Query 047840
Match_columns 445
No_of_seqs 573 out of 2813
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 05:46:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-37 5.1E-42 301.5 37.7 387 2-398 91-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.4E-35 8.4E-40 285.9 33.8 376 9-398 67-504 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.6E-30 1.2E-34 236.0 36.9 372 3-384 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-28 5E-33 225.2 35.8 354 37-398 6-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-29 3.8E-34 236.7 20.7 199 116-346 9-221 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-29 5.3E-34 235.8 20.9 183 98-312 27-222 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.2E-25 4.2E-30 213.6 30.7 388 3-399 14-479 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.1E-25 1.7E-29 209.4 29.0 362 31-399 7-445 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-24 5.6E-29 202.4 30.3 323 65-395 25-406 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 6.1E-24 2.1E-28 198.5 30.9 365 12-386 9-442 (450)
11 3fp2_A TPR repeat-containing p 99.9 4.3E-23 1.5E-27 197.3 35.4 386 3-399 33-492 (537)
12 3ieg_A DNAJ homolog subfamily 99.9 7.3E-21 2.5E-25 171.8 33.5 291 101-398 7-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 2.1E-21 7.1E-26 175.4 29.3 308 68-383 5-354 (359)
14 1fch_A Peroxisomal targeting s 99.9 5E-21 1.7E-25 173.7 24.5 259 131-394 67-355 (368)
15 3fp2_A TPR repeat-containing p 99.9 2.9E-20 1E-24 177.6 30.6 363 3-373 67-500 (537)
16 3hym_B Cell division cycle pro 99.9 2.2E-20 7.6E-25 166.6 27.6 286 96-385 21-321 (330)
17 3hym_B Cell division cycle pro 99.9 1.3E-19 4.6E-24 161.6 28.4 268 126-398 20-299 (330)
18 2xm6_A Protein corresponding t 99.9 1E-18 3.5E-23 164.7 35.2 360 15-399 27-433 (490)
19 4eqf_A PEX5-related protein; a 99.9 3.6E-20 1.2E-24 167.9 23.5 263 127-394 64-352 (365)
20 2xm6_A Protein corresponding t 99.9 6.2E-18 2.1E-22 159.4 39.4 337 8-367 56-435 (490)
21 3mkr_A Coatomer subunit epsilo 99.9 1.3E-18 4.6E-23 151.6 30.5 269 107-390 9-286 (291)
22 3cv0_A Peroxisome targeting si 99.8 4.1E-19 1.4E-23 158.2 23.4 259 131-395 24-312 (327)
23 1b89_A Protein (clathrin heavy 99.8 3.8E-19 1.3E-23 158.4 21.8 285 7-325 15-307 (449)
24 2ooe_A Cleavage stimulation fa 99.8 1.3E-17 4.3E-22 158.9 33.3 383 5-398 22-492 (530)
25 1b89_A Protein (clathrin heavy 99.8 3.2E-20 1.1E-24 165.3 12.8 284 78-392 15-305 (449)
26 1fch_A Peroxisomal targeting s 99.8 5.4E-19 1.8E-23 160.3 21.2 258 138-398 35-314 (368)
27 3mkr_A Coatomer subunit epsilo 99.8 2.3E-18 7.9E-23 150.1 22.4 248 135-398 6-264 (291)
28 4eqf_A PEX5-related protein; a 99.8 2.6E-18 9E-23 155.6 22.5 233 162-398 64-310 (365)
29 2ooe_A Cleavage stimulation fa 99.8 8.3E-17 2.8E-21 153.2 32.0 374 18-399 2-455 (530)
30 4g1t_A Interferon-induced prot 99.8 4.5E-17 1.5E-21 152.9 28.6 355 29-401 50-462 (472)
31 1xi4_A Clathrin heavy chain; a 99.8 4.4E-16 1.5E-20 154.6 36.1 345 2-393 992-1340(1630)
32 3cv0_A Peroxisome targeting si 99.8 6.1E-18 2.1E-22 150.6 19.7 262 98-365 22-316 (327)
33 3uq3_A Heat shock protein STI1 99.8 5.3E-17 1.8E-21 139.2 20.0 228 129-397 6-235 (258)
34 3uq3_A Heat shock protein STI1 99.8 1.6E-16 5.6E-21 136.1 22.3 186 203-399 10-203 (258)
35 4g1t_A Interferon-induced prot 99.8 1.9E-16 6.4E-21 148.7 24.4 357 4-376 60-471 (472)
36 2pl2_A Hypothetical conserved 99.7 1.4E-16 4.9E-21 132.6 18.9 196 195-396 2-212 (217)
37 1xi4_A Clathrin heavy chain; a 99.7 1.1E-14 3.9E-19 144.7 33.7 334 5-383 1059-1415(1630)
38 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.7E-22 161.1 11.3 147 229-383 127-286 (1134)
39 3e4b_A ALGK; tetratricopeptide 99.7 3.4E-16 1.2E-20 145.4 19.3 374 4-398 12-421 (452)
40 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-17 3.6E-22 161.1 9.3 147 97-243 127-286 (1134)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 1E-15 3.5E-20 132.5 19.4 244 140-392 17-269 (275)
42 3u4t_A TPR repeat-containing p 99.7 1.7E-15 5.8E-20 131.0 19.9 248 131-382 6-268 (272)
43 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-14 3.9E-19 124.2 23.6 209 128-372 37-246 (252)
44 2q7f_A YRRB protein; TPR, prot 99.7 1.2E-15 4.2E-20 129.5 17.3 214 129-379 24-237 (243)
45 2h6f_A Protein farnesyltransfe 99.7 4.8E-15 1.6E-19 133.5 21.9 249 127-382 96-366 (382)
46 3u4t_A TPR repeat-containing p 99.7 1.2E-14 4.1E-19 125.6 22.8 232 163-399 3-251 (272)
47 1ouv_A Conserved hypothetical 99.7 7E-14 2.4E-18 120.9 27.1 225 127-367 5-254 (273)
48 2pl2_A Hypothetical conserved 99.7 3E-15 1E-19 124.6 17.6 209 127-362 4-212 (217)
49 1ouv_A Conserved hypothetical 99.7 8.5E-14 2.9E-18 120.4 27.0 224 162-400 5-253 (273)
50 2vq2_A PILW, putative fimbrial 99.7 3.1E-14 1.1E-18 119.0 22.9 135 233-370 80-217 (225)
51 2vq2_A PILW, putative fimbrial 99.7 2.5E-14 8.5E-19 119.7 22.2 199 197-398 7-211 (225)
52 3e4b_A ALGK; tetratricopeptide 99.7 1.2E-14 4.2E-19 134.9 22.0 345 35-401 8-390 (452)
53 2q7f_A YRRB protein; TPR, prot 99.7 6.3E-15 2.2E-19 125.0 18.2 199 197-399 22-223 (243)
54 2ho1_A Type 4 fimbrial biogene 99.7 2.2E-14 7.4E-19 122.5 21.1 199 198-399 37-239 (252)
55 3sf4_A G-protein-signaling mod 99.6 7.4E-15 2.5E-19 134.7 19.1 93 99-191 11-115 (406)
56 2h6f_A Protein farnesyltransfe 99.6 1.2E-14 4.2E-19 130.8 19.7 238 163-408 97-356 (382)
57 4a1s_A PINS, partner of inscut 99.6 6.3E-15 2.2E-19 135.6 18.0 265 133-398 53-372 (411)
58 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-14 4.6E-19 125.5 18.6 239 109-358 17-269 (275)
59 3vtx_A MAMA; tetratricopeptide 99.6 8.2E-14 2.8E-18 112.7 21.4 167 228-398 4-170 (184)
60 3ro2_A PINS homolog, G-protein 99.6 8.4E-15 2.9E-19 130.5 17.1 267 131-398 8-332 (338)
61 3sf4_A G-protein-signaling mod 99.6 8.5E-15 2.9E-19 134.3 14.3 296 63-386 6-364 (406)
62 4abn_A Tetratricopeptide repea 99.6 2.3E-14 7.8E-19 133.9 16.0 193 197-394 101-317 (474)
63 2ond_A Cleavage stimulation fa 99.6 3.1E-12 1E-16 112.6 26.5 221 145-369 33-275 (308)
64 4a1s_A PINS, partner of inscut 99.5 3.9E-14 1.3E-18 130.3 12.8 238 130-367 88-375 (411)
65 3vtx_A MAMA; tetratricopeptide 99.5 3.2E-13 1.1E-17 109.2 16.7 169 197-369 4-175 (184)
66 3nf1_A KLC 1, kinesin light ch 99.5 3.9E-14 1.3E-18 124.8 10.8 240 127-397 26-306 (311)
67 3ro2_A PINS homolog, G-protein 99.5 1.8E-13 6.2E-18 121.8 15.2 138 230-367 184-335 (338)
68 3ulq_A Response regulator aspa 99.5 2.6E-13 9E-18 123.5 15.6 228 170-398 110-368 (383)
69 2ond_A Cleavage stimulation fa 99.5 6.3E-12 2.2E-16 110.6 23.9 214 180-399 33-271 (308)
70 3nf1_A KLC 1, kinesin light ch 99.5 8.5E-14 2.9E-18 122.6 10.9 240 96-367 26-310 (311)
71 3as5_A MAMA; tetratricopeptide 99.5 2E-12 6.8E-17 104.3 18.1 163 232-398 11-173 (186)
72 4gyw_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.7E-17 126.8 19.7 165 228-397 8-173 (723)
73 1hz4_A MALT regulatory protein 99.5 4.2E-11 1.4E-15 108.5 28.4 264 134-397 20-321 (373)
74 4abn_A Tetratricopeptide repea 99.5 1.3E-12 4.6E-17 121.9 18.6 211 144-361 84-318 (474)
75 4e6h_A MRNA 3'-END-processing 99.5 2.1E-10 7.3E-15 110.2 32.9 212 184-398 330-570 (679)
76 3ulq_A Response regulator aspa 99.5 7.5E-12 2.6E-16 113.8 22.0 230 106-365 112-369 (383)
77 3as5_A MAMA; tetratricopeptide 99.4 1.2E-11 4.2E-16 99.6 19.5 169 198-370 8-179 (186)
78 4i17_A Hypothetical protein; T 99.4 6.8E-12 2.3E-16 105.2 17.8 191 197-398 6-209 (228)
79 4i17_A Hypothetical protein; T 99.4 1.4E-11 4.7E-16 103.3 18.1 207 161-379 5-224 (228)
80 4e6h_A MRNA 3'-END-processing 99.4 3.6E-10 1.2E-14 108.7 29.6 221 146-370 327-576 (679)
81 3q15_A PSP28, response regulat 99.4 3.5E-11 1.2E-15 109.2 20.3 231 134-396 107-363 (378)
82 3q15_A PSP28, response regulat 99.4 8.5E-12 2.9E-16 113.3 15.8 189 205-394 108-328 (378)
83 1hz4_A MALT regulatory protein 99.3 2E-09 7E-14 97.3 27.4 252 39-291 23-320 (373)
84 3edt_B KLC 2, kinesin light ch 99.3 4.1E-11 1.4E-15 103.7 14.9 224 174-397 12-280 (283)
85 4gyw_A UDP-N-acetylglucosamine 99.3 4.8E-11 1.6E-15 116.0 16.5 164 197-365 8-175 (723)
86 3mv2_B Coatomer subunit epsilo 99.3 3.4E-10 1.2E-14 96.8 19.1 183 182-372 85-290 (310)
87 1qqe_A Vesicular transport pro 99.3 8E-11 2.7E-15 102.6 15.5 165 231-395 79-266 (292)
88 3qky_A Outer membrane assembly 99.3 3.5E-10 1.2E-14 96.8 19.3 180 198-398 15-224 (261)
89 3mv2_B Coatomer subunit epsilo 99.3 1.7E-09 5.8E-14 92.6 23.0 241 135-399 20-283 (310)
90 2yhc_A BAMD, UPF0169 lipoprote 99.3 9E-10 3.1E-14 91.9 20.9 62 340-401 152-216 (225)
91 2fo7_A Synthetic consensus TPR 99.3 2.2E-10 7.4E-15 86.8 15.6 129 267-398 4-132 (136)
92 3edt_B KLC 2, kinesin light ch 99.2 6.2E-11 2.1E-15 102.5 12.4 226 138-364 11-281 (283)
93 1qqe_A Vesicular transport pro 99.2 2.3E-10 7.9E-15 99.7 15.9 206 135-368 44-273 (292)
94 3qou_A Protein YBBN; thioredox 99.2 5.6E-10 1.9E-14 96.9 18.1 179 213-396 101-282 (287)
95 4ga2_A E3 SUMO-protein ligase 99.2 3.1E-11 1E-15 93.7 9.0 143 237-384 5-149 (150)
96 3qky_A Outer membrane assembly 99.2 3E-10 1E-14 97.3 16.1 205 161-386 13-249 (261)
97 2fo7_A Synthetic consensus TPR 99.2 6.6E-10 2.3E-14 84.0 16.1 133 231-367 3-135 (136)
98 2pzi_A Probable serine/threoni 99.2 8.6E-11 2.9E-15 114.7 12.5 170 209-384 402-583 (681)
99 2r5s_A Uncharacterized protein 99.2 6.6E-10 2.2E-14 88.8 13.7 160 232-396 9-171 (176)
100 3rjv_A Putative SEL1 repeat pr 99.1 9.4E-09 3.2E-13 84.7 20.1 163 228-400 17-199 (212)
101 2vsy_A XCC0866; transferase, g 99.1 1.4E-09 4.9E-14 104.2 17.0 162 211-376 2-169 (568)
102 4ga2_A E3 SUMO-protein ligase 99.1 2.6E-10 9E-15 88.4 9.1 124 270-397 3-128 (150)
103 2uy1_A Cleavage stimulation fa 99.1 9.7E-08 3.3E-12 89.1 27.7 338 9-363 28-412 (493)
104 3gyz_A Chaperone protein IPGC; 99.1 1.6E-09 5.5E-14 83.5 12.9 103 296-399 31-134 (151)
105 3dra_A Protein farnesyltransfe 99.1 3.4E-08 1.2E-12 85.3 21.9 222 141-396 46-285 (306)
106 2vsy_A XCC0866; transferase, g 99.1 4E-09 1.4E-13 101.1 17.2 159 176-339 2-166 (568)
107 3dra_A Protein farnesyltransfe 99.1 1.3E-07 4.5E-12 81.7 24.9 235 107-377 42-301 (306)
108 2ifu_A Gamma-SNAP; membrane fu 99.1 3.7E-09 1.3E-13 92.8 15.3 157 231-390 78-253 (307)
109 4gco_A Protein STI-1; structur 99.0 5.7E-09 1.9E-13 78.0 13.4 109 266-377 15-123 (126)
110 2pzi_A Probable serine/threoni 99.0 4.4E-09 1.5E-13 102.7 16.2 171 174-350 402-583 (681)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.0 9.6E-09 3.3E-13 84.7 16.1 126 267-398 9-150 (213)
112 3rjv_A Putative SEL1 repeat pr 99.0 2.4E-08 8.3E-13 82.2 18.3 159 200-367 20-200 (212)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 4.2E-09 1.4E-13 92.4 14.3 200 175-396 3-222 (307)
114 4gco_A Protein STI-1; structur 99.0 6.8E-09 2.3E-13 77.5 13.1 102 296-398 8-110 (126)
115 3u3w_A Transcriptional activat 99.0 1E-07 3.6E-12 82.8 22.6 164 234-397 80-265 (293)
116 1a17_A Serine/threonine protei 99.0 1.3E-08 4.5E-13 80.0 15.3 130 265-397 14-145 (166)
117 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.9E-08 6.4E-13 83.8 16.8 187 162-369 3-218 (225)
118 2vgx_A Chaperone SYCD; alterna 99.0 2E-09 6.9E-14 83.1 10.1 98 300-398 21-118 (148)
119 3urz_A Uncharacterized protein 99.0 8.9E-09 3E-13 84.6 14.0 134 203-342 59-197 (208)
120 3urz_A Uncharacterized protein 99.0 1.2E-08 4E-13 83.9 14.7 124 270-397 60-185 (208)
121 1na0_A Designed protein CTPR3; 99.0 1.5E-08 5.3E-13 75.2 14.0 117 264-383 9-125 (125)
122 3qou_A Protein YBBN; thioredox 99.0 4.3E-08 1.5E-12 84.9 18.2 162 160-326 114-281 (287)
123 2e2e_A Formate-dependent nitri 99.0 1E-08 3.5E-13 81.8 13.2 119 276-397 22-143 (177)
124 2uy1_A Cleavage stimulation fa 99.0 6.5E-08 2.2E-12 90.3 20.5 356 7-397 6-412 (493)
125 2r5s_A Uncharacterized protein 99.0 1.6E-08 5.5E-13 80.6 14.2 158 201-363 9-172 (176)
126 2lni_A Stress-induced-phosphop 99.0 1.5E-08 5.3E-13 76.3 13.3 119 263-384 15-133 (133)
127 2vyi_A SGTA protein; chaperone 99.0 1.7E-08 5.8E-13 75.6 13.4 120 263-385 11-130 (131)
128 2qfc_A PLCR protein; TPR, HTH, 98.9 9.9E-08 3.4E-12 83.0 19.8 167 231-397 77-265 (293)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.9 7.9E-08 2.7E-12 79.2 17.6 128 235-368 12-154 (213)
130 2xcb_A PCRH, regulatory protei 98.9 2.2E-08 7.7E-13 76.6 12.9 98 300-398 18-115 (142)
131 1p5q_A FKBP52, FK506-binding p 98.9 2.2E-08 7.6E-13 88.8 14.5 95 300-395 196-291 (336)
132 3upv_A Heat shock protein STI1 98.9 2.5E-08 8.5E-13 74.5 12.3 98 300-398 4-101 (126)
133 2kck_A TPR repeat; tetratricop 98.8 4.3E-08 1.5E-12 71.1 11.8 101 299-400 5-108 (112)
134 3q49_B STIP1 homology and U bo 98.8 8.1E-08 2.8E-12 72.8 13.5 100 298-398 7-106 (137)
135 2vgx_A Chaperone SYCD; alterna 98.8 1.5E-08 5E-13 78.2 9.1 108 263-373 20-127 (148)
136 1hxi_A PEX5, peroxisome target 98.8 3.7E-08 1.3E-12 72.9 10.8 96 302-398 19-114 (121)
137 3sz7_A HSC70 cochaperone (SGT) 98.8 6.1E-08 2.1E-12 76.2 12.2 111 263-376 10-120 (164)
138 3u3w_A Transcriptional activat 98.8 4.8E-07 1.6E-11 78.6 18.9 160 204-363 81-265 (293)
139 3gyz_A Chaperone protein IPGC; 98.8 6.3E-08 2.2E-12 74.5 11.8 102 265-369 37-138 (151)
140 2e2e_A Formate-dependent nitri 98.8 5.9E-08 2E-12 77.3 12.1 129 240-372 21-152 (177)
141 4gcn_A Protein STI-1; structur 98.8 6.3E-08 2.1E-12 72.4 11.4 97 301-398 9-112 (127)
142 2lni_A Stress-induced-phosphop 98.8 1.1E-07 3.9E-12 71.4 13.0 100 298-398 14-113 (133)
143 1elw_A TPR1-domain of HOP; HOP 98.8 1.4E-07 4.6E-12 69.1 13.1 109 266-377 6-114 (118)
144 4f3v_A ESX-1 secretion system 98.8 1.8E-07 6.2E-12 79.0 15.1 138 233-375 106-247 (282)
145 3upv_A Heat shock protein STI1 98.8 1.2E-07 4E-12 70.8 12.7 113 264-379 4-122 (126)
146 2fbn_A 70 kDa peptidylprolyl i 98.8 1E-07 3.6E-12 77.5 13.2 168 208-397 14-185 (198)
147 1elw_A TPR1-domain of HOP; HOP 98.8 1.4E-07 4.9E-12 69.0 12.7 99 299-398 3-101 (118)
148 2xcb_A PCRH, regulatory protei 98.8 9.2E-08 3.1E-12 73.1 11.9 108 265-375 19-126 (142)
149 1na0_A Designed protein CTPR3; 98.8 1.6E-07 5.5E-12 69.5 13.0 98 300-398 9-106 (125)
150 3gw4_A Uncharacterized protein 98.8 2.2E-07 7.6E-12 75.7 14.6 156 241-397 4-175 (203)
151 2dba_A Smooth muscle cell asso 98.8 3.3E-07 1.1E-11 70.3 14.7 113 263-379 27-143 (148)
152 3sz7_A HSC70 cochaperone (SGT) 98.7 2E-07 6.9E-12 73.2 13.5 95 301-396 12-106 (164)
153 1a17_A Serine/threonine protei 98.7 4E-07 1.4E-11 71.4 15.2 130 230-363 14-145 (166)
154 3q7a_A Farnesyltransferase alp 98.7 8.3E-06 2.8E-10 71.3 24.5 233 137-374 63-342 (349)
155 2qfc_A PLCR protein; TPR, HTH, 98.7 1E-06 3.5E-11 76.5 18.6 164 200-363 77-265 (293)
156 3q49_B STIP1 homology and U bo 98.7 2.4E-07 8.1E-12 70.1 12.5 115 262-379 7-126 (137)
157 3q7a_A Farnesyltransferase alp 98.7 1.4E-06 4.6E-11 76.2 18.5 217 176-397 67-330 (349)
158 2c2l_A CHIP, carboxy terminus 98.7 3.3E-08 1.1E-12 85.4 8.1 193 163-397 4-198 (281)
159 2vyi_A SGTA protein; chaperone 98.7 3.5E-07 1.2E-11 68.3 12.5 99 299-398 11-109 (131)
160 3gw4_A Uncharacterized protein 98.7 3.1E-07 1.1E-11 74.7 12.5 156 209-365 3-177 (203)
161 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 4.1E-07 1.4E-11 84.3 14.4 96 300-396 317-413 (457)
162 2dba_A Smooth muscle cell asso 98.6 7.2E-07 2.5E-11 68.3 13.6 99 298-398 26-128 (148)
163 4f3v_A ESX-1 secretion system 98.6 2.2E-06 7.4E-11 72.4 17.1 182 7-193 18-238 (282)
164 1elr_A TPR2A-domain of HOP; HO 98.6 3.6E-07 1.2E-11 68.2 11.1 95 302-397 6-107 (131)
165 2xev_A YBGF; tetratricopeptide 98.6 6.1E-07 2.1E-11 67.0 11.8 90 307-397 9-104 (129)
166 1wao_1 Serine/threonine protei 98.6 2.3E-07 7.9E-12 86.4 11.0 121 270-393 12-134 (477)
167 2kck_A TPR repeat; tetratricop 98.6 5E-07 1.7E-11 65.3 10.7 102 265-369 7-111 (112)
168 2xev_A YBGF; tetratricopeptide 98.6 2E-06 7E-11 64.1 14.3 104 269-376 7-117 (129)
169 3dss_A Geranylgeranyl transfer 98.6 2.9E-05 1E-09 67.5 23.2 194 179-377 90-317 (331)
170 3dss_A Geranylgeranyl transfer 98.6 1.3E-05 4.3E-10 69.8 20.9 181 214-398 90-304 (331)
171 3rkv_A Putative peptidylprolyl 98.6 4.6E-07 1.6E-11 70.9 11.0 62 336-397 64-125 (162)
172 1p5q_A FKBP52, FK506-binding p 98.6 1.3E-06 4.5E-11 77.4 15.0 149 212-363 127-293 (336)
173 3k9i_A BH0479 protein; putativ 98.6 1.1E-07 3.8E-12 69.9 6.8 85 313-397 3-89 (117)
174 2hr2_A Hypothetical protein; a 98.6 7.6E-07 2.6E-11 67.9 11.3 96 303-398 14-131 (159)
175 1elr_A TPR2A-domain of HOP; HO 98.6 5.2E-07 1.8E-11 67.3 10.5 113 265-380 5-123 (131)
176 3rkv_A Putative peptidylprolyl 98.5 1.8E-07 6.2E-12 73.2 7.8 80 299-379 62-142 (162)
177 2fbn_A 70 kDa peptidylprolyl i 98.5 2.6E-07 9.1E-12 75.0 8.7 165 168-355 9-176 (198)
178 1ihg_A Cyclophilin 40; ppiase 98.5 1.4E-06 4.8E-11 78.1 13.8 91 299-390 272-362 (370)
179 1hxi_A PEX5, peroxisome target 98.5 6.7E-07 2.3E-11 66.0 9.8 99 267-368 20-118 (121)
180 2c2l_A CHIP, carboxy terminus 98.5 1.1E-06 3.9E-11 75.6 12.6 108 263-373 3-110 (281)
181 3k9i_A BH0479 protein; putativ 98.5 1.9E-07 6.6E-12 68.5 6.2 95 276-372 2-98 (117)
182 2if4_A ATFKBP42; FKBP-like, al 98.5 5.2E-07 1.8E-11 80.0 9.9 149 229-398 179-328 (338)
183 3ro3_A PINS homolog, G-protein 98.4 2.2E-06 7.4E-11 66.6 11.4 133 266-398 11-158 (164)
184 4b4t_Q 26S proteasome regulato 98.4 1.1E-05 3.8E-10 74.2 17.1 213 169-396 10-243 (434)
185 2hr2_A Hypothetical protein; a 98.4 1.6E-06 5.5E-11 66.1 9.1 103 269-375 16-142 (159)
186 1na3_A Designed protein CTPR2; 98.4 4E-06 1.4E-10 57.9 10.2 83 300-383 9-91 (91)
187 2kat_A Uncharacterized protein 98.4 3.1E-06 1.1E-10 61.7 10.1 79 318-397 3-81 (115)
188 1wao_1 Serine/threonine protei 98.4 2.9E-06 9.9E-11 79.0 12.2 115 241-359 18-134 (477)
189 2l6j_A TPR repeat-containing p 98.4 1.1E-06 3.6E-11 63.6 7.4 94 299-393 3-102 (111)
190 4b4t_Q 26S proteasome regulato 98.4 1.8E-05 6.2E-10 72.7 17.2 193 135-327 11-243 (434)
191 4gcn_A Protein STI-1; structur 98.4 1.4E-05 4.7E-10 59.4 13.4 96 269-366 13-114 (127)
192 1dce_A Protein (RAB geranylger 98.3 2E-05 6.7E-10 74.8 16.8 169 215-387 46-244 (567)
193 3ro3_A PINS homolog, G-protein 98.3 6.4E-06 2.2E-10 63.9 10.9 136 231-366 11-160 (164)
194 3n71_A Histone lysine methyltr 98.3 7E-06 2.4E-10 76.0 12.2 132 273-404 318-470 (490)
195 2if4_A ATFKBP42; FKBP-like, al 98.2 4.1E-06 1.4E-10 74.2 9.8 154 198-369 179-333 (338)
196 3ma5_A Tetratricopeptide repea 98.2 1.1E-05 3.8E-10 57.0 9.8 66 332-397 4-69 (100)
197 1ihg_A Cyclophilin 40; ppiase 98.2 9.3E-06 3.2E-10 72.8 10.5 94 304-398 227-336 (370)
198 1zu2_A Mitochondrial import re 98.1 3.6E-06 1.2E-10 64.0 6.1 87 311-398 13-120 (158)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.5E-05 1.2E-09 71.3 13.9 148 212-362 248-413 (457)
200 2kat_A Uncharacterized protein 98.1 3E-05 1E-09 56.3 9.8 83 282-367 3-85 (115)
201 1klx_A Cysteine rich protein B 98.0 0.00018 6.3E-09 54.1 13.9 89 306-399 31-127 (138)
202 1dce_A Protein (RAB geranylger 98.0 0.00016 5.6E-09 68.5 15.7 153 242-398 42-221 (567)
203 3ma5_A Tetratricopeptide repea 98.0 3.6E-05 1.2E-09 54.3 8.0 69 298-367 5-73 (100)
204 3bee_A Putative YFRE protein; 97.9 0.00013 4.5E-09 50.4 10.1 69 332-400 3-74 (93)
205 1klx_A Cysteine rich protein B 97.9 0.00081 2.8E-08 50.5 15.2 113 243-367 9-129 (138)
206 1zu2_A Mitochondrial import re 97.9 2.4E-05 8.2E-10 59.5 6.5 91 277-370 15-126 (158)
207 2l6j_A TPR repeat-containing p 97.9 7.9E-05 2.7E-09 53.4 8.6 66 333-398 2-67 (111)
208 2kc7_A BFR218_protein; tetratr 97.8 0.00026 8.7E-09 49.6 9.8 80 306-394 6-86 (99)
209 1na3_A Designed protein CTPR2; 97.7 0.0002 6.8E-09 49.1 8.7 65 334-398 8-72 (91)
210 3n71_A Histone lysine methyltr 97.7 0.00028 9.4E-09 65.4 10.8 127 238-364 318-464 (490)
211 1pc2_A Mitochondria fission pr 97.6 0.00087 3E-08 50.3 10.8 91 278-371 12-107 (152)
212 3qww_A SET and MYND domain-con 97.6 0.00067 2.3E-08 61.7 11.7 107 312-436 310-431 (433)
213 3qwp_A SET and MYND domain-con 97.5 0.0005 1.7E-08 62.6 10.5 117 307-441 294-425 (429)
214 3ly7_A Transcriptional activat 97.5 0.0083 2.8E-07 52.5 16.8 70 297-368 274-343 (372)
215 3bee_A Putative YFRE protein; 97.4 0.002 6.9E-08 44.3 10.2 71 297-368 3-76 (93)
216 2kc7_A BFR218_protein; tetratr 97.4 0.00064 2.2E-08 47.4 7.9 59 341-399 6-65 (99)
217 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0021 7.3E-08 45.4 10.1 78 299-376 4-87 (104)
218 3qww_A SET and MYND domain-con 97.2 0.0017 5.7E-08 59.1 10.4 97 276-372 310-424 (433)
219 3qwp_A SET and MYND domain-con 97.2 0.0026 8.8E-08 57.9 10.8 104 271-374 294-415 (429)
220 3lvg_A Clathrin heavy chain 1; 97.1 0.00075 2.6E-08 60.5 6.6 209 29-250 82-325 (624)
221 1wy6_A Hypothetical protein ST 97.1 0.044 1.5E-06 39.6 15.3 141 239-401 17-157 (172)
222 3ly7_A Transcriptional activat 97.1 0.018 6.1E-07 50.4 14.3 136 260-399 190-340 (372)
223 1qsa_A Protein (soluble lytic 97.0 0.28 9.4E-06 46.7 25.8 115 244-363 229-347 (618)
224 3mkq_A Coatomer beta'-subunit; 96.9 0.11 3.7E-06 51.8 20.4 126 70-220 633-758 (814)
225 3u64_A Protein TP_0956; tetrat 96.8 0.0075 2.6E-07 50.6 9.8 88 316-405 179-276 (301)
226 3lvg_A Clathrin heavy chain 1; 96.8 6.4E-05 2.2E-09 67.1 -2.7 260 67-355 55-324 (624)
227 1pc2_A Mitochondria fission pr 96.8 0.013 4.6E-07 43.9 10.0 78 248-328 17-99 (152)
228 3mkq_A Coatomer beta'-subunit; 96.8 0.07 2.4E-06 53.2 18.4 45 209-255 663-707 (814)
229 4h7y_A Dual specificity protei 96.5 0.025 8.6E-07 41.9 9.2 61 312-373 72-132 (161)
230 2v5f_A Prolyl 4-hydroxylase su 96.5 0.022 7.5E-07 40.0 8.9 66 333-398 3-75 (104)
231 1nzn_A CGI-135 protein, fissio 96.0 0.025 8.5E-07 40.8 6.9 92 278-372 15-111 (126)
232 1nzn_A CGI-135 protein, fissio 95.9 0.14 4.7E-06 37.0 10.6 86 242-330 14-104 (126)
233 4gns_B Protein CSD3, chitin bi 95.8 0.05 1.7E-06 52.7 10.4 56 341-396 343-398 (754)
234 3mkq_B Coatomer subunit alpha; 95.7 0.51 1.7E-05 36.3 14.5 25 129-153 35-59 (177)
235 3u64_A Protein TP_0956; tetrat 95.5 0.91 3.1E-05 38.2 19.9 117 211-332 134-272 (301)
236 4h7y_A Dual specificity protei 95.3 0.32 1.1E-05 36.1 10.6 102 299-402 12-127 (161)
237 4ady_A RPN2, 26S proteasome re 95.1 1.4 4.7E-05 43.9 17.5 252 107-363 384-657 (963)
238 4b4t_P 26S proteasome regulato 94.6 2 6.8E-05 39.1 16.7 92 202-293 141-247 (445)
239 2ff4_A Probable regulatory pro 94.6 0.12 4.1E-06 46.3 8.4 69 338-406 174-247 (388)
240 1v54_E Cytochrome C oxidase po 94.4 0.75 2.6E-05 31.3 10.3 62 315-376 25-86 (109)
241 1wy6_A Hypothetical protein ST 94.2 1.1 3.8E-05 32.5 13.5 32 299-330 124-155 (172)
242 3mkq_B Coatomer subunit alpha; 93.8 1.8 6.1E-05 33.3 17.0 128 238-395 14-141 (177)
243 4fhn_B Nucleoporin NUP120; pro 93.4 4.5 0.00015 42.0 18.3 28 197-224 841-868 (1139)
244 2wpv_A GET4, UPF0363 protein Y 93.2 3.7 0.00013 35.1 19.5 180 77-293 24-217 (312)
245 2y69_E Cytochrome C oxidase su 93.1 1.8 6E-05 31.3 10.2 62 315-376 68-129 (152)
246 4fhn_B Nucleoporin NUP120; pro 92.7 1.8 6.1E-05 44.9 14.3 78 200-279 901-986 (1139)
247 1qsa_A Protein (soluble lytic 92.4 7.7 0.00026 36.9 25.1 320 52-397 57-409 (618)
248 3ffl_A Anaphase-promoting comp 92.1 0.85 2.9E-05 34.5 8.1 115 270-396 26-149 (167)
249 3o48_A Mitochondria fission 1 92.1 1.1 3.6E-05 32.5 8.2 66 332-397 37-106 (134)
250 1v54_E Cytochrome C oxidase po 91.0 1.1 3.9E-05 30.4 6.8 62 244-307 25-86 (109)
251 3ffl_A Anaphase-promoting comp 90.9 3.1 0.00011 31.5 10.1 24 202-225 126-149 (167)
252 4gns_B Protein CSD3, chitin bi 90.3 2.6 8.9E-05 41.0 11.5 51 310-361 347-397 (754)
253 3ltm_A Alpha-REP4; protein eng 90.0 6.1 0.00021 31.3 18.7 16 162-177 94-109 (211)
254 4ady_A RPN2, 26S proteasome re 89.9 17 0.00059 36.3 22.6 262 76-347 384-673 (963)
255 3o48_A Mitochondria fission 1 89.8 4.4 0.00015 29.4 9.7 73 298-370 38-113 (134)
256 2ff4_A Probable regulatory pro 89.3 6.5 0.00022 35.0 12.8 60 303-363 174-233 (388)
257 3txn_A 26S proteasome regulato 89.1 12 0.0004 33.3 19.3 294 68-400 21-345 (394)
258 3ltm_A Alpha-REP4; protein eng 89.0 7.3 0.00025 30.8 16.8 105 70-178 37-141 (211)
259 1wdy_A 2-5A-dependent ribonucl 88.3 8.7 0.0003 31.9 12.7 204 5-222 12-240 (285)
260 1y8m_A FIS1; mitochondria, unk 88.3 6 0.00021 29.0 11.5 75 297-371 36-113 (144)
261 1y8m_A FIS1; mitochondria, unk 88.0 6.3 0.00022 28.9 13.3 67 332-398 36-106 (144)
262 2y69_E Cytochrome C oxidase su 87.1 3.9 0.00013 29.6 7.6 62 244-307 68-129 (152)
263 3lpz_A GET4 (YOR164C homolog); 85.8 16 0.00056 31.4 25.0 167 100-292 38-215 (336)
264 4b4t_P 26S proteasome regulato 85.3 22 0.00074 32.3 22.2 97 232-328 140-246 (445)
265 4b4t_R RPN7, 26S proteasome re 84.6 12 0.0004 33.9 11.9 94 200-293 133-237 (429)
266 1zbp_A Hypothetical protein VP 84.3 4.5 0.00015 33.5 8.0 113 272-398 5-129 (273)
267 3kea_A K1L; tropism, ANK repea 83.2 12 0.00039 31.5 10.7 207 7-228 8-222 (285)
268 3ltj_A Alpharep-4; protein eng 82.9 15 0.00051 28.6 18.2 28 228-256 151-178 (201)
269 1zbp_A Hypothetical protein VP 82.5 3.9 0.00013 33.8 6.9 59 308-367 5-63 (273)
270 4b4t_R RPN7, 26S proteasome re 81.6 5.9 0.0002 35.8 8.6 61 266-326 133-194 (429)
271 3lpz_A GET4 (YOR164C homolog); 81.3 26 0.00087 30.2 22.1 168 199-397 36-215 (336)
272 2uwj_G Type III export protein 80.5 11 0.00038 25.5 9.4 86 177-267 20-105 (115)
273 2p58_C Putative type III secre 79.7 12 0.00041 25.4 9.4 86 177-267 21-106 (116)
274 3esl_A Checkpoint serine/threo 79.7 20 0.0007 28.1 9.9 53 313-365 92-145 (202)
275 2uwj_G Type III export protein 78.1 14 0.00046 25.1 8.4 51 106-158 48-98 (115)
276 3ltj_A Alpharep-4; protein eng 77.4 23 0.0008 27.5 19.9 109 197-314 89-197 (201)
277 2p58_C Putative type III secre 77.4 14 0.00049 25.1 9.1 51 106-158 49-99 (116)
278 3txn_A 26S proteasome regulato 73.8 48 0.0016 29.4 22.6 156 203-362 104-282 (394)
279 3eu9_A Huntingtin-interacting 72.3 26 0.00089 27.9 9.5 19 205-223 181-199 (240)
280 2nsz_A Programmed cell death p 71.9 25 0.00086 25.3 8.2 64 100-163 10-78 (129)
281 2wpv_A GET4, UPF0363 protein Y 71.4 47 0.0016 28.3 21.5 168 200-397 35-216 (312)
282 3jxi_A Vanilloid receptor-rela 71.3 9.6 0.00033 31.3 6.7 89 4-94 11-118 (260)
283 1wdy_A 2-5A-dependent ribonucl 70.6 41 0.0014 27.6 10.6 18 206-223 153-170 (285)
284 1n11_A Ankyrin; clathrin, BAND 68.3 61 0.0021 28.9 11.9 282 16-325 28-333 (437)
285 2d2s_A Exocyst complex compone 68.2 15 0.00051 29.9 6.8 85 2-90 25-115 (235)
286 2ion_A PDCD4, programmed cell 67.4 20 0.00068 26.8 6.8 64 100-163 12-80 (152)
287 3eu9_A Huntingtin-interacting 67.3 36 0.0012 27.0 9.4 50 237-291 182-234 (240)
288 1n11_A Ankyrin; clathrin, BAND 65.1 76 0.0026 28.3 12.1 265 36-325 17-300 (437)
289 4a1g_A Mitotic checkpoint seri 64.3 42 0.0014 25.0 8.8 27 99-125 103-129 (152)
290 3kea_A K1L; tropism, ANK repea 64.2 62 0.0021 26.9 12.3 200 72-289 34-243 (285)
291 3esl_A Checkpoint serine/threo 63.4 52 0.0018 25.8 8.8 54 279-333 94-148 (202)
292 1oyz_A Hypothetical protein YI 63.1 63 0.0022 26.6 22.3 60 298-364 204-263 (280)
293 4a1g_A Mitotic checkpoint seri 62.5 45 0.0016 24.8 8.4 48 354-401 84-133 (152)
294 1k1a_A B-cell lymphoma 3-encod 61.6 35 0.0012 27.2 8.2 18 206-223 188-205 (241)
295 3b7b_A Euchromatic histone-lys 59.0 66 0.0022 25.5 11.1 49 73-122 48-99 (237)
296 2wvi_A Mitotic checkpoint seri 58.8 56 0.0019 24.7 8.9 47 319-365 79-126 (164)
297 1oyz_A Hypothetical protein YI 58.8 76 0.0026 26.1 20.1 59 262-328 204-262 (280)
298 1k1a_A B-cell lymphoma 3-encod 56.7 72 0.0025 25.3 10.7 53 39-92 15-69 (241)
299 2d2s_A Exocyst complex compone 56.7 54 0.0018 26.6 8.1 22 271-292 25-46 (235)
300 2nsz_A Programmed cell death p 54.6 36 0.0012 24.5 6.1 60 202-261 11-75 (129)
301 2zu6_B Programmed cell death p 53.9 1E+02 0.0035 26.2 12.3 61 232-293 169-231 (307)
302 3eiq_C Programmed cell death p 51.7 1.2E+02 0.0042 26.4 14.1 62 267-330 220-283 (358)
303 2ion_A PDCD4, programmed cell 47.2 29 0.001 25.8 4.8 60 202-261 13-77 (152)
304 4gq2_M Nucleoporin NUP120; bet 46.1 2.2E+02 0.0074 28.9 12.3 51 103-154 816-866 (950)
305 4aez_C MAD3, mitotic spindle c 45.9 23 0.0008 28.3 4.2 41 96-136 149-189 (223)
306 3mv2_A Coatomer subunit alpha; 45.4 1.4E+02 0.0049 25.4 13.2 129 239-399 124-257 (325)
307 4b4t_S RPN3, 26S proteasome re 45.0 1.9E+02 0.0065 26.7 13.6 61 198-258 231-299 (523)
308 4gq2_M Nucleoporin NUP120; bet 44.7 2.6E+02 0.009 28.3 12.7 129 71-212 815-950 (950)
309 3ljn_A Hypothetical protein; a 44.4 1.5E+02 0.0051 25.5 9.9 16 139-154 92-107 (364)
310 4aez_C MAD3, mitotic spindle c 43.8 42 0.0014 26.8 5.3 50 317-366 131-181 (223)
311 4b4t_S RPN3, 26S proteasome re 43.5 1E+02 0.0034 28.5 8.4 66 265-330 232-300 (523)
312 2etb_A Transient receptor pote 43.5 33 0.0011 27.8 5.2 114 5-121 9-157 (256)
313 2b7e_A PRE-mRNA processing pro 43.4 30 0.001 20.8 3.4 36 11-46 2-38 (59)
314 2rfa_A Transient receptor pote 41.0 1.3E+02 0.0044 23.6 8.4 20 74-93 80-99 (232)
315 3ygs_P Procaspase 9; apoptosis 40.7 36 0.0012 22.9 4.0 38 212-249 51-88 (97)
316 3hra_A Ankyrin repeat family p 40.7 81 0.0028 24.1 6.9 38 183-220 158-197 (201)
317 1ug3_A EIF4GI, eukaryotic prot 40.6 1.8E+02 0.006 25.1 11.0 26 70-95 15-40 (339)
318 2pnn_A Transient receptor pote 40.5 70 0.0024 26.2 6.8 88 5-94 20-126 (273)
319 2zu6_B Programmed cell death p 39.0 1.1E+02 0.0036 26.1 7.5 21 2-22 10-30 (307)
320 4ets_A Ferric uptake regulatio 38.5 86 0.0029 23.5 6.3 70 281-351 14-85 (162)
321 1ya0_A SMG-7 transcript varian 37.8 1.8E+02 0.006 26.8 9.3 77 269-348 157-233 (497)
322 2qx5_A Nucleoporin NIC96; mRNA 37.7 2.8E+02 0.0097 26.6 11.9 17 379-395 548-564 (661)
323 1ya0_A SMG-7 transcript varian 37.6 1.5E+02 0.0052 27.2 8.8 74 307-381 159-232 (497)
324 3bu8_A Telomeric repeat-bindin 36.8 1.6E+02 0.0054 23.4 7.5 50 280-329 88-143 (235)
325 4g8k_A 2-5A-dependent ribonucl 36.3 2E+02 0.0067 24.3 14.3 52 36-92 28-82 (337)
326 2fe3_A Peroxide operon regulat 36.3 1.1E+02 0.0037 22.4 6.4 60 154-214 13-72 (145)
327 3mkr_B Coatomer subunit alpha; 35.8 2.1E+02 0.007 24.4 8.8 67 319-399 180-248 (320)
328 3ygs_P Procaspase 9; apoptosis 35.1 46 0.0016 22.4 3.8 33 113-145 53-85 (97)
329 3eyy_A Putative iron uptake re 34.5 1.1E+02 0.0037 22.4 6.1 61 19-82 8-68 (145)
330 4b4t_O 26S proteasome regulato 34.5 2.4E+02 0.0082 24.9 9.7 57 271-327 83-154 (393)
331 3jxi_A Vanilloid receptor-rela 34.4 30 0.001 28.2 3.4 54 37-91 9-71 (260)
332 2r9g_A AAA ATPase, central reg 34.3 1.7E+02 0.0057 22.9 9.0 63 132-195 15-85 (204)
333 2w57_A Ferric uptake regulatio 34.0 1.4E+02 0.0048 21.9 6.8 62 19-82 6-68 (150)
334 1mzb_A Ferric uptake regulatio 33.9 1.3E+02 0.0045 21.6 6.7 62 19-82 7-69 (136)
335 1bd8_A P19INK4D CDK4/6 inhibit 32.8 85 0.0029 22.7 5.6 15 6-20 10-24 (156)
336 3bu8_A Telomeric repeat-bindin 32.4 1E+02 0.0036 24.4 5.7 53 316-368 88-147 (235)
337 3ljn_A Hypothetical protein; a 32.4 1.6E+02 0.0054 25.3 8.1 58 206-263 58-115 (364)
338 2rfa_A Transient receptor pote 32.0 1.8E+02 0.0062 22.7 8.0 17 75-91 43-59 (232)
339 2fe3_A Peroxide operon regulat 31.1 1.5E+02 0.0052 21.5 7.6 62 19-82 11-72 (145)
340 4ets_A Ferric uptake regulatio 30.7 1.7E+02 0.0058 21.9 7.5 70 11-82 13-85 (162)
341 2fu4_A Ferric uptake regulatio 30.0 1.1E+02 0.0037 19.4 6.9 60 153-213 7-67 (83)
342 2xig_A Ferric uptake regulatio 29.2 1.7E+02 0.0058 21.5 7.8 61 153-214 17-77 (150)
343 2xig_A Ferric uptake regulatio 29.2 1.7E+02 0.0058 21.5 6.8 63 117-179 15-77 (150)
344 2ijq_A Hypothetical protein; s 29.2 1.8E+02 0.0062 21.8 8.7 54 310-363 42-103 (161)
345 3bge_A Predicted ATPase; struc 29.1 2.1E+02 0.007 22.4 7.7 45 133-177 9-56 (201)
346 2w57_A Ferric uptake regulatio 27.4 1.8E+02 0.0063 21.3 6.6 61 153-214 7-68 (150)
347 1mzb_A Ferric uptake regulatio 27.1 1.7E+02 0.006 20.9 6.5 59 154-213 9-68 (136)
348 2cfu_A SDSA1; SDS-hydrolase, l 26.9 1.8E+02 0.0062 27.9 7.8 45 340-384 454-498 (658)
349 2p1h_A APAF-1, apoptotic prote 26.0 1.4E+02 0.0049 19.6 6.5 37 211-247 49-85 (94)
350 3b7b_A Euchromatic histone-lys 25.5 2.4E+02 0.0082 22.0 9.1 50 73-123 15-67 (237)
351 3u84_A Menin; MLL, JUND, ledgf 25.1 3.7E+02 0.013 24.0 8.9 67 354-441 298-370 (550)
352 2o03_A Probable zinc uptake re 24.3 1.2E+02 0.0041 21.6 4.8 44 235-278 16-59 (131)
353 1bpo_A Protein (clathrin); cla 24.1 4.1E+02 0.014 24.2 9.5 107 251-360 348-454 (494)
354 2r9g_A AAA ATPase, central reg 23.9 2.6E+02 0.009 21.9 10.8 33 241-274 26-58 (204)
355 3bqo_A Telomeric repeat-bindin 23.7 1.2E+02 0.0042 23.6 4.7 18 309-326 126-143 (211)
356 2o03_A Probable zinc uptake re 23.1 1.7E+02 0.0059 20.7 5.4 47 35-82 15-61 (131)
357 3eyy_A Putative iron uptake re 23.1 2E+02 0.007 20.9 5.9 58 154-213 10-67 (145)
358 3ctd_A Putative ATPase, AAA fa 23.1 2.8E+02 0.0096 21.9 8.4 97 126-223 30-134 (213)
359 1wgl_A TOLL-interacting protei 23.0 74 0.0025 19.1 2.8 25 380-404 34-58 (59)
360 1ug3_A EIF4GI, eukaryotic prot 22.6 3.7E+02 0.013 23.1 10.0 25 203-227 16-40 (339)
361 3mwm_A ZUR, putative metal upt 22.5 1.6E+02 0.0056 21.2 5.2 47 35-82 18-64 (139)
362 3ubw_A 14-3-3E, 14-3-3 protein 22.0 3.3E+02 0.011 22.3 9.9 59 234-292 36-95 (261)
363 3qye_A TBC1 domain family memb 20.1 4E+02 0.014 22.6 9.9 41 184-224 209-249 (331)
364 3qye_A TBC1 domain family memb 20.0 4E+02 0.014 22.6 9.1 129 10-143 164-309 (331)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-37 Score=301.50 Aligned_cols=387 Identities=12% Similarity=0.033 Sum_probs=321.5
Q ss_pred hhchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
+..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|+++ .|..+++.+.. .+++..+++.++.+|.+.|+
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYA-RAKCLLTKEDL--YNRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHH-HHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHH-HHHHHHHHHhc--cccchhHHHHHHHHHHHHhh
Confidence 5678899999999999999986 4488889999999999999999 89999987754 36788899999999999999
Q ss_pred HHHHHHHhccCCCC-------------------ChhhHHHHHHHHHcCCChHHHHHHhccCCC-----------------
Q 047840 82 MGTARALFDKSPDR-------------------DVVTWTTMVDGYGKMGDFENARELFEKMPE----------------- 125 (445)
Q Consensus 82 ~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------- 125 (445)
+++|..+|+++... +..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 99999999965443 377899999999999999888888877631
Q ss_pred ---------------------------------------------------------CChhhHHHHHHHHHhcCCHhHHH
Q 047840 126 ---------------------------------------------------------RNAVSWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 126 ---------------------------------------------------------~~~~~~~~l~~~~~~~~~~~~a~ 148 (445)
++..+|+.++..|.+.|++++|+
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 34556667777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--
Q 047840 149 SLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN-- 226 (445)
Q Consensus 149 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 226 (445)
++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.+
T Consensus 326 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 326 AITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777777654 2366677777777777777777777777777554 55678888888999999999999999987643
Q ss_pred -CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHH
Q 047840 227 -KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305 (445)
Q Consensus 227 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 305 (445)
.+..+|+.++..|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|..
