Query 047843
Match_columns 648
No_of_seqs 444 out of 2084
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 03:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 2.7E-79 5.8E-84 693.2 32.1 363 119-481 241-668 (670)
2 KOG4280 Kinesin-like protein [ 100.0 2.4E-74 5.2E-79 637.0 23.7 299 188-486 4-370 (574)
3 KOG0243 Kinesin-like protein [ 100.0 5.1E-73 1.1E-77 649.9 24.2 299 188-487 48-426 (1041)
4 KOG0245 Kinesin-like protein [ 100.0 3.7E-71 8E-76 625.6 19.0 295 189-487 4-383 (1221)
5 PLN03188 kinesin-12 family pro 100.0 7.6E-69 1.7E-73 620.8 30.4 291 188-487 97-468 (1320)
6 cd01370 KISc_KIP3_like Kinesin 100.0 2.7E-67 5.9E-72 556.1 26.9 262 190-453 1-338 (338)
7 cd01373 KISc_KLP2_like Kinesin 100.0 4.3E-67 9.2E-72 554.4 27.2 258 189-453 1-337 (337)
8 KOG0240 Kinesin (SMY1 subfamil 100.0 1.1E-66 2.4E-71 565.7 23.7 268 188-460 6-338 (607)
9 KOG0242 Kinesin-like protein [ 100.0 5E-67 1.1E-71 594.6 21.8 295 189-483 6-363 (675)
10 cd01368 KISc_KIF23_like Kinesi 100.0 3.7E-65 8.1E-70 541.4 28.4 262 189-451 1-345 (345)
11 cd01367 KISc_KIF2_like Kinesin 100.0 1.9E-64 4.2E-69 531.0 27.8 260 189-451 1-322 (322)
12 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.4E-64 9.5E-69 533.2 28.6 271 189-460 2-350 (352)
13 cd01376 KISc_KID_like Kinesin 100.0 8E-64 1.7E-68 525.4 27.7 259 190-451 1-319 (319)
14 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.3E-63 2.8E-68 530.9 29.1 268 189-458 1-354 (356)
15 cd01371 KISc_KIF3 Kinesin moto 100.0 1.1E-63 2.4E-68 527.1 28.1 265 189-453 1-333 (333)
16 cd01366 KISc_C_terminal Kinesi 100.0 9.4E-63 2E-67 517.9 29.0 265 188-456 1-329 (329)
17 cd01369 KISc_KHC_KIF5 Kinesin 100.0 8.7E-63 1.9E-67 517.8 28.2 259 189-453 2-325 (325)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 1.5E-62 3.2E-67 515.6 26.9 258 190-453 1-321 (321)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2.8E-62 6E-67 516.7 27.3 257 190-454 2-341 (341)
20 KOG0241 Kinesin-like protein [ 100.0 7.5E-63 1.6E-67 549.7 22.0 298 189-487 4-386 (1714)
21 cd01375 KISc_KIF9_like Kinesin 100.0 8.5E-62 1.8E-66 513.2 27.0 260 190-451 1-334 (334)
22 smart00129 KISc Kinesin motor, 100.0 1.4E-58 3E-63 486.7 29.0 268 190-459 1-334 (335)
23 cd00106 KISc Kinesin motor dom 100.0 2.2E-58 4.8E-63 483.0 29.1 261 190-451 1-328 (328)
24 KOG0246 Kinesin-like protein [ 100.0 1.4E-58 3E-63 501.5 21.7 265 190-457 209-545 (676)
25 PF00225 Kinesin: Kinesin moto 100.0 1.9E-57 4.1E-62 477.2 20.7 258 196-453 1-335 (335)
26 KOG0244 Kinesin-like protein [ 100.0 3.9E-56 8.4E-61 504.6 4.7 281 197-485 1-350 (913)
27 KOG0247 Kinesin-like protein [ 100.0 1.6E-52 3.4E-57 464.6 22.7 270 186-456 28-439 (809)
28 COG5059 KIP1 Kinesin-like prot 100.0 4E-51 8.7E-56 458.9 25.7 283 188-479 21-364 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.4E-49 3.1E-54 387.7 15.5 175 249-432 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.9 8.1E-11 1.8E-15 133.8 -5.3 236 151-397 265-566 (568)
31 PF00308 Bac_DnaA: Bacterial d 94.7 0.017 3.7E-07 58.6 2.0 49 233-283 4-52 (219)
32 PTZ00454 26S protease regulato 93.0 0.14 3.1E-06 56.8 5.5 50 233-282 141-196 (398)
33 PRK06620 hypothetical protein; 92.7 0.044 9.4E-07 55.5 0.9 51 231-284 10-63 (214)
34 PRK14086 dnaA chromosomal repl 92.0 0.077 1.7E-06 61.8 1.9 51 231-283 282-332 (617)
35 PRK06893 DNA replication initi 91.9 0.098 2.1E-06 53.2 2.4 48 231-283 10-57 (229)
36 PRK00149 dnaA chromosomal repl 91.6 0.082 1.8E-06 59.0 1.6 50 231-282 116-165 (450)
37 TIGR00362 DnaA chromosomal rep 91.6 0.088 1.9E-06 57.8 1.7 50 231-282 104-153 (405)
38 PRK12377 putative replication 91.4 0.13 2.8E-06 53.6 2.5 75 235-316 72-148 (248)
39 PRK14088 dnaA chromosomal repl 91.2 0.097 2.1E-06 58.6 1.6 50 231-283 99-148 (440)
