BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047843
(648 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 180/342 (52%), Gaps = 70/342 (20%)
Query: 190 NIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARK---EGRKV---FQFNHV 239
NI+V R RP ET+ N+I + E + VI+DP + K + +KV F F+ V
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIR-MDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 240 FGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM---------------- 282
+ T+ +F+ + +PLI +V++G+N IFAYGQTG+GKT TM
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 283 ---------------------------IRSCASEN-----------GLNLPDATMHSVKS 304
IR N G+ + +MH V +
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIYVDGLSMHRVTT 183
Query: 305 TADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT--SGSILR-SCLHLVDLA 361
A++ LM G NR V++T +N+ SSRSHS+ + + + + ++R L+LVDLA
Sbjct: 184 AAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLA 243
Query: 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGR 421
GSER K+ TG+ L E IN SLS LG VI+ L + +HIPYR+SKLT LLQDSLGG
Sbjct: 244 GSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGN 303
Query: 422 AKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKE 463
+KTLM A++SP + ET+STL++A R ++ R+N++
Sbjct: 304 SKTLMCANISPASTNYDETMSTLRYADRAKQIK-NKPRINED 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 120/352 (34%), Positives = 174/352 (49%), Gaps = 85/352 (24%)
Query: 185 QDLRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARK---EGRKV---- 233
+DL +++V RVRP E V+ + D +++ DP + G+K
Sbjct: 6 EDLCHHMKVVVRVRPENTKEKAAGFHKVVHVV--DKHILVFDPKQEEVSFFHGKKTTNQN 63
Query: 234 ----------FQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
F F+ VF T+TQ +VF+ T +P++RS ++GYN + AYG TG+GKTHTM
Sbjct: 64 VIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123
Query: 283 IRS--------------------------CAS---------------------------- 288
+ S C++
Sbjct: 124 LGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDT 183
Query: 289 ENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSG 348
+ G+ + T+H KS+ ++L L+ G NR T +N SSRSH+V I++ +D +
Sbjct: 184 QKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA 243
Query: 349 SILRSC----LHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA---QKNS 401
SI ++ + L+DLAGSER S G R E IN+SL LG+VI ALA +KN
Sbjct: 244 SINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQ 303
Query: 402 HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
HIPYRNSKLT LL+DSLGG +T+M A VSP F+ +T +TLK+A R +
Sbjct: 304 HIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 116/176 (65%), Gaps = 4/176 (2%)
Query: 283 IRSCASENG-LNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV 341
IR C +G L +P T V+S D+ ++ + G NR T +N SSRSH++L + V
Sbjct: 156 IRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTV 215
Query: 342 HGKDTSGSILRSC--LHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK 399
G D S + LR+ L+LVDLAGSERV KS G RL+EAQ+INKSLS LGDVI AL +
Sbjct: 216 RGVDCS-TGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR 274
Query: 400 NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVEL 455
H+P+RNSKLT LLQDSL G +KTLM VSP ET+ +LKFA+RV +VEL
Sbjct: 275 QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 12/112 (10%)
Query: 188 RGNIRVYCRVRPSFRA-----ETKNVIEFIGEDGSLVILDPLKARKEGRKV-FQFNHVFG 241
+GNIRV RVRP + E N + F +D S++ L +G+ V F+ + VF
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHL-----LHKGKPVSFELDKVFS 57
Query: 242 PTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLN 293
P A+Q DVF++ Q L+ S +DG+NVCIFAYGQTG+GKT+TM A G+N
Sbjct: 58 PQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTM-EGTAENPGIN 108
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%), Gaps = 4/141 (2%)
Query: 319 RAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLK 377
R+ +STA N SSRSHS+ IH+ G + +G+ L+LVDLAGSER++ S+V GDRL+
Sbjct: 214 RSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR 273
Query: 378 EAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEV 434
E Q INKSLSCLGDVI AL Q +S HIP+RNSKLT LLQ SL G +KTLMF ++SP
Sbjct: 274 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 333
Query: 435 DFFGETVSTLKFAQRVSTVEL 455
ET+++L+FA +V++ L
Sbjct: 334 SHINETLNSLRFASKVNSTRL 354
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 10/114 (8%)
Query: 178 RKLYNMVQDLRGNIRVYCRVRPSFR----AETK--NVIEFIGEDGSLVILDPLKARKEGR 231
R L+N +Q+LRGNIRVYCR+RP+ + ++T NV EF +D S V + +
Sbjct: 3 RTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEF--DDNSGVQSMEVTKIQNTA 60
Query: 232 KV--FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
+V F+F+ +F T DVFK+ L++S +DGYNVCIFAYGQTGSGKT TM+
Sbjct: 61 QVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 114
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/141 (55%), Positives = 102/141 (72%), Gaps = 4/141 (2%)
Query: 319 RAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLK 377
R+ +STA N SSRSHS+ IH+ G + +G+ L+LVDLAGSER++ S+V GDRL+
Sbjct: 202 RSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR 261
Query: 378 EAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEV 434
E Q INKSLSCLGDVI AL Q +S HIP+RNSKLT LLQ SL G +KTLMF ++SP
Sbjct: 262 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 321
Query: 435 DFFGETVSTLKFAQRVSTVEL 455
ET+++L+FA +V++ L
Sbjct: 322 SHINETLNSLRFASKVNSTRL 342
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 66/103 (64%), Gaps = 10/103 (9%)
Query: 189 GNIRVYCRVRPSFR----AETK--NVIEFIGEDGSLVILDPLKARKEGRKV--FQFNHVF 240
GNIRVYCR+RP+ + ++T NV EF +D S V + + +V F+F+ +F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEF--DDNSGVQSMEVTKIQNTAQVHEFKFDKIF 59
Query: 241 GPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
T DVFK+ L++S +DGYNVCIFAYGQTGSGKT TM+
Sbjct: 60 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 102
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 120/178 (67%), Gaps = 4/178 (2%)
Query: 283 IRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVH 342
IR + G + + T + ST+ V ++K R+ ++T N RSSRSHSV +H++
Sbjct: 170 IRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN 229
Query: 343 GKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS 401
G++ +G + L+LVDLAGSER++ S VTG+RL+E Q INKSLSCLGDVI AL ++
Sbjct: 230 GRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA 289
Query: 402 ---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELG 456
+IP+RNSKLT LLQ SL G +KTLMF ++ P+ + ET+++L+FA +V++ ++
Sbjct: 290 GKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 19/132 (14%)
Query: 187 LRGNIRVYCRVRPSFRAETKNVIEFIGED-------GSLVILDPLKARKEGRKV---FQF 236
LRGNIRVYCRVRP E +++ + E SL I R EGR + FQF
Sbjct: 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTI-----NRNEGRILSYNFQF 57
Query: 237 NHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPD 296
+ +F P+ T ++F++ + L++S +DGYNVCIFAYGQTGSGKT+TM+ + +G+ +P
Sbjct: 58 DMIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG---DGM-IPM 113
Query: 297 ATMHSVKSTADV 308
H K TA++
Sbjct: 114 TLSHIFKWTANL 125
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/215 (42%), Positives = 128/215 (59%), Gaps = 10/215 (4%)
Query: 289 ENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKD-TS 347
EN +P +T+ ++ +++ G R VS T +N SSRSH +L++ + D +
Sbjct: 176 ENVTTIPISTLEELR------MILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQT 229
Query: 348 GSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRN 407
S R L VDLAGSERV KS G++LKEAQ INKSLS LGDVI AL+ N HIPYRN