T Consensus 404 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 480 (597)
T 2xpi_A 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNE 480 (597)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 467789999999999999999999999988764 347788888999999999999999999999864 2446788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGG----LGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|+++.++..++.+|
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 560 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 999999999999999999988765 55676 788999999999999999999999999999998889999999999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
.+.|++++|.+.++++.+.
T Consensus 561 ~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 561 LHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.4e-35 Score=285.95 Aligned_cols=376 Identities=13% Similarity=0.019 Sum_probs=322.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047840 9 NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARAL 88 (445)
Q Consensus 9 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 88 (445)
|.+..+...+..+. .++...|+.++..+.+.|+++ .|..+++.+.. ..|+..++..++.+|.+.|++++|..+
T Consensus 67 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 67 GSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYK-CAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccCCCCCccccch----HHHHHHHHHHHHHHHHccCch-HHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 44444444444332 257788999999999999999 99999999986 456888999999999999999999999
Q ss_pred hccCC--CCChhhHHHHHHHHHcCCChHHHHHHhccCCCC-------------------ChhhHHHHHHHHHhcCCHhHH
Q 047840 89 FDKSP--DRDVVTWTTMVDGYGKMGDFENARELFEKMPER-------------------NAVSWSAIMAAYSRISDFKEV 147 (445)
Q Consensus 89 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a 147 (445)
|+++. .++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|
T Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 140 LTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 99984 578999999999999999999999999965433 478999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHH--------------------------------------HHHHHccCChhHHHHHHHHH
Q 047840 148 LSLFRQMQEVGMKPNESGLVSV--------------------------------------LTACAHLGAITQGLWVHSYA 189 (445)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~ 189 (445)
++.|++|.+.+.. +...+..+ +..|.+.|++++|.++|+++
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 298 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHh
Confidence 9999999886422 33333322 44566789999999999999
Q ss_pred HHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 047840 190 KRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETT 266 (445)
Q Consensus 190 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 266 (445)
.+. +++..+++.++.+|.+.|++++|..+|+++.+ .+..+++.++.++.+.|++++|..+++++.... +.+..+
T Consensus 299 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 375 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVT 375 (597)
T ss_dssp TTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHH
T ss_pred hcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHH
Confidence 876 58899999999999999999999999998853 477899999999999999999999999998763 457889
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+|.
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 999999999999999999999999864 23457899999999999999999999999998876 678899999999999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+.|++++|.++|+++.+..|.++.++..++.+|.+.|++++|.++++++.+.
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999876
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.6e-30 Score=236.00 Aligned_cols=372 Identities=10% Similarity=0.043 Sum_probs=321.7
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCc-ccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNN-YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
..+.+.|++++|+..++.+.+.. |+. ..+..+...+...|+++ .+...++...+.. +.+..+|..+...|.+.|+
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~-~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLD-RSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 35678999999999999998754 654 45556667778899999 9999999888754 5677899999999999999
Q ss_pred HHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 047840 82 MGTARALFDKSPD--R-DVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQ 155 (445)
Q Consensus 82 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 155 (445)
+++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998753 4 556799999999999999999999998864 4 45567788889999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhH
Q 047840 156 EVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAW 232 (445)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~ 232 (445)
+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++... .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 863 3367889999999999999999999999999886 55678888999999999999999999986643 467789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
..+...+...|++++|+..|+++.+.+. .+..++..+...+.+.|++++|...++++.+. .+.+..++..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 9999999999999999999999988642 35778899999999999999999999999874 35678889999999999
Q ss_pred cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 313 AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.|++++|...++++.+.. +.+..++..++.++.+.|++++|...|+++++..|.++.++..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999998765 66788999999999999999999999999999999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.5e-28 Score=225.24 Aligned_cols=354 Identities=12% Similarity=0.056 Sum_probs=311.3
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCCh
Q 047840 37 IKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDF 113 (445)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 113 (445)
...+.+.|+++ .|...++.+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~-~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFE-AAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 45677889999 9999999888764 34556777888889999999999999987643 4677899999999999999
Q ss_pred HHHHHHhccCCC--C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 047840 114 ENARELFEKMPE--R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAK 190 (445)
Q Consensus 114 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 190 (445)
++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998864 4 56679999999999999999999999998864 2245677788889999999999999999999
Q ss_pred HcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 047840 191 RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTF 267 (445)
Q Consensus 191 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 267 (445)
+.. +.+..++..+..++.+.|++++|...|+++.. .+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 55678899999999999999999999998754 356788899999999999999999999998863 2367888
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 268 VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 268 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
..+...+...|++++|...++++.+. .+.+..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999999999999999999999864 23357789999999999999999999999998876 7789999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.|++++|.+.++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998763
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.1e-29 Score=236.69 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=124.1
Q ss_pred HHHHhccCCC----C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---------hhH
Q 047840 116 ARELFEKMPE----R-NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA---------ITQ 181 (445)
Q Consensus 116 A~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~ 181 (445)
+..+.+++.+ + ....++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444555543 1 2335788889999999999999999999988999999999999999886654 577
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
|.++|++|...|+.||..+|+++|.+|++.|++++|.+ +|++|.+.|+.
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~-------------------------------l~~~M~~~g~~ 137 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFD-------------------------------MVKQMKAFGIQ 137 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHH-------------------------------HHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHH-------------------------------HHHHHHHcCCC
Confidence 88888888888888887777777666666655555554 55555555555
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
||..||+.+|.+|++.|++++|.++|++|.+. |+.||..+|++|+.+|++.|++++|.+++++|.+.+..|+..||+.+
T Consensus 138 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l 216 (501)
T 4g26_A 138 PRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216 (501)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHH
T ss_pred CccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 55555555555555555555555555555544 55555555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 047840 342 LSACR 346 (445)
Q Consensus 342 ~~~~~ 346 (445)
+..|.
T Consensus 217 ~~~F~ 221 (501)
T 4g26_A 217 EEWFK 221 (501)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.5e-29 Score=235.78 Aligned_cols=183 Identities=15% Similarity=0.191 Sum_probs=149.4
Q ss_pred hhHHHHHHHHHcCCChHHHHHHhccCC----CCChhhHHHHHHHHHhcCC---------HhHHHHHHHHHHHcCCCCCHH
Q 047840 98 VTWTTMVDGYGKMGDFENARELFEKMP----ERNAVSWSAIMAAYSRISD---------FKEVLSLFRQMQEVGMKPNES 164 (445)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~p~~~ 164 (445)
..++.+|++|++.|++++|+++|++|. .||..+||+||.+|.+.+. .++|.++|++|...|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 468899999999999999999999997 4899999999999987765 688999999999999999999
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (445)
||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.| +
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-------------------------------~ 155 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-------------------------------D 155 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-------------------------------C
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-------------------------------C
Confidence 999999999999999999999999999999998887777666655554 5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR 312 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (445)
+++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+. +..|+..||+.++..|+.
T Consensus 156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 5566666666666666666666666666666666666666666666655 666666666666666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=213.64 Aligned_cols=388 Identities=8% Similarity=-0.052 Sum_probs=309.8
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..+.+.|++++|+..|+++.+.+ |+..+|..+..++...|+++ .|...++.+.+.+ +.+...+..+..++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLK-KVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHH-HHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 35778999999999999999866 89999999999999999999 9999999999875 45667899999999999999
Q ss_pred HHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHH--------------------------------------Hhc
Q 047840 83 GTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARE--------------------------------------LFE 121 (445)
Q Consensus 83 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~--------------------------------------~~~ 121 (445)
++|...|+++.. ++......++..+........+.+ .+.
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 999999987643 233333333333322211111111 111
Q ss_pred cCCC---------C-ChhhHHHHHHHHHh---cCCHhHHHHHHHHHHH-----cCCC--------CCHHHHHHHHHHHHc
Q 047840 122 KMPE---------R-NAVSWSAIMAAYSR---ISDFKEVLSLFRQMQE-----VGMK--------PNESGLVSVLTACAH 175 (445)
Q Consensus 122 ~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------p~~~~~~~l~~~~~~ 175 (445)
.... | +...+......+.. .|++++|+..|+++.. ..-. .+..++..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 1110 1 14444445555554 8999999999999887 3111 235677888899999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.|++++|...++++.+.... ..++..+..++...|++++|...++++.. .+..++..+...+...|++++|+..+
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999988633 88888999999999999999999987654 36678899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG- 331 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 331 (445)
+++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+...
T Consensus 328 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 328 DKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 99988643 35678888899999999999999999999874 234567888899999999999999999999876431
Q ss_pred CCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 332 GGD----ANVWGALLSACRI---YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 332 ~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.++ ..++..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 122 4489999999999 9999999999999999999999999999999999999999999999988754
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.1e-25 Score=209.40 Aligned_cols=362 Identities=10% Similarity=0.003 Sum_probs=286.7
Q ss_pred ccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHH
Q 047840 31 YTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGY 107 (445)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 107 (445)
..+......+...|+++ .|...|+.+.+.. |+..++..+..++...|++++|...|+++.+ .+..+|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~-~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYD-DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH-HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 34666778889999999 9999999999975 6899999999999999999999999997653 3667899999999
Q ss_pred HcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHH-----------------------------
Q 047840 108 GKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQ----------------------------- 155 (445)
Q Consensus 108 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------------------------- 155 (445)
.+.|++++|...|+++.. ++......++..+........+.+.+..+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998753 233333344433333222222222221110
Q ss_pred ------HcCC---------CCCHHHHHHHHHHHHc---cCChhHHHHHHHHHHH-----cCC--------CCchhhhhHH
Q 047840 156 ------EVGM---------KPNESGLVSVLTACAH---LGAITQGLWVHSYAKR-----YHL--------EKNVILATAV 204 (445)
Q Consensus 156 ------~~~~---------~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 204 (445)
.... +.+...+......+.. .|++++|...++++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 0000 1124444555554544 8999999999999988 311 2345688889
Q ss_pred HHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHH
Q 047840 205 VDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD 282 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 282 (445)
..++...|++++|...|+++.. |+...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999987753 347788889999999999999999999998864 3366788889999999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 283 GLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 283 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
|...++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 323 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999864 24457788889999999999999999999988765 5677889999999999999999999999999
Q ss_pred HhCCCCch------hHHHHHHHHHH---cCChHHHHHHHHHHHhcC
Q 047840 363 EMGITDFS------THVLSYNIYKE---AGWDMEANKVRKLISETG 399 (445)
Q Consensus 363 ~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~ 399 (445)
+..|.++. ++..++.++.. .|++++|.+.++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 98887654 89999999999 999999999999987653
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.6e-24 Score=202.38 Aligned_cols=323 Identities=14% Similarity=0.074 Sum_probs=232.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHH
Q 047840 65 DPFVVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAY 138 (445)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 138 (445)
+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++.+ .+..++..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344455555555555666666555554432 2445555566666666666666666665543 2455666677777
Q ss_pred HhcCCHhHHHHHHHHHHHcCCCCC-H---HHHHHH------------HHHHHccCChhHHHHHHHHHHHcCCCCchhhhh
Q 047840 139 SRISDFKEVLSLFRQMQEVGMKPN-E---SGLVSV------------LTACAHLGAITQGLWVHSYAKRYHLEKNVILAT 202 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~p~-~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (445)
.+.|++++|.+.|+++... .|+ . ..+..+ ...+...|++++|...++++.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777777653 233 2 333333 344777788888888888887764 45667777
Q ss_pred HHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAV--------- 270 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--------- 270 (445)
.++.+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++..... .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 788888888888888888877643 4677888888888888888999888888876532 233334333
Q ss_pred ---HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 271 ---LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 271 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
...+.+.|++++|...|+.+... .|+ ...+..+..++.+.|++++|...++++.+.. +.+..+|..++
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 67888999999999999999865 444 4477888999999999999999999988765 56789999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH------------HHHcC-----ChHHHHHHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI------------YKEAG-----WDMEANKVRKLI 395 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 395 (445)
.+|...|++++|...++++++..|.++.++..++.+ |...| +.+++.+.++++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999999888888844 44445 555667777653
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.1e-24 Score=198.52 Aligned_cols=365 Identities=11% Similarity=0.040 Sum_probs=282.4
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhcc
Q 047840 12 KLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDK 91 (445)
Q Consensus 12 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 91 (445)
..+...+....... +.+...+..+...+.+.|+++ .|..+++.+.+.. +.+..++..+..++...|++++|...|++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~-~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLA-DALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555555432 345667888889999999999 9999999998864 45688899999999999999999999998
Q ss_pred CCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--CC-h---hhHHHH------------HHHHHhcCCHhHHHHH
Q 047840 92 SPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--RN-A---VSWSAI------------MAAYSRISDFKEVLSL 150 (445)
Q Consensus 92 ~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l------------~~~~~~~~~~~~a~~~ 150 (445)
+.+ .+..++..+..+|.+.|++++|...|+++.. |+ . ..+..+ ...+...|++++|+..
T Consensus 86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 754 3577889999999999999999999999875 32 3 555555 4458899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--C-
Q 047840 151 FRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--K- 227 (445)
Q Consensus 151 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~- 227 (445)
|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++.+|...|++++|...|+++.. |
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99998764 4478889999999999999999999999998875 56788999999999999999999999998754 2
Q ss_pred ChhhHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 047840 228 DAGAWNAM------------ISGVAMNGDAKKSLELFDRMVKSGTQPT-----ETTFVAVLTTCTHAKMVRDGLNLFENM 290 (445)
Q Consensus 228 ~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (445)
+...+..+ ...+...|++++|+..|+++.+.. |+ ...+..+...+.+.|++++|...++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44445444 788999999999999999998853 44 347888889999999999999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------HHHcC-----ChHH
Q 047840 291 SAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA------------CRIYG-----KIEV 353 (445)
Q Consensus 291 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~ 353 (445)
... .+.+...|..+..+|...|++++|...++++.+.. +.+...+..+..+ |...| +.++
T Consensus 322 ~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 322 LQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 864 24468899999999999999999999999998765 5567777777643 33334 5677
Q ss_pred HHHHHHH-HHHhCCCCch----------hHHHHHHHHHHcCChH
Q 047840 354 GNRVWRK-LAEMGITDFS----------THVLSYNIYKEAGWDM 386 (445)
Q Consensus 354 a~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~ 386 (445)
+.+.+++ .++..|++.. .+..+..+|...|+.+
T Consensus 399 ~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 399 IIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHH
Confidence 8888887 6667775321 3344555555555543
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=4.3e-23 Score=197.27 Aligned_cols=386 Identities=7% Similarity=-0.041 Sum_probs=293.6
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
..+.+.|++++|+..|+++.+.. +.+..+|..+..++...|+++ .|...++.+.+.. +.+...+..+..++...|++
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLE-KVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH-HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 35778999999999999998855 346678888899999999999 9999999998875 44677888999999999999
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccC-------------------------------------CC
Q 047840 83 GTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKM-------------------------------------PE 125 (445)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------------------------~~ 125 (445)
++|...|+.+ ..++......+..+...+...+|...++.+ ..
T Consensus 110 ~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 110 TDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 9999999633 222222222222333333334444444443 22
Q ss_pred CChh---hHHHHHHHHHh--------cCCHhHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHccCChhHHHHHH
Q 047840 126 RNAV---SWSAIMAAYSR--------ISDFKEVLSLFRQMQEVGMKPN--------ESGLVSVLTACAHLGAITQGLWVH 186 (445)
Q Consensus 126 ~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~ 186 (445)
.+.. ....+...+.. .|++++|..+|+++.+.. |+ ..++..+...+...|++++|...+
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 2111 22233322222 247899999999988753 43 234666777888899999999999
Q ss_pred HHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 187 SYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 187 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
+++.+.. |+...+..+...+...|++++|...|+++.. .+..++..+...+...|++++|+..++++.+... .+
T Consensus 267 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~ 343 (537)
T 3fp2_A 267 QESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-EN 343 (537)
T ss_dssp HHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CC
Confidence 9999875 4478888899999999999999999987653 4677899999999999999999999999988643 25
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-----CCCCHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL-----GGGDANVW 338 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~ 338 (445)
...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...++++.+.. .......+
T Consensus 344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 344 VYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 677888889999999999999999999875 24456788889999999999999999999976542 11122335
Q ss_pred HHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 339 GALLSACRIY----------GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 339 ~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
......+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5556777777 999999999999999999999999999999999999999999999988754
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7.3e-21 Score=171.80 Aligned_cols=291 Identities=11% Similarity=0.023 Sum_probs=157.3
Q ss_pred HHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047840 101 TTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177 (445)
Q Consensus 101 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (445)
..+...+...|++++|...|+++.+ .+..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 7 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcC
Confidence 3333444444444444444443321 123344444444444555555555554444432 113344444444444555
Q ss_pred ChhHHHHHHHHHHHcCCC---CchhhhhHH------------HHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHH
Q 047840 178 AITQGLWVHSYAKRYHLE---KNVILATAV------------VDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGV 239 (445)
Q Consensus 178 ~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 239 (445)
++++|...++++.+.. + .+...+..+ ...+...|++++|...++++.+ .+...+..+...+
T Consensus 86 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5555555554444432 1 122222222 3555566666666666655432 2445555666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHH------------HH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYA------------CV 306 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~------------~l 306 (445)
...|++++|+..++++.+.. +.+..++..+...+...|++++|...++.+.+. .|+ ...+. .+
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 234555666666666666666666666666643 222 22221 22
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDA----NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++++..|.++.++..++.++...
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 455666777777777777766544 2233 22444566677777777777777777777777777777777777777
Q ss_pred CChHHHHHHHHHHHhc
Q 047840 383 GWDMEANKVRKLISET 398 (445)
Q Consensus 383 g~~~~A~~~~~~m~~~ 398 (445)
|++++|.+.+++..+.
T Consensus 320 g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 7777777777766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=2.1e-21 Score=175.42 Aligned_cols=308 Identities=12% Similarity=0.047 Sum_probs=219.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHhccCCC--C-ChhhHHHHHHHHHhc
Q 047840 68 VVSSLLEFYSLVHKMGTARALFDKSPD---RDVVTWTTMVDGYGKMGDFENARELFEKMPE--R-NAVSWSAIMAAYSRI 141 (445)
Q Consensus 68 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 141 (445)
.+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...|+++.+ | +...|..+...+...
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 344444455555555555555554322 2344555555555555555555555555442 2 455666667777777
Q ss_pred CCHhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 142 SDFKEVLSLFRQMQEVGMKP----NESGLVSV------------LTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 142 ~~~~~a~~~~~~~~~~~~~p----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
|++++|...|++..+. .| +...+..+ ...+...|++++|...++++.+.. +.+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 7777777777776653 33 23333333 466778888888888888887765 45667777888
Q ss_pred HHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH------------HH
Q 047840 206 DMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFV------------AV 270 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~l 270 (445)
.++...|++++|...++++.. .+..++..+...+...|++++|...+++..+.... +...+. .+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHH
Confidence 888888888888888876644 35667888888888889999999999888775322 333322 23
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhhCCCCC-h----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVYGVEPQ-L----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
...+.+.|++++|...++.+... .|+ . ..+..+..++...|++++|...+++..+.. +.+..++..+...+
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 55688899999999999999875 343 2 234557788999999999999999998765 66889999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
...|++++|.+.|+++++..|+++.++..+..+....+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888877765443
No 14
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5e-21 Score=173.73 Aligned_cols=259 Identities=10% Similarity=-0.046 Sum_probs=178.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4444444444444444444444444432 2233444444444444444444444444444443 2334444444444444
Q ss_pred cCChHHHHHHhhcCCCC---ChhhHH---------------HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 047840 211 CGHVHSALSVFEGISNK---DAGAWN---------------AMISGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVL 271 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~---~~~~~~---------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~ 271 (445)
.|++++|...|+++... +...+. ..+..+...|++++|+..++++.+..... +..++..+.
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~ 224 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 224 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHH
Confidence 44444444444433221 111111 02233348899999999999998864321 578899999
Q ss_pred HHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
..+...|++++|...++++... .+.+...+..+..++...|++++|...++++.+.. +.+..++..+..++...|++
T Consensus 225 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 301 (368)
T 1fch_A 225 VLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAH 301 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH
Confidence 9999999999999999999864 24457889999999999999999999999998766 66789999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-----------chhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 352 EVGNRVWRKLAEMGITD-----------FSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
++|...|+++++..|.+ ..++..++.+|...|++++|..++++
T Consensus 302 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 302 REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999988876 78899999999999999999988763
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2.9e-20 Score=177.60 Aligned_cols=363 Identities=10% Similarity=0.020 Sum_probs=272.2
Q ss_pred hchhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhH-------------
Q 047840 3 RGYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVV------------- 69 (445)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------- 69 (445)
..|.+.|++++|+..|+++.+.+ +.+..++..+..++...|+++ .|...++ .......+.....
T Consensus 67 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~-~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 67 ACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFT-DAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH-HHHHHHH-HHC-----------CHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHH-HHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHH
Confidence 46788999999999999999865 335678888899999999999 8999886 3322211111110
Q ss_pred --------------------HHHHHHHHhcCCHHHHHHHhccCCCCChh---hHHHHHHHHHcC--------CChHHHHH
Q 047840 70 --------------------SSLLEFYSLVHKMGTARALFDKSPDRDVV---TWTTMVDGYGKM--------GDFENARE 118 (445)
Q Consensus 70 --------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~ 118 (445)
...+..+....+.+.+...+......+.. ....+...+... |++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 11112222233333333333333332221 233333333222 47899999
Q ss_pred HhccCCC--CC--------hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 047840 119 LFEKMPE--RN--------AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSY 188 (445)
Q Consensus 119 ~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 188 (445)
+|+++.+ |+ ..++..+...+...|++++|...|++.... .|+...+..+...+...|++++|...+++
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9998875 32 235677778899999999999999999885 46688899999999999999999999999
Q ss_pred HHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 047840 189 AKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET 265 (445)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 265 (445)
+.+.. +.+..++..+..++...|++++|...|+++.. .+...+..+...+...|++++|+..++++.+.. +.+..
T Consensus 302 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 302 AVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred HhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 99876 55778899999999999999999999987753 466789999999999999999999999998874 33567
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhc----------CChHHHHHHHHHHhcCCC
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARA----------GMVEEAEKFIEEKMGGLG 331 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 331 (445)
.+..+...+...|++++|...++.+.+...-.++ ...+..+...+... |++++|...|+++.+..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 8888899999999999999999998865211111 12234455677777 99999999999998776
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
+.+..++..+...+...|++++|.+.|+++.+..|.+.....
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 677899999999999999999999999999999998765543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.2e-20 Score=166.64 Aligned_cols=286 Identities=9% Similarity=0.006 Sum_probs=195.2
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTA 172 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 172 (445)
+...+..+...+...|++++|..+|+++.. .+...+..++..+...|++++|...++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 334444555555555555555555555432 234445556666666677777777777666542 2245566666666
Q ss_pred HHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHH
Q 047840 173 CAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 173 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 248 (445)
+...| ++++|...++++.+.. +.+...+..+..++...|++++|...|+++.. .+...+..+...+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 66666 6777777777666554 33455666666777777777777777665543 2445666677777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC-------CCCChhHHHHHHHHHHhcCChHHHHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG-------VEPQLEHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~ 321 (445)
...+++..+.. +.+...+..+...+...|++++|...++++..... .+.....+..+..+|...|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888777653 33566777777778888888888888887775421 13335677888888888888888888
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHcCCh
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY-KEAGWD 385 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 385 (445)
.+++..+.. +.+..++..+...+...|++++|.+.++++.+..|+++.++..++.++ ...|+.
T Consensus 258 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 258 YHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888887665 556778888888888888888888888888888888888888888877 345553
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.3e-19 Score=161.55 Aligned_cols=268 Identities=13% Similarity=0.010 Sum_probs=232.6
Q ss_pred CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 126 RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888899999999999999999998764 3356677778888999999999999999999875 55788899999
Q ss_pred HHHHccC-ChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH
Q 047840 206 DMYSKCG-HVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR 281 (445)
Q Consensus 206 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 281 (445)
..+...| ++++|...|++... .+...|..+...+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999987654 35678999999999999999999999999887433 4566777888999999999
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC--------CCCCHHHHHHHHHHHHHcCChHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL--------GGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+|...++.+... .+.+...+..+...+...|++++|...++++.+.. .+.+..++..+...+...|++++
T Consensus 177 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999863 34557888999999999999999999999886531 13446789999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
|...++++++..|.++.++..++.++.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999977543
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=1e-18 Score=164.73 Aligned_cols=360 Identities=13% Similarity=-0.007 Sum_probs=193.2
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHhhh----cCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----cCCHHHHH
Q 047840 15 VFCYLDMLDMGFEPNNYTFPPLIKACVI----LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL----VHKMGTAR 86 (445)
Q Consensus 15 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 86 (445)
+..++...+.| ++..+..+...+.. .++++ .|..+++...+.| +...+..|...|.. .+++++|.
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLT-QAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 44444444432 44444455555544 45555 5666666555543 34455555555555 55666666
Q ss_pred HHhccCCCC-ChhhHHHHHHHHHc----CCChHHHHHHhccCCCC-ChhhHHHHHHHHHh----cCCHhHHHHHHHHHHH
Q 047840 87 ALFDKSPDR-DVVTWTTMVDGYGK----MGDFENARELFEKMPER-NAVSWSAIMAAYSR----ISDFKEVLSLFRQMQE 156 (445)
Q Consensus 87 ~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 156 (445)
..|++..+. ++..+..|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|++.|++..+
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 666554332 44455555555555 55666666666555432 44455555555554 5566666666666555
Q ss_pred cCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc----cCChHHHHHHhhcCCC-C
Q 047840 157 VGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK----CGHVHSALSVFEGISN-K 227 (445)
Q Consensus 157 ~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~ 227 (445)
.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|.. .+++++|..+|++..+ .
T Consensus 180 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 180 QG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred CC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 43 44555555555554 556666666666655544 33444555555554 5566666666655433 2
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC-----CcHHHHHHHHHHhHHhhCCCC
Q 047840 228 DAGAWNAMISGVAM----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA-----KMVRDGLNLFENMSAVYGVEP 298 (445)
Q Consensus 228 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~ 298 (445)
+..++..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|...|++..+. .
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~ 326 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G 326 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C
Confidence 44455555555555 556666666666655443 233444444444443 5666666666665542 1
Q ss_pred ChhHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchh
Q 047840 299 QLEHYACVVDLLARAG---MVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
+...+..+...|...| ++++|.+.|++..+.+ ++..+..+...|.. .+++++|.+.|+++.+.+ ++.+
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 3344445555555444 5556666666655442 44555555555555 556666666666665543 3445
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhcC
Q 047840 372 HVLSYNIYKE----AGWDMEANKVRKLISETG 399 (445)
Q Consensus 372 ~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 399 (445)
+..++.+|.. .+++++|...+++..+.+
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5556666665 566666666666655544
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=3.6e-20 Score=167.92 Aligned_cols=263 Identities=8% Similarity=-0.055 Sum_probs=199.5
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (445)
+...+..+...+.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34456666777777777777777777776643 3356667777777777777777777777777664 445666777777
Q ss_pred HHHccCChHHHHHHhhcCCCCC-------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKD-------------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLT 272 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~ 272 (445)
+|...|++++|...|+++...+ ...+..+...+...|++++|+..++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7777777777777776654311 223344578889999999999999999887432 26788999999
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
.+...|++++|...++++.+. .+.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999875 24468889999999999999999999999998776 567899999999999999999
Q ss_pred HHHHHHHHHHHhCCC------------CchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGIT------------DFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
+|...|+++++..|. +..++..++.++...|+.+.+..+.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999997765 367889999999999999998887754
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=6.2e-18 Score=159.37 Aligned_cols=337 Identities=12% Similarity=0.033 Sum_probs=282.9
Q ss_pred cCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhh----cCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHh----c
Q 047840 8 ANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVI----LGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSL----V 79 (445)
Q Consensus 8 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 79 (445)
.+++++|+.+|++..+.| ++..+..+...+.. .++++ .|..+++...+.| +...+..|...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~-~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYA-QAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH-HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 789999999999998865 56677778888877 88898 9999999998865 56777788888888 7
Q ss_pred CCHHHHHHHhccCCCC-ChhhHHHHHHHHHc----CCChHHHHHHhccCCC-CChhhHHHHHHHHHh----cCCHhHHHH
Q 047840 80 HKMGTARALFDKSPDR-DVVTWTTMVDGYGK----MGDFENARELFEKMPE-RNAVSWSAIMAAYSR----ISDFKEVLS 149 (445)
Q Consensus 80 g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~ 149 (445)
+++++|...|++..++ ++..+..+...|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|.+
T Consensus 129 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 8999999999886554 66778888888887 7899999999998765 477788888888888 899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc----cCChHHHHHHh
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK----CGHVHSALSVF 221 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 221 (445)
.|++..+.| +...+..+...+.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 999998865 56777788888875 789999999999998875 45566777778877 89999999999
Q ss_pred hcCCC-CChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC---cHHHHHHHHHHhHH
Q 047840 222 EGISN-KDAGAWNAMISGVAMN-----GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK---MVRDGLNLFENMSA 292 (445)
Q Consensus 222 ~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~ 292 (445)
++..+ .+..++..+...|... +++++|+..|++..+.| +...+..+...|...| +.++|..+|++..+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88765 4677888888888887 89999999999998875 4556667777776656 88999999999986
Q ss_pred hhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHh
Q 047840 293 VYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 364 (445)
. .+...+..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .++.++|...|+++.+.
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4 467788888888988 899999999999998765 57788889999988 89999999999999999
Q ss_pred CCC
Q 047840 365 GIT 367 (445)
Q Consensus 365 ~~~ 367 (445)
+|+
T Consensus 433 ~~~ 435 (490)
T 2xm6_A 433 DMN 435 (490)
T ss_dssp HCC
T ss_pred CCC
Confidence 876
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=1.3e-18 Score=151.58 Aligned_cols=269 Identities=12% Similarity=0.048 Sum_probs=205.4
Q ss_pred HHcCCChHHHHHHhccCCCCC----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 107 YGKMGDFENARELFEKMPERN----AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
....|+++.|+..+++....+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHH
Confidence 345677777777776655432 22344566777888888887775543 1 345666777777777888888888
Q ss_pred HHHHHHHHHcCC-CCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 047840 183 LWVHSYAKRYHL-EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 183 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 261 (445)
.+.++++...+. |.+...+..+...+...|++++|...+++ ..+..++..++..+.+.|++++|.+.|+++.+..
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-- 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-- 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--
Confidence 888888777653 34556677777888999999999999988 5677889999999999999999999999998874
Q ss_pred CCHHHH---HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 262 PTETTF---VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 262 p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++++.. +.++.++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l 237 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETL 237 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 443211 22334445669999999999999975 45678889999999999999999999999998877 6788999
Q ss_pred HHHHHHHHHcCChHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 339 GALLSACRIYGKIEV-GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
..++..+...|+.++ +.++++++++..|+++.+. +...+.+.++++..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 999999999999976 6799999999999987544 34455555555544
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=4.1e-19 Score=158.21 Aligned_cols=259 Identities=8% Similarity=-0.038 Sum_probs=183.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..++..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 4444445555555555555555554432 2244444455555555555555555555555443 3344445555555555
Q ss_pred cCChHHHHHHhhcCCCC---ChhhHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 211 CGHVHSALSVFEGISNK---DAGAWNAM--------------IS-GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
.|++++|...++++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 55555555555443321 11222222 22 3677889999999999998874 337788889999
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
.+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999864 24457888999999999999999999999988766 567889999999999999999
Q ss_pred HHHHHHHHHHHhCCC------------CchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 353 VGNRVWRKLAEMGIT------------DFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
+|.+.++++.+..|. ++.++..++.++.+.|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999988 6788999999999999999999988644
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=3.8e-19 Score=158.45 Aligned_cols=285 Identities=11% Similarity=0.017 Sum_probs=138.0
Q ss_pred hcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTAR 86 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 86 (445)
+.|+.++|.++++++. ++.+|..+..++.+.|+++ .|...|.. .+|..+|..++..+...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~-eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVK-EAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHH-HHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4678999999999882 3358999999999999999 88888854 357778999999999999999999
Q ss_pred HHhccCCC--CChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 047840 87 ALFDKSPD--RDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES 164 (445)
Q Consensus 87 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 164 (445)
..++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ .
T Consensus 82 ~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 82 KYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp ---------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------T
T ss_pred HHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 98877665 4567889999999999999999888864 77789999999999999999999999976 3
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCC
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 244 (445)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6899999999999999999999988 278899999999999999999988877755 455555578899999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC------ChhHHHHHHHHHHhcCChHH
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP------QLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 318 (445)
+++|+.+++...... +-....|+.+..+|++- ++++..+.++....+-+++| +...|..+.-.|...++++.
T Consensus 223 ~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 223 FEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 999999999887653 44566677776666653 23444443333333224444 56788999999999999999
Q ss_pred HHHHHHH
Q 047840 319 AEKFIEE 325 (445)
Q Consensus 319 A~~~~~~ 325 (445)
|...+-+
T Consensus 301 A~~tm~~ 307 (449)
T 1b89_A 301 AIITMMN 307 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8886544
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.3e-17 Score=158.88 Aligned_cols=383 Identities=9% Similarity=0.024 Sum_probs=277.2
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHH-HhcCCHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFY-SLVHKMG 83 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 83 (445)
+.+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++ .|..+|+.++... |+...|...+... ...|+++
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~-~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYD-KVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHH-HHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchh
Confidence 356799999999999998743 335567888889899999999 9999999988853 6777777776533 3457776
Q ss_pred HHHH----HhccCC-----C-CChhhHHHHHHHHHc---------CCChHHHHHHhccCCC-CCh---hhHHHHHHHH--
Q 047840 84 TARA----LFDKSP-----D-RDVVTWTTMVDGYGK---------MGDFENARELFEKMPE-RNA---VSWSAIMAAY-- 138 (445)
Q Consensus 84 ~a~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~~~~l~~~~-- 138 (445)
.|.+ +|+... . ++...|...+....+ .|+++.|..+|++... |.. ..|.......
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 6654 665432 1 355677777776554 6889999999998775 321 2333222211
Q ss_pred -----------HhcCCHhHHHHHHHHHH------HcC---CCCCH--------HHHHHHHHHHHcc----CCh----hHH
Q 047840 139 -----------SRISDFKEVLSLFRQMQ------EVG---MKPNE--------SGLVSVLTACAHL----GAI----TQG 182 (445)
Q Consensus 139 -----------~~~~~~~~a~~~~~~~~------~~~---~~p~~--------~~~~~l~~~~~~~----~~~----~~a 182 (445)
...++++.|..++.... +.. ++|+. ..|...+...... ++. +.+
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 13456777877776532 111 34431 3444444333221 232 367
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHc-------cCChH-------HHHHHhhcCCC---C-ChhhHHHHHHHHHhcCC
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSK-------CGHVH-------SALSVFEGISN---K-DAGAWNAMISGVAMNGD 244 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~ 244 (445)
..+|+++.... +.+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 78898888864 5577888888888775 78887 89999987653 3 56789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHH-HHhcCChHHHH
Q 047840 245 AKKSLELFDRMVKSGTQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDL-LARAGMVEEAE 320 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~-~~~~g~~~~A~ 320 (445)
+++|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++..+. .|+ ...|...+.. +...|+.++|.