40 PRK08084 DNA replication initi 91.0 0.13 2.8E-06 52.6 2.1 48 231-283 16-63 (235)
41 COG2804 PulE Type II secretory 90.9 0.19 4.1E-06 57.2 3.5 30 253-282 246-275 (500)
42 PF13479 AAA_24: AAA domain 90.7 0.25 5.3E-06 49.8 3.8 50 265-314 3-61 (213)
43 PRK08116 hypothetical protein; 90.5 0.16 3.5E-06 53.2 2.3 75 233-314 81-159 (268)
44 TIGR01242 26Sp45 26S proteasom 90.3 0.71 1.5E-05 50.1 7.2 18 265-282 156-173 (364)
45 PRK05642 DNA replication initi 90.3 0.17 3.7E-06 51.7 2.3 49 232-283 14-63 (234)
46 PRK07952 DNA replication prote 90.3 0.16 3.6E-06 52.7 2.2 75 234-315 69-145 (244)
47 COG2805 PilT Tfp pilus assembl 89.9 0.19 4.1E-06 54.2 2.3 29 254-282 114-142 (353)
48 COG0593 DnaA ATPase involved i 88.9 0.18 3.9E-06 56.3 1.3 79 231-314 81-161 (408)
49 TIGR03420 DnaA_homol_Hda DnaA 88.9 0.29 6.2E-06 48.5 2.6 46 232-282 10-55 (226)
50 PRK08903 DnaA regulatory inact 88.9 0.28 6.1E-06 49.1 2.6 48 231-282 12-59 (227)
51 PRK06835 DNA replication prote 88.9 0.17 3.7E-06 54.8 1.1 63 247-314 166-228 (329)
52 PRK14087 dnaA chromosomal repl 88.8 0.2 4.4E-06 56.3 1.6 79 233-315 111-189 (450)
53 PRK03992 proteasome-activating 88.1 1.3 2.8E-05 48.9 7.3 18 265-282 165-182 (389)
54 PRK09087 hypothetical protein; 87.6 0.33 7.1E-06 49.7 2.1 51 231-286 15-65 (226)
55 COG1419 FlhF Flagellar GTP-bin 87.4 1.1 2.3E-05 50.1 6.1 49 265-313 203-277 (407)
56 PF04851 ResIII: Type III rest 87.1 0.3 6.5E-06 45.8 1.4 28 257-284 16-44 (184)
57 TIGR02928 orc1/cdc6 family rep 87.1 0.4 8.6E-06 51.2 2.5 49 234-282 8-57 (365)
58 smart00053 DYNc Dynamin, GTPas 87.0 1.1 2.4E-05 46.6 5.6 88 267-366 28-138 (240)
59 COG0556 UvrB Helicase subunit 86.9 0.55 1.2E-05 53.9 3.5 47 232-282 3-49 (663)
60 PRK08939 primosomal protein Dn 85.3 0.46 1E-05 50.9 1.8 50 234-283 124-174 (306)
61 PRK08727 hypothetical protein; 85.2 0.53 1.1E-05 48.1 2.1 45 232-283 14-59 (233)
62 cd01850 CDC_Septin CDC/Septin. 85.1 11 0.00023 39.8 11.9 22 262-283 1-22 (276)
63 cd00046 DEXDc DEAD-like helica 84.9 0.32 7E-06 42.4 0.4 16 268-283 3-18 (144)
64 PRK12422 chromosomal replicati 84.7 0.53 1.2E-05 53.0 2.1 50 231-282 105-158 (445)
65 PRK06526 transposase; Provisio 84.7 0.42 9.1E-06 49.9 1.2 64 240-314 77-143 (254)
66 COG1484 DnaC DNA replication p 84.6 0.62 1.3E-05 48.6 2.4 109 234-369 76-184 (254)
67 cd01378 MYSc_type_I Myosin mot 84.5 3.2 7E-05 49.3 8.5 82 248-342 68-160 (674)
68 PRK00411 cdc6 cell division co 84.4 0.72 1.6E-05 49.9 2.9 38 245-282 34-72 (394)
69 smart00242 MYSc Myosin. Large 84.4 3.1 6.8E-05 49.4 8.3 83 247-342 73-166 (677)
70 cd00009 AAA The AAA+ (ATPases 83.2 0.73 1.6E-05 40.6 2.0 25 258-282 12-36 (151)
71 COG1474 CDC6 Cdc6-related prot 83.1 0.76 1.7E-05 50.6 2.4 32 251-282 27-59 (366)
72 PRK10436 hypothetical protein; 82.9 1.1 2.4E-05 50.8 3.7 27 256-282 209-235 (462)
73 PRK08181 transposase; Validate 82.8 0.7 1.5E-05 48.8 1.9 46 262-315 105-152 (269)
74 cd01382 MYSc_type_VI Myosin mo 82.6 5.2 0.00011 47.9 9.2 82 248-342 73-162 (717)
75 cd01384 MYSc_type_XI Myosin mo 82.4 4.5 9.7E-05 48.1 8.5 86 248-342 70-163 (674)
76 cd00124 MYSc Myosin motor doma 81.8 4.9 0.00011 47.8 8.5 84 247-342 67-158 (679)
77 PF00063 Myosin_head: Myosin h 81.6 2.9 6.3E-05 49.4 6.6 88 247-342 66-161 (689)
78 TIGR02538 type_IV_pilB type IV 81.4 0.7 1.5E-05 53.5 1.4 28 255-282 306-333 (564)
79 cd01377 MYSc_type_II Myosin mo 81.3 4.4 9.5E-05 48.3 7.9 89 247-342 72-172 (693)
80 PRK06921 hypothetical protein; 81.0 1.1 2.3E-05 47.2 2.5 36 248-283 97-135 (266)
81 PF00270 DEAD: DEAD/DEAH box h 81.0 0.84 1.8E-05 42.6 1.6 26 256-283 7-32 (169)
82 PF01935 DUF87: Domain of unkn 81.0 0.54 1.2E-05 47.1 0.3 15 268-282 26-40 (229)
83 TIGR02533 type_II_gspE general 80.6 0.85 1.8E-05 52.0 1.7 28 255-282 232-259 (486)