Sbjct: 230 QSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRN 289
Query: 408 SKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEV 467
KLT+L+ DSLGG AKTLMF +VSP ET ++L +A RV T+ + + S E+
Sbjct: 290 HKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI-VNDPSKHISSKEM 348
Query: 468 MQLKEQIESLKKALANKEAQKAIAVTERTPPRTRR 502
++LK+ + K+ K ++ + E RTR+
Sbjct: 349 VRLKKLVAYWKEQAGKKGEEEDLVDIE--EDRTRK 381
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 78/125 (62%), Gaps = 11/125 (8%)
Query: 178 RKLYNMVQDLRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKV 233
++ YN ++D++G IRVYCR+RP E+ K ++ + E + P K K RK
Sbjct: 2 KRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDE---FTVEHPWKDDK--RKQ 56
Query: 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLN 293
++ VF A+QDD+F+DT+ L++S +DGYNVCIFAYGQTGSGKT T I S GL
Sbjct: 57 HIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFT-IYGHESNPGLT 115
Query: 294 LPDAT 298
P AT
Sbjct: 116 -PRAT 119
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 4/141 (2%)
Query: 319 RAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLK 377
R+ +STA N SSRSHS+ IH+ G + +G+ L+LVDLAGSER++ S+V GDRL+
Sbjct: 259 RSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR 318
Query: 378 EAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEV 434
E Q INKSLS LGDVI AL Q +S HIP+RNSKLT LLQ SL G +KTLMF ++SP
Sbjct: 319 ETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 378
Query: 435 DFFGETVSTLKFAQRVSTVEL 455
ET+++L+FA +V++ L
Sbjct: 379 SHINETLNSLRFASKVNSTRL 399
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 73/114 (64%), Gaps = 10/114 (8%)
Query: 178 RKLYNMVQDLRGNIRVYCRVRPSFR----AETK--NVIEFIGEDGSLVILDPLKARKEGR 231
R L+N +Q+LRGNIRVY R+RP+ + ++T NV EF +D S V + +
Sbjct: 48 RTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEF--DDNSGVQSMEVTKIQNTA 105
Query: 232 KV--FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
+V F+F+ +F T DVFK+ L++S +DGYNV IFAYGQTGSGKT TM+
Sbjct: 106 QVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 4/141 (2%)
Query: 319 RAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLK 377
R+ +STA N SSRSHS+ IH+ G + +G+ L+LVDLAGS R++ S+V GDRL+
Sbjct: 203 RSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLR 262
Query: 378 EAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEV 434
E Q INKSLSCLGDVI AL Q +S HIP+RNSKLT LLQ SL G +KTLMF ++SP
Sbjct: 263 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 322
Query: 435 DFFGETVSTLKFAQRVSTVEL 455
ET+++L+FA +V++ L
Sbjct: 323 SHINETLNSLRFASKVNSTRL 343
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 10/105 (9%)
Query: 187 LRGNIRVYCRVRPSFR----AETK--NVIEFIGEDGSLVILDPLKARKEGRKV--FQFNH 238
+RGNIRVYCR+RP+ + ++T NV EF +D S V + + +V F+F+
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEF--DDNSGVQSMEVTKIQNTAQVHEFKFDK 58
Query: 239 VFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
+F T DVFK+ L++S +DGYNVCIFAYGQTGSGKT TM+
Sbjct: 59 IFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 4/141 (2%)
Query: 319 RAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLK 377
R+ +STA N SSRSHS+ IH+ G + +G+ L+LVDLAGSER++ S+V GDRL+
Sbjct: 203 RSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR 262
Query: 378 EAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEV 434
E Q I KSLSCLGDVI AL Q +S HIP+RNSKLT LLQ SL G +KTLMF ++SP
Sbjct: 263 ETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 322
Query: 435 DFFGETVSTLKFAQRVSTVEL 455
ET+++L+FA +V++ L
Sbjct: 323 SHINETLNSLRFASKVNSTRL 343
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 10/105 (9%)
Query: 187 LRGNIRVYCRVRPSFR----AETK--NVIEFIGEDGSLVILDPLKARKEGRKV--FQFNH 238
+RGNIRVYCR+RP+ + ++T NV EF +D S V + + +V F+F+
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEF--DDNSGVQSMEVTKIQNTAQVHEFKFDK 58
Query: 239 VFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
+F T DVFK+ L++S +DGYNVCIFAYGQTGSGKT TM+
Sbjct: 59 IFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 145 bits (367), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 4/141 (2%)
Query: 319 RAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLK 377
R+ +STA N SS SHS+ IH+ G + +G+ L+LVDLAGSER++ S+V GDRL+
Sbjct: 203 RSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLR 262
Query: 378 EAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEV 434
E Q INKSLSCLGDVI AL Q +S HIP+RNSKLT LLQ SL G +KTLMF ++SP
Sbjct: 263 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSS 322
Query: 435 DFFGETVSTLKFAQRVSTVEL 455
ET+++L+FA +V++ L
Sbjct: 323 SHINETLNSLRFASKVNSTRL 343
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 10/105 (9%)
Query: 187 LRGNIRVYCRVRPSFR----AETK--NVIEFIGEDGSLVILDPLKARKEGRKV--FQFNH 238
+RGNIRVYCR+RP+ + ++T NV EF +D S V + + +V F+F+
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEF--DDNSGVQSMEVTKIQNTAQVHEFKFDK 58
Query: 239 VFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
+F T DVFK+ L++S +DGYNVCIFAYGQTGSGKT TM+
Sbjct: 59 IFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 145 bits (365), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 126/198 (63%), Gaps = 2/198 (1%)
Query: 288 SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKD-T 346
S+ +++ + T+ S+ + ++ +++ G R + T +N +SSRSH ++++ + +
Sbjct: 161 SKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ 220
Query: 347 SGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYR 406
+ +I R L VDLAGSERV KS G++LKEAQ INKSLS LGDVI+AL+ N HIPYR
Sbjct: 221 TQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYR 280
Query: 407 NSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNE 466
N KLT+L+ DSLGG AKTLMF ++SP ET ++L +A RV ++ ++ N S E
Sbjct: 281 NHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK-NVSSKE 339
Query: 467 VMQLKEQIESLKKALANK 484
V +LK+ + K+ K
Sbjct: 340 VARLKKLVSYWKEQAGRK 357
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 9/102 (8%)
Query: 185 QDLRGNIRVYCRVRP----SFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVF 240
+D++G IRVYCR+RP A+ +N I + E + KA++ ++ VF
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQH-----MYDRVF 55
Query: 241 GPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
ATQDDVF+DT+ L++S +DGYNVCIFAYGQTGSGKT T+
Sbjct: 56 DGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 100/141 (70%), Gaps = 4/141 (2%)
Query: 319 RAVSSTAINNRSSRSHSVLTIHVHGK-DTSGSILRSCLHLVDLAGSERVDKSEVTGDRLK 377
R+ +STA N SSRSHS+ IH+ GK + +G + L+LVDLAGSER++ S V G+RL+
Sbjct: 227 RSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLR 286
Query: 378 EAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEV 434
E Q INKSLSCLGDVI AL + HIP+RNSKLT LLQ SL G +KTLMF ++SP
Sbjct: 287 ETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAA 346
Query: 435 DFFGETVSTLKFAQRVSTVEL 455
ET+++L+FA +V+ ++
Sbjct: 347 LHLNETINSLRFASKVNNTKM 367
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 82/142 (57%), Gaps = 22/142 (15%)
Query: 178 RKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFI---------GEDGSLVILDPLKARK 228
R L+N +Q+LRGNIRVYCR+RP E N IE I G+ G + R
Sbjct: 17 RALHNELQELRGNIRVYCRIRPPLPHEDDN-IEHIKVQPFDDDNGDQGMTI------NRG 69
Query: 229 EGRKV-FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA 287
+ + F+F+ +F T D++FK+ LI+S +DGYNVCIFAYGQTGSGKT+TM+
Sbjct: 70 NSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNP-- 127
Query: 288 SENGLNLPDATMHSVKSTADVL 309
G + AT++ + S D L
Sbjct: 128 ---GDGIVPATINHIFSWIDKL 146
