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNY------TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF--Y 76 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 76 (445)
+-+++++.+|..+|.+..+.- ..++. .-+.+++++... +.+ ..........+. .| ...|-.+..+ +
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld-~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLD-LMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHH-HHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 456899999999999987642 22222 234566776554 444 444444444442 22 2233333333 3
Q ss_pred HhcCCHHHHHHHhccCCC-------C-----------ChhhHHHHHHHHHcCCChHHHHHHhccCCC--------CChhh
Q 047840 77 SLVHKMGTARALFDKSPD-------R-----------DVVTWTTMVDGYGKMGDFENARELFEKMPE--------RNAVS 130 (445)
Q Consensus 77 ~~~g~~~~a~~~~~~~~~-------~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~ 130 (445)
-+.+.+++|.+.+..-.+ | |...-+..++++++.|.+.++..+++++.. -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 367889998888753221 1 222234567888999999999999998864 27778
Q ss_pred HHHHHHHHHhc--------CC-------HhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHccC--ChhHHHHHHH
Q 047840 131 WSAIMAAYSRI--------SD-------FKEVLSLFRQMQEV------GMKPNESGLVSVLTACAHLG--AITQGLWVHS 187 (445)
Q Consensus 131 ~~~l~~~~~~~--------~~-------~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~ 187 (445)
|+.++-.+.+. .. ++.++-...++... .+-|....+..++....-.. ...--.++++
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88754433322 11 22233333333221 23344444444443332211 1122223333
Q ss_pred HHHHcCCCCchh-hhhHHHHHHHccCChHHHHHHhhcCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 188 YAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFEGIS--------NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 188 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
.....-+.|+-. +...|...+.. +.+++..+-+.+. +.=+.++..++....+.++...|-..+.-+..-
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333333321 22223333322 2222222222111 112234444455555555555554444433321
Q ss_pred CC------------------------------------------CCCHH-HHHHHHHH---hhcCCc-HHHHHHHHHHhH
Q 047840 259 GT------------------------------------------QPTET-TFVAVLTT---CTHAKM-VRDGLNLFENMS 291 (445)
Q Consensus 259 ~~------------------------------------------~p~~~-~~~~l~~~---~~~~~~-~~~a~~~~~~~~ 291 (445)
.. ..|.. ....++.+ +-+.|. -++|..+++.+.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 10 00111 11111111 233344 667777777776
Q ss_pred HhhCCCCChhHHHHHH----HHHHh---cCChHHHHHHHHHHhcCCCCCC----HHHHHHHHHH--HHHcCChHHHHHHH
Q 047840 292 AVYGVEPQLEHYACVV----DLLAR---AGMVEEAEKFIEEKMGGLGGGD----ANVWGALLSA--CRIYGKIEVGNRVW 358 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~a~~~~ 358 (445)
+- -+-|..+-|.+. ..|.. ...+.+-..+-+-+.+.|++|- ...-|.|.+| +...|++.++.-.-
T Consensus 408 ~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys 485 (549)
T PF07079_consen 408 QF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYS 485 (549)
T ss_pred Hh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 42 122333333222 22322 2344555555555566687763 3455666655 46789999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 359 RKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..+.+..| ++.+|..++-+.....++++|+.++..+.
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999 78999999999999999999999998654
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.02 E-value=0.00034 Score=55.99 Aligned_cols=127 Identities=11% Similarity=0.155 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+.... .+.+...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 444444555555555555555555544322211 233444444455555555555555554432 1112333333444
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
++...|+...+..-++... ..+++|.++++++.+.+|++ +..++..+...|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 4444444333332222111 11567777888887777765 444444444333
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.00 E-value=2.2e-05 Score=51.20 Aligned_cols=58 Identities=16% Similarity=-0.000 Sum_probs=53.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...+...|++++|...|+++++..|.++..+..++.++...|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999998754
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=3.9e-05 Score=64.01 Aligned_cols=88 Identities=16% Similarity=-0.064 Sum_probs=81.5
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHH
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 388 (445)
-+.+.+++.+|+..|.+.+... +.|++.|..-..+|.+.|.++.|++-.+..+..+|....+|..|+.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3567899999999999999877 778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047840 389 NKVRKLISE 397 (445)
Q Consensus 389 ~~~~~~m~~ 397 (445)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887654
No 166
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.00 E-value=0.00025 Score=52.08 Aligned_cols=90 Identities=16% Similarity=-0.008 Sum_probs=65.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---DFSTHVLSYNIYK 380 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~ 380 (445)
+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34456677888888888888877775443 345666777888888888888888888877676 5555566677788
Q ss_pred HcCChHHHHHHHHHH
Q 047840 381 EAGWDMEANKVRKLI 395 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m 395 (445)
..|++++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888865443
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.99 E-value=0.00016 Score=57.68 Aligned_cols=97 Identities=12% Similarity=-0.175 Sum_probs=77.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
....+..+...+...|++++|...|++.......+ ...++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777778888999999999999987553222 2357888999999999999999999999999988888888888
Q ss_pred HHHH-------HcCChHHHHHHHHHH
Q 047840 377 NIYK-------EAGWDMEANKVRKLI 395 (445)
Q Consensus 377 ~~~~-------~~g~~~~A~~~~~~m 395 (445)
.++. +.|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 888888777666554
No 168
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.95 E-value=4.5e-05 Score=50.40 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=58.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 366 (445)
++..|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.++++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45678888889999999999999999988877 667888999999999999 79999999999998877
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.94 E-value=3.4e-05 Score=53.32 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
|+++.|+.+++++.......|+...+-.+..+|.+.|++++|..+++. .+.+ +.+......+..++...|++++|++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 455555555555554311111223333345555555555555555554 2112 12223333335555555555555555
Q ss_pred HHH
Q 047840 358 WRK 360 (445)
Q Consensus 358 ~~~ 360 (445)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=3e-05 Score=51.10 Aligned_cols=54 Identities=13% Similarity=0.144 Sum_probs=21.9
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.|++++|.++|+++.... +.+...+..+..+|.+.|++++|.++++++....|+
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344444444444443333 223334444444444444444444444444444443
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.90 E-value=0.00075 Score=58.83 Aligned_cols=204 Identities=11% Similarity=0.175 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEV----GMKPN-ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
|......|...|++++|.+.|.+.... +-+.+ ...|......+ +..++++|...+++..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~--------------- 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI--------------- 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH---------------
Confidence 444566677777777777777665331 10000 11222222333 2235555555554443
Q ss_pred HHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhhcCC
Q 047840 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN-GDAKKSLELFDRMVKS----GTQPT--ETTFVAVLTTCTHAK 278 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~ 278 (445)
..|...|++..|-.++ ..+...|... |++++|++.|++..+. | .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 4456666666665543 3345555555 6777777777665432 2 111 223455556677777
Q ss_pred cHHHHHHHHHHhHHhhCCCC-----Chh-HHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCC--CHHHHHHHHHHHHH-
Q 047840 279 MVRDGLNLFENMSAVYGVEP-----QLE-HYACVVDLLARAGMVEEAEKFIEEKMGGL--GGG--DANVWGALLSACRI- 347 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~- 347 (445)
++++|.++|+++... .... +.. .+-..+-++...|++..|.+.+++..... +.. .......|+.++-.
T Consensus 170 ~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp -HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 788888777777653 1111 111 12222334555677777777777765432 212 23455666666643
Q ss_pred -cCChHHHHHHHHHHHH
Q 047840 348 -YGKIEVGNRVWRKLAE 363 (445)
Q Consensus 348 -~g~~~~a~~~~~~~~~ 363 (445)
...++.++.-|+.+.+
T Consensus 249 D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISR 265 (282)
T ss_dssp -CCCHHHHCHHHTTSS-
T ss_pred CHHHHHHHHHHHcccCc
Confidence 2234444444444433
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.88 E-value=0.00029 Score=54.00 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=77.4
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
.-+...|++++|..+|+-+.-.+ +-+..-|..|..++-..+++++|+..|..+...+++||.+....+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33457899999999999887666 55677788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047840 388 ANKVRKLISE 397 (445)
Q Consensus 388 A~~~~~~m~~ 397 (445)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999988776
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.0022 Score=55.90 Aligned_cols=146 Identities=15% Similarity=0.097 Sum_probs=89.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC-CcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHH
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA-KMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDL 309 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 309 (445)
.+..|...|++..|-+.+.+ +...|... |+++.|.+.|++....+..... ..++..+...
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 34556666666665555544 44567777 8999999999888765432222 3455677888
Q ss_pred HHhcCChHHHHHHHHHHhcCCCC-----CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--C---chhHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGG-----GDAN-VWGALLSACRIYGKIEVGNRVWRKLAEMGIT--D---FSTHVLSYNI 378 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~---~~~~~~l~~~ 378 (445)
+.+.|++++|.++|+++...... .+.. .+...+-++...|+...|.+.+++.....|. + ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 99999999999999998654322 1222 2334444667789999999999999988875 2 2233345555
Q ss_pred HHHc--CChHHHHHHHHHH
Q 047840 379 YKEA--GWDMEANKVRKLI 395 (445)
Q Consensus 379 ~~~~--g~~~~A~~~~~~m 395 (445)
+-.. ..+.+|..-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 5442 3445555555433
No 174
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.86 E-value=2.4e-05 Score=42.10 Aligned_cols=29 Identities=28% Similarity=0.795 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVG 158 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 158 (445)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777776655
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.85 E-value=0.0017 Score=61.23 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..|.++.-.....|++++|...+++..+.+ |+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 444444444444555555555555555443 3455555555555555555555555555555555544
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.81 E-value=0.00034 Score=60.72 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=101.6
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
.+|..++....+.+..+.|..+|.++.+. -..+..+|-..+..-.. .++.+.|.++|+..++.- +.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 46888888888999999999999999853 23344555544444233 567777999999988763 678899999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+...++.+.|..+|++.+..-+.+ ...|...+..-.+.|+.+.+..+.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875543 357888899999999999999999988764
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=4.8e-05 Score=50.12 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=48.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|++.|+++.+..|.+..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999987754
No 178
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.80 E-value=0.00033 Score=63.28 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA 304 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (445)
+..++++.|...|..+.++.+++.=...|+-||.++++.+|..+.+.|++..|.++...|..+ +...+..|+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~ 177 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQA 177 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHH
Confidence 334555555555555555555555555556666666666666666666666665555555544 3333434433
No 179
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.037 Score=52.64 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+... .+.-|.-
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~P 749 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLP 749 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchh
Confidence 3445556666677777888899988877775 5888888888889999999998888776652 2556788
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
+..+|.+.|+.++|..++-+.-. +.....+|.+.|++.+|.++--+
T Consensus 750 FVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 750 FVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88999999999999888765421 22677889999999998875443
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.78 E-value=0.00049 Score=48.62 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCchhhhh
Q 047840 132 SAIMAAYSRISDFKEVLSLFRQMQEVGM-KPNESGLVSVLTACAHLG--------AITQGLWVHSYAKRYHLEKNVILAT 202 (445)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (445)
...|..+...+++.....+|+.+...|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999877654 3445678999999999999999999
Q ss_pred HHHHHHHc
Q 047840 203 AVVDMYSK 210 (445)
Q Consensus 203 ~l~~~~~~ 210 (445)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99888765
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.76 E-value=4.4e-05 Score=41.06 Aligned_cols=29 Identities=38% Similarity=0.702 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 182
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.75 E-value=0.00022 Score=47.71 Aligned_cols=60 Identities=17% Similarity=0.128 Sum_probs=31.7
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.|.+.+++++|.++++.++..+ |.++..|......+...|++++|.+.|++.++..|+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3445555555555555555444 34445555555555555555555555555555555443
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.75 E-value=0.00075 Score=51.51 Aligned_cols=95 Identities=6% Similarity=-0.057 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
.-.+..-+...|++++|..+|+.+..- .| +..-|-.|.-++-..|++++|+..|....... +.|+..+-.+..++
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~---Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY---DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334445566789999999999888753 44 45566778888888899999999999888777 67888888889999
Q ss_pred HHcCChHHHHHHHHHHHHhC
Q 047840 346 RIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~ 365 (445)
...|+.+.|.+.|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999888754
No 184
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.74 E-value=0.00017 Score=48.21 Aligned_cols=58 Identities=14% Similarity=-0.065 Sum_probs=53.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...|.+.+++++|.+.+++++..+|+++..+...+.++.+.|++.+|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999999999999999999999999999999988654
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.73 E-value=0.0021 Score=49.95 Aligned_cols=155 Identities=8% Similarity=-0.025 Sum_probs=114.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
+..+.=+++...+-..+-.. ..|+...-..|..++...|+..+|...|.+.... -+.-|......+.++....+++.
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHH
Confidence 33444456655544433333 4678887788899999999999999999999863 34556777788889999999999
Q ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 318 EAEKFIEEKMGGLG-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 318 ~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.|...++.+.+.+. ...+.+...+.+.+...|+...|...|+.++...|. +..-......+.++|+.++|..-+..+.
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999876541 112344566788899999999999999999997775 3344456677888998888776554443
No 186
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.71 E-value=0.0005 Score=62.16 Aligned_cols=116 Identities=11% Similarity=0.113 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC-C-----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE-R-----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 169 (445)
+......+++.+....+.+++..++.+... | -..|..++++.|.+.|..+.++.++..=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 445556666666677777778777777654 1 2345568888888888888888888888888888888888888
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc
Q 047840 170 LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC 211 (445)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (445)
+..+.+.|++..|.++...|...+...++.++.-.+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888777666666655555554444
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.70 E-value=0.0014 Score=52.27 Aligned_cols=101 Identities=8% Similarity=0.004 Sum_probs=54.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
.+..+...+...|++++|...|+.......-++ ...++..+..++...|++++|...++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 344444455556666666666666653311111 12355566666666666666666666665443 3334445555555
Q ss_pred HH-------HcCChH-------HHHHHHHHHHHhCCC
Q 047840 345 CR-------IYGKIE-------VGNRVWRKLAEMGIT 367 (445)
Q Consensus 345 ~~-------~~g~~~-------~a~~~~~~~~~~~~~ 367 (445)
+. ..|+++ +|...+++.....|+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 54 566655 445555556666665
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.0031 Score=59.52 Aligned_cols=136 Identities=12% Similarity=0.057 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHHHHhhc--C---CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 047840 259 GTQPTETTFVAVLTTCTH--A---KMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARA--------GMVEEAEKFIE 324 (445)
Q Consensus 259 ~~~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 324 (445)
+.+.+...|...+.+... . ++...|..+|+++.+. .|+ ...|..+..++... ++...+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 456677888888887432 2 3477899999999964 676 34444444433322 12334445555
Q ss_pred HHhcC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 325 EKMGG-LGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 325 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.... ..+.++..+..+.-.....|++++|...+++++++.| +...|..++.++...|+.++|.+.+++....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44332 2345667888887777788999999999999999998 5778999999999999999999999887654
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.016 Score=45.28 Aligned_cols=134 Identities=8% Similarity=0.040 Sum_probs=91.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
++..--.|..++...|+..+|...|.+....-..-|......+.++....++...|...++.+.+...-.-++.+...+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 44445567778888888888888888877655556777777788888888888888888888775421111244455667
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.+|...|...+|+.-|+...+.- |+...-......+.+.|+.+++..-+..+.+
T Consensus 168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 78888888888888888877553 5555544455566777777666655544443
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.68 E-value=0.00083 Score=47.52 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=44.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhcCC--------cHHHHHHHHHHhHHhhCCCCChhHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGT-QPTETTFVAVLTTCTHAK--------MVRDGLNLFENMSAVYGVEPQLEHYA 304 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (445)
..|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+..+.. ++-..+.+|+.|... +++|+..+|+
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHH
Confidence 344455555777777777777777777 677777777776654321 233344555555544 5555555555
Q ss_pred HHHHHHH
Q 047840 305 CVVDLLA 311 (445)
Q Consensus 305 ~l~~~~~ 311 (445)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555443
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.66 E-value=0.0015 Score=47.95 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CchhhhhHHHHHH
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE--KNVILATAVVDMY 208 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 208 (445)
.+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++........ .+..+...+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 455677788999999999999888776554 345666777888888888888888887765211 1222333334456
Q ss_pred HccCChHHHHHHhhcCC
Q 047840 209 SKCGHVHSALSVFEGIS 225 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~ 225 (445)
...|+.++|.+.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66677777776664433
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.63 E-value=0.03 Score=47.41 Aligned_cols=65 Identities=8% Similarity=0.020 Sum_probs=40.9
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHccCChhHHHHHHHHHHHcC
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE-SGL---VSVLTACAHLGAITQGLWVHSYAKRYH 193 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (445)
+...+-.....+...|++++|.+.|+++... .|+. ..- -.++.++.+.+++++|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3333334455566778888888888887764 2332 221 345566777788888888887777653
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.065 Score=50.68 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=37.5
Q ss_pred cCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC-----ChhhHHHHHHHHHhcCCHhHHHHHHH
Q 047840 79 VHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER-----NAVSWSAIMAAYSRISDFKEVLSLFR 152 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 152 (445)
-|.+++|+++|-.+..+|. -|..+.+.|++-...++++.-... -..+|+.+...+.....|++|.+.|.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777766553 244455566666666665543221 12345555555555555555555443
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.0058 Score=50.33 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHH---
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV--- 306 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 306 (445)
...+.++..+.-.|.+.-.+.++++.++...+.++.....+++.-.+.|+.+.|...|++..+. .-+.+..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3456777888888999999999999999877778888888999999999999999999988765 333444444333
Q ss_pred --HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 307 --VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 307 --~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
...|.-.+++..|...+.++.... +.|+...|.-.-+..-.|+...|++.++.+++..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334556788999999999887766 56777666666666667899999999999999888643
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.55 E-value=0.002 Score=54.92 Aligned_cols=85 Identities=11% Similarity=-0.054 Sum_probs=40.2
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHcCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEAGW 384 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 384 (445)
.+.|++++|...|+.+++.. +-+ +..+-.+..+|...|++++|...|+.+++..|++ +.++..++.++...|+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~ 232 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 232 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCC
Confidence 33455555555555554332 111 1234444555555555555555555555544442 2233334444555555
Q ss_pred hHHHHHHHHHHH
Q 047840 385 DMEANKVRKLIS 396 (445)
Q Consensus 385 ~~~A~~~~~~m~ 396 (445)
+++|..+++.+.
T Consensus 233 ~~~A~~~~~~vi 244 (263)
T PRK10803 233 TAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.50 E-value=0.012 Score=49.74 Aligned_cols=57 Identities=12% Similarity=-0.029 Sum_probs=37.7
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhH---HHHHHHHHhcCCHHHHHHHhccCCC
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV---SSLLEFYSLVHKMGTARALFDKSPD 94 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~ 94 (445)
....+...|+++ .|...|+.+...-+.+ .... -.++.++.+.++++.|...|++..+
T Consensus 38 ~A~~~~~~g~y~-~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 38 TAQQKLQDGNWK-QAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHCCCHH-HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344456678888 8888888887743222 2222 3455777788888888888877654
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.48 E-value=0.0023 Score=49.62 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH-----hcCCccCCc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS-----ETGMKKKPG 405 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~ 405 (445)
.+...++..+...|++++|.+.+++++..+|-+...+..++.+|...|+..+|.+.|+++. +.|+.|.+.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3456677788899999999999999999999999999999999999999999999998885 458877543
No 198
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.48 E-value=0.0025 Score=55.83 Aligned_cols=132 Identities=9% Similarity=-0.002 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHH---hHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHh----cCC-CCCCH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFEN---MSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKM----GGL-GGGDA 335 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~ 335 (445)
..|..|...|.-.|+++.|+...+. +.+.+|-+. ....+..+..++.-.|+++.|.+.|+... +.| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555556666777777765543 222233222 23455667777777788888877776532 222 12233
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEM------GITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+.-.|..+|.-..++++|+.++.+-+.. ......++..|+.+|...|..+.|+.+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44556677777777778888777765441 12245677778888888888888877655544
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.45 E-value=0.021 Score=53.30 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=14.4
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~ 363 (445)
++|.+.|+-.+|.++++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 455666777777777777655
No 200
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0037 Score=54.94 Aligned_cols=97 Identities=8% Similarity=-0.041 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
..++..+.-+|.+.+++.+|+......+..+ ++|+...-.-..+|...|+++.|+..|+++++..|.|-.+-..++.+-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3466778888999999999999999999888 889999999999999999999999999999999999988888888887
Q ss_pred HHcCChHHH-HHHHHHHHh
Q 047840 380 KEAGWDMEA-NKVRKLISE 397 (445)
Q Consensus 380 ~~~g~~~~A-~~~~~~m~~ 397 (445)
.+.....+. .++|..|-.
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 777776665 558888853
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.017 Score=48.94 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHhcCCCCCCHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA---GMVEEAEKFIEEKMGGLGGGDANV 337 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 337 (445)
+-|...|..|...|...|+.+.|..-|....+.. .++...+..+..++... ....++..+|++++... +-|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence 3478899999999999999999999999998642 44566666777665543 24578999999998877 778888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
...|...+...|++.+|...|+.|++..|++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 88888999999999999999999999888754
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.027 Score=46.57 Aligned_cols=128 Identities=11% Similarity=0.065 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhH-----HH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATA-----VV 205 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 205 (445)
-+.++..+.-.|.+.--+..+.+.++...+.++.....+.+.-.+.||.+.|..+|++..+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3456666677778888888888888766566777778888888888888888888887766443334333333 33
Q ss_pred HHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 206 DMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
..|.-.+++..|...|.++... |+..-|.-.-+..-.|+...|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456667777888877766653 4445555444555567788888888888775
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.39 E-value=0.0057 Score=52.23 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCCHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGL--GGGDANVW 338 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~ 338 (445)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.. -+.....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 34544444445668888888888888865 2332 455667788888899999999888887542 12234556
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..++..+...|+.++|...|+++++..|.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6667778888999999999999998888755
No 204
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.039 Score=48.78 Aligned_cols=54 Identities=11% Similarity=-0.055 Sum_probs=23.8
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK 227 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 227 (445)
+...|+.++|.++--..++.. ..+......-..++--.++.+.|...|++..+.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence 345556666665555555443 111111111112233345556666666555543
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.36 E-value=0.0021 Score=51.60 Aligned_cols=88 Identities=6% Similarity=0.146 Sum_probs=59.2
Q ss_pred CChhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CChhHHHH
Q 047840 126 RNAVSWSAIMAAYSR-----ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHL----------------GAITQGLW 184 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 184 (445)
++-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455555555555543 355666666667777777777777777777765431 14456778
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888877776654
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.35 E-value=0.069 Score=47.64 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=98.7
Q ss_pred HHHHHHHccCChHHHHHHhhcCCCC-------ChhhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISNK-------DAGAWNAMISGVAM---NGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
.++-+|....+++...++++.+... ....-....-++.+ .|+.++|++++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555567777777777777766553 11122233445555 7888888888888655556677777777666
Q ss_pred Hhhc---------CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh-H---HHHHHH---HH-HhcCC---CC
Q 047840 273 TCTH---------AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV-E---EAEKFI---EE-KMGGL---GG 332 (445)
Q Consensus 273 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~---~A~~~~---~~-~~~~~---~~ 332 (445)
.|-. ....++|+..|.+.- .+.|+..+--.++..+.-.|.. + +..++- .. +.+.| -.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 224677777777655 3455544333333333334432 1 222222 11 11222 23
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.|-..+.+++.++.-.|+.++|.+.++++....|+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4556677888999999999999999999999887643
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.35 E-value=0.0014 Score=58.82 Aligned_cols=98 Identities=10% Similarity=-0.084 Sum_probs=54.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC-H---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD-A---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
+...++.+..+|...|++++|+..|++.++.+ |+ . .+|..+..+|...|+.++|+..++++++..+. .|..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 35556666666777777777777776665443 33 2 34666666777777777777777777665321 1211
Q ss_pred HHH--HHHHcCChHHHHHHHHHHHhcCCc
Q 047840 375 SYN--IYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 375 l~~--~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
+.. .+....+..+..++++.+.+.|..