84 PF13401 AAA_22: AAA domain; P 80.3 0.52 1.1E-05 42.4 -0.1 18 265-282 4-21 (131)
85 smart00382 AAA ATPases associa 80.2 0.62 1.3E-05 40.4 0.4 18 266-283 3-20 (148)
86 PF12846 AAA_10: AAA-like doma 80.1 0.6 1.3E-05 47.4 0.3 18 265-282 1-18 (304)
87 PRK12402 replication factor C 79.6 0.89 1.9E-05 47.8 1.4 41 235-282 13-53 (337)
88 cd01383 MYSc_type_VIII Myosin 79.5 7 0.00015 46.6 8.8 81 247-342 73-162 (677)
89 PF05673 DUF815: Protein of un 79.2 0.46 1E-05 49.8 -0.9 46 233-282 23-69 (249)
90 TIGR01420 pilT_fam pilus retra 79.1 0.98 2.1E-05 48.9 1.5 27 256-282 113-139 (343)
91 PRK14723 flhF flagellar biosyn 79.0 3.4 7.3E-05 49.8 6.0 18 266-283 186-203 (767)
92 cd01131 PilT Pilus retraction 78.8 0.73 1.6E-05 45.9 0.4 18 265-282 1-18 (198)
93 cd01380 MYSc_type_V Myosin mot 78.7 4.5 9.7E-05 48.2 6.9 88 248-342 68-163 (691)
94 PLN03137 ATP-dependent DNA hel 78.6 19 0.00042 45.4 12.3 26 254-281 466-491 (1195)
95 cd01381 MYSc_type_VII Myosin m 78.4 7.3 0.00016 46.4 8.5 82 247-342 67-157 (671)
96 cd01385 MYSc_type_IX Myosin mo 78.3 8 0.00017 46.2 8.8 83 247-342 75-168 (692)
97 PF00437 T2SE: Type II/IV secr 78.0 1 2.2E-05 46.5 1.1 28 254-282 117-144 (270)
98 cd01387 MYSc_type_XV Myosin mo 77.8 8.5 0.00019 45.8 8.8 84 247-341 68-158 (677)
99 PTZ00112 origin recognition co 77.3 1.5 3.3E-05 53.5 2.5 37 246-282 760-798 (1164)
100 TIGR02525 plasmid_TraJ plasmid 77.0 1.3 2.8E-05 49.0 1.7 26 256-282 141-166 (372)
101 PF13245 AAA_19: Part of AAA d 76.6 1.2 2.6E-05 38.2 1.1 26 257-283 3-28 (76)
102 cd01379 MYSc_type_III Myosin m 76.2 9.9 0.00021 45.2 8.7 84 247-342 67-158 (653)
103 cd01129 PulE-GspE PulE/GspE Th 76.1 1.4 3.1E-05 46.1 1.7 28 255-282 70-97 (264)
104 TIGR02524 dot_icm_DotB Dot/Icm 76.0 1.4 3E-05 48.4 1.6 19 264-282 133-151 (358)
105 TIGR03015 pepcterm_ATPase puta 75.1 2 4.4E-05 43.7 2.4 23 261-283 39-61 (269)
106 PF13191 AAA_16: AAA ATPase do 74.9 0.84 1.8E-05 43.2 -0.4 32 251-282 10-41 (185)
107 PRK13894 conjugal transfer ATP 74.7 1.7 3.6E-05 47.1 1.8 28 254-282 138-165 (319)
108 PF13604 AAA_30: AAA domain; P 74.3 1.6 3.6E-05 43.4 1.5 28 255-282 8-35 (196)
109 PTZ00361 26 proteosome regulat 74.1 6.1 0.00013 44.7 6.1 16 267-282 219-234 (438)
110 PRK10884 SH3 domain-containing 73.9 15 0.00033 37.6 8.3 74 117-190 91-168 (206)
111 PF01637 Arch_ATPase: Archaeal 73.8 1.3 2.8E-05 43.1 0.6 29 254-282 9-37 (234)
112 PF00735 Septin: Septin; Inte 73.6 2 4.4E-05 45.5 2.1 21 262-282 1-21 (281)
113 PF01695 IstB_IS21: IstB-like 72.9 2 4.4E-05 42.3 1.7 44 266-315 48-93 (178)
114 COG5008 PilU Tfp pilus assembl 72.7 2.3 5E-05 45.6 2.2 29 254-282 116-144 (375)
115 TIGR02782 TrbB_P P-type conjug 72.0 2.1 4.5E-05 45.8 1.7 28 254-282 122-149 (299)
116 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.6 38 0.00082 32.0 9.9 59 126-187 73-131 (132)
117 PF00448 SRP54: SRP54-type pro 71.5 1.4 3E-05 44.3 0.2 16 267-282 3-18 (196)
118 PF13207 AAA_17: AAA domain; P 71.4 1.5 3.3E-05 39.0 0.5 16 267-282 1-16 (121)
119 PRK13900 type IV secretion sys 70.7 2.3 5.1E-05 46.2 1.8 29 253-282 149-177 (332)
120 cd01386 MYSc_type_XVIII Myosin 70.5 5.6 0.00012 48.0 5.0 82 248-342 68-159 (767)
121 TIGR00635 ruvB Holliday juncti 70.0 2.6 5.6E-05 44.1 1.9 39 244-282 7-47 (305)
122 smart00487 DEXDc DEAD-like hel 69.6 2.8 6E-05 38.9 1.8 27 256-283 16-42 (201)
123 PRK12723 flagellar biosynthesi 69.1 3.5 7.6E-05 45.9 2.7 18 265-282 174-191 (388)
124 PF00004 AAA: ATPase family as 68.5 1.9 4E-05 38.4 0.4 15 268-282 1-15 (132)
125 PRK13833 conjugal transfer pro 68.3 2.5 5.4E-05 45.9 1.4 27 255-282 135-161 (323)
126 COG4962 CpaF Flp pilus assembl 68.1 2.8 6E-05 46.1 1.6 28 254-282 163-190 (355)
127 cd01130 VirB11-like_ATPase Typ 67.2 3.2 6.9E-05 40.7 1.7 28 254-282 15-42 (186)