T Consensus 337 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 337 YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp HHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhHHH
Confidence 99999999999885 444 247888888888899999999999999853 333 3333322222 33689999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS----THVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+|+..++.. +.++..|..++..+.+.|+.++|..+|++++...|.++. .|...+......|+.+.+..+.+++.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999988765 567899999999999999999999999999998765544 77777888888999999999998887
Q ss_pred hc
Q 047840 397 ET 398 (445)
Q Consensus 397 ~~ 398 (445)
+.
T Consensus 491 ~~ 492 (530)
T 2ooe_A 491 TA 492 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=3.2e-20 Score=165.31 Aligned_cols=284 Identities=11% Similarity=0.106 Sum_probs=132.4
Q ss_pred hcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 047840 78 LVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEV 157 (445)
Q Consensus 78 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 157 (445)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 567888899988888554 48889999999999999999988664 56668888888888899999999977666553
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHH
Q 047840 158 GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMIS 237 (445)
Q Consensus 158 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 237 (445)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 4557778888899999999988887774 366778889999999999999999999877 47889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ..++.....++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999887 27888999999999999999996554432 223344556888899999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHcCChHHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIY--GKIEVGNRVWRKLAEMGI-----TDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
+|..+++..+... +.....|.-+..+|++- ++..+.++.|..-+...| .++..|..+.-.|...++++.|..
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999887665 55667777777777654 345555555554444444 566778888889999999998876
Q ss_pred HH
Q 047840 391 VR 392 (445)
Q Consensus 391 ~~ 392 (445)
.+
T Consensus 304 tm 305 (449)
T 1b89_A 304 TM 305 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=5.4e-19 Score=160.31 Aligned_cols=258 Identities=10% Similarity=0.020 Sum_probs=206.9
Q ss_pred HHhcCCHhHHHH-HHHHHHHcC---CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 138 YSRISDFKEVLS-LFRQMQEVG---MKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 138 ~~~~~~~~~a~~-~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
+...|++++|++ .|++..... ...+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688999988 887665421 11134567889999999999999999999999875 5678889999999999999
Q ss_pred hHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHhh
Q 047840 214 VHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVA---------------VLTTCT 275 (445)
Q Consensus 214 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~ 275 (445)
+++|...|+++.. .+..++..+...+...|++++|+..++++...... +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 9999999987653 46788999999999999999999999999886432 2222211 233334
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
..|++++|...++++.....-.++..++..+...|...|++++|...++++.+.. +.+..++..++..+...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999999762222257888999999999999999999999998766 667899999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..++++++..|.++.++..++.+|.+.|++++|...++++.+.
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998764
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=2.3e-18 Score=150.11 Aligned_cols=248 Identities=8% Similarity=0.017 Sum_probs=206.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccC
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNE--SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG 212 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 212 (445)
++-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999998876543 3443 4556778999999999999986654 24677888899999999999
Q ss_pred ChHHHHHHhhcCC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHH
Q 047840 213 HVHSALSVFEGIS----NK-DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287 (445)
Q Consensus 213 ~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (445)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 23 566777888999999999999999987 457788889999999999999999999
Q ss_pred HHhHHhhCCCCChhHH---HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 288 ENMSAVYGVEPQLEHY---ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
+.+.+. .|+.... ..++..+...|++++|..+|+++.+.. +.++..++.+..++...|++++|...|+++++.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999975 4553221 223344455699999999999999875 788999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChHH-HHHHHHHHHhc
Q 047840 365 GITDFSTHVLSYNIYKEAGWDME-ANKVRKLISET 398 (445)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 398 (445)
.|.++.++..++.++...|+.++ +.++++++.+.
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999987 56888888764
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=2.6e-18 Score=155.64 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISG 238 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 238 (445)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.. .+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568889999999999999999999999886 56788999999999999999999999997754 467799999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-----------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTE-----------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
|...|++++|+..|+++.+.. |+. ..+..+...+...|++++|..+++++.....-.++..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999998753 322 2233457788999999999999999997622222688899999
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
..|...|++++|...++++.+.. +.+..+|..+..+|...|++++|+..|+++++..|.++.++..++.+|.+.|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998776 67889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 047840 388 ANKVRKLISET 398 (445)
Q Consensus 388 A~~~~~~m~~~ 398 (445)
|...++++.+.
T Consensus 300 A~~~~~~al~~ 310 (365)
T 4eqf_A 300 AVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=8.3e-17 Score=153.23 Aligned_cols=374 Identities=9% Similarity=0.032 Sum_probs=269.0
Q ss_pred HHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C
Q 047840 18 YLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R 95 (445)
Q Consensus 18 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 95 (445)
|++.++.. +-+...|..++. +.+.|+++ .+..+++.+.+. .+.+...|..++..+.+.|++++|..+|++... |
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~-~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPID-KARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHH-HHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHH-HHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 44444433 235668888887 47789999 999999999885 355677899999999999999999999998765 6
Q ss_pred ChhhHHHHHHHH-HcCCChHHHHH----HhccCC-----C-CChhhHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 047840 96 DVVTWTTMVDGY-GKMGDFENARE----LFEKMP-----E-RNAVSWSAIMAAYSR---------ISDFKEVLSLFRQMQ 155 (445)
Q Consensus 96 ~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 155 (445)
+...|...+... ...|+.++|.+ +|++.. . ++...|...+..... .|+++.|..+|++.+
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 666777776533 35677777665 665542 1 356677777776654 789999999999998
Q ss_pred HcCCCCCHHHHHHHHHHH-------------HccCChhHHHHHHHHHH------HcC---CCCc--------hhhhhHHH
Q 047840 156 EVGMKPNESGLVSVLTAC-------------AHLGAITQGLWVHSYAK------RYH---LEKN--------VILATAVV 205 (445)
Q Consensus 156 ~~~~~p~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~ 205 (445)
+....+....|....... ...+++..|..+++... +.. ++|+ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 731111123333322211 13456677777776632 111 2333 23444444
Q ss_pred HHHHcc----CCh----HHHHHHhhcCCC---CChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCC
Q 047840 206 DMYSKC----GHV----HSALSVFEGISN---KDAGAWNAMISGVAM-------NGDAK-------KSLELFDRMVKSGT 260 (445)
Q Consensus 206 ~~~~~~----g~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~ 260 (445)
...... ++. ..+..+|++... .++..|..++..+.+ .|+++ +|..+|++..+.-.
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~ 317 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL 317 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhC
Confidence 332221 232 366677776654 467788888888775 78887 89999999876312
Q ss_pred CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-h-hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 261 QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-L-EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 261 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
+.+...+..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+.. +.+...|
T Consensus 318 p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 318 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 335778888888899999999999999999963 554 2 478888888899999999999999998764 3344444
Q ss_pred HHHHHH-HHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 339 GALLSA-CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 339 ~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...+.. +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 333322 3468999999999999999999999999999999999999999999999998763
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.5e-17 Score=152.90 Aligned_cols=355 Identities=10% Similarity=-0.061 Sum_probs=227.4
Q ss_pred CcccHHHHHHHhhhcCCchhHHHHHHHHHHHh-----c--CCC-ChhhHHHHHHHHHhcCCHHHHHHHhccCCC------
Q 047840 29 NNYTFPPLIKACVILGPLENFGMFVHAHVVKF-----G--FGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPD------ 94 (445)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 94 (445)
....|+.+...+...|+++ .|...++...+. + ..| ...+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~-eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNE-AALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456888888888899999 888888877553 1 122 345788888899999999999888775421
Q ss_pred -----CChhhHHHHHHHHHc--CCChHHHHHHhccCCC--C-ChhhHHHHHHH---HHhcCCHhHHHHHHHHHHHcCCCC
Q 047840 95 -----RDVVTWTTMVDGYGK--MGDFENARELFEKMPE--R-NAVSWSAIMAA---YSRISDFKEVLSLFRQMQEVGMKP 161 (445)
Q Consensus 95 -----~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~p 161 (445)
....++..+..++.. .+++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++..+.+ +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 133456655555544 4568889998888763 4 44455544444 345677788888888887753 22
Q ss_pred CHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHH
Q 047840 162 NESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNA 234 (445)
Q Consensus 162 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 234 (445)
+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...|++..+ .+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 45555555544443 457788888888888775 55677788888889999999999988887653 34556666
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC
Q 047840 235 MISGVAMN-------------------GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG 295 (445)
Q Consensus 235 l~~~~~~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (445)
+...|... +..+.|...+++..... +.+..++..+...+...|++++|...|++....
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 55554321 23566777777776653 234556777778888888888888888888754
Q ss_pred CCCChhH----HHHHHH-HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 296 VEPQLEH----YACVVD-LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 296 ~~~~~~~----~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
.|+... +..+.. .....|++++|+..|.+.++.. |+...... ....+.+++++.++..|.++.
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHCC-CTT
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhCCCCHH
Confidence 333221 222222 2346788888888888877544 44322221 223455677778888999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHhcCCc
Q 047840 371 THVLSYNIYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
++..++.+|...|++++|.+.+++..+.+-.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998876543
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=4.4e-16 Score=154.64 Aligned_cols=345 Identities=11% Similarity=0.068 Sum_probs=269.2
Q ss_pred hhchhhcCCchHHHHHHHHHHhcC--CCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDMG--FEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLV 79 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (445)
+++|...|.+.+|++++++..-.+ +.-+...-+.++.+..+. +.. ....+.+... ......+...+...
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~-Rv~eyI~kLd-------~~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRT-RVMEYINRLD-------NYDAPDIANIAISN 1062 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-Chh-hHHHHHHHhh-------hccHHHHHHHHHhC
Confidence 567889999999999999998432 112234455566666555 334 4444443332 12244578888899
Q ss_pred CCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047840 80 HKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159 (445)
Q Consensus 80 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 159 (445)
|.+++|..+|++... .....+.++. ..|++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 999999999999752 2222233322 7789999999999774 4678889999999999999999999663
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHH
Q 047840 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGV 239 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 239 (445)
-|...|..++.+|.+.|++++|.+++...++.. +++...+.++.+|++.+++++...+. ..++...|..+...|
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 377888999999999999999999999988765 44444556999999999999655553 455667777899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
...|++++|..+|... ..|..+...+.+.|+++.|.+.+++.. +..+|..+..+|...|++..|
T Consensus 1206 e~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA 1269 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLA 1269 (1630)
T ss_pred HhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999999985 478899999999999999999998774 468899999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc--CChHHHHHHHH
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA--GWDMEANKVRK 393 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 393 (445)
......+ ..++..+..++..|.+.|.+++|+.+++..+.+++.+...|..++.+|.+- ++..++.++|.
T Consensus 1270 ~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1270 QMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8877654 456677889999999999999999999999999988888888888877774 45555555554
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=6.1e-18 Score=150.56 Aligned_cols=262 Identities=7% Similarity=0.019 Sum_probs=198.8
Q ss_pred hhHHHHHHHHHcCCChHHHHHHhccCCC---CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047840 98 VTWTTMVDGYGKMGDFENARELFEKMPE---RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACA 174 (445)
Q Consensus 98 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 174 (445)
..+..+...+...|++++|..+|+++.+ .+..++..+...+...|++++|.+.++++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4455666666677777777777766643 255667777778888888888888888877653 336677777788888
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHH--------------HH-HHHccCChHHHHHHhhcCCC---CChhhHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAV--------------VD-MYSKCGHVHSALSVFEGISN---KDAGAWNAMI 236 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 236 (445)
..|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+ .+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 8888888888888877664 2233333332 23 47778888999988887643 3667888889
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 316 (445)
..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..+..+|...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999988763 346778888999999999999999999998864 234577888999999999999
Q ss_pred HHHHHHHHHHhcCCCCC------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 317 EEAEKFIEEKMGGLGGG------------DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
++|...++++.+.. +. +..+|..+..++...|+.++|..++++.++..
T Consensus 257 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp HHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred HHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 99999999887654 22 57889999999999999999999988766543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=5.3e-17 Score=139.21 Aligned_cols=228 Identities=13% Similarity=-0.011 Sum_probs=135.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC--CchhhhhHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE--KNVILATAVVD 206 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 206 (445)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++++.+.... ++..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 456667777777777777777777777665 56677777777777777777777777776654210 0100
Q ss_pred HHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
....++..+...+...|++++|+..|++.... .|+. ..+...|++++|...
T Consensus 77 --------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 --------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 00233444455555555555555555555553 2232 123344556666666
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++++..|
T Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 6665542 12234455556666666666666666666665544 44556666666666666666666666666666666
Q ss_pred CCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 367 TDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 367 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.++.++..++.++...|++++|.+.+++..+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666666666666665543
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.6e-16 Score=136.11 Aligned_cols=186 Identities=11% Similarity=0.025 Sum_probs=141.2
Q ss_pred HHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHHHHHHHh
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGT--QPT----ETTFVAVLTTC 274 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~----~~~~~~l~~~~ 274 (445)
.+...+...|++++|...|++..+ .+..++..+...+...|++++|+..+++..+... .|+ ..++..+...+
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 333344444444444444432211 3344555566666666777777777776655321 122 57788889999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
...|++++|...++++... .|+. ..+...|++++|...++++.... +.+...+..+...+...|++++|
T Consensus 90 ~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999965 4553 45667788999999999998765 55678899999999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 355 NRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
...++++++..|.++.++..++.++...|++++|...+++..+..
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999998754
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.9e-16 Score=148.68 Aligned_cols=357 Identities=11% Similarity=0.008 Sum_probs=234.0
Q ss_pred chhhcCCchHHHHHHHHHHhc-----C--CCC-CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhc------CCC-Chhh
Q 047840 4 GYMQANFPKLSVFCYLDMLDM-----G--FEP-NNYTFPPLIKACVILGPLENFGMFVHAHVVKFG------FGE-DPFV 68 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~ 68 (445)
.+...|++++|++.|++..+. + ..| ...+|+.+..++...|+++ .|...++.+.+.. ..+ ...+
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~-~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS-DVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHhHhcccccchhhHHH
Confidence 456789999999999987542 1 123 3457888999999999999 9999988876632 111 2345
Q ss_pred HHHHHHHHHhc--CCHHHHHHHhccCCC--C-ChhhHHHHHHH---HHcCCChHHHHHHhccCCC--C-ChhhHHHHHHH
Q 047840 69 VSSLLEFYSLV--HKMGTARALFDKSPD--R-DVVTWTTMVDG---YGKMGDFENARELFEKMPE--R-NAVSWSAIMAA 137 (445)
Q Consensus 69 ~~~l~~~~~~~--g~~~~a~~~~~~~~~--~-~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 137 (445)
+.....++... +++++|+..|++..+ | ++..+..+..+ +...++.++|++.+++..+ | +..++..+...
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence 55555555544 579999999998654 3 45555555554 3456778888888877653 3 55566666555
Q ss_pred HHh----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc--
Q 047840 138 YSR----ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC-- 211 (445)
Q Consensus 138 ~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 211 (445)
+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. |.+..++..+..+|...
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHH
Confidence 444 467899999999988764 4467888999999999999999999999999875 44566777776665432
Q ss_pred -----------------CChHHHHHHhhcCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHH
Q 047840 212 -----------------GHVHSALSVFEGIS---NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTET--TFVA 269 (445)
Q Consensus 212 -----------------g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ 269 (445)
+.++.|...|++.. ..+..++..+...+...|++++|+..|++.......|... .+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 23566777776543 3466789999999999999999999999998865443322 2222
Q ss_pred HHH-HhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 270 VLT-TCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 270 l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
+.. .....|+.++|+..|++..+. .|+...... ....+.++++..+..+ +.++.+|..+..+|...
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~ 443 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELN 443 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 222 245789999999999998853 565433222 2234455666665555 67788999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 349 GKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
|++++|++.|+++++.+|.+|.+...++
T Consensus 444 g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 444 EKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHCC------------------------
T ss_pred CCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999999998776665544
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.74 E-value=1.4e-16 Score=132.62 Aligned_cols=196 Identities=15% Similarity=0.087 Sum_probs=149.8
Q ss_pred CCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 195 EKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 195 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
|++...+..+...+.+.|++++|...|++... .+...+..+...+.+.|++++|+..+++..+... .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 45566666777777777777777777776543 3556777777888888888888888888877632 3566777777
Q ss_pred HHhhcC-----------CcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHH
Q 047840 272 TTCTHA-----------KMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWG 339 (445)
Q Consensus 272 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 339 (445)
..+... |++++|...+++..+. .| +...+..+..++...|++++|+..|++.++.. .++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 778888 9999999999999865 44 47788889999999999999999999998877 7889999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
.+..++...|++++|+..|+++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999988654
No 37
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.1e-14 Score=144.74 Aligned_cols=334 Identities=11% Similarity=0.119 Sum_probs=186.8
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHH
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGT 84 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (445)
+...|.+++|..+|++... .....+.++. ..++++ .|.++.++. -+..+|..+..++...|++++
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nld-rAiE~Aerv------n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLD-RAYEFAERC------NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHH-HHHHHHHhc------CCHHHHHHHHHHHHhCCCHHH
Confidence 4455666666666665311 1111122221 445555 555555432 234556666666666666666
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 047840 85 ARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN 162 (445)
Q Consensus 85 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 162 (445)
|...|.+. .|...|..++.++.+.|++++|.+.|....+ +++...+.++.+|++.+++++..... . .|+
T Consensus 1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 66666553 4455566666666666666666666654432 22222334666666666665422221 1 234
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (445)
...+..+...|...|++++|..+|..+ ..|..+..+|++.|+++.|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhh
Confidence 445555666666666666666666653 25666666666666666666666655 3445666666666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHh--cCChHHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLAR--AGMVEEA 319 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~--~g~~~~A 319 (445)
|++..|...... +..+...+..++..|.+.|.+++|+.+++... ++.+ ....|+-|..+|++ -++..++
T Consensus 1264 ~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEh 1335 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREH 1335 (1630)
T ss_pred hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHH
Confidence 666666554432 22345556677777778888888888887666 3332 24455555555554 3445555
Q ss_pred HHHHHHHhcCCCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH------------hCCCCchhHHHHHHHHHH
Q 047840 320 EKFIEEKMGGLGGG------DANVWGALLSACRIYGKIEVGNRVWRKLAE------------MGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 320 ~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~~~~~ 381 (445)
.++|..-. +++| +...|..+...|.+.|+++.|....-+-.. ..+.++..|...+..|..
T Consensus 1336 lk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1336 LELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred HHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 55555332 3333 456688888888888888877722211111 134466666666666666
Q ss_pred cC
Q 047840 382 AG 383 (445)
Q Consensus 382 ~g 383 (445)
.+
T Consensus 1414 ~~ 1415 (1630)
T 1xi4_A 1414 FK 1415 (1630)
T ss_pred hC
Confidence 55
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=161.08 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=121.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMV---KSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYAC 305 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 305 (445)
..+|+++|.+|++.|+.++|.++|.+|. ..|+.||..|||++|.+|++.|++++|.++|++|... |+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 3489999999999999999999998876 4589999999999999999999999999999999988 99999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CchhHHHH
Q 047840 306 VVDLLARAGMV-EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---------DFSTHVLS 375 (445)
Q Consensus 306 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l 375 (445)
+|+++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.+.+..|. ...+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-------~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-------TVLKAVHKVKPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-------HHHHHHGGGCCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-------HHHHHHHHhCcccCCCCCCcccccchHHH
Confidence 99999999985 78999999999999999999999998765542 333444333332 12233456
Q ss_pred HHHHHHcC
Q 047840 376 YNIYKEAG 383 (445)
Q Consensus 376 ~~~~~~~g 383 (445)
-+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66777655
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=3.4e-16 Score=145.38 Aligned_cols=374 Identities=9% Similarity=-0.017 Sum_probs=251.3
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCc---hhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcC
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPL---ENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVH 80 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (445)
.+.+.|++++|+.+|++..+.| +...+..+...+...|+. + .|..+++...+. ++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~-~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIK-QAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHHTC-
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHH-HHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 4577899999999999998876 344455555566667777 7 899999888764 4555666666555554
Q ss_pred -----CHHHHHHHhccCCCC-ChhhHHHHHHHHHcCCChHH---HHHHhccCCC-CChhhHHHHHHHHHhcCCHhHHHHH
Q 047840 81 -----KMGTARALFDKSPDR-DVVTWTTMVDGYGKMGDFEN---ARELFEKMPE-RNAVSWSAIMAAYSRISDFKEVLSL 150 (445)
Q Consensus 81 -----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 150 (445)
++++|...|++..++ +...+..|...|...+..++ +.+.+..... .++..+..+...|...+.++++...
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 788999999887654 55678888888877665433 3444443332 3667788888899988877666665
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc----CChHHHHHHhhc
Q 047840 151 FRQMQEVGMKPNESGLVSVLTACAHLG---AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC----GHVHSALSVFEG 223 (445)
Q Consensus 151 ~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~ 223 (445)
...+...-...++..+..+...|...| +.++|...|++..+.| +++...+..|..+|... +++++|..+|++
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 444433222334448888888898899 9999999999999988 55555556677777665 799999999998
Q ss_pred CCCCChhhHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC-----cHHHHHHHHHHhHHhhC
Q 047840 224 ISNKDAGAWNAMISG-V--AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK-----MVRDGLNLFENMSAVYG 295 (445)
Q Consensus 224 ~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~ 295 (445)
....++.++..+... + ...+++++|+.+|++..+.| +...+..+...|. .| ++++|..+|++..
T Consensus 243 aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---- 314 (452)
T 3e4b_A 243 IAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---- 314 (452)
T ss_dssp HGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----
T ss_pred HcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----
Confidence 774467788888877 4 56899999999999998876 5666666666666 44 9999999999887
Q ss_pred CCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 047840 296 VEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 296 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
+-+...+..|...|.. ..++++|..+|++..+.| .+ .....|...|.. ..+.++|...|+++.+.+++
T Consensus 315 -~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-QN--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp -TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-CT--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred -CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-hH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 2356677777777766 349999999999998877 33 345566666654 35899999999999998875
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
........+......++..+|..+.++-.+.
T Consensus 391 ~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 391 EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4333333332233345667777777766543
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=161.12 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=123.4
Q ss_pred hhhHHHHHHHHHcCCChHHHHHHhccCC-------CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047840 97 VVTWTTMVDGYGKMGDFENARELFEKMP-------ERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSV 169 (445)
Q Consensus 97 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 169 (445)
..+|++||++|++.|++++|.++|++|. .||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3489999999999999999999997753 589999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-hHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcC
Q 047840 170 LTACAHLGAI-TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNG 243 (445)
Q Consensus 170 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 243 (445)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++...++...+..+ .+.+...+.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 789999999999999999999999998877765555555554444332 1334444555666544
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=1e-15 Score=132.55 Aligned_cols=244 Identities=9% Similarity=-0.025 Sum_probs=179.8
Q ss_pred hcCCHhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHH
Q 047840 140 RISDFKEVLSLFRQMQEVGMK---PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHS 216 (445)
Q Consensus 140 ~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 216 (445)
..|++++|++.|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 446777888888877764211 135566777777778888888888888877765 4466777778888888888888
Q ss_pred HHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 217 ALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 217 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
|...|+++.. .+..++..+...|...|++++|...|+++.+.. |+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888876643 356788888889999999999999999988853 44444444445556679999999999888764
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 294 YGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGG---GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
.+++...+ .++..+...++.++|...+.+....... .+..++..+...+...|++++|...|+++++..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23444444 4677777888889999999998755311 12578889999999999999999999999999987654
Q ss_pred hHHHHHHHHHHcCChHHHHHHH
Q 047840 371 THVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 371 ~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 66788889999988766
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=1.7e-15 Score=131.01 Aligned_cols=248 Identities=8% Similarity=-0.015 Sum_probs=137.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc--hhhhhHHHHHH
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN--VILATAVVDMY 208 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 208 (445)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+.+..++ ...+..+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455555566666666665555532 11333455555555555666666655555555221111 11244555555
Q ss_pred HccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLN 285 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 285 (445)
...|++++|...|++..+ .+..++..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|..
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554432 244455566666666666666666666655441 2234444444412223347777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCC-CCCC------HHHHHHHHHHHHHcCChHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGL-GGGD------ANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~ 355 (445)
.++.+.+. .+.+...+..+..++...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777653 12235555566666666666 666777776654431 1122 256777888888888888888
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHc
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+.++++++..|+++.+...+.......
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 888888888888887777666554443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.69 E-value=1.1e-14 Score=124.22 Aligned_cols=209 Identities=10% Similarity=0.014 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHH
Q 047840 128 AVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDM 207 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (445)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 3445555556666666666666666655532 2244455555555555555555555555554442 11
Q ss_pred HHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
+...+..+...+...|++++|++.++++...+..| +...+..+...+...|++++|...
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344445555556666666666666655522233 344555666666777777777777
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+..|
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 7777653 12345666777777777777777777777776655 45666777777777777888888888888777777
Q ss_pred CCchhH
Q 047840 367 TDFSTH 372 (445)
Q Consensus 367 ~~~~~~ 372 (445)
.++...
T Consensus 241 ~~~~~~ 246 (252)
T 2ho1_A 241 GSLEYQ 246 (252)
T ss_dssp TSHHHH
T ss_pred CCHHHH
Confidence 765443
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=1.2e-15 Score=129.46 Aligned_cols=214 Identities=13% Similarity=0.087 Sum_probs=119.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMY 208 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (445)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------
Confidence 344444455555555555555555554422 2234444444444444444444444444444332
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
..+..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++
T Consensus 88 -----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 149 (243)
T 2q7f_A 88 -----------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQ 149 (243)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred -----------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1133445555566666667777777777666653 2355566666677777777777777777
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..|++
T Consensus 150 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 150 RAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 77653 23345666677777777777777777777776654 4566777777777777777888888888777777777
Q ss_pred chhHHHHHHHH
Q 047840 369 FSTHVLSYNIY 379 (445)
Q Consensus 369 ~~~~~~l~~~~ 379 (445)
+.++..+....
T Consensus 227 ~~~~~~~~~l~ 237 (243)
T 2q7f_A 227 MLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHH
Confidence 66666554443
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.68 E-value=4.8e-15 Score=133.48 Aligned_cols=249 Identities=10% Similarity=0.002 Sum_probs=197.9
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCchhhhhHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA-ITQGLWVHSYAKRYHLEKNVILATAVV 205 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 205 (445)
+...|+.+...+.+.|++++|++.|++.+..+ +-+...|..+..++...|+ +++|+..++++++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34567778888888888999999988888753 2257778888888888886 899999888888876 55777888888
Q ss_pred HHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-CCcHH
Q 047840 206 DMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH-AKMVR 281 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~ 281 (445)
.++...|++++|+..|+++.. .+..+|..+..++...|++++|+..|+++.+.... +...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888888898888888887654 46778888888999999999999999999887433 67788888888887 56556
Q ss_pred HH-----HHHHHHhHHhhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-----
Q 047840 282 DG-----LNLFENMSAVYGVEPQLEHYACVVDLLARAG--MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG----- 349 (445)
Q Consensus 282 ~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 349 (445)
+| +..+++.... -+-+...|..+..++...| ++++|.+.+.++ +.. +.+...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 66 4778888764 1334678888888888887 689999999888 444 667888999999998864
Q ss_pred ---C-hHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHc
Q 047840 350 ---K-IEVGNRVWRKL-AEMGITDFSTHVLSYNIYKEA 382 (445)
Q Consensus 350 ---~-~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 382 (445)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999888888877766543
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.68 E-value=1.2e-14 Score=125.63 Aligned_cols=232 Identities=7% Similarity=-0.062 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChh----hHHHHH
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAG----AWNAMI 236 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~ 236 (445)
...+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|...|++... ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445667788899999999999999999875 45666888899999999999999999987654 2322 488899
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV 316 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 316 (445)
..+...|++++|+..|++..+... .+...+..+...+...|++++|...+++..+. .+.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988643 35678889999999999999999999999853 234566777777344456699
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhC---CCC-----chhHHHHHHHHHHcCCh
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMG---ITD-----FSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~ 385 (445)
++|.+.|+++.+.. +.+...+..+..++...|+ .++|...++++++.. |+. ..++..++..|...|++
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999998776 5668888889999999998 888999999999865 331 25788899999999999
Q ss_pred HHHHHHHHHHHhcC
Q 047840 386 MEANKVRKLISETG 399 (445)
Q Consensus 386 ~~A~~~~~~m~~~~ 399 (445)
++|.+.+++..+..
T Consensus 238 ~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 238 VKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988653
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=7e-14 Score=120.92 Aligned_cols=225 Identities=11% Similarity=0.044 Sum_probs=139.2
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCchhhhh
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAH----LGAITQGLWVHSYAKRYHLEKNVILAT 202 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 202 (445)
++.++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4456666677777777777777777777662 244566666667776 777777777777777664 455556
Q ss_pred HHHHHHHc----cCChHHHHHHhhcCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 203 AVVDMYSK----CGHVHSALSVFEGISN-KDAGAWNAMISGVAM----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 203 ~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
.+...|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666654433 244555566666666 666666666666666643 34444455555
Q ss_pred hhc----CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 274 CTH----AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 274 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
|.. .+++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+...|
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 554 66666666666666543 234455556666666 666666666666665543 145555566666
Q ss_pred HH----cCChHHHHHHHHHHHHhCCC
Q 047840 346 RI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 346 ~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
.. .+++++|.+.|+++.+.+|+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 65 66666666666666666654
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=3e-15 Score=124.57 Aligned_cols=209 Identities=11% Similarity=0.038 Sum_probs=125.6
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD 206 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 206 (445)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++++.+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45566677777777777777777777776643 2356667777777777777777777777777664 344555555555
Q ss_pred HHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHH
Q 047840 207 MYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNL 286 (445)
Q Consensus 207 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 286 (445)
++...+.. . .. .+...|++++|+..|++..+... -+...+..+...+...|++++|...
T Consensus 82 ~~~~~~~~---------~--~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 82 AYVALYRQ---------A--ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHT---------C--SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhh---------h--hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHH
Confidence 55544100 0 00 01122677777777777766532 2455666666677777777777777
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 287 FENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
|+++.+. . .+...+..+..+|...|++++|...|++.++.. +.+...+..+...+...|++++|...+++..
T Consensus 141 ~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 141 LKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777765 3 566667777777777777777777777776655 5566677777777777777777777776553
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=8.5e-14 Score=120.40 Aligned_cols=224 Identities=8% Similarity=-0.027 Sum_probs=197.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc----cCChHHHHHHhhcCCC-CChhhHHHHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSK----CGHVHSALSVFEGISN-KDAGAWNAMI 236 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~ 236 (445)
++.++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+ .++.++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56778888899999999999999999999843 55778889999999 9999999999987654 4777889999
Q ss_pred HHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 237 SGVAM----NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH----AKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 237 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999998875 67788888888888 99999999999999875 3 5667788888
Q ss_pred HHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 309 LLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 309 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
.|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...++++.+.+| +..+..++.+|.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~ 229 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY 229 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence 8888 999999999999998764 56788889999999 9999999999999999876 667889999999
Q ss_pred H----cCChHHHHHHHHHHHhcCC
Q 047840 381 E----AGWDMEANKVRKLISETGM 400 (445)
Q Consensus 381 ~----~g~~~~A~~~~~~m~~~~~ 400 (445)
. .+++++|.+.+++..+.|.
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cCCCcccCHHHHHHHHHHHHHcCC
Confidence 9 9999999999999987764
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=3.1e-14 Score=119.05 Aligned_cols=135 Identities=10% Similarity=-0.015 Sum_probs=60.9
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 233 NAMISGVAMN-GDAKKSLELFDRMVKSGTQPT-ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 233 ~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
..+...+... |++++|+..++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..++
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHH
Confidence 3334444444 444444444444444211121 233444444444555555555555544432 112244444444555
Q ss_pred HhcCChHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
...|++++|...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+..|+++.
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 55555555555555544433 2 34444444444445555555555555555555554443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=2.5e-14 Score=119.67 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=162.7
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
+..++..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.... +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455555566666666666666654432 245567778888888899999999999888763 3367788889999
Q ss_pred hhcC-CcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh
Q 047840 274 CTHA-KMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 274 ~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
+... |++++|...++.+... +..|+ ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 9999 9999999999999862 33443 6778888999999999999999999998766 56788999999999999999
Q ss_pred HHHHHHHHHHHHhCC-CCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 352 EVGNRVWRKLAEMGI-TDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 352 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++|...++++.+..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88888989999999999999999999998754
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=1.2e-14 Score=134.86 Aligned_cols=345 Identities=13% Similarity=0.067 Sum_probs=237.4
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH---HHHHHHhccCCCCChhhHHHHHHHHHcCC
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM---GTARALFDKSPDRDVVTWTTMVDGYGKMG 111 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 111 (445)
.+...+.+.|+++ .|..+++...+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~-~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTV-TAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 3556677889999 9999999998876 334455666777778888 99999999988777778888888666655
Q ss_pred -----ChHHHHHHhccCCCC-ChhhHHHHHHHHHhcCCHhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHH
Q 047840 112 -----DFENARELFEKMPER-NAVSWSAIMAAYSRISDFKE---VLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQG 182 (445)
Q Consensus 112 -----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 182 (445)
++++|...|++..++ +...+..|...|...+..++ +.+.+......| +......+...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccC
Confidence 788999999988764 55678888888887765444 455555555444 455667778888888866665
Q ss_pred HHHHHHHHHcCCCCchhhhhHHHHHHHccC---ChHHHHHHhhcCCCC---ChhhHHHHHHHHHhc----CChHHHHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILATAVVDMYSKCG---HVHSALSVFEGISNK---DAGAWNAMISGVAMN----GDAKKSLELF 252 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~~ 252 (445)
......+.+.-...++..+..|..+|...| +.++|...|++..+. +...+..+...|... +++++|+.+|
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 555444433323345558888999999999 999999999876543 333446677777654 7999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-h--hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHH
Q 047840 253 DRMVKSGTQPTETTFVAVLTT-C--THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG-----MVEEAEKFIE 324 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 324 (445)
++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|...|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987 43 34445555554 3 4589999999999999864 3 6677777887777 55 9999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH----cCChHHHHHHHHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE----AGWDMEANKVRKLIS 396 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 396 (445)
+.. +-++..+..|...|.. ..+.++|...|+++.+.+ ++.....++.+|.. ..+..+|...++...
T Consensus 312 ~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 312 KAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 986 4577788888887776 338999999999998765 45678889988875 468999999999998
Q ss_pred hcCCc
Q 047840 397 ETGMK 401 (445)
Q Consensus 397 ~~~~~ 401 (445)
+.|..
T Consensus 386 ~~g~~ 390 (452)
T 3e4b_A 386 AQDTP 390 (452)
T ss_dssp TTCCH
T ss_pred HCCCH
Confidence 87763
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=6.3e-15 Score=125.02 Aligned_cols=199 Identities=10% Similarity=0.064 Sum_probs=157.0
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566666677777777777777776543 356678888888999999999999999988864 3467888889999
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999875 24567788899999999999999999999988766 5678899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
|...++++.+..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987753
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.65 E-value=2.2e-14 Score=122.50 Aligned_cols=199 Identities=10% Similarity=-0.024 Sum_probs=164.9
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
...+..+...+...|++++|...|+++.. .+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455555566666666666666655432 355677778888888999999999999988764 33677888899999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
...|++++|..+++++... +..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999862 3455 46677888999999999999999999988766 5678899999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 354 GNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
|...++++.+..|.+...+..++.++...|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999997653
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=7.4e-15 Score=134.74 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=44.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCCC--C-C----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCC-CHHHH
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMPE--R-N----AVSWSAIMAAYSRISDFKEVLSLFRQMQEV----GMKP-NESGL 166 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~ 166 (445)
.+......+...|++++|...|++..+ | + ..+|..+...+...|++++|...+++.... +..| ...++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344444555555555555555555432 2 1 234445555555555555555555554321 1111 12344
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH
Q 047840 167 VSVLTACAHLGAITQGLWVHSYAKR 191 (445)
Q Consensus 167 ~~l~~~~~~~~~~~~a~~~~~~~~~ 191 (445)
..+...+...|++++|...++++.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~ 115 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLD 115 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555443
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=1.2e-14 Score=130.82 Aligned_cols=238 Identities=10% Similarity=0.035 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC-hHHHHHHhhcCCC---CChhhHHHHHHH
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH-VHSALSVFEGISN---KDAGAWNAMISG 238 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 238 (445)
...|..+...+...|++++|+..++++++.. +-+..+|+.+..++...|+ +++|+..|+++.. .+..+|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888899999999999999999986 5678899999999999997 9999999998764 467799999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR-AGMVE 317 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 317 (445)
+...|++++|+..|+++.+... -+...|..+..++...|++++|+..++++.+. -+-+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998743 37888999999999999999999999999975 23457889999999998 66658
Q ss_pred HH-----HHHHHHHhcCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC-------
Q 047840 318 EA-----EKFIEEKMGGLGGGDANVWGALLSACRIYG--KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG------- 383 (445)
Q Consensus 318 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 383 (445)
+| +..+++.+... +.+...|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 88 58888888766 667889999999998888 689999999998 888999999999999999975
Q ss_pred --ChHHHHHHHHHH-HhcCCccCCcccE
Q 047840 384 --WDMEANKVRKLI-SETGMKKKPGCSV 408 (445)
Q Consensus 384 --~~~~A~~~~~~m-~~~~~~~~~~~~~ 408 (445)
..++|.++++++ .+ +.|.....|
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w 356 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYW 356 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHH
Confidence 258999999988 44 344333344
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=6.3e-15 Score=135.58 Aligned_cols=265 Identities=10% Similarity=0.014 Sum_probs=171.1
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHHc----C-CCCchhhhhH
Q 047840 133 AIMAAYSRISDFKEVLSLFRQMQEVGMKPNE----SGLVSVLTACAHLGAITQGLWVHSYAKRY----H-LEKNVILATA 203 (445)
Q Consensus 133 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 203 (445)
.+...+...|++++|+..|++..+.+.. +. ..+..+...+...|++++|...++++.+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3445556666666666666666553211 22 34555555666666666666666555432 1 1122345555
Q ss_pred HHHHHHccCChHHHHHHhhcCCCC---------ChhhHHHHHHHHHhcCC-----------------hHHHHHHHHHHHH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISNK---------DAGAWNAMISGVAMNGD-----------------AKKSLELFDRMVK 257 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 257 (445)
+...|...|++++|...|++.... ...++..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666544321 23356666677777777 7777777776543
Q ss_pred c----CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 047840 258 S----GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMG 328 (445)
Q Consensus 258 ~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 328 (445)
. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 2346677777788889999998888887754211112 23677788888899999999998887754
Q ss_pred CCC--C---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 329 GLG--G---GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 329 ~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
... . ....++..+...+...|++++|...++++++..+. ...++..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 320 0 12467788888899999999999999998875432 244777889999999999999998888765
Q ss_pred c
Q 047840 398 T 398 (445)
Q Consensus 398 ~ 398 (445)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.3e-14 Score=125.47 Aligned_cols=239 Identities=7% Similarity=-0.094 Sum_probs=171.7
Q ss_pred cCCChHHHHHHhccCCCC-------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhH
Q 047840 109 KMGDFENARELFEKMPER-------NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQ 181 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 181 (445)
..|++++|+..|+++.+. +..+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346667777777665541 35567778888888888888888888887753 3367788888888888888888
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+ |+.......+..+...|++++|...+++.....
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 888888888764 44677788888888888888888888887653 333333444445567789999999998877753
Q ss_pred CCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 047840 260 TQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD 334 (445)
Q Consensus 260 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 334 (445)
+++...+ .++..+...++.++|...++..... .|+ ...+..+...|...|++++|...|++..+.. +.+
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHN 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTT
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chh
Confidence 3344444 3666677778888999988887642 332 5678888999999999999999999998765 334
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHH
Q 047840 335 ANVWGALLSACRIYGKIEVGNRVW 358 (445)
Q Consensus 335 ~~~~~~l~~~~~~~g~~~~a~~~~ 358 (445)
... ...++...|++++|++.+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 333 355677778888887766
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.63 E-value=8.2e-14 Score=112.69 Aligned_cols=167 Identities=12% Similarity=0.052 Sum_probs=144.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
++..|..+...|...|++++|++.|++..+... -+...+..+...+.+.|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 456788888899999999999999999888643 36778888888899999999999999998864 234566777778
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
..+...++++.|...+.+..... +.+...+..+...+...|++++|++.|+++++..|.++.++..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999999887766 66788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 047840 388 ANKVRKLISET 398 (445)
Q Consensus 388 A~~~~~~m~~~ 398 (445)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=8.4e-15 Score=130.50 Aligned_cols=267 Identities=13% Similarity=0.056 Sum_probs=185.9
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHc----CCC-Cchhhh
Q 047840 131 WSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN----ESGLVSVLTACAHLGAITQGLWVHSYAKRY----HLE-KNVILA 201 (445)
Q Consensus 131 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 201 (445)
+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++++.+. +.+ ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 33445566677777777777777766421 12 245566666777777777777777665432 111 124556
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCC-----CC----hhhHHHHHHHHHhcCC--------------------hHHHHHHH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISN-----KD----AGAWNAMISGVAMNGD--------------------AKKSLELF 252 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 252 (445)
..+...+...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6677777777777777777765432 11 2366677777888888 88888888
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 047840 253 DRMVKS----GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFI 323 (445)
Q Consensus 253 ~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 323 (445)
++.... +..| ....+..+...+...|++++|...+++......-.++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776432 1111 2346777778888999999999999888754211122 236778888999999999999999
Q ss_pred HHHhcCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHH
Q 047840 324 EEKMGGLG-GGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVR 392 (445)
Q Consensus 324 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 392 (445)
++..+... .++ ..++..+...+...|++++|...++++++..+. ...++..++.+|.+.|++++|...+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 98754310 111 567888899999999999999999999885443 2447778999999999999999999
Q ss_pred HHHHhc
Q 047840 393 KLISET 398 (445)
Q Consensus 393 ~~m~~~ 398 (445)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=8.5e-15 Score=134.34 Aligned_cols=296 Identities=8% Similarity=0.054 Sum_probs=205.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHhccCCC--C-C----hhhHHHHHHHHHcCCChHHHHHHhccCCC-----C----
Q 047840 63 GEDPFVVSSLLEFYSLVHKMGTARALFDKSPD--R-D----VVTWTTMVDGYGKMGDFENARELFEKMPE-----R---- 126 (445)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---- 126 (445)
.+....+......+...|++++|...|++... | + ...+..+...+...|++++|...|++... .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555667788889999999999999987653 3 2 35688888999999999999999887642 1
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCC--------------------hhH
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KPN----ESGLVSVLTACAHLGA--------------------ITQ 181 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~ 181 (445)
...++..+...+...|++++|...+++...... .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 255688888999999999999999998865311 112 3366777777888888 666
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK--DAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
|...+++..+. +.....+ ...++..+...+...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666555432 1111100 12245556666677777777777777665421
Q ss_pred C-CCC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 260 T-QPT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 260 ~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
. .++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 236667777788888888888888877653211111 4567778888899999999999988875431
Q ss_pred C-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCchhHHHHHHHHHHcCChH
Q 047840 331 G-GGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI------TDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 331 ~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 386 (445)
. .++ ..++..+...+...|++++|.+.++++.+..+ ....++..++.++...|+..