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 142 bits (357), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 116/185 (62%), Gaps = 6/185 (3%)
Query: 289 ENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVH----GK 344
+ G+ + D + KS ++ +M +G NR+V +T +N SSRSH++ I + G
Sbjct: 184 DTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL 243
Query: 345 DTSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ-KNSHI 403
D I L+LVDLAGSER K+ G+RLKEA IN SLS LG+VI+AL K++HI
Sbjct: 244 DGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHI 303
Query: 404 PYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKE 463
PYR+SKLT LLQDSLGG AKT+M A+V P ET++TL++A R ++ RVN++
Sbjct: 304 PYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK-NKPRVNED 362
Query: 464 SNEVM 468
+ +
Sbjct: 363 PKDAL 367
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 8/117 (6%)
Query: 191 IRVYCRVRP----SFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQ 246
+RV R RP A V++ + G + + +P E K F F+ V+ A Q
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQ 82
Query: 247 DDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM--IRSCASENGLNLPDATMH 300
+++ +T +PL+ SV+ G+N IFAYGQTG+GKT+TM IR + G+ +P++ H
Sbjct: 83 FELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGV-IPNSFDH 138
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 107/163 (65%), Gaps = 7/163 (4%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDL 360
+KS + ++ R+ ++T N+ SSRSHS+ I + G ++ + L+L+DL
Sbjct: 558 IKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKESSYGTLNLIDL 617
Query: 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN-SHIPYRNSKLTLLLQDSLG 419
AGSER++ S GDRLKE Q INKSLSCLGDVI +L K+ SH+PYRNSKLT LL+ SLG
Sbjct: 618 AGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLG 677
Query: 420 GRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNK 462
G +KTLMF ++SP ET+++L+FA +V+ R+NK
Sbjct: 678 GNSKTLMFVNISPLTKDLNETINSLRFATKVNNT-----RINK 715
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 63/110 (57%), Gaps = 15/110 (13%)
Query: 187 LRGNIRVYCRVR-------PSFRAETKNVIEF-----IGEDG--SLVILDPLKARKEGRK 232
L+GNIRV+CR+R S + ++++I++ I ++ LVI + +
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
F F+ +F + D VF++ LI+ +DG NVC+FAYGQTGSGKT TM
Sbjct: 432 -FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM 480
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 90/207 (43%), Positives = 122/207 (58%), Gaps = 9/207 (4%)
Query: 253 TQPLIRSVMDGYNVCI---FAYG-QTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADV 308
T + S ++ YN + A G + G G + R+ L + +A V +V
Sbjct: 167 TYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEV 226
Query: 309 LQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS-GSILRSCLHLVDLAGSERVD 367
L+ L NRAV+ TA N RSSRSHSV + + G+ +S G + L LVDLAGSER+D
Sbjct: 227 DALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLD 286
Query: 368 KSEVTG----DRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAK 423
G +RL+E Q IN SLS LG VI AL+ K SH+PYRNSKLT LLQ+SLGG AK
Sbjct: 287 PGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAK 346
Query: 424 TLMFAHVSPEVDFFGETVSTLKFAQRV 450
LMF ++SP + E++++L+FA +V
Sbjct: 347 MLMFVNISPLEENVSESLNSLRFASKV 373
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 62/114 (54%), Gaps = 18/114 (15%)
Query: 187 LRGNIRVYCRVRPSFRAET---KNVIEFIGEDG---------SLVILDPLKARKEG---- 230
L+GNIRV+CRVRP E ++ F G SL D + G
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 231 --RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
R F F+ VF P + QD+VF++ L++S +DGY VCIFAYGQTGSGKT TM
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 108/164 (65%), Gaps = 3/164 (1%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDL 360
V S +V ++M+ G RAV++T +N SSRSHS+ I + K+ +GS L LVDL
Sbjct: 177 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDL 236
Query: 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ-KNSHIPYRNSKLTLLLQDSLG 419
AGSE+V K+ +G L+EA+ INKSLS LG VI AL K+SH+PYR+SKLT +LQ+SLG
Sbjct: 237 AGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLG 296
Query: 420 GRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKE 463
G ++T + + SP ET+STL+F R +++ A+VN E
Sbjct: 297 GNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIK-NKAKVNAE 339
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 190 NIRVYCRVRPSFRAETKN----VIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTAT 245
+I+V R RP R E ++ ++ F G D V KE + F F+ VF +
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV------DSKEAQGSFTFDRVFDMSCK 60
Query: 246 QDDVFK-DTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
Q D+F +P + +++GYN +FAYGQTG+GK++TM+
Sbjct: 61 QSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 77/160 (48%), Positives = 105/160 (65%), Gaps = 12/160 (7%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVH--GKDTS-------GSILR 352
V+ +VL L+++G R +T +N+ SSRSH+V T+ + G+ S G +L
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLV 242
Query: 353 SCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA---QKNSHIPYRNSK 409
S H VDLAGSERV K+ TG+RLKE+ IN SL LG+VI+AL ++ SHIPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSK 302
Query: 410 LTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQR 449
+T +L+DSLGG AKT+M A VSP F ET++TL +A R
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 191 IRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGR-KVFQFNHVFGPTATQDDV 249
+RV RVRP E + G L + L GR + F F+ V A Q+ V
Sbjct: 13 VRVALRVRPLLPKELLH-----GHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAV 67
Query: 250 FKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
++ QPL+ + +G+N +FAYGQTGSGKT+TM
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/162 (48%), Positives = 100/162 (61%), Gaps = 13/162 (8%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVL------TIHVHGKDTSGSILRSC 354
+V S D+ LM G +R V++T +N SSRSH+V T++ TSG +
Sbjct: 187 AVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGK- 245
Query: 355 LHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ------KNSHIPYRNS 408
L LVDLAGSER K+ GDRLKE INKSL+ LG VI+ALA KN +PYR+S
Sbjct: 246 LSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDS 305
Query: 409 KLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRV 450
LT LL+DSLGG +KT M A VSP D + ET+STL++A R
Sbjct: 306 VLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRA 347
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 23/121 (19%)
Query: 191 IRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPL-----KARKEGR-KVFQFNHVF 240
++V R+RP R ET K V++ D + VIL+P+ K G+ KVF ++H F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDV---DANKVILNPVNTNLSKGDARGQPKVFAYDHCF 59
Query: 241 GPT--------ATQDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENG 291
A QD VFK + ++++ DGYN CIFAYGQTGSGK++TM+ A + G
Sbjct: 60 WSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM-GTADQPG 118
Query: 292 L 292
L
Sbjct: 119 L 119
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 288 SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS 347
++N + + + T +V + LM ++NRA +STA N RSSRSH+V + + G+
Sbjct: 228 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 287
Query: 348 G-SILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYR 406
I ++LVDLAGSE S T R+ E + IN+SLS L +VI AL QK HIPYR
Sbjct: 288 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 343
Query: 407 NSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESN 465