128 TIGR03499 FlhF flagellar biosy 67.1 4.3 9.3E-05 42.9 2.8 17 267-283 196-212 (282)
129 PF00580 UvrD-helicase: UvrD/R 66.5 2.3 5.1E-05 43.5 0.7 21 264-284 12-32 (315)
130 PTZ00014 myosin-A; Provisional 66.3 18 0.00038 44.3 8.0 83 248-342 165-256 (821)
131 PTZ00424 helicase 45; Provisio 66.2 3.3 7.1E-05 44.8 1.8 26 255-282 57-82 (401)
132 PF01580 FtsK_SpoIIIE: FtsK/Sp 66.2 1.9 4.1E-05 42.5 -0.1 16 267-282 40-55 (205)
133 PRK11776 ATP-dependent RNA hel 65.9 3.5 7.5E-05 46.0 1.9 26 255-282 33-58 (460)
134 PF05970 PIF1: PIF1-like helic 65.9 3.5 7.7E-05 45.0 2.0 36 244-282 4-39 (364)
135 cd00268 DEADc DEAD-box helicas 65.9 3.8 8.3E-05 39.8 2.0 25 256-282 29-53 (203)
136 PF13086 AAA_11: AAA domain; P 64.5 3.1 6.8E-05 40.3 1.1 27 256-283 9-35 (236)
137 PHA02544 44 clamp loader, smal 64.4 3.2 6.9E-05 43.6 1.2 22 262-283 39-61 (316)
138 PRK09183 transposase/IS protei 64.3 3.3 7.2E-05 43.2 1.3 20 262-283 101-120 (259)
139 PF02562 PhoH: PhoH-like prote 63.8 4.8 0.0001 41.1 2.3 24 257-282 13-36 (205)
140 PF06309 Torsin: Torsin; Inte 63.5 2.8 6E-05 39.9 0.5 15 268-282 56-70 (127)
141 PF13671 AAA_33: AAA domain; P 63.4 2.8 6.1E-05 38.2 0.5 15 268-282 2-16 (143)
142 TIGR00348 hsdR type I site-spe 62.3 5.2 0.00011 47.4 2.5 31 252-283 246-281 (667)
143 PRK11192 ATP-dependent RNA hel 62.2 4.4 9.5E-05 44.8 1.8 26 255-282 30-55 (434)
144 PRK13342 recombination factor 61.9 4.6 9.9E-05 44.8 1.9 38 245-282 16-53 (413)
145 PRK13851 type IV secretion sys 61.5 3 6.4E-05 45.7 0.4 29 253-282 151-179 (344)
146 PF00910 RNA_helicase: RNA hel 60.8 2.5 5.5E-05 37.9 -0.3 15 268-282 1-15 (107)
147 PF05496 RuvB_N: Holliday junc 60.7 8.7 0.00019 40.2 3.5 43 240-282 23-67 (233)
148 PRK04837 ATP-dependent RNA hel 60.5 4.7 0.0001 44.4 1.7 26 255-282 37-62 (423)
149 PF13238 AAA_18: AAA domain; P 60.4 3.5 7.5E-05 36.5 0.5 15 268-282 1-15 (129)
150 PF03215 Rad17: Rad17 cell cyc 60.3 4.9 0.00011 46.4 1.9 31 252-282 30-62 (519)
151 KOG0743 AAA+-type ATPase [Post 59.9 5.3 0.00011 45.3 1.9 46 267-313 237-282 (457)
152 PRK13764 ATPase; Provisional 59.3 4.5 9.7E-05 47.6 1.3 18 265-282 257-274 (602)
153 KOG0728 26S proteasome regulat 58.9 87 0.0019 33.8 10.4 46 265-316 181-226 (404)
154 PF06414 Zeta_toxin: Zeta toxi 58.9 4 8.6E-05 40.4 0.7 19 264-282 14-32 (199)
155 PF07724 AAA_2: AAA domain (Cd 58.6 4.1 8.9E-05 40.0 0.8 17 266-282 4-20 (171)
156 PRK10590 ATP-dependent RNA hel 58.5 5.8 0.00013 44.4 2.0 26 255-282 30-55 (456)
157 PF07728 AAA_5: AAA domain (dy 58.5 3.2 7E-05 38.1 0.0 15 268-282 2-16 (139)
158 TIGR02788 VirB11 P-type DNA tr 58.4 5.9 0.00013 42.3 1.9 29 253-282 133-161 (308)
159 PRK10865 protein disaggregatio 58.3 7.8 0.00017 47.3 3.2 44 235-282 566-615 (857)
160 PRK04195 replication factor C 58.0 7.2 0.00016 44.2 2.7 37 246-282 19-56 (482)
161 KOG3850 Predicted membrane pro 57.9 80 0.0017 35.5 10.3 45 120-164 261-305 (455)
162 KOG0447 Dynamin-like GTP bindi 57.7 2.5E+02 0.0054 33.5 14.4 26 333-364 398-423 (980)
163 PRK06547 hypothetical protein; 56.0 8.9 0.00019 37.7 2.6 28 255-282 5-32 (172)
164 COG2256 MGS1 ATPase related to 55.9 6.4 0.00014 44.2 1.7 80 235-320 22-101 (436)
165 KOG0989 Replication factor C, 55.9 8.1 0.00018 42.2 2.4 23 260-282 52-74 (346)
166 PRK00080 ruvB Holliday junctio 55.1 7.3 0.00016 41.7 2.0 39 245-283 29-69 (328)
167 PHA00729 NTP-binding motif con 54.9 9.3 0.0002 39.7 2.6 60 255-315 7-76 (226)
168 PRK06851 hypothetical protein; 54.4 2.2E+02 0.0048 31.8 13.3 27 256-282 205-231 (367)
169 COG1201 Lhr Lhr-like helicases 54.3 8.9 0.00019 46.6 2.7 26 255-282 29-54 (814)
170 PLN03025 replication factor C 54.1 6.8 0.00015 41.8 1.6 42 235-283 11-52 (319)
171 TIGR02881 spore_V_K stage V sp 53.4 5.1 0.00011 41.4 0.5 17 266-282 43-59 (261)