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 111 122233444556666666665553
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.34 E-value=0.0095 Score=49.07 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=38.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCChHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDF---STHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 390 (445)
+...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 56778899999999999999999888744 345678888999999885543
No 209
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.061 Score=50.84 Aligned_cols=305 Identities=15% Similarity=0.147 Sum_probs=177.7
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC-CCh------------hhHHHHHHHHHcCCChHHHHHHhccCCCCCh
Q 047840 62 FGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD-RDV------------VTWTTMVDGYGKMGDFENARELFEKMPERNA 128 (445)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 128 (445)
-.|.+..|..+.......-.++-|+..|-+... +.. ..-.+-+.+ --|.+++|++++-.+..+|.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh
Confidence 367888898888888777788888888765432 111 111112222 24889999999988877654
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEV-GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (445)
.+..+.+.|+|-.+.++++.--.. +-..-...++.+...++....++.|.++|..-... ...+.+
T Consensus 766 -----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ec 831 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIEC 831 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHH
Confidence 356677888988888877542110 00112356788888888888888888888765322 235677
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (445)
+.+..++++-+.+.+.+++ +......+.+++...|.-++|.+.+-+-. .|. ..+..|...++|.+|.++-
T Consensus 832 ly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 832 LYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666655 44456667778888888888877664331 121 2355677777777777665
Q ss_pred HHhHHhhCCCCChhHH--------------HHHHHHHHhcCChHHHHHHHHHHhcC----CCCCCHH----HHHHHH-HH
Q 047840 288 ENMSAVYGVEPQLEHY--------------ACVVDLLARAGMVEEAEKFIEEKMGG----LGGGDAN----VWGALL-SA 344 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~----~~~~l~-~~ 344 (445)
+...- |...+. .--|..+.++|++-+|.+++.+|.+. +.++-.. +..+++ .-
T Consensus 902 q~~~l-----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~ 976 (1189)
T KOG2041|consen 902 QRFQL-----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVEN 976 (1189)
T ss_pred Hhccc-----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 54431 222221 11244456677777777777766442 3232211 111211 00
Q ss_pred H----------HHcCChHHHHHHHHHHHHhCC--------C--CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 345 C----------RIYGKIEVGNRVWRKLAEMGI--------T--DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 345 ~----------~~~g~~~~a~~~~~~~~~~~~--------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+ -..|..++|..+++...-... . ....+..|+.-....|..+.|...--.+++
T Consensus 977 h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~D 1049 (1189)
T KOG2041|consen 977 HRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSD 1049 (1189)
T ss_pred HHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhcc
Confidence 0 123555566554444322110 0 122333455556667888888876555553
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.30 E-value=0.00063 Score=40.00 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
.+|..+..+|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457788899999999999999999999999998888877654
No 211
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.12 Score=45.57 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
.+.-+.-+...|+...|.++-++. + -|+..-|...+.+++..++|++-..+-.. +-++..|..++.+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACL 248 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHH
Confidence 334445555666666666554443 1 25666666667777777777655554321 123456666777777
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
+.|+..+|..++.++ + +..-+..|.+.|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 777777777666653 1 13345556666666666544
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.13 Score=45.43 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
..+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++-.++-.. +.++..|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHH
Confidence 3455666777778888888777765553 48888999999999999999988876543 234577999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+|.+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+.+
T Consensus 246 ~~~~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999999888872 23567788999999999988655443
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.23 E-value=0.0055 Score=49.27 Aligned_cols=104 Identities=14% Similarity=0.065 Sum_probs=65.5
Q ss_pred CCChhhHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 047840 226 NKDAGAWNAMISGVAM-----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL 300 (445)
Q Consensus 226 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 300 (445)
..+..+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3456666666666654 35666666777788888888888888888877665 2211 011111111
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
.-| -.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 113 -------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 -------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 1234567888888888888888888888888875544
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.22 E-value=0.0011 Score=44.94 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCC---CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEM----GIT---DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+++.+...|...|++++|+..|+++++. +++ -..++..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666667777777777777766652 221 13455566777777777777777666554
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.21 E-value=0.13 Score=45.21 Aligned_cols=284 Identities=15% Similarity=0.103 Sum_probs=178.5
Q ss_pred HHHHHHHHH--cCCChHHHHHHhccCC---CCChhhHHHHHH--HHHhcCCHhHHHHHHHHHHHcCCCCCHHHH----HH
Q 047840 100 WTTMVDGYG--KMGDFENARELFEKMP---ERNAVSWSAIMA--AYSRISDFKEVLSLFRQMQEVGMKPNESGL----VS 168 (445)
Q Consensus 100 ~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~ 168 (445)
|..|-.+++ -.|+-..|.+.-.+-. ..|....-.++. +-.-.|+++.|.+-|+.|.. |+.|- ..
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHH
Confidence 444444443 3566666766655443 234443333433 34457899999999998875 23332 23
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC-----CChh--hHHHHHHHH--
Q 047840 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-----KDAG--AWNAMISGV-- 239 (445)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~-- 239 (445)
|.-...+.|+.+.|.++-+..-..- +.-.....+.+...|..|+|+.|+++++.-.. ++.. .-..|+.+-
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 3333457788888888887776553 33456778888889999999999999875432 3322 111222211
Q ss_pred -HhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 240 -AMNGDAKKSLELFDRMVKSGTQPTETT-FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 240 -~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
.-..+...|...-.+..+ ..||..- -..-..++.+.|+..++-.+++.+-+. .|.+..+...+ +.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcH
Confidence 112345556655554444 4555432 223345688999999999999999865 67766554333 44556543
Q ss_pred HHHHHHHHH---hcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-CChHHHHHHHH
Q 047840 318 EAEKFIEEK---MGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRK 393 (445)
Q Consensus 318 ~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 393 (445)
..-+++. .+.. +.+......+..+-...|++..|..--+.+.+..|. ..+|..|++.-... |+-.++...+.
T Consensus 312 --~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 312 --LDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred --HHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHH
Confidence 2222222 2112 456677888888889999999999988888888886 45788888876555 99999988887
Q ss_pred HHHhcCC
Q 047840 394 LISETGM 400 (445)
Q Consensus 394 ~m~~~~~ 400 (445)
+..+.--
T Consensus 388 qav~APr 394 (531)
T COG3898 388 QAVKAPR 394 (531)
T ss_pred HHhcCCC
Confidence 7665433
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.21 E-value=0.00037 Score=38.13 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=30.3
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
|+++++..|+++.+|..++.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.18 E-value=0.16 Score=45.61 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
..|...+.+..+..-++.|..+|-++.+. + +.+++..+++++..++ .|+..-|..+|+.-...- +.+..--+..+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45666777777777888999999999877 5 6678888899888775 578888999988755433 333444455666
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
-+...++-+.|..+|+..++.-.. -..+|..++.--..-|+...+..+-++|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 677788888888888866652222 24467777776677777766665555554
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.17 E-value=0.011 Score=51.93 Aligned_cols=129 Identities=10% Similarity=0.043 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHH----HcCCC-CchhhhhHHHHHHHccCChHHHHHHhhcCC-------CC--Ch
Q 047840 164 SGLVSVLTACAHLGAITQGLWVHSYAK----RYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGIS-------NK--DA 229 (445)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~--~~ 229 (445)
..|..|.+.|.-.|++++|+...+.-+ +.|.. .....+..+.+++.-.|+++.|.+.|+... .+ ..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777888998887665432 33322 123566778888888899998888886532 22 23
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKS----G-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
.+...|...|.-..++++|+.++.+-..- + ..-....+.+|..++...|..++|..+.+...+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 35556777777777888888877653321 1 122456777888888888888888877766554
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.09 E-value=0.16 Score=47.74 Aligned_cols=109 Identities=11% Similarity=0.128 Sum_probs=69.4
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
...|-.+-+.++-+++...+..+...+...+.+...+.-|-++|.+|-+. ..++......++|.+|+.+-+
T Consensus 727 ~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred hcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhh
Confidence 34444555555555555556666666666666677777888888877432 245667778888888888877
Q ss_pred HhHHhhCCCCChhH-----------HHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 289 NMSAVYGVEPQLEH-----------YACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 289 ~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
..- .+.|++.. +.-.-.+|.++|+-.+|..+++++...
T Consensus 798 ~hP---e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 798 KHP---EFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hCc---cccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 665 33444321 222334677788888888888877443
No 220
>PRK11906 transcriptional regulator; Provisional
Probab=96.91 E-value=0.038 Score=50.12 Aligned_cols=116 Identities=9% Similarity=0.016 Sum_probs=77.6
Q ss_pred cHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHh---------cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 279 MVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLAR---------AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++-++..+.+ +.|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 345666677777633344554 3334433333221 223456666777777766 67777777777777777
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
++++.|...|+++..+.|+.+.++...+....-.|+.++|.+.+++.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77888888888888888888878888888888888888888877763
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.91 E-value=0.017 Score=43.02 Aligned_cols=50 Identities=16% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHH
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSAC 345 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 345 (445)
..|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555554433 4444555555555443
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.83 E-value=0.21 Score=41.12 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMK--PNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (445)
.....+...|++++|.+.|+.+...-.. --......++.++.+.|+++.|...+++..+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777777777777777654211 12234455666677777777777777776654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.82 E-value=0.02 Score=51.72 Aligned_cols=99 Identities=13% Similarity=0.066 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV 337 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 337 (445)
.+...++.+..+|.+.|++++|...|++..+. .|+. ..|..+..+|...|++++|+..+++.++.+ .+ .
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~ 145 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---K 145 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---h
Confidence 35667888888888889999999999888854 5663 347888888888999999999998887642 11 1
Q ss_pred HHHHHH--HHHHcCChHHHHHHHHHHHHhCCC
Q 047840 338 WGALLS--ACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 338 ~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
|..+.. .+....+.++..++++.+...+-.
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 211111 111223344666667766665554
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.81 E-value=0.021 Score=42.54 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=48.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 259 GTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 259 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
...|+..+..+++.+|+..+++..|.++.+...+.++++.+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999899999999875543
No 225
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.80 E-value=0.025 Score=41.28 Aligned_cols=89 Identities=20% Similarity=0.149 Sum_probs=49.2
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCC---chhHHHHHHHHHHcCCh
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMG-ITD---FSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~g~~ 385 (445)
+...|+++.|++.|.+.+..- +.....||.-.+++.-.|+.++|++-+++++++. +.. ...|..-+..|...|+.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 445566666666666555433 3455566666666666666666666666666632 221 11233444455666666
Q ss_pred HHHHHHHHHHHhcC
Q 047840 386 MEANKVRKLISETG 399 (445)
Q Consensus 386 ~~A~~~~~~m~~~~ 399 (445)
+.|..-|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666665555544
No 226
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.71 E-value=0.06 Score=41.63 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
....++..+...|++++|..+++.+.... |.|...|..++.+|...|+...|.+.|+++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45567777888999999999999988777 77888999999999999999999999988765
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.63 E-value=0.0036 Score=42.34 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LG-GGD-ANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
..+++.+...|...|++++|+..|++.++. |- .|+ ..++..+...+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345677777788888888888887776532 10 122 45677788888888888888888888765
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.56 E-value=0.19 Score=37.01 Aligned_cols=140 Identities=18% Similarity=0.249 Sum_probs=75.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
.-.|..++..++..+.... .+..-+|-++--....-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3457777777777777654 234444444444433344444455555554322221 23444444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
..-+-.+ + .+.......+..+...|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++.+++++.-+.|
T Consensus 76 i~C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 76 IECYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 4444333 2 3344455566777778888888888888776555567778888888888888888888888888877
Q ss_pred Cc
Q 047840 400 MK 401 (445)
Q Consensus 400 ~~ 401 (445)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 64
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.13 Score=44.36 Aligned_cols=156 Identities=12% Similarity=-0.015 Sum_probs=99.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHH----HHHHHhcCCh
Q 047840 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACV----VDLLARAGMV 316 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~ 316 (445)
..|+..+|-..++++.+. .+.|...+...=.+|...|+...-...++++.. ...|+...|..+ .-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 456777777777777665 344555666666677777777777777777764 335555444332 3344567888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CchhHHHHHHHHHHcCChHHHHHHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT----DFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
++|++.-++..+.+ +.|...-.++...+-..|++.++.++..+-...-.. -..-|-..+-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888877766 667777777777777778888887776665442111 0112334555666677888888877
Q ss_pred HHHHhcCC
Q 047840 393 KLISETGM 400 (445)
Q Consensus 393 ~~m~~~~~ 400 (445)
++-.-..+
T Consensus 271 D~ei~k~l 278 (491)
T KOG2610|consen 271 DREIWKRL 278 (491)
T ss_pred HHHHHHHh
Confidence 76543333
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.093 Score=44.06 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CchhHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGG---DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---DFSTHVLS 375 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l 375 (445)
.|+.-++.| ..|++..|..-|...++.. +. .+..+-.|..++...|+++.|..+|..+.+..|. -+..+.-+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 344444333 4455666666666655542 11 1122333566666666666666666666664443 33445556
Q ss_pred HHHHHHcCChHHHHHHHHHHHh
Q 047840 376 YNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 376 ~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+..+.|+.++|...|+.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=96.45 E-value=0.14 Score=39.63 Aligned_cols=88 Identities=7% Similarity=-0.059 Sum_probs=70.4
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
-+...|++++|..+|.-+..- + .-+..-+..|..++-..+++++|...|......+ ..|+...-....++...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 355789999999999988753 2 2345566788888888999999999998876555 456666677888999999999
Q ss_pred HHHHHHHHHHH
Q 047840 353 VGNRVWRKLAE 363 (445)
Q Consensus 353 ~a~~~~~~~~~ 363 (445)
.|...|+.+++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999999888
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.41 E-value=0.62 Score=41.77 Aligned_cols=166 Identities=8% Similarity=-0.048 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhc---CCcHHHHHHHHHHhHHhhCCCCChhHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG---TQPTETTFVAVLTTCTH---AKMVRDGLNLFENMSAVYGVEPQLEHYA 304 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 304 (445)
+...++-+|....+++..+++.+.+.... +.-+...--...-++.+ .|+.++|.+++..+... .-.+++.++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 34455667999999999999999997751 11122222233445556 89999999999995544 5677888888
Q ss_pred HHHHHHHh---------cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH----HHHHHH---HH-HHHhC--
Q 047840 305 CVVDLLAR---------AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE----VGNRVW---RK-LAEMG-- 365 (445)
Q Consensus 305 ~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~---~~-~~~~~-- 365 (445)
.+...|.. ....++|...|.+.-+.. ||...--.++..+...|... +..++- .. +.+.+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88877643 224788999998876443 55544333333333344322 222222 11 11222
Q ss_pred -C-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 366 -I-TDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 366 -~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
+ .+...+..++.+..-.|+.+.|.+..++|.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 244455678889999999999999999998763
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.40 E-value=0.13 Score=38.77 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 047840 351 IEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~~ 369 (445)
...|..-|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 3456666666666666543
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=1.1 Score=43.27 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
+.+--+..+...|+..+|.++-.+.+ -||-..|..-+.+++..++|++-+++-+..+ .+.-|..+..+|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-------SPIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-------CCCCchhHHHHH
Confidence 44445566677788888887766553 4677888888888888888876655543332 256677788888
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 359 (445)
.+.|+.++|.+++.+. + +.. -...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv---~--~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV---G--GLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhcc---C--ChH----HHHHHHHHhccHHHHHHHHH
Confidence 8999999998888776 2 222 45677788888877765543
No 235
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.24 E-value=0.19 Score=40.50 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=88.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH--HHHhcCChHH
Q 047840 242 NGDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD--LLARAGMVEE 318 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~ 318 (445)
.|-+.-|.--|.+... +.|+ +..||.+.-.+...|+++.|.+.|+...+. .|+- -|..+=+ ++.-.|++.-
T Consensus 78 lGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp~y-~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 78 LGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTY-NYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CCcc-hHHHhccceeeeecCchHh
Confidence 3444444444444443 4555 457788887888999999999999998853 4542 2222222 2334688888
Q ss_pred HHHHHHHHhcCC-CCCCHHHHHHHHHH--------------HHHcC--------------ChHHHHHHHHHHHHhCCCC-
Q 047840 319 AEKFIEEKMGGL-GGGDANVWGALLSA--------------CRIYG--------------KIEVGNRVWRKLAEMGITD- 368 (445)
Q Consensus 319 A~~~~~~~~~~~-~~~~~~~~~~l~~~--------------~~~~g--------------~~~~a~~~~~~~~~~~~~~- 368 (445)
|.+-+...-... -.|-...|.-+... +.... ++ ....+++++.....++
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki-S~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI-SEETLMERLKADATDNT 230 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc-cHHHHHHHHHhhccchH
Confidence 888776665544 12323344433311 11111 11 0112333333322222
Q ss_pred ------chhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 369 ------FSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 369 ------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..+|..++.-+...|+.++|..+|+-.....+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 34788899999999999999999988766544
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.03 Score=49.48 Aligned_cols=63 Identities=8% Similarity=-0.132 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+++.+..++.+.+++..|++...++++.+|+|..+.+.-+.++...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457778889999999999999999999999999999999999999999999999999999764
No 237
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=96.22 E-value=0.2 Score=39.13 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhhhcCCch
Q 047840 16 FCYLDMLDMGFEPNNYTFPPLIKACVILGPLE 47 (445)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 47 (445)
+.++.+.+.+++|+...+..++..+.+.|++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444444555666666666666666665554
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.28 Score=41.75 Aligned_cols=122 Identities=11% Similarity=-0.006 Sum_probs=70.5
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
.....|+..+|..+|+..... .+-+......++.+|...|+.+.|..++..+-..--.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345667777777777777753 122344555677777788888888888777632210111111122233344444443
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+... +++-...+|+|...-..++..+...|+.++|.+.+-.+.+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3322 2344456777777777788888888888887775544443
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.15 E-value=0.64 Score=38.84 Aligned_cols=86 Identities=21% Similarity=0.064 Sum_probs=38.8
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEA 388 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 388 (445)
+...++.+.+...+....... +. ....+..+...+...++.+.+...+.......|.....+..+...+...|.++++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 334445555555554444332 22 2344444444444445555555555555554444333333333333344445555
Q ss_pred HHHHHHHH
Q 047840 389 NKVRKLIS 396 (445)
Q Consensus 389 ~~~~~~m~ 396 (445)
...+....
T Consensus 256 ~~~~~~~~ 263 (291)
T COG0457 256 LEALEKAL 263 (291)
T ss_pred HHHHHHHH
Confidence 54444443
No 240
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.13 E-value=0.2 Score=38.36 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=73.0
Q ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 047840 33 FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112 (445)
Q Consensus 33 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (445)
...++..+...+... ....+++.+...+ ..+...++.++..|++.+ ..+....++. ..+.......+..|.+.+.
T Consensus 10 ~~~vv~~~~~~~~~~-~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 10 VSEVVELFEKRNLLE-ELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHHHhCCcHH-HHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 445666666556666 6666777666655 356666777777776553 3344444442 2234444556666777777
Q ss_pred hHHHHHHhccCCCCChhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 113 FENARELFEKMPERNAVSWSAIMAAYSRI-SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
++++..++.++.. |...+..+... ++++.|.+.+.+- .+...|..++..+..
T Consensus 85 ~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 85 YEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 7777777776643 22233333333 6777777766541 255566666665543
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.10 E-value=0.81 Score=43.17 Aligned_cols=164 Identities=16% Similarity=0.073 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHhhc----CCcHHHHHHHHHHhHHhhCCCCChh
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTE-----TTFVAVLTTCTH----AKMVRDGLNLFENMSAVYGVEPQLE 301 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 301 (445)
...+++...=.|+-+.+++.+.+..+.+ +.-.. -.|..++..++. ..+.+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555677777777776655432 22111 123344433332 45778899999999875 57766
Q ss_pred HHHHH-HHHHHhcCChHHHHHHHHHHhcCC--C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH-HHH
Q 047840 302 HYACV-VDLLARAGMVEEAEKFIEEKMGGL--G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV-LSY 376 (445)
Q Consensus 302 ~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~ 376 (445)
.|... .+.+...|++++|.+.|++..... . +.....+--+...+....++++|.+.|.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 66543 456677899999999999765321 1 122344555666778889999999999999986554444444 345
Q ss_pred HHHHHcCCh-------HHHHHHHHHHHhc
Q 047840 377 NIYKEAGWD-------MEANKVRKLISET 398 (445)
Q Consensus 377 ~~~~~~g~~-------~~A~~~~~~m~~~ 398 (445)
.++...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 567778888 8888888887654
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.03 E-value=0.45 Score=35.96 Aligned_cols=60 Identities=18% Similarity=0.004 Sum_probs=37.3
Q ss_pred HHhcCChHHHHHHHHHHhcCC-C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 310 LARAGMVEEAEKFIEEKMGGL-G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..+.|++++|.+.|+.+...- . +-....-..++.+|.+.+++++|...+++.+++.|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 345677777777777765542 0 12234455566677777777777777777777777643
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.03 E-value=1.1 Score=40.57 Aligned_cols=347 Identities=11% Similarity=0.043 Sum_probs=172.1
Q ss_pred hhcCCchHHHHHHHHHHhc--CCCCC------------cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCC----CChh
Q 047840 6 MQANFPKLSVFCYLDMLDM--GFEPN------------NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFG----EDPF 67 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~m~~~--~~~p~------------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~ 67 (445)
-+.+.+.+|++.+...... +..|. -.-=+..+.++...|++. +++.+++.+...=++ -+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~-EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFS-EGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHhhhhhcccHH
Confidence 4678888998888877654 32221 111234567788999999 899999888775443 6788
Q ss_pred hHHHHHHHHHhcCCHHHHH--------HHh-------ccCCCCChhhH----------HHHHHHHHcC--CC---hHHHH
Q 047840 68 VVSSLLEFYSLVHKMGTAR--------ALF-------DKSPDRDVVTW----------TTMVDGYGKM--GD---FENAR 117 (445)
Q Consensus 68 ~~~~l~~~~~~~g~~~~a~--------~~~-------~~~~~~~~~~~----------~~l~~~~~~~--g~---~~~A~ 117 (445)
+|+.++-++.++=-++.-. ..+ +++..-+...| ..++.-..-. .+ +=++.
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8888776665542222111 111 11111111111 1111100000 00 00111
Q ss_pred HHhccC-CCCC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 118 ELFEKM-PERN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKP----NESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 118 ~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
+.+++- ..|+ ......+...+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|.+.+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 111110 0121 1122233333333 4555555544443322211 234677777777888888888877777665
Q ss_pred cCCCCchhhh-------hHHHHHHHcc----CChHHHHHHhhcCCCCChh---hHHHH---HHHHHhcCC-hHHHHHHHH
Q 047840 192 YHLEKNVILA-------TAVVDMYSKC----GHVHSALSVFEGISNKDAG---AWNAM---ISGVAMNGD-AKKSLELFD 253 (445)
Q Consensus 192 ~~~~~~~~~~-------~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~---~~~~l---~~~~~~~~~-~~~a~~~~~ 253 (445)
.. |+..+- ..+.+..+.. -+..+-..+++....-|+. .-..| ..-+.+.|. -++|+++++
T Consensus 327 ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 LD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 43 222211 1122222211 1223334444444433322 11112 234555665 777888888
Q ss_pred HHHHcCCCCCHHHHHH----HHHHhh---cCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHH--HHhcCChHHHH
Q 047840 254 RMVKSGTQPTETTFVA----VLTTCT---HAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDL--LARAGMVEEAE 320 (445)
Q Consensus 254 ~m~~~~~~p~~~~~~~----l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~ 320 (445)
...+-. .-|...-+. +=.+|. ....+.+-..+-+-+... |++|- ...-|.|.++ +...|++.++.