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 0 112 56788888999999999999999999888532 23556777888888888763
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.59 E-value=2.3e-14 Score=133.90 Aligned_cols=193 Identities=6% Similarity=-0.067 Sum_probs=157.3
Q ss_pred chhhhhHHHHHHHccCCh-HHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHV-HSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
+...+..+..++...|++ ++|...|++..+ .+..+|..+...|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 445555555566666666 666666655432 24567777888888888999999999888875 466788888888
Q ss_pred HhhcC---------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHHHhcCCCC---
Q 047840 273 TCTHA---------KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA--------GMVEEAEKFIEEKMGGLGG--- 332 (445)
Q Consensus 273 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--- 332 (445)
.+... |++++|...++++.+. .+.+...|..+..+|... |++++|...|++..+.. +
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcc
Confidence 89888 9999999999999875 234577888899999888 99999999999998765 4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.+...|..+..+|...|++++|.+.|+++++..|.++.++..++.++...|++++|.+.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58899999999999999999999999999999999999999999999999999999875443
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=3.1e-12 Score=112.60 Aligned_cols=221 Identities=13% Similarity=0.094 Sum_probs=166.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCCh-------hHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAH-------LGAI-------TQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
++|..+|++..... +-+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887642 3366677777766653 4775 7888888888873224456678888888888
Q ss_pred cCChHHHHHHhhcCCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhcCCcHHHHHH
Q 047840 211 CGHVHSALSVFEGISN--K-DAG-AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTHAKMVRDGLN 285 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~ 285 (445)
.|++++|..+|++..+ | +.. +|..++..+.+.|++++|..+|++..+.+. ++...|...... +...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887654 2 343 788888888889999999999999887642 344444433333 223689999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 286 LFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL-GGG--DANVWGALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
+|+...+.. +.+...|..++..+.+.|++++|..+|++.+... ++| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988752 3457788888888999999999999999988762 344 46788888988889999999999999999
Q ss_pred HhCCCCc
Q 047840 363 EMGITDF 369 (445)
Q Consensus 363 ~~~~~~~ 369 (445)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 9888744
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=3.9e-14 Score=130.32 Aligned_cols=238 Identities=9% Similarity=0.033 Sum_probs=148.6
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc----C-CCCchh
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEV----GM-KPNESGLVSVLTACAHLGAITQGLWVHSYAKRY----H-LEKNVI 199 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 199 (445)
.|..+...|...|++++|+..+++..+. +. +.....+..+...+...|++++|...++++.+. + .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444555555555555555555544331 10 112234444555555555555555555554432 1 011233
Q ss_pred hhhHHHHHHHccCC-----------------hHHHHHHhhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHH
Q 047840 200 LATAVVDMYSKCGH-----------------VHSALSVFEGISN-----K----DAGAWNAMISGVAMNGDAKKSLELFD 253 (445)
Q Consensus 200 ~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~ 253 (445)
++..+...|...|+ +++|...+++... . ...++..+...+...|++++|+..++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45555555555566 5555555544321 1 23366777788888888888888888
Q ss_pred HHHHcCC-CCC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 254 RMVKSGT-QPT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP----QLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 254 ~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
+..+... .++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7765311 011 23677788889999999999999988775421111 14567788889999999999999999
Q ss_pred HHhcCC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 325 EKMGGL----G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 325 ~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+..+.. . .....++..+...|...|++++|.+.++++.+..+.
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 876431 0 112457888899999999999999999999987653
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.54 E-value=3.2e-13 Score=109.20 Aligned_cols=169 Identities=10% Similarity=0.068 Sum_probs=129.9
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
+..+|..+..+|.+.|++++|...|++..+ .+..++..+..+|.+.|++++|+..+.+...... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 344555566666666666666666655432 3555677777778888888888888888877633 356667777777
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
+...++++.+...+...... .+.+...+..+..+|.+.|++++|++.|++.++.. +.+..+|..+..++...|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999888864 24457778888899999999999999999988776 6778899999999999999999
Q ss_pred HHHHHHHHHHhCCCCc
Q 047840 354 GNRVWRKLAEMGITDF 369 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~ 369 (445)
|++.|+++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999888653
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=3.9e-14 Score=124.83 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=134.3
Q ss_pred ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc------C
Q 047840 127 NAVSWSAIMAAYSRISDFKEVLSLFRQMQEV-------GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY------H 193 (445)
Q Consensus 127 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 193 (445)
+..++..+...+...|++++|...++++.+. ..+.....+..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556777888888888888888888887662 12224456677777777888888888877777654 1
Q ss_pred C-CCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHH
Q 047840 194 L-EKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS------GTQP-TET 265 (445)
Q Consensus 194 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~ 265 (445)
. +....++..+...|.. .|++++|...+++..+. +..| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~-------------------------------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGK-------------------------------RGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHT-------------------------------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChHHHHHHHHHHHHHHH-------------------------------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 1 1123344444444444 44555555544444332 1112 233
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhh-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC-------CC
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVY-----G-VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL-------GG 332 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~ 332 (445)
.+..+...+...|++++|..+++++.... + .+....++..+..+|...|++++|...++++.+.. ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 45555666666677777776666665421 0 11123455666667777777777777776665320 01
Q ss_pred C-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 333 G-------DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 333 ~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+ ....+..+...+...+.+.++...++......|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 1122333334444556666677777777777777777788888888888888888888877654
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1.8e-13 Score=121.81 Aligned_cols=138 Identities=8% Similarity=0.038 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----h
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQ-PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----L 300 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 300 (445)
.++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 35666777777888888888888776543 111 11236677777888889999999988887653211122 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCC----C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGL----G-GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.++..+...|...|++++|...+++..+.. . .....++..+...+...|++++|...++++.+..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 566778888999999999999998875431 0 111457788889999999999999999999886553
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=2.6e-13 Score=123.52 Aligned_cols=228 Identities=8% Similarity=-0.038 Sum_probs=136.7
Q ss_pred HHHHHccCChhHHHHHHHHHHHc----CCCC-chhhhhHHHHHHHccCChHHHHHHhhcCCC-----C-----ChhhHHH
Q 047840 170 LTACAHLGAITQGLWVHSYAKRY----HLEK-NVILATAVVDMYSKCGHVHSALSVFEGISN-----K-----DAGAWNA 234 (445)
Q Consensus 170 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~-----~~~~~~~ 234 (445)
...+...|++++|...++++.+. +.++ ...++..+..+|...|+++.|...+.+..+ + ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33444555555555555555432 1111 223455555555555555555555544321 1 1235666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh---CC-CCChhHHHH
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGT-QPT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVY---GV-EPQLEHYAC 305 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~ 305 (445)
+...|...|++++|+..+++..+... .++ ..++..+...|...|++++|...+++..... +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 67777777777777777776654210 011 2356677777888888888888887776521 11 223556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGG----LGGGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+..+|...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. ...|....++..++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 778888888888888888776543 111122335566677777777 66676666665 2222344567778888
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 047840 379 YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~ 398 (445)
|...|++++|.+.+++..+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 88888888888888887654
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.51 E-value=6.3e-12 Score=110.60 Aligned_cols=214 Identities=10% Similarity=0.018 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHcCCCCchhhhhHHHHHHH-------ccCCh-------HHHHHHhhcCCC---C-ChhhHHHHHHHHHh
Q 047840 180 TQGLWVHSYAKRYHLEKNVILATAVVDMYS-------KCGHV-------HSALSVFEGISN---K-DAGAWNAMISGVAM 241 (445)
Q Consensus 180 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 241 (445)
++|...|+++.... +.++..|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999998864 667788888887775 35886 899999987654 2 55689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH-hcCChHH
Q 047840 242 NGDAKKSLELFDRMVKSGTQPT-ET-TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA-RAGMVEE 318 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 318 (445)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999885 454 33 7888888899999999999999999853 2334455544433322 3799999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC-CchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM---GIT-DFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
|..+|++.++.. +.+...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988765 567899999999999999999999999999995 443 566888899999999999999999999
Q ss_pred HHhcC
Q 047840 395 ISETG 399 (445)
Q Consensus 395 m~~~~ 399 (445)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87654
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=8.5e-14 Score=122.65 Aligned_cols=240 Identities=12% Similarity=0.083 Sum_probs=150.0
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCC--------C---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------C
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPE--------R---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEV------G 158 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 158 (445)
+..++..+...+...|++++|..+|+++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999998764 1 3456888899999999999999999998763 2
Q ss_pred CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHc------CCCC-chhhhhHHHHHHHccCChHHHHHHhhcCCCCChh
Q 047840 159 MKP-NESGLVSVLTACAHLGAITQGLWVHSYAKRY------HLEK-NVILATAVVDMYSKCGHVHSALSVFEGISNKDAG 230 (445)
Q Consensus 159 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 230 (445)
-.| ....+..+...+...|++++|...++++.+. +..| ...++..+...+...|
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~------------------ 167 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG------------------ 167 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC------------------
Confidence 222 4567888999999999999999999998764 1111 2233444444444444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh------CCC
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKS------GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVY------GVE 297 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~ 297 (445)
++++|+++++++.+. +..| ...++..+...+...|++++|...++++.... ...
T Consensus 168 -------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 168 -------------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -------------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 445555444444332 1112 22345555555666666666666666655320 011
Q ss_pred CC-------hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 298 PQ-------LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 298 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
+. ...+..+...+...+.+.+|...+....... +.+..++..+..+|...|++++|.+.++++++..|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1112222333445566666777777765443 445678889999999999999999999999887664
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.49 E-value=2e-12 Score=104.32 Aligned_cols=163 Identities=13% Similarity=0.023 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 3344445555555555555555544331 224455555555566666666666666666543 1234555666666677
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV 391 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 391 (445)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777666554 456667777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhc
Q 047840 392 RKLISET 398 (445)
Q Consensus 392 ~~~m~~~ 398 (445)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 7776543
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.49 E-value=1.4e-12 Score=126.83 Aligned_cols=165 Identities=10% Similarity=0.053 Sum_probs=141.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACV 306 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 306 (445)
+..+++.+...|.+.|++++|++.|++..+... -+...+..+..+|.+.|++++|+..|++..+. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 355788888888899999999999998887632 25678888888899999999999999998864 44 47788889
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChH
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDM 386 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 386 (445)
..+|...|++++|++.|++.++.. +.+...|..+..++...|++++|++.|+++++..|+++.++..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999988776 5678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047840 387 EANKVRKLISE 397 (445)
Q Consensus 387 ~A~~~~~~m~~ 397 (445)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877754
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.49 E-value=4.2e-11 Score=108.47 Aligned_cols=264 Identities=10% Similarity=0.002 Sum_probs=164.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCc----hhhhhHH
Q 047840 134 IMAAYSRISDFKEVLSLFRQMQEVGMKPNES----GLVSVLTACAHLGAITQGLWVHSYAKRYHL-EKN----VILATAV 204 (445)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l 204 (445)
....+...|++++|...+++........+.. .+..+...+...|++++|...+++...... .++ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445556777777777777766543111221 344555666667777777777766654310 011 1234556
Q ss_pred HHHHHccCChHHHHHHhhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--CHHHHHH
Q 047840 205 VDMYSKCGHVHSALSVFEGISN-------K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ--P--TETTFVA 269 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~~~~~ 269 (445)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6667777777777777765432 1 1224555667778888888888888877654221 1 2345666
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHHHhcCCCCC---CHHHHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYA-----CVVDLLARAGMVEEAEKFIEEKMGGLGGG---DANVWGAL 341 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 341 (445)
+...+...|++++|...+++......-......+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77777888888888888888765421111111121 23344668888888888888876543111 13356677
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
...+...|++++|...++++.+..+. ...++..++.++...|++++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 78888888999998888888764332 113566678888888999988888887754
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.3e-12 Score=121.95 Aligned_cols=211 Identities=11% Similarity=0.003 Sum_probs=157.7
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhh
Q 047840 144 FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI-TQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFE 222 (445)
Q Consensus 144 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 222 (445)
+++++..+++..... +.+...+..+...+...|++ ++|+..|+++.+.. +.+...+..+..+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555544432 23566666777777777777 77777777777664 4456667777777777777777777776
Q ss_pred cCCC--CChhhHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC--------CcHHHH
Q 047840 223 GISN--KDAGAWNAMISGVAMN---------GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA--------KMVRDG 283 (445)
Q Consensus 223 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a 283 (445)
+..+ |+...+..+...+... |++++|+..|++..+.. +.+...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6543 4455666777777777 88999999999888764 23577888888888887 889999
Q ss_pred HHHHHHhHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047840 284 LNLFENMSAVYGVEP----QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWR 359 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 359 (445)
...|++..+. .| +...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|++.+.
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999864 44 67888899999999999999999999988766 6677888999999999998888887654
Q ss_pred HH
Q 047840 360 KL 361 (445)
Q Consensus 360 ~~ 361 (445)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=2.1e-10 Score=110.23 Aligned_cols=212 Identities=8% Similarity=-0.058 Sum_probs=136.8
Q ss_pred HHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHH-HHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047840 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSAL-SVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSG 259 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 259 (445)
.+|++++... +....+|...+..+...|+.++|. .+|++... .+...|...+....+.|+++.|.++|+++....
T Consensus 330 ~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l 408 (679)
T 4e6h_A 330 YVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI 408 (679)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3444444432 334445555555556667777775 77765543 244456667777777888888888888876531
Q ss_pred ---------CCCC------------HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc-CChH
Q 047840 260 ---------TQPT------------ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA-GMVE 317 (445)
Q Consensus 260 ---------~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 317 (445)
-.|+ ...|...+....+.|+.+.|..+|..+.+.. ..+....|...+..-.+. ++.+
T Consensus 409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHH
Confidence 0132 2346666666667778888888888887530 112233343333323333 4478
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CchhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT---DFSTHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.|.++|+..++.- +.+...|...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+..+.++
T Consensus 488 ~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 488 TACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888877653 556677777888777888888888888888887663 445666777777778888888888888
Q ss_pred HHhc
Q 047840 395 ISET 398 (445)
Q Consensus 395 m~~~ 398 (445)
+.+.
T Consensus 567 ~~~~ 570 (679)
T 4e6h_A 567 FFEK 570 (679)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.47 E-value=7.5e-12 Score=113.84 Aligned_cols=230 Identities=10% Similarity=0.007 Sum_probs=128.8
Q ss_pred HHHcCCChHHHHHHhccCCC-----C----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CC-----CHHHHHHHH
Q 047840 106 GYGKMGDFENARELFEKMPE-----R----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM-KP-----NESGLVSVL 170 (445)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p-----~~~~~~~l~ 170 (445)
.+...|++++|...|++... + ...++..+...|...|++++|+..+++..+.-. .+ ...++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34444555555555444322 1 234566777777777777777777777654210 11 123555666
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCC-CchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLE-KNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
..|...|++++|...++++.+.... ++... ...++..+...|...|++++|+
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQL---------------------------MGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------HHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHH---------------------------HHHHHHHHHHHHHHCCCHHHHH
Confidence 6666667777776666665543100 00000 0123444555556666666666
Q ss_pred HHHHHHHHc----CC-CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC---CCCChhHHHHHHHHHHhcCC---hHH
Q 047840 250 ELFDRMVKS----GT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG---VEPQLEHYACVVDLLARAGM---VEE 318 (445)
Q Consensus 250 ~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~ 318 (445)
..+++..+. +. +....++..+...+...|++++|...+++...... .+.....+..+...|...|+ +++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 666655441 22 22344566666667777777777777766554311 11112234556666777777 677
Q ss_pred HHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 319 AEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 319 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
|..++++. +..| ....+..+...|...|++++|...++++.+..
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 77777766 3233 33456677777888888888888888877643
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.45 E-value=1.2e-11 Score=99.61 Aligned_cols=169 Identities=13% Similarity=0.080 Sum_probs=145.4
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
...+..+...+...|++++|...|+++... +...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345666778888899999999999887653 56678888999999999999999999998863 34677888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
...|++++|...++.+... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999874 24567788889999999999999999999988776 66788999999999999999999
Q ss_pred HHHHHHHHHhCCCCch
Q 047840 355 NRVWRKLAEMGITDFS 370 (445)
Q Consensus 355 ~~~~~~~~~~~~~~~~ 370 (445)
...++++.+..|++..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999998887654
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.44 E-value=6.8e-12 Score=105.18 Aligned_cols=191 Identities=10% Similarity=-0.024 Sum_probs=96.5
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN----KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLT 272 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 272 (445)
++..+......+...|++++|...|++... ++...+..+..++...|++++|+..+++..+... .+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 344555555555556666666655554322 3444444455555555666666666555555321 13344555555
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYGVEPQL-------EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALLS 343 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 343 (445)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|.+.|++.++.. +. +...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 5555566666666655555431 1122 234444555555555566666555555433 22 2344555555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++... +...++++....+.++..+.. ......+.+++|...+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 54332 233344444444443322222 2233344458999999888764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=1.4e-11 Score=103.30 Aligned_cols=207 Identities=5% Similarity=-0.019 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHH
Q 047840 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMIS 237 (445)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 237 (445)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|...|++..+ .+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 467888899999999999999999999999987447777888899999999999999999997754 35568889999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTE-------TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVV 307 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 307 (445)
.|...|++++|+..+++..+... .+. ..|..+...+...|++++|...|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 99999999999999999988632 234 4577777888899999999999999984 3565 56677777
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
.+|... +..+++++...+ ..+...+.... ....+.+++|+..++++++..|+++.+...+..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 777654 344556665554 44555555444 33456789999999999999999887777665543
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=3.6e-10 Score=108.69 Aligned_cols=221 Identities=7% Similarity=0.021 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHH-HHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 146 EVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGL-WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 146 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+..+|++.+.. .+-+...|...+..+...|+.+.|. .+|++..... |.+...+...+....+.|+++.|..+|+++
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345566666654 2336667777777778889999996 9999998753 566777888888899999999999999877
Q ss_pred CC-------------CC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-CC
Q 047840 225 SN-------------KD------------AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH-AK 278 (445)
Q Consensus 225 ~~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~ 278 (445)
.. |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .+
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 53 21 236888888888899999999999999876111223334333222223 35
Q ss_pred cHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChHHHHH
Q 047840 279 MVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
+.+.|..+|+...+.+ +.+...+...++.....|+.+.|..+|++.+.....+ ....|...+..-...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6999999999999863 4456677788888888999999999999998765222 34688999998899999999999
Q ss_pred HHHHHHHhCCCCch
Q 047840 357 VWRKLAEMGITDFS 370 (445)
Q Consensus 357 ~~~~~~~~~~~~~~ 370 (445)
+.+++.+..|+++.
T Consensus 563 v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 563 LEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHSTTCCH
T ss_pred HHHHHHHhCCCCcH
Confidence 99999999998653
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.39 E-value=3.5e-11 Score=109.21 Aligned_cols=231 Identities=10% Similarity=0.035 Sum_probs=106.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC-C-----chhhhh
Q 047840 134 IMAAYSRISDFKEVLSLFRQMQEVG-MKPN----ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLE-K-----NVILAT 202 (445)
Q Consensus 134 l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 202 (445)
....+...|++++|+..|++..... -.++ ..++..+...+...|+++.|...+++..+.... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3445667777777777777765421 0112 345566666677777777777777666543100 0 122344
Q ss_pred HHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhcC
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQP-TETTFVAVLTTCTHA 277 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~ 277 (445)
.+..+|...|++++|...| ++..+. +..+ ...++..+...|...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHL-------------------------------EAALELAMDIQNDRFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH-------------------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 4444455555555554444 333221 0000 112344444445555
Q ss_pred CcHHHHHHHHHHhHHhh---CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHcCC
Q 047840 278 KMVRDGLNLFENMSAVY---GVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~ 350 (445)
|++++|...+++..... +.+....++..+..+|.+.|++++|...+++..+. +-+.....+..+...+...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 55555555554444310 11112334444555555555555555555554332 111112233333334444444
Q ss_pred ---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 351 ---IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 351 ---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+.+|+..+++.. ..|.....+..++..|...|++++|.+.+++..
T Consensus 316 ~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 316 ERKIHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444311 111122344455555666666666655555543
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=8.5e-12 Score=113.27 Aligned_cols=189 Identities=8% Similarity=-0.097 Sum_probs=137.2
Q ss_pred HHHHHccCChHHHHHHhhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CC-CHHHHHH
Q 047840 205 VDMYSKCGHVHSALSVFEGISN-----K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKS----GT-QP-TETTFVA 269 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p-~~~~~~~ 269 (445)
...+...|++++|...|++... + ...++..+...|...|+++.|+..+++..+. +. .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344555666666655554332 1 1335677778888888888888888877653 11 11 2457788
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhc-----CCCCCCHHHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMG-----GLGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 340 (445)
+...|...|++++|...+++......-.++ ..++..+..+|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888999999999999999888763221122 45678889999999999999999999876 44 344778999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHcCC---hHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGIT-----DFSTHVLSYNIYKEAGW---DMEANKVRKL 394 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 394 (445)
+...+...|++++|...++++.+..+. ....+..+...|...|+ +.+|...+++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999999999996432 23345567777888888 7777776665
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=2e-09 Score=97.29 Aligned_cols=252 Identities=10% Similarity=0.004 Sum_probs=137.5
Q ss_pred HhhhcCCchhHHHHHHHHHHHhcCCCChh----hHHHHHHHHHhcCCHHHHHHHhccCCC-----CC----hhhHHHHHH
Q 047840 39 ACVILGPLENFGMFVHAHVVKFGFGEDPF----VVSSLLEFYSLVHKMGTARALFDKSPD-----RD----VVTWTTMVD 105 (445)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~ 105 (445)
.+...|+++ .+...++.........+.. .++.+...+...|++++|...+++... .+ ..++..+..
T Consensus 23 ~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPD-EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHH-HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHH-HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 334455555 5555555544432111111 234444455555555555555554322 11 112344555
Q ss_pred HHHcCCChHHHHHHhccCCC-------C----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC--C--CHHHHHHHH
Q 047840 106 GYGKMGDFENARELFEKMPE-------R----NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMK--P--NESGLVSVL 170 (445)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~~~~l~ 170 (445)
.+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666666655431 1 1234666778888999999999999887653221 1 234667778
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCch-hhhh-----HHHHHHHccCChHHHHHHhhcCCCCCh-------hhHHHHHH
Q 047840 171 TACAHLGAITQGLWVHSYAKRYHLEKNV-ILAT-----AVVDMYSKCGHVHSALSVFEGISNKDA-------GAWNAMIS 237 (445)
Q Consensus 171 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~ 237 (445)
..+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++....+. ..+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8888899999999999888764212211 1111 223346677888888887776654321 12345555
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 238 GVAMNGDAKKSLELFDRMVKS----GTQPTE-TTFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
.+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++..
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666666666666655432 111111 133333444445555555555555544
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=4.1e-11 Score=103.67 Aligned_cols=224 Identities=11% Similarity=0.043 Sum_probs=151.0
Q ss_pred HccCChhHHHHHHHHHHHc-------CCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--------C---ChhhHHHH
Q 047840 174 AHLGAITQGLWVHSYAKRY-------HLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--------K---DAGAWNAM 235 (445)
Q Consensus 174 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~l 235 (445)
...|++++|..++++..+. ..+....++..+..+|...|++++|...|++... . ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4677888888888777652 2233466788888899999999999988876542 1 24477888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh-----C-CCCChhH
Q 047840 236 ISGVAMNGDAKKSLELFDRMVKS------GT-QPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVY-----G-VEPQLEH 302 (445)
Q Consensus 236 ~~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~ 302 (445)
...|...|++++|+..+++.... .. +....++..+...+...|++++|...++++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999887664 11 2235567778888889999999999998887531 0 1123556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcC-------CCC-CCHHHHHHHHHHHHHcCChHH------HHHHHHHHHHhCCCC
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGG-------LGG-GDANVWGALLSACRIYGKIEV------GNRVWRKLAEMGITD 368 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~g~~~~------a~~~~~~~~~~~~~~ 368 (445)
+..+..+|...|++++|...+++..+. ... .....|..+.......+.... +...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778888888999999999999887643 111 222334444433333333222 222222222223345
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788999999999999999999998765
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=4.8e-11 Score=116.04 Aligned_cols=164 Identities=11% Similarity=0.137 Sum_probs=125.4
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT 273 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 273 (445)
+...++.|..+|.+.|++++|+..|++..+ .+..+|..+..+|.+.|++++|+..|++..+... -+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 345555666666666666666666655432 3456677777788888888888888888877532 256778888888
Q ss_pred hhcCCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH
Q 047840 274 CTHAKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE 352 (445)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 352 (445)
+...|++++|.+.|++..+. .| +...|..+..+|...|++++|++.|++.++.. +.+...+..+..++...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 88889999999988888864 44 46788888889999999999999999888766 567888999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 047840 353 VGNRVWRKLAEMG 365 (445)
Q Consensus 353 ~a~~~~~~~~~~~ 365 (445)
+|.+.++++++..
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999998888744
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.29 E-value=3.4e-10 Score=96.79 Aligned_cols=183 Identities=8% Similarity=0.060 Sum_probs=123.5
Q ss_pred HHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 182 GLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNK-----DAGAWNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 182 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
+...+++....+ +++......+..++...|++++|++++.+.... +...+...+..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444433 233333445556666666666666666655322 34466677888889999999999999997
Q ss_pred HcCCCC-----CHHHHHHHHHH--hhc--CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 257 KSGTQP-----TETTFVAVLTT--CTH--AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 257 ~~~~~p-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
+. .| +..+...+..+ ... .++..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 55 35666666655 222 34899999999998754 4553333445558889999999999998766
Q ss_pred cCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 328 GGL---------GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 328 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
+.. -+.|+.++..++......|+ +|.++++++.+..|+++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 531 14567777666666666776 88999999999999987544
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.28 E-value=8e-11 Score=102.59 Aligned_cols=165 Identities=8% Similarity=-0.002 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhcC-CcHHHHHHHHHHhHHhhCCCCC----h
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKS----GTQP-TETTFVAVLTTCTHA-KMVRDGLNLFENMSAVYGVEPQ----L 300 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~ 300 (445)
+|+.+..+|...|++++|+..+++.... |-.+ -..++..+...|... |++++|...|++......-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4555566666666666666666655432 1100 134566677777775 8888888888877754211111 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh---
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA------NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST--- 371 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 371 (445)
.++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...+++.++..|.....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 45677788888888888888888887765422211 256777778888888888888888888877764332
Q ss_pred --HHHHHHHHH--HcCChHHHHHHHHHH
Q 047840 372 --HVLSYNIYK--EAGWDMEANKVRKLI 395 (445)
Q Consensus 372 --~~~l~~~~~--~~g~~~~A~~~~~~m 395 (445)
+..++.++. ..+++++|...++.+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334555554 346677777777544
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=3.5e-10 Score=96.81 Aligned_cols=180 Identities=9% Similarity=-0.012 Sum_probs=101.4
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHHH
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISN--K-D---AGAWNAMISGVAMNGDAKKSLELFDRMVKSGT-QPT-ETTFVA 269 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~-~~~~~~ 269 (445)
...+..+...+.+.|++++|...|+++.. | + ..++..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444445555555555555555554433 1 2 23444455555555555555555555554321 111 223334
Q ss_pred HHHHhhc--------CCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHH
Q 047840 270 VLTTCTH--------AKMVRDGLNLFENMSAVYGVEPQL-EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 340 (445)
+..++.. .|++++|...|+++... .|+. .....+..... ....+ ...+..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~-------~~~~~-----------~~~~~~ 153 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRE-------LRAKL-----------ARKQYE 153 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHH-------HHHHH-----------HHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHH-------HHHHH-----------HHHHHH
Confidence 4444444 55555555555555543 2221 11111100000 00000 011366
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHc----------CChHHHHHHHHHHHhc
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYKEA----------GWDMEANKVRKLISET 398 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 398 (445)
+...|...|++++|+..|+++++..|++ +.++..++.+|... |++++|...++++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 7888999999999999999999998874 45788889999877 8999999999998764
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=1.7e-09 Score=92.55 Aligned_cols=241 Identities=11% Similarity=0.059 Sum_probs=166.0
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
++-..-.|++..++.-...+. .........-+.+++...|++... ....|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 344556778877777333221 111223333445667666666531 112233333333333 33333
Q ss_pred HHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 047840 215 HSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PTETTFVAVLTTCTHAKMVRDGLNLFENM 290 (445)
Q Consensus 215 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 290 (445)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+...+..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666765543 45556678888999999999999999998776542 25667778888999999999999999999
Q ss_pred HHhhCCCC-----ChhHHHHHHHHHH--hcC--ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 291 SAVYGVEP-----QLEHYACVVDLLA--RAG--MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 291 ~~~~~~~~-----~~~~~~~l~~~~~--~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
.+. .| +..+...|+.++. ..| ++.+|..+|+++.+.. |+..+-..++.++...|++++|.+.++.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 865 66 3556666666633 334 8999999999997654 55334444445889999999999999988
Q ss_pred HHh----------CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 362 AEM----------GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 362 ~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
.+. +|.++.++..++.+....|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 775 58889899888888888898 8999999998753
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.28 E-value=9e-10 Score=91.91 Aligned_cols=62 Identities=15% Similarity=0.057 Sum_probs=54.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHcCChHHHHHHHHHHHhcCCc
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDF---STHVLSYNIYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
.+...+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+.+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 456778899999999999999999999865 56888999999999999999999998876543
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=2.2e-10 Score=86.78 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=82.3
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...+...|++++|..+++.+... . +.+...+..+...+...|++++|...++++.... +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 344455555566666666666666543 1 2344555566666666667777777666665544 445566666677777
Q ss_pred HcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..|++++|.+.++++.+..|.++..+..++.++.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777777777777766666777777777777777777777666543
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=6.2e-11 Score=102.51 Aligned_cols=226 Identities=12% Similarity=0.030 Sum_probs=158.8
Q ss_pred HHhcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc------CC-CCchhhhhH
Q 047840 138 YSRISDFKEVLSLFRQMQEV-------GMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRY------HL-EKNVILATA 203 (445)
Q Consensus 138 ~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ 203 (445)
....|++++|+..|++..+. +.+....++..+...+...|++++|...++++.+. +. +....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567888888888776552 21224667888999999999999999999998865 22 334668889
Q ss_pred HHHHHHccCChHHHHHHhhcCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISN-------K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKS------GTQP-TET 265 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~ 265 (445)
+..+|...|++++|...|.+... + ...++..+...|...|++++|+..+++..+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999987643 1 2457888899999999999999999998765 1133 346
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhh------CCCCC-hhHHHHHHHHHHhcCC------hHHHHHHHHHHhcCCCC
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVY------GVEPQ-LEHYACVVDLLARAGM------VEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~ 332 (445)
++..+...+...|++++|...++++.... ...+. ...+..+...+...+. +.++...++...... +
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-P 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-H
Confidence 78888899999999999999999988641 11222 2333333333433332 333333333332111 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
....++..+...|...|++++|...++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567888999999999999999999998764
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.24 E-value=2.3e-10 Score=99.68 Aligned_cols=206 Identities=9% Similarity=0.020 Sum_probs=124.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHH
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEV----GMKPN-ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYS 209 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 209 (445)
...|...|++++|.+.|.+.... |-+++ ..+|..+..+|...|++++|...+++..+.. .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------T 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------H
Confidence 55666677777777776665432 21111 3455666666666666666666666555421 1
Q ss_pred ccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhcCCcHHHH
Q 047840 210 KCGHVHSALSVFEGISNKDAGAWNAMISGVAMN-GDAKKSLELFDRMVKSGTQ-PT----ETTFVAVLTTCTHAKMVRDG 283 (445)
Q Consensus 210 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a 283 (445)
..|+...+ ..+++.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|
T Consensus 109 ~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 109 HRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 12222221 22456677777775 8888888888877653110 01 34577778888888899999
Q ss_pred HHHHHHhHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHH--HcCC
Q 047840 284 LNLFENMSAVYGVEPQL-----EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA------NVWGALLSACR--IYGK 350 (445)
Q Consensus 284 ~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~ 350 (445)
...|++......-.+.. ..+..+..++...|++++|...|++.++.. |+. ..+..++.++. ..++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 98888888641111111 145667777888899999999998887543 221 13444555554 3466
Q ss_pred hHHHHHHHHHHHHhCCCC
Q 047840 351 IEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 351 ~~~a~~~~~~~~~~~~~~ 368 (445)
+++|+..|+++...+|..
T Consensus 256 ~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHhccCCccHHHH
Confidence 788888887777666644
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.23 E-value=5.6e-10 Score=96.87 Aligned_cols=179 Identities=8% Similarity=-0.013 Sum_probs=148.5
Q ss_pred ChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 213 HVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 213 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
..+.....+......+...+..+...+...|++++|+..|++...... -+...+..+...+...|++++|...++.+..
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 345555666666655667788888899999999999999999988643 3677888889999999999999999999985
Q ss_pred hhCCCCChhHHHHH-HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--c
Q 047840 293 VYGVEPQLEHYACV-VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD--F 369 (445)
Q Consensus 293 ~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~ 369 (445)
. .|+....... ...+...++.++|...+++..... +.+...+..+...+...|++++|+..|+++++.+|.+ .
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~ 255 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADG 255 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGG
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccc
Confidence 4 5554433332 334667788899999999988877 7788999999999999999999999999999999986 8
Q ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 370 STHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..+..++.++...|+.++|...+++..
T Consensus 256 ~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 256 QTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 889999999999999999999887654
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.23 E-value=3.1e-11 Score=93.68 Aligned_cols=143 Identities=8% Similarity=-0.098 Sum_probs=106.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM 315 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 315 (445)
..+...|++++|+..+.+.... .| +...+..+...|.+.|++++|...|++..+. -+-+...|..+..+|...|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3445567777887777776543 22 2344556777788888888888888888764 13357778888888888889
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 316 VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRV-WRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
+++|...|++.++.. +.+..+|..+...|.+.|++++|.+. ++++++..|.++.++......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999988888888766 56778888888888888888766554 588888999888888888888877775
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.23 E-value=3e-10 Score=97.26 Aligned_cols=205 Identities=12% Similarity=0.047 Sum_probs=149.0
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCc---hhhhhHHHHHHHccCChHHHHHHhhcCCC--C-C---hhh
Q 047840 161 PNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKN---VILATAVVDMYSKCGHVHSALSVFEGISN--K-D---AGA 231 (445)
Q Consensus 161 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~ 231 (445)
.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+ | + ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 366778888899999999999999999999874 333 56788899999999999999999998754 2 2 346
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHH
Q 047840 232 WNAMISGVAM--------NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHY 303 (445)
Q Consensus 232 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (445)
+..+..++.. .|++++|+..|+++.+.. |+... ...+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~-------------~~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHEL-------------VDDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTT-------------HHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchh-------------HHHHHHHHHHHHHH-----HHHHH
Confidence 7778888888 999999999999998863 33211 11111112222211 11235
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCC-C-CHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHhCCCCchh
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGGLGG-G-DANVWGALLSACRIY----------GKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
..+...|...|++++|...|+++++.... + ....+..+..+|... |++++|...++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778899999999999999998765411 1 356788888888866 88999999999999999987643
Q ss_pred ---HHHHHHHHHHcCChH
Q 047840 372 ---HVLSYNIYKEAGWDM 386 (445)
Q Consensus 372 ---~~~l~~~~~~~g~~~ 386 (445)
...+..++.+.|+++
T Consensus 232 ~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 232 RTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444443
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.22 E-value=6.6e-10 Score=84.04 Aligned_cols=133 Identities=12% Similarity=0.191 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLL 310 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 310 (445)
+|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56777888889999999999999988764 336777888888888999999999999998864 244567788888999
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
...|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999999988765 567888899999999999999999999999988875
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.20 E-value=8.6e-11 Score=114.73 Aligned_cols=170 Identities=11% Similarity=-0.018 Sum_probs=137.4
Q ss_pred HccCChHHHHHHhhcCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC
Q 047840 209 SKCGHVHSALSVFEGIS-----------NKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 277 (445)
...|++++|.+.+++.. ..+...+..+...+...|++++|+..|++..+.+. -+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence 67788999988888765 23566788888888899999999999998887632 3667788888888889
Q ss_pred CcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
|++++|...|+++.+. .| +...+..+..+|.+.|++++ .+.|++.++.+ +.+...|..+..++...|++++|++
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988864 34 46777888888899999999 99998888766 6677888889999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.|+++++.+|.+..++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999888888888888766554
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=6.6e-10 Score=88.79 Aligned_cols=160 Identities=10% Similarity=0.046 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-H
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL-L 310 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 310 (445)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445556666777777777776655432 224556666666677777777777777776643 2333322222111 1
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHcCChHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD--FSTHVLSYNIYKEAGWDMEA 388 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 388 (445)
...+...+|...+++.++.. +.+...+..+..++...|++++|...|+++++..|.. +..+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223345677777777655 5567888888888888889999998888888888763 55788888888888888888
Q ss_pred HHHHHHHH
Q 047840 389 NKVRKLIS 396 (445)
Q Consensus 389 ~~~~~~m~ 396 (445)
...+++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=9.4e-09 Score=84.72 Aligned_cols=163 Identities=9% Similarity=-0.005 Sum_probs=120.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC----cHHHHHHHHHHhHHhhCCCCChhHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK----MVRDGLNLFENMSAVYGVEPQLEHY 303 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 303 (445)
++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 55566666677777778888888888777754 45566666666766 5 788888888888653 355666
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 304 ACVVDLLAR----AGMVEEAEKFIEEKMGGLGGG--DANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 304 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
..|...|.. .+++++|..+|++..+.+ ++ ++..+..|...|.. .++.++|...|+++.+. +.++.++.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 777777766 778888888888887666 21 26777788888877 77888888888888887 55566788
Q ss_pred HHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 047840 374 LSYNIYKEA-G-----WDMEANKVRKLISETGM 400 (445)
Q Consensus 374 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 400 (445)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888888764 3 78888888888877664
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.13 E-value=1.4e-09 Score=104.18 Aligned_cols=162 Identities=13% Similarity=0.042 Sum_probs=128.4
Q ss_pred cCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHH
Q 047840 211 CGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLF 287 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 287 (445)
.|++++|...|++..+ .+...+..+...+...|++++|++.+++..+.. +.+...+..+...+...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998765 356789999999999999999999999998863 236778888999999999999999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHh
Q 047840 288 ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY---GKIEVGNRVWRKLAEM 364 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 364 (445)
++..+. .+.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.++++++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999875 23457788899999999999999999999998776 56788999999999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 047840 365 GITDFSTHVLSY 376 (445)
Q Consensus 365 ~~~~~~~~~~l~ 376 (445)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999887777666
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=2.6e-10 Score=88.36 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=105.2
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
|...+...|++++|+..+..... ..|+ ...+-.+...|.+.|++++|++.|++.++.. +.+..+|..+..++...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 44566778899999999988874 2343 4556678899999999999999999998877 67899999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHH-HHHHHh
Q 047840 349 GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKV-RKLISE 397 (445)
Q Consensus 349 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 397 (445)
|++++|+..|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887765 576655
No 103
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.10 E-value=9.7e-08 Score=89.09 Aligned_cols=338 Identities=8% Similarity=-0.067 Sum_probs=177.6
Q ss_pred CCchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHh-cCC-CChhhHHHHHHHHH----hcCCH
Q 047840 9 NFPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF-GFG-EDPFVVSSLLEFYS----LVHKM 82 (445)
Q Consensus 9 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~----~~g~~ 82 (445)
|+++.+..+|++... ..|+...|...+....+.++..+....+|+.++.. |.. .+..+|...+..+. ..+++
T Consensus 28 ~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 678888888888877 34788888888887777664322677788877764 433 35677777776654 24678
Q ss_pred HHHHHHhccCCC-CCh---hhHHHHHHHHH-------------cCCChHHHHHHhccCCC----CChhhHHHHHHHHHhc
Q 047840 83 GTARALFDKSPD-RDV---VTWTTMVDGYG-------------KMGDFENARELFEKMPE----RNAVSWSAIMAAYSRI 141 (445)
Q Consensus 83 ~~a~~~~~~~~~-~~~---~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~ 141 (445)
+.+..+|++... |.. ..|......-. ..+.+..|..+++.+.. .+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 888888887654 211 11221111000 00112222322222211 1333454444432221
Q ss_pred C--C-----HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 142 S--D-----FKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 142 ~--~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
+ - .+.+..+|++++... +.++..|...+..+...|+++.|..++++.... |.+...+...... .+.++.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~ 261 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV 261 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH
Confidence 1 0 345667888877653 445677777777778888888888888888877 4444333322111 011110
Q ss_pred HHHHHHhhcCC--C-------C---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhcCCcHH
Q 047840 215 HSALSVFEGIS--N-------K---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTHAKMVR 281 (445)
Q Consensus 215 ~~a~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~ 281 (445)
...+.+... . + ....|...+....+.++.+.|..+|.+. .. ..++...|...... +...++.+
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~ 337 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRA 337 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSH
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChH
Confidence 111111110 0 0 1123444555555556666666666666 21 11233333221111 11122466
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
.|..+|+...+.+ +.++..+...++.....|+.+.|..+|+++ ......|...+..-...|+.+.+..+++++
T Consensus 338 ~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 338 TPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666666542 122334444555555666666666666665 224556666666556666666666666666
Q ss_pred HH
Q 047840 362 AE 363 (445)
Q Consensus 362 ~~ 363 (445)
.+
T Consensus 411 ~~ 412 (493)
T 2uy1_A 411 MD 412 (493)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=1.6e-09 Score=83.54 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=91.9
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 296 VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 296 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
+.|+ ...+..+...+.+.|++++|...|++++... |.++..|..+..++...|++++|+..|+++++.+|+++.++..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3443 5567778888999999999999999998877 6788999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 375 SYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
++.+|.+.|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988754
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.08 E-value=3.4e-08 Score=85.35 Aligned_cols=222 Identities=10% Similarity=0.048 Sum_probs=111.8
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCchhhhhHHHHHH----HccCCh
Q 047840 141 ISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG--AITQGLWVHSYAKRYHLEKNVILATAVVDMY----SKCGHV 214 (445)
Q Consensus 141 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~ 214 (445)
....++|+++++.++..+ +-+...|+.--..+...+ ++++++..++.+.... |-+..+|+.-...+ ...+
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~-- 121 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN-- 121 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT--
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc--
Confidence 334467888888877743 224455666666666666 7777777777777664 33444444333333 2220
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH--HHHHHHHHhHH
Q 047840 215 HSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR--DGLNLFENMSA 292 (445)
Q Consensus 215 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~ 292 (445)
..+++++++.+++++.+...+ +...|+.-...+.+.|.++ ++++.++.+.+
T Consensus 122 --------------------------~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 122 --------------------------NDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp --------------------------TCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred --------------------------ccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence 003444455555544443222 4444444444444444444 45555555543
Q ss_pred hhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHhC
Q 047840 293 VYGVEPQLEHYACVVDLLARAGM------VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIE-VGNRVWRKLAEMG 365 (445)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~ 365 (445)
. -+-|...|+.-...+...+. ++++++.+++++... +-|...|+.+...+.+.|+.. .+..+.+++.+.+
T Consensus 175 ~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 175 T--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp H--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred h--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 2 12233344433333333333 455555555555444 445555555555555555432 2334444444433
Q ss_pred ---CCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 366 ---ITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 366 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
|.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455555555555555566666666555554
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=4e-09 Score=101.11 Aligned_cols=159 Identities=7% Similarity=-0.036 Sum_probs=111.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELF 252 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 252 (445)
.|++++|...++++.+.. +.+...+..+...+.+.|++++|...|++..+ .+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477888999998888764 44677888888899999999999999987654 35668888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHHHhcC
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA---GMVEEAEKFIEEKMGG 329 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 329 (445)
++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9888763 235778888888899999999999999998864 133467778888888888 9999999999988776
Q ss_pred CCCCCHHHHH
Q 047840 330 LGGGDANVWG 339 (445)
Q Consensus 330 ~~~~~~~~~~ 339 (445)
+ +.+...+.