172 PF14723 SSFA2_C: Sperm-specif 53.4 39 0.00084 34.0 6.5 41 83-126 82-122 (179)
173 PRK00440 rfc replication facto 53.2 6.2 0.00013 41.1 1.1 21 262-282 35-55 (319)
174 TIGR00614 recQ_fam ATP-depende 53.0 8.5 0.00018 43.4 2.2 26 255-282 18-43 (470)
175 PRK14722 flhF flagellar biosyn 52.7 5.4 0.00012 44.3 0.6 18 266-283 138-155 (374)
176 PRK00771 signal recognition pa 52.6 13 0.00029 42.0 3.6 18 265-282 95-112 (437)
177 KOG4603 TBP-1 interacting prot 52.3 1.2E+02 0.0026 30.7 9.6 66 121-186 88-180 (201)
178 PF04156 IncA: IncA protein; 52.2 1.2E+02 0.0025 29.9 9.8 35 117-151 86-120 (191)
179 TIGR01241 FtsH_fam ATP-depende 51.3 5 0.00011 45.6 -0.0 46 233-282 51-105 (495)
180 PRK11889 flhF flagellar biosyn 51.0 11 0.00023 42.8 2.4 18 266-283 242-259 (436)
181 PRK11448 hsdR type I restricti 50.6 8.5 0.00018 48.4 1.8 28 255-283 424-451 (1123)
182 PRK01297 ATP-dependent RNA hel 50.4 8.7 0.00019 43.2 1.7 26 255-282 116-141 (475)
183 PRK05703 flhF flagellar biosyn 50.4 11 0.00023 42.4 2.5 18 267-284 223-240 (424)
184 PRK13341 recombination factor 49.9 9 0.00019 46.1 1.8 44 235-282 26-69 (725)
185 COG1219 ClpX ATP-dependent pro 49.7 7.1 0.00015 42.9 0.8 17 265-281 97-113 (408)
186 PRK10536 hypothetical protein; 49.6 9.8 0.00021 40.4 1.9 41 233-282 51-91 (262)
187 KOG2373 Predicted mitochondria 49.6 15 0.00032 41.0 3.2 27 255-282 261-290 (514)
188 PRK11634 ATP-dependent RNA hel 49.4 9.5 0.00021 45.0 1.9 26 255-282 35-60 (629)
189 PF12775 AAA_7: P-loop contain 49.4 8.6 0.00019 40.6 1.4 27 255-282 24-50 (272)
190 COG1223 Predicted ATPase (AAA+ 49.3 6.7 0.00015 42.1 0.6 46 232-282 116-168 (368)
191 KOG2655 Septin family protein 49.0 22 0.00047 39.6 4.4 24 259-282 15-38 (366)
192 KOG0161 Myosin class II heavy 49.0 29 0.00062 46.0 6.1 85 248-342 150-246 (1930)
193 PF05729 NACHT: NACHT domain 48.9 7.1 0.00015 35.9 0.6 16 267-282 2-17 (166)
194 PRK14961 DNA polymerase III su 48.7 11 0.00023 41.3 2.0 41 235-282 14-55 (363)
195 PRK04537 ATP-dependent RNA hel 48.2 10 0.00022 44.1 1.9 26 255-282 38-63 (572)
196 KOG0926 DEAH-box RNA helicase 48.1 15 0.00032 44.7 3.1 18 265-282 271-288 (1172)
197 PHA02653 RNA helicase NPH-II; 48.1 13 0.00029 44.3 2.8 24 256-281 172-195 (675)
198 PF02456 Adeno_IVa2: Adenoviru 47.7 6.4 0.00014 43.0 0.1 15 268-282 90-104 (369)
199 cd01120 RecA-like_NTPases RecA 47.5 6.6 0.00014 35.7 0.2 15 268-282 2-16 (165)
200 PLN00206 DEAD-box ATP-dependen 47.4 13 0.00028 42.6 2.6 26 255-282 150-175 (518)
201 PRK14974 cell division protein 47.2 16 0.00034 40.1 3.0 18 265-282 140-157 (336)
202 PRK00131 aroK shikimate kinase 47.2 8.7 0.00019 36.0 1.0 17 266-282 5-21 (175)
203 KOG0335 ATP-dependent RNA heli 47.1 8.6 0.00019 44.0 1.0 25 256-282 104-128 (482)
204 TIGR02237 recomb_radB DNA repa 46.9 11 0.00024 37.2 1.6 25 258-282 2-29 (209)
205 TIGR00064 ftsY signal recognit 46.7 17 0.00036 38.4 3.1 18 266-283 73-90 (272)
206 KOG2543 Origin recognition com 46.5 7.2 0.00016 43.7 0.3 17 266-282 31-47 (438)
207 PRK11331 5-methylcytosine-spec 46.4 12 0.00027 42.6 2.2 36 418-457 320-357 (459)
208 PF10267 Tmemb_cc2: Predicted 46.1 1E+02 0.0022 34.9 9.0 48 117-164 210-257 (395)
209 PRK10917 ATP-dependent DNA hel 45.5 14 0.00029 44.0 2.4 40 240-282 260-299 (681)
210 COG0630 VirB11 Type IV secreto 45.3 14 0.00031 39.7 2.4 18 265-282 143-160 (312)
211 PRK10416 signal recognition pa 45.2 17 0.00037 39.3 2.9 17 266-282 115-131 (318)
212 PF07693 KAP_NTPase: KAP famil 44.5 13 0.00028 38.9 1.9 20 263-282 18-37 (325)
213 PRK11034 clpA ATP-dependent Cl 44.4 16 0.00035 44.2 2.8 37 246-282 463-505 (758)
214 smart00763 AAA_PrkA PrkA AAA d 44.2 20 0.00043 39.8 3.2 43 236-282 49-95 (361)
215 cd02021 GntK Gluconate kinase 44.1 9.4 0.0002 35.5 0.7 15 268-282 2-16 (150)