T Consensus 405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 776631 112222221 112222 223445555554444444 77663 3444555443 45678888877
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
-.-.-+. .+.|++.+|.-++-++....++++|..++..+
T Consensus 483 ~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 483 LYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6554444 34678888888887778888888887777664
No 244
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.25 Score=39.30 Aligned_cols=124 Identities=9% Similarity=-0.042 Sum_probs=83.9
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQL-----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
-+...|++++|..-|...... +++.. ..|..-..++.+.+.++.|+.-..+.++.+ +........-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 356788999999988888863 33332 334444556778889999999888887766 4455555666678889
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHH--HHHHHHHhcC
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEAN--KVRKLISETG 399 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~--~~~~~m~~~~ 399 (445)
..++++|++-|+++.+.+|....+-...++.=-......+++ +++.++++.|
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999975555444444332333333333 3555665554
No 245
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.86 E-value=0.88 Score=37.97 Aligned_cols=223 Identities=17% Similarity=0.126 Sum_probs=136.7
Q ss_pred CCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCchhhhhHHHHHHHccCChHHHHH
Q 047840 142 SDFKEVLSLFRQMQEVGMK-PNESGLVSVLTACAHLGAITQGLWVHSYAKRY-HLEKNVILATAVVDMYSKCGHVHSALS 219 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 219 (445)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444332211 12345555555556666666666555555442 223344445555555566666666666
Q ss_pred HhhcCCCC--C-hhhHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 220 VFEGISNK--D-AGAWNAMIS-GVAMNGDAKKSLELFDRMVKSGT--QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 220 ~~~~~~~~--~-~~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
.+...... + ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 66655442 1 122222233 67788889999988888855221 123334444444466778899999999988853
Q ss_pred hCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 294 YGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 294 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
... ....+..+...+...++++.|...+....... +.....+..+...+...+..+.+...+.+.....|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 233 36677788888888889999999999887654 223455555555566777799999999999988876
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.17 Score=43.65 Aligned_cols=119 Identities=9% Similarity=-0.037 Sum_probs=96.3
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG---LGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
..|+..+|...++++.+ ..+.|...++..-++|...|+.+.-...++++... ++|.....-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45788888888999987 55777888888888999999999999999988755 22222333344455667889999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+|++.-++..+..+.|.-+....+..+.-.|++.++.++..+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999998888899999999999999999887654
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.76 E-value=0.97 Score=42.07 Aligned_cols=133 Identities=10% Similarity=0.072 Sum_probs=82.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHh
Q 047840 66 PFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145 (445)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (445)
....+.++..+.+.|-.+.|.++-.. + ..-.....+.|+.+.|.++.+... +...|..|.....+.|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 34467777777788888888777322 1 233444567788888877777665 5567888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhc
Q 047840 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 146 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
-|.+.|++..+ +..|+-.|...|+.+...++.+.....|. ++....++.-.|+.+++.+++.+
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888776432 44556666677777777777666666551 33344445555666666655543
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.75 E-value=0.042 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..|..+...+...|++++|++.|+++++..|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777777777777777777777777753
No 249
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.73 E-value=1.4 Score=39.23 Aligned_cols=275 Identities=15% Similarity=0.112 Sum_probs=145.4
Q ss_pred cCCHHHHHHHhccC---CCCChhhHHHHHHHH--HcCCChHHHHHHhccCCC-CChh--hHHHHHHHHHhcCCHhHHHHH
Q 047840 79 VHKMGTARALFDKS---PDRDVVTWTTMVDGY--GKMGDFENARELFEKMPE-RNAV--SWSAIMAAYSRISDFKEVLSL 150 (445)
Q Consensus 79 ~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~ 150 (445)
.||-..|.++-.+. ...|......++.+- .-.|+++.|.+-|+.|.. |... -...|.-.-.+.|..+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 45555665554432 234555555554433 235677777777776654 2211 122233333455666666666
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCchh--hhhHHHHHH---HccCChHHHHHHhhc
Q 047840 151 FRQMQEVGMKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYH-LEKNVI--LATAVVDMY---SKCGHVHSALSVFEG 223 (445)
Q Consensus 151 ~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~g~~~~a~~~~~~ 223 (445)
-+..-.. .| =.......+...+..|+++.|+++.+.-+... +.++.. .-..|+.+- .-.-+...|...-.+
T Consensus 177 Ae~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 177 AERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 5555432 22 24455666666677777777777666655432 222221 111111111 111234444444333
Q ss_pred CCC--CChh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-
Q 047840 224 ISN--KDAG-AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ- 299 (445)
Q Consensus 224 ~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 299 (445)
..+ ||.. .--.-..++.+.|+..++-.+++.+-+....|+.. ..|.+...-+.+..-+++..+...++||
T Consensus 255 a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 255 ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 322 2322 22333466778888888888888887765555432 2233222233444445555444455665
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR-IYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 363 (445)
......+..+....|++..|..--+...+ ..|....|..|.+.-. ..|+-.++...+-+.++
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 34445566677777888777766555542 3577777777776654 34888888888777776
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.73 E-value=0.039 Score=32.25 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
++..+..+|.+.|++++|+++|+++++.. +.|...|..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 45667777888888888888888877765 55666665554
No 251
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.69 E-value=0.032 Score=30.35 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.+|..+..++...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45677777788888888888888888877775
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.61 E-value=0.68 Score=39.05 Aligned_cols=103 Identities=10% Similarity=0.017 Sum_probs=68.8
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-C-CCCHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARAGMVEEAEKFIEEKMGGL-G-GGDANVWGA 340 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~ 340 (445)
.|+.-+..+ +.|++..|..-|....+. .+-+ ...+-.|..++...|++++|..+|..+.+.- - +.-+..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455555444 446688888888777764 2222 2233457778888888888888887776542 1 123466777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
|.....+.|+.++|...|+++.+.-|..+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777888888888888888888888875544
No 253
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.59 E-value=2.6 Score=41.48 Aligned_cols=117 Identities=10% Similarity=0.034 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQL--EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
.+.+.|...+.......++.+.. ..+..+.......+..++|...++...... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 45577888887765543333332 223333333333322566777776653222 24444455555555778888777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..+..|-...........-+++++...|+.++|...|+.+.
T Consensus 333 ~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 333 TWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 77777655444456667778888777888888888887764
No 254
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.58 E-value=0.14 Score=42.97 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=60.0
Q ss_pred CChhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------------ChhHHHH
Q 047840 126 RNAVSWSAIMAAYSR-----ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG----------------AITQGLW 184 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~~ 184 (445)
+|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+.. +-+-++.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 444555554444432 2445555555666777777777777777776654322 3455778
Q ss_pred HHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 185 VHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
++++|...|+.||..+-..|++++.+.+-.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 899999999999988888888888887754
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=0.4 Score=37.24 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=56.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh-HHHHHH--HHHHhcCC
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE-HYACVV--DLLARAGM 315 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~g~ 315 (445)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.. .-.|-.. -..-|= -.+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 34455566666666665554321111 0011112244556666666666666543 1112111 111111 12345566
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
++....-.+.+...+-+--...-..|.-+-.+.|++..|.+.|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666655554333222333444555555566666666666666655
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.47 E-value=1.9 Score=39.14 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=106.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH-HHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG-TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY-ACVVD 308 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~ 308 (445)
+|-..+..-.+....+.|..+|.+..+.| +.++...+++++..++. |+...|..+|+.-... -||...| .-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHHHH
Confidence 56667777778888999999999999998 67888899999987765 8889999999887754 3454444 45667
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
.+.+.++-+.|..+|+..+..- ..+ ..+|..++.--...|+...+..+-+++.+.-|..
T Consensus 475 fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 7788999999999999654321 233 5679999998899999999999999999988863
No 257
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.47 E-value=0.011 Score=45.65 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHH
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFEN 115 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 115 (445)
++..+.+.+... ....+++.+...+...+...++.++..|++.++.+...++++.... .....++..|.+.|.+++
T Consensus 13 vi~~~~~~~~~~-~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 13 VISAFEERNQPE-ELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CHHHCTTTT-GG-GCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHhCCCHH-HHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 455566666666 6666677666655555666677777777777666777766663222 333445555555666666
Q ss_pred HHHHhccCC
Q 047840 116 ARELFEKMP 124 (445)
Q Consensus 116 A~~~~~~~~ 124 (445)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666555544
No 258
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.45 E-value=0.94 Score=42.15 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred HHHHhcCCHhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 136 AAYSRISDFKEVLSLFRQM-QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 136 ~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
....-.++++.+.+....- .-..+ +..-...++..+.+.|..+.|.++-.+-. .-.+...+.|++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 4455677788877666411 11112 24446677777777777777776643321 123445677888
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh
Q 047840 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY 294 (445)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (445)
+.|.++.++.. +...|..|.....+.|+.+-|.+.|.+..+ |..++-.|.-.|+.+.-.++.+.....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~- 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER- 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-
Confidence 88888776665 555788888888888888888877776432 233444455566666666666555543
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
| -++....++.-.|+.++..+++.+-
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 2344444555567777777766654
No 259
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.44 E-value=0.21 Score=42.07 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=71.7
Q ss_pred HHHHhhcCC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC-----------
Q 047840 217 ALSVFEGIS--NKDAGAWNAMISGVAMN-----GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK----------- 278 (445)
Q Consensus 217 a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------- 278 (445)
.+..|..+. ++|-.+|.+.+..|... +..+=....++.|.+-|+.-|..+|+.|+..+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445566665 46777888888877653 556666777888999999999999999998775532
Q ss_pred -----cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 279 -----MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 279 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
+-+-+++++++|... |+.||..+-..|+.++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhccccc
Confidence 234567778888754 888888887788888777654
No 260
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.40 E-value=2.2 Score=43.65 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=75.6
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 279 (445)
.|.-.++.--+.|.+++|..++..-.+.-...|.+....+.....+++|--.|+..-+. .-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhcc
Confidence 44445555566667777776665444444446666667777778888888777654221 124667778889
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
|.+|..+..++.. +-.--..+-..|+..+...++.-+|-++..+..
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 9988888877753 111112223567777888888888888888764
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.38 E-value=0.45 Score=35.04 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=51.7
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHHHcCC
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN---VWGALLSACRIYGK 350 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 350 (445)
+...|+++.|++.|.+... -.+-....||.-..++.-.|+.++|++-+++.++..-..... .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4455666666666666653 223345566666666666666666666666655442122222 23333344566677
Q ss_pred hHHHHHHHHHHHHhCCC
Q 047840 351 IEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~ 367 (445)
.+.|..-|+.+-++|.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777766666654
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.29 E-value=0.48 Score=41.48 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=25.6
Q ss_pred HHhcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChhHHHH
Q 047840 138 YSRISDFKEVLSLFRQMQEV--GMKPNESGLVSVLTACAHLGAITQGLW 184 (445)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~ 184 (445)
+....+.++|+..+.+-... +...-..++..+..+.+..|.++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 44566777777777665442 111122345555566666666655543
No 263
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.26 E-value=0.23 Score=39.48 Aligned_cols=90 Identities=20% Similarity=0.055 Sum_probs=75.6
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGD-----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
.-+...|++++|..-|.+.++.- ++. ...|..-..++.+.+.++.|+.-..++++++|....+....+.+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34678899999999999988764 332 234555567788999999999999999999999888888889999999
Q ss_pred CChHHHHHHHHHHHhc
Q 047840 383 GWDMEANKVRKLISET 398 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~ 398 (445)
.++++|++-++++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999988764
No 264
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.16 E-value=1.7 Score=36.61 Aligned_cols=159 Identities=11% Similarity=0.085 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKS---GT--QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEH 302 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 302 (445)
...++....+.+++++.++.|+++..- .+ .-+..+.+.++...+...+.+--..+++.-.....-..+ ..|
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344555566666666666666555321 01 123344555555554444444333333322211110111 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCC----CCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCc
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGL----GGGD-------ANVWGALLSACRIYGKIEVGNRVWRKLAEM--GITDF 369 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~ 369 (445)
-..|...|...|.+.+..+++.++.... ...| ..+|..-++.|....+-.+...++++.+.. ..++|
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 2345555555666666666665553211 0111 223444455555555555566666665542 22344
Q ss_pred hhHHHHH----HHHHHcCChHHHHH
Q 047840 370 STHVLSY----NIYKEAGWDMEANK 390 (445)
Q Consensus 370 ~~~~~l~----~~~~~~g~~~~A~~ 390 (445)
.+...+- ....+.|+|++|..
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHh
Confidence 3333222 23445566666554
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.16 E-value=2 Score=37.45 Aligned_cols=161 Identities=10% Similarity=-0.050 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 231 AWNAMISGVAMNGDAK---KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+++.+|... +.-....+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHHH
Confidence 4556667777766544 455566666444222 2444445566666688889999999999874 332333444444
Q ss_pred HHH---HhcCChHHHHHHHHHHhcCCCCCCHH-HHHH-HHH-HHH--HcCC------hHHHHHHHHHHHH--hCCCCchh
Q 047840 308 DLL---ARAGMVEEAEKFIEEKMGGLGGGDAN-VWGA-LLS-ACR--IYGK------IEVGNRVWRKLAE--MGITDFST 371 (445)
Q Consensus 308 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-l~~-~~~--~~g~------~~~a~~~~~~~~~--~~~~~~~~ 371 (445)
..+ .. .....|...++.++...+.|... .... ++. .+. ..++ ++...+++..+.+ .+|-++.+
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 33 23455666666655544444443 1111 111 111 1111 3444444553333 22223222
Q ss_pred ---HHHH----HHHHHHcCChHHHHHHHHHH
Q 047840 372 ---HVLS----YNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 372 ---~~~l----~~~~~~~g~~~~A~~~~~~m 395 (445)
...+ +..+.+.+++++|.+.++-.
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2222 34577789999999988743
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.14 E-value=0.16 Score=43.35 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|...|+...|+..|+++.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777777777777777777777666 56677777777777777777777777777665
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.13 E-value=2.4 Score=38.34 Aligned_cols=150 Identities=7% Similarity=-0.043 Sum_probs=78.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC--hhH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP---TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ--LEH 302 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 302 (445)
...+|..++..+.+.|+++.|...+.++...+..+ ++.....-...+-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777888888888888777776643211 2333333445555667777777777777652 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY------GKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
...+...... ..+.....- ........-..++..+...+... +..+++...|+++.+..|.....+..++
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTN--LDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred HHHHhhcccc--ccccccccc--hhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 1111111000 000000000 00000000112334444444444 7788999999999999998777788777
Q ss_pred HHHHHc
Q 047840 377 NIYKEA 382 (445)
Q Consensus 377 ~~~~~~ 382 (445)
..+.+.
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 765554
No 268
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.13 E-value=0.67 Score=43.69 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChh-----HHHHHHHHHHh----cCChHH
Q 047840 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLE-----HYACVVDLLAR----AGMVEE 318 (445)
Q Consensus 248 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~----~g~~~~ 318 (445)
..-+|.-+..- ++| .+..++....-.|+-+.+++.+....+..++.-... .|...+..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34445555443 333 344566667778999999999988876434433222 22222332322 456788
Q ss_pred HHHHHHHHhcCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 319 AEKFIEEKMGGLGGGDANVWGA-LLSACRIYGKIEVGNRVWRKLAEMGI----TDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
|.++++.+...- |+...|.. -.+.+...|++++|++.|+++..... -....+..+++.+.-.++|++|.+.+.
T Consensus 252 a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 999999987543 66655543 34567788999999999998775221 145567789999999999999999999
Q ss_pred HHHhc
Q 047840 394 LISET 398 (445)
Q Consensus 394 ~m~~~ 398 (445)
.+.+.
T Consensus 330 ~L~~~ 334 (468)
T PF10300_consen 330 RLLKE 334 (468)
T ss_pred HHHhc
Confidence 99874
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.11 E-value=2.8 Score=38.82 Aligned_cols=54 Identities=7% Similarity=0.198 Sum_probs=23.6
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
++.+.|+.++|.+.++++.+.+....+......|+.++...+.+.++..++.+-
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334445555555555554433111112223344445555555555555555444
No 270
>PRK11906 transcriptional regulator; Provisional
Probab=95.10 E-value=2.2 Score=39.17 Aligned_cols=160 Identities=12% Similarity=0.064 Sum_probs=102.8
Q ss_pred hhH--HHHHHHHHhc-----CChHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHhh---------cCCcHHHHHHHHHHhH
Q 047840 230 GAW--NAMISGVAMN-----GDAKKSLELFDRMVKS-GTQPTE-TTFVAVLTTCT---------HAKMVRDGLNLFENMS 291 (445)
Q Consensus 230 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 291 (445)
..| ...+.+.... ...+.|+.+|.+.... ...|+- ..|..+..++. ...+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554431 2356788888888722 234443 33333322221 1234556666777666
Q ss_pred HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 292 AVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+. -+.|......+..+..-.++++.|...|++....+ +....+|-.....+.-.|+.++|.+.+++..++.|....+
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 53 24456666677777788888999999999998776 5556777777777888999999999999999999974333
Q ss_pred --HHHHHHHHHHcCChHHHHHHHH
Q 047840 372 --HVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 372 --~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
....++.|+.. ..++|.+++-
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHh
Confidence 22333355554 4566776554
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=1.6 Score=36.14 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (445)
.|..-..+|...+++++|...+.+..+. ..-+...|+ .....++|.-+.+++.+. +.-+..|+.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555666777788888887776665431 111221221 122344555555555443 223345566666777
Q ss_pred ccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS---GT--QPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 210 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
.+|.++.|-..+++.-+ ....-++++|+++|++...- +- +.-...+..+-..+.+...+++|-
T Consensus 103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 77777766655554311 22344566666666654321 10 011122333444455666666655
Q ss_pred HHHHHhHHh---hCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 285 NLFENMSAV---YGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGG---LGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 285 ~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
..+.+-... +.--++ -..|-..|-.+.-..++..|...++.--+. .-+.+..+...|+.+| ..|+.+++..+
T Consensus 171 ~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 171 TAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 444332210 000111 122444445555667888888888773322 2234566777788777 45677766555
Q ss_pred H
Q 047840 358 W 358 (445)
Q Consensus 358 ~ 358 (445)
+
T Consensus 250 l 250 (308)
T KOG1585|consen 250 L 250 (308)
T ss_pred H
Confidence 4
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.88 E-value=1.3 Score=40.87 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=26.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
.+..++.+.|+.++|++.++++.+..|. +..+...|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444445555555555555443332 2333444455555555555555544443
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=2.4 Score=36.39 Aligned_cols=167 Identities=10% Similarity=0.060 Sum_probs=100.5
Q ss_pred HHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 216 SALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 216 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
...++++++..+....-..-.......|++.+|..+|+........ +...-..+..+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 3344444444432222222233456678888888888887765332 3455566777888888888888888877643 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCchhHH
Q 047840 296 VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI--TDFSTHV 373 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~ 373 (445)
-.........-+..+.+.....+...+-++... . +-|...-..+...+...|+.+.|.+.+-.+++.+. .+...-.
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 111112222334445555555544444444422 2 34777777788888888888888888777776443 4666777
Q ss_pred HHHHHHHHcCChH
Q 047840 374 LSYNIYKEAGWDM 386 (445)
Q Consensus 374 ~l~~~~~~~g~~~ 386 (445)
.++..+.-.|.-+
T Consensus 277 ~lle~f~~~g~~D 289 (304)
T COG3118 277 TLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHhcCCCC
Confidence 7777777777433
No 274
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.76 E-value=4.9 Score=39.99 Aligned_cols=219 Identities=9% Similarity=-0.032 Sum_probs=112.5
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCchh-------hhhHHH-HHHHccCChHHHHHHhhcCCC--------CChhhHHHHH
Q 047840 173 CAHLGAITQGLWVHSYAKRYHLEKNVI-------LATAVV-DMYSKCGHVHSALSVFEGISN--------KDAGAWNAMI 236 (445)
Q Consensus 173 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~ 236 (445)
.....++++|..++.++...-..|+.. .++++- ......|+++.|.++.+.... +....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345667777777777766543232221 222221 123456778888777654332 2556677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHH--HhhcCCc--HHHHHHHHHHhHHhhCCCC-----ChhHHH
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTF---VAVLT--TCTHAKM--VRDGLNLFENMSAVYGVEP-----QLEHYA 304 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~l~~--~~~~~~~--~~~a~~~~~~~~~~~~~~~-----~~~~~~ 304 (445)
.+..-.|++++|..+..+..+..-.-+...+ ..+.. .+...|+ ..+....+......+.... -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999998888776553222233322 22222 2445563 3333334444333211111 123333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCC--CCCCH--HH--HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chhHH---
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGGL--GGGDA--NV--WGALLSACRIYGKIEVGNRVWRKLAEMGITD--FSTHV--- 373 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~--~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~--- 373 (445)
.+..++.+ .+.+..-.....+.+ ..|.. .. +..|+......|+.++|...+.++....... ...|.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 333333222221111 11222 11 2356777788899999999999888733221 11121
Q ss_pred --HHHHHHHHcCChHHHHHHHHH
Q 047840 374 --LSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 374 --~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.-.......|+..+|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 222234456888888776665
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.71 E-value=2.2 Score=35.78 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDF---STHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+.+-|.+.|.+..|..-++++++.-|+.. ..+..+..+|...|-.++|...-+-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 456677888888888888888888655533 344556677888888888887766554
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.69 E-value=0.34 Score=42.38 Aligned_cols=193 Identities=12% Similarity=0.177 Sum_probs=116.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHh-------ccCCCC--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH-cCCCC---CHHH
Q 047840 99 TWTTMVDGYGKMGDFENARELF-------EKMPER--NAVSWSAIMAAYSRISDFKEVLSLFRQMQE-VGMKP---NESG 165 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~-------~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p---~~~~ 165 (445)
++..+..+.++.|.+++++..- ....+. --..|-.+.+++-+.-++.+++.+-..-.. .|..| ....
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4455556666666666654431 111111 233456666677777777777766554433 12222 1123
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCC-----CCchhhhhHHHHHHHccCChHHHHHHhhcCCC-------CChh---
Q 047840 166 LVSVLTACAHLGAITQGLWVHSYAKRYHL-----EKNVILATAVVDMYSKCGHVHSALSVFEGISN-------KDAG--- 230 (445)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~--- 230 (445)
..++..++...+.++++.+.|+.+.+.-. -....++..|...|.+..|+++|.-+..+..+ .|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44566777778888888888888765321 12346788888899999998887766554322 2222
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 231 ---AWNAMISGVAMNGDAKKSLELFDRMVK----SGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 231 ---~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
+...|.-++...|+.-.|.+..++..+ .|-.|. ......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223345567778888888887776543 343332 2344566677888999999888887665
No 277
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.65 E-value=0.18 Score=43.62 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=62.5
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
-|.++|.+++|+.+|..... +.| |..++..-..+|.+..++..|..-....+..+ ..-...|..-+.+-...|+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 46677777777777777663 344 66666666667777777777776666655443 33345566666666667777
Q ss_pred HHHHHHHHHHHHhCCCCc
Q 047840 352 EVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~ 369 (445)
.+|.+-++.++++.|.+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHhHHHHHhhCcccH
Confidence 788887888888777743
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.50 E-value=1.2 Score=34.51 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=68.9
Q ss_pred HHHHHHHHHH---hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 264 ETTFVAVLTT---CTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC-VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 264 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
..+.+.|+.. -.+.++.+++..++..+.- +.|....... -.-.+...|++.+|..+|+++.+.. |....-.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~k 81 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence 3444555544 3467889999999988884 3665443322 2334678899999999999986544 4444445
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
.|+..|....+-..=...-+++.+.+++ +. -..++..+....+...|..
T Consensus 82 ALlA~CL~~~~D~~Wr~~A~evle~~~d-~~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 82 ALLALCLYALGDPSWRRYADEVLESGAD-PD-ARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhcCCC-hH-HHHHHHHHHHhccccchhh
Confidence 5555555544444445555666665553 22 2233444444444333333
No 279
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.45 E-value=2.6 Score=35.40 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=110.4
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCC------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNK------DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
...|+ -+..-.+.|++++|.+.|+.+... ...+.-.++-++.+.++++.|+..+++....-......-|..-|
T Consensus 35 ~~LY~-~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYN-EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444 445567889999999999998763 23355566778889999999999999987753322233344444
Q ss_pred HHhh---cC----Cc---HHHHHHHHHHhHHhhC---CCCChhHH------------HHHHHHHHhcCChHHHHHHHHHH
Q 047840 272 TTCT---HA----KM---VRDGLNLFENMSAVYG---VEPQLEHY------------ACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 272 ~~~~---~~----~~---~~~a~~~~~~~~~~~~---~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
.+++ .. .+ ...|..-|+++..++. ..||...- ..+.+.|.+.|.+..|..-++++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 4443 22 23 3455566666665421 11222221 12345678899999999999999
Q ss_pred hcCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 327 MGGLGGGD---ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 327 ~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
++.- +-. ...+-.+..+|...|-.++|...-+-+....|+++
T Consensus 194 ~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 194 LENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred Hhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 8872 333 34566677889999999999887555555555544
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.40 E-value=0.11 Score=28.74 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
|..|...|.+.|++++|+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555553
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.34 E-value=4.8 Score=38.09 Aligned_cols=363 Identities=12% Similarity=0.090 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHhcCCCCCccc-HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHH-hcCCHHHHHHHh
Q 047840 12 KLSVFCYLDMLDMGFEPNNYT-FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYS-LVHKMGTARALF 89 (445)
Q Consensus 12 ~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 89 (445)
+.+..++..++.. -|.... |......=.+.|..+ .+..+|+..+. +++.+...|......+. ..|+.+.....|
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~-~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAE-NSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 4445555555532 254443 344444446777888 88888888877 57777777777665544 346777777778
Q ss_pred ccCCC------CChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHh---c------CCHhHHHHHHHHH
Q 047840 90 DKSPD------RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSR---I------SDFKEVLSLFRQM 154 (445)
Q Consensus 90 ~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~------~~~~~a~~~~~~~ 154 (445)
+.... .+...|...|.--...+++.....+++++.+-....|+..-.-|.+ . ...+++.++-...