T Consensus 158 ~-p~~~~~~~ 166 (568)
T 2vsy_A 158 G-VGAVEPFA 166 (568)
T ss_dssp T-CCCSCHHH
T ss_pred C-CcccChHH
Confidence 5 33333343
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=1.3e-07 Score=81.66 Aligned_cols=235 Identities=11% Similarity=-0.001 Sum_probs=162.7
Q ss_pred HHcCC-ChHHHHHHhccCCC--C-ChhhHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hcc
Q 047840 107 YGKMG-DFENARELFEKMPE--R-NAVSWSAIMAAYSRIS--DFKEVLSLFRQMQEVGMKPNESGLVSVLTAC----AHL 176 (445)
Q Consensus 107 ~~~~g-~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~ 176 (445)
..+.| ..++|+++++.+.. | +..+|+.--..+...| +++++++.++.+...+.+ +...|+.-...+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33444 45789999999875 4 4556887788888888 999999999999886432 556666554444 333
Q ss_pred ---CChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChH--HHHHH
Q 047840 177 ---GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAK--KSLEL 251 (445)
Q Consensus 177 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~ 251 (445)
+++++++.+++.+.+.. +-+..+ |+.-.-.+.+.|.++ ++++.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~a-------------------------------W~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHV-------------------------------WSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHH-------------------------------HHHHHHHHHHTTCTTCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHH-------------------------------HHHHHHHHHHhcccChHHHHHH
Confidence 56666666666666553 333333 444334444445555 77888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhcCCc------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH-HHHHHH
Q 047840 252 FDRMVKSGTQPTETTFVAVLTTCTHAKM------VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE-AEKFIE 324 (445)
Q Consensus 252 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 324 (445)
++++.+..+. |...|+.....+.+.+. ++++++.++.+... -+-|...|+.+...+.+.|+... +..+..
T Consensus 169 ~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 169 VDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 8888776543 66677666666666665 78888888888864 24567788888878888777444 556777
Q ss_pred HHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCchhHHHHHH
Q 047840 325 EKMGGL--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAE-MGITDFSTHVLSYN 377 (445)
Q Consensus 325 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~ 377 (445)
++.+.+ -+.++..+..+..++.+.|+.++|.++++.+.+ .+|.+...|...+.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 665432 145778899999999999999999999999987 78887766665543
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=3.7e-09 Score=92.75 Aligned_cols=157 Identities=10% Similarity=-0.026 Sum_probs=104.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hh
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSG---TQPT--ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LE 301 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 301 (445)
+|+.+...|...|++++|+..|++....- -.|. ..++..+...|.. |++++|...|++......-..+ ..
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 56666777777788888877777664421 1111 3466677777777 8899998888887754211111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh-----
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGD-ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST----- 371 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----- 371 (445)
++..+...|...|++++|+..|++.++. +..+. ...+..++.++...|++++|...|++.+ ..|.....
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~ 235 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAA 235 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHH
Confidence 6777888888999999999998887653 11111 2356667777778899999999999998 88763322
Q ss_pred HHHHHHHHHHcCChHHHHH
Q 047840 372 HVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~ 390 (445)
...++.++ ..|+.+.+.+
T Consensus 236 l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 236 LEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHH
Confidence 33444444 5677666555
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.04 E-value=5.7e-09 Score=77.98 Aligned_cols=109 Identities=5% Similarity=-0.134 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
.+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 3445555666666666666666666643 12345566666666666666666666666666555 45566666666666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
...|++++|++.|+++++.+|.+..++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 66677777777777777766666665555543
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.04 E-value=4.4e-09 Score=102.69 Aligned_cols=171 Identities=11% Similarity=-0.022 Sum_probs=135.0
Q ss_pred HccCChhHHHHHHHHHH--------HcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhc
Q 047840 174 AHLGAITQGLWVHSYAK--------RYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMN 242 (445)
Q Consensus 174 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 242 (445)
...|++++|...++++. +.. +.+...+..+..++.+.|++++|...|++..+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888999999998887 332 45667788888889999999999999987754 4677888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKF 322 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 322 (445)
|++++|+..|++..+... -+...+..+..++.+.|++++ ...|+++.+. -+.+...|..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888643 256677888888999999999 9999998864 133567888889999999999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHcCC
Q 047840 323 IEEKMGGLGGGDANVWGALLSACRIYGK 350 (445)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 350 (445)
|++..+.. +.+...+..+..++...++
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99987665 4456778888888766555
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=9.6e-09 Score=84.71 Aligned_cols=126 Identities=10% Similarity=-0.060 Sum_probs=94.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...+...|++++|...|++.. .|+...+..+..+|...|++++|...+++..+.. +.+...+..+..++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3344555667777888877777663 4566777777778888888888888888777655 556777888888888
Q ss_pred HcCChHHHHHHHHHHHHhCCCCc----------------hhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 347 IYGKIEVGNRVWRKLAEMGITDF----------------STHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
..|++++|++.|+++++..|.+. .++..++.+|.+.|++++|.+.+++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888888777655 67778888888888888888888877654
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=2.4e-08 Score=82.24 Aligned_cols=159 Identities=9% Similarity=0.012 Sum_probs=99.8
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCC-CChhhHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISN-KDAGAWNAMISGVAMNG----DAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
.+..|...|...+++++|..+|++..+ .++.++..+...|.. + ++++|+.+|++..+.| +...+..+...|
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y 95 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVL 95 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 333334444444444444444443322 233344444444444 4 6777777777776654 455666666666
Q ss_pred hc----CCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 275 TH----AKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLAR----AGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 275 ~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|..+|++..+. +.+...+..|..
T Consensus 96 ~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~ 170 (212)
T 3rjv_A 96 VNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGM 170 (212)
T ss_dssp TCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHH
T ss_pred HcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHH
Confidence 65 67888888888887743 332 6677777777777 77888888888888765 234456677777
Q ss_pred HHHHc-C-----ChHHHHHHHHHHHHhCCC
Q 047840 344 ACRIY-G-----KIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 344 ~~~~~-g-----~~~~a~~~~~~~~~~~~~ 367 (445)
.|... | +.++|...|+++.+.+.+
T Consensus 171 ~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 171 MFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 77653 3 788888888888887654
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=4.2e-09 Score=92.36 Aligned_cols=200 Identities=10% Similarity=-0.005 Sum_probs=145.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047840 175 HLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDR 254 (445)
Q Consensus 175 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 254 (445)
..|++++|..++++..+... .. + +...++++.|...|.+ ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35667778887777765421 11 0 1114778888777654 35677788999999988887
Q ss_pred HHHc----CCCC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCC--C--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 047840 255 MVKS----GTQP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVE--P--QLEHYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 255 m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
.... |..+ -..+|+.+...|...|++++|...|++....+.-. + ...++..+..+|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7553 1111 13477888888999999999999999887542111 1 13567788888888 999999999998
Q ss_pred HhcCCC---CC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHcCChHHHHHHHHH
Q 047840 326 KMGGLG---GG--DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF------STHVLSYNIYKEAGWDMEANKVRKL 394 (445)
Q Consensus 326 ~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 394 (445)
.++... .+ ...++..+...+...|++++|+..|+++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765321 11 146788999999999999999999999999765432 2566777888889999999999998
Q ss_pred HH
Q 047840 395 IS 396 (445)
Q Consensus 395 m~ 396 (445)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.02 E-value=6.8e-09 Score=77.53 Aligned_cols=102 Identities=6% Similarity=-0.076 Sum_probs=93.0
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHH
Q 047840 296 VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVL 374 (445)
Q Consensus 296 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 374 (445)
+.|+ ...+......|.+.|++++|++.|++.++.. +.+..+|..+..++...|++++|+..++++++.+|.++.+|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3444 4567778889999999999999999998877 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhc
Q 047840 375 SYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.+|...|++++|.+.|++..+.
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=1e-07 Score=82.84 Aligned_cols=164 Identities=10% Similarity=-0.041 Sum_probs=124.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGT-QPTET----TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYA 304 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 304 (445)
..+..+...|++++|..++++...... .|+.. .+..+...+...+++++|...++.+.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999877422 23321 2334666677888999999999999864111223 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcC-----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------chhH
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMGG-----LGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD------FSTH 372 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 372 (445)
.+..+|...|++++|...++++++. +..+ ...++..+...|...|++++|+..++++++..+.. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8999999999999999999998731 1122 23478899999999999999999999999854332 5678
Q ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHh
Q 047840 373 VLSYNIYKEAGW-DMEANKVRKLISE 397 (445)
Q Consensus 373 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 397 (445)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999998887754
No 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=1.3e-08 Score=80.02 Aligned_cols=130 Identities=8% Similarity=-0.083 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34566667778888999999999888864 23457778888889999999999999999988766 5678889999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHcCChHHHHHHHHHHHh
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN--IYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~ 397 (445)
+...|++++|...++++++..|.+...+..+.. .+...|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999988877754444 48888999999998887653
No 117
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=1.9e-08 Score=83.83 Aligned_cols=187 Identities=10% Similarity=0.015 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--chhhhhHHHHHHHccCChHHHHHHhhcCCC--C-Chh---hHH
Q 047840 162 NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK--NVILATAVVDMYSKCGHVHSALSVFEGISN--K-DAG---AWN 233 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~---~~~ 233 (445)
+...+..+...+...|++++|...|+++.+..... ....+..+..+|.+.|++++|...|+++.+ | +.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556666777888888888888888888763211 134566677788888888888888877643 2 221 344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-hHH---------
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-EHY--------- 303 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--------- 303 (445)
.+..++...+.. .+ ..|..+...+...|++++|...|+++.+. .|+. ..+
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~ 142 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFL 142 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHH
Confidence 444444432110 00 00111112223345556666666655542 2221 111
Q ss_pred --------HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 304 --------ACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 304 --------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
..+...|.+.|++++|...|+++++.. +.+. ..+..+..++.+.|+.++|.+.++.+....|.+.
T Consensus 143 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 143 KDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 245667889999999999999998764 2233 5688899999999999999999999999888754
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=2e-09 Score=83.06 Aligned_cols=98 Identities=16% Similarity=0.017 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|+..|+++++.+|+++.++..++.+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556667778888899999999998887766 667888888888888999999999999999999998888888999999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999988887654
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=8.9e-09 Score=84.62 Aligned_cols=134 Identities=8% Similarity=-0.004 Sum_probs=70.2
Q ss_pred HHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM 279 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 279 (445)
.+..+|.+.|++++|...|++..+ .+...+..+...+...|++++|+..|++..+... -+..++..+...|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 355556666666666666655432 2455666666666666777777777776666532 245555555555544332
Q ss_pred --HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 280 --VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 280 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
.+.+...++... ...|....+.....++...|++++|...|++.++. .|+......+.
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 233344444433 11222222333444555567777777777776643 35554444433
No 120
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=1.2e-08 Score=83.88 Aligned_cols=124 Identities=6% Similarity=-0.061 Sum_probs=69.7
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
+..++.+.|++++|...|++..+. -+.+...+..+..++...|++++|...|++.++.. +.+..+|..+..+|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 555666667777777777666653 12245566666666666777777777777666555 455666666666655443
Q ss_pred C--hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 350 K--IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 350 ~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+ .+.+...++++....|. ...+...+.++...|++++|...+++..+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2 23344444444322111 12344455566666677777777666543
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.98 E-value=1.5e-08 Score=75.19 Aligned_cols=117 Identities=11% Similarity=0.122 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
...+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 456667777788888888888888888764 23456677788888888899999999888887665 567788888888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcC
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAG 383 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 383 (445)
.+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999999999988888888888887776554
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.97 E-value=4.3e-08 Score=84.90 Aligned_cols=162 Identities=9% Similarity=0.027 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC--CChhhHH-HHH
Q 047840 160 KPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN--KDAGAWN-AMI 236 (445)
Q Consensus 160 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~-~l~ 236 (445)
+.+...+..+...+...|++++|...|+++.+.. |.+...+..+..++.+.|++++|...++++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3455666677777788888888888888888775 45667777788888888888888888887765 3322221 222
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC---hhHHHHHHHHHHhc
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ---LEHYACVVDLLARA 313 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 313 (445)
..+...++.+.|+..+++..... +.+...+..+...+...|++++|...|.++.+. .|+ ...+..++..+...
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHc
Confidence 23555666666777777766653 235566666666777777777777777777654 232 44566666666667
Q ss_pred CChHHHHHHHHHH
Q 047840 314 GMVEEAEKFIEEK 326 (445)
Q Consensus 314 g~~~~A~~~~~~~ 326 (445)
|+.++|...|++.
T Consensus 269 g~~~~a~~~~r~a 281 (287)
T 3qou_A 269 GTGDALASXYRRQ 281 (287)
T ss_dssp CTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 7766666666654
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.97 E-value=1e-08 Score=81.84 Aligned_cols=119 Identities=8% Similarity=0.015 Sum_probs=60.6
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHcCCh--H
Q 047840 276 HAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA-CRIYGKI--E 352 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 352 (445)
..|++++|...++..... .+.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 344555555555555432 12234455555555555555555555555554443 3344555555555 4455555 5
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 353 VGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+|...++++++..|.++.++..++.+|...|++++|...+++..+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555544
No 124
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.97 E-value=6.5e-08 Score=90.27 Aligned_cols=356 Identities=8% Similarity=-0.052 Sum_probs=216.6
Q ss_pred hcC-CchHHHHHHHHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC-HHH
Q 047840 7 QAN-FPKLSVFCYLDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK-MGT 84 (445)
Q Consensus 7 ~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~ 84 (445)
+.| +++.|..+|+.+... -|. ++++ .+..+|+..+.. .|+...|...+....+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e-~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYR-SLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHH-HHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHH-HHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 456 478888888887763 244 7788 999999998883 5799999988888777763 344
Q ss_pred HHHHhccCC------CCChhhHHHHHHHHH----cCCChHHHHHHhccCCC-CC--h-hhHHHHHHHHH-----------
Q 047840 85 ARALFDKSP------DRDVVTWTTMVDGYG----KMGDFENARELFEKMPE-RN--A-VSWSAIMAAYS----------- 139 (445)
Q Consensus 85 a~~~~~~~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~~--~-~~~~~l~~~~~----------- 139 (445)
...+|+... ..+...|...+.-+. ..|+.+.+..+|++... |. . ..|......-.
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 555665432 235677777776554 24678889999988765 31 1 11221111100
Q ss_pred --hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHc
Q 047840 140 --RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG-------AITQGLWVHSYAKRYHLEKNVILATAVVDMYSK 210 (445)
Q Consensus 140 --~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 210 (445)
..+.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|++++... +.+..+|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 11233344444544432100013334554444432211 1345678899988764 5567788888888899
Q ss_pred cCChHHHHHHhhcCCC-CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHhhc
Q 047840 211 CGHVHSALSVFEGISN-KD-AGAWNAMISGVAMNGDAKKSLELFDRMVKSG---------TQP---TETTFVAVLTTCTH 276 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~p---~~~~~~~l~~~~~~ 276 (445)
.|+.+.|..+|++... |+ ...|. .|....+.++. ++.+.+.- ..+ ....|...+....+
T Consensus 226 ~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp TTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999986543 32 22222 22222111222 22222210 011 12345556666666
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
.++.+.|..+|+.+ .. ...+...|...+..-.. .++.+.|..+|+...+.. +.++..|...++.....|+.+.|.
T Consensus 299 ~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 78899999999999 32 12344455433322222 346999999999988754 445667777888888899999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 356 RVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+|+++ +.....|...+..-...|+.+.+..++++..+
T Consensus 375 ~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999997 33566777788777888999999998888764
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.96 E-value=1.6e-08 Score=80.59 Aligned_cols=158 Identities=15% Similarity=0.072 Sum_probs=108.6
Q ss_pred hhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhc
Q 047840 201 ATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTT-CTH 276 (445)
Q Consensus 201 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~-~~~ 276 (445)
+..+...+.+.|++++|...|++... .+...+..+...+...|++++|+..+++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44456667777888888888877664 355677777777888888888888887765542 233322221111 112
Q ss_pred CCcHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHcCChHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEP-QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG-DANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a 354 (445)
.++...|...+++..+. .| +...+..+..++...|++++|...|+++++....+ +...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12223467778877754 34 47778888888999999999999999888765222 356788888899999999999
Q ss_pred HHHHHHHHH
Q 047840 355 NRVWRKLAE 363 (445)
Q Consensus 355 ~~~~~~~~~ 363 (445)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887764
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.96 E-value=1.5e-08 Score=76.26 Aligned_cols=119 Identities=8% Similarity=-0.111 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 4455666666777777777777777777642 22356667777777777888888888888777655 45677788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
.++...|++++|.+.++++.+..|.+...+..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888877778778777776653
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=1.7e-08 Score=75.65 Aligned_cols=120 Identities=7% Similarity=-0.060 Sum_probs=99.4
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3456666777788888888898888888764 23456777888888889999999999999887765 56688888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCCh
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWD 385 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 385 (445)
..+...|++++|...++++.+..|.++..+..++.++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998888888999998888875
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=9.9e-08 Score=82.98 Aligned_cols=167 Identities=10% Similarity=-0.032 Sum_probs=123.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC--CCCC--hh
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT-E----TTFVAVLTTCTHAKMVRDGLNLFENMSAVYG--VEPQ--LE 301 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~ 301 (445)
.+...+..+...|++++|++.+.+..+...... . ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566778889999999999988877532211 1 2233455567788999999999998874311 1111 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhc---CC-CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------Cc
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMG---GL-GGG--DANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DF 369 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 369 (445)
+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|+..++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788889999999999999999998762 21 111 1258889999999999999999999999875432 15
Q ss_pred hhHHHHHHHHHHcCChHHH-HHHHHHHHh
Q 047840 370 STHVLSYNIYKEAGWDMEA-NKVRKLISE 397 (445)
Q Consensus 370 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 397 (445)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788899999999999999 777776653
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=7.9e-08 Score=79.15 Aligned_cols=128 Identities=13% Similarity=-0.041 Sum_probs=75.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 314 (445)
+...+...|++++|+..|++. +.|+...+..+...+...|++++|...++..... .+.+...+..+..+|...|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 344444555555555555444 2334455555555555555555555555555543 1223445555555666666
Q ss_pred ChHHHHHHHHHHhcCC--------------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 315 MVEEAEKFIEEKMGGL--------------GGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~--------------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
++++|...|++..+.. ..| ....+..+..++...|++++|.+.|+++++..|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666555432 111 23677888888888888888888888888888864
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.92 E-value=2.2e-08 Score=76.57 Aligned_cols=98 Identities=16% Similarity=-0.052 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+.+.|++++|...|++++... +.+...|..+..++...|++++|+..|+++++.+|.++.++..++.+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3445566777888888899988888887766 667888888888888889999999999999888888888888888889
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|.+.+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999998888887654
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.91 E-value=2.2e-08 Score=88.84 Aligned_cols=95 Identities=6% Similarity=-0.059 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++..|.+..++..++.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999998876 678899999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHH-HHHHH
Q 047840 380 KEAGWDMEANK-VRKLI 395 (445)
Q Consensus 380 ~~~g~~~~A~~-~~~~m 395 (445)
.+.|++++|.. .++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999844 55555
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.90 E-value=2.5e-08 Score=74.51 Aligned_cols=98 Identities=10% Similarity=-0.154 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..++++++.+|.++.++..++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455666677777888888888888777665 556777788888888888888888888888888888777888888888
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888877777653
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.85 E-value=4.3e-08 Score=71.13 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=84.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CchhHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT--DFSTHVLSY 376 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 376 (445)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++..|. +...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 35566777788888899999999988887765 567788888888899999999999999999998888 888888999
Q ss_pred HHHHHc-CChHHHHHHHHHHHhcCC
Q 047840 377 NIYKEA-GWDMEANKVRKLISETGM 400 (445)
Q Consensus 377 ~~~~~~-g~~~~A~~~~~~m~~~~~ 400 (445)
.++... |++++|.+.+++..+..-
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999988876543
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.84 E-value=8.1e-08 Score=72.79 Aligned_cols=100 Identities=12% Similarity=-0.109 Sum_probs=76.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
.+...+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...++++++..|.++.++..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 356667777777777888888888887776655 5567777777778888888888888888888888877777888888
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q 047840 378 IYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888877777653
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=1.5e-08 Score=78.16 Aligned_cols=108 Identities=6% Similarity=-0.122 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++.+... +.++..+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 3445666777888999999999999998864 23467788888999999999999999999988776 66788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.++...|++++|...|+++++..|.++....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999999999999999999999988765533
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.82 E-value=3.7e-08 Score=72.92 Aligned_cols=96 Identities=9% Similarity=-0.111 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
.+..+...+.+.|++++|...|++.++.. +.+...|..+..++...|++++|+..|+++++.+|.++.++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566778889999999999999998776 66889999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 047840 382 AGWDMEANKVRKLISET 398 (445)
Q Consensus 382 ~g~~~~A~~~~~~m~~~ 398 (445)
.|++++|...+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999988653
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.81 E-value=6.1e-08 Score=76.19 Aligned_cols=111 Identities=11% Similarity=-0.022 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...|++..+. .+.+...|..+..+|...|++++|+..|++.++.. +.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567778888899999999999999999875 23467788889999999999999999999998776 66788999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
.++...|++++|...|+++++..|.+...+....
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999998877555443
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.80 E-value=4.8e-07 Score=78.64 Aligned_cols=160 Identities=11% Similarity=-0.034 Sum_probs=120.1
Q ss_pred HHHHHHccCChHHHHHHhhcCCCC---Chh------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 047840 204 VVDMYSKCGHVHSALSVFEGISNK---DAG------AWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PT----ETTFVA 269 (445)
Q Consensus 204 l~~~~~~~g~~~~a~~~~~~~~~~---~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 269 (445)
.+..+...|++++|..++++.... +.. .+..+...+...+++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778889999999998876542 111 2334666777788999999999999874222 22 236888
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhC----CCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCC-HHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYG----VEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGD-ANVWG 339 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 339 (445)
+...|...|++++|...++++.+... ..+. ..++..+..+|.+.|++++|...+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999999885221 1111 346788889999999999999999887542 22222 67899
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHH
Q 047840 340 ALLSACRIYGK-IEVGNRVWRKLAE 363 (445)
Q Consensus 340 ~l~~~~~~~g~-~~~a~~~~~~~~~ 363 (445)
.+..++...|+ +++|.+.+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999999887
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=6.3e-08 Score=74.55 Aligned_cols=102 Identities=3% Similarity=-0.120 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|...|++++|...|++..+.. +.++..|..+..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 45666666777888888888888888764 13356777788888888888888888888887766 5567788888888
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCc
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~ 369 (445)
|...|++++|+..|+++++..|+++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888888888888888888887643
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=5.9e-08 Score=77.33 Aligned_cols=129 Identities=9% Similarity=0.155 Sum_probs=104.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH-HHhcCCh--
Q 047840 240 AMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL-LARAGMV-- 316 (445)
Q Consensus 240 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 316 (445)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+++.... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999999887763 3467788888889999999999999999998652 3456777788888 7789998
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 317 EEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
++|...++++++.. +.+...+..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999988776 56788899999999999999999999999999999876443
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.80 E-value=6.3e-08 Score=72.37 Aligned_cols=97 Identities=8% Similarity=-0.107 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc-------hhHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF-------STHV 373 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~ 373 (445)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.++++++..|.+. .++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677888888999999999999888766 66788888899999999999999999999988777643 3566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 374 LSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++.++...|++++|.+.+++..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7788888899999999988877653
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=1.1e-07 Score=71.36 Aligned_cols=100 Identities=9% Similarity=-0.081 Sum_probs=91.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++++..|.++.++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 346677888899999999999999999998776 5688999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHhc
Q 047840 378 IYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 378 ~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.79 E-value=1.4e-07 Score=69.14 Aligned_cols=109 Identities=9% Similarity=-0.019 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSAC 345 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (445)
.+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444444555555555555555555542 12234455555555555666666666665555443 33455555566666
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 346 RIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 346 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
...|++++|.+.++++.+..|.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66666666666666666666655544444443
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.8e-07 Score=78.98 Aligned_cols=138 Identities=12% Similarity=-0.001 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHH
Q 047840 233 NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ--LEHYACVVDLL 310 (445)
Q Consensus 233 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 310 (445)
..+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 345566677778888887777765543 44334444445677888888888888755431 1 111 23566778888
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGD--ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
...|++++|+..|++.......|. ...+.....++.+.|+.++|...|+++...+|. ......|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 899999999999998875443243 446777788889999999999999999999987 5555444
No 145
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.2e-07 Score=70.78 Aligned_cols=113 Identities=8% Similarity=-0.085 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
...+......+.+.|++++|...|++..+. .+.+...|..+..+|...|++++|...+++.++.. +.+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345666677788889999999999888864 23457788888899999999999999999988776 667888999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhC------CCCchhHHHHHHHH
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMG------ITDFSTHVLSYNIY 379 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~ 379 (445)
++...|++++|...|+++++.. |.+..+...+..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 9999999999999999999988 77666666665544
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.78 E-value=1e-07 Score=77.48 Aligned_cols=168 Identities=5% Similarity=-0.066 Sum_probs=104.3
Q ss_pred HHccCChHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHH
Q 047840 208 YSKCGHVHSALSVFEGISNK---DAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGL 284 (445)
Q Consensus 208 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 284 (445)
....|+++++.+.++..... ....+..+...+...|++++|+..|++..... |+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------------
Confidence 33445555555555432221 23345555666666666777766666665532 111100000
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 285 NLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
....-.. ......+..+..+|...|++++|...+++.++.. +.+...+..+..++...|++++|...|+++++.
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0000000 0013567788888999999999999999988776 678889999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHH-HHHHHHHh
Q 047840 365 GITDFSTHVLSYNIYKEAGWDMEAN-KVRKLISE 397 (445)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~ 397 (445)
.|.+..++..+..++...|+..++. ..+..|-.
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999988888877 45555543
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.78 E-value=1.4e-07 Score=69.01 Aligned_cols=99 Identities=9% Similarity=-0.100 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..|.++..+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34567778888999999999999999998766 56888999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 047840 379 YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999988764
No 148
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=9.2e-08 Score=73.11 Aligned_cols=108 Identities=8% Similarity=-0.029 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA 344 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (445)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|...|++.+... +.++..+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 34555666788889999999999988864 23467778888889999999999999999988776 6677888899999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 345 CRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 345 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
+...|++++|...|+++++..|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999999998877655443
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.6e-07 Score=69.53 Aligned_cols=98 Identities=17% Similarity=0.115 Sum_probs=90.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+..|.++.++..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 5677888899999999999999999998765 567889999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhc
Q 047840 380 KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~ 398 (445)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998765
No 150
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=2.2e-07 Score=75.66 Aligned_cols=156 Identities=8% Similarity=-0.048 Sum_probs=86.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhC---CCC-ChhHHHHHHHHHHhcCCh
Q 047840 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYG---VEP-QLEHYACVVDLLARAGMV 316 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~ 316 (445)
..|++++|.+.++.+... .......+..+...+...|++++|...+++...... ..| ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345666666643333221 112344555555566666666666666665554211 111 234455666667777777
Q ss_pred HHHHHHHHHHhcC--CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CC----chhHHHHHHHHHHcCC
Q 047840 317 EEAEKFIEEKMGG--LGGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGI--TD----FSTHVLSYNIYKEAGW 384 (445)
Q Consensus 317 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~ 384 (445)
++|...+++..+. ..+.+ ...+..+...+...|++++|...+++.++..+ .+ ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665432 11111 34466667777777777777777777765322 11 1234567777777777
Q ss_pred hHHHHHHHHHHHh
Q 047840 385 DMEANKVRKLISE 397 (445)
Q Consensus 385 ~~~A~~~~~~m~~ 397 (445)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=3.3e-07 Score=70.27 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVW 338 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 338 (445)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++..+.. +.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 444555566666666677777776666663 2444 4566666777777777777777777766554 4466777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
..+..++...|++++|...|+++++..|.+..++..+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777788888888888888877777766665555443
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=2e-07 Score=73.16 Aligned_cols=95 Identities=5% Similarity=-0.181 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 301 EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 301 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
..+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++.+|.++.++..++.+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334444445555555555555555544433 3344455555555555555555555555555555555555555555555
Q ss_pred HcCChHHHHHHHHHHH
Q 047840 381 EAGWDMEANKVRKLIS 396 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m~ 396 (445)
..|++++|...+++..
T Consensus 91 ~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGI 106 (164)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 5555555555555444
No 153
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=4e-07 Score=71.37 Aligned_cols=130 Identities=6% Similarity=-0.075 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHH
Q 047840 230 GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDL 309 (445)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (445)
..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 456777788889999999999999988763 336778888888899999999999999999864 24457788888999
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHHHcCChHHHHHHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGAL--LSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
+...|++++|...+++..+.. +.+...+..+ +..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999988765 4566666444 4447788999999999888765
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.74 E-value=8.3e-06 Score=71.28 Aligned_cols=233 Identities=9% Similarity=0.024 Sum_probs=137.6
Q ss_pred HHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHcc-C-C
Q 047840 137 AYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKC-G-H 213 (445)
Q Consensus 137 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 213 (445)
...+.+..++|++++++++..+ +-+...|+.--..+...+ ++++++.+++.+.... +.+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344555667888888887753 224556666666666667 4888888888887765 45666666665555555 5 7
Q ss_pred hHHHHHHhhcCCCC---ChhhHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc---
Q 047840 214 VHSALSVFEGISNK---DAGAWNAMISGVAMNGDAK--------KSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM--- 279 (445)
Q Consensus 214 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--- 279 (445)
+++++.+++++.+. |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 77888888777664 4445555444444444444 778888888776543 66777777666666654
Q ss_pred ----HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHHHhcCC-----
Q 047840 280 ----VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMV--------------------EEAEKFIEEKMGGL----- 330 (445)
Q Consensus 280 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----- 330 (445)
++++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++....
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 56777777776653 234556666655555555543 22333333332221
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HhCCCCchhHHH
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRKLA-EMGITDFSTHVL 374 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~ 374 (445)
-.++...+..++..|...|+.++|.++++.+. +.+|.....|..
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 02455666666666666666666666666665 355554444433
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=1e-06 Score=76.55 Aligned_cols=164 Identities=10% Similarity=-0.034 Sum_probs=117.4
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCC---CCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISN---KDA------GAWNAMISGVAMNGDAKKSLELFDRMVKSGT---QPT--ET 265 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~ 265 (445)
.+...+..+...|++++|...+.+..+ ... ..+..+...+...|++++|+..+++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888777764322 111 1234455667788899999999998875321 122 44
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCC----CCC-CH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKMGGL----GGG-DA 335 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~ 335 (445)
+++.+...|...|++++|...++++.......|+ ..++..+..+|...|++++|...+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999999999988732111222 2577888899999999999999999875432 111 26
Q ss_pred HHHHHHHHHHHHcCChHHH-HHHHHHHHH
Q 047840 336 NVWGALLSACRIYGKIEVG-NRVWRKLAE 363 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 363 (445)
.+|..+...+...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7889999999999999999 788888876
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=2.4e-07 Score=70.13 Aligned_cols=115 Identities=5% Similarity=-0.154 Sum_probs=92.2
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHH
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGAL 341 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 341 (445)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++.++.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45677788888888889999999999888864 23456778888889999999999999999988766 5678889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC-----CchhHHHHHHHH
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGIT-----DFSTHVLSYNIY 379 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~ 379 (445)
..++...|++++|...|+++++..|+ +..+...+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776 444444444443
No 157
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.71 E-value=1.4e-06 Score=76.22 Aligned_cols=217 Identities=10% Similarity=0.047 Sum_probs=160.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccC-ChHHHHHHhhcCCCC---ChhhHHHHHHHHHhc-C-ChHHHH
Q 047840 176 LGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG-HVHSALSVFEGISNK---DAGAWNAMISGVAMN-G-DAKKSL 249 (445)
Q Consensus 176 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~ 249 (445)
.+..++|+.+++.++..+ +-+..+|+.--.++...| .+++++.+++.+... +..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344567899999999886 556777887777777788 599999999987653 566777777666666 6 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHH--------HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC------
Q 047840 250 ELFDRMVKSGTQPTETTFVAVLTTCTHAKMVR--------DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM------ 315 (445)
Q Consensus 250 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 315 (445)
++++++.+...+ |...|+.-...+.+.+.++ ++++.++++.+. -+-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 999999886433 7777776665555555555 899999999875 24567788887777777776
Q ss_pred -hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHhC------CCC
Q 047840 316 -VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI--------------------EVGNRVWRKLAEMG------ITD 368 (445)
Q Consensus 316 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~~ 368 (445)
++++++.+++++... +-|...|+.+-..+.+.|+. ....+...++.... +..
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 689999999988777 77899999888888777764 23333333333332 456
Q ss_pred chhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 369 FSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 369 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+...++++|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 67788999999999999999999999863
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=3.3e-08 Score=85.37 Aligned_cols=193 Identities=6% Similarity=-0.066 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhc
Q 047840 163 ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMN 242 (445)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (445)
...+..+...+...|++++|...|+++.+.. +.+.. .|..+..+|...
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~-------------------------------~~~~la~~~~~~ 51 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAV-------------------------------YYTNRALCYLKM 51 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHH-------------------------------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHH-------------------------------HHHHHHHHHHHh
Confidence 3444555555555555555555555555542 22333 444444555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-EHYACVVDLLARAGMVEEAEK 321 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 321 (445)
|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+. .|+. ..+...+....+. .++..
T Consensus 52 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~---~~~~~ 124 (281)
T 2c2l_A 52 QQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRI---AKKKR 124 (281)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHH---HHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHH---HHHHH
Confidence 55555555555554432 123445555555556666666666666555533 1110 0111111111111 11111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc-CChHHHHHHHHHHHh
Q 047840 322 FIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA-GWDMEANKVRKLISE 397 (445)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 397 (445)
.. .......+.+......+... ..|+.++|++.++++.+.+|++......+...+.+. +.+++|.++|....+
T Consensus 125 ~~-~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 125 WN-SIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HH-HHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HH-HHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11 11112334444444444332 257788888888888888887666666666666665 667888888887754
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=3.5e-07 Score=68.26 Aligned_cols=99 Identities=11% Similarity=-0.082 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..|.++..+..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 45667788889999999999999999988765 56788999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhc
Q 047840 379 YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...|++++|...+++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999998765
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.66 E-value=3.1e-07 Score=74.75 Aligned_cols=156 Identities=11% Similarity=0.007 Sum_probs=106.0
Q ss_pred HccCChHHHHH---HhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhcCCcH
Q 047840 209 SKCGHVHSALS---VFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKS----GTQP-TETTFVAVLTTCTHAKMV 280 (445)
Q Consensus 209 ~~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~ 280 (445)
...|++++|.+ .+..-......++..+...+...|++++|...+++.... +..| ...++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566777776 544433334556777777788888888888888776552 1122 335667777788889999
Q ss_pred HHHHHHHHHhHHhhCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHHHcC
Q 047840 281 RDGLNLFENMSAVYGVEP-Q----LEHYACVVDLLARAGMVEEAEKFIEEKMGG----LGGGD--ANVWGALLSACRIYG 349 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g 349 (445)
++|...+++......-.+ + ...+..+...+...|++++|...+++..+. + .+. ..++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCc
Confidence 999998888775422122 2 345677788888999999999998887532 2 111 234678888899999
Q ss_pred ChHHHHHHHHHHHHhC
Q 047840 350 KIEVGNRVWRKLAEMG 365 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~ 365 (445)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988743
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.65 E-value=4.1e-07 Score=84.28 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++..|.+..++..++.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4678888999999999999999999998876 678899999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHH-HHHHHH
Q 047840 380 KEAGWDMEANK-VRKLIS 396 (445)
Q Consensus 380 ~~~g~~~~A~~-~~~~m~ 396 (445)
.+.|++++|.+ .++.|-
T Consensus 396 ~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999998875 555553
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=7.2e-07 Score=68.34 Aligned_cols=99 Identities=11% Similarity=-0.076 Sum_probs=89.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|+..++++++..|.++..+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 356778888899999999999999999998654 55 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 374 LSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 374 ~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.++.++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999999988764
No 163
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=2.2e-06 Score=72.43 Aligned_cols=182 Identities=7% Similarity=-0.043 Sum_probs=120.0
Q ss_pred hcCCchHHHHHHHHHHhcCCCCC-cccHHHH-------HHHhhhcCCchhHHHHHHHHHHHhcCCCCh------------
Q 047840 7 QANFPKLSVFCYLDMLDMGFEPN-NYTFPPL-------IKACVILGPLENFGMFVHAHVVKFGFGEDP------------ 66 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------ 66 (445)
+.+++..|.+.|.+..+.. |+ ...|..+ ...+...++.. .+...+... .++.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~-~a~~~~~~~--l~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSR-RNFGQLSGS--VQISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTG-GGTTHHHHT--TTCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHH-HHHHHHHHH--hcCChhhhhhhhccCCccc
Confidence 5789999999999998854 54 3456555 23333333333 233232222 2222221
Q ss_pred ----------hhHHHHHHHHHhcCCHHHHHHHhccCCC--CChhhHHHHHHHHHcCCChHHHHHHhccCCCC-C----hh
Q 047840 67 ----------FVVSSLLEFYSLVHKMGTARALFDKSPD--RDVVTWTTMVDGYGKMGDFENARELFEKMPER-N----AV 129 (445)
Q Consensus 67 ----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~ 129 (445)
...-.+...+...|++++|.++|+.... |+......+...+.+.+++++|+..|+..... + ..
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233456677788899999999888764 33235555666778888888888888866542 2 23
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 047840 130 SWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPN--ESGLVSVLTACAHLGAITQGLWVHSYAKRYH 193 (445)
Q Consensus 130 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (445)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 567778888888888888888888775433243 3456667777888888888888888888774
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.63 E-value=3.6e-07 Score=68.23 Aligned_cols=95 Identities=9% Similarity=-0.102 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------chhHHH
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD-------FSTHVL 374 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~ 374 (445)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+..|.+ +.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444455555555555555555554433 3344555555555555555555555555555544433 444555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHh
Q 047840 375 SYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 375 l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
++.++...|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.60 E-value=6.1e-07 Score=67.00 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=46.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHH
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDA---NVWGALLSACRIYGKIEVGNRVWRKLAEMGITD---FSTHVLSYNIYK 380 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 380 (445)
...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555554432 1222 344445555555555555555555555555554 444555555555
Q ss_pred HcCChHHHHHHHHHHHh
Q 047840 381 EAGWDMEANKVRKLISE 397 (445)
Q Consensus 381 ~~g~~~~A~~~~~~m~~ 397 (445)
..|++++|...++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=2.3e-07 Score=86.39 Aligned_cols=121 Identities=8% Similarity=-0.077 Sum_probs=101.5
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG 349 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 349 (445)
+...+.+.|++++|...++++.+. .+.+...+..+..+|.+.|++++|++.+++.++.. +.+...+..+..+|...|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 334567789999999999999865 23357888899999999999999999999998876 667889999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHH--HHHcCChHHHHHHHH
Q 047840 350 KIEVGNRVWRKLAEMGITDFSTHVLSYNI--YKEAGWDMEANKVRK 393 (445)
Q Consensus 350 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 393 (445)
++++|++.++++++..|.+..++..++.+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999988888888887 888899999999887
No 167
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.59 E-value=5e-07 Score=65.33 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG--DANVWGALL 342 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 342 (445)
..+..+...+...|++++|...++++.+. .+.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 44555666667777777777777777653 13345666777777777888888888887777654 44 577777778
Q ss_pred HHHHHc-CChHHHHHHHHHHHHhCCCCc
Q 047840 343 SACRIY-GKIEVGNRVWRKLAEMGITDF 369 (445)
Q Consensus 343 ~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 369 (445)
.++... |++++|.+.++++....|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888888888888887777643
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.59 E-value=2e-06 Score=64.06 Aligned_cols=104 Identities=13% Similarity=-0.014 Sum_probs=78.3
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC---HHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-L---EHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGD---ANVWGAL 341 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 341 (445)
.+...+...|++++|...|+.+... .|+ . ..+..+..++...|++++|...|+++.+.. +.+ ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 3445566778888888888888764 233 2 366677788888899999999888887654 334 6678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 342 LSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 342 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
..++...|++++|...|+++++..|+++.......