NSKLT LL SLGG +KTLMF +VSP D F E+V +L+FA V++ ++ A+ N+ N
Sbjct: 344 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 402
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 176 ENRKLYNMVQDLRGNIRVYCRVRPSFRAE-TKNVIEFIGEDGSLVILDPLKAR---KEGR 231
E ++L+N V DLRGNIRV+CR+RP +E + + D S V L + A+ K G+
Sbjct: 54 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 113
Query: 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
++F F+ VF P ++Q D+F+ PLI+S +DGYN+CIFAYGQTGSGKT+TM
Sbjct: 114 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 164
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 288 SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS 347
++N + + + T +V + LM ++NRA +STA N RSSRSH+V + + G+
Sbjct: 214 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 273
Query: 348 G-SILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYR 406
I ++LVDLAGSE S T R+ E + IN+SLS L +VI AL QK HIPYR
Sbjct: 274 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 329
Query: 407 NSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESN 465
NSKLT LL SLGG +KTLMF +VSP D F E+V +L+FA V++ ++ A+ N+ N
Sbjct: 330 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 388
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 176 ENRKLYNMVQDLRGNIRVYCRVRPSFRAE-TKNVIEFIGEDGSLVILDPLKAR---KEGR 231
E ++L+N V DLRGNIRV+CR+RP +E + + D S V L + A+ K G+
Sbjct: 40 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 99
Query: 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
++F F+ VF P ++Q D+F+ PLI+S +DGYN+CIFAYGQTGSGKT+TM
Sbjct: 100 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 150
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/179 (44%), Positives = 111/179 (62%), Gaps = 5/179 (2%)
Query: 288 SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS 347
++N + + + T +V + LM ++NRA +STA N RSSRSH+V + + G+
Sbjct: 220 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 279
Query: 348 G-SILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYR 406
I ++LVDLAGSE S T R+ E + IN+SLS L +VI AL QK HIPYR
Sbjct: 280 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 335
Query: 407 NSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESN 465
NSKLT LL SLGG +KTLMF +VSP D F E+V +L+FA V++ ++ A+ N+ N
Sbjct: 336 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 394
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 176 ENRKLYNMVQDLRGNIRVYCRVRPSFRAE-TKNVIEFIGEDGSLVILDPLKAR---KEGR 231
E ++L+N V DLR NIRV+CR+RP +E + + D S V L + A+ K G+
Sbjct: 46 ERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 105
Query: 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
++F F+ VF P ++Q D+F+ PLI+S +DGYN+CIFAYGQTGSGKT+TM
Sbjct: 106 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 156
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 103/160 (64%), Gaps = 2/160 (1%)
Query: 297 ATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSG-SILRSCL 355
AT V S DV ++++ G+ NR ++ T +N SSRSHSV I+V ++ L L
Sbjct: 175 ATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKL 234
Query: 356 HLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN-SHIPYRNSKLTLLL 414
+LVDLAGSE+V K+ G L EA+ INKSLS LG+VI+ALA N +HIPYR+SKLT +L
Sbjct: 235 YLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRIL 294
Query: 415 QDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVE 454
Q+SLGG A+T + SP ET STL F +R TV+
Sbjct: 295 QESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 16/99 (16%)
Query: 191 IRVYCRVRP----SFRAETKNVIEFIG--EDGSLVILDPLKARKEGRKVFQFNHVFGPTA 244
I+V CR RP +A +K V++F E+ + I KV+ F+ VF P A
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---------AGKVYLFDKVFKPNA 63
Query: 245 TQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
+Q+ V+ + + ++ V+ GYN IFAYGQT SGKTHTM
Sbjct: 64 SQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 115/209 (55%), Gaps = 30/209 (14%)
Query: 289 ENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVH----GK 344
E G+ + D + K+ ++ +M LG RAV ST +N SSRSH++ I V G
Sbjct: 184 ETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGS 243
Query: 345 DTSGSILRSCLHLVDLAGSERVDKS------------------------EVTGDRLKEAQ 380
D I L+LVDLAGSER +K+ G+R KEA
Sbjct: 244 DGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEAS 303
Query: 381 YINKSLSCLGDVITALA-QKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGE 439
IN SLS LG+VI ALA +++HIPYR+SKLT LLQDSLGG AKT+M A + P + E
Sbjct: 304 KINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDE 363
Query: 440 TVSTLKFAQRVSTVELGAARVNKESNEVM 468
++STL+FA R ++ RVN++ + +
Sbjct: 364 SLSTLRFANRAKNIK-NKPRVNEDPKDTL 391
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 191 IRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQ 246
++V R RP R E + ++ + G + + +P A E K F F+ V+ ++ Q
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ 82
Query: 247 DDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
D++ +T +PLI SV+ G+N +FAYGQTG+GKT+TM
Sbjct: 83 ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTM 119
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/179 (44%), Positives = 110/179 (61%), Gaps = 5/179 (2%)
Query: 288 SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS 347
++N + + + T +V + LM ++NRA +STA N RSSRSH+V + + G+
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 348 G-SILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYR 406
I ++LVDLAGSE S T R+ E + I +SLS L +VI AL QK HIPYR
Sbjct: 277 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNIKRSLSELTNVILALLQKQDHIPYR 332
Query: 407 NSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESN 465
NSKLT LL SLGG +KTLMF +VSP D F E+V +L+FA V++ ++ A+ N+ N
Sbjct: 333 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLN 391
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 176 ENRKLYNMVQDLRGNIRVYCRVRPSFRAE-TKNVIEFIGEDGSLVILDPLKAR---KEGR 231
E ++L+N V DLRGNIRV+CR+RP +E + + D S V L + A+ K G+
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
++F F+ VF P ++Q D+F+ PLI+S +DGYN+CIFAYGQTGSGKT+TM
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM 153
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/169 (45%), Positives = 106/169 (62%), Gaps = 5/169 (2%)
Query: 288 SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS 347
++N + + + T +V + LM ++NRA +STA N RSSRSH+V + + G+
Sbjct: 217 NKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE 276
Query: 348 G-SILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYR 406
I ++LVDLAGSE S T R+ E + IN+SLS L +VI AL QK HIPYR
Sbjct: 277 KQEISVGSINLVDLAGSE----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYR 332
Query: 407 NSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVEL 455
NSKLT LL SLGG +KTLMF +VSP D F E+V +L+FA V++ ++
Sbjct: 333 NSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKM 381
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 176 ENRKLYNMVQDLRGNIRVYCRVRPSFRAE-TKNVIEFIGEDGSLVILDPLKAR---KEGR 231
E ++L+N V DLRGNIRV+CR+RP +E + + D S V L + A+ K G+
Sbjct: 43 ERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQ 102
Query: 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
++F F+ VF P ++Q D+F+ PLI+S +DGYN+CIFAYGQ+GSGKT+TM
Sbjct: 103 QIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTM 153
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 203 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 262
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 263 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 322