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 76543 2555677777777778888888888888876333333332222211 1 1223333222221
Q ss_pred HH-------------------cCCCCC-HH--HHHHHHHH-------HHccCChhHHHHHHHHHHHcC---C----CCch
Q 047840 155 QE-------------------VGMKPN-ES--GLVSVLTA-------CAHLGAITQGLWVHSYAKRYH---L----EKNV 198 (445)
Q Consensus 155 ~~-------------------~~~~p~-~~--~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~~---~----~~~~ 198 (445)
.. .-..|. .. ..+.+... +............++.-.+.. + +++.
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 11 000111 10 11111111 111112222222333322221 1 2245
Q ss_pred hhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-h
Q 047840 199 ILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-C 274 (445)
Q Consensus 199 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~ 274 (445)
.+|..-+..-...|+.+.+.-+|+...-| -...|-..+.-....|+.+-|..++....+--++ +......+-.. .
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHHHHH
Confidence 67777778888899999999999887654 2334555555555558888888777665554222 22222222222 3
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChh-HHHHHHHHHHhcCChHHHH---HHHHHHhcCCCCCCHHHHHHHHH-----HH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLE-HYACVVDLLARAGMVEEAE---KFIEEKMGGLGGGDANVWGALLS-----AC 345 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~-----~~ 345 (445)
-..|+...|..+++.+... . |+.. .-..-+....+.|+.+.+. .++...... ..+..+...+.- .+
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRY 451 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHH
Confidence 4578999999999999975 3 5533 2223345566788888888 444444322 222222222221 23
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.-.++.+.|..++.++.+..|++...|..+++.....+.
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 346788999999999999999988888888887777653
No 282
>PRK09687 putative lyase; Provisional
Probab=94.24 E-value=3.4 Score=35.97 Aligned_cols=62 Identities=13% Similarity=-0.117 Sum_probs=29.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
++..+-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|+..+.++.+..|
T Consensus 204 ~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred CChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344444455555555555 33444443333222 1 123444555555553 45556666555444
No 283
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.14 E-value=2 Score=32.83 Aligned_cols=125 Identities=9% Similarity=0.057 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ .......+.. .++.......+..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 44556666666677777777777766653 45566677777776543 2333333331 122233344566666
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY-GKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
+.+-++++..++.++ |. +...+..+... ++++.|.+++.+ +.++..|..++..+
T Consensus 81 ~~~l~~~~~~l~~k~---~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 81 KAKLYEEAVELYKKD---GN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HcCcHHHHHHHHHhh---cC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 777777777777665 31 22223333333 666666666654 22344555555444
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=3 Score=34.71 Aligned_cols=203 Identities=14% Similarity=0.056 Sum_probs=117.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC--hhhHHHHHHHHHhc
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD--AGAWNAMISGVAMN 242 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~ 242 (445)
.|.-...+|....++++|..-+.+..+.- +.+...|.+ ...++.|.-+.+++.+-+ +..|+.-...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-EnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 45555667778888888887776665321 222222221 123444444555544432 22455556778888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHHhcCChHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG----VEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
|.++.|-..+++.-+. ....++++|+++|.+...... .+.-...+......+.+...+++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8888777777665332 123345555555555443211 11123345555667778888888
Q ss_pred HHHHHHHHhcC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCchhHHHHHHHHHHcCChHHHH
Q 047840 319 AEKFIEEKMGG----LGGGDA-NVWGALLSACRIYGKIEVGNRVWRKLAE----MGITDFSTHVLSYNIYKEAGWDMEAN 389 (445)
Q Consensus 319 A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~ 389 (445)
|-..+.+-... .-.++. ..+...|-.+.-..++..|...++.-.+ .++++..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 77666543211 112232 3345555556666799999999998655 4566778888888776 467777777
Q ss_pred HHH
Q 047840 390 KVR 392 (445)
Q Consensus 390 ~~~ 392 (445)
.++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 654
No 285
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.03 E-value=3.8 Score=35.72 Aligned_cols=221 Identities=9% Similarity=0.033 Sum_probs=116.2
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHccC-ChhHHHHHHHHHHHc----C----CCCc-----
Q 047840 139 SRISDFKEVLSLFRQMQEVGMKPNESGLVSV-------LTACAHLG-AITQGLWVHSYAKRY----H----LEKN----- 197 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 197 (445)
.+.|+.+.|..++.+........++.....+ .......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4567777777777766542211122222222 22233444 777776666665443 1 1222
Q ss_pred hhhhhHHHHHHHccCChH---HHHHHhhcCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 198 VILATAVVDMYSKCGHVH---SALSVFEGISN--K-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
..+...++.+|...+..+ +|..+++.+.. + .+..+..-+..+.+.++.+.+.+.+.+|... +.-....+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence 245677788888877654 44555555533 2 3445555667777788999999999999886 332344455555
Q ss_pred HHh---hcCCcHHHHHHHHHHhHHhhCCCCChh-HHH-HHHHH-HH--hcCC------hHHHHHHHHHHhcC-CCCCCHH
Q 047840 272 TTC---THAKMVRDGLNLFENMSAVYGVEPQLE-HYA-CVVDL-LA--RAGM------VEEAEKFIEEKMGG-LGGGDAN 336 (445)
Q Consensus 272 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~-~l~~~-~~--~~g~------~~~A~~~~~~~~~~-~~~~~~~ 336 (445)
..+ .... ...+...+..+... .+.|... ... .++.. +. +.++ .+...++++.+.+. +.+.+..
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 544 3333 34555666555544 4455543 211 12211 11 1111 34444455533222 2233333
Q ss_pred HHH---HH----HHHHHHcCChHHHHHHHHHHH
Q 047840 337 VWG---AL----LSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 337 ~~~---~l----~~~~~~~g~~~~a~~~~~~~~ 362 (445)
+-. ++ +..+.+.++++.|.+.|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 322 22 234567889999999988554
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.91 E-value=0.64 Score=35.26 Aligned_cols=84 Identities=11% Similarity=0.012 Sum_probs=54.8
Q ss_pred hhHHHHHHHHH---HhcCChHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 300 LEHYACVVDLL---ARAGMVEEAEKFIEEKMGGL-GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 300 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
..+.+.|++.. ...++++++..+++.+.-.. -.+...++. ...+...|++.+|.++|+++.+..+..+..-..+
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 34455555543 35788888888888876432 012233333 3346778899999999999888777666555666
Q ss_pred HHHHHHcCCh
Q 047840 376 YNIYKEAGWD 385 (445)
Q Consensus 376 ~~~~~~~g~~ 385 (445)
+.++.-.|+.
T Consensus 85 A~CL~al~Dp 94 (153)
T TIGR02561 85 ALCLNAKGDA 94 (153)
T ss_pred HHHHHhcCCh
Confidence 6666666664
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=7.7 Score=38.40 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
+.+.|++++|...|-+-... +.| ..++.-+....+.. .--.+++.+.+.|+. +...-+.|+.+|.+.++.+.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ik-nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIK-NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHH-HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 45789999999988876531 112 23566665555566 566677788887864 44555788999999999999
Q ss_pred HHHHhccCCCCChh-hHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 047840 85 ARALFDKSPDRDVV-TWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154 (445)
Q Consensus 85 a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 154 (445)
-.+..+...+.... -....+..+.+.+-.++|..+-.+... +...... .+-..+++++|++.+..+
T Consensus 450 L~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 88888776632111 234556666666666666666554443 2222222 233456677777766654
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.77 E-value=1.6 Score=30.58 Aligned_cols=60 Identities=13% Similarity=0.063 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
-+..+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+...-.+....|..++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 367777888887788999999999999999999999999999998875554443565544
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=3.4 Score=34.13 Aligned_cols=108 Identities=9% Similarity=0.072 Sum_probs=54.7
Q ss_pred cCCcHHHHHHHHHHhHHhh----CCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHhcC--CCCCCHHH---HHHHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVY----GVEPQLEHYACVVDLLARA-GMVEEAEKFIEEKMGG--LGGGDANV---WGALLSAC 345 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~--~~~~~~~~---~~~l~~~~ 345 (445)
+..++++|...++...+.+ .+..-...+-.+...|-.- .++++|+..|+..-+- +-+.+... +.-+..--
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3346666655555444321 0111112222344444433 5666777776665332 21222222 22333334
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
...+++.+|+++|+++.....+++..-..+=.-+.+.|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAg 202 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAG 202 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHH
Confidence 56788999999999998877766544444333344444
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.70 E-value=0.82 Score=31.62 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
+.-++.+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+......+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 44466677777777778888888888888888888888888888887754433333454443
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.69 E-value=1.8 Score=34.58 Aligned_cols=95 Identities=13% Similarity=-0.015 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCchh----H
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA--NVWGALLSACRIYGKIEVGNRVWRKLAEMGI--TDFST----H 372 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~----~ 372 (445)
..+..+.+.|.+.|+.++|.+.|.++.+....+.. ..+..+++.....+++..+...+.++...-. .+... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667888889999999999999988776544443 4567788888888899888888888776221 22211 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHH
Q 047840 373 VLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
..-+-.+...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 12333456678888888877544
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.67 E-value=0.18 Score=27.79 Aligned_cols=26 Identities=15% Similarity=-0.047 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
No 293
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.67 E-value=0.21 Score=26.92 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 337 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+|..+...+...|++++|.+.|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456666677777777777777777777666
No 294
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.61 E-value=0.21 Score=28.50 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555566666666666666665554
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.57 E-value=8.4 Score=38.16 Aligned_cols=167 Identities=12% Similarity=0.094 Sum_probs=96.8
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHH----HHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLI----KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL 78 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (445)
..+.+..-++-|+.+-+. .+ .+..+...+. .-+.+.|+++ .|...|-+.+.. +.|. .++.-|..
T Consensus 342 ~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~-~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFD-EATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 344555667777777554 23 2333333333 3356778888 666665443321 2222 34555666
Q ss_pred cCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChh-hHHHHHHHHHhcCCHhHHHHHHHHH
Q 047840 79 VHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPERNAV-SWSAIMAAYSRISDFKEVLSLFRQM 154 (445)
Q Consensus 79 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 154 (445)
...+.+-..+++.+.+. +...-..|+.+|.+.++.+.-.++.+........ -....+..+.+.+-.++|..+-...
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 66666666666665542 4445567889999999999888888877632111 2445667777777777776654443
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 047840 155 QEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYA 189 (445)
Q Consensus 155 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 189 (445)
.. +......++ -..+++++|.++++.+
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 21 333333333 3456677777665543
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.39 E-value=7.3 Score=36.94 Aligned_cols=126 Identities=13% Similarity=0.171 Sum_probs=85.1
Q ss_pred cccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHH
Q 047840 30 NYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDG 106 (445)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 106 (445)
...|..++.---.....+ .++.+++.+... .|.--.-|......=.+.|..+.+.++|++.+. .+...|...+.-
T Consensus 45 f~~wt~li~~~~~~~~~~-~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVD-ALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred ccchHHHHhccCchhHHH-HHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 334555555444444445 677777777653 222233466666666788999999999998765 255556655544
Q ss_pred HH-cCCChHHHHHHhccCCC------CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 107 YG-KMGDFENARELFEKMPE------RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 107 ~~-~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
+. ..|+.+...+.|++... .+...|...|..-...+++.....+|++.++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 56777777888887764 35667888888888889999999999998873
No 297
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.36 E-value=16 Score=40.87 Aligned_cols=313 Identities=9% Similarity=0.069 Sum_probs=171.3
Q ss_pred HHHHHHHhcCCHHHHHHHhccC----CCC--ChhhHHHHHHHHHcCCChHHHHHHhcc-CCCCChhhHHHHHHHHHhcCC
Q 047840 71 SLLEFYSLVHKMGTARALFDKS----PDR--DVVTWTTMVDGYGKMGDFENARELFEK-MPERNAVSWSAIMAAYSRISD 143 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 143 (445)
.+..+=.+++.+.+|.-.+++- .+. ...-+-.+...|..-+++|...-+... ...|+. ...|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 3444556788888998888873 111 222344445588888888887777663 333322 233445667899
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchh-hhhHHHHHHHccCChHHHHHHhh
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVI-LATAVVDMYSKCGHVHSALSVFE 222 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~ 222 (445)
+..|...|+.+.+.+ ++...+++-+++.....+.+....-..+-..... .+... .++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998764 3346677877777777777777666554444332 22222 23333445567778887777766
Q ss_pred cCCCCChhhHHHH--HHHHHhcCC--hHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 223 GISNKDAGAWNAM--ISGVAMNGD--AKKSLELFDRMVKSGTQP---------TETTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 223 ~~~~~~~~~~~~l--~~~~~~~~~--~~~a~~~~~~m~~~~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
..+...|... ...+.+..+ .-.-.+..+-+++.-+.| -...|..++....-. +.+. ..+.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~---~~~~ 1615 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN---SIEE 1615 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH---HHHH
Confidence 4455555544 222222222 111112333332221111 012233333222110 0111 1111
Q ss_pred hHHhhCCCCChhH------HHHHH---HHHHhcCChHHHHH-HHHHH-hcCCC-CCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 290 MSAVYGVEPQLEH------YACVV---DLLARAGMVEEAEK-FIEEK-MGGLG-GGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 290 ~~~~~~~~~~~~~------~~~l~---~~~~~~g~~~~A~~-~~~~~-~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
. .++.++..+ |..-+ ..+.+..+.--|.+ .+... .+.+. .--..+|....+.....|+++.|...
T Consensus 1616 l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1616 L---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred h---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 1 122332211 21111 11222111111111 11111 11111 22356899999999999999999998
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 358 WRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
+-.+.+..+ +.++...+......|+...|+.+++.......
T Consensus 1693 ll~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888888775 45788999999999999999999998876544
No 298
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.05 E-value=2.8 Score=31.15 Aligned_cols=59 Identities=8% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
..+..+...|+-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3445555566666666666655442 3455555555666666666666666666555543
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.00 E-value=3.9 Score=32.75 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHH--HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHHhcCChHHH
Q 047840 247 KSLELFDRMVKSGTQPTETTFVAV--LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-----CVVDLLARAGMVEEA 319 (445)
Q Consensus 247 ~a~~~~~~m~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A 319 (445)
+......++...+......++..| ...+...+++++|...++..... |....+. .|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444445555554222222222222 33466777788887777766632 2222222 234455667788888
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+.+++...+.+ -.......-.+++...|+-++|...|++.++.++
T Consensus 146 L~~L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 88877664333 1223344455677777888888888888777663
No 300
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.96 E-value=2.1 Score=32.56 Aligned_cols=63 Identities=14% Similarity=0.301 Sum_probs=44.9
Q ss_pred CHHHHHHHHHH---hhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 263 TETTFVAVLTT---CTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 263 ~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
+....+.|+.. -...++.+++..+++.+.-. .|+ ..++... .+...|++++|..+|+++.+.+
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRVL---RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 34445555544 34578999999999999844 555 3444433 3678999999999999997654
No 301
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=1.1 Score=38.52 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=74.1
Q ss_pred cCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-C-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 192 YHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-D-----AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 192 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
.|.+....+...++..-....+++.++..+-++... + ..+-.+.++.+.+ -++++++.++..=++-|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 455556666666776667778888998888777642 1 1122223333333 37788998888888889999999
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
+++.+|+.+.+.+++.+|.++.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988777754
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.88 E-value=1.5 Score=35.15 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (445)
..+..+...|.+.|+.+.|++.|.++.+....|. ...+..++......+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566777788888888888888888776543332 234556677777777877777777666543
No 303
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.72 E-value=0.14 Score=27.86 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=18.2
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
+.++.. |.|+..|+.+...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334434 556666666666666666666664
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.57 E-value=4.2 Score=31.96 Aligned_cols=133 Identities=11% Similarity=0.077 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCC--ChHHHHHHhccCCCCCh
Q 047840 51 MFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMG--DFENARELFEKMPERNA 128 (445)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~ 128 (445)
.+....+.+.+++|+...+..++..+.+.|++.....++.--.-+|.......+-.+.... -..-|++.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 3455556677899999999999999999999999999887655555544444333322221 1344556666654
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
..+..++..+...|++-+|+++.+...... .++ ...++.+..+.+|...-..+++-...
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245667778889999999999987753321 122 23455665566665554455544444
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.54 E-value=15 Score=38.16 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=53.5
Q ss_pred CCCHHHHHHHH----HHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHH
Q 047840 261 QPTETTFVAVL----TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDAN 336 (445)
Q Consensus 261 ~p~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 336 (445)
.|+...+..+. ..+...+.+++|.-.|+..-+. .--+.+|..+|+|.+|+.+-.++ ....|..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql---~~~~de~ 998 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAYKECGDWREALSLAAQL---SEGKDEL 998 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHHHHhccHHHHHHHHHhh---cCCHHHH
Confidence 45665554444 4455667777777777665421 23466788888888888888877 2222322
Q ss_pred H--HHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 337 V--WGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 337 ~--~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
. -..|..-+...+++-+|-+++.+..
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 2 2556666666777666666555543
No 306
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.52 E-value=0.92 Score=38.89 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 337 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++..++..+...|+++.+.+.+++++..+|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555666665555555555554
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.49 E-value=8 Score=34.99 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISNK-------DAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
.....++..++..+.+.|+++.|...+..+... ++.....-+..+...|+..+|+..++.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345567888899999999999999999887652 3455666678888899999999999988874
No 308
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.25 E-value=1.7 Score=39.76 Aligned_cols=121 Identities=9% Similarity=-0.070 Sum_probs=71.5
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
.|+.-.|-+-+....+.+.-.|+.....+ ..+...|+++.+...+...... +.....+..++++.....|++++|..
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45555554444444333233333333222 3355667777777776654321 23445566777777777777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
.-+.|+....+++......+..-...|-++++...++++...+-
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 77777776666666666555566666777777777777654433
No 309
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.02 E-value=0.45 Score=25.25 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=14.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+..++.+.|+.++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555555555443
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.79 E-value=5 Score=31.14 Aligned_cols=89 Identities=15% Similarity=0.061 Sum_probs=50.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV-LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
..-.+.++.+++..++..+.-. .|.......+ ...+...|++.+|..+|+++... .|.......|+..|....+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcC
Confidence 3445677888888888887663 4544333222 22356778888888888887754 4544444555555544333
Q ss_pred hHHHHHHHHHHhcCC
Q 047840 316 VEEAEKFIEEKMGGL 330 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~ 330 (445)
-..=...-+++.+.+
T Consensus 93 D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 93 DPSWRRYADEVLESG 107 (160)
T ss_pred ChHHHHHHHHHHhcC
Confidence 233333333344333
No 311
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.32 E-value=16 Score=36.03 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=75.3
Q ss_pred HHHHhcCCHHHHHHHhccCCCC-----ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHH
Q 047840 74 EFYSLVHKMGTARALFDKSPDR-----DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 148 (445)
+.+.+.+.+++|...-+..... -...+...|..+...|++++|-...-.|-..+..-|.-.+..+...++.....
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 4445556666666665544331 22345566666666666666666666665555555555555555555444332
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHH------------------HHHcCCCCchhhhhHHHHHHHc
Q 047840 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY------------------AKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
.++ .......++..|..++..+.. .+...-.++... ..+. .-+...-..|+..|..
T Consensus 444 ~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 444 PYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLY 517 (846)
T ss_pred ccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHH
Confidence 221 111111233344444444433 111111111100 0110 1122334447888888
Q ss_pred cCChHHHHHHhhcCCCCCh
Q 047840 211 CGHVHSALSVFEGISNKDA 229 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~ 229 (445)
.+++..|..++-...+.+.
T Consensus 518 d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred ccChHHHHHHHHhccChHH
Confidence 8999999888887776543
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.24 E-value=0.53 Score=25.31 Aligned_cols=27 Identities=22% Similarity=0.524 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666667777777777777776665
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.14 E-value=0.34 Score=37.21 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=76.5
Q ss_pred ChhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 1 MIRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
+|..+.+.+.++....+++.+...+...+....+.++..|++.++.+ ....+++ ..+.+....++..+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~-~l~~~L~-------~~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYE-KLLEFLK-------TSNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCC-HHHHTTT-------SSSSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCch-HHHHHcc-------cccccCHHHHHHHHHhcc
Confidence 46677788888889999998887665556777888888888888766 5555554 122244456777788888
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCC
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISD 143 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 143 (445)
.+++|.-++.++...+. .+..+...++++.|.+.+.+. ++...|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~-----al~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDE-----ALEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTT-----CSSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHH-----HHHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 88888777555432111 000122233333333333332 245667777776665554
No 314
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.99 E-value=14 Score=34.62 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=111.0
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHH
Q 047840 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMI 236 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 236 (445)
..|.....+++..+.......-.+.+..+|...| .+...+..++++|... ..+.-..+++++.+ .|+..-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3355666677777777777777777777777765 3556677777777776 44555556664433 2444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPT------ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
..|-+ ++...+...|.+...+ +-|. ...|..+.... ..+.+....+...+....|..--...+.-+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 6667777777766554 2221 11333333221 2456666777777766655555556666666777
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
....++++|++++..+++.. ..|...-..++.-+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHHH
Confidence 78888888888888887766 5666666666655544
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.95 E-value=0.44 Score=23.93 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777888888888877664
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.91 E-value=0.8 Score=39.83 Aligned_cols=90 Identities=11% Similarity=-0.042 Sum_probs=73.2
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChH
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 386 (445)
...|.+.|.+++|+..|...+... +-|++++..-..+|.+...+..|..-...++.++-....+|...+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 346889999999999999877654 4488888888899999999999998888888877766677888888888888888
Q ss_pred HHHHHHHHHHh
Q 047840 387 EANKVRKLISE 397 (445)
Q Consensus 387 ~A~~~~~~m~~ 397 (445)
+|.+-++...+
T Consensus 183 EAKkD~E~vL~ 193 (536)
T KOG4648|consen 183 EAKKDCETVLA 193 (536)
T ss_pred HHHHhHHHHHh
Confidence 88876665543
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.71 E-value=17 Score=35.35 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=73.9
Q ss_pred hcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhhcC----C-cHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 241 MNGDAKKSLELFDRMVK-------SGTQPTETTFVAVLTTCTHA----K-MVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
...+.+.|+.+|+.+.+ .| +......+..+|.+. . +.+.|..++....+. | .|+....-..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 34566666666666654 33 222333444444442 2 556677777766653 3 233332222221
Q ss_pred HHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCh
Q 047840 309 LLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR--IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 309 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 385 (445)
.... ..+...|.++|......| .++...+..+.-... -..+.+.|..+++++.+.++............+.. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 1111 234567777777776666 333333322222111 22356777777777777663322111122222222 666
Q ss_pred HHHHHHHHHHHhcCC
Q 047840 386 MEANKVRKLISETGM 400 (445)
Q Consensus 386 ~~A~~~~~~m~~~~~ 400 (445)
+.+.-.+..+...|.