216 TIGR02902 spore_lonB ATP-depen 44.1 14 0.00031 42.6 2.2 42 234-282 62-103 (531)
217 TIGR01618 phage_P_loop phage n 44.0 8.6 0.00019 39.7 0.4 18 265-282 12-29 (220)
218 KOG0953 Mitochondrial RNA heli 43.4 11 0.00023 44.1 1.0 17 267-283 193-209 (700)
219 cd01126 TraG_VirD4 The TraG/Tr 43.3 13 0.00028 40.6 1.6 16 268-283 2-17 (384)
220 TIGR02639 ClpA ATP-dependent C 43.1 17 0.00036 43.6 2.7 37 246-282 459-501 (731)
221 PRK11057 ATP-dependent DNA hel 43.1 16 0.00035 42.7 2.5 25 255-281 32-56 (607)
222 PRK15429 formate hydrogenlyase 43.1 31 0.00068 40.9 4.9 44 234-282 373-416 (686)
223 PHA02244 ATPase-like protein 43.0 21 0.00044 40.0 3.1 23 258-282 114-136 (383)
224 TIGR01359 UMP_CMP_kin_fam UMP- 43.0 10 0.00023 36.3 0.8 15 268-282 2-16 (183)
225 PRK06067 flagellar accessory p 42.9 16 0.00036 36.8 2.2 28 255-282 12-42 (234)
226 TIGR03158 cas3_cyano CRISPR-as 42.7 18 0.00038 39.5 2.6 27 256-282 5-31 (357)
227 PRK06696 uridine kinase; Valid 42.6 22 0.00047 35.9 3.1 21 262-282 19-39 (223)
228 cd01127 TrwB Bacterial conjuga 42.6 8.9 0.00019 42.6 0.3 17 266-282 43-59 (410)
229 TIGR02640 gas_vesic_GvpN gas v 42.4 17 0.00037 37.8 2.3 26 255-282 13-38 (262)
230 TIGR00602 rad24 checkpoint pro 42.4 11 0.00023 44.7 0.9 37 246-282 89-127 (637)
231 PF13476 AAA_23: AAA domain; P 42.1 9.9 0.00021 36.2 0.5 17 266-282 20-36 (202)
232 PRK07261 topology modulation p 41.9 11 0.00024 36.7 0.8 15 268-282 3-17 (171)
233 PF15372 DUF4600: Domain of un 41.9 2.3E+02 0.0049 27.4 9.4 32 166-197 84-115 (129)
234 TIGR01389 recQ ATP-dependent D 41.6 17 0.00036 42.2 2.3 27 254-282 19-45 (591)
235 TIGR01817 nifA Nif-specific re 41.6 13 0.00028 42.6 1.4 45 233-282 192-236 (534)
236 TIGR03819 heli_sec_ATPase heli 41.4 15 0.00033 40.1 1.8 29 253-282 167-195 (340)
237 PRK06995 flhF flagellar biosyn 41.2 10 0.00022 43.6 0.4 18 266-283 257-274 (484)
238 PRK04328 hypothetical protein; 41.0 19 0.00041 37.3 2.3 27 255-281 10-39 (249)
239 cd01428 ADK Adenylate kinase ( 40.8 12 0.00025 36.1 0.8 15 268-282 2-16 (194)
240 PF04728 LPP: Lipoprotein leuc 40.8 2.1E+02 0.0047 23.8 8.1 32 121-152 5-36 (56)
241 cd01123 Rad51_DMC1_radA Rad51_ 40.7 18 0.0004 36.1 2.2 28 255-282 6-36 (235)
242 TIGR00631 uvrb excinuclease AB 40.6 14 0.0003 43.9 1.5 45 234-282 2-46 (655)
243 PHA01747 putative ATP-dependen 40.4 17 0.00037 40.8 2.0 30 253-282 178-207 (425)
244 PRK05580 primosome assembly pr 40.3 17 0.00037 43.3 2.1 37 240-282 143-179 (679)
245 cd02020 CMPK Cytidine monophos 40.1 12 0.00027 34.0 0.8 15 268-282 2-16 (147)
246 TIGR02746 TraC-F-type type-IV 40.1 10 0.00022 45.4 0.2 18 265-282 430-447 (797)
247 PRK11664 ATP-dependent RNA hel 40.0 21 0.00046 43.5 2.9 33 248-282 5-37 (812)
248 TIGR00376 DNA helicase, putati 40.0 16 0.00035 43.2 1.9 27 256-283 165-191 (637)
249 TIGR03345 VI_ClpV1 type VI sec 39.7 22 0.00048 43.5 3.0 41 238-282 567-613 (852)
250 TIGR01313 therm_gnt_kin carboh 39.5 10 0.00022 35.8 0.1 14 268-281 1-14 (163)
251 CHL00081 chlI Mg-protoporyphyr 39.4 10 0.00022 41.8 0.1 45 231-282 11-55 (350)
252 PRK11131 ATP-dependent RNA hel 39.4 19 0.00041 46.0 2.4 32 249-282 75-106 (1294)
253 PRK14962 DNA polymerase III su 39.3 20 0.00044 40.9 2.4 41 235-282 12-53 (472)
254 cd00464 SK Shikimate kinase (S 39.3 12 0.00026 34.5 0.6 16 267-282 1-16 (154)
255 PTZ00110 helicase; Provisional 39.3 16 0.00034 42.3 1.6 25 256-282 160-184 (545)
256 COG1222 RPT1 ATP-dependent 26S 39.1 70 0.0015 35.9 6.3 45 266-316 186-230 (406)
257 PRK10884 SH3 domain-containing 39.0 1.3E+02 0.0028 30.9 8.0 22 16-37 27-48 (206)
258 PRK08118 topology modulation p 38.8 13 0.00029 36.1 0.8 15 268-282 4-18 (167)
259 TIGR02688 conserved hypothetic 38.8 39 0.00084 38.6 4.5 26 255-282 201-226 (449)