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 323 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V RVRP AE K S+V DP++ A K RK + F+ V
Sbjct: 18 NIQVVVRVRPFNLAERK------ASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 240 FGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 72 FGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTM 115
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 203 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 262
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 263 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 322
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 323 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 18 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 203 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 262
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 263 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 322
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 323 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 18 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 205 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 264
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 265 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 324
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 325 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 20 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 73
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 74 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 117
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 203 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 262
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 263 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 322
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 323 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 18 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 203 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 262
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 263 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 322
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 323 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 18 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 71
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 72 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 194 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 253
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 254 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 313
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 314 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 9 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 62
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 202 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 261
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 262 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 321
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 322 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 17 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 70
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 71 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 114
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 4/157 (2%)
Query: 301 SVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSC--LH 356
+V + +V Q+++ G R ++T +N SSRSHSV ++ +H K+T+ G L L+
Sbjct: 188 TVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLN 247
Query: 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
LVDLAGSE + +S R +EA IN+SL LG VITAL ++ H+PYR SKLT +LQD
Sbjct: 248 LVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQD 307
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
SLGGR +T + A +SP ET+STL++A R +
Sbjct: 308 SLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 17/104 (16%)
Query: 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLK----------ARKEGRKVFQFNHV 239
NI+V R RP AE K S+V DP++ A K RK + F+ V
Sbjct: 3 NIQVVVRCRPFNLAERK------ASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMV 56
Query: 240 FGPTATQDDVFKDTQ-PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
FG + Q DV++ P++ V+ GYN IFAYGQTG+GKT TM
Sbjct: 57 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 100
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDL 360
V S +V+ + G+ NR V+ T +N SSRSHS+ I+V ++T + L L+LVDL
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 232
Query: 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGG 420
AGSE+V K+ G L EA+ INKSLS LG+VI+ALA+ ++++PYR+SK+T +LQDSLGG
Sbjct: 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGG 292
Query: 421 RAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVE 454
+T + SP ET STL F QR T++
Sbjct: 293 NCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 190 NIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTAT 245
NI+V CR RP +E K V +F GED ++ P + F+ VF + +
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIASKP----------YAFDRVFQSSTS 57
Query: 246 QDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
Q+ V+ D + +++ V++GYN IFAYGQT SGK HTM
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTM 95
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDL 360
V S +V+ + G+ NR V+ T +N SSRSHS+ I+V ++T + L L+LVDL
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 232
Query: 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGG 420
AGSE+V K+ G L EA+ INKSLS LG+VI+ALA+ ++++PYR+SK+T +LQDSLGG
Sbjct: 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGG 292
Query: 421 RAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVE 454
+T + SP ET STL F QR T++
Sbjct: 293 NCRTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 15/98 (15%)
Query: 190 NIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTAT 245
NI+V CR RP +E K + +F GED ++ P + F+ VF + +
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP----------YAFDRVFQSSTS 57
Query: 246 QDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
Q+ V+ D + +++ V++GYN IFAYGQT SGKTHTM
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 120/222 (54%), Gaps = 30/222 (13%)
Query: 283 IRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV- 341
+R +E G + D T V+ ++++ M++G+ +R V+ST +N+ SSRSH+V TI +
Sbjct: 219 VRESPTE-GPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLK 277
Query: 342 ---HGKDTSGSILRSC-LHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA 397
H +T + RS + LVDLAGSER +E TG RL+E INKSL+ LG VI ALA
Sbjct: 278 QIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALA 337
Query: 398 Q----------------------KNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVD 435
NS +PYR+S LT LL+DSLGG +KT M A +SP
Sbjct: 338 DPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTD- 396
Query: 436 FFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESL 477
+ ET+STL++A + + A + + QI S+
Sbjct: 397 -YDETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDAQIPSI 437
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 8/60 (13%)
Query: 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSV--------MDGYNVCIFAYGQTGSGKTHTMI 283
K F F+ F T+D+ + + + S+ +GY+ CIFAYGQTGSGK++TM+
Sbjct: 96 KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDL 360
V S +V+ + G+ NR V+ T +N SSRSHS+ I+V ++T + L L+LVDL
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 232