T Consensus 414 ~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 414 DTALALYLYLAELGY 428 (552)
T ss_pred cHHHHHHHHHHHhhh
Confidence 666666666655554
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.62 E-value=0.64 Score=24.88 Aligned_cols=29 Identities=17% Similarity=-0.047 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999988653
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.49 E-value=2.2 Score=29.65 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+.-++.+-++.+.....-|++....+.+++|.+.+++..|.++++.++.+.+ .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445555556666666777777777777777777777777777777765322 2334555444
No 320
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.40 E-value=0.2 Score=43.42 Aligned_cols=91 Identities=12% Similarity=-0.068 Sum_probs=54.8
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
..|.+++|++.|...+..+ ++....|..-..++.+.++...|++-+..++++.|+...-|-.-..+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3455666666666665555 455555555555666666666666666666666666555555555566666666666666
Q ss_pred HHHHHhcCCccC
Q 047840 392 RKLISETGMKKK 403 (445)
Q Consensus 392 ~~~m~~~~~~~~ 403 (445)
+....+.++.+.
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 666666555443
No 321
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.37 E-value=6.2 Score=37.48 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=94.7
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
.-.|+++.|..++..++++ ..+.++.-+.+.|-.++|+++- ..|+.. .....+.|+++.|.++..
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-----Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------TDPDQR-----FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------CChhhh-----hhhhhhcCcHHHHHHHHH
Confidence 3456777776666665532 2333444455566666666542 222221 223346688888887765
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.. +..-|..|.++....|++..|.+.|.+..+ |..|+-.+...|+.+....+-....+.+..+
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 554 456788888888888999888888887643 4456666667777776666666666666544
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
. ...+|...|+++++.+++..
T Consensus 726 ~-----AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 L-----AFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred h-----HHHHHHHcCCHHHHHHHHHh
Confidence 3 23367778888888887754
No 322
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.05 E-value=17 Score=34.10 Aligned_cols=180 Identities=7% Similarity=0.024 Sum_probs=127.0
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
+.|.....+++..+...-.+.-.+.+-.+|.. .+-..+..++++|..+ ..+.-..+|+++.+..+. |.+.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45666777888888888888877777777764 4667888999999988 668889999999886442 3333344444
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQ------LEHYACVVDLLARAGMVEEAEKFIEEKMGG-LGGGDANVWGALLSAC 345 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 345 (445)
.|-+ ++.+.+...|..+..+ +-|. ...|.-+...- ..+.+....+...+... |...-...+..+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4544 8888999999888764 3331 12444444321 45677777777776544 4444556677777888
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
....++.+|++++..+++.+..+..+-..++..+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 999999999999999999887776666666555444
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.05 E-value=2.6 Score=29.64 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 247 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+..+-++.+.....-|++....+.+.+|.+.+++..|.++++.++.+.+. ....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 45555555555667778888888888888888888888888887765432 233565555
No 324
>PRK09687 putative lyase; Provisional
Probab=89.96 E-value=12 Score=32.53 Aligned_cols=137 Identities=10% Similarity=0.030 Sum_probs=73.2
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNG-DAKKSLELFDRMVKSGTQPTETTFVAVLTTCT 275 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~ 275 (445)
+..+-...+.++.+.++.+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .++..+-...+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 44455555566666665443333344444455544444444554432 23455555555553 345666666677777
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+.++. .+...+-...+. ++ .....+.++...|.. +|...+..+.+.. ||..+-...+.+|.
T Consensus 218 ~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred ccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 77764 344444444432 22 233566777777774 6777777766433 46666665555553
No 325
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.94 E-value=6.1 Score=36.64 Aligned_cols=92 Identities=8% Similarity=0.079 Sum_probs=55.8
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC-RIYGKIEVGNRVWRKL 361 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 361 (445)
...+|..... .+.-|+..|...+..+.+.+.+.+...+|..|...+ +.++..|-.-..-. -.+.+++.|..+|.+.
T Consensus 90 Iv~lyr~at~--rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRATN--RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 3445555554 334477777777766666666777777777777654 44444443333322 2333477777777777
Q ss_pred HHhCCCCchhHHHHHH
Q 047840 362 AEMGITDFSTHVLSYN 377 (445)
Q Consensus 362 ~~~~~~~~~~~~~l~~ 377 (445)
++..|+.+..|....+
T Consensus 167 LR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFR 182 (568)
T ss_pred hhcCCCChHHHHHHHH
Confidence 7777777766654433
No 326
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.69 E-value=3.8 Score=33.09 Aligned_cols=78 Identities=17% Similarity=-0.011 Sum_probs=54.9
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHcCCh
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI----TDFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~ 385 (445)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.++++.++-+++++.. .++.++..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344555 677777777776664455555555555444 5788889999888888433 2677888899999999888
Q ss_pred HHHH
Q 047840 386 MEAN 389 (445)
Q Consensus 386 ~~A~ 389 (445)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 327
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.56 E-value=7.1 Score=33.90 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=44.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSG---TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
.++..-....+++.++.++-+++... ..|+...+ .+++.|.+ -++++++.++..=.. +|+-||..+++.+++.+
T Consensus 69 ~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~f 145 (418)
T KOG4570|consen 69 RLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSF 145 (418)
T ss_pred hhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcch-hccccchhhHHHHHHHH
Confidence 33333334455666666555554431 11221111 22222222 244455555554442 36666666666666666
Q ss_pred HhcCChHHHHHHHHHHhcC
Q 047840 311 ARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~ 329 (445)
.+.+++.+|..+.-.|+..
T Consensus 146 lk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 146 LKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HhcccHHHHHHHHHHHHHH
Confidence 6666666666655555433
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=23 Score=34.98 Aligned_cols=143 Identities=8% Similarity=0.116 Sum_probs=79.0
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCC---CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEP---NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
+.+.+.+++|++..+... |..| -.......|..+...|+++ .|....-.|.. -+..-|...+..+...++
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~-~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYD-EAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHH-HHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 345667777777766543 3333 2234566677777777877 44444433332 245556666666666666
Q ss_pred HHHHHHHhccCCC-CChhhHHHHHHHHHcCCChHHHHHHhccCCC--------------------CChhhHHHHHHHHHh
Q 047840 82 MGTARALFDKSPD-RDVVTWTTMVDGYGKMGDFENARELFEKMPE--------------------RNAVSWSAIMAAYSR 140 (445)
Q Consensus 82 ~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~l~~~~~~ 140 (445)
......++=.... -++..|..++..+.. .+...-.++....+. .+...-..|+..|..
T Consensus 439 l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 439 LTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY 517 (846)
T ss_pred cchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH
Confidence 5554444322222 255677777777766 333333333332210 122223447777778
Q ss_pred cCCHhHHHHHHHHHH
Q 047840 141 ISDFKEVLSLFRQMQ 155 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~ 155 (445)
.+++..|++++-..+
T Consensus 518 d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQ 532 (846)
T ss_pred ccChHHHHHHHHhcc
Confidence 888888887776554
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.22 E-value=3 Score=32.97 Aligned_cols=31 Identities=10% Similarity=0.009 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 352 EVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
++|+.-|++++.++|+...++..++.+|...
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3444444555556666555666666655554
No 330
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.21 E-value=0.52 Score=32.70 Aligned_cols=53 Identities=19% Similarity=0.061 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHcCC
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 384 (445)
+.|...-..+...+...|++++|++.+-.+++.++. +...-..++.++...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344455555555555666666666655555554443 34444555555555554
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=9.4 Score=36.36 Aligned_cols=73 Identities=15% Similarity=0.096 Sum_probs=32.6
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (445)
+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHH
Confidence 4455555544443332 333455555555555555555555544322 33344444444444433333333
Q ss_pred HHHc
Q 047840 255 MVKS 258 (445)
Q Consensus 255 m~~~ 258 (445)
..+.
T Consensus 718 ~~~~ 721 (794)
T KOG0276|consen 718 AKKQ 721 (794)
T ss_pred HHhh
Confidence 3333
No 332
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.94 E-value=14 Score=31.82 Aligned_cols=130 Identities=14% Similarity=0.188 Sum_probs=73.7
Q ss_pred hHHHHHHhhcCCC-----CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhcCCcHHHHHH
Q 047840 214 VHSALSVFEGISN-----KDAGAWNAMISGVAMNG--DAKKSLELFDRMVK-SGTQPTETTFVAVLTTCTHAKMVRDGLN 285 (445)
Q Consensus 214 ~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 285 (445)
+.+|..+|+.... .|......+++...... ....-.++.+-+.. .|..++..+...++..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4566666663222 24555555555544411 22222223333322 2355677777777778888888888777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH-----HhcCCCCCCHHHHHHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE-----KMGGLGGGDANVWGALLS 343 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~~~l~~ 343 (445)
+++......+...|...|..+++.....|+..-...+.++ +.+.++..+...-.++-.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 7777665333455677788888888888887766666654 233444444444444333
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.89 E-value=1.1 Score=25.37 Aligned_cols=29 Identities=24% Similarity=0.085 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++..++..|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46789999999999999999999988653
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.33 E-value=4.9 Score=36.94 Aligned_cols=123 Identities=12% Similarity=0.143 Sum_probs=73.7
Q ss_pred HhcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 047840 240 AMNGDAKKSLE-LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 240 ~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
...|+...|-+ ++..+....-.|+.....+. .+...|+++.+.+.+..... -+.....+..+++......|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566555544 33334443334444433332 34567788888777776654 334455666777777777888888
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
|..+-..|+...++ ++.+...........|-++++...++++....|+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 88887777766543 3333333333444556677777777777776665
No 335
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.15 E-value=13 Score=30.48 Aligned_cols=177 Identities=8% Similarity=0.082 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChh-hHHHHH--HHHHhcCChHHHHHHHHHH
Q 047840 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAG-AWNAMI--SGVAMNGDAKKSLELFDRM 255 (445)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~--~~~~~~~~~~~a~~~~~~m 255 (445)
+.-|..-|.+..... |.-+.+||.|.-.+...|+++.|.+.|+...+-|+. -|..+= -++.--|++.-|.+-+.+.
T Consensus 81 ~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 333443444444332 334677888888888888888888888877765443 222221 1233457888887776666
Q ss_pred HHcCC-CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 047840 256 VKSGT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334 (445)
Q Consensus 256 ~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 334 (445)
-+... .|-...|.-+. -..-++.+|..-+.+=.+ ..+..-|...+-.|. .|++. ...+++++.... ..+
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a-~~n 229 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADA-TDN 229 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhc-cch
Confidence 55422 22112222221 223455555543332222 234444443332222 12211 112233322211 111
Q ss_pred -------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 335 -------ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 335 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
..||--+.+-+...|+.++|..+|+-++....
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 24677788888889999999999998887554
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.14 E-value=0.94 Score=23.96 Aligned_cols=28 Identities=14% Similarity=-0.080 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667899999999999999999998764
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.00 E-value=13 Score=30.03 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=68.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
+...+..+|++++|...++..+......+ ..+-..|.+.....|.+++|+..++...+.+-. +.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 45678899999999999998764321111 123345667788999999999998876543322 233556788999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 047840 384 WDMEANKVRKLISETG 399 (445)
Q Consensus 384 ~~~~A~~~~~~m~~~~ 399 (445)
+-++|..-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999887765
No 338
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.78 E-value=19 Score=31.74 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=72.3
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----ChhHHHHHHHHHHHcCC---CCchhhhhHHHHHHHccCCh
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAH--LG----AITQGLWVHSYAKRYHL---EKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 214 (445)
+++.+.+++.|.+.|..-+..+|.+....... .. ....+..+|+.|++.-. .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888777777654433332 22 24456677777776531 1122223222211 11111
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhcCCc--HHHHHHHHHHh
Q 047840 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTE--TTFVAVLTTCTHAKM--VRDGLNLFENM 290 (445)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~ 290 (445)
+. -.+.+..+|+.+.+.|+..+. .....++..+..... ...+..+++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 10 134566677777776665432 333334333332222 34677778888
Q ss_pred HHhhCCCCChhHHHHHH
Q 047840 291 SAVYGVEPQLEHYACVV 307 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~l~ 307 (445)
.+. |+++....|..+.
T Consensus 209 ~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHc-CCccccccccHHH
Confidence 776 8887777766554
No 339
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.68 E-value=12 Score=29.48 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=80.3
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHH-----HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH--HhhcCCc
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMI-----SGVAMNGDAKKSLELFDRMVKSGTQPTET-TFVAVLT--TCTHAKM 279 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~--~~~~~~~ 279 (445)
+.+.+..++|..-|.++.+.+...|..|. ....+.|+...|...|++.-.....|-.. -...|=. .+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 35677888888888888887666655543 34667888888999998887755444433 2222222 2557788
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
+++.....+-+... +-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 88877777766643 32223333456666677889999999988887654
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.50 E-value=4.9 Score=29.53 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
+..+-++.+....+.|++.+...-+++|.+.+++..|.++|+-+...-++....|-.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4556666777778899999999999999999999999999998887555433344433
No 341
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.48 E-value=1.8 Score=23.12 Aligned_cols=29 Identities=21% Similarity=-0.024 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999987653
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.46 E-value=1.3 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=10.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
.+...+...|+++.|...+++.++.
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3344444444444444444444433
No 343
>PRK10941 hypothetical protein; Provisional
Probab=87.21 E-value=5.2 Score=34.46 Aligned_cols=60 Identities=17% Similarity=0.001 Sum_probs=46.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+.+-.+|.+.++++.|+++.+.++...|+++.-+...+-+|.+.|.+..|..-++...+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 455556777888888888888888888888887777778888888888888876665544
No 344
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.86 E-value=19 Score=31.01 Aligned_cols=59 Identities=12% Similarity=-0.004 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++.....|...|.+.+|.++.++++..+|-+...+..+...+...|+--.|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45566788999999999999999999999988899999999999999888877777664
No 345
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=11 Score=31.62 Aligned_cols=95 Identities=8% Similarity=0.004 Sum_probs=44.0
Q ss_pred HHhhcCCcHHHHHHHHHHhHHhh-----CCCCChhHH-----------HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH
Q 047840 272 TTCTHAKMVRDGLNLFENMSAVY-----GVEPQLEHY-----------ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA 335 (445)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~-----------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 335 (445)
+-+.+.|++.+|...|.++.... .-+|...-| ..+..++...|++-++++...+++... +.|+
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~nv 264 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNV 264 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchH
Confidence 34666777777777776654210 112322211 112222233444444544444444433 3444
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
..|-.-..+.+..-+.++|..-|..+++++|.
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 44444444444444455555555555554443
No 346
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.97 E-value=36 Score=33.21 Aligned_cols=274 Identities=11% Similarity=0.053 Sum_probs=151.2
Q ss_pred hHHHHHHhccCCCC-ChhhHHHHHHH-----HHhcCCHhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHccC--
Q 047840 113 FENARELFEKMPER-NAVSWSAIMAA-----YSRISDFKEVLSLFRQMQE-------VGMKPNESGLVSVLTACAHLG-- 177 (445)
Q Consensus 113 ~~~A~~~~~~~~~~-~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~~-- 177 (445)
...|.++++..... +...-..+... +....+.+.|+..|+...+ .| ++.....+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776653 33333333222 3456789999999988866 44 3334556666666543
Q ss_pred ---ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc-cCChHHHHHHhhcCCCC-ChhhHHHHHHHHHh----cCChHHH
Q 047840 178 ---AITQGLWVHSYAKRYHLEKNVILATAVVDMYSK-CGHVHSALSVFEGISNK-DAGAWNAMISGVAM----NGDAKKS 248 (445)
Q Consensus 178 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a 248 (445)
+...|..++...-+.| .|+.......+..... ..+...|..+|...... ...++-.+..+|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5667888888888887 3344333222222222 24577888888776543 44444444333332 3467888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH---Hh----cCChHHHHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL---AR----AGMVEEAEK 321 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 321 (445)
..++++..+.| .|...--...+..+.. +.++.+...+..+... +.+.....-..++... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 88888888887 3332222233333444 6666666666655543 3322111111111111 11 224556666
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc---CChHHHHHHHHH
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIY----GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA---GWDMEANKVRKL 394 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 394 (445)
.+......| +......+...|... .+++.|...+......+ ......++..+..- ..+..|.++++.
T Consensus 461 ~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 461 LYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 666664333 555556666655433 24677777777777766 44555555554442 115677777777
Q ss_pred HHhcC
Q 047840 395 ISETG 399 (445)
Q Consensus 395 m~~~~ 399 (445)
....+
T Consensus 535 ~~~~~ 539 (552)
T KOG1550|consen 535 ASEED 539 (552)
T ss_pred HHhcC
Confidence 66543
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.51 E-value=12 Score=30.27 Aligned_cols=75 Identities=13% Similarity=0.029 Sum_probs=48.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCchhhhhHHHHHHHccCChHHHH
Q 047840 143 DFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY---HLEKNVILATAVVDMYSKCGHVHSAL 218 (445)
Q Consensus 143 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~ 218 (445)
.-+.|.+.|-++...+.--++.....+.. |....+.+++.+++....+. +-.+|+.++.+|+..+.+.|+++.|.
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34667777777766554434444444444 44467778888887777653 22567777778888888777777764
No 348
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.37 E-value=25 Score=30.92 Aligned_cols=121 Identities=12% Similarity=0.206 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--CC----cHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHHhcCCh
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTH--AK----MVRDGLNLFENMSAVYGVEP--QLEHYACVVDLLARAGMV 316 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 316 (445)
+++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|++.+.+-. +-.++..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888887777666553332222 22 34567788888887754432 33344444322 33332
Q ss_pred ----HHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCC--hHHHHHHHHHHHHhCCC
Q 047840 317 ----EEAEKFIEEKMGGLGGGDA--NVWGALLSACRIYGK--IEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 317 ----~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 367 (445)
+.++.+|+.+.+.|+..+- .....++..+-.... ...+.++++.+.+.+..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 4566677777776655432 233333332221111 34667777777776654
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.71 E-value=7.1 Score=31.97 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCCHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL--GGGDANVWGALLS 343 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 343 (445)
|.+..++.+.+.+.+.+++...+.-.+. -+.+..+-..+++.+|-.|++++|..-++-..... ..+-...|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455667788889999999988877753 24455666778899999999999998877664332 2344566777776
Q ss_pred H
Q 047840 344 A 344 (445)
Q Consensus 344 ~ 344 (445)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 5
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.45 E-value=2.5 Score=24.55 Aligned_cols=27 Identities=22% Similarity=0.120 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 373 VLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
..++.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457888888999999998888887543
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.36 E-value=5.3 Score=33.18 Aligned_cols=118 Identities=10% Similarity=-0.017 Sum_probs=74.1
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHcCCh
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEH-YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANV-WGALLSACRIYGKI 351 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~ 351 (445)
|.....+..|...|.+.. -+.|+..+ |+.=+.++.+..+++.+..--.+.++. .||..- .-.+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence 666677888888887777 44677644 456666777888888888777776643 455543 34445566677888
Q ss_pred HHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 352 EVGNRVWRKLAEMGIT-----DFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
++|+..+.++.++... ...+...|..+--..-...+..++.+...
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 9999999888663321 23344445444433344445555555443
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=84.26 E-value=6.1 Score=37.40 Aligned_cols=99 Identities=11% Similarity=0.029 Sum_probs=62.7
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQ--LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
-.|+...|...+...... .|- ....-.|.....+.|...+|-.++.+.+... ...+.++..+.+++....+++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHH
Confidence 346677777776665532 332 1223344555556666677777776655444 4455667777777777778888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
|++.|+.+.+.+|.++.+-..|...
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 8888888888887777666655443
No 353
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.15 E-value=1.2 Score=40.77 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=71.8
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY-ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
+..+...+.++.|..++.++.+ +.||...| ..=..++.+.+++..|+.=+..+++.. +-....|..=..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHH
Confidence 4455667888889999988884 47765444 333367788888888888777776655 344556666667778888
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHH
Q 047840 350 KIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.+.+|...|+......|+++.+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHH
Confidence 888999999998888888775443
No 354
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.04 E-value=26 Score=29.89 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=49.2
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCCC---------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISNK---------------DAGAWNAMISGVAMNGDAKKSLELFDRMVKS-GTQPTET 265 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~ 265 (445)
..|...|...|.+.+...+++++... -...|..=|+.|-...+-.+...+|++...- ..-|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 34555566666666666665554321 1235666677777777777777777765442 2334444
Q ss_pred HHHHHHHHh-----hcCCcHHHHHHHHHHhH
Q 047840 266 TFVAVLTTC-----THAKMVRDGLNLFENMS 291 (445)
Q Consensus 266 ~~~~l~~~~-----~~~~~~~~a~~~~~~~~ 291 (445)
... +++-| .+.|++++|..-|=++-
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 433 33333 35677777765444443
No 355
>PRK10941 hypothetical protein; Provisional
Probab=83.69 E-value=20 Score=30.98 Aligned_cols=68 Identities=12% Similarity=-0.151 Sum_probs=54.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++..++.-|+++.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 445667888999999999999888766 66677777777788899999999999999999888876443
No 356
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.26 E-value=29 Score=32.35 Aligned_cols=103 Identities=12% Similarity=0.030 Sum_probs=68.9
Q ss_pred HHHccCChHHHHHHhhcCCC---C---------ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCCH---
Q 047840 207 MYSKCGHVHSALSVFEGISN---K---------DAGAWNAMISGVAMNGDAKKSLELFDRMVK-------SGTQPTE--- 264 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~--- 264 (445)
.+.-.|++.+|.+++....- + ....||.|.-.+.+.|.+..+..+|.+..+ .|++|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34556888888888754321 1 223456676667777777777777766553 3544432
Q ss_pred --------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 265 --------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 265 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
.+||. .-.|...|++-.|.+.|...... +..++..|-.|.++|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 23333 23466789999999999998874 46778899999888863
No 357
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.24 E-value=3.5 Score=25.16 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=24.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
.+.-++.+.|++++|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567788899999999999999999987643
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.02 E-value=6.9 Score=32.04 Aligned_cols=75 Identities=13% Similarity=0.013 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYN 377 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 377 (445)
|.+.-++.+.+.+++.+|+...+.-++.. +.|...-..+++.++-.|++++|..-++-.-++.|.+ ...|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455667778899999999988877666 6677778888999999999999999999888888863 334555543
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.14 E-value=3.7 Score=23.88 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=17.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC
Q 047840 134 IMAAYSRISDFKEVLSLFRQMQEVG 158 (445)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~~~~~~ 158 (445)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5667777777777777777776543
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.35 E-value=16 Score=25.71 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 047840 105 DGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166 (445)
Q Consensus 105 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 166 (445)
..+...|++++|..+.+.+.-||...|.+|.. .+.|..+.+..-+.+|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 45667788888888888777777777766543 45666666666666666655 4444443
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.16 E-value=15 Score=30.48 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCh-------HHHHHHHHHHHHhC--C----CCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 336 NVWGALLSACRIYGKI-------EVGNRVWRKLAEMG--I----TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~-------~~a~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
..+..+...|...|+. ..|.+.|+++.+.. | +.......++....+.|+.++|.+.|.++...+-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3455555666666664 34555555555422 2 1345666788999999999999999999886543
No 362
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=79.88 E-value=67 Score=31.88 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=31.3
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHH--HHHhcCChHHHHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVD--LLARAGMVEEAEKFIE 324 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~~~~g~~~~A~~~~~ 324 (445)
-.+++..|...++.+.....-.|+ ...+..++. .+-..|+++.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457898999999888864332222 122222222 2345799999999997
No 363
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.11 E-value=29 Score=29.83 Aligned_cols=83 Identities=8% Similarity=-0.004 Sum_probs=40.5
Q ss_pred HHHHHccCChHHHHHHhh----cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-----h
Q 047840 205 VDMYSKCGHVHSALSVFE----GISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC-----T 275 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~-----~ 275 (445)
|++++..|+|.++....- .-.+-.+.....-|-.|.+.+.+..+.++-..-....-.-+...|..++..| .
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666554332 2222233344444555666666666666555544432222233344444333 3
Q ss_pred cCCcHHHHHHHH
Q 047840 276 HAKMVRDGLNLF 287 (445)
Q Consensus 276 ~~~~~~~a~~~~ 287 (445)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666555
No 364
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.94 E-value=38 Score=28.53 Aligned_cols=51 Identities=4% Similarity=-0.230 Sum_probs=21.9
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
++...|++-++++--.+++...|.+..+|..-+.+.+..-+.++|..-|..