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 88899999999999999999998888765544443
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=2.9e-05 Score=67.50 Aligned_cols=194 Identities=8% Similarity=-0.053 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccC--ChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCC-hHHHHHHH
Q 047840 179 ITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCG--HVHSALSVFEGISN---KDAGAWNAMISGVAMNGD-AKKSLELF 252 (445)
Q Consensus 179 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 252 (445)
+++++.+++.+.... |-+..+|+.-.-++.+.| .++++..+++++.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455556666665543 344555554444444444 35566665555543 244455554445555555 46666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhcC--------------CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc-----
Q 047840 253 DRMVKSGTQPTETTFVAVLTTCTHA--------------KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA----- 313 (445)
Q Consensus 253 ~~m~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 313 (445)
+++.+..+. |...|+.....+.+. +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccc
Confidence 666665432 444554443333222 3355566666665543 133344454333333333
Q ss_pred ------CChHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHHcCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 047840 314 ------GMVEEAEKFIEEKMGGLGGGDANVWGALLSA---CRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYN 377 (445)
Q Consensus 314 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 377 (445)
+.++++++.++++.+.. +.+...+..++.. ....|..+++...+.++++.+|....-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 23556666666665443 2222222222111 112345556666666666666665555554433
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=1.3e-05 Score=69.77 Aligned_cols=181 Identities=10% Similarity=0.070 Sum_probs=134.1
Q ss_pred hHHHHHHhhcCCC---CChhhHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc-HHHHHHHH
Q 047840 214 VHSALSVFEGISN---KDAGAWNAMISGVAMNG--DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM-VRDGLNLF 287 (445)
Q Consensus 214 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 287 (445)
++++..+++.+.. .+..+|+.-...+...+ .+++++.+++++.+...+ |...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4666777766543 46678887777777777 489999999999987544 77788777777777787 58999999
Q ss_pred HHhHHhhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc-----
Q 047840 288 ENMSAVYGVEPQLEHYACVVDLLARA--------------GMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY----- 348 (445)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 348 (445)
+.+... -+.|...|+.....+.+. +.++++++.+...+... |-|...|+.+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 999875 245677777666655554 45788999999988777 77888888776666554
Q ss_pred ------CChHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHcCChHHHHHHHHHHHhc
Q 047840 349 ------GKIEVGNRVWRKLAEMGITDFSTHVLSYNIY---KEAGWDMEANKVRKLISET 398 (445)
Q Consensus 349 ------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~ 398 (445)
+.++++++.++++++..|++..++..++... ...|..+++...+.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3578999999999999998865554444322 2357788888888888763
No 171
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.58 E-value=4.6e-07 Score=70.90 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 336 NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 336 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..|..+..+|...|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 34555555555555555555555555555555555555555555555555555555555443
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.58 E-value=1.3e-06 Score=77.38 Aligned_cols=149 Identities=7% Similarity=-0.018 Sum_probs=117.5
Q ss_pred CChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHh
Q 047840 212 GHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--------------ETTFVAVLTTC 274 (445)
Q Consensus 212 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~ 274 (445)
+++++|...|+.... .+...+..+...+.+.|++++|+..|++......... ...|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544444332 1455777888888999999999999999887643321 47888899999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
.+.|++++|...++++.+. .+.+...+..+..+|...|++++|...|++.++.. +.+...+..+..++...|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 23467888899999999999999999999998776 66788999999999999999888
Q ss_pred -HHHHHHHHH
Q 047840 355 -NRVWRKLAE 363 (445)
Q Consensus 355 -~~~~~~~~~ 363 (445)
...+++|..
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 456676654
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.58 E-value=1.1e-07 Score=69.88 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=44.7
Q ss_pred cCChHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHH
Q 047840 313 AGMVEEAEKFIEEKMGGL--GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANK 390 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 390 (445)
.|++++|+..|++.++.+ -+.+...+..+..++...|++++|+..|+++++..|.++.++..++.++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555432 122334455555555555666666666666655555555555555555666666666655
Q ss_pred HHHHHHh
Q 047840 391 VRKLISE 397 (445)
Q Consensus 391 ~~~~m~~ 397 (445)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 174
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.57 E-value=7.6e-07 Score=67.86 Aligned_cols=96 Identities=16% Similarity=-0.076 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCC------CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGG------GD-----ANVWGALLSACRIYGKIEVGNRVWRKLAEM------- 364 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 364 (445)
+......+...|++++|+..|++.++.... .+ ...|..+..++...|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445555666666666666665543311 02 237888888889999999999999999988
Q ss_pred CCCCchhH----HHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 365 GITDFSTH----VLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 365 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+|++...| ...+.++...|++++|+..|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 89888888 88999999999999999988887653
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.57 E-value=5.2e-07 Score=67.35 Aligned_cols=113 Identities=8% Similarity=-0.025 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC--CCC----HHHH
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLG--GGD----ANVW 338 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~ 338 (445)
..+..+...+...|++++|...++..... .+.+...+..+...+...|++++|...+++..+... .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 34555556666667777777777776653 133455666667777777777777777777655431 112 5667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 339 GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 339 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
..+..++...|++++|.+.|+++.+..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 7777778888888888888888887776 4555555544433
No 176
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.55 E-value=1.8e-07 Score=73.24 Aligned_cols=80 Identities=13% Similarity=-0.033 Sum_probs=68.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCc-hhHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDF-STHVLSYN 377 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~ 377 (445)
+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+++++..|.++ .+...+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35678888999999999999999999998876 67889999999999999999999999999999999877 44444444
Q ss_pred HH
Q 047840 378 IY 379 (445)
Q Consensus 378 ~~ 379 (445)
+.
T Consensus 141 ~~ 142 (162)
T 3rkv_A 141 VT 142 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=2.6e-07 Score=75.05 Aligned_cols=165 Identities=6% Similarity=-0.032 Sum_probs=80.4
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCC
Q 047840 168 SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN---KDAGAWNAMISGVAMNGD 244 (445)
Q Consensus 168 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 244 (445)
..+......|+++.+...++...... ......+..+...+.+.|++++|...|++... .+.......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------- 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI--------- 78 (198)
T ss_dssp -------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH---------
T ss_pred chhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh---------
Confidence 34445556677777776665433221 22345677788899999999999999987643 122000000
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 047840 245 AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIE 324 (445)
Q Consensus 245 ~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 324 (445)
...- -.. .....+..+..++...|++++|...++..... .+.+...+..+..+|...|++++|...|+
T Consensus 79 ~~~~---~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 79 LLDK---KKN-------IEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHH---HHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHH---HHH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000 000 01234444555555566666666666665543 12334555556666666666666666666
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047840 325 EKMGGLGGGDANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
+..+.. +.+...+..+..++...++.+++.
T Consensus 147 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 147 KAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 655444 344555555555555555444444
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.52 E-value=1.4e-06 Score=78.13 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNI 378 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 378 (445)
+...|..+..+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|+++++..|.+..++..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888999999999999999999999876 56789999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHH
Q 047840 379 YKEAGWDMEANK 390 (445)
Q Consensus 379 ~~~~g~~~~A~~ 390 (445)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998888776
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.52 E-value=6.7e-07 Score=66.01 Aligned_cols=99 Identities=10% Similarity=-0.141 Sum_probs=69.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
+..+...+.+.|++++|...++.+.+. -+.+...|..+..++...|++++|+..|++.++.. +.+...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334455666778888888888877754 13356677777777888888888888888877665 556777788888888
Q ss_pred HcCChHHHHHHHHHHHHhCCCC
Q 047840 347 IYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 347 ~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
..|++++|+..++++++..|.+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 8888888888888888777764
No 180
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.52 E-value=1.1e-06 Score=75.64 Aligned_cols=108 Identities=5% Similarity=-0.156 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 047840 263 TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALL 342 (445)
Q Consensus 263 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 342 (445)
+...+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|...+++.++.. +.+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567778888899999999999999999865 13367788889999999999999999999998776 66788899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
.++...|++++|...|+++.+..|+++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 9999999999999999999998887544333
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.49 E-value=1.9e-07 Score=68.53 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=73.7
Q ss_pred cCCcHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHH
Q 047840 276 HAKMVRDGLNLFENMSAVYG--VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEV 353 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 353 (445)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|...|++.++.. +.+..++..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHH
Confidence 357788888888888743 1 12345677788888999999999999999988776 6678889999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhH
Q 047840 354 GNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 354 a~~~~~~~~~~~~~~~~~~ 372 (445)
|+..++++++..|.++...
T Consensus 80 A~~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhCCCcHHHH
Confidence 9999999999988876544
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.49 E-value=5.2e-07 Score=80.01 Aligned_cols=149 Identities=9% Similarity=-0.036 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 047840 229 AGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVD 308 (445)
Q Consensus 229 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 308 (445)
...+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345666777777888888888888887764 344331 22334444433222 1 136778888
Q ss_pred HHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHcCChHH
Q 047840 309 LLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY-KEAGWDME 387 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 387 (445)
+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|+++++..|.+..++..+..+. ...+..++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766 567889999999999999999999999999999999888888887773 44566777
Q ss_pred HHHHHHHHHhc
Q 047840 388 ANKVRKLISET 398 (445)
Q Consensus 388 A~~~~~~m~~~ 398 (445)
+...+++|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 77888877543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.44 E-value=2.2e-06 Score=66.60 Aligned_cols=133 Identities=14% Similarity=-0.015 Sum_probs=89.5
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCC-CCC----HH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGGLG-GGD----AN 336 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 336 (445)
++..+...+...|++++|...+++......-.++ ...+..+...+...|++++|...+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666777777666665543111111 13566677778888888888888877654210 111 45
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 337 VWGALLSACRIYGKIEVGNRVWRKLAEMGIT------DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 337 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++..+...+...|++++|.+.++++++..+. ...++..++.++...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888899999999999888874321 2446778888999999999999988877643
No 184
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.1e-05 Score=74.18 Aligned_cols=213 Identities=6% Similarity=-0.166 Sum_probs=109.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 047840 169 VLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 169 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 248 (445)
-...+.+.|++++|.+.|..+.+....... ............+..+ .++..+...|...|++++|
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~--------------~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSS-AAAGASVDDKRRNEQE--------------TSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSS-BSSSSSBCSHHHHHHH--------------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccch-hHHHHHHHHHHhhhHH--------------HHHHHHHHHHHHCCCHHHH
Confidence 345567778888888888887775422111 0000000000000000 1234556666666666666
Q ss_pred HHHHHHHHHc-CCCCCH----HHHHHHHHHhhcCCcHHHHHHHHHHhHHhh---CCCCC-hhHHHHHHHHHHhcCChHHH
Q 047840 249 LELFDRMVKS-GTQPTE----TTFVAVLTTCTHAKMVRDGLNLFENMSAVY---GVEPQ-LEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 249 ~~~~~~m~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A 319 (445)
.+.+.++... +..++. .+.+.+-..+...|+++.+..+++...... +..+. ..++..+...|...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 6666655432 111111 112222333445566777766666554321 11111 34555666777777777777
Q ss_pred HHHHHHHhcC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CC----chhHHHHHHHHHHcCChHH
Q 047840 320 EKFIEEKMGG----LGGG-DANVWGALLSACRIYGKIEVGNRVWRKLAEMGI---TD----FSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 320 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~ 387 (445)
..+++++... +-.+ ...++..++..|...|++++|..+++++....+ .+ ...+..++..+...|++++
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~ 234 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT 234 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence 7776665322 1011 134566667777777777777777777665322 11 1234455566666677777
Q ss_pred HHHHHHHHH
Q 047840 388 ANKVRKLIS 396 (445)
Q Consensus 388 A~~~~~~m~ 396 (445)
|...+....
T Consensus 235 A~~~~~~a~ 243 (434)
T 4b4t_Q 235 AFSYFFESF 243 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555443
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.6e-06 Score=66.06 Aligned_cols=103 Identities=12% Similarity=-0.020 Sum_probs=77.0
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHHHhcC------
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-------------LEHYACVVDLLARAGMVEEAEKFIEEKMGG------ 329 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 329 (445)
.....+.+.|++++|...|++..+. .|+ ...|..+..++.+.|++++|+..+++.++.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344455556666666666665543 222 237888888899999999999999888765
Q ss_pred -CCCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHH
Q 047840 330 -LGGGDANVW----GALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLS 375 (445)
Q Consensus 330 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 375 (445)
. +.+...| .....++...|++++|+..|++++++.|.+......+
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5 4456788 9999999999999999999999999999876655443
No 186
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.37 E-value=4e-06 Score=57.94 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 047840 300 LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIY 379 (445)
Q Consensus 300 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (445)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+..|.++.++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5567778888889999999999999887765 567888899999999999999999999999999999888888888887
Q ss_pred HHcC
Q 047840 380 KEAG 383 (445)
Q Consensus 380 ~~~g 383 (445)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.37 E-value=3.1e-06 Score=61.67 Aligned_cols=79 Identities=8% Similarity=-0.114 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+|...|++..+.. +.+...+..+...+...|++++|+..|+++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555544 445566666666666666666666666666666666666666666666666666666666665544
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=2.9e-06 Score=78.97 Aligned_cols=115 Identities=7% Similarity=-0.067 Sum_probs=47.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 047840 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAE 320 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 320 (445)
+.|++++|++.|++..+.. +.+...+..+..++.+.|++++|...++++.+. -+.+...+..+..+|...|++++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444431 113444444444444555555555555544432 1222344444444555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHH--HHHcCChHHHHHHHH
Q 047840 321 KFIEEKMGGLGGGDANVWGALLSA--CRIYGKIEVGNRVWR 359 (445)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 359 (445)
+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555444332 2222233333333 444455555555544
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.1e-06 Score=63.60 Aligned_cols=94 Identities=11% Similarity=-0.059 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------chhH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD------FSTH 372 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 372 (445)
+...+..+...+...|++++|...|++.++.. +.+...+..+..++...|++++|++.++++++..|.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45667788888999999999999999988766 6678889999999999999999999999999999987 6667
Q ss_pred HHHHHHHHHcCChHHHHHHHH
Q 047840 373 VLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 373 ~~l~~~~~~~g~~~~A~~~~~ 393 (445)
..++.++...|++++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 777777777777666655443
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.8e-05 Score=72.75 Aligned_cols=193 Identities=9% Similarity=0.028 Sum_probs=110.6
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCc
Q 047840 135 MAAYSRISDFKEVLSLFRQMQEVGMKPNE----------------SGLVSVLTACAHLGAITQGLWVHSYAKRYHL-EKN 197 (445)
Q Consensus 135 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 197 (445)
...+.+.|++++|++.|....+....... ..+..+...|...|++++|..++..+.+.-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 56678899999999999999875422211 2366677788888888888888877665311 111
Q ss_pred h----hhhhHHHHHHHccCChHHHHHHhhcCCC-----C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--
Q 047840 198 V----ILATAVVDMYSKCGHVHSALSVFEGISN-----K----DAGAWNAMISGVAMNGDAKKSLELFDRMVKS--GT-- 260 (445)
Q Consensus 198 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~-- 260 (445)
. .+.+.+...+...|+++.|..++..... . -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1223333444455667777666654321 0 1234555666666777777777766665432 11
Q ss_pred CC-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 261 QP-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ-----LEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 261 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
.| ...++..++..|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1234555566666667777776666665532111111 1233444445555666666666666553
No 191
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=1.4e-05 Score=59.44 Aligned_cols=96 Identities=8% Similarity=0.025 Sum_probs=42.9
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC--CCCC----HHHHHHHH
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL--GGGD----ANVWGALL 342 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~ 342 (445)
.+...+.+.|++++|+..|++..+. .+.+...|..+..+|...|++++|++.+++.++.. ..++ ..+|..+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344444444444444444444432 01223344444444444444444444444443221 0011 12444555
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC
Q 047840 343 SACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
.++...|++++|++.|++.++..|
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCc
Confidence 555555666666666665555444
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.32 E-value=2e-05 Score=74.80 Aligned_cols=169 Identities=12% Similarity=0.007 Sum_probs=133.3
Q ss_pred HHHHHHhhcCCC---CChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC--c
Q 047840 215 HSALSVFEGISN---KDAGAWNAMISGVAMNGD----------AKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK--M 279 (445)
Q Consensus 215 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~ 279 (445)
++|.+.++++.. .+..+|+.--..+...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 455666555543 234455555555555555 88999999999887544 7788888888888888 7
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc----------
Q 047840 280 VRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG-MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY---------- 348 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 348 (445)
++++.+.++++.+. -+-+...|+.-.-++.+.| .++++++.++++++.. +-|...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccc
Confidence 79999999999975 2446778887777778888 8999999999999887 67889999988888764
Q ss_pred ----CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHH
Q 047840 349 ----GKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDME 387 (445)
Q Consensus 349 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 387 (445)
+.++++++.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457999999999999999999999999999999888554
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=6.4e-06 Score=63.87 Aligned_cols=136 Identities=7% Similarity=0.028 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCC----hh
Q 047840 231 AWNAMISGVAMNGDAKKSLELFDRMVKSGTQ-PT----ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQ----LE 301 (445)
Q Consensus 231 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 301 (445)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...++.......-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666777777888887777776543110 11 135666777788888888888888877653211112 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhcC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMGG----LGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
.+..+...+...|++++|...+++..+. +.+ ....++..+...+...|++++|.+.+++.++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5667778888999999999988876543 211 1235677888899999999999999999887543
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.27 E-value=7e-06 Score=75.99 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=102.4
Q ss_pred HhhcCCcHHHHHHHHHHhHHhhC--CCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCC-HHHHH
Q 047840 273 TCTHAKMVRDGLNLFENMSAVYG--VEP----QLEHYACVVDLLARAGMVEEAEKFIEEKMGG-----L-GGGD-ANVWG 339 (445)
Q Consensus 273 ~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~ 339 (445)
.+...|++++|..++++..+... +.| ...+++.|..+|...|++++|+.++++.++. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988776421 112 2567889999999999999999998876432 2 1233 35789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-----hCCCCchhH---HHHHHHHHHcCChHHHHHHHHHHHhcCCccCC
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAE-----MGITDFSTH---VLSYNIYKEAGWDMEANKVRKLISETGMKKKP 404 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 404 (445)
.|...|...|++++|+.+++++++ .||+++.+- ..+..++...|++++|+.++.++++...+..|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987 688876554 46778899999999999999999876544433
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.24 E-value=4.1e-06 Score=74.21 Aligned_cols=154 Identities=7% Similarity=-0.048 Sum_probs=82.6
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 277 (445)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788889999999999999987654222111 1223333444433221 13677788888999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHcCChHHHHH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSA-CRIYGKIEVGNR 356 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 356 (445)
|++++|...++..... .+.+...|..+..+|...|++++|...|++.++.. +.+...+..+... ....+..+++..
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999864 23457788889999999999999999999987665 4455566666655 334567788889
Q ss_pred HHHHHHHhCCCCc
Q 047840 357 VWRKLAEMGITDF 369 (445)
Q Consensus 357 ~~~~~~~~~~~~~ 369 (445)
.|+++....|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999998887654
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.22 E-value=1.1e-05 Score=57.00 Aligned_cols=66 Identities=14% Similarity=-0.044 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 332 GGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
+.+...+..+..++...|++++|+..|+++++.+|.++.++..++.+|...|++++|.+.+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345666777777777777777777777777777777777777777777777777777777776654
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.17 E-value=9.3e-06 Score=72.77 Aligned_cols=94 Identities=7% Similarity=-0.182 Sum_probs=74.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhc----------------CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMG----------------GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
..+...+.+.|++++|+..|++.++ .. +.+..+|..+..+|.+.|++++|+..++++++..|.
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 3344444555555555555554443 22 335678899999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 368 DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 368 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++.++..++.+|...|++++|.+.+++..+.
T Consensus 306 ~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 306 NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998765
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.15 E-value=3.6e-06 Score=64.02 Aligned_cols=87 Identities=9% Similarity=-0.102 Sum_probs=74.5
Q ss_pred HhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 047840 311 ARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKI----------EVGNRVWRKLAEMGITDFSTHVLSYNIYK 380 (445)
Q Consensus 311 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (445)
.+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|+++++++|++..+|..++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 35567788888888888777 67888888888888877664 59999999999999999999999999999
Q ss_pred HcC-----------ChHHHHHHHHHHHhc
Q 047840 381 EAG-----------WDMEANKVRKLISET 398 (445)
Q Consensus 381 ~~g-----------~~~~A~~~~~~m~~~ 398 (445)
..| ++++|.+.|++..+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 875 899999999998764
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.14 E-value=3.5e-05 Score=71.34 Aligned_cols=148 Identities=7% Similarity=-0.028 Sum_probs=111.0
Q ss_pred CChHHHHHHhhcCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHh
Q 047840 212 GHVHSALSVFEGISN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT--------------ETTFVAVLTTC 274 (445)
Q Consensus 212 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~l~~~~ 274 (445)
+++++|...|+.... .....|..+...+.+.|++++|+..|++..+...... ...|..+..+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344445444443332 1345677888899999999999999999887532211 57888889999
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047840 275 THAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVG 354 (445)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 354 (445)
.+.|++++|+..++++... .+.+...|..+..+|...|++++|...|+++++.. +.+...+..+..++...++.+++
T Consensus 328 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999975 23457888899999999999999999999998776 55677888899999888888777
Q ss_pred HH-HHHHHH
Q 047840 355 NR-VWRKLA 362 (445)
Q Consensus 355 ~~-~~~~~~ 362 (445)
.+ .+++|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 63 444444
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.07 E-value=3e-05 Score=56.31 Aligned_cols=83 Identities=11% Similarity=-0.011 Sum_probs=67.0
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 282 DGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 282 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
.|...|+...+. .+.+...+..+...|...|++++|...|++.++.. +.+...|..+..++...|++++|...|+++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777642 23457778888888999999999999999888766 567788889999999999999999999999
Q ss_pred HHhCCC
Q 047840 362 AEMGIT 367 (445)
Q Consensus 362 ~~~~~~ 367 (445)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887764
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=0.00018 Score=54.09 Aligned_cols=89 Identities=8% Similarity=-0.069 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
|...|...+.+++|.++|++..+.+ ++..+..|...|.. .+++++|.+.|+++.+.+ ++.++..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYA 105 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHC
Confidence 3333334444444444444444332 33444444444444 445555555555554432 33444455555555
Q ss_pred ----cCChHHHHHHHHHHHhcC
Q 047840 382 ----AGWDMEANKVRKLISETG 399 (445)
Q Consensus 382 ----~g~~~~A~~~~~~m~~~~ 399 (445)
.+++++|.+.+++..+.|
T Consensus 106 G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 106 GKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHHHCC
Confidence 455555555555544443
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.99 E-value=0.00016 Score=68.51 Aligned_cols=153 Identities=10% Similarity=0.027 Sum_probs=125.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc----------HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHH
Q 047840 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM----------VRDGLNLFENMSAVYGVEPQLEHYACVVDLLA 311 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (445)
....++|++.++++...+.. +...|+.--..+...|+ ++++...++.+.+. -+-+..+|..-.-++.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34567889999999987433 55566666556655666 89999999999975 2445777887777788
Q ss_pred hcC--ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHc------
Q 047840 312 RAG--MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYG-KIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEA------ 382 (445)
Q Consensus 312 ~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 382 (445)
+.| +++++++.++++.+.. +.|..+|+.-..++...| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 889 6799999999999888 789999999999999999 899999999999999999999999999888874
Q ss_pred --------CChHHHHHHHHHHHhc
Q 047840 383 --------GWDMEANKVRKLISET 398 (445)
Q Consensus 383 --------g~~~~A~~~~~~m~~~ 398 (445)
+.++++.+.+++....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhh
Confidence 5578888888777653
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.95 E-value=3.6e-05 Score=54.31 Aligned_cols=69 Identities=7% Similarity=-0.071 Sum_probs=57.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
.+...+..+..+|...|++++|+..|++.++.. +.+...|..+..+|...|++++|++.|+++++..|.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 356677888888889999999999999888766 556778888999999999999999999998886653
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.92 E-value=0.00013 Score=50.37 Aligned_cols=69 Identities=12% Similarity=-0.107 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 332 GGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
++|+..+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|...|+++.+..-
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888888888865554 68999999999999999999999999999999999999999999887543
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.90 E-value=0.00081 Score=50.51 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=93.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHh----cCChHH
Q 047840 243 GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLAR----AGMVEE 318 (445)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 318 (445)
+++++|+++|++..+.| .|+.. +...|...+..++|..+|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999998887 33443 667777888889999999999864 466777888888887 889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCC
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRI----YGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 367 (445)
|.++|++..+.+ ++..+..|...|.. .++.++|.+.|+++.+.+.+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 999999998765 57778888888988 88999999999999987653
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=2.4e-05 Score=59.46 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=67.5
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM----------VEEAEKFIEEKMGGLGGGDANVWGALLSACR 346 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (445)
.+.+++|...++...+. -+.+...|..+..++...++ +++|+..|++.++.. +.+..+|..+..+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 34566777777776654 13346666666666666554 458888888888776 567788888888888
Q ss_pred Hc-----------CChHHHHHHHHHHHHhCCCCch
Q 047840 347 IY-----------GKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 347 ~~-----------g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
.. |++++|++.|+++++.+|++..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 76 4899999999999999998753
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=7.9e-05 Score=53.43 Aligned_cols=66 Identities=6% Similarity=-0.184 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
++...+..+...+...|++++|++.|+++++..|.++.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999999998764
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.76 E-value=0.00026 Score=49.55 Aligned_cols=80 Identities=14% Similarity=0.081 Sum_probs=63.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 306 VVDLLARAGMVEEAEKFIEEKMGGLGGGDAN-VWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 306 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
....+...|++++|...+++.++.. +.+.. .+..+..++...|++++|+..|+++++.+|.++.++.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 4556778899999999999988766 55677 88999999999999999999999999999988776632 34
Q ss_pred hHHHHHHHHH
Q 047840 385 DMEANKVRKL 394 (445)
Q Consensus 385 ~~~A~~~~~~ 394 (445)
+.++...+++
T Consensus 77 ~~~a~~~~~~ 86 (99)
T 2kc7_A 77 VMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 4555555543
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.73 E-value=0.0002 Score=49.06 Aligned_cols=65 Identities=20% Similarity=0.109 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 334 DANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 334 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
+...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678889999999999999999999999999999999999999999999999999999998764
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.65 E-value=0.00028 Score=65.36 Aligned_cols=127 Identities=9% Similarity=-0.055 Sum_probs=94.6
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCC---C-CHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhh----C-CCCC-hhHHH
Q 047840 238 GVAMNGDAKKSLELFDRMVKS---GTQ---P-TETTFVAVLTTCTHAKMVRDGLNLFENMSAVY----G-VEPQ-LEHYA 304 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~---~~~---p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~ 304 (445)
.+...|++++|+.++++..+. -.. | ...+++.+...|...|++++|..++++....+ | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999887653 112 2 24578889999999999999999998876531 2 1222 56688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhc-----CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 305 CVVDLLARAGMVEEAEKFIEEKMG-----GLG-GGD-ANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 305 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
.|...|...|++++|+.++++.++ .|. .|+ ..+.+.+..++...+.+++|+.++.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887643 231 122 234566677788889999999999999873
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.60 E-value=0.00087 Score=50.31 Aligned_cols=91 Identities=12% Similarity=-0.039 Sum_probs=59.2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG---MVEEAEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIE 352 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 352 (445)
.....+.+-|.+.... + .++..+.-.+.-++++.+ +++++..++++..+.. .| +...+-.+.-++.+.|+++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHH
Confidence 3455566666655543 2 356666666666777766 5567777777776654 23 3445555666777788888
Q ss_pred HHHHHHHHHHHhCCCCchh
Q 047840 353 VGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~ 371 (445)
+|.+.++.+++.+|++..+
T Consensus 89 ~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHH
Confidence 8888888888888876533
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.55 E-value=0.00067 Score=61.69 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=81.1
Q ss_pred hcCChHHHHHHHHHHhcC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCch---hHHHHH
Q 047840 312 RAGMVEEAEKFIEEKMGG---LGGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAE-----MGITDFS---THVLSY 376 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~ 376 (445)
..|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++++ .||+++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999998876442 12232 36789999999999999999999999987 5666554 577899
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHH
Q 047840 377 NIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIH 436 (445)
Q Consensus 377 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (445)
.+|..+|++++|+.++++..+.... .-...||...+++..++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 9999999999999999988653211 12357888887777665
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.53 E-value=0.0005 Score=62.65 Aligned_cols=117 Identities=11% Similarity=-0.007 Sum_probs=85.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCC---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCch---h
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGL---GGGD----ANVWGALLSACRIYGKIEVGNRVWRKLAE-----MGITDFS---T 371 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~ 371 (445)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.++.+|...|++++|+.+++++++ .+|.++. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999998876531 2222 35788889999999999999999998886 4565544 4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCccCCcccEEEECCeEeEEecCCCCcchhhHHHHHHHHHHhc
Q 047840 372 HVLSYNIYKEAGWDMEANKVRKLISETGMKKKPGCSVIEVNGVVEEFLAGDNRHAQAGEIYRVIHSFLKM 441 (445)
Q Consensus 372 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (445)
+..|+..|..+|++++|+.++++..+--. ..-...||...+++..++..+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHH
Confidence 66888899999999999998888765311 11235788888888777766543
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.47 E-value=0.0083 Score=52.48 Aligned_cols=70 Identities=9% Similarity=-0.089 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 297 EPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.++++..++|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4455566666555555677777777777766554 566666666666666777777777777777776654
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.43 E-value=0.002 Score=44.31 Aligned_cols=71 Identities=10% Similarity=0.033 Sum_probs=58.7
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 297 EPQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
+.++..+..+..++...++ .++|..++++.++.. +.++.....+...+...|++++|+..|+++++..|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4567777778877765544 689999999988877 7788888888999999999999999999999988883
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.42 E-value=0.00064 Score=47.42 Aligned_cols=59 Identities=15% Similarity=0.019 Sum_probs=54.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCch-hHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFS-THVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
....+...|++++|+..++++++..|.++. .+..++.+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999998 99999999999999999999999988754
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.37 E-value=0.0021 Score=45.37 Aligned_cols=78 Identities=14% Similarity=0.027 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhH
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGL------GGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 372 (445)
+...+-.+...+.+.|++..|...|+...+.. -.+...++..+..++.+.|+++.|...++++.+..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44555677788888888888888888765431 134677899999999999999999999999999999987765
Q ss_pred HHHH
Q 047840 373 VLSY 376 (445)
Q Consensus 373 ~~l~ 376 (445)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.25 E-value=0.0017 Score=59.10 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=75.2
Q ss_pred cCCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCC-HHHHHHHH
Q 047840 276 HAKMVRDGLNLFENMSAVY--GVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGG-----L-GGGD-ANVWGALL 342 (445)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~ 342 (445)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4678999999998877632 12222 467889999999999999999999886432 2 1233 35689999
Q ss_pred HHHHHcCChHHHHHHHHHHHH-----hCCCCchhH
Q 047840 343 SACRIYGKIEVGNRVWRKLAE-----MGITDFSTH 372 (445)
Q Consensus 343 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 372 (445)
..|...|++++|+.+++++++ .||+++.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999987 688877544
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.17 E-value=0.0026 Score=57.95 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=79.3
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHHHhcC-----C-CCCC-HHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVY--GVEPQ----LEHYACVVDLLARAGMVEEAEKFIEEKMGG-----L-GGGD-ANV 337 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 337 (445)
+..+.+.|++++|..++++..... -+.|+ ..+++.++.+|...|++++|+.++++.+.. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667889999999999887531 12222 467888999999999999999999876432 2 1232 356
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH-----hCCCCchhHHH
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAE-----MGITDFSTHVL 374 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 374 (445)
++.|...|...|++++|+.+++++++ .||+++.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999987 68888765543
No 220
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.15 E-value=0.00075 Score=60.47 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=140.4
Q ss_pred CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHH
Q 047840 29 NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYG 108 (445)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 108 (445)
|+..|..++.++.+.|.++ .-..++...++..- ++.+=+.|+-+|++.+++.+-.+++ ..|+......+.+-|.
T Consensus 82 Dps~y~eVi~~A~~~~~~e-dLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf 155 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWE-ELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCY 155 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCT-THHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHH
Confidence 6667888999999999998 77777776666533 3444457888999988876654442 2356666677778888
Q ss_pred cCCChHHHHHHhccCCC------------------------CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH
Q 047840 109 KMGDFENARELFEKMPE------------------------RNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES 164 (445)
Q Consensus 109 ~~g~~~~A~~~~~~~~~------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 164 (445)
..|.++.|.-+|..+.. .++.||-.+-.+|...+++..|.-.--.++- .||
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had-- 230 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD-- 230 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--
Confidence 88888888888777631 3677888888888888888777554433331 222
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCC----C-------ChhhHH
Q 047840 165 GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISN----K-------DAGAWN 233 (445)
Q Consensus 165 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~ 233 (445)
....++..|-..|.+++-+.+++.-.... .....+|+.|.-.|++- ++++..+.++-.-. | ....|.
T Consensus 231 eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ 308 (624)
T 3lvg_A 231 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 308 (624)
T ss_dssp CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHH
Confidence 22345666777888888887777766433 45667777777777764 45555554443221 2 455677
Q ss_pred HHHHHHHhcCChHHHHH
Q 047840 234 AMISGVAMNGDAKKSLE 250 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~ 250 (445)
.++-.|..-.+++.|..
T Consensus 309 ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 309 ELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcchhHHHHHH
Confidence 78877887777776654
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.08 E-value=0.044 Score=39.63 Aligned_cols=141 Identities=12% Similarity=0.105 Sum_probs=92.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE 318 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 318 (445)
+.-.|..++..++..+.... .+..-||-++--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467777888887777664 24445555555444445555555666655443222 13455555
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 319 AEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
...-+-.+ + .+.......+..+...|+-++-.+++..+....++++.....++.+|.+.|+..+|.+++.+.-+.
T Consensus 80 Vi~C~~~~---n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 80 VVECGVIN---N--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHT---T--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh---c--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 55555554 2 344556666777888888888888888876666667888888888888888888888888888888
Q ss_pred CCc
Q 047840 399 GMK 401 (445)
Q Consensus 399 ~~~ 401 (445)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 875
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.05 E-value=0.018 Score=50.41 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHhh--c---CCcHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHh---cC-C----hHHHHHHHHH
Q 047840 260 TQPTETTFVAVLTTCT--H---AKMVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLAR---AG-M----VEEAEKFIEE 325 (445)
Q Consensus 260 ~~p~~~~~~~l~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~----~~~A~~~~~~ 325 (445)
.+.+...|...+.+.. . ..+..+|..+|+++.+. .|+ ...|..+.-+|.- .+ . .......+..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777666532 2 23457888888888865 565 3444433333321 11 1 1111112222
Q ss_pred Hhc-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 047840 326 KMG-GLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETG 399 (445)
Q Consensus 326 ~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 399 (445)
... ...+.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 111 12267888999888888888999999999999999986 46677889999999999999999998876653
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.96 E-value=0.28 Score=46.69 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETT----FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEA 319 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 319 (445)
+.+.|...+....+... .+... ...+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 55666666666654321 12221 222222333444234444455443322 22322233333333455667777
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 320 EKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
...|..|.... .....-.--+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 76666664322 11222233344555666666666666666653
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.86 E-value=0.11 Score=51.81 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 047840 70 SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149 (445)
Q Consensus 70 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 149 (445)
..++..+.+.|..+.|.++.+.. ..-.......|++++|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 45555566666666666554311 111223345666666666665553 34566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHH
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSV 220 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 220 (445)
.|.++.. |..+...+...|+.+...++.+.+...| -++....+|.+.|++++|.++
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~ 758 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL 758 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH
Confidence 6665532 2233333444555554444444444333 112223334445555555443
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.85 E-value=0.0075 Score=50.55 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHc-CCh
Q 047840 316 VEEAEKFIEEKMGGLGGGD---ANVWGALLSACRI-----YGKIEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEA-GWD 385 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~ 385 (445)
...|...+++.++.. |+ ...|..+...|.. .|+.++|.+.|++++++.|. +..++...++.+++. |+.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 356666777766544 44 5677777777777 48888888888888888886 488888888888774 888
Q ss_pred HHHHHHHHHHHhcCCccCCc
Q 047840 386 MEANKVRKLISETGMKKKPG 405 (445)
Q Consensus 386 ~~A~~~~~~m~~~~~~~~~~ 405 (445)
++|.+.+++.........|+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHHHcCCCCCCCC
Confidence 88888888887765553344
No 226
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.84 E-value=6.4e-05 Score=67.12 Aligned_cols=260 Identities=12% Similarity=0.131 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCC--CChhhHHHHHHHHHhcCCH
Q 047840 67 FVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPE--RNAVSWSAIMAAYSRISDF 144 (445)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 144 (445)
.+|..|..+....+.+.+|++.|-+. .|+..|..++.+..+.|.+++-...+...++ +++..=+.|+-+|++.++.
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL 132 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL 132 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence 34555555555555555554443222 2334455555555555555555555554443 2333334555555555554
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 145 KEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+..+++ -.||..-...+..-|...|.++.|.-+|. +..-|..|..++.+.|++..|.+.-++.
T Consensus 133 ~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys---------~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 133 AELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYN---------NVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp STTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGG---------GSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHH---------hCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4433322 12333334444444555554444443332 2222334444555555555544332222
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCC-CCChhHH
Q 047840 225 SNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGV-EPQLEHY 303 (445)
Q Consensus 225 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~ 303 (445)
.++.+|..+-.+|...+.+.-|.-.--.+.-. |+ ....++..|-..|-+++-+.+++.-. |+ ......|
T Consensus 197 --ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl---glErAHmGmF 266 (624)
T 3lvg_A 197 --NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMF 266 (624)
T ss_dssp --CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT---TSTTCCHHHH
T ss_pred --CChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh---CCCchhHHHH
Confidence 36668888888888877766654433333221 11 12234555666777777666666655 22 2445566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcC-CCCC------CHHHHHHHHHHHHHcCChHHHH
Q 047840 304 ACVVDLLARAGMVEEAEKFIEEKMGG-LGGG------DANVWGALLSACRIYGKIEVGN 355 (445)
Q Consensus 304 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a~ 355 (445)
+-|.-.|++- ++++..+.++..-.. +++. ....|.-++-.|..-.+++.|.
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 6666666554 445554444432211 3322 1223666666666666666553
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.013 Score=43.90 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC---cHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHH
Q 047840 248 SLELFDRMVKSGTQPTETTFVAVLTTCTHAK---MVRDGLNLFENMSAVYGVEP--QLEHYACVVDLLARAGMVEEAEKF 322 (445)
Q Consensus 248 a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 322 (445)
+.+.|.+..+.|. ++..+...+..++++.+ +.++++.+++.+.+. . .| +...+-.|.-+|.+.|++++|++.
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3334443333332 34444444444444444 333555555554443 1 12 122333334444455555555555
Q ss_pred HHHHhc
Q 047840 323 IEEKMG 328 (445)
Q Consensus 323 ~~~~~~ 328 (445)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555443
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.78 E-value=0.07 Score=53.15 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=24.6
Q ss_pred HccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 209 SKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRM 255 (445)
Q Consensus 209 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 255 (445)
...|+++.|.++.+.+. +...|..+...+.+.++++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555554442 3445555666666666666666655554
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.49 E-value=0.025 Score=41.85 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=48.7
Q ss_pred hcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHH
Q 047840 312 RAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHV 373 (445)
Q Consensus 312 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 373 (445)
..++.++|.++|+.+++.+-.. ..+|.....--.+.|+...|.+++.+++..+|.+.....
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 4478999999999886654233 888888888888999999999999999998887554443
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.47 E-value=0.022 Score=40.00 Aligned_cols=66 Identities=12% Similarity=-0.190 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 333 GDANVWGALLSACRIYGKIEVGNRVWRKLAEMG-------ITDFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 333 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.+..-+..++..+...|+++.|...|+.+++.. +..+.++..++.+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 455667788999999999999999999998842 345667889999999999999999999998764
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.97 E-value=0.025 Score=40.78 Aligned_cols=92 Identities=12% Similarity=-0.038 Sum_probs=52.3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHH---HHHHHHHHhcCCCCC--CHHHHHHHHHHHHHcCChH
Q 047840 278 KMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEE---AEKFIEEKMGGLGGG--DANVWGALLSACRIYGKIE 352 (445)
Q Consensus 278 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 352 (445)
.....+.+-|...... |. |+..+--.+.-++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3444555555544432 22 555555555556666655444 666777766544 23 2233444555667777777
Q ss_pred HHHHHHHHHHHhCCCCchhH
Q 047840 353 VGNRVWRKLAEMGITDFSTH 372 (445)
Q Consensus 353 ~a~~~~~~~~~~~~~~~~~~ 372 (445)
+|.+.++.+++..|.+..+.
T Consensus 92 ~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 77777777777777665433
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.92 E-value=0.14 Score=36.95 Aligned_cols=86 Identities=17% Similarity=0.113 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHH---HHHHHHHhHHhhCCCC--ChhHHHHHHHHHHhcCCh
Q 047840 242 NGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRD---GLNLFENMSAVYGVEP--QLEHYACVVDLLARAGMV 316 (445)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 316 (445)
......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++.+.+. + .| .....-.|.-++.+.|++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhH
Confidence 3344455555555544443 555555566666666665554 66667666643 1 13 222333455566777777
Q ss_pred HHHHHHHHHHhcCC
Q 047840 317 EEAEKFIEEKMGGL 330 (445)
Q Consensus 317 ~~A~~~~~~~~~~~ 330 (445)
++|++.++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777776544
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.82 E-value=0.05 Score=52.72 Aligned_cols=56 Identities=11% Similarity=-0.076 Sum_probs=51.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
-.+-|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34557788999999999999999999999999999999999999999999998884
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.51 Score=36.34 Aligned_cols=25 Identities=4% Similarity=0.263 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHH
Q 047840 129 VSWSAIMAAYSRISDFKEVLSLFRQ 153 (445)
Q Consensus 129 ~~~~~l~~~~~~~~~~~~a~~~~~~ 153 (445)
..|..|.......|+++-|.+.|.+
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3344444444444444444444433
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.54 E-value=0.91 Score=38.16 Aligned_cols=117 Identities=11% Similarity=0.100 Sum_probs=61.3
Q ss_pred cCChHHHHHHhhcCCCCChh--hHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhc
Q 047840 211 CGHVHSALSVFEGISNKDAG--AWNAMISG-VAMN--GD------AKKSLELFDRMVKSGTQPT---ETTFVAVLTTCTH 276 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~--~~~~l~~~-~~~~--~~------~~~a~~~~~~m~~~~~~p~---~~~~~~l~~~~~~ 276 (445)
.++..+-...+.+..+.++. .|..++.+ +... |+ ...|...+++..+. .|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHh
Confidence 34444555555555444333 34444332 2221 22 34555555555553 344 3455556655655
Q ss_pred C-----CcHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHHh-cCChHHHHHHHHHHhcCCCC
Q 047840 277 A-----KMVRDGLNLFENMSAVYGVEP--QLEHYACVVDLLAR-AGMVEEAEKFIEEKMGGLGG 332 (445)
Q Consensus 277 ~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~ 332 (445)
. |+.++|.+.|++..+. .| +..++....+.++. .|+.+++.+.+++.+.....