260 PRK09361 radB DNA repair and r 38.6 24 0.00052 35.3 2.6 28 255-282 10-40 (225)
261 PLN00020 ribulose bisphosphate 38.6 22 0.00048 39.9 2.6 52 231-282 109-165 (413)
262 PF13173 AAA_14: AAA domain 38.4 12 0.00026 34.3 0.4 17 267-283 4-20 (128)
263 KOG0354 DEAD-box like helicase 38.4 22 0.00048 42.8 2.6 43 237-282 44-93 (746)
264 PRK01172 ski2-like helicase; P 38.4 20 0.00044 42.3 2.3 25 256-282 30-54 (674)
265 cd01983 Fer4_NifH The Fer4_Nif 38.0 13 0.00028 30.6 0.5 15 268-282 2-16 (99)
266 TIGR00643 recG ATP-dependent D 37.8 20 0.00044 42.1 2.2 40 240-282 234-273 (630)
267 PF13555 AAA_29: P-loop contai 37.8 11 0.00025 31.5 0.1 15 268-282 26-40 (62)
268 PRK12724 flagellar biosynthesi 37.7 24 0.00051 40.1 2.6 18 266-283 224-241 (432)
269 PRK13767 ATP-dependent helicas 37.7 19 0.00041 44.2 2.0 25 256-282 40-64 (876)
270 PRK08233 hypothetical protein; 37.5 14 0.0003 35.1 0.7 15 268-282 6-20 (182)
271 PF10236 DAP3: Mitochondrial r 37.5 22 0.00047 38.3 2.2 22 261-282 19-40 (309)
272 PRK06851 hypothetical protein; 37.3 30 0.00064 38.5 3.3 27 256-282 21-47 (367)
273 PF06048 DUF927: Domain of unk 37.0 24 0.00053 37.3 2.5 28 254-282 183-210 (286)
274 TIGR03744 traC_PFL_4706 conjug 36.7 12 0.00026 45.9 0.2 19 264-282 474-492 (893)
275 COG1125 OpuBA ABC-type proline 36.7 13 0.00028 39.9 0.4 29 421-457 185-213 (309)
276 cd01394 radB RadB. The archaea 36.5 26 0.00055 34.8 2.4 28 256-283 7-37 (218)
277 TIGR02322 phosphon_PhnN phosph 36.3 13 0.00029 35.6 0.4 16 267-282 3-18 (179)
278 PF04799 Fzo_mitofusin: fzo-li 36.3 1.6E+02 0.0034 29.7 7.8 42 130-171 106-147 (171)
279 TIGR02397 dnaX_nterm DNA polym 36.2 24 0.00051 37.5 2.3 34 246-282 19-53 (355)
280 TIGR02903 spore_lon_C ATP-depe 36.0 24 0.00051 41.7 2.4 42 234-282 151-192 (615)
281 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.7 2.1E+02 0.0044 27.0 8.2 28 126-153 24-51 (132)
282 PRK12726 flagellar biosynthesi 35.7 14 0.00031 41.5 0.5 18 266-283 207-224 (407)
283 PRK10867 signal recognition pa 35.6 32 0.0007 39.0 3.3 19 265-283 100-118 (433)
284 TIGR03817 DECH_helic helicase/ 35.5 25 0.00053 42.4 2.5 26 255-282 43-68 (742)
285 CHL00181 cbbX CbbX; Provisiona 35.2 15 0.00033 39.0 0.7 15 268-282 62-76 (287)
286 PF07798 DUF1640: Protein of u 35.2 2.4E+02 0.0051 27.9 8.9 42 118-159 65-106 (177)
287 PF00485 PRK: Phosphoribulokin 35.2 14 0.0003 36.4 0.3 15 268-282 2-16 (194)
288 KOG3859 Septins (P-loop GTPase 35.2 22 0.00048 38.6 1.8 27 256-282 32-59 (406)
289 cd02023 UMPK Uridine monophosp 35.1 13 0.00029 36.4 0.1 15 268-282 2-16 (198)
290 PRK06217 hypothetical protein; 35.0 16 0.00034 35.6 0.7 15 268-282 4-18 (183)
291 PRK14952 DNA polymerase III su 34.9 22 0.00049 41.7 2.0 41 235-282 11-52 (584)
292 PRK10820 DNA-binding transcrip 34.5 17 0.00037 41.7 0.9 46 232-282 199-244 (520)
293 KOG0330 ATP-dependent RNA heli 34.4 23 0.0005 39.9 1.8 26 255-282 90-115 (476)
294 TIGR02173 cyt_kin_arch cytidyl 34.4 17 0.00036 34.2 0.7 16 267-282 2-17 (171)
295 PRK14531 adenylate kinase; Pro 34.4 17 0.00037 35.4 0.8 16 267-282 4-19 (183)
296 TIGR02880 cbbX_cfxQ probable R 34.3 15 0.00032 38.9 0.4 15 268-282 61-75 (284)
297 CHL00176 ftsH cell division pr 34.2 23 0.0005 42.0 1.9 46 233-282 179-233 (638)
298 TIGR03881 KaiC_arch_4 KaiC dom 33.9 27 0.00058 35.0 2.1 27 256-282 8-37 (229)
299 cd01124 KaiC KaiC is a circadi 33.9 19 0.00041 34.4 1.0 15 268-282 2-16 (187)
300 PF02534 T4SS-DNA_transf: Type 33.9 28 0.00061 38.9 2.5 18 266-283 45-62 (469)
301 cd02025 PanK Pantothenate kina 33.7 11 0.00024 38.3 -0.6 12 271-282 5-16 (220)
302 PRK14721 flhF flagellar biosyn 33.6 16 0.00035 41.2 0.5 18 265-282 191-208 (420)
303 TIGR01360 aden_kin_iso1 adenyl 33.6 18 0.0004 34.5 0.8 16 267-282 5-20 (188)
304 PF07106 TBPIP: Tat binding pr 33.3 2.3E+02 0.005 27.6 8.5 22 125-146 85-106 (169)