T Consensus 239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~ 289 (329)
T KOG0545|consen 239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQK 289 (329)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444443333
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.68 E-value=31 Score=29.64 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=47.2
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH---
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEV--GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS--- 209 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 209 (445)
|.+++..++|.+++...-+.-+. .++| .....-|-.|.+.+.+..+.++-....+..-.-+..-|.++++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56777777777777655444321 2333 3344444456677777777766666554322223333555555443
Q ss_pred --ccCChHHHHHHh
Q 047840 210 --KCGHVHSALSVF 221 (445)
Q Consensus 210 --~~g~~~~a~~~~ 221 (445)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777776665
No 366
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=77.65 E-value=35 Score=27.45 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=86.3
Q ss_pred cCCCCCcccHHHHHHHhhhcC----CchhHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHHHHHHHhccCCCC
Q 047840 24 MGFEPNNYTFPPLIKACVILG----PLENFGMFVHAHVVKFGFGEDPF----VVSSLLEFYSLVHKMGTARALFDKSPDR 95 (445)
Q Consensus 24 ~~~~p~~~~~~~ll~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 95 (445)
.|..++...++.++..+.+.. +.+ .+..+-.+....++.++-. ....-+..|-..||+.+.-.+|-.+..
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~-~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~- 79 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEID-AVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM- 79 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-
Confidence 355667777777776664443 222 3333333333344433322 222223445555666655555433221
Q ss_pred ChhhHHHHHHHHHcCCChHH-----HHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFEN-----ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVL 170 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 170 (445)
++-+.++++. |..+.++.++...+.|.....+-++.-+.+++.+.+-- .+-.+++
T Consensus 80 ----------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m 139 (233)
T PF14669_consen 80 ----------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLM 139 (233)
T ss_pred ----------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHH
Confidence 1111111111 22233333334445566666655555555554443311 1223456
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCC--------------CchhhhhHHHHHHHccCChHHHHHHhh
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLE--------------KNVILATAVVDMYSKCGHVHSALSVFE 222 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 222 (445)
-.|.+..++.++.++++.+.+..+. +--.+.|.....+.++|..|.|..+++
T Consensus 140 ~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 140 YSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 6677777888888887777654322 222344555556666666666666665
No 367
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.52 E-value=7.2 Score=26.00 Aligned_cols=44 Identities=16% Similarity=-0.047 Sum_probs=25.7
Q ss_pred HcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCChHHHHH
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDF---STHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 390 (445)
...+.++|+..++++++..++.+ .++..++.+|...|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777666544422 233345556666666666665
No 368
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.46 E-value=29 Score=30.65 Aligned_cols=94 Identities=11% Similarity=-0.056 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLG-GG--DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
.|.-=.+-|.+..++..|...|.+-+.... .| +.+.|+.-..+-.-.|++..++.-...++..+|.+..+|..-+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 344445567888899999999998765531 23 346677777777788999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHH
Q 047840 379 YKEAGWDMEANKVRKLI 395 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m 395 (445)
+....++++|....+..
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999988777766544
No 369
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=77.05 E-value=19 Score=24.63 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=38.8
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. ..+..|..+++++...|.-+-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 345555555552 122222222222235577888888888888 77778888888887777655443
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.04 E-value=7.8 Score=25.84 Aligned_cols=46 Identities=9% Similarity=0.074 Sum_probs=18.4
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 321 (445)
..++.++|+..|....+...-.|+ -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444443111111 1223344444444444444443
No 371
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.34 E-value=66 Score=29.92 Aligned_cols=70 Identities=21% Similarity=0.114 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCCccc--HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHHHHHHhccC
Q 047840 18 YLDMLDMGFEPNNYT--FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPF--VVSSLLEFYSLVHKMGTARALFDKS 92 (445)
Q Consensus 18 ~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~ 92 (445)
++.+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+++..
T Consensus 18 v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~-----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 91 (413)
T PHA02875 18 ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE-----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG 91 (413)
T ss_pred HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH-----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence 344444565554432 223344445556555 233334455444322 1122344445566766666666543
No 372
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=76.33 E-value=70 Score=30.16 Aligned_cols=240 Identities=10% Similarity=0.041 Sum_probs=128.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccC------ChhHHHHHHHHHHHcC-C-CCchhhhhHHHHHHHccCCh-HHH
Q 047840 147 VLSLFRQMQEVGMKPNESGLVSVLTACAHLG------AITQGLWVHSYAKRYH-L-EKNVILATAVVDMYSKCGHV-HSA 217 (445)
Q Consensus 147 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~-~~a 217 (445)
...+|++... .-|+...+...|..|...- .+.....+++.....+ . +.....|..+.-+++..+.. ..|
T Consensus 301 ~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 3445555443 2345555656666554322 2333444555544432 2 22344555555555555443 334
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHhc-CChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc-HHH-HH-HHHHHhHH
Q 047840 218 LSVFEGISNKDAGAWNAMISGVAMN-GDAKK-SLELFDRMVKSGTQPTETTFVAVLTTCTHAKM-VRD-GL-NLFENMSA 292 (445)
Q Consensus 218 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~-a~-~~~~~~~~ 292 (445)
..+..+....+...|..-++..... .+++- -.+++......-..+....++... .++ +.. .. .++..+..
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 4444455555666665555544422 12221 122233333321222223333322 121 111 11 12222222
Q ss_pred hhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHhCCCCc
Q 047840 293 VYGVEPQLEHY-ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI--YGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 293 ~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
-..|+..++ +.+++.+.+.|-..+|..++..+.... +|+...+..+++.-.. .-+...+..+++.+...-..++
T Consensus 454 --~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~ 530 (568)
T KOG2396|consen 454 --VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADS 530 (568)
T ss_pred --hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCCh
Confidence 234555444 567788888999999999999988776 7888888888764322 2247788889998887433777
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..|......-...|..+.+-.++.+..
T Consensus 531 ~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 531 DLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHHhhccCCCcccccHHHHHHH
Confidence 888877777677888887777655543
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=76.27 E-value=31 Score=26.03 Aligned_cols=28 Identities=14% Similarity=-0.027 Sum_probs=14.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
|.-++.+.++++++.++.+..++..|++
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3334455555555555555555555544
No 374
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=76.00 E-value=9.1 Score=26.11 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=20.6
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHH
Q 047840 78 LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENA 116 (445)
Q Consensus 78 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 116 (445)
..|+.+.|.+++..+. +.+..|..++.++-..|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555555555 5555555555555555554433
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=75.99 E-value=53 Score=28.66 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHhcCChHHH
Q 047840 300 LEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A 319 (445)
..+|..|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34677777778777776543
No 376
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.91 E-value=1.6e+02 Score=33.98 Aligned_cols=145 Identities=10% Similarity=0.032 Sum_probs=85.5
Q ss_pred HHhhhcCCchhHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhcCCHHHHHHHhcc-CCCCChhhHHHHHHHHHcCCChH
Q 047840 38 KACVILGPLENFGMFVHAHVVKFGF--GEDPFVVSSLLEFYSLVHKMGTARALFDK-SPDRDVVTWTTMVDGYGKMGDFE 114 (445)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 114 (445)
.+-.+.+.+. .|...++.-..... .-....+..+...|...+++|....+... .-.|+ ...-|-.....|+++
T Consensus 1391 ~aSfrc~~y~-RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1391 RASFRCKAYA-RALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHhhHHHH-HHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHH
Confidence 3445566666 66666665211000 11123344455588888888877776553 22222 233444566789999
Q ss_pred HHHHHhccCCC--CC-hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCChhHHHHHHH
Q 047840 115 NARELFEKMPE--RN-AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLV-SVLTACAHLGAITQGLWVHS 187 (445)
Q Consensus 115 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~ 187 (445)
.|...|+.+.+ |+ ..+++-++......|.++.++...+..... ..+....++ .=+.+--+.++++.......
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 99999999886 33 556887887777888888887766655443 233333333 23344466777777666554
No 377
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.74 E-value=1.1e+02 Score=32.14 Aligned_cols=253 Identities=9% Similarity=-0.028 Sum_probs=110.8
Q ss_pred HHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc
Q 047840 118 ELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN 197 (445)
Q Consensus 118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 197 (445)
.+...+..+++......+..+.+.+.. .+...+..... .++...-...+.++...+........+..+.+. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 344444456666666666666655543 34444444443 223333334444443332211112222223222 34
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 277 (445)
..+-...+..+...+.. ....+...+..+|...-...+.++...+..+. +.... ..++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 44444444444433211 11233444455565555555555555444322 11111 233444444555555554
Q ss_pred CcHHH-HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 278 KMVRD-GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 278 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
+..+. +...+..+.. .++...-...+.++...|..+.+...+..+++ .+|..+-...+.++...+. +++..
T Consensus 770 ~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 770 GAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred ccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHH
Confidence 44322 2333434432 34555556666666666665544333333332 2344444555555555543 34444
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
.+..+++ +| +...-...+.++.+.+....+...+...
T Consensus 842 ~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 842 ALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 4444442 11 2333444444554442233444444443
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.67 E-value=18 Score=31.24 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
+++.....|..+|.+.+|.++.++.+..+ +.+...+-.++..+...|+--.+..-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556677889999999999999988777 77888889999999999987777777666644
No 379
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=75.62 E-value=8 Score=19.96 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=16.6
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 349 GKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
|+.+.+..+|++++...|.++..|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 3456666666666666665555555444
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.21 E-value=21 Score=26.36 Aligned_cols=59 Identities=14% Similarity=0.245 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 247 KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 247 ~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+..+-++.+..-.+-|++.....-+++|.+.+++..|..+|+-++.+ +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 44455555666677888888888888888888888888888888764 333333454444
No 381
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.62 E-value=26 Score=24.31 Aligned_cols=31 Identities=29% Similarity=0.234 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
|...--.+...+...|++++|++.+-+++..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344445555555666666666655555544
No 382
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.57 E-value=42 Score=26.79 Aligned_cols=77 Identities=14% Similarity=0.072 Sum_probs=37.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYG-----------KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 386 (445)
+|..-|++.+..+ |....++..+..++...+ .+++|.+.|+++.+.+|.+. .|..-+... .
T Consensus 53 dAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~ 124 (186)
T PF06552_consen 53 DAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------A 124 (186)
T ss_dssp HHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------H
T ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------H
Confidence 3344444444333 223355555665554433 25666677777777888765 454444443 2
Q ss_pred HHHHHHHHHHhcCCcc
Q 047840 387 EANKVRKLISETGMKK 402 (445)
Q Consensus 387 ~A~~~~~~m~~~~~~~ 402 (445)
.|-++..++.+.+...
T Consensus 125 kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 125 KAPELHMEIHKQGLGQ 140 (186)
T ss_dssp THHHHHHHHHHSSS--
T ss_pred hhHHHHHHHHHHHhhh
Confidence 4666666666655443
No 383
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.29 E-value=65 Score=28.83 Aligned_cols=117 Identities=14% Similarity=0.077 Sum_probs=70.6
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---cCChHHHHHH
Q 047840 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI---YGKIEVGNRV 357 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~ 357 (445)
+.-+.+++++.+. .+.+......++..+.+..+.++..+-+++++... +-+...|...+..... .-.++....+
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4445667776653 23445555666777777777777777777776655 4466777777765543 2245566666
Q ss_pred HHHHHHh------CC-----CC-------chhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 358 WRKLAEM------GI-----TD-------FSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 358 ~~~~~~~------~~-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
|.+.++. +. +. ...+..+......+|-.+.|..+++.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6555441 10 00 11233445556677888888888888887765
No 384
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.86 E-value=52 Score=27.57 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=32.7
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH---HHH---HHHHcCChHHHHHHHHHHHHhCCC
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGA---LLS---ACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~---~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.-...+++.+|+.+|+++....+..+..-|.. ++. ++....+.-.+...+++-.+.+|.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 34456777888888887765543333332221 111 112224555666777777777775
No 385
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=73.10 E-value=24 Score=28.73 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
|++.++..++.++...|+.++|.+..+++....|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444455445555555555555555555544444
No 386
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.98 E-value=61 Score=27.93 Aligned_cols=29 Identities=17% Similarity=-0.046 Sum_probs=19.9
Q ss_pred CchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 196 KNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 196 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.++.....+...|.+.|++..|+..|-.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 46677788888888888888887766443
No 387
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.96 E-value=30 Score=24.43 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
.++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+.+.-||...|.++-. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45566565555544311 22222223445778899999999999888888888877654 4667777777777777776
Q ss_pred CCCCCHHHH
Q 047840 259 GTQPTETTF 267 (445)
Q Consensus 259 ~~~p~~~~~ 267 (445)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 3444444
No 388
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.83 E-value=93 Score=29.96 Aligned_cols=169 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCC----------CCChhHHHHHHHHHHhcCChHHHHHHHHHH-----------------
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGV----------EPQLEHYACVVDLLARAGMVEEAEKFIEEK----------------- 326 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------- 326 (445)
+.+...++++...|......+.. +-.+.+.-.+.+.+...|+.+-|..++++.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred ---hcCCCCCCHHHHHHH---HHHHHHcCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHH-HcCChHHHHHHHHHH-Hh
Q 047840 327 ---MGGLGGGDANVWGAL---LSACRIYGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYK-EAGWDMEANKVRKLI-SE 397 (445)
Q Consensus 327 ---~~~~~~~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m-~~ 397 (445)
+.-..+-|...|.++ +..+.+.|-+..|.+..+-+.+++|. ||.....+++.|+ ++.++.--+++++.. ..
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q ss_pred cCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHHHHHhcccCC
Q 047840 398 TGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKMSNLV 445 (445)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (445)
..+...|.... +--+--|................+.+-.++...|
T Consensus 408 n~l~~~PN~~y---S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 408 NKLSQLPNFGY---SLALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred ccHhhcCCchH---HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.40 E-value=28 Score=33.28 Aligned_cols=133 Identities=12% Similarity=0.008 Sum_probs=88.8
Q ss_pred CCCHHHHHHHHHHhhcC--CcHHHHHHHHHHhHHhhCCCCChhHHHHH--HHHHH-hcCChHHHHHHHHHHhcCCCCCCH
Q 047840 261 QPTETTFVAVLTTCTHA--KMVRDGLNLFENMSAVYGVEPQLEHYACV--VDLLA-RAGMVEEAEKFIEEKMGGLGGGDA 335 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~ 335 (445)
.|+..+...++.-.... ...+-+-.++-.|. +|+...|-+| ...|. -.|+...|...+....-.......
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 35566555554443321 22344444555554 3444444332 23343 468999999988776533212223
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+....|.+...+.|....|-.++.+.+.+....|.++..++++|....+.+.|++.|+...+.
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 445667777888888899999999999887778889999999999999999999988877654
No 390
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.15 E-value=64 Score=27.81 Aligned_cols=27 Identities=19% Similarity=-0.075 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhccC
Q 047840 66 PFVVSSLLEFYSLVHKMGTARALFDKS 92 (445)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 92 (445)
+..+..+...|.+.|++.+|...|-..
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 344445555555555555555544433
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.01 E-value=21 Score=29.02 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=40.1
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
....+.+......+.+.+.....|++.+|..++.++...|+.++|.++.+++...
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555555555555554444455789999999999999999999999988888644
No 392
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=71.97 E-value=12 Score=32.43 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=58.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 295 GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA-LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.+..|+..|...+....+.|.+.+...++.+....+ |.|+..|-. --.-+...++++.+..+|.+.++..|++|..|.
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 334566677766666666777888888888887776 666666643 223356678889999999999998888888776
Q ss_pred HHHH
Q 047840 374 LSYN 377 (445)
Q Consensus 374 ~l~~ 377 (445)
...+
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 5443
No 393
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.90 E-value=20 Score=25.02 Aligned_cols=52 Identities=8% Similarity=-0.074 Sum_probs=29.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCC----C-----chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 346 RIYGKIEVGNRVWRKLAEMGIT----D-----FSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+.|++..|.+.+.+..+.... . ..+...++......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666666655555552221 1 12333456667777777777777776654
No 394
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.62 E-value=1.3e+02 Score=31.08 Aligned_cols=164 Identities=12% Similarity=0.000 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhcCCcH--HHHHHHHHHhHHhhCCCCC--hhHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG---TQPTETTFVAVLTTCTHAKMV--RDGLNLFENMSAVYGVEPQ--LEHY 303 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~--~~~~ 303 (445)
-|..|+..|...|+.++|+++|.+..+.. ..--...+..++..+.+.+.. +-.+++-...... .|. ...+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~---~p~~gi~If 582 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK---NPEAGIQIF 582 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc---Cchhheeee
Confidence 47778888888888888888888776631 000111222234433333332 3333333332221 110 0000
Q ss_pred H------------HHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC--------ChHHHHHH--HH--
Q 047840 304 A------------CVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG--------KIEVGNRV--WR-- 359 (445)
Q Consensus 304 ~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~--~~-- 359 (445)
. .-+-.|......+-+..+++.+....-.++....+.++..|+..= +.+++.+. -+
T Consensus 583 t~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl 662 (877)
T KOG2063|consen 583 TSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKL 662 (877)
T ss_pred eccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHH
Confidence 0 112234556677778888888876654566777777777665421 22233333 11
Q ss_pred -HHHH----hCC-------CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 360 -KLAE----MGI-------TDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 360 -~~~~----~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+.+ ..| +....|...+..+.+.|+.++|+.++-....
T Consensus 663 ~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 663 LDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1221 111 1234566667778899999999997766553
No 395
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.26 E-value=1.2e+02 Score=30.42 Aligned_cols=23 Identities=9% Similarity=-0.169 Sum_probs=14.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 047840 375 SYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+..+...|+..+|...+..+.+
T Consensus 413 ra~~L~~~g~~~~a~~ew~~~~~ 435 (644)
T PRK11619 413 RVRELMYWNMDNTARSEWANLVA 435 (644)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 34456666777777776666554
No 396
>PRK13342 recombination factor protein RarA; Reviewed
Probab=70.45 E-value=94 Score=29.04 Aligned_cols=43 Identities=23% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHHHHHHHh---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047840 131 WSAIMAAYSR---ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173 (445)
Q Consensus 131 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 173 (445)
+..++.++.+ .++.+.|+..+..|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444444444 467888888888888877666654444444443
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.99 E-value=35 Score=26.08 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCh
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 385 (445)
+.|.++.+-| | ...............|++..|.++.+.++..+|++...-...+.+|.+.|.-
T Consensus 58 ~~A~~~v~l~---G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 58 EEAKRYVELA---G---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHT---T---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---C---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 5566666666 4 2333444556677889999999999999999999988888888888776643
No 398
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=69.60 E-value=49 Score=25.40 Aligned_cols=81 Identities=10% Similarity=0.155 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCchhhhhHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVG-----MKPNESGLVSVLTACAHLGA-ITQGLWVHSYAKRYHLEKNVILATAV 204 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 204 (445)
.|.++......+++...+.+++.+.... -..+...|.+++.+.++... --.+..+|..+++.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5666666666777777777766663311 02245567777777766555 33455777777777777777777777
Q ss_pred HHHHHcc
Q 047840 205 VDMYSKC 211 (445)
Q Consensus 205 ~~~~~~~ 211 (445)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 399
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.47 E-value=20 Score=31.15 Aligned_cols=59 Identities=17% Similarity=0.121 Sum_probs=39.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccE
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 408 (445)
.+.|+.++|..+|+.++.+.|.++.+...++......++.-+|..++-+ .+...|+.+-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~----ALtisP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK----ALTISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe----eeeeCCCchH
Confidence 4567777888888888888887777777777766666666677666643 2334455444
No 400
>PRK13342 recombination factor protein RarA; Reviewed
Probab=68.74 E-value=1e+02 Score=28.79 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=14.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCC
Q 047840 242 NGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
.++++.|+.++..|.+.|..|.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3566667777777766665554
No 401
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.61 E-value=37 Score=23.65 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=32.9
Q ss_pred HhcCChHHHHHHHHHHhc----CCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 311 ARAGMVEEAEKFIEEKMG----GLGGG----DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
.+.|++.+|.+.+.+..+ .+..+ -......+.......|+.++|...++++++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456777777655544432 22111 12333445566677888888888888888743
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.57 E-value=42 Score=24.25 Aligned_cols=27 Identities=11% Similarity=0.399 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477788888888888888888887765
No 403
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.94 E-value=81 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=20.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
+.+-..+.+++++|+..+.++...|+..+..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 34445566677777777777777766655443
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=67.48 E-value=13 Score=30.76 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=34.7
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
.+.++.+.|.+++.+....- +.....|-.+...-.+.|+++.|.+.+++.++.+|++
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566666666666665433 3445566666666666666666666666666666553
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.98 E-value=18 Score=35.45 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHHHH
Q 047840 380 KEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSF 438 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (445)
.+.|++.+|.+.+-.+.+.++.|. ..|..+-.....+.......=...+.+..++.+
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk--~f~~~LL~d~lplL~~~~~~f~~~~~~~ll~~L 562 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPK--SFWPLLLCDALPLLESDEVIFSSSDTYELLRCL 562 (566)
T ss_dssp -----------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcH--HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Confidence 345888899887777777766554 445443333333333322222344444444433
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.59 E-value=1.4e+02 Score=29.64 Aligned_cols=48 Identities=15% Similarity=-0.042 Sum_probs=35.6
Q ss_pred HHcCChHHHHHHHHHHHHhC---CC------CchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMG---IT------DFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~---~~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
+-.+++..|...++.+.+.. |+ .+..+...+..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45688989999999888732 11 24455566666777899999999997
No 407
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.63 E-value=98 Score=27.44 Aligned_cols=94 Identities=12% Similarity=-0.114 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCC-----Cc
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKM----GGLGGGDANVWGALLSA-CRIYGKIEVGNRVWRKLAEMGIT-----DF 369 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~-----~~ 369 (445)
...+......|++.|+.+.|.+.+++.. ..|.+-|+..+..-+.. |....-+.+-++..+.+.+.|.+ ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 3444555666777777777777665543 23545555444332222 22333334444444555555543 11
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
.+|. +.-+....++.+|-.+|-..
T Consensus 184 KvY~--Gly~msvR~Fk~Aa~Lfld~ 207 (393)
T KOG0687|consen 184 KVYQ--GLYCMSVRNFKEAADLFLDS 207 (393)
T ss_pred HHHH--HHHHHHHHhHHHHHHHHHHH
Confidence 1222 22334445666666655443
No 408
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.62 E-value=92 Score=27.12 Aligned_cols=54 Identities=13% Similarity=-0.034 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHcCCh
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEM-GIT-DFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 385 (445)
.++..+...++..++..+++.+-.++++..... .|. |.++|...+......|+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 344444444555555555555555555444443 232 445555555555555553
No 409
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=65.20 E-value=53 Score=24.18 Aligned_cols=83 Identities=17% Similarity=0.041 Sum_probs=47.2
Q ss_pred cCChHHHHHHHHHHhc--CCCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCCchhHH-
Q 047840 313 AGMVEEAEKFIEEKMG--GLGGG---------DANVWGALLSACRIYGKIEVGNRVWRKLAE-------MGITDFSTHV- 373 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~--~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~- 373 (445)
.|.+++|..-++...+ ..+|| |...+..|..++...|++++++..-+..+. +..+.-..|.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIa 101 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIA 101 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHH
Confidence 4555555555544322 13333 345566677788888888877766555544 3333333333
Q ss_pred ---HHHHHHHHcCChHHHHHHHHHH
Q 047840 374 ---LSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 374 ---~l~~~~~~~g~~~~A~~~~~~m 395 (445)
.-+.++...|+.++|...|+..