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3 6667777777666644 34 24555555666655 36666666666666655433
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.26 E-value=0.32 Score=36.06 Aligned_cols=102 Identities=7% Similarity=-0.031 Sum_probs=68.9
Q ss_pred ChhHHHHHHHHHHhcCCh------HHHHHHHHHHhcCCCCCCH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 299 QLEHYACVVDLLARAGMV------EEAEKFIEEKMGGLGGGDA--------NVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
|..+|-..+...-+.|+. ++.+++|++.... ++|+. ..|-... .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 455555555555555666 6666677766553 24432 1122112 123458999999999999887
Q ss_pred CCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCcc
Q 047840 365 GITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMKK 402 (445)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 402 (445)
...-+..|...+..-.++|+...|.+++.+....+-+|
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 55556677788888999999999999999988765544
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.06 E-value=1.4 Score=43.85 Aligned_cols=252 Identities=8% Similarity=-0.067 Sum_probs=121.6
Q ss_pred HHcCCChHHHHHHhccCCC----CChh--hHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--C-----CCHHHHHHHHHHH
Q 047840 107 YGKMGDFENARELFEKMPE----RNAV--SWSAIMAAYSRISDFKEVLSLFRQMQEVGM--K-----PNESGLVSVLTAC 173 (445)
Q Consensus 107 ~~~~g~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----p~~~~~~~l~~~~ 173 (445)
.+..|+.++++.++..... .+.. .=..+.-+....|..+++..++.......- . +....-.++.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455666667776666553 1211 112233345555655567776666544211 0 1111112222222
Q ss_pred HccCC-hhHHHHHHHHHHHcCCCCch--hhhhHHHHHHHccCChHHHHHHhhcCCCC-C--hhhHHHHHHHHHhcCChHH
Q 047840 174 AHLGA-ITQGLWVHSYAKRYHLEKNV--ILATAVVDMYSKCGHVHSALSVFEGISNK-D--AGAWNAMISGVAMNGDAKK 247 (445)
Q Consensus 174 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--~~~~~~l~~~~~~~~~~~~ 247 (445)
.-.|. -+++...+..+..... +.. ..-.+|...++-.|+-+....++..+.+. + ..-...+.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22332 2344444544444321 111 11223334455666666666665543221 2 1222233334556777777
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Q 047840 248 SLELFDRMVKSGTQPTETTF--VAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 248 a~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
+..+.+.+... ..|....- ..+.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 77777777653 22222211 23344577788877777788777752 222333333333344456776667777766
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHH
Q 047840 326 KMGGLGGGDANVWGALLSACRIYGKI-EVGNRVWRKLAE 363 (445)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 363 (445)
+.+.+ .|.+..-..+.-+....|+. .+++..+..+..
T Consensus 620 L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 65544 44444444444444444443 566777776653
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=2 Score=39.13 Aligned_cols=92 Identities=9% Similarity=0.140 Sum_probs=52.8
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCC----C-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCH--HH
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISN----K-D----AGAWNAMISGVAMNGDAKKSLELFDRMVK----SGTQPTE--TT 266 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~----~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~p~~--~~ 266 (445)
..|...|...|++.+|..++..+.. . + ...+..-+..|...+++..|..++++... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4456666777777777776665531 1 1 23455556667777777777777776532 1112221 23
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
+...+..+...+++.+|.+.|.++...
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444455556667777777766666543
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.56 E-value=0.12 Score=46.28 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCccCCcc
Q 047840 338 WGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISE-----TGMKKKPGC 406 (445)
Q Consensus 338 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 406 (445)
...++.++...|+++++...++.+...+|-+...+..++.++.+.|+..+|.+.|+...+ .|+.|.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344566677778888888888888888887777788888888888888888887777643 477775543
No 240
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.41 E-value=0.75 Score=31.31 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+...-.+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 55678888888888888999999999999999999999999999998876554444566554
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.21 E-value=1.1 Score=32.55 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 299 QLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 299 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33333333334444444444444443333333
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.77 E-value=1.8 Score=33.34 Aligned_cols=128 Identities=11% Similarity=0.110 Sum_probs=74.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVE 317 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 317 (445)
...+.|+++.|.++.+++ .+...|..|.......|+++-|...|..... +..+.-.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHH
Confidence 344567777777776654 2566777777777777777777777776652 233444455567766
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 318 EAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLI 395 (445)
Q Consensus 318 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 395 (445)
+..++-+.....| . ++.....+.-.|+++++.++|.+.-+ +...+......|-.+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 6665555544333 1 44445555667777777777755321 111111222245566666676654
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.36 E-value=4.5 Score=41.96 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=17.2
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
++.....+..+|...|++++|..+|.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3333344556667777777777777654
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.16 E-value=3.7 Score=35.09 Aligned_cols=180 Identities=10% Similarity=-0.006 Sum_probs=102.4
Q ss_pred HhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHH----HH
Q 047840 77 SLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSL----FR 152 (445)
Q Consensus 77 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~ 152 (445)
...|++=+|.+. |.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ ++
T Consensus 24 I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 24 IKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHH
Confidence 345666666655 455666667777777777665432 3345566776665554 44
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChh-HHHHHHHHHH----HcC--CCCchhhhhHHHHHHHccCChHHHHHHhhcCC
Q 047840 153 QMQEVGMKPNESGLVSVLTACAHLGAIT-QGLWVHSYAK----RYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 153 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
-..+.+++++......++..+.....-+ .-.++.+.++ +.| ...++.....+...|.+.|++.+|+..|---.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 4455678888877777777766543222 1223333333 333 23467788888899999999999988775222
Q ss_pred CCChhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 226 NKDAGAWNAMISGVAMN---GDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 226 ~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
..|...+..++--+... |...++ +...-..++. |...++...|..+++...+.
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 22344444444333322 222221 1111122222 44568888888888877654
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.11 E-value=1.8 Score=31.33 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 047840 315 MVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSY 376 (445)
Q Consensus 315 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 376 (445)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++..|+++|+-+...-.+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44467777788888888999999999999999999999999999999876544455566554
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.74 E-value=1.8 Score=44.92 Aligned_cols=78 Identities=6% Similarity=-0.026 Sum_probs=44.3
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcC----CCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGI----SNKDA----GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVL 271 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 271 (445)
-|..++..+.+.+.++.+.++-... ...+. ..|..+...+...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3555666666666666665554322 11121 2466677777777888888777776655433 234455555
Q ss_pred HHhhcCCc
Q 047840 272 TTCTHAKM 279 (445)
Q Consensus 272 ~~~~~~~~ 279 (445)
..++..|.
T Consensus 979 ~~lce~~~ 986 (1139)
T 4fhn_B 979 NQLTKQGK 986 (1139)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 55554443
No 247
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.41 E-value=7.7 Score=36.92 Aligned_cols=320 Identities=9% Similarity=0.003 Sum_probs=162.2
Q ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCC---CCC
Q 047840 52 FVHAHVVKFGFGE-DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMP---ERN 127 (445)
Q Consensus 52 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~ 127 (445)
++...+.+..-.| ....-+..+..+.+.+++......+.. ...+...-.....+....|+..+|......+- ...
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~ 135 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQ 135 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Confidence 4444445532222 223345556677778899988887776 44456666667778888888766666554432 124
Q ss_pred hhhHHHHHHHHHhcCCHhH--HHHHHHHHHHcC-----------CCCCHHHH-HHHHHHHHccCChhHHHHHHHHHHHcC
Q 047840 128 AVSWSAIMAAYSRISDFKE--VLSLFRQMQEVG-----------MKPNESGL-VSVLTACAHLGAITQGLWVHSYAKRYH 193 (445)
Q Consensus 128 ~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~~~-----------~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 193 (445)
+..+..++..+.+.|.... ...=++.+...| +.++.... ..++.... +...+..... ..
T Consensus 136 p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~---~~- 208 (618)
T 1qsa_A 136 PNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR---TT- 208 (618)
T ss_dssp CTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH---HS-
T ss_pred cHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh---cc-
Confidence 5566777777776665433 333333333332 11121111 11111111 1111111111 11
Q ss_pred CCCchh---hhhHHHHHHHccCChHHHHHHhhcCCC---CChh----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 194 LEKNVI---LATAVVDMYSKCGHVHSALSVFEGISN---KDAG----AWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 194 ~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
.++.. .+...+.-+.+ .+.+.|...+....+ .+.. .+..+...+...+...++...+....... ++
T Consensus 209 -~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~ 284 (618)
T 1qsa_A 209 -GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (618)
T ss_dssp -CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred -CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CC
Confidence 12211 11112222333 377888888876532 1222 23333333444553566677777655432 34
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 047840 264 ETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLS 343 (445)
Q Consensus 264 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 343 (445)
.....-.+....+.|+++.|...|+.|... ......-.--+..++...|+.++|..+|..+.. +.+ .|..+.
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~---~~~--fYg~lA- 356 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVA- 356 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHH-
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--hHHHHH-
Confidence 433334444445679999999999888642 112233333456677888999999999999863 222 233332
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCch-----hHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 344 ACRIYGKIEVGNRVWRKLAEMGITDFS-----THVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 344 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
..+.|..-.. . .....+.... .-...+..+...|...+|...+..+.+
T Consensus 357 -a~~Lg~~~~~-~----~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 357 -AQRIGEEYEL-K----IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp -HHHTTCCCCC-C----CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHcCCCCCC-C----CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 2233321000 0 0001111110 122345567788888888887777654
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.12 E-value=0.85 Score=34.53 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=56.8
Q ss_pred HHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCCCHHHHHH
Q 047840 270 VLTTCTHAKMVRDGLNLFENMSAVYGVEPQL-------EHYACVVDLLARAGMVEEAEKFIEEKMGG--LGGGDANVWGA 340 (445)
Q Consensus 270 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ 340 (445)
-+..+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.+.. .+..+..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3445556666666666666555432333432 23445556666666666666666664322 11111111100
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 341 LLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 341 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
+. ........ . ..+.+...-.-++.+|.+.|++++|+.+++.+.
T Consensus 106 ~~----~~ss~p~s-------~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 106 TG----NSASTPQS-------Q-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cc----ccCCCccc-------c-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 00 00000000 0 011233456679999999999999999987653
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.10 E-value=1.1 Score=32.53 Aligned_cols=66 Identities=6% Similarity=-0.129 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHcCChHHHHHHHHHHHh
Q 047840 332 GGDANVWGALLSACRIYGKI---EVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.|++.+--.+..++.+..+. .+++.+++.+.+.+|. ....+..++.++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555544555555544432 3455555555555553 233444555566666666666665555543
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.00 E-value=1.1 Score=30.44 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+.-+..+-++.+.....-|++....+.+.+|.+.+++..|.++++.++.+.+ +...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHH
Confidence 3445666666666666778888888888888888888888888888776533 3344566555
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.94 E-value=3.1 Score=31.49 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=13.9
Q ss_pred hHHHHHHHccCChHHHHHHhhcCC
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGIS 225 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~ 225 (445)
.-+..||.+.+++++|+.+++.++
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHCCHHHHHHHHhcCC
Confidence 335556666666666666666554
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.30 E-value=2.6 Score=41.01 Aligned_cols=51 Identities=14% Similarity=-0.044 Sum_probs=27.3
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKL 361 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 361 (445)
+...|+++-|+++-++....- +-+-.+|-.|..+|...|+++.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334555555555555554433 334555555566666666665555554443
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.00 E-value=6.1 Score=31.31 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHHccC
Q 047840 162 NESGLVSVLTACAHLG 177 (445)
Q Consensus 162 ~~~~~~~l~~~~~~~~ 177 (445)
+...-...+.++.+.+
T Consensus 94 ~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIG 109 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 254
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=89.89 E-value=17 Score=36.32 Aligned_cols=262 Identities=8% Similarity=-0.012 Sum_probs=145.0
Q ss_pred HHhcCCHHHHHHHhccCCC----CChhh--HHHHHHHHHcCCChHHHHHHhccCCC-CC--------h--hhHHHHHHHH
Q 047840 76 YSLVHKMGTARALFDKSPD----RDVVT--WTTMVDGYGKMGDFENARELFEKMPE-RN--------A--VSWSAIMAAY 138 (445)
Q Consensus 76 ~~~~g~~~~a~~~~~~~~~----~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~--~~~~~l~~~~ 138 (445)
....|+.+++..+++.-.. .+..+ -..+.-+.+..|..+++..++..... ++ . ..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566888888888887654 22222 22344455666766677776665432 22 1 1122233333
Q ss_pred HhcCC-HhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHH--HHHccCC
Q 047840 139 SRISD-FKEVLSLFRQMQEVGMKPNESGLV--SVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVD--MYSKCGH 213 (445)
Q Consensus 139 ~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~ 213 (445)
+-.|. -+++.+.+..+.... .+...... ++...+...|+-+....++..+.+.. +..+...+.. ++.-.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 33342 346666666666532 11111122 33344556778777778887776542 2233333333 3446788
Q ss_pred hHHHHHHhhcCCC-CChh-hH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHH
Q 047840 214 VHSALSVFEGISN-KDAG-AW---NAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFE 288 (445)
Q Consensus 214 ~~~a~~~~~~~~~-~~~~-~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 288 (445)
.+.+..+++.+.. .++. -| .++.-+|+..|+.....+++..+... ...+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 7777777776653 3333 22 23455788899988888899988765 22233333333334445666666777777
Q ss_pred HhHHhhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 289 NMSAVYGVEPQLEHYACVVDLLARAGMV-EEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 289 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
.+.. ...|....-.++.-+....|.. .++..++..+.. .+|..+-..-+.++..
T Consensus 619 ~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 619 LLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp TGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred HHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 6664 3345555445555555555554 678888888853 3455554444444443
No 255
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.81 E-value=4.4 Score=29.36 Aligned_cols=73 Identities=11% Similarity=0.010 Sum_probs=41.6
Q ss_pred CChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCch
Q 047840 298 PQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFS 370 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 370 (445)
|+..+--.+.-++.+..+ ..+++.+++++.+.+.......+-.+.-++.+.|++++|.+..+.+++..|.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 444443344444554443 3456666666665441112344555566677777777777777777777777643
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.26 E-value=6.5 Score=34.97 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047840 303 YACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 303 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 363 (445)
...++..+...|++++|...+..+.... +-+...|..++.++...|+..+|++.|++..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666667777777777777666555 55666777777777777777777777776544
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.11 E-value=12 Score=33.30 Aligned_cols=294 Identities=12% Similarity=0.036 Sum_probs=148.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhccCCC--------CChhhHHHHHHHHHcCC-ChHHHHHHhccCCC---CChhhH----
Q 047840 68 VVSSLLEFYSLVHKMGTARALFDKSPD--------RDVVTWTTMVDGYGKMG-DFENARELFEKMPE---RNAVSW---- 131 (445)
Q Consensus 68 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~---- 131 (445)
....|...|.+.|+.++..+++..... ........++..+.... ..+.-.++..+..+ ..-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888776544 13344556666665543 23333333333321 111222
Q ss_pred --HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCChhHHHHHHHHHHHcC--CCCchhhhh
Q 047840 132 --SAIMAAYSRISDFKEVLSLFRQMQEVGMKPNE-----SGLVSVLTACAHLGAITQGLWVHSYAKRYH--LEKNVILAT 202 (445)
Q Consensus 132 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 202 (445)
..++..|...|++.+|.+++.++.+.=-..|. ..+..-+..|...+++.++...+....... +.+++.+..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 25778889999999999998888663111121 345556667788888888888887776432 223333222
Q ss_pred HH----HHHHH-ccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcC
Q 047840 203 AV----VDMYS-KCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHA 277 (445)
Q Consensus 203 ~l----~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 277 (445)
.+ ...+. ..++|..|...|-+. ...|-..+.+ .+. +...|..+..... .
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea-----------f~~f~~~~~~-~~~-------------~~lkYlvL~aLl~-~ 234 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA-----------FEGFDSVDSV-KAL-------------TSLKYMLLCKIML-G 234 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH-----------HHHHTTTCHH-HHH-------------HHHHHHHHHHHHT-T
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH-----------HhcccccccH-HHH-------------HHHHHHHHHHHHc-C
Confidence 11 12234 556666666555331 0111111110 000 1223333222222 2
Q ss_pred CcHHHHHHHH-HHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047840 278 KMVRDGLNLF-ENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNR 356 (445)
Q Consensus 278 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 356 (445)
...+ ...++ ......+ ..|....+..++.+| ..+++.+...++..... .+..|+.....+-..+.+. . ..
T Consensus 235 ~r~e-l~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~~~L~~~I--r---~~ 305 (394)
T 3txn_A 235 QSDD-VNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHLGTLYDTM--L---EQ 305 (394)
T ss_dssp CGGG-HHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHHHHHHHHH--H---HH
T ss_pred CHHH-HHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHHHHHHHHH--H---HH
Confidence 2111 11111 1111111 235555566666665 46677777777776533 3455665432222222111 1 12
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 047840 357 VWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLISETGM 400 (445)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 400 (445)
.+.++. .|-....+..++..+.- ..++++..+.+|...|.
T Consensus 306 ~L~~i~--~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 306 NLCRII--EPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHH--TTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHh--HhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 223332 23334455566655543 67888888888887664
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.03 E-value=7.3 Score=30.84 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 047840 70 SSLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLS 149 (445)
Q Consensus 70 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 149 (445)
...+..+...|+.+....+.+.+..++...-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+ +..
T Consensus 37 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~ 115 (211)
T 3ltm_A 37 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVE 115 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHH
Confidence 3333444444443333333333333444444444444555454433334444444455555555555555555432 223
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 047840 150 LFRQMQEVGMKPNESGLVSVLTACAHLGA 178 (445)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 178 (445)
.+..+.. .++...-...+.++...++
T Consensus 116 ~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 116 PLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 3333322 2344444444444444443
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=88.33 E-value=8.7 Score=31.86 Aligned_cols=204 Identities=10% Similarity=0.039 Sum_probs=94.9
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCcc---cHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhc
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNNY---TFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFV--VSSLLEFYSLV 79 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ 79 (445)
.++.|+.+ +++.+.+.|..++.. .-...+...+..|+.+ +.+.+.+.|..++... -.+.+...+..
T Consensus 12 A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~-----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 12 AVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED-----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH-----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred HHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH-----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 34556654 344444555444322 1123444455666665 3444455565544321 12334445567
Q ss_pred CCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChh------------hHHHHHHHHHhcCCH
Q 047840 80 HKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPERNAV------------SWSAIMAAYSRISDF 144 (445)
Q Consensus 80 g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~ 144 (445)
|+.+-+..+++....+ +...++ .+...+..|+.+-+..+++.-..++.. .-...+...+..|+.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~ 161 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCH
Confidence 8888777777765443 222222 233345567777666666654432211 001223334445665
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhh--hhHHHHHHHccCChHHHHH
Q 047840 145 KEVLSLFRQMQEVGMKPN---ESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL--ATAVVDMYSKCGHVHSALS 219 (445)
Q Consensus 145 ~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~ 219 (445)
+-+..+++. .|..++ ....+.+. ..+..++......+.+.+.+.|..++... -.+.+...++.|+.+-+..
T Consensus 162 ~~v~~Ll~~---~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 237 (285)
T 1wdy_A 162 EVLKILLDE---MGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQR 237 (285)
T ss_dssp HHHHHHHHT---SCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh---cCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 544444332 133222 11122222 22334554445566666666665544321 1223344455566666655
Q ss_pred Hhh
Q 047840 220 VFE 222 (445)
Q Consensus 220 ~~~ 222 (445)
+++
T Consensus 238 Ll~ 240 (285)
T 1wdy_A 238 LLE 240 (285)
T ss_dssp HHH
T ss_pred HHh
Confidence 555
No 260
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.33 E-value=6 Score=29.05 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchh
Q 047840 297 EPQLEHYACVVDLLARAGM---VEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFST 371 (445)
Q Consensus 297 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 371 (445)
.|+..+--.+.-++.+..+ ..+++.+++.+.+.+........-.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555555556666554 34677777777664411233444556667888888899988888888888887533
No 261
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=88.03 E-value=6.3 Score=28.94 Aligned_cols=67 Identities=6% Similarity=-0.157 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 047840 332 GGDANVWGALLSACRIYGK---IEVGNRVWRKLAEMGIT-DFSTHVLSYNIYKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 332 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 398 (445)
.|+..+--.+..++.+..+ ..+++.+++.+...+|. .......++.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6788888888888888765 46889999999998885 4456678899999999999999999998763
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.06 E-value=3.9 Score=29.60 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 047840 244 DAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVV 307 (445)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 307 (445)
+.-+..+-++.+.....-|++......+.+|.+.+++..|.++|+-++.+. .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 344566666666666778888888888888888888888888888888753 33455666665
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.84 E-value=16 Score=31.42 Aligned_cols=167 Identities=12% Similarity=0.069 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHc
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLF----RQMQEVGMKPNESGLVSVLTACAH 175 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~~ 175 (445)
|.++..=|.+.+++++|++++.. -...+.+.|+...|-++- +-+.+.++++|.....-++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555556667777777666543 123445556665554443 444556677777777777776665
Q ss_pred cCChhH-HHHHHHHH----HHcC--CCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHH
Q 047840 176 LGAITQ-GLWVHSYA----KRYH--LEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKS 248 (445)
Q Consensus 176 ~~~~~~-a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 248 (445)
...-+- -..+.+++ .+.| ...|+.....+...|.+.+++.+|+..|---.++++..+..++-.+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~-- 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH-- 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG--
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc--
Confidence 543221 12233333 3333 34567788888999999999999998874322222345544444333333211
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHH
Q 047840 249 LELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 249 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
.++.+.-..++. |...++...|...++...+
T Consensus 185 ------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122222333333 4445788888877766554
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.26 E-value=22 Score=32.31 Aligned_cols=97 Identities=9% Similarity=0.092 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHhhcCCcHHHHHHHHHHhHHh-hCCCCC----hh
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKS--GTQPT---ETTFVAVLTTCTHAKMVRDGLNLFENMSAV-YGVEPQ----LE 301 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~ 301 (445)
...|...+...|++.+|.+++..+... |..+. ...+...++.|...+++..|..++..+... ....++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998643 22221 235666777889999999999999987532 122222 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhc
Q 047840 302 HYACVVDLLARAGMVEEAEKFIEEKMG 328 (445)
Q Consensus 302 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 328 (445)
.+...+..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456677778888999999888877643
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.59 E-value=12 Score=33.86 Aligned_cols=94 Identities=11% Similarity=0.040 Sum_probs=53.5
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCCC------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHH--
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISNK------DAGAWNAMISGVAMNGDAKKSLELFDRMVKS---GTQPTETTFV-- 268 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~-- 268 (445)
+...+...|.+.|+++.|.+.|.++... -...+...+..+...+++..+...+.+.... +..|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556777777777777777777665431 2335556666677777777777777765432 2222222111
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHh
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAV 293 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (445)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122244566677776666665543
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.33 E-value=4.5 Score=33.46 Aligned_cols=113 Identities=11% Similarity=0.075 Sum_probs=74.4
Q ss_pred HHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHH
Q 047840 272 TTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDA----NVWGALLSACRI 347 (445)
Q Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 347 (445)
....+.|++++++.....-.+ .-+.|...-..|+..+|-.|++++|.+-++...+.. |+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHH--
Confidence 456788999999998888776 345677777889999999999999999888876544 443 3344444432
Q ss_pred cCChHHHHHHHHHHHH--hCC---CCchhH-HHHHHH--HHHcCChHHHHHHHHHHHhc
Q 047840 348 YGKIEVGNRVWRKLAE--MGI---TDFSTH-VLSYNI--YKEAGWDMEANKVRKLISET 398 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~--~~~---~~~~~~-~~l~~~--~~~~g~~~~A~~~~~~m~~~ 398 (445)
..=.++.. ..| ..+..+ ..++.+ ....|+.++|.++.....+.
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11122222 112 223333 344444 44569999999999888654
No 267
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=83.17 E-value=12 Score=31.50 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=108.8
Q ss_pred hcCCchHHHHHHHHHHhcCC-CCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCHHHH
Q 047840 7 QANFPKLSVFCYLDMLDMGF-EPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKMGTA 85 (445)
Q Consensus 7 ~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 85 (445)
+..+..+..+++.. .++ .+|..-.+ .+...+..|+.+ .+.. +.+.|..++...-.+.+...+..|+.+-+
T Consensus 8 ~~~~~~~v~~lL~~---~~~~~~d~~g~t-~L~~A~~~g~~~-~v~~----Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 8 NTWKSKQLKSFLSS---KDTFKADVHGHS-ASYYAIADNNVR-LVCT----LLNAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp GGCCHHHHHHHHHS---TTTTCCCTTSCC-HHHHHHHTTCHH-HHHH----HHHTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred HhcCHHHHHHHHHh---CCCCccCCCCCC-HHHHHHHcCCHH-HHHH----HHhCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 44555555555543 232 12333333 344455677777 4444 44556544443333455666788999988
Q ss_pred HHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 047840 86 RALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGM 159 (445)
Q Consensus 86 ~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 159 (445)
..+++....+ +...++. +...+..|+.+-+..+++.-..+ +..-+...+...+..|+.+-+..+ .+.|.
T Consensus 79 ~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~L----l~~g~ 153 (285)
T 3kea_A 79 KILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF----LSEIP 153 (285)
T ss_dssp HHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHH----HTTSC
T ss_pred HHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH----HhCCC
Confidence 8888865543 2222333 34445678888777777764332 322323444555667776544443 34443
Q ss_pred CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCC
Q 047840 160 KP-NESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKD 228 (445)
Q Consensus 160 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 228 (445)
.+ +...-.+.+...+..|+.+-+..+++.-..... .+..-.+..+...+..|+.+-+.-+++.-..++
T Consensus 154 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 154 STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222 (285)
T ss_dssp TTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCST
T ss_pred ccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 33 221223344455677787766666655433321 222222333455566788877777776544443
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=82.89 E-value=15 Score=28.65 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=10.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 228 DAGAWNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 228 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
+...-...+.++...|. .++...+..+.
T Consensus 151 ~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 33333333344444433 23333333333
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.47 E-value=3.9 Score=33.81 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q 047840 308 DLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGIT 367 (445)
Q Consensus 308 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 367 (445)
....+.|++++|++....-++.. +-|...-..+++.++-.|+++.|..-++-..+++|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 34567899999999998888777 778888888999999999999999999999999987
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.63 E-value=5.9 Score=35.84 Aligned_cols=61 Identities=3% Similarity=-0.085 Sum_probs=31.5
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhHHhh-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047840 266 TFVAVLTTCTHAKMVRDGLNLFENMSAVY-GVEPQLEHYACVVDLLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 266 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 326 (445)
+...+...|.+.|+++.|.+++.++.... +...-...+-..+..+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555556666666666666655431 11111334444555555566666666555554
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.28 E-value=26 Score=30.22 Aligned_cols=168 Identities=15% Similarity=0.094 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHh
Q 047840 199 ILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELF----DRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 199 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
.+|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455566668888999999887643 234566677776665554 5556678888988888787776
Q ss_pred hcCCc--HHHHHHHHHHhHH---hhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047840 275 THAKM--VRDGLNLFENMSA---VYG--VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRI 347 (445)
Q Consensus 275 ~~~~~--~~~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 347 (445)
..... .+. ..+.+.+.+ .+| -.-++.....+...|.+.+++.+|...|- . +-.+.+..+..++.-+..
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHH
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHH
Confidence 65443 211 222222221 113 22356667788889999999999988873 2 423344566555544444
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHcCChHHHHHHHHHHHh
Q 047840 348 YGKIEVGNRVWRKLAEMGITDFSTHV-LSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 348 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
.+. |.....|. ..+--|.-.++...|..+++...+
T Consensus 180 ~~~---------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 180 QDE---------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSC---------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcC---------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 332 22222232 234457788899999887777654
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.46 E-value=11 Score=25.55 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=60.3
Q ss_pred CChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+.-||...|.++.. .+.|-.+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777776653 22222233445788899999999999999899998887754 47788888888887777
Q ss_pred HcCCCCCHHHH
Q 047840 257 KSGTQPTETTF 267 (445)
Q Consensus 257 ~~~~~p~~~~~ 267 (445)
..| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 765 3444444
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.69 E-value=12 Score=25.44 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 047840 177 GAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMV 256 (445)
Q Consensus 177 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 256 (445)
...++|..+-+.+...+. ...+--.-+..+.+.|++++|..+.+.+.-||...|.++.. .+.|-.+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777766653 22222233445778899999999999998889888877754 46677777777777776
Q ss_pred HcCCCCCHHHH
Q 047840 257 KSGTQPTETTF 267 (445)
Q Consensus 257 ~~~~~p~~~~~ 267 (445)
..| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 664 3444444
No 274
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.67 E-value=20 Score=28.10 Aligned_cols=53 Identities=9% Similarity=-0.104 Sum_probs=33.8
Q ss_pred cCChHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 313 AGMVEEAEKFIEEKMGGLGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 313 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
+++..++..+|..|..+++- --...|......+...|++++|.++|+..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34455777777776665443 334556666666777777777777777776644
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.05 E-value=14 Score=25.14 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=29.5
Q ss_pred HHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 047840 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG 158 (445)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 158 (445)
.+...|++++|..+.+...-||...|.+|.. .+.|..+++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3455666666666666666666666655433 35566666666555555544
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.41 E-value=23 Score=27.50 Aligned_cols=109 Identities=9% Similarity=0.019 Sum_probs=52.2
Q ss_pred chhhhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 047840 197 NVILATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH 276 (445)
Q Consensus 197 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 276 (445)
+..+-...+.++.+.++.+....+...+..++...-...+.++...+.. .+...+..+.. .++...-...+.++..
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 164 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333334444444444433333333333444544444455555555543 33333444333 2455555566666666
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcC
Q 047840 277 AKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAG 314 (445)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 314 (445)
.|. .++...+..+... ++...-...+.++.+.+
T Consensus 165 ~~~-~~~~~~L~~~l~d----~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 165 IGG-ERVRAAMEKLAET----GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HCS-HHHHHHHHHHHHH----CCHHHHHHHHHHHHHCC
T ss_pred hCc-hhHHHHHHHHHhC----CCHHHHHHHHHHHHHHH
Confidence 665 3455555555543 45555555555555443
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.37 E-value=14 Score=25.07 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 047840 106 GYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVG 158 (445)
Q Consensus 106 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 158 (445)
.+...|++++|..+.+...-||...|.+|.. .+.|..+++..-+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3445566666666666666666666554433 34555555555555554443
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.79 E-value=48 Score=29.39 Aligned_cols=156 Identities=7% Similarity=0.057 Sum_probs=83.2
Q ss_pred HHHHHHHccCChHHHHHHhhcCCC----CC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHH--H
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISN----KD-----AGAWNAMISGVAMNGDAKKSLELFDRMVKS--GTQPTETTFV--A 269 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~--~ 269 (445)
.++..|...|++.+|..++.++.+ .| ...+..-+..|...++..++...+...... .+.|++..-. .
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355556666666666555544322 11 224555667788889999998888876543 2223333222 2
Q ss_pred HHH--Hhh-cCCcHHHHHHHHHHhHHhhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHH-H-HhcCCCCCCHHHHH
Q 047840 270 VLT--TCT-HAKMVRDGLNLFENMSAVYGVEPQL-----EHYACVVDLLARAGMVEEAEKFIE-E-KMGGLGGGDANVWG 339 (445)
Q Consensus 270 l~~--~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~-~-~~~~~~~~~~~~~~ 339 (445)
... .+. ..+++..|...|-+....+.-.-++ ..|..|... -.++..+...++. . .... ..|+...+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aL--l~~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKI--MLGQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH--HTTCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH--HcCCHHHHHHHhcccccccc-CCccHHHHH
Confidence 222 255 7889999998887776543311111 122222222 2344333333332 1 1111 246666677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLA 362 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~ 362 (445)
.++.++ ..+++.+...+++...
T Consensus 261 ~L~~a~-~~~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 261 SVAEAS-HKRSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHH-HTTCHHHHHHHHHHST
T ss_pred HHHHHH-HhCCHHHHHHHHHHHH
Confidence 777775 4577877766666543
No 279
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.31 E-value=26 Score=27.91 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=10.1
Q ss_pred HHHHHccCChHHHHHHhhc
Q 047840 205 VDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 205 ~~~~~~~g~~~~a~~~~~~ 223 (445)
+...+..|+.+-+..+++.
T Consensus 181 L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444555666655555544
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.87 E-value=25 Score=25.30 Aligned_cols=64 Identities=16% Similarity=0.297 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCCCC---hhhHHHHHHHHHhcC--CHhHHHHHHHHHHHcCCCCCH
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPERN---AVSWSAIMAAYSRIS--DFKEVLSLFRQMQEVGMKPNE 163 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~ 163 (445)
...++.-|...|+.++|.+.++++..|. ......+..++-+.+ ..+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3456666777777777777777776552 223334444444443 235566777777666655443
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=71.44 E-value=47 Score=28.28 Aligned_cols=168 Identities=8% Similarity=-0.015 Sum_probs=97.2
Q ss_pred hhhHHHHHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHhh
Q 047840 200 LATAVVDMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLEL----FDRMVKSGTQPTETTFVAVLTTCT 275 (445)
Q Consensus 200 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~l~~~~~ 275 (445)
.|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 444555667777888888887543 23445667776666654 444556688888888777777665
Q ss_pred cCCcHH-HHHHHHHHhHH---hhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc-
Q 047840 276 HAKMVR-DGLNLFENMSA---VYG--VEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY- 348 (445)
Q Consensus 276 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 348 (445)
....-+ .=.++.+.+.+ ..| -.-++.....+...|.+.|++.+|...|-. +-..|...+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhc
Confidence 432111 11222232221 112 123567777888889999999888887752 3112455555555444443
Q ss_pred --CChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHcCChHHHHHHHHHHHh
Q 047840 349 --GKIEVGNRVWRKLAEMGITDFSTHV-LSYNIYKEAGWDMEANKVRKLISE 397 (445)
Q Consensus 349 --g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 397 (445)
|...++ ..|. ..+--|.-.|+...|..+++...+
T Consensus 180 ~~~~~~e~---------------dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 180 DDIEDSTV---------------AEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TCCCHHHH---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCCcchH---------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 332222 1221 223356678899999998887653
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=71.31 E-value=9.6 Score=31.26 Aligned_cols=89 Identities=15% Similarity=-0.066 Sum_probs=50.5
Q ss_pred chhhcCCchHHHHHHHHHHhcCCCCCccc-------HHHHHHHhh--hcCCchhHHHHHHHHHHHhc---------CCC-
Q 047840 4 GYMQANFPKLSVFCYLDMLDMGFEPNNYT-------FPPLIKACV--ILGPLENFGMFVHAHVVKFG---------FGE- 64 (445)
Q Consensus 4 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~~a~~~~~~~~~~~---------~~~- 64 (445)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+ .+..+++.-...+ +..
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~-~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRND-TIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCT-HHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHH-HHHHHHHhcccccchHhhhccccccc
Confidence 34677888888888888877776665332 334444432 567777 6666665433211 110
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccCCC
Q 047840 65 DPFVVSSLLEFYSLVHKMGTARALFDKSPD 94 (445)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 94 (445)
|..-+ +.+...+..|+.+-+.-+++....
T Consensus 90 d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 90 YYRGQ-TALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SEESB-CHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccCCC-CHHHHHHHcCCHHHHHHHHhCCCC
Confidence 00112 234445567888877777775544
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.58 E-value=41 Score=27.59 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=9.4
Q ss_pred HHHHccCChHHHHHHhhc
Q 047840 206 DMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~ 223 (445)
...+..|+.+-+..+++.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 334455666555555543
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=68.29 E-value=61 Score=28.94 Aligned_cols=282 Identities=12% Similarity=0.115 Sum_probs=133.0
Q ss_pred HHHHHHHhcCCCCCccc--HHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChh--hHHHHHHHHHhcCCHHHHHHHhcc
Q 047840 16 FCYLDMLDMGFEPNNYT--FPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPF--VVSSLLEFYSLVHKMGTARALFDK 91 (445)
Q Consensus 16 ~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~ 91 (445)
++++.+.+.|..|+... ....+...+..|+.+ .+.. +.+.|..++.. .-.+.+...+..|+.+-+.-+++.
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~-~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE-VAKY----LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHH-HHHH----HHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH-HHHH----HHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhC
Confidence 34455555666565432 223455556677776 4433 34455444322 112344555678888888888876
Q ss_pred CCCCC---hhhHHHHHHHHHcCCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHH-
Q 047840 92 SPDRD---VVTWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNES- 164 (445)
Q Consensus 92 ~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~- 164 (445)
...++ ...++ .+...+..|+.+-+..+++.-... +...++ .+...+..|+.+-+..+ .+.|..|+..
T Consensus 103 ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~L----l~~g~~~~~~~ 176 (437)
T 1n11_A 103 NANPNLATTAGHT-PLHIAAREGHVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRVAELL----LERDAHPNAAG 176 (437)
T ss_dssp TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHHHHHH----HHTTCCTTCCC
T ss_pred CCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHHHHHH----HhCCCCCCCCC
Confidence 54432 22222 334445678888777777664432 222222 23334566776544433 3444443321
Q ss_pred --HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhh--hhHHHHHHHccCChHHHHHHhhcCCCC---ChhhHHHHHH
Q 047840 165 --GLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVIL--ATAVVDMYSKCGHVHSALSVFEGISNK---DAGAWNAMIS 237 (445)
Q Consensus 165 --~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 237 (445)
..+ .+...+..|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-... +....+. +.
T Consensus 177 ~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-L~ 250 (437)
T 1n11_A 177 KNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP-LH 250 (437)
T ss_dssp SSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH-HH
T ss_pred CCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HH
Confidence 111 233334555554 3444555554443321 123345556778888777777643322 2222222 22
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh---hHHHHHHHHHH
Q 047840 238 GVAMNGDAKKSLELFDRMVKSGTQPTE---TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL---EHYACVVDLLA 311 (445)
Q Consensus 238 ~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 311 (445)
..+..|+.+-+ +.+.+.|..++. ...+.+.. .+..|..+-+..+ .+. |..++. ...+.| ...+
T Consensus 251 ~A~~~g~~~~v----~~Ll~~~~~~~~~~~~g~t~L~~-A~~~~~~~~~~~L----l~~-g~~~~~~~~~g~t~L-~~A~ 319 (437)
T 1n11_A 251 LAAQEGHAEMV----ALLLSKQANGNLGNKSGLTPLHL-VAQEGHVPVADVL----IKH-GVMVDATTRMGYTPL-HVAS 319 (437)
T ss_dssp HHHHTTCHHHH----HHHHTTTCCTTCCCTTCCCHHHH-HHHHTCHHHHHHH----HHH-TCCTTCCCSSCCCHH-HHHH
T ss_pred HHHHCCCHHHH----HHHHhcCCCCCCCCCCCCCHHHH-HHHcCCHHHHHHH----HhC-CccCCCCCCCCCCHH-HHHH
Confidence 33455665433 333444443322 11222222 2344555443333 333 444332 122233 3345
Q ss_pred hcCChHHHHHHHHH
Q 047840 312 RAGMVEEAEKFIEE 325 (445)
Q Consensus 312 ~~g~~~~A~~~~~~ 325 (445)
..|+.+-+.-+++.
T Consensus 320 ~~g~~~~v~~Ll~~ 333 (437)
T 1n11_A 320 HYGNIKLVKFLLQH 333 (437)
T ss_dssp HSSCSHHHHHHHHT
T ss_pred HcCcHHHHHHHHhc
Confidence 67777655555543
No 285
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.18 E-value=15 Score=29.86 Aligned_cols=85 Identities=13% Similarity=-0.018 Sum_probs=49.4
Q ss_pred hhchhhcCCchHHHHHHHHHHhc--CCCC----CcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 047840 2 IRGYMQANFPKLSVFCYLDMLDM--GFEP----NNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEF 75 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (445)
|+.+....++++|+.++++.... +.++ +.......+..-...+.-. .+..+.+.+.. .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~-L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREA-ISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHH-HHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 45678889999999999987642 3332 1122233333333333333 44444444422 4455556667778
Q ss_pred HHhcCCHHHHHHHhc
Q 047840 76 YSLVHKMGTARALFD 90 (445)
Q Consensus 76 ~~~~g~~~~a~~~~~ 90 (445)
+.+.|+.++|.++|-
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 888888888888874
No 286
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=67.43 E-value=20 Score=26.77 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCChHHHHHHhccCCCCC---hhhHHHHHHHHHhcCC--HhHHHHHHHHHHHcCCCCCH
Q 047840 100 WTTMVDGYGKMGDFENARELFEKMPERN---AVSWSAIMAAYSRISD--FKEVLSLFRQMQEVGMKPNE 163 (445)
Q Consensus 100 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~p~~ 163 (445)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3455666666677777777777766542 2223334444444322 34566667666666654433
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=67.28 E-value=36 Score=27.00 Aligned_cols=50 Identities=14% Similarity=0.055 Sum_probs=22.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHhhcCCcHHHHHHHHHHhH
Q 047840 237 SGVAMNGDAKKSLELFDRMVKSGTQPTET---TFVAVLTTCTHAKMVRDGLNLFENMS 291 (445)
Q Consensus 237 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (445)
...+..|+.+-+. .+.+.|..++.. ..+ .+....+.|+.+-+.-+++.-.
T Consensus 182 ~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~~~ 234 (240)
T 3eu9_A 182 HWAVLAGNTTVIS----LLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEARQ 234 (240)
T ss_dssp HHHHHHTCHHHHH----HHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHhhh
Confidence 3444556655333 333445444322 111 2333345566665555555443
No 288
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.06 E-value=76 Score=28.26 Aligned_cols=265 Identities=11% Similarity=0.125 Sum_probs=129.7
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcC
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFV--VSSLLEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKM 110 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 110 (445)
.+...+..|+.+ .+. .+.+.|..|+... ..+.+...+..|+.+-+..+++..... +.... +.+...+..