Query: 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGG 420
AGSE+V K+ G L EA+ INKSLS LG+VI+ALA+ ++++PYR+SK+T +LQDSLGG
Sbjct: 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGG 292
Query: 421 RAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
+T + SP ET STL F QR T+
Sbjct: 293 NCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 15/98 (15%)
Query: 190 NIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTAT 245
NI+V CR RP +E K + +F GED ++ P + F+ VF + +
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKP----------YAFDRVFQSSTS 57
Query: 246 QDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
Q+ V+ D + +++ V++GYN IFAYGQT SGKTHTM
Sbjct: 58 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 103/160 (64%), Gaps = 12/160 (7%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV--HGKDTS-------GSILR 352
V+ +VL L+++G R +T +N+ SSRSH+V T+ + G+ S G +L
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLV 242
Query: 353 SCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA---QKNSHIPYRNSK 409
S H VDLAGSERV K+ TG+ KE+ IN SL LG+VI+AL ++ S+IPYR+SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSK 302
Query: 410 LTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQR 449
+T +L+DSLGG AKT+M A VSP F ET++TL +A R
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASR 342
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 191 IRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGR-KVFQFNHVFGPTATQDDV 249
+RV RVRP E + G L + L GR + F F+ V A Q+ V
Sbjct: 13 VRVALRVRPLLPKELLH-----GHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAV 67
Query: 250 FKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
++ QPL+ + +G+N +FAYGQTGSGKT+TM
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVH----GKDTSGSILRSCLHL 357
V S DV +L++ G+ R ++T +N +SSRSH+V +I VH G + + L+L
Sbjct: 205 VHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNL 264
Query: 358 VDLAGSERVDKS-EVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416
VDLAGSE V K+ G R++E IN+SL LG VITAL + H+PYR SKLT LLQ+
Sbjct: 265 VDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQE 324
Query: 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVE 454
SLGGR KT + A +SP ET+STL++A R ++
Sbjct: 325 SLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 61/107 (57%), Gaps = 12/107 (11%)
Query: 190 NIRVYCRVRPSFRAE----TKNVIEFIG--EDGSLVILDPLKARKEGRKVFQFNHVFGPT 243
NI+VY RVRP E + V++ +G E + LD +K F F+ FGP
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKK-----FTFDRSFGPE 78
Query: 244 ATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASE 289
+ Q DV+ PLI V++GYN +FAYGQTG+GKTHTM+ + +E
Sbjct: 79 SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAE 125
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 96/162 (59%), Gaps = 2/162 (1%)
Query: 294 LPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILR- 352
+P + + S AD + NR V +T +N RSSRSH+VL + V ++ +
Sbjct: 186 IPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQR 245
Query: 353 -SCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLT 411
L+L+DLAGSE ++ G RLKE+ IN SL LG V+ AL Q +PYR+SKLT
Sbjct: 246 EGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLT 305
Query: 412 LLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
LLQDSLGG A +++ A+++PE F+ +TVS L FA R V
Sbjct: 306 RLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEV 347
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 10/81 (12%)
Query: 234 FQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGL 292
+QF+ +G +TQ D++ + QP++R +++G N + AYG TG+GKTHTM+ S E
Sbjct: 67 YQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGS--PEQPG 124
Query: 293 NLPDATMHSVKSTADVLQLMK 313
+P A M D+LQL +
Sbjct: 125 VIPRALM-------DLLQLTR 138
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 17/180 (9%)
Query: 291 GLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV----HGKDT 346
G + D + +V S D+ LM G R V++T +N SSRSH+V I H +T
Sbjct: 191 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 250
Query: 347 SGSILR-SCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS---- 401
+ + + S + LVDLAGSER D + G RLKE INKSL+ LG VI+ALA+ +S
Sbjct: 251 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 310
Query: 402 --------HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
IPYR+S LT LL+++LGG ++T M A +SP + ET+STL++A R +
Sbjct: 311 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 189 GNIRVYCRVRP----SFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGP-- 242
+++V RVRP ++K +I+ G + I++P K KE K F F++ +
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSGS--TTTIVNP-KQPKETPKSFSFDYSYWSHT 76
Query: 243 ------TATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
A+Q V++D + +++ +GYNVCIFAYGQTG+GK++TM+
Sbjct: 77 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 124
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 96/167 (57%), Gaps = 4/167 (2%)
Query: 291 GLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGS- 349
G+ + ++H D L+ GE NR ++S +N SSRSH + TI++ + S
Sbjct: 193 GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSE 252
Query: 350 --ILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA-QKNSHIPYR 406
+ S ++LVDLAGSER+ KS G LKEA YINKSLS L I AL QK HIP+R
Sbjct: 253 EKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFR 312
Query: 407 NSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
KLT L+DSLGG ++ ++ E ET+S+L+FA R+ V
Sbjct: 313 QCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 244 ATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASEN 290
A+QD V++ + ++ +DGYN I YGQTG+GKT+TM+ A+EN
Sbjct: 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM--GATEN 128
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 17/180 (9%)
Query: 291 GLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV----HGKDT 346
G + D + +V S D+ LM G R V++T +N SSRSH+V I H +T
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 347 SGSILR-SCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS---- 401
+ + + S + LVDLAGSER D + G RLKE INKSL+ LG VI+ALA+ +S
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 402 --------HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
IPYR+S LT LL+++LGG ++T M A +SP + ET+STL++A R +
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 189 GNIRVYCRVRP----SFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGP-- 242
+++V RVRP ++K +I+ G + I++P K KE K F F++ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGS--TTTIVNP-KQPKETPKSFSFDYSYWSHT 60
Query: 243 ------TATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
A+Q V++D + +++ +GYNVCIFAYGQTG+GK++TM+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 17/180 (9%)
Query: 291 GLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV----HGKDT 346
G + D + +V S D+ LM G R V++T +N SSRSH+V I H +T
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 347 SGSILR-SCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS---- 401
+ + + S + LVDLAGSER D + G RLKE INKSL+ LG VI+ALA+ +S
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 402 --------HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
IPYR+S LT LL+++LGG ++T M A +SP + ET+STL++A R +
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 189 GNIRVYCRVRP----SFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGP-- 242
+++V RVRP ++K +I+ G + I++P K KE K F F++ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGS--TTTIVNP-KQPKETPKSFSFDYSYWSHT 60