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3455778889999999877654
No 410
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.12 E-value=85 Score=26.57 Aligned_cols=166 Identities=9% Similarity=0.064 Sum_probs=83.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCT-HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
-++..+-+.|+++++...++++...+...+..--+.+-.+|- ..|....+++++..+.....-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 356677788999999999999988877777766666666653 234455566666666543211212 222333333322
Q ss_pred c------CChHHHHHHHHHHh-cCCCCCCHHH-HHHHHHH----HHHcC-------ChHHHHHHHHHHHH-----hCCCC
Q 047840 313 A------GMVEEAEKFIEEKM-GGLGGGDANV-WGALLSA----CRIYG-------KIEVGNRVWRKLAE-----MGITD 368 (445)
Q Consensus 313 ~------g~~~~A~~~~~~~~-~~~~~~~~~~-~~~l~~~----~~~~g-------~~~~a~~~~~~~~~-----~~~~~ 368 (445)
. .--.+...+++..+ .....+...+ |.-+-.- .+... -.+.|.+.|+++.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 1 00123333333311 0010111222 2211111 11111 23677777777765 44556
Q ss_pred chhHHHH----HHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 369 FSTHVLS----YNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 369 ~~~~~~l----~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
|.-.... +-.|-..|+.++|.++.+..-+..+
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 5433222 2235668999999998888766544
No 411
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.62 E-value=47 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVK 257 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 257 (445)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777765
No 412
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.58 E-value=1.7e+02 Score=29.88 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHh
Q 047840 72 LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFK 145 (445)
Q Consensus 72 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (445)
+=+.|...|+++.|.++-..-+..-..++..-...|.+.+++..|-+++.++. ..|..+.--+....+.+
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~ 433 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER 433 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH
Confidence 34567888999999888554411111233444556777888888888888773 33444444455555555
No 413
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.49 E-value=87 Score=26.44 Aligned_cols=118 Identities=13% Similarity=0.077 Sum_probs=78.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-HHHHHHHhcCCh
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETT-FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAGMV 316 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~ 316 (445)
|....+++.|+..|.+.+. +.|+..+ |+.-+-++.+..+++.+..--.+.. .+.||..--. .+..++.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4455678899998877776 4677644 4555667777888888776666665 4467654333 445566778889
Q ss_pred HHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 317 EEAEKFIEEKM----GGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 317 ~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
++|+..+.+.. ...+++-...+..|..+--..=...+..++.++.
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999988863 3355566677787777755555555666655554
No 414
>PRK12798 chemotaxis protein; Reviewed
Probab=63.64 E-value=1.2e+02 Score=27.92 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
.|..+...-.-.|+.+-|...-.+
T Consensus 259 lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 259 LYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHH
Confidence 444444444444554444444433
No 415
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.36 E-value=1.3e+02 Score=29.52 Aligned_cols=86 Identities=13% Similarity=0.058 Sum_probs=65.7
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD------ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.+..++..+.+.|..-... ++.| ......+.-+|....+.+.|.++++++.+.+|.++.+......+....|.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3567778888877653321 1222 23456677778888899999999999999999988888888889999999
Q ss_pred hHHHHHHHHHHHh
Q 047840 385 DMEANKVRKLISE 397 (445)
Q Consensus 385 ~~~A~~~~~~m~~ 397 (445)
-++|+........
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 9999998877653
No 416
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.30 E-value=1.1e+02 Score=26.71 Aligned_cols=68 Identities=12% Similarity=-0.062 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHh----cCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKM----GGLGGGDANVW-GALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
...+..+.+.|++.++.+.+.+++++.. ..|.+.|+... -.+.-.|....=.++.++..+.+++.|.+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 4445555666666666666655544432 22333333211 11112222222334555555555555543
No 417
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.27 E-value=1.3e+02 Score=27.88 Aligned_cols=209 Identities=11% Similarity=0.101 Sum_probs=110.4
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHhccCCCCChh--hHHHHHHHHHcCCC
Q 047840 37 IKACVILGPLENFGMFVHAHVVKFGFGEDPFV--VSSLLEFYSLVHKMGTARALFDKSPDRDVV--TWTTMVDGYGKMGD 112 (445)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 112 (445)
+...+..|+.+ . .+.+.+.|..|+... ..+.+...+..|+.+-+.-+++....++.. ...+.+...+..|+
T Consensus 6 L~~A~~~g~~~-i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 6 LCDAILFGELD-I----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHhCCHH-H----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 33445567666 3 344456677666432 334556667789998888887765544321 12234556677899
Q ss_pred hHHHHHHhccCCCC----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCChhHHHHHH
Q 047840 113 FENARELFEKMPER----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG--LVSVLTACAHLGAITQGLWVH 186 (445)
Q Consensus 113 ~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~ 186 (445)
.+.+..+++.-... +..-. ..+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~-- 153 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL-- 153 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH--
Confidence 98888888754321 11112 2233344566654 3444455565554321 1223444456677655444
Q ss_pred HHHHHcCCCCch---hhhhHHHHHHHccCChHHHHHHhhcCCCCChh---hHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047840 187 SYAKRYHLEKNV---ILATAVVDMYSKCGHVHSALSVFEGISNKDAG---AWNAMISGVAMNGDAKKSLELFDRMVKSGT 260 (445)
Q Consensus 187 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 260 (445)
+.+.|..++. .-. +.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+ +.+.+.+.|.
T Consensus 154 --Ll~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 154 --LIDHKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred --HHhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 4445543322 222 2334456678888777777654443221 1223444445566654 4445556676
Q ss_pred CCCH
Q 047840 261 QPTE 264 (445)
Q Consensus 261 ~p~~ 264 (445)
.++.
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 6654
No 418
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.10 E-value=67 Score=24.32 Aligned_cols=67 Identities=9% Similarity=0.163 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHhhcCC---cHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 261 QPTETTFVAVLTTCTHAK---MVRDGLNLFENMSAVYGVEPQ--LEHYACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
.++..+--.+..++.+.. +..+.+.+++.+.+. . .|+ ....--|.-++.+.+++++++++++.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-A-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-c-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344444444555555443 344555666666641 1 222 222223444566667777777776666544
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.17 E-value=25 Score=22.24 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=7.5
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 047840 307 VDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~ 325 (445)
+.+|...|++++|.+++++
T Consensus 30 I~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3344444444444444433
No 420
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.26 E-value=1.2e+02 Score=26.55 Aligned_cols=77 Identities=14% Similarity=-0.048 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC----------
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG---------- 383 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 383 (445)
.|...+.++...+ +......+...|.. ..+.++|...|.++.+.+. ......+. .+...|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~ 246 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLT 246 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcc
Confidence 5666666555444 33333333333322 2255666666666666555 33333444 444433
Q ss_pred -----ChHHHHHHHHHHHhcCC
Q 047840 384 -----WDMEANKVRKLISETGM 400 (445)
Q Consensus 384 -----~~~~A~~~~~~m~~~~~ 400 (445)
+...|...+......+.
T Consensus 247 ~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 247 AAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred cccCCCHHHHHHHHHHHHHcCC
Confidence 55566666666655554
No 421
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=59.29 E-value=1.3e+02 Score=26.73 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhCCC
Q 047840 353 VGNRVWRKLAEMGIT 367 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~ 367 (445)
.|.+.+.++.+..|.
T Consensus 380 ~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPH 394 (556)
T ss_pred HHHHHHHHHhhcCCC
Confidence 355666666666665
No 422
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=59.15 E-value=2e+02 Score=28.90 Aligned_cols=189 Identities=11% Similarity=0.082 Sum_probs=97.2
Q ss_pred HHHHHHHHHcCCCCc---hhhhhHHHHHHHccCChHHHHHHhhcCCC-CCh----------hhHHHHHHHHHhcCChHHH
Q 047840 183 LWVHSYAKRYHLEKN---VILATAVVDMYSKCGHVHSALSVFEGISN-KDA----------GAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~~a 248 (445)
..++.+|.+.-..|+ ..+...++-.|....+++...++.+.+.+ ||. ..|.-.++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 345566655433333 33445566667777777777777766544 211 1222222222345677778
Q ss_pred HHHHHHHHHc--CCCCCHHH-----HHHHH--HHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC-hHH
Q 047840 249 LELFDRMVKS--GTQPTETT-----FVAVL--TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM-VEE 318 (445)
Q Consensus 249 ~~~~~~m~~~--~~~p~~~~-----~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 318 (445)
+...-.+.+. .+.||... |.-+. +.|...+..+.|..+|++.- .+.|+...--.+...+...|. ++.
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccc
Confidence 7777666553 25566432 32222 23556677788888887776 446665442222222222332 222
Q ss_pred HHHH------HHHHh-cCCCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 319 AEKF------IEEKM-GGLGGGDANVWG---ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 319 A~~~------~~~~~-~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
..++ +..++ ++|--.....|. ..+.+-.-.+++.+|++.-+.|.++.|+....-..
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~ 405 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKST 405 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHH
Confidence 2221 12222 112111111111 22344455689999999999999999886544333
No 423
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=58.69 E-value=95 Score=24.97 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhHHH-----HHHHHHHhcCChHHHHHHHHHHh
Q 047840 280 VRDGLNLFENMSAVYGVEPQ-LEHYA-----CVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
++.|..+|+.+.+....+-+ ..... ..+-.|.+.|.+++|.+++++..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 56677777766654221100 11111 12234556666666666666654
No 424
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.22 E-value=63 Score=22.78 Aligned_cols=52 Identities=17% Similarity=0.015 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
+..+.++++...+....+-....|.-.|.+.|+.+.|.+-|+.=....|++.
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 3344555555443332223333445557777777777777777777777654
No 425
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.53 E-value=25 Score=22.29 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
|..-...++.++...|++++|.++++++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444556666666666666666655543
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.52 E-value=57 Score=27.86 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=8.0
Q ss_pred hhcCCcHHHHHHHHHHh
Q 047840 274 CTHAKMVRDGLNLFENM 290 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~ 290 (445)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 44444444444444444
No 427
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.84 E-value=26 Score=32.49 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=72.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhc
Q 047840 236 ISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV-LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARA 313 (445)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 313 (445)
+..+...+.++.|..++.+.++. .||...|-.. ..++.+.+++..|..=+..+.+. .|+ ...|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 45566778999999999999885 6766655443 36788999999998888777754 343 23333333455566
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 314 GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 314 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
+.+.+|...|+.... +.|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 778888888887763 45777766666666643
No 428
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.51 E-value=1.3e+02 Score=25.87 Aligned_cols=127 Identities=8% Similarity=0.068 Sum_probs=89.4
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhH-HHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH-HH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEH-YACVVDLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE-VG 354 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a 354 (445)
.....|+++-+.+... .|--.| |.---..+.. ..++.+=++.++++.+.+ +.|-.+|..--......|+.. .-
T Consensus 57 E~S~RAl~LT~d~i~l---NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRL---NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccCHHHHHHHHHHHHh---CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCcccch
Confidence 4455667777766643 333222 2111111111 234677778888888776 678777776555556667776 77
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccE
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSV 408 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 408 (445)
+++.+.|+..+..+-.+|..--+++...+.++.-+.+..+|.+..+..++.+..
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 889999999888888889999999999999999999999999999988877544
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.37 E-value=85 Score=24.14 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 16 FCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 16 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
++.+.+.+.|.+++..- ..++..+...++.- .|..+++.+.+.++..+..|.-..++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~-sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHL-SAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCC-CHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455667787777663 45677777777766 799999999998877777665556677776664
No 430
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.73 E-value=2.2e+02 Score=28.33 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCC---CCChhhHHHHHHHHHhcCC-------HhHHHHHHHHHHHc
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMP---ERNAVSWSAIMAAYSRISD-------FKEVLSLFRQMQEV 157 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 157 (445)
..=.+|-.|.++|++++|.++..... ......+-..+..|....+ -++...-|++....
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 33456777889999999999984333 2344556666777765432 23555556655544
No 431
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=55.73 E-value=1.1e+02 Score=24.81 Aligned_cols=55 Identities=5% Similarity=0.224 Sum_probs=28.4
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCC--------------CCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGV--------------EPQLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+++-.|.+..+|.++.++++.+.+. .+ .+--...|.-...+.+.|.++.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el-~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHEL-QIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3444556666666666666666543 11 1222333444455555555555555555
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.23 E-value=28 Score=30.31 Aligned_cols=36 Identities=14% Similarity=0.311 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 166 (445)
|+..|....+.||+++|++++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 567788888888888888888888887765444444
No 433
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=54.59 E-value=31 Score=23.54 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=14.5
Q ss_pred CHHHHHHHhccCCCCChhhHHHHHHHHHcCCC
Q 047840 81 KMGTARALFDKSPDRDVVTWTTMVDGYGKMGD 112 (445)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 112 (445)
..+++.++++.+..+.+.+|..+..++-..|+
T Consensus 45 r~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 45 RRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 34444444444444444444444444444443
No 434
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.45 E-value=12 Score=27.92 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=22.9
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456667788888888888867765 66666543
No 435
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.79 E-value=91 Score=23.26 Aligned_cols=41 Identities=12% Similarity=0.012 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCC--CCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGI--TDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 353 ~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
.+.++|+.|...+. ..+..|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44445555444322 233344444444555555555555443
No 436
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=53.78 E-value=49 Score=20.18 Aligned_cols=32 Identities=6% Similarity=0.260 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGL 166 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 166 (445)
.+.-++.+.|++++|.+..+.+.+ +.|+..-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHH
Confidence 345567788888888888888777 35654433
No 437
>PRK09857 putative transposase; Provisional
Probab=53.77 E-value=1.3e+02 Score=26.59 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=38.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
.++.-....++.++-.++++.+.+..|........++.-+.+.|.-+++.++.++|...|+..
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 333333445555555666666655555444445566666666666667777888887777754
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.48 E-value=1.9e+02 Score=26.74 Aligned_cols=53 Identities=8% Similarity=0.132 Sum_probs=25.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHhh--cCCcHHHHHHHHHHhHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTET--TFVAVLTTCT--HAKMVRDGLNLFENMSA 292 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 292 (445)
+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33555666666666666554 333332 2333333332 23445555555555543
No 439
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.32 E-value=83 Score=22.66 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 047840 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQE 156 (445)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 156 (445)
+...|++++|+..=.....||...|.+|. -.+.|--+++...+.++..
T Consensus 50 LmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 50 LMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp HHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34445555553333333334544444332 2344555555555544443
No 440
>PF13934 ELYS: Nuclear pore complex assembly
Probab=52.31 E-value=1.4e+02 Score=25.06 Aligned_cols=111 Identities=12% Similarity=0.064 Sum_probs=68.2
Q ss_pred HHHHhcCCCChhhHHHHHHHH--HhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC--ChhhH
Q 047840 56 HVVKFGFGEDPFVVSSLLEFY--SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER--NAVSW 131 (445)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 131 (445)
.....++++.-. ..+.++ ...+++++|.+.+-...-+ ..-..-++.++...|+.+.|+.+++....+ +...-
T Consensus 69 Fa~~f~ip~~~~---~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~ 144 (226)
T PF13934_consen 69 FARAFGIPPKYI---KFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEAL 144 (226)
T ss_pred HHHHhCCCHHHH---HHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHH
Confidence 344556665433 344443 4568888998887544221 112235788888899999999999987653 33333
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047840 132 SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174 (445)
Q Consensus 132 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (445)
..++.. ..++.+.+|...-+...+.. ....+..++..+.
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 444444 67789999988776654421 1345555665555
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=52.23 E-value=1.7e+02 Score=25.86 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
.++|+.+...++.|.-..|.-+.-.+.+.=.+.+.+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 34555666666666666665555555555556666666666654
No 442
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.86 E-value=1.2e+02 Score=28.01 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHhccCCCCC----------------hhhHHHHHHHHHcCCChHHHHHHhccCCC-----------
Q 047840 73 LEFYSLVHKMGTARALFDKSPDRD----------------VVTWTTMVDGYGKMGDFENARELFEKMPE----------- 125 (445)
Q Consensus 73 ~~~~~~~g~~~~a~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 125 (445)
+..+....++.+-.+..+....|+ -.+...|++.++-.||+..|+++++.+.-
T Consensus 82 L~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~ 161 (404)
T PF10255_consen 82 LYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPA 161 (404)
T ss_pred HHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcc
Confidence 334445555665555555543321 12334455666666777777777666541
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 047840 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQM 154 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 154 (445)
-.+.+|-.+.-+|.-.+++.+|.+.|...
T Consensus 162 ~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 162 CHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334444555556666666666666554
No 443
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.82 E-value=20 Score=26.88 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=25.7
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047840 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTAC 173 (445)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 173 (445)
...+.|.-..|-.+|.+|++.|-+||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345567778889999999999988874 55666543
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.27 E-value=50 Score=19.56 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=22.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
.+.|-..++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777766666666554
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.15 E-value=44 Score=30.81 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGL-------GGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
.-.|++..+-.|++..|+++++.+.-.. ....+.++-.++-+|.-.+++.+|.+.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777777766541110 01123344455555666666666666666554
No 446
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=50.48 E-value=34 Score=28.52 Aligned_cols=57 Identities=12% Similarity=-0.035 Sum_probs=50.8
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
...+.++.+.+.+++.++.++-|.....|..++..-.++|+++.|.+.+++..+..-
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 345678999999999999999999999999999999999999999999998876543
No 447
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.94 E-value=1.4e+02 Score=24.14 Aligned_cols=38 Identities=8% Similarity=0.308 Sum_probs=24.3
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
+..|.+.|.+++|.+++++... .|+......-+....+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~~II~ 155 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHHHHHH
Confidence 3458888888888888888874 3554444444433333
No 448
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.22 E-value=2e+02 Score=25.70 Aligned_cols=80 Identities=9% Similarity=-0.060 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH---cCChHHHHHHH
Q 047840 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE---AGWDMEANKVR 392 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 392 (445)
.+.-+.+++++++.+ +.+...+..++..+.+..+.++..+-+++++...|.++..|...+..... .-.++....+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 356677888888876 67888899999999999999999999999999999999888877766554 23456666655
Q ss_pred HHHH
Q 047840 393 KLIS 396 (445)
Q Consensus 393 ~~m~ 396 (445)
.+..
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5544
No 449
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.09 E-value=49 Score=21.28 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=27.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
|+...++.+++.+++-.-.++++..+.+....| ..+..+|..-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 444555666666666666666666666666665 4455555555555544
No 450
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.48 E-value=1.2e+02 Score=22.68 Aligned_cols=86 Identities=8% Similarity=-0.004 Sum_probs=55.9
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGV----EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG-GDANVWGALLSACRI 347 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 347 (445)
.+-..+.......++++....+.- +-|..... +--.|++ ..+.+.++|..|..+++- .-+..|......+..
T Consensus 35 ~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~Rylk-iWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~ 111 (126)
T PF08311_consen 35 NYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLK-IWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEK 111 (126)
T ss_dssp HCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHH-HHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHH
T ss_pred HCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHH-HHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 344445556666677777665432 22333222 2223333 334999999999887654 456788999999999
Q ss_pred cCChHHHHHHHHHH
Q 047840 348 YGKIEVGNRVWRKL 361 (445)
Q Consensus 348 ~g~~~~a~~~~~~~ 361 (445)
.|++++|.++|+..
T Consensus 112 ~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 112 RGNFKKADEIYQLG 125 (126)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhh
Confidence 99999999999875
No 451
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=46.60 E-value=50 Score=28.86 Aligned_cols=38 Identities=29% Similarity=0.537 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV 268 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 268 (445)
-|+..|....+.|+.++|+.++++..+.|..--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 46678888888888888888888888888765444543
No 452
>PTZ00131 glycophorin-binding protein; Provisional
Probab=46.42 E-value=1.7e+02 Score=24.40 Aligned_cols=126 Identities=15% Similarity=0.172 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG----------------LVSVLTACAHLGAITQGLWVHSYAKRYHL 194 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 194 (445)
-..++.+++..-.+.+-+.+|-+.+.. ..|+... -..++.+++.-..+.+-..+|-+++....
T Consensus 115 egqimkawaadpeyrkh~~i~y~ilt~-tdpnde~errnadnkedltsadpegqimka~aadpeyrkhl~i~y~ilt~td 193 (413)
T PTZ00131 115 EGQIMKAWAADPEYRKHIEIFYKILTH-TDPNDEVERRNADNKEDLTSADPEGQIMKAWAADPEYRKHLEIFYKILTHTD 193 (413)
T ss_pred ccHHHHHHhcCHHHHHHHHHHHHHHcc-CCCchHhhhcccccccccccCCcchHHHHHHhcCHHHHHHHHHHHHHHccCC
Confidence 345667777666677777766665543 2333221 12344555554445555555544443321
Q ss_pred CCch---hhhhHHHHHHHccCChHHHHHHhhcCCC---C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047840 195 EKNV---ILATAVVDMYSKCGHVHSALSVFEGISN---K----DAGAWNAMISGVAMNGDAKKSLELFDRMVK 257 (445)
Q Consensus 195 ~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 257 (445)
+.+. .--..++.+|+..-.+.+-..+|.++.. | +...-..++.+++..-.+.+-+.+|-++..
T Consensus 194 pnd~tsadpegqimka~aadpeyrkh~~v~~~ilt~tdpndetsadpegqimka~aadpey~kh~~i~y~ilt 266 (413)
T PTZ00131 194 PNDDTSADPEGQIMKAWAADPEYRKHLEVFHKILTHTDPNDETSADPEGQIMKAWAADPEYLKHLEIFYKILT 266 (413)
T ss_pred CCCcccCCcchHHHHHHhcCHHHHHHHHHHHHHHccCCCCccccCCcchHHHHHHhcCHHHHHHHHHHHHHHc
Confidence 1111 1112344445544444444454444432 1 111223344444444444444455544443
No 453
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=45.94 E-value=93 Score=27.29 Aligned_cols=45 Identities=13% Similarity=0.224 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 231 AWNAMISGVAMNGDA-KKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
.|..++++---+.+- .-|...++ ...+|..|+.+++..|+.+-.+
T Consensus 296 vWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 296 VWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred eHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcCChHHHHH
Confidence 688877764333221 12222333 2346778999999999877543
No 454
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.46 E-value=2.4e+02 Score=25.77 Aligned_cols=87 Identities=7% Similarity=-0.136 Sum_probs=57.0
Q ss_pred ChhHHHHH---HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC-----Cc
Q 047840 299 QLEHYACV---VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR-IYGKIEVGNRVWRKLAEMGIT-----DF 369 (445)
Q Consensus 299 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~-----~~ 369 (445)
|...|.++ +..+.+.|-+..|.++.+-+......-|+......|+.|+ +.++++--+++.+........ -|
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP 178 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP 178 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence 44445444 4567788999999999988887774447777777777764 667787777777776542111 12
Q ss_pred hhHHHHHHHHHHcCCh
Q 047840 370 STHVLSYNIYKEAGWD 385 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~ 385 (445)
..-...+-++...++.
T Consensus 179 n~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 179 NFAFSIALAYFRLEKE 194 (360)
T ss_pred cHHHHHHHHHHHhcCc
Confidence 3444555566666666
No 455
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.13 E-value=1.4e+02 Score=22.96 Aligned_cols=82 Identities=6% Similarity=-0.042 Sum_probs=42.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhC----CCCChhHHHHHHHHHHhcCC-hHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYG----VEPQLEHYACVVDLLARAGM-VEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
.+.++......++......+++.+....+ -..+...|.+++.+..+... ---+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555555555555555432100 01234456666666644443 23345556666555566666667777
Q ss_pred HHHHHHc
Q 047840 342 LSACRIY 348 (445)
Q Consensus 342 ~~~~~~~ 348 (445)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666543
No 456
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.06 E-value=52 Score=28.73 Aligned_cols=50 Identities=14% Similarity=0.194 Sum_probs=25.4
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
.+.|+.++|..+|+..... .|+ +....-+....-..+++-+|-.+|-+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlal---aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL---APTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HhccchHHHHHHHHHHHhc---CCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 3567777777777766632 343 3333333333333445555555555543
No 457
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.77 E-value=1.1e+02 Score=26.33 Aligned_cols=52 Identities=19% Similarity=-0.016 Sum_probs=31.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.++...++++.|....++.+..+|.++.-..--+-+|.+.|...-|.+-+..
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 3455556666666666666666666655555556666666666666555544
No 458
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.71 E-value=33 Score=30.41 Aligned_cols=86 Identities=13% Similarity=0.034 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV 357 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 357 (445)
|.++.|++.|...+.. -++....|..-..++.+.++...|++=++.....+ +....-|-.-..+....|++++|...
T Consensus 128 G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHH
Confidence 4444444444444421 12222333333334444444444444444433222 11112222222333334445555555
Q ss_pred HHHHHHhCC
Q 047840 358 WRKLAEMGI 366 (445)
Q Consensus 358 ~~~~~~~~~ 366 (445)
|..+.+++.