T Consensus 17 ~L~~Aa~~g~~~-~v~----~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~ 90 (437)
T 1n11_A 17 PLHVASFMGHLP-IVK----NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARI 90 (437)
T ss_dssp HHHHHHHHTCHH-HHH----HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHH
T ss_pred HHHHHHHCCCHH-HHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHC
Confidence 344556777777 444 4455566555321 223455667789999988888765443 22222 334445667
Q ss_pred CChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 047840 111 GDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHS 187 (445)
Q Consensus 111 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 187 (445)
|+.+-+.-+++.-..+ +...++. +...+..|+.+-+..+++.-.... ..+....+ .+...+..|+.+- .+
T Consensus 91 g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t-~L~~A~~~g~~~~----v~ 163 (437)
T 1n11_A 91 GHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGHVETVLALLEKEASQA-CMTKKGFT-PLHVAAKYGKVRV----AE 163 (437)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCC-HHHHHHHTTCHHH----HH
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCc-CCCCCCCC-HHHHHHHcCCHHH----HH
Confidence 8888777777764433 2222222 334456777776665554321111 11111122 2333455666654 44
Q ss_pred HHHHcCCCCchhh--hhHHHHHHHccCChHHHHHHhhcCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047840 188 YAKRYHLEKNVIL--ATAVVDMYSKCGHVHSALSVFEGISNKDA---GAWNAMISGVAMNGDAKKSLELFDRMVKSGTQP 262 (445)
Q Consensus 188 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 262 (445)
.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++. ..++. +...+..|+.+-+.. +.+.|..+
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~----Ll~~g~~~ 238 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARS----LLQYGGSA 238 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHH----HHHTTCCT
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHH----HHHcCCCC
Confidence 4455565444321 12344556677888877777765443322 22222 334455666554443 44444433
Q ss_pred CH---HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHH
Q 047840 263 TE---TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL---EHYACVVDLLARAGMVEEAEKFIEE 325 (445)
Q Consensus 263 ~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 325 (445)
+. ...+.+. ..+..|..+-...+++ . +..++. ...+.| ...+..|+.+-+..+++.
T Consensus 239 ~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~----~-~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 239 NAESVQGVTPLH-LAAQEGHAEMVALLLS----K-QANGNLGNKSGLTPL-HLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp TCCCTTCCCHHH-HHHHTTCHHHHHHHHT----T-TCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHH
T ss_pred CCCCCCCCCHHH-HHHHCCCHHHHHHHHh----c-CCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhC
Confidence 32 1222232 2334566554433332 2 333321 222233 334456776655555554
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.31 E-value=42 Score=24.98 Aligned_cols=27 Identities=7% Similarity=0.231 Sum_probs=13.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHhccCCC
Q 047840 99 TWTTMVDGYGKMGDFENARELFEKMPE 125 (445)
Q Consensus 99 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 125 (445)
-|......+-..|++.+|.++|+.-.+
T Consensus 103 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 103 LYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444455555555555544443
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.19 E-value=62 Score=26.89 Aligned_cols=200 Identities=10% Similarity=0.068 Sum_probs=104.8
Q ss_pred HHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHHH
Q 047840 72 LLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEVL 148 (445)
Q Consensus 72 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 148 (445)
.+...+..|+.+-+..+++....++...-.+.+...+..|+.+-+..+++.-..+ +..-++.| ...+..|+.+-+.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~ 112 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTAL-YYAVDSGNMQTVK 112 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHH-HHHHHcCCHHHHH
Confidence 4455567899998888888754433222234455566778888887777754432 22223333 3345667766555
Q ss_pred HHHHHHHHcCCCCCH---HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-chhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 149 SLFRQMQEVGMKPNE---SGLVSVLTACAHLGAITQGLWVHSYAKRYHLEK-NVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 149 ~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
.+++. |..++. ..+.+.+...+..|+.+- .+.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-
T Consensus 113 ~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 113 LFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp HHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 55443 433332 121233444455666554 44444555333 2213334555667788888777777542
Q ss_pred CC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 047840 225 SN---KDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFEN 289 (445)
Q Consensus 225 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 289 (445)
.. .+..-++..+...+..|+. ++.+.+.+.|..|+.... .-...|+.+-+.-+++.
T Consensus 185 ad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~-----~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 185 TSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANL-----ENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTG-----GGGTTTCHHHHHHHHHH
T ss_pred CCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCCh-----hhhhcCCHHHHHHHHHc
Confidence 21 2222222222333445553 345556667777766542 22445666555555443
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=63.37 E-value=52 Score=25.80 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 047840 279 MVRDGLNLFENMSAVYGVEPQ-LEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGG 333 (445)
Q Consensus 279 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 333 (445)
...++..+|..|... |+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345666666666655 44333 3445555566666666666666666665555444
No 292
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=63.12 E-value=63 Score=26.63 Aligned_cols=60 Identities=12% Similarity=-0.018 Sum_probs=25.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 047840 298 PQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEM 364 (445)
Q Consensus 298 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 364 (445)
++..+-...+.++.+.|+......+...+.+ ++ +-...+.++...|. ..+...+.++.+.
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc
Confidence 3444444455555555543333233333321 22 12233444555554 3445555555443
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.45 E-value=45 Score=24.78 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCC--CCchhHHHHHHHHHHcCChHHHHHHHHHHHhcCCc
Q 047840 354 GNRVWRKLAEMGI--TDFSTHVLSYNIYKEAGWDMEANKVRKLISETGMK 401 (445)
Q Consensus 354 a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 401 (445)
..++|..|...+. ..+..|...+..+...|++.+|.++++.=.+.+-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 4555555554333 23334444555555555555555555544444333
No 294
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=61.58 E-value=35 Score=27.19 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=9.3
Q ss_pred HHHHccCChHHHHHHhhc
Q 047840 206 DMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~ 223 (445)
...+..|+.+-+..+++.
T Consensus 188 ~~A~~~~~~~~v~~Ll~~ 205 (241)
T 1k1a_A 188 HSASGRGLLPLVRTLVRS 205 (241)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455666555555543
No 295
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=59.01 E-value=66 Score=25.50 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=23.4
Q ss_pred HHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhcc
Q 047840 73 LEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEK 122 (445)
Q Consensus 73 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 122 (445)
+...+..|+.+-+..+++....+ +.... +.+...+..|+.+-+..+++.
T Consensus 48 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhC
Confidence 34445567777666666654332 21111 223333445555555555544
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.85 E-value=56 Score=24.67 Aligned_cols=47 Identities=4% Similarity=-0.057 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 047840 319 AEKFIEEKMGGLGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMG 365 (445)
Q Consensus 319 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 365 (445)
+.++|..|..+++- --+..|......+-..|++.+|.++|+..++..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555555433 234455555555666666666666666666544
No 297
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=58.76 E-value=76 Score=26.13 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhc
Q 047840 262 PTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMG 328 (445)
Q Consensus 262 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 328 (445)
++..+-...+.++.+.|+......+.. +... ++ .....+.++.+.|. .++...+..+..
T Consensus 204 ~~~~vR~~A~~aL~~~~~~~~~~~L~~-~l~d----~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 204 KNEEVRIEAIIGLSYRKDKRVLSVLCD-ELKK----NT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp SCHHHHHHHHHHHHHTTCGGGHHHHHH-HHTS----SS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCHhhHHHHHH-HhcC----cc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 344444445555555554332222222 2221 22 22234455555565 345555555543
No 298
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.75 E-value=72 Score=25.27 Aligned_cols=53 Identities=15% Similarity=0.051 Sum_probs=25.8
Q ss_pred HhhhcCCchhHHHHHHHHHHHhcCCCChhh--HHHHHHHHHhcCCHHHHHHHhccC
Q 047840 39 ACVILGPLENFGMFVHAHVVKFGFGEDPFV--VSSLLEFYSLVHKMGTARALFDKS 92 (445)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 92 (445)
..+..|+.+ ....+++...+.|..++... -.+.+...+..|+.+-+..+++..
T Consensus 15 ~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 15 IAVVQGNLP-AVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHTTCHH-HHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHH-HHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 344556666 55556555555554433221 112333444556666555555543
No 299
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.66 E-value=54 Score=26.56 Aligned_cols=22 Identities=0% Similarity=0.015 Sum_probs=11.9
Q ss_pred HHHhhcCCcHHHHHHHHHHhHH
Q 047840 271 LTTCTHAKMVRDGLNLFENMSA 292 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~ 292 (445)
++.+....++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4445555556666555555443
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=54.58 E-value=36 Score=24.48 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=32.6
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISNKD---AGAWNAMISGVAMNGD--AKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~ 261 (445)
..++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 446666777777777777777776542 1222333333333321 34556666666655543
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=53.91 E-value=1e+02 Score=26.16 Aligned_cols=61 Identities=10% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCc--HHHHHHHHHHhHHh
Q 047840 232 WNAMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKM--VRDGLNLFENMSAV 293 (445)
Q Consensus 232 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 293 (445)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+....++..+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 345666677777777777777766321111 12233334444444322 34455566665544
No 302
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.70 E-value=1.2e+02 Score=26.38 Aligned_cols=62 Identities=8% Similarity=0.092 Sum_probs=32.7
Q ss_pred HHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHHHhcCC
Q 047840 267 FVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGM--VEEAEKFIEEKMGGL 330 (445)
Q Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 330 (445)
...++.-|...++.++|.+.++++..- .+. ...+...+..++-+.++ .+....++..+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p-~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~g 283 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 283 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCT-TCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCC-cch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 455677777778888888888777521 111 12223333344433322 234555555555444
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.23 E-value=29 Score=25.83 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=33.0
Q ss_pred hHHHHHHHccCChHHHHHHhhcCCCCC---hhhHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 047840 202 TAVVDMYSKCGHVHSALSVFEGISNKD---AGAWNAMISGVAMNGD--AKKSLELFDRMVKSGTQ 261 (445)
Q Consensus 202 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~ 261 (445)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456666777777777777777776542 1223333333333222 34456666666655543
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=46.13 E-value=2.2e+02 Score=28.86 Aligned_cols=51 Identities=8% Similarity=0.152 Sum_probs=31.6
Q ss_pred HHHHHHcCCChHHHHHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 047840 103 MVDGYGKMGDFENARELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQM 154 (445)
Q Consensus 103 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 154 (445)
++..+...|.++-|.++..-+.. ++..--.+..+|...|++++|...|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555566666666665555543 3333345667777777777777777664
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=45.86 E-value=23 Score=28.29 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=21.7
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHhccCCCCChhhHHHHHH
Q 047840 96 DVVTWTTMVDGYGKMGDFENARELFEKMPERNAVSWSAIMA 136 (445)
Q Consensus 96 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 136 (445)
-..-|......+-..|++.+|..+|+.-.+........|..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 34445555556666666666666666555433333333333
No 306
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=45.36 E-value=1.4e+02 Score=25.40 Aligned_cols=129 Identities=9% Similarity=-0.019 Sum_probs=74.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhc---CC
Q 047840 239 VAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARA---GM 315 (445)
Q Consensus 239 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 315 (445)
+...|++++|+..|+..... ..+.......+.+++.+++....+ +....-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icrE--------Yilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR----------ITLLMVDDAEDEKLAHKILETARE--------YILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------HHTCCBCSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeeccHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcCccc
Confidence 35678999999998877543 001111112223333333333321 1111222222221 34
Q ss_pred hHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHH
Q 047840 316 VEEAEKFIEEKMGGLGGGDA--NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRK 393 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 393 (445)
..+..++-.-+...++.|.. -+...-+....+.+++..|-.+.+++++.+|... ..+.|.+++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~ 251 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKN 251 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHH
Confidence 45566666666666666654 4567777888899999999999999999998532 2345666666
Q ss_pred HHHhcC
Q 047840 394 LISETG 399 (445)
Q Consensus 394 ~m~~~~ 399 (445)
.-.+.+
T Consensus 252 ~ce~~~ 257 (325)
T 3mv2_A 252 KADSMA 257 (325)
T ss_dssp HHHTSC
T ss_pred HHhcCC
Confidence 665443
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.96 E-value=1.9e+02 Score=26.69 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=38.5
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhcCCCCCh-hh------H-HHHHHHHHhcCChHHHHHHHHHHHHc
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEGISNKDA-GA------W-NAMISGVAMNGDAKKSLELFDRMVKS 258 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~------~-~~l~~~~~~~~~~~~a~~~~~~m~~~ 258 (445)
..++|.+++.|...+.++.|..+..+..-|.. .. | .-+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667777777777888888877776654421 11 1 12334556677888888777776554
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.70 E-value=2.6e+02 Score=28.25 Aligned_cols=129 Identities=11% Similarity=0.034 Sum_probs=72.6
Q ss_pred HHHHHHHhcCCHHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHhccCCCC---ChhhHHHHHHHHHhcCCHhHH
Q 047840 71 SLLEFYSLVHKMGTARALFDKSPDRDVVTWTTMVDGYGKMGDFENARELFEKMPER---NAVSWSAIMAAYSRISDFKEV 147 (445)
Q Consensus 71 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 147 (445)
.++..+...|.++-|.++...... ++..--.+..+|...|++++|..+|++.... +...... ....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc----------hhhh
Confidence 366777788888888877666554 4444345778889999999999999987531 1000000 0001
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCch----hhhhHHHHHHHccC
Q 047840 148 LSLFRQMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNV----ILATAVVDMYSKCG 212 (445)
Q Consensus 148 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 212 (445)
..++... +. ......-|..++..+-+.+.++.+.++-+.+++.-.+.|. ..+..+.++.+..|
T Consensus 884 ~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1111110 00 0112235666777777777777777777777654322222 24555555555443
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=44.41 E-value=1.5e+02 Score=25.47 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=7.8
Q ss_pred HhcCCHhHHHHHHHHH
Q 047840 139 SRISDFKEVLSLFRQM 154 (445)
Q Consensus 139 ~~~~~~~~a~~~~~~~ 154 (445)
+..|+.+-+..+++..
T Consensus 92 ~~~g~~~~v~~Ll~~~ 107 (364)
T 3ljn_A 92 VMANKTDLVVALVEGA 107 (364)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhc
Confidence 3445555555554443
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.76 E-value=42 Score=26.85 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 047840 317 EEAEKFIEEKMGGLGG-GDANVWGALLSACRIYGKIEVGNRVWRKLAEMGI 366 (445)
Q Consensus 317 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 366 (445)
+++..+|..|..+++- --...|......+...|++.+|.++|+..++..-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4666777777776654 3456677777788888888888888888877543
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.53 E-value=1e+02 Score=28.50 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCCh--hHHH-HHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 265 TTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQL--EHYA-CVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 265 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
..++.+++.|...+.++.|..+..+..--....++. ..|. .+...+.-.+++.+|.+.+.......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 456667777777777777777777664100000111 1111 22344555677777777777665543
No 312
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=43.46 E-value=33 Score=27.83 Aligned_cols=114 Identities=12% Similarity=-0.084 Sum_probs=61.5
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCCCc-------ccHHHHHHHhhhc---CCchhHHHHHHHHHHHhcCCC----------
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEPNN-------YTFPPLIKACVIL---GPLENFGMFVHAHVVKFGFGE---------- 64 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~---------- 64 (445)
.++.|+.+....+++.+.+.|..++. .-.+.+..+ +.. |+.+ .+..+++.-...+...
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~-~v~~Ll~~g~~~~~~~~~~~~~~~~~ 86 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNA-CIMPLLQIDKDSGNPKPLVNAQCTDE 86 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCT-THHHHHHHHHHTTCSSCGGGCCCCST
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHH-HHHHHHhcCCcccchhhhcccccccc
Confidence 45678888887888887777765554 223334333 344 7777 6666665443322110
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHhccCCCCChhh---------------HHHHHHHHHcCCChHHHHHHhc
Q 047840 65 DPFVVSSLLEFYSLVHKMGTARALFDKSPDRDVVT---------------WTTMVDGYGKMGDFENARELFE 121 (445)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~A~~~~~ 121 (445)
|..-. +.+...+..|+.+-+..+++....++... -.+.+...+..|+.+-+..+++
T Consensus 87 d~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 87 FYQGH-SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp TTTTC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCC-CHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11122 23444556788888877777654432211 1223333445566666666665
No 313
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=43.39 E-value=30 Score=20.78 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHhcCCCCCcccHHHHHHHh-hhcCCc
Q 047840 11 PKLSVFCYLDMLDMGFEPNNYTFPPLIKAC-VILGPL 46 (445)
Q Consensus 11 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~ 46 (445)
.++|.+.|.+|++..-.++..||.-.++.+ +.-.++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY 38 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRY 38 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCcc
Confidence 467788888877654445566788888777 554433
No 314
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=40.95 E-value=1.3e+02 Score=23.60 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=11.0
Q ss_pred HHHHhcCCHHHHHHHhccCC
Q 047840 74 EFYSLVHKMGTARALFDKSP 93 (445)
Q Consensus 74 ~~~~~~g~~~~a~~~~~~~~ 93 (445)
...+..|+.+-+..+++...
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~ 99 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLARGA 99 (232)
T ss_dssp HHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHhCCC
Confidence 33445566666666665543
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.68 E-value=36 Score=22.94 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=28.8
Q ss_pred CChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHH
Q 047840 212 GHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSL 249 (445)
Q Consensus 212 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 249 (445)
...+.|.+++..+...++.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887766655444
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=40.65 E-value=81 Score=24.06 Aligned_cols=38 Identities=5% Similarity=-0.032 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCCchhhh--hHHHHHHHccCChHHHHHH
Q 047840 183 LWVHSYAKRYHLEKNVILA--TAVVDMYSKCGHVHSALSV 220 (445)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~ 220 (445)
..+.+.+.+.|..++.... .+-+...++.|+.+-+.-+
T Consensus 158 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 3444555555544432211 1223334445555544443
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.64 E-value=1.8e+02 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhccCCCC
Q 047840 70 SSLLEFYSLVHKMGTARALFDKSPDR 95 (445)
Q Consensus 70 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 95 (445)
..++.=|...|+.++|.+.++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34455555556666666666555544
No 318
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=40.50 E-value=70 Score=26.17 Aligned_cols=88 Identities=10% Similarity=-0.115 Sum_probs=45.8
Q ss_pred hhhcCCchHHHHHHHHHHhcCCCC-------CcccHHHHHHHhh--hcCCchhHHHHHHHHHHHhc---------CC-CC
Q 047840 5 YMQANFPKLSVFCYLDMLDMGFEP-------NNYTFPPLIKACV--ILGPLENFGMFVHAHVVKFG---------FG-ED 65 (445)
Q Consensus 5 ~~~~g~~~~A~~~~~~m~~~~~~p-------~~~~~~~ll~~~~--~~~~~~~~a~~~~~~~~~~~---------~~-~~ 65 (445)
.++.|+.+....+++...+.+... +..-++.|..++. +.|+.+ .+..+++.-...+ .. .+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~-~v~~Ll~~ga~~~~~~~~i~~~~~~~d 98 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQND-TIALLLDVARKTDSLKQFVNASYTDSY 98 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCH-HHHHHHHHHHHTTCHHHHHTCCCCSTT
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChH-HHHHHHHhhccccchhHHhhccccccc
Confidence 456788888877887766655332 2333444555543 347776 5555555432211 00 11
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHhccCCC
Q 047840 66 PFVVSSLLEFYSLVHKMGTARALFDKSPD 94 (445)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 94 (445)
..-.+ .+...+..|+.+-+..+++....
T Consensus 99 ~~g~t-pL~~A~~~g~~~~v~~Ll~~ga~ 126 (273)
T 2pnn_A 99 YKGQT-ALHIAIERRNMTLVTLLVENGAD 126 (273)
T ss_dssp TTTCC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCC-HHHHHHHcCCHHHHHHHHHCCCC
Confidence 12222 23334556777777777665443
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.97 E-value=1.1e+02 Score=26.08 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=18.0
Q ss_pred hhchhhcCCchHHHHHHHHHH
Q 047840 2 IRGYMQANFPKLSVFCYLDML 22 (445)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~m~ 22 (445)
|.-|...|+.++|...++++.
T Consensus 10 i~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 10 IQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHcCCCHHHHHHHHHHhC
Confidence 667888999999999999864
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.51 E-value=86 Score=23.54 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=40.8
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHcCCh
Q 047840 281 RDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGG--LGGGDANVWGALLSACRIYGKI 351 (445)
Q Consensus 281 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 351 (445)
+.+.+-+.+..+..|++++.. -..+++.+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444444444447777553 234556666666677777777777655 4445555555555666666644
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.82 E-value=1.8e+02 Score=26.80 Aligned_cols=77 Identities=8% Similarity=-0.067 Sum_probs=57.0
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHc
Q 047840 269 AVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIY 348 (445)
Q Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (445)
.+.+.......++.|...|..+... .+.+...|+.|.-.....|+.-+|.-.|-+.+... .|-..+...+...+.+.
T Consensus 157 ~LGDL~RY~~~~~~A~~~Y~~A~~~--~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHh--CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHH
Confidence 3334444456788999999999864 34457788988888888888888888877776655 68888888888877653
No 322
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=37.68 E-value=2.8e+02 Score=26.58 Aligned_cols=17 Identities=12% Similarity=-0.197 Sum_probs=14.1
Q ss_pred HHHcCChHHHHHHHHHH
Q 047840 379 YKEAGWDMEANKVRKLI 395 (445)
Q Consensus 379 ~~~~g~~~~A~~~~~~m 395 (445)
+...|+|+.|.+.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 47899999999888764
No 323
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.61 E-value=1.5e+02 Score=27.22 Aligned_cols=74 Identities=7% Similarity=-0.026 Sum_probs=45.1
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 047840 307 VDLLARAGMVEEAEKFIEEKMGGLGGGDANVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKE 381 (445)
Q Consensus 307 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (445)
.+...-...++.|...|....... |.+...||.|.-.....|+.-+|.-.|-+.+....+.+.+...+...+.+
T Consensus 159 GDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 159 GDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 333344455667777777666554 45556677777666666666666666666666555556566666555543
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=36.83 E-value=1.6e+02 Score=23.40 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHHhhCCCCCh-hHH-----HHHHHHHHhcCChHHHHHHHHHHhcC
Q 047840 280 VRDGLNLFENMSAVYGVEPQL-EHY-----ACVVDLLARAGMVEEAEKFIEEKMGG 329 (445)
Q Consensus 280 ~~~a~~~~~~~~~~~~~~~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~ 329 (445)
++.|..+|+.+.+...+..+. ... -..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 566777777777653221111 111 12234577888888888888887654
No 325
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=36.28 E-value=2e+02 Score=24.33 Aligned_cols=52 Identities=10% Similarity=-0.033 Sum_probs=24.0
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHhcCCCChhh---HHHHHHHHHhcCCHHHHHHHhccC
Q 047840 36 LIKACVILGPLENFGMFVHAHVVKFGFGEDPFV---VSSLLEFYSLVHKMGTARALFDKS 92 (445)
Q Consensus 36 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~ 92 (445)
.+...++.|+.+ .+..+ ++.|..++... -.+-+...+..|+.+-+.-+++..
T Consensus 28 ~L~~Av~~g~~~-~V~~L----L~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g 82 (337)
T 4g8k_A 28 LLIKAVQNEDVD-LVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 82 (337)
T ss_dssp HHHHHHHTTCHH-HHHHH----HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHH-HHHHH----HHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence 333445566665 33333 34454443221 112233344566666666666543
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=36.27 E-value=1.1e+02 Score=22.39 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=32.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4455666554332 33344444455556666776666665444555555555666655543
No 327
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.79 E-value=2.1e+02 Score=24.43 Aligned_cols=67 Identities=10% Similarity=-0.063 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCChHHHHHHHHHHH
Q 047840 319 AEKFIEEKMGGLGGGDA--NVWGALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGWDMEANKVRKLIS 396 (445)
Q Consensus 319 A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 396 (445)
..++-.-+...++.|.. -+...-+....+.+++..|-.+-+++++.+|... ..+.|.+++..-.
T Consensus 180 ~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce 245 (320)
T 3mkr_B 180 ICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACE 245 (320)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHh
Confidence 34444445555666654 3566777788899999999999999999887522 2244666666665
Q ss_pred hcC
Q 047840 397 ETG 399 (445)
Q Consensus 397 ~~~ 399 (445)
+.+
T Consensus 246 ~~~ 248 (320)
T 3mkr_B 246 KNP 248 (320)
T ss_dssp HSC
T ss_pred cCC
Confidence 443
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=35.13 E-value=46 Score=22.42 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=15.2
Q ss_pred hHHHHHHhccCCCCChhhHHHHHHHHHhcCCHh
Q 047840 113 FENARELFEKMPERNAVSWSAIMAAYSRISDFK 145 (445)
Q Consensus 113 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 145 (445)
.+.|.++++.++.+...+|..++.++...|+..
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 444444444444444444444444444444433
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.51 E-value=1.1e+02 Score=22.41 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=41.7
Q ss_pred HHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 19 LDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 19 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+.+.+.|++++..- ..++..+...+ .- .|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~-h~-ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE-HA-TPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS-SB-CHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC-CC-CHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 44556788777653 34555555556 56 7999999998887777777666667777777643
No 330
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.51 E-value=2.4e+02 Score=24.85 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=31.5
Q ss_pred HHHhhcCCcHHHHHHHHHHhHHhh----C-----------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHh
Q 047840 271 LTTCTHAKMVRDGLNLFENMSAVY----G-----------VEPQLEHYACVVDLLARAGMVEEAEKFIEEKM 327 (445)
Q Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~----~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 327 (445)
+..+....+.+++.+.++.+.... + ..+-......+...|...|+.++|..++++..
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444556667777777777654310 0 01112233445556666777777777776653
No 331
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=34.37 E-value=30 Score=28.21 Aligned_cols=54 Identities=11% Similarity=-0.108 Sum_probs=33.6
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHhcCCCChhh-------HHHHHHHHH--hcCCHHHHHHHhcc
Q 047840 37 IKACVILGPLENFGMFVHAHVVKFGFGEDPFV-------VSSLLEFYS--LVHKMGTARALFDK 91 (445)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~a~~~~~~ 91 (445)
+...++.|+.+ ....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 9 L~~A~~~g~~~-~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 9 LFDIVSRGSPD-GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHTCGG-GGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHhCCHH-HHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 44456778888 78888888777776666333 233333322 55777777666654
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=34.26 E-value=1.7e+02 Score=22.94 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=40.4
Q ss_pred HHHHHHHH---hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----hhHHHHHHHHHHHcCCC
Q 047840 132 SAIMAAYS---RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA-----ITQGLWVHSYAKRYHLE 195 (445)
Q Consensus 132 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 195 (445)
--+|+++. +..+.+.|+-.+-+|++.| .|....-..++.+.-..|. +..|...++.....|.|
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 33455554 4578999999999999988 7766666666666655553 23344555555556643
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.98 E-value=1.4e+02 Score=21.95 Aligned_cols=62 Identities=8% Similarity=-0.001 Sum_probs=43.3
Q ss_pred HHHHhcCCCCCcccHHHHHHHhhhcC-CchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 19 LDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 19 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+.+.+.|++++..-. .++..+...+ ..- .|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~-sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHI-SAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCC-CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677877776643 4555555555 566 6999999998887777777766667777777754
No 334
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.89 E-value=1.3e+02 Score=21.59 Aligned_cols=62 Identities=8% Similarity=-0.047 Sum_probs=42.0
Q ss_pred HHHHhcCCCCCcccHHHHHHHhhhcC-CchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 19 LDMLDMGFEPNNYTFPPLIKACVILG-PLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 19 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+.+.+.|++++..- ..++..+...+ ..- .|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~~-sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPR-VKILQMLDSAEQRHM-SAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHCC-CCSB-CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHH-HHHHHHHHhCCCCCC-CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 34566787777664 34555565555 566 7999999998887777777766667777776644
No 335
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=32.81 E-value=85 Score=22.68 Aligned_cols=15 Identities=0% Similarity=-0.409 Sum_probs=8.2
Q ss_pred hhcCCchHHHHHHHH
Q 047840 6 MQANFPKLSVFCYLD 20 (445)
Q Consensus 6 ~~~g~~~~A~~~~~~ 20 (445)
++.|+.+....+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 445565555555554
No 336
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=32.43 E-value=1e+02 Score=24.38 Aligned_cols=53 Identities=19% Similarity=0.129 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcCCCCCCHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q 047840 316 VEEAEKFIEEKMGGLGGGDAN-------VWGALLSACRIYGKIEVGNRVWRKLAEMGITD 368 (445)
Q Consensus 316 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 368 (445)
++.|+.+|+.+.+....++.. .-...+..|.+.|.+++|.+++++.....+.+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~ 147 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT 147 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc
Confidence 356777777765443112211 12234557899999999999999987765443
No 337
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.36 E-value=1.6e+02 Score=25.28 Aligned_cols=58 Identities=16% Similarity=0.078 Sum_probs=26.8
Q ss_pred HHHHccCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047840 206 DMYSKCGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKKSLELFDRMVKSGTQPT 263 (445)
Q Consensus 206 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 263 (445)
...+..|+.+-+..+++.-...+...-.+.+...+..|+.+-+..+++.....|..|+
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 3444556665555555543332221111123334455666666666655444444433
No 338
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.96 E-value=1.8e+02 Score=22.67 Aligned_cols=17 Identities=18% Similarity=0.302 Sum_probs=9.1
Q ss_pred HHHhcCCHHHHHHHhcc
Q 047840 75 FYSLVHKMGTARALFDK 91 (445)
Q Consensus 75 ~~~~~g~~~~a~~~~~~ 91 (445)
..+..|+.+-+..+++.
T Consensus 43 ~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 43 IAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445666655555543
No 339
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=31.15 E-value=1.5e+02 Score=21.53 Aligned_cols=62 Identities=6% Similarity=-0.146 Sum_probs=42.5
Q ss_pred HHHHhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 19 LDMLDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 19 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
+.+.+.|++++..- ..++..+...+..- .|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~-sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHP-TADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCC-CHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCC-CHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44567787777654 34555555556666 7899999988877777777766667777777644
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.69 E-value=1.7e+02 Score=21.89 Aligned_cols=70 Identities=7% Similarity=-0.049 Sum_probs=48.0
Q ss_pred chHHHHHHHHH-HhcCCCCCcccHHHHHHHhhhcCCchhHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhcCCH
Q 047840 11 PKLSVFCYLDM-LDMGFEPNNYTFPPLIKACVILGPLENFGMFVHAHVVKF--GFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 11 ~~~A~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
.+.+++-+++. .+.|++++..- ..++..+...+..- .|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~-sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHY-TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCB-CHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCC-CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45556555554 45688776653 45667777776777 799999999887 7777776655667777777743
No 341
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.01 E-value=1.1e+02 Score=19.44 Aligned_cols=60 Identities=10% Similarity=0.086 Sum_probs=36.9
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 153 QMQEVGMKPNESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 153 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..+....+..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3556677766544 34555555554 556677788888776655566666666666666553
No 342
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.18 E-value=1.7e+02 Score=21.46 Aligned_cols=61 Identities=8% Similarity=0.127 Sum_probs=37.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 153 QMQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 153 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3556777765443 344555555566777888888888776556665655566666666643
No 343
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.18 E-value=1.7e+02 Score=21.46 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=40.9
Q ss_pred HHHhccCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 047840 117 RELFEKMPERNAVSWSAIMAAYSRISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGAI 179 (445)
Q Consensus 117 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 179 (445)
.+.++.-.-+.+..-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 333443333445555667777777777888999999998876666777766666666655543
No 344
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.15 E-value=1.8e+02 Score=21.80 Aligned_cols=54 Identities=15% Similarity=0.229 Sum_probs=41.0
Q ss_pred HHhcCChHHHHHHHHHHhcCCCCC--CHHHHHHHHH-H-----HHHcCChHHHHHHHHHHHH
Q 047840 310 LARAGMVEEAEKFIEEKMGGLGGG--DANVWGALLS-A-----CRIYGKIEVGNRVWRKLAE 363 (445)
Q Consensus 310 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~~~~ 363 (445)
+.+.|++-+|-++++.+=...-.+ +...|..||+ . ..+.|+...|..++.+...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345699999999999876554345 5567777777 2 2467999999999999987
No 345
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=29.13 E-value=2.1e+02 Score=22.39 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=31.2
Q ss_pred HHHHHHH---hcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 047840 133 AIMAAYS---RISDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLG 177 (445)
Q Consensus 133 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 177 (445)
-+|+++. +..+.+.|+-.+-+|++.|-.|....-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455553 45789999999999999887776666566666554444
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.41 E-value=1.8e+02 Score=21.27 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=39.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCCh
Q 047840 153 QMQEVGMKPNESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGHV 214 (445)
Q Consensus 153 ~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 214 (445)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 45567777765543 3455555555 6677888888888876666666665566777766644
No 347
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=27.07 E-value=1.7e+02 Score=20.90 Aligned_cols=59 Identities=10% Similarity=0.062 Sum_probs=35.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 154 MQEVGMKPNESGLVSVLTACAHLG-AITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+.+.|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4556777665443 3444555555 566788888888777655565555555566666554
No 348
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.86 E-value=1.8e+02 Score=27.90 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=38.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHcCC
Q 047840 340 ALLSACRIYGKIEVGNRVWRKLAEMGITDFSTHVLSYNIYKEAGW 384 (445)
Q Consensus 340 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 384 (445)
...+.....|++..|.++.+.++..+|++..+-...+.+|.+.|.
T Consensus 454 ~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 454 EQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 344556688999999999999999999999888889998888774
No 349
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.98 E-value=1.4e+02 Score=19.59 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.1
Q ss_pred cCChHHHHHHhhcCCCCChhhHHHHHHHHHhcCChHH
Q 047840 211 CGHVHSALSVFEGISNKDAGAWNAMISGVAMNGDAKK 247 (445)
Q Consensus 211 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 247 (445)
....++|..+++.+...+..+|..++.++...+...-
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 4566777777777777777777777777777665443
No 350
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.47 E-value=2.4e+02 Score=21.98 Aligned_cols=50 Identities=10% Similarity=0.017 Sum_probs=26.3
Q ss_pred HHHHHhcCCHHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHhccC
Q 047840 73 LEFYSLVHKMGTARALFDKSPDR---DVVTWTTMVDGYGKMGDFENARELFEKM 123 (445)
Q Consensus 73 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 123 (445)
+...+..|+.+-+..+++....+ +...++ .+...+..|+.+-+..+++.-
T Consensus 15 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRT-PLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHcCcHHHHHHHHHcCCCcCccCCCCCC-HHHHHHHhCCHHHHHHHHhCC
Confidence 33445566666666666554332 222222 334445567777777776654
No 351
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=25.07 E-value=3.7e+02 Score=23.97 Aligned_cols=67 Identities=10% Similarity=-0.088 Sum_probs=44.7
Q ss_pred HHHHHHHHHH-----hCCCCchhHHHHHHHHHHcCChHHHHHHHHHHHhc-CCccCCcccEEEECCeEeEEecCCCCcch
Q 047840 354 GNRVWRKLAE-----MGITDFSTHVLSYNIYKEAGWDMEANKVRKLISET-GMKKKPGCSVIEVNGVVEEFLAGDNRHAQ 427 (445)
Q Consensus 354 a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (445)
++.+|.+++. .+-.+...|..++..+.+.+++.+|.+.+....+- +. .+-..+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~---------------------YNY~re 356 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQD---------------------YNYCRE 356 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------------SCCCGG
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHH---------------------cCCCcc
Confidence 4555666554 22347778889999999999999999988776532 11 012234
Q ss_pred hhHHHHHHHHHHhc
Q 047840 428 AGEIYRVIHSFLKM 441 (445)
Q Consensus 428 ~~~~~~~~~~~~~~ 441 (445)
-+|||+.+-.+-+.
T Consensus 357 DeEIYKEf~eIAne 370 (550)
T 3u84_A 357 DEEIYKEFFEVAND 370 (550)
T ss_dssp GHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 68888887766543
No 352
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.31 E-value=1.2e+02 Score=21.62 Aligned_cols=44 Identities=18% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcCC
Q 047840 235 MISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTHAK 278 (445)
Q Consensus 235 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 278 (445)
++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44445555556667777777766655555555555555555444
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=24.08 E-value=4.1e+02 Score=24.16 Aligned_cols=107 Identities=8% Similarity=0.028 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhcCCcHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 047840 251 LFDRMVKSGTQPTETTFVAVLTTCTHAKMVRDGLNLFENMSAVYGVEPQLEHYACVVDLLARAGMVEEAEKFIEEKMGGL 330 (445)
Q Consensus 251 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 330 (445)
.++-..+.|.+--...|..-...+...|++++|..+--...+ |+--+..|.+.+-.+=...|+..-.+.+|..+.+.|
T Consensus 348 A~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 348 ALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047840 331 GGGDANVWGALLSACRIYGKIEVGNRVWRK 360 (445)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 360 (445)
+.+..--.-+++.-...|+.+-....+.+
T Consensus 426 -~Ln~~ESlEl~r~vL~q~r~~llekWl~e 454 (494)
T 1bpo_A 426 -QLNKYESLELCRPVLQQGRKQLLEKWLKE 454 (494)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -ccchHHhhHHhHHHHhccHHHHHHHHHhc
No 354
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.88 E-value=2.6e+02 Score=21.86 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=19.0
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047840 241 MNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTC 274 (445)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 274 (445)
+-++++.|+-++-+|.+.| .|....-..++.+.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 3566777777777777776 55444434444333
No 355
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=23.75 E-value=1.2e+02 Score=23.63 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=9.4
Q ss_pred HHHhcCChHHHHHHHHHH
Q 047840 309 LLARAGMVEEAEKFIEEK 326 (445)
Q Consensus 309 ~~~~~g~~~~A~~~~~~~ 326 (445)
.|.+.|.+++|.+++++.
T Consensus 126 VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHH
Confidence 344555555555555554
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.15 E-value=1.7e+02 Score=20.73 Aligned_cols=47 Identities=11% Similarity=-0.020 Sum_probs=31.8
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
.++..+...+..- .|.++++.+.+.+...+..|.-..++.+...|-+
T Consensus 15 ~Il~~l~~~~~~~-sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFR-SAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3555555556566 6888888888877666766666667777776643
No 357
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.12 E-value=2e+02 Score=20.87 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=29.0
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCchhhhhHHHHHHHccCC
Q 047840 154 MQEVGMKPNESGLVSVLTACAHLGAITQGLWVHSYAKRYHLEKNVILATAVVDMYSKCGH 213 (445)
Q Consensus 154 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 213 (445)
+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 10 L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445555554332 2333333334 45566666666665544455444445555555554
No 358
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=23.10 E-value=2.8e+02 Score=21.89 Aligned_cols=97 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHhc---CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-----hhHHHHHHHHHHHcCCCCc
Q 047840 126 RNAVSWSAIMAAYSRI---SDFKEVLSLFRQMQEVGMKPNESGLVSVLTACAHLGA-----ITQGLWVHSYAKRYHLEKN 197 (445)
Q Consensus 126 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 197 (445)
.+-..+--+|+++.|+ .+.+.|+-.+-+|++.|-.|....-..++.+.-..|. +..|...++.....|.|--
T Consensus 30 k~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 30 KNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred CCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Q ss_pred hhhhhHHHHHHHccCChHHHHHHhhc
Q 047840 198 VILATAVVDMYSKCGHVHSALSVFEG 223 (445)
Q Consensus 198 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 223 (445)
.......+-.++.+-+-..+ ..++.
T Consensus 110 ~i~LaqaviyLA~APKSNs~-~A~~~ 134 (213)
T 3ctd_A 110 LFFLSQASLYLAISPKSNST-KSIFK 134 (213)
T ss_dssp HHHHHHHHHHHHHSCCCCGG-GHHHH
T ss_pred HHHHHHHHHHHHcCCccHHH-HHHHH
No 359
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.01 E-value=74 Score=19.09 Aligned_cols=25 Identities=12% Similarity=-0.038 Sum_probs=17.0
Q ss_pred HHcCChHHHHHHHHHHHhcCCccCC
Q 047840 380 KEAGWDMEANKVRKLISETGMKKKP 404 (445)
Q Consensus 380 ~~~g~~~~A~~~~~~m~~~~~~~~~ 404 (445)
...|+.+.|...+-.|...+..|++
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 4456777777777777766666654
No 360
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.56 E-value=3.7e+02 Score=23.05 Aligned_cols=25 Identities=12% Similarity=0.360 Sum_probs=14.9
Q ss_pred HHHHHHHccCChHHHHHHhhcCCCC
Q 047840 203 AVVDMYSKCGHVHSALSVFEGISNK 227 (445)
Q Consensus 203 ~l~~~~~~~g~~~~a~~~~~~~~~~ 227 (445)
.++.-|...|+.++|...++++..|
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 3555566666666666666666544
No 361
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=22.50 E-value=1.6e+02 Score=21.21 Aligned_cols=47 Identities=11% Similarity=-0.042 Sum_probs=33.5
Q ss_pred HHHHHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCCH
Q 047840 35 PLIKACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHKM 82 (445)
Q Consensus 35 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (445)
.++..+...+..- .|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~-sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFR-SAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4566666666666 7888998888877777777666667777777654
No 362
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.00 E-value=3.3e+02 Score=22.35 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=39.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-CCcHHHHHHHHHHhHH
Q 047840 234 AMISGVAMNGDAKKSLELFDRMVKSGTQPTETTFVAVLTTCTH-AKMVRDGLNLFENMSA 292 (445)
Q Consensus 234 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 292 (445)
-++...-+.+++++..+.++++...+...+..--+.|-.+|-. .|.-..+++++..+.+
T Consensus 36 ~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieq 95 (261)
T 3ubw_A 36 YQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 95 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHH
Confidence 3455567788999999988888887777777666666555532 2444556666665554
No 363
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.09 E-value=4e+02 Score=22.58 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCCchhhhhHHHHHHHccCChHHHHHHhhcC
Q 047840 184 WVHSYAKRYHLEKNVILATAVVDMYSKCGHVHSALSVFEGI 224 (445)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 224 (445)
++++.+.+.|+.|...++.-++..+.+.=.++.+.++++.+
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 45555666666666666666666666665666666666654
No 364
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.01 E-value=4e+02 Score=22.57 Aligned_cols=129 Identities=9% Similarity=0.091 Sum_probs=77.1
Q ss_pred CchHHHHHHHHHHhc-C----CCCCcccHHHHH---HHhhhcCCchhHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 047840 10 FPKLSVFCYLDMLDM-G----FEPNNYTFPPLI---KACVILGPLENFGMFVHAHVVKFGFGEDPFVVSSLLEFYSLVHK 81 (445)
Q Consensus 10 ~~~~A~~~~~~m~~~-~----~~p~~~~~~~ll---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (445)
+-++|...|..+... + ..|+.......+ ..+.+.-+ -.++..+.+.|+.|..+++.-++..+.+.=.
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~-----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp 238 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH-----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFP 238 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC-----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSC
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCC
Confidence 346688888877643 2 334443322222 22222222 3477777888999888888888888888888
Q ss_pred HHHHHHHhccCCC--CChhhHHH--HHH----HHHcCCChHHHHHHhcc-CCCCChhhHHHHHHHHHhcCC
Q 047840 82 MGTARALFDKSPD--RDVVTWTT--MVD----GYGKMGDFENARELFEK-MPERNAVSWSAIMAAYSRISD 143 (445)
Q Consensus 82 ~~~a~~~~~~~~~--~~~~~~~~--l~~----~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 143 (445)
++.+.++|+.... +....+.+ ++. ...+..++++....++. ++..+......++.-.....-
T Consensus 239 ~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 239 LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHhCCc
Confidence 9999999886543 22222221 221 22345688999999987 444444555556654444443
Done!