Query: 243 ------TATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
A+Q V++D + +++ +GYNVCIFAYGQTG+GK++TM+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 104/180 (57%), Gaps = 17/180 (9%)
Query: 291 GLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHV----HGKDT 346
G + D + +V S D+ LM G R V++T +N SSRSH+V I H +T
Sbjct: 175 GPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234
Query: 347 SGSILR-SCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS---- 401
+ + + S + LVDLAGSER D + G RLKE INKSL+ LG VI+ALA+ +S
Sbjct: 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNK 294
Query: 402 --------HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453
IPYR+S LT LL+++LGG ++T M A +SP + ET+STL++A R +
Sbjct: 295 NKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 16/108 (14%)
Query: 189 GNIRVYCRVRP----SFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGP-- 242
+++V RVRP ++K +I+ G + I++P K KE K F F++ +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSGS--TTTIVNP-KQPKETPKSFSFDYSYWSHT 60
Query: 243 ------TATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283
A+Q V++D + +++ +GYNVCIFAYGQTG+GK++TM+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 112/207 (54%), Gaps = 12/207 (5%)
Query: 250 FKDTQPLIR-SVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADV 308
F D + L+R S M+ YN I G+ K +I + + D T V ++
Sbjct: 119 FPDREFLLRVSYMEIYNETITDL-LCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMA 177
Query: 309 LQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS------GSILRSCLHLVDLAG 362
L+ + GE +R T +N RSSRSH++ + + ++ GS+ S L+LVDLAG
Sbjct: 178 LKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAG 237
Query: 363 SERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA--QKNSHIPYRNSKLTLLLQDSLGG 420
SER ++ G RLKE IN+SL LG VI L+ Q I YR+SKLT +LQ+SLGG
Sbjct: 238 SERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGG 297
Query: 421 RAKTLMFAHVSPEVDFFGETVSTLKFA 447
AKT + ++P F ET++ L+FA
Sbjct: 298 NAKTRIICTITPVS--FDETLTALQFA 322
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 189 GNIRVYCRVRPSFRAETKNVIEFIGEDGSLVIL--DPLKARKEGRKVFQFNHVFGPTATQ 246
G + V RVRP E E +GE + + + + +G K F F+ VF T
Sbjct: 4 GAVAVCVRVRPLNSRE-----ESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETT 58
Query: 247 DDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSV 302
+V+++ P+I S + GYN IFAYGQT SGKT+TM+ SE+ L + +H +
Sbjct: 59 KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM---GSEDHLGVIPRAIHDI 112
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 300 HSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVD 359
H V S DV++++ +G R T N+ SSRSH+ I + K + LVD
Sbjct: 231 HLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR----MHGKFSLVD 286
Query: 360 LAGSER-VDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDS- 417
LAG+ER D S E INKSL L + I AL Q +H P+R SKLT +L+DS
Sbjct: 287 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSF 346
Query: 418 LGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRV 450
+G ++T M A +SP + T++TL++A RV
Sbjct: 347 IGENSRTCMIATISPGISSCEYTLNTLRYADRV 379
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 232 KVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
+ F F+ F TA+ + V++ T +PL++++ +G FAYGQTGSGKTHTM
Sbjct: 101 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 87/154 (56%), Gaps = 5/154 (3%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLA 361
+ S AD+ +++LG NR V T +N+ SSRSH+++TIHV K S +++VDLA
Sbjct: 189 LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTH-----HSRMNIVDLA 243
Query: 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGR 421
GSE V ++ G +E IN L + V+ ++A ++ IPYR+S LT +LQ SL +
Sbjct: 244 GSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQ 303
Query: 422 AKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVEL 455
+ A +SP ET+STL+F + L
Sbjct: 304 SYLTFLACISPHQCDLSETLSTLRFGTSAKKLRL 337
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 207 NVIEFI-GEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDGY 264
+V++F DG +I+D + F F+H F T +QD++++ PL+ +++G+
Sbjct: 43 SVVQFPPWSDGKSLIVD--------QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94
Query: 265 NVCIFAYGQTGSGKTHTM 282
AYGQTG+GK+++M
Sbjct: 95 QCTALAYGQTGTGKSYSM 112
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 86/154 (55%), Gaps = 5/154 (3%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLA 361
+ S AD+ +++LG NR V T +N+ SSRSH+++TIHV K S +++VDLA
Sbjct: 189 LHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTH-----HSRMNIVDLA 243
Query: 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGR 421
GSE V ++ G +E IN L + V+ ++A ++ IPYR+S LT +LQ SL +
Sbjct: 244 GSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQ 303
Query: 422 AKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVEL 455
+ A +SP ET+STL+F L
Sbjct: 304 SYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 207 NVIEFI-GEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDGY 264
+V++F DG +I+D + F F+H F T +QD++++ PL+ +++G+
Sbjct: 43 SVVQFPPWSDGKSLIVD--------QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGF 94
Query: 265 NVCIFAYGQTGSGKTHTM 282
AYGQTG+GK+++M
Sbjct: 95 QCTALAYGQTGTGKSYSM 112
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 18/159 (11%)
Query: 300 HSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTI------HVHGKDTSGSILRS 353
+ V DV++++ +G R T N+ SSRSH+ I +HGK
Sbjct: 251 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK--------- 301
Query: 354 CLHLVDLAGSER-VDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTL 412
LVDLAG+ER D S E INKSL L + I AL Q +H P+R SKLT
Sbjct: 302 -FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 360
Query: 413 LLQDS-LGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRV 450
+L+DS +G ++T M A +SP + T++TL++A RV
Sbjct: 361 VLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 399
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 232 KVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
+ F F+ F TA+ + V++ T +PL++++ +G FAYGQTGSGKTHTM
Sbjct: 121 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLA 361
VK DVL+L+ +G R T+ N SSRSH+V I + K L L+DLA
Sbjct: 271 VKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK----LHGKFSLIDLA 326
Query: 362 GSER-VDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDS-LG 419
G+ER D S E INKSL L + I AL + H P+R SKLT +L+DS +G
Sbjct: 327 GNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIG 386
Query: 420 GRAKTLMFAHVSPEVDFFGETVSTLKFAQRV 450
++T M A +SP + T++TL++A RV
Sbjct: 387 ENSRTCMIATISPGMASCENTLNTLRYANRV 417
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 26/135 (19%)
Query: 173 VVNENRKLYNMVQDLRGN----------------IRVYCRVRPSFRAETK----NVIEFI 212
N N ++ M++D RG+ I V R RP + ET+ +VI
Sbjct: 57 ATNPNYEIMCMIRDFRGSLDYRPLTTADPIDEHRICVCVRKRPLNKKETQMKDLDVITIP 116
Query: 213 GEDGSLVILDPLK----ARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNVC 267
+D +++ +P + R + F+F++ F +A + V++ T +PL+ ++ +
Sbjct: 117 SKD-VVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMAT 175
Query: 268 IFAYGQTGSGKTHTM 282
FAYGQTGSGKTHTM
Sbjct: 176 CFAYGQTGSGKTHTM 190
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 83/159 (52%), Gaps = 18/159 (11%)
Query: 300 HSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTI------HVHGKDTSGSILRS 353
+ V DV++++ +G R T N+ SSRSH+ I +HGK
Sbjct: 179 YLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGK--------- 229
Query: 354 CLHLVDLAGSER-VDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTL 412