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 444444443
No 459
>PRK12798 chemotaxis protein; Reviewed
Probab=44.22 E-value=2.7e+02 Score=25.89 Aligned_cols=224 Identities=15% Similarity=0.120 Sum_probs=136.4
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHH--HccCChHHHHHHhhcCCCC----ChhhHHHHHHH-H
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY--SKCGHVHSALSVFEGISNK----DAGAWNAMISG-V 239 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~-~ 239 (445)
...+-....-|++.-...++ ..+..++ .-+.++.+. .-.|+..++.+.+..+... ....+-.|+.+ .
T Consensus 85 ~Aa~iy~lSGGnP~vlr~L~----~~d~~~~--~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l 158 (421)
T PRK12798 85 DAALIYLLSGGNPATLRKLL----ARDKLGN--FDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNL 158 (421)
T ss_pred hHHHhhHhcCCCHHHHHHHH----HcCCCCh--hhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHH
Confidence 34444445566666544443 3433222 222333332 2368899999999888653 44466666654 4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-HHHHHHHhcC
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTE----TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-CVVDLLARAG 314 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g 314 (445)
....++.+|+++|+...-. -|-. ....--+-.....|+.+++..+-.....+|...|-..-|. .+..++.+.+
T Consensus 159 ~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~ 236 (421)
T PRK12798 159 MVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLD 236 (421)
T ss_pred hcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcc
Confidence 4567899999999988664 3432 2333334456788999998888877777665555443333 3334444443
Q ss_pred ---ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH-----HcCChH
Q 047840 315 ---MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK-----EAGWDM 386 (445)
Q Consensus 315 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~ 386 (445)
..+.-..++..| .-.--...|..+.+.-.-.|+.+-|.-.-+++..+... ...-...+..|. -..+++
T Consensus 237 d~~~~~~l~~~ls~~---d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~ 312 (421)
T PRK12798 237 DEIRDARLVEILSFM---DPERQRELYLRIARAALIDGKTELARFASERALKLADP-DSADAARARLYRGAALVASDDAE 312 (421)
T ss_pred ccccHHHHHHHHHhc---CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccC-CCcchHHHHHHHHHHccCcccHH
Confidence 334444445544 21223467888888888999999999999999986643 222223333333 346788
Q ss_pred HHHHHHHHHHhcCCcc
Q 047840 387 EANKVRKLISETGMKK 402 (445)
Q Consensus 387 ~A~~~~~~m~~~~~~~ 402 (445)
+|.+.+..+....+.+
T Consensus 313 ~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 313 SALEELSQIDRDKLSE 328 (421)
T ss_pred HHHHHHhcCChhhCCh
Confidence 8888888887776654
No 460
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.76 E-value=2.2e+02 Score=24.84 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=32.2
Q ss_pred HHHHHHHccCChHHHHHHhhcCCCC----C-------hhhHHHHHHHHHhcCChHHHHHHH
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISNK----D-------AGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~~----~-------~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.+.+-..+.+++++|+..+.++... | ..+...+...|...|+....-+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 3556677889999999999888754 2 123444555666666655544443
No 461
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=43.32 E-value=3.9e+02 Score=27.50 Aligned_cols=83 Identities=17% Similarity=0.111 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCC------------CChhHHHHHHHHHH
Q 047840 245 AKKSLELFDRMV-KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE------------PQLEHYACVVDLLA 311 (445)
Q Consensus 245 ~~~a~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~ 311 (445)
.++..+.+++.. ..|+..+......+... ..|++..|+.++++.....+-. .+...+..+++++
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 455566666553 34666677666655544 3688899999887766431111 1112222333322
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 047840 312 RAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~ 330 (445)
..|+..+++.+++++...|
T Consensus 257 ~~~d~~~~l~~~~~l~~~g 275 (830)
T PRK07003 257 AAGDGPEILAVADEMALRS 275 (830)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 2356666666666665555
No 462
>PRK09462 fur ferric uptake regulator; Provisional
Probab=43.31 E-value=1.5e+02 Score=22.78 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=36.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 154 MQEVGMKPNESGLVSVLTACAHL-GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4556776665443 344444433 45667888888888877666666655566666666643
No 463
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.18 E-value=4.3e+02 Score=27.95 Aligned_cols=256 Identities=13% Similarity=0.043 Sum_probs=156.2
Q ss_pred HHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHH
Q 047840 86 RALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESG 165 (445)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 165 (445)
..+.+.+..+++.+-..-+..+.+.+..+....+...+..++...-...+.++.+.+........+..+... +|...
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~V 700 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVV 700 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHH
Confidence 344445557788888888888888877655455556666677666666666665554322222334344432 56666
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCCh
Q 047840 166 LVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDA 245 (445)
Q Consensus 166 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 245 (445)
-...+.++...+..+ ...+.. +.+ .+|..+-...+.++.+.+..+. +...+..++...-...+.++...+..
T Consensus 701 R~~A~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 701 RAAALDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccc
Confidence 666667666544221 222222 222 4466666667777777665433 33445566777777777777777654
Q ss_pred HH-HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 246 KK-SLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 246 ~~-a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+. +...+..+.. .+|...-...+.++...|....+...+..+.. .++..+-...+.++...+. +++...+.
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~ 844 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALV 844 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHH
Confidence 43 3455555544 35677777888888888876655455555553 3566666667778887776 45556655
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
.+++ .|+..+-...+.++.+.+....+...+..+.+
T Consensus 845 ~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 845 EALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 5542 46777777777777776445677777777766
No 464
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.25 E-value=1.5e+02 Score=29.27 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCC------ChhhHHHHHHHHHcCCChH------HHHHHhccCC-CCChhhHHHHHHH
Q 047840 71 SLLEFYSLVHKMGTARALFDKSPDR------DVVTWTTMVDGYGKMGDFE------NARELFEKMP-ERNAVSWSAIMAA 137 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~-~~~~~~~~~l~~~ 137 (445)
+|+.+|...|++..+.++++..... -...+|..|+.+.+.|.++ .|.+.++... .-|..||..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6788888888888888887765432 2345677777777777653 2333333222 2355666666555
Q ss_pred HHh
Q 047840 138 YSR 140 (445)
Q Consensus 138 ~~~ 140 (445)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 444
No 465
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.22 E-value=2.5e+02 Score=24.90 Aligned_cols=88 Identities=11% Similarity=0.093 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHH----------cCCChHHHHHHh
Q 047840 51 MFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG----------KMGDFENARELF 120 (445)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~ 120 (445)
.++++.+...++.|.-+.+.-+.-.+.+.=.+...+.+++.+.... .-+..|+..|+ -.|++..-.+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-QRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-hhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4577888888888988888877777788888888999988876532 12444444443 358888888888
Q ss_pred ccCCCCChhhHHHHHHHHH
Q 047840 121 EKMPERNAVSWSAIMAAYS 139 (445)
Q Consensus 121 ~~~~~~~~~~~~~l~~~~~ 139 (445)
+.-+.-|+...-++.+.+.
T Consensus 342 Q~yp~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 342 QNYPTTDISKMLAVADSLR 360 (370)
T ss_pred hcCCCCCHHHHHHHHHHHH
Confidence 8877666665555544443
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.90 E-value=1.6e+02 Score=22.65 Aligned_cols=61 Identities=8% Similarity=0.083 Sum_probs=35.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 152 RQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 152 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
..+.+.|++++..- ..++..+...++.-.|..+++.+.+.+...+..|...-++.+...|-
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34455666655432 34555555555556677777777776655555554445566666664
No 467
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=41.82 E-value=1.5e+02 Score=25.61 Aligned_cols=63 Identities=16% Similarity=-0.116 Sum_probs=51.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
=..+.++++++.|....+..+..+ +.|+.-+.--.-+|.+.|...-|.+-++...+.-|+++.
T Consensus 188 k~~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 188 KAALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 346778899999999999888776 677777777778899999999999999998888887653
No 468
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.32 E-value=2.2e+02 Score=28.09 Aligned_cols=87 Identities=7% Similarity=-0.056 Sum_probs=60.5
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQ------LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
..+..++..+.+.|..-.. -++.| ......|.-+|....+.++|.+++++..+.. +.++.+--.+..+...
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLA 440 (872)
T ss_pred HHHHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHH
Confidence 3455677778877766554 22322 2334566677788889999999999987665 5566666666677778
Q ss_pred cCChHHHHHHHHHHHH
Q 047840 348 YGKIEVGNRVWRKLAE 363 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~ 363 (445)
.|+.++|+........
T Consensus 441 E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKS 456 (872)
T ss_pred hcchHHHHHHHHHHHh
Confidence 8888888888777655
No 469
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=2.9e+02 Score=25.41 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHH
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQM 154 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~ 154 (445)
....++..|...++|+.--+...-+
T Consensus 54 v~~~i~~lc~~~~~w~~Lne~i~~L 78 (439)
T KOG1498|consen 54 VLEEIMKLCFSAKDWDLLNEQIRLL 78 (439)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHH
Confidence 3445555566666665554444333
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.92 E-value=1.8e+02 Score=24.75 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=26.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc----CCC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMG----GLG-GGDANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
.+..-|.+.|++++|.++|+.+.. .|. .+...+...+..++...|+.+..+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445556666677777666666521 111 122233444444555555555544443
No 471
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.79 E-value=2.8e+02 Score=25.07 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=48.2
Q ss_pred cHHHHHHHHHHhHHhhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 279 MVRDGLNLFENMSAVYGVEPQL----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
-.+++..+++.+... -|+. ..|-+++......|.+++.+.+|++++..|-.|-...-..++..+-
T Consensus 118 p~eei~~~L~~li~~---IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN---IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 346677777777753 4553 4567778888888999999999999998888887777776666654
No 472
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.74 E-value=1.2e+02 Score=20.76 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=28.0
Q ss_pred HHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHH
Q 047840 107 YGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEV 147 (445)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 147 (445)
-....+.++|.++++.++.+...+|..+..++...|+..-|
T Consensus 40 ~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 40 QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 33445567777777777777777777777777776665544
No 473
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.71 E-value=4e+02 Score=26.96 Aligned_cols=83 Identities=11% Similarity=0.026 Sum_probs=51.0
Q ss_pred hHHHHHHHHHH-HHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC-CC------------ChhHHHHHHHHH
Q 047840 245 AKKSLELFDRM-VKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV-EP------------QLEHYACVVDLL 310 (445)
Q Consensus 245 ~~~a~~~~~~m-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~------------~~~~~~~l~~~~ 310 (445)
.++....+... ...|+..+......++... .|++..+..+++.+... +- .. +......|++++
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~-g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIAL-GSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 45555555554 3457777877777777654 58999999999887653 21 11 112223334443
Q ss_pred HhcCChHHHHHHHHHHhcCCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLG 331 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~ 331 (445)
. .++...++.+++++...|.
T Consensus 257 ~-~~d~~~al~~l~~L~~~G~ 276 (709)
T PRK08691 257 I-NQDGAALLAKAQEMAACAV 276 (709)
T ss_pred H-cCCHHHHHHHHHHHHHhCC
Confidence 3 4677777777777776663
No 474
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.57 E-value=3e+02 Score=25.46 Aligned_cols=63 Identities=11% Similarity=0.084 Sum_probs=37.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVG--MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 192 (445)
.+.-+...|...|+++.|++.|.+...-- .+-....|..+|..-.-.|+|.....+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45666777788888888888887754321 1112234444555555566766666665555543
No 475
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=39.84 E-value=68 Score=21.66 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=21.7
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHHHHHHhcc
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPF--VVSSLLEFYSLVHKMGTARALFDK 91 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 91 (445)
.+...+..|+.+ +.+.+.+.|..++.. .-.+.+...+..|+.+-+.-+++.
T Consensus 29 ~l~~A~~~~~~~-----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 81 (89)
T PF12796_consen 29 ALHYAAENGNLE-----IVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEH 81 (89)
T ss_dssp HHHHHHHTTTHH-----HHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHHHHHcCCHH-----HHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 333344555544 333444555554432 111222333445555555555444
No 476
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.48 E-value=2.7e+02 Score=24.66 Aligned_cols=158 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047840 245 AKKSLELFDRMVKSGT----QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 320 (445)
...|.+.|++....+. ..+......++....+.|+.+.-..+++.... .++......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSACRIYGK-----IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
++++.+...+..++......+......... ++-..+-|+.+.+.-+........++..+...-..++-.+-++..
T Consensus 222 ~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHH
Q ss_pred HhcCCccCCcc
Q 047840 396 SETGMKKKPGC 406 (445)
Q Consensus 396 ~~~~~~~~~~~ 406 (445)
.+..-.+.|+.
T Consensus 302 ~~~~~~~~~~~ 312 (324)
T PF11838_consen 302 FEDKPKPPPGL 312 (324)
T ss_dssp HHHHCTCCCTT
T ss_pred HhhCcCCChHH
No 477
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.26 E-value=3.1e+02 Score=25.28 Aligned_cols=57 Identities=5% Similarity=-0.035 Sum_probs=38.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCChhHHHHHHHHHHHc
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNES--GLVSVLTACA--HLGAITQGLWVHSYAKRY 192 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 192 (445)
+..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556889999999999998876 555554 3444444443 345677888888776654
No 478
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=39.14 E-value=63 Score=22.41 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=9.8
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHH
Q 047840 114 ENARELFEKMPERNAVSWSAIMAAY 138 (445)
Q Consensus 114 ~~A~~~~~~~~~~~~~~~~~l~~~~ 138 (445)
+.+.++++.++.+.+.+|..+..++
T Consensus 51 ~k~~~Lld~L~~RG~~AF~~F~~aL 75 (90)
T cd08332 51 SQNVALLNLLPKRGPRAFSAFCEAL 75 (90)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHH
Confidence 3333333333333333444443333
No 479
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=39.08 E-value=4.1e+02 Score=26.55 Aligned_cols=45 Identities=9% Similarity=0.105 Sum_probs=29.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccC---CCCChhhHHHHHHHHHcC
Q 047840 65 DPFVVSSLLEFYSLVHKMGTARALFDKS---PDRDVVTWTTMVDGYGKM 110 (445)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~ 110 (445)
+..+| .++-.+.++|++++|.++..+. .+.....+...+..|...
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 34456 4667788999999999998332 234455667777777664
No 480
>PF15469 Sec5: Exocyst complex component Sec5
Probab=38.26 E-value=2.1e+02 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHHHhcCCccCCcccE
Q 047840 384 WDMEANKVRKLISETGMKKKPGCSV 408 (445)
Q Consensus 384 ~~~~A~~~~~~m~~~~~~~~~~~~~ 408 (445)
..++..+++..+.+.+...+|.+.|
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 3444555555555555555555444
No 481
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=38.14 E-value=2.3e+02 Score=23.30 Aligned_cols=36 Identities=8% Similarity=0.192 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
....+.++..+...|+++.|-+.|.-+.... ..|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 4456778888889999999999999887753 33443
No 482
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=37.87 E-value=67 Score=17.22 Aligned_cols=12 Identities=17% Similarity=0.243 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHh
Q 047840 316 VEEAEKFIEEKM 327 (445)
Q Consensus 316 ~~~A~~~~~~~~ 327 (445)
++.|..+|++.+
T Consensus 3 ~dRAR~IyeR~v 14 (32)
T PF02184_consen 3 FDRARSIYERFV 14 (32)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 483
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.71 E-value=1.5e+02 Score=21.55 Aligned_cols=40 Identities=25% Similarity=0.035 Sum_probs=28.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+++.+.+|...++|+++++-|.+.| ..+...-+.|-..+.
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~ 106 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILV 106 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 5666778888899999998888877 666665555544443
No 484
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=37.51 E-value=3.5e+02 Score=25.32 Aligned_cols=190 Identities=11% Similarity=0.015 Sum_probs=88.4
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 047840 85 ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES 164 (445)
Q Consensus 85 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 164 (445)
...+.+.+..++..+......++...+..+....+..-+..+++......+.++...+. .+...+....+ .+|..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~ 162 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDAL 162 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHH
Confidence 44444555555665666777777776666655555555555555554444454444331 12233333332 34555
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhc-CCCCChhhHHHHHHHHHhcC
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEG-ISNKDAGAWNAMISGVAMNG 243 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~ 243 (445)
.-..-+.++...+..+..- .+..+.. .+|..+-..-+.+....|. +.|...+.. ...++......+...+...
T Consensus 163 Vra~A~raLG~l~~~~a~~-~L~~al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 163 VRAAALRALGELPRRLSES-TLRLYLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA- 236 (410)
T ss_pred HHHHHHHHHHhhccccchH-HHHHHHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-
Confidence 5555555555555433222 2223322 2344555555555556665 444444433 3333333333333333222
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENM 290 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (445)
..+++...+..+.+. + .+-...+.++.+.|+...+.-+.+.+
T Consensus 237 ~~~~a~~~L~~ll~d---~--~vr~~a~~AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 237 GGPDAQAWLRELLQA---A--ATRREALRAVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred CchhHHHHHHHHhcC---h--hhHHHHHHHHHHcCCcchHHHHHHHh
Confidence 223555555444432 1 13344455555555555444444433
No 485
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.80 E-value=3.5e+02 Score=25.08 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-------------C
Q 047840 164 SGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-------------D 228 (445)
Q Consensus 164 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------~ 228 (445)
..+.-+...|...|+++.|.+.|.+....- .......+..++..-.-.|+|.....+..+.... -
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456677888899999999999998876542 1223445566666667778887776666554431 1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-C-----CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKS-G-----TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEH 302 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 302 (445)
...+..+.. ...+++..|.+.|-..... . +.|...+....+.+++.-++-+--..+.....-..-....+..
T Consensus 231 l~C~agLa~--L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLAN--LLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 112222222 2233555555554332211 1 3344444444455554444433222222211111011223344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhc
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMG 328 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 328 (445)
+..+..-| .+++...+++++++..
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 44444444 4678888888888743
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.72 E-value=1.8e+02 Score=21.74 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCC--CchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGIT--DFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
...++|..|...+.. .+..|...+..+...|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356677777765543 45556667777777888888877775
No 487
>PRK12356 glutaminase; Reviewed
Probab=36.36 E-value=3.2e+02 Score=24.46 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.0
Q ss_pred CCCCchhhhhHHH
Q 047840 193 HLEKNVILATAVV 205 (445)
Q Consensus 193 ~~~~~~~~~~~l~ 205 (445)
|.+|+...||+++
T Consensus 93 G~EPSG~~FNsi~ 105 (319)
T PRK12356 93 GADPTGLPFNSVI 105 (319)
T ss_pred CCCCCCCCcchHH
Confidence 3444444444444
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.34 E-value=2.2e+02 Score=22.61 Aligned_cols=60 Identities=10% Similarity=0.042 Sum_probs=38.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
+...|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4456777665444 44444444556667888888888887666666655566666666644
No 489
>PRK09857 putative transposase; Provisional
Probab=35.88 E-value=2.4e+02 Score=24.84 Aligned_cols=62 Identities=6% Similarity=0.000 Sum_probs=25.7
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 047840 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG 331 (445)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 331 (445)
..++......++.++..++++.+.+. .++.....-.++.-+.+.|.-+++.++..+|+..|+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~--~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~ 271 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER--SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGV 271 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33444434444444444444444431 122222222334444444444444444455544443
No 490
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.81 E-value=65 Score=20.69 Aligned_cols=51 Identities=12% Similarity=0.008 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
.|....++.++..++...-.+.++..+.++...+.-+...|.--.+.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 466677899999999988899999999999998877766777666665553
No 491
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.76 E-value=3e+02 Score=24.00 Aligned_cols=83 Identities=11% Similarity=0.159 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC-------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA-------KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR---- 312 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 312 (445)
+..+|..+|++..+.|..+-..+...+...|... .+...|...+..+... + +......+...|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~-~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-G---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh-c---CHHHHHHHHHHHHcCCCC
Confidence 6677777777777776544322222333333322 1234677788777764 3 33344444444432
Q ss_pred cCChHHHHHHHHHHhcCC
Q 047840 313 AGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~ 330 (445)
..+..+|...|....+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 347788888888888777
No 492
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.42 E-value=1.7e+02 Score=27.27 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=58.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc---CC
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA---GM 315 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 315 (445)
+...|++.+|+..|+.+... ..+.......+.+++.+++...++ ++....+..-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE--------Yilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE--------YILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH--------HHHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccccc
Confidence 45678999999998877553 111122222334444454444432 1122222222221 11
Q ss_pred h---HHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 316 V---EEAEKFIEEKMGGLGGGDA--NVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 316 ~---~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
. .+..++---+...+++|.. .++..-+..+.+.+++..|-.+-+++++.+|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 1 2333444444444555554 345666777788999999999999999998864
No 493
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.29 E-value=2.7e+02 Score=23.37 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC---ChhHH--HHHHHHHHhcCChHHHHHHHHHH
Q 047840 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP---QLEHY--ACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 260 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
+.++..-++.|+--|.-...+.+|...|..-. |+.| +..++ ..-|......|++++|.+....+
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHh
Confidence 44455555555555444444444544444332 4444 22222 23455556677777777766665
No 494
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=35.16 E-value=2.8e+02 Score=23.51 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHH
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA-HLGAITQGLWVHSYAKR 191 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 191 (445)
.++...-+.|+++++.+.++++...+...+..--+.+..+|- ..|....+.+++.....
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 356777888999999999999988877777777777776663 34455555666655544
No 495
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.87 E-value=5.2e+02 Score=28.08 Aligned_cols=157 Identities=8% Similarity=-0.038 Sum_probs=0.0
Q ss_pred HHHHhcCChHHHHH------HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHH-------HHHHhHHhhCCCCChhHH
Q 047840 237 SGVAMNGDAKKSLE------LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN-------LFENMSAVYGVEPQLEHY 303 (445)
Q Consensus 237 ~~~~~~~~~~~a~~------~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~-------~~~~~~~~~~~~~~~~~~ 303 (445)
......|.+.++.+ ++...-..--++....|..+...+-+.++.++|.. +.+++... .-.-+...|
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~-ds~~t~~~y 1018 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK-DSPNTKLAY 1018 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC-CCHHHHHHh
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCC---C
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLG-------GGDANVWGALLSACRIYGKIEVGNRVWRKLAE-----MGIT---D 368 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~---~ 368 (445)
..+...+...++...|...+.+....-. +|...+++.+-..+...++++.|.++++.+.. .+|. .
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
...+..+++.+...+++..|....+.
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhh
No 496
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.44 E-value=1.9e+02 Score=22.89 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=42.8
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChh
Q 047840 116 ARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAIT 180 (445)
Q Consensus 116 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 180 (445)
+.++++...-+.+..-..++..+...++.-.|.++++.+.+.+..++..|..--+..+...|-+.
T Consensus 13 ~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33444433334444555667777777778889999999998887777777666666666665443
No 497
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=33.77 E-value=86 Score=17.21 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=4.0
Q ss_pred HcCChHHHHHH
Q 047840 347 IYGKIEVGNRV 357 (445)
Q Consensus 347 ~~g~~~~a~~~ 357 (445)
..|++++|+++
T Consensus 13 ~~~ky~~A~~~ 23 (36)
T PF07720_consen 13 QKGKYDEAIHF 23 (36)
T ss_dssp HTT-HHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 33444444444
No 498
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.71 E-value=3.5e+02 Score=26.94 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHhhcCCcH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFVAVLTTCTHAKMV 280 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~ 280 (445)
.+..+|..+|++-.+..+++..... |-+.-...||..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666666553 2222334555566666666644
No 499
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.11 E-value=2.3e+02 Score=21.82 Aligned_cols=62 Identities=6% Similarity=-0.048 Sum_probs=41.2
Q ss_pred HHHHhcCCCCCcccHHHHHHHhhhc-CCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 19 LDMLDMGFEPNNYTFPPLIKACVIL-GPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 19 ~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+.+.+.|.+++..- ..++..+... +..- .|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~-sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHV-SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34556677766653 3455555543 4566 7999999999888777777655666777776654
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=33.02 E-value=1.1e+02 Score=22.10 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=25.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 278 (445)
++..+...+..-.|.++++++.+.+..++..|....+..+...|
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34444445555667777777776665556665555555555554
Done!