LVDLAG+ER D S E INKSL L + I AL Q +H P+R SKLT
Sbjct: 230 -FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQ 288
Query: 413 LLQDS-LGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRV 450
+L+DS +G ++T M A +SP + T++TL++A RV
Sbjct: 289 VLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRV 327
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 232 KVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
+ F F+ F TA+ + V++ T +PL++++ +G FAYGQTGSGKTHTM
Sbjct: 49 QAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 100
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 128/282 (45%), Gaps = 64/282 (22%)
Query: 231 RKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNVC-IFAYGQTGS------------ 276
R F + VF T V+++T +PLI + + VC FAYGQTGS
Sbjct: 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY 108
Query: 277 ----------------------------------------GKTHTMIRS----CASENG- 291
GK + +++ A ENG
Sbjct: 109 GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGK 168
Query: 292 --LNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGS 349
+ + D + V + +++ M G L R + + N+ SSRSH++L I + KD + +
Sbjct: 169 KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL--KDINKN 226
Query: 350 ILRSCLHLVDLAGSER-VDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNS 408
+ +DLAGSER D + IN+SL L + I A+ +HIP+R+S
Sbjct: 227 TSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDS 286
Query: 409 KLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRV 450
+LT +L+D G++K++M A++SP + +T++TL+++ RV
Sbjct: 287 ELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRV 328
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 383 NKSLSCLGDVITALAQKN-SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETV 441
NKSLS LG+VI+ALA+ +H+PYR+SK+T +LQDSLGG +T + SP V ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 442 STLKFAQRVSTVE 454
STL F QR T++
Sbjct: 61 STLMFGQRAKTIK 73
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/77 (51%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 379 AQYINKSLSCLGDVITALAQKN-SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFF 437
A+ INKSLS LG+VI+ALA+ +H+PYR+SK+T +LQDSL G +T + SP V
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 438 GETVSTLKFAQRVSTVE 454
ET STL F QR T++
Sbjct: 61 AETKSTLMFGQRAKTIK 77
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 190 NIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTAT 245
+I+V CR RP AE K + +F GE+ ++ +G K + F+ V P T
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKFKGEETVVI--------GQG-KPYVFDRVLPPNTT 57
Query: 246 QDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282
Q+ V+ + +++ V++GYN IFAYGQT SGKTHTM
Sbjct: 58 QEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTM 95
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 302 VKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDL 360
V S +V+ ++ G+ NR V+ T +N SSRSHS+ I++ ++ + L L+LVDL
Sbjct: 173 VSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDL 232
Query: 361 AGSERV 366
AGSE+V
Sbjct: 233 AGSEKV 238
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
With The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 303 KSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAG 362
K+ A ++ + + L + ++ + ++ R + L IH H DTSG + L V+ AG
Sbjct: 720 KAGAHIIAVXDMAGLLKPAAAKVLF-KALREATGLPIHFHTHDTSGIAAATVLAAVE-AG 777
Query: 363 SERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA 397
+ VD + +A N S CLG ++ AL+
Sbjct: 778 VDAVDAA-------MDALSGNTSQPCLGSIVEALS 805
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 303 KSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAG 362
K+ A ++ + + L + ++ + ++ R + L IH H DTSG + L V+ AG
Sbjct: 720 KAGAHIIAVXDMAGLLKPAAAKVLF-KALREATGLPIHFHTHDTSGIAAATVLAAVE-AG 777
Query: 363 SERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA 397
+ VD + +A N S CLG ++ AL+
Sbjct: 778 VDAVDAA-------MDALSGNTSQPCLGSIVEALS 805
>pdb|1X0U|A Chain A, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|B Chain B, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|C Chain C, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|D Chain D, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|E Chain E, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
pdb|1X0U|F Chain F, Crystal Structure Of The Carboxyl Transferase Subunit Of
Putative Pcc Of Sulfolobus Tokodaii
Length = 522
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 409 KLTLLLQDSLGGRAKTLMFAHVSPEVDFFG-ETVSTLKFAQRVSTVELGAARV------N 461
K+T++++ S GG AH++ + G + V A+ T GA R+
Sbjct: 401 KITVIVRKSYGG-------AHIAMSIKSLGADLVYAWPTAEIAVTGPEGAVRILYRKEIQ 453
Query: 462 KESNEVMQLKEQIESLKKALANK--EAQKAIAVTERTPPRTRRLSIESLSAVKTEKVINS 519
+ SN LK++I +K AN A+K + P TRR+ + L +KT++
Sbjct: 454 QASNPDDVLKQRIAEYRKLFANPYWAAEKGLVDDVIEPKDTRRVIVAGLEMLKTKREYRY 513
Query: 520 QEKKG 524
+K G
Sbjct: 514 PKKHG 518
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 169 GYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARK 228
G + +++ENR +QDL +++ RVR + + IE+I GS ++++P K +
Sbjct: 273 GLNNLLDENR-----IQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKT 327
Query: 229 EGRKVFQF 236
+++ F
Sbjct: 328 MVQELLDF 335
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 32.3 bits (72), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 169 GYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARK 228
G + +++ENR +QDL +++ RVR + + IE+I GS ++++P K +
Sbjct: 288 GLNNLLDENR-----IQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKT 342
Query: 229 EGRKVFQF 236
+++ F
Sbjct: 343 MVQELLDF 350
>pdb|3R6H|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase (Echa3) From
Mycobacterium Marinum
Length = 233
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 436 FFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEAQKAI 490
FFGET F +S E+ +R + + E L +Q + K A EA KAI
Sbjct: 166 FFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHNATKLRARAEALKAI 220
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 169 GYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKAR 227
G + +++ENR +QDL +++ RVR + + IE+I GS ++++P K +
Sbjct: 257 GLNNLLDENR-----IQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDK 310
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 264 YNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTA---DVLQLMKLGELN 318
YN +F YG G GKTH +++S + N PD + + S D++ MK G+LN
Sbjct: 130 YN-PLFIYGGVGLGKTH-LLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLN 185
>pdb|3BQJ|A Chain A, Va387 Polypeptide
Length = 304
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 265 NVCIFAYGQTGSGKTHTMIRSCASENGLNL-PDATMHSVKSTADVLQLMKLGELNRAVSS 323
N+C F TG +H I + AS+N N P + + T D +G++ ++
Sbjct: 58 NICTFRGDVTGVAGSHDYIMNLASQNWNNYDPTEEIPAPLGTPDF-----VGKIQGMLTQ 112
Query: 324 TAINNRSSRSH--SVLTIHVHGKDTSGSI 350
T + S+R+H +V T VH GS+
Sbjct: 113 TTREDGSTRAHKATVSTGSVHFTPKLGSV 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,396,462
Number of Sequences: 62578
Number of extensions: 682294
Number of successful extensions: 2230
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1968
Number of HSP's gapped (non-prelim): 148
length of query: 648
length of database: 14,973,337
effective HSP length: 105
effective length of query: 543
effective length of database: 8,402,647
effective search space: 4562637321
effective search space used: 4562637321
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)