305 TIGR00231 small_GTP small GTP- 33.3 15 0.00032 32.4 0.1 15 268-282 4-18 (161)
306 PRK14532 adenylate kinase; Pro 33.2 20 0.00043 34.7 1.0 16 267-282 2-17 (188)
307 PF10412 TrwB_AAD_bind: Type I 33.1 14 0.0003 40.9 -0.1 16 267-282 17-32 (386)
308 PRK14963 DNA polymerase III su 33.1 20 0.00043 41.4 1.1 42 235-282 12-53 (504)
309 PF00931 NB-ARC: NB-ARC domain 33.1 36 0.00078 34.8 2.9 31 253-283 5-37 (287)
310 TIGR00929 VirB4_CagE type IV s 33.1 16 0.00034 43.6 0.3 18 265-282 434-451 (785)
311 cd01853 Toc34_like Toc34-like 33.0 18 0.0004 37.7 0.8 39 242-282 10-48 (249)
312 COG5019 CDC3 Septin family pro 33.0 24 0.00053 39.2 1.7 21 262-282 20-40 (373)
313 cd01393 recA_like RecA is a b 32.9 34 0.00075 33.9 2.7 29 255-283 6-37 (226)
314 PF06745 KaiC: KaiC; InterPro 32.5 27 0.00058 35.0 1.8 26 257-282 8-36 (226)
315 PF08477 Miro: Miro-like prote 32.4 20 0.00044 31.4 0.9 15 268-282 2-16 (119)
316 PF08581 Tup_N: Tup N-terminal 32.3 2.3E+02 0.005 25.0 7.3 48 119-166 4-54 (79)
317 PF04548 AIG1: AIG1 family; I 32.1 19 0.00042 36.1 0.8 16 267-282 2-17 (212)
318 KOG0727 26S proteasome regulat 32.1 4.8E+02 0.01 28.5 10.9 48 234-281 152-205 (408)
319 PF00158 Sigma54_activat: Sigm 32.0 32 0.00069 33.7 2.2 21 262-282 19-39 (168)
320 PF05667 DUF812: Protein of un 31.9 2E+02 0.0043 34.2 8.9 72 120-191 322-396 (594)
321 TIGR03117 cas_csf4 CRISPR-asso 31.6 27 0.00059 41.5 1.9 32 246-282 2-33 (636)
322 TIGR01970 DEAH_box_HrpB ATP-de 31.4 30 0.00065 42.3 2.3 26 255-282 9-34 (819)
323 PRK06762 hypothetical protein; 31.3 22 0.00047 33.7 0.9 15 267-281 4-18 (166)
324 TIGR03346 chaperone_ClpB ATP-d 31.3 35 0.00075 41.8 2.8 41 238-282 566-612 (852)
325 PF12774 AAA_6: Hydrolytic ATP 31.3 25 0.00055 36.4 1.5 16 267-282 34-49 (231)
326 cd03274 ABC_SMC4_euk Eukaryoti 31.1 15 0.00032 37.2 -0.3 15 268-282 28-42 (212)
327 TIGR03689 pup_AAA proteasome A 31.0 18 0.0004 41.8 0.4 16 267-282 218-233 (512)
328 PRK10689 transcription-repair 30.9 30 0.00066 43.8 2.3 18 265-282 621-638 (1147)
329 CHL00195 ycf46 Ycf46; Provisio 30.7 19 0.00042 41.3 0.5 17 266-282 260-276 (489)
330 PF08317 Spc7: Spc7 kinetochor 30.6 3.2E+02 0.0069 29.6 9.8 16 174-189 278-293 (325)
331 PRK04040 adenylate kinase; Pro 30.6 21 0.00046 35.5 0.7 16 267-282 4-19 (188)
332 PRK08691 DNA polymerase III su 30.5 28 0.0006 41.9 1.8 41 235-282 14-55 (709)
333 PF03961 DUF342: Protein of un 30.4 8.4E+02 0.018 27.6 13.4 80 117-199 332-422 (451)
334 KOG1962 B-cell receptor-associ 30.3 2.1E+02 0.0046 29.8 7.8 19 167-185 192-210 (216)
335 PRK05342 clpX ATP-dependent pr 30.2 36 0.00078 38.3 2.5 18 265-282 108-125 (412)
336 cd01858 NGP_1 NGP-1. Autoanti 30.1 32 0.00069 32.5 1.8 20 263-282 100-119 (157)
337 cd00820 PEPCK_HprK Phosphoenol 30.1 21 0.00045 33.0 0.5 16 267-282 17-32 (107)
338 smart00488 DEXDc2 DEAD-like he 30.1 31 0.00068 36.6 1.9 37 242-283 9-45 (289)
339 smart00489 DEXDc3 DEAD-like he 30.1 31 0.00068 36.6 1.9 37 242-283 9-45 (289)
340 PRK00300 gmk guanylate kinase; 30.0 20 0.00044 35.1 0.5 17 266-282 6-22 (205)
341 KOG1803 DNA helicase [Replicat 29.9 21 0.00045 42.1 0.6 16 267-282 203-218 (649)
342 PRK14729 miaA tRNA delta(2)-is 29.8 25 0.00054 38.0 1.2 17 267-283 6-22 (300)
343 TIGR02236 recomb_radA DNA repa 29.6 39 0.00085 35.8 2.6 28 256-283 83-113 (310)
344 COG2433 Uncharacterized conser 29.2 3.6E+02 0.0077 32.3 10.1 37 117-153 427-463 (652)
345 COG1122 CbiO ABC-type cobalt t 29.2 24 0.00053 36.7 0.9 17 266-282 31-47 (235)
346 TIGR01587 cas3_core CRISPR-ass 29.1 25 0.00054 37.6 1.0 15 268-282 2-16 (358)
347 TIGR01613 primase_Cterm phage/ 29.1 54 0.0012 34.8 3.5 30 253-282 61-93 (304)
348 TIGR01425 SRP54_euk signal rec 29.0 47 0.001 37.7 3.2 18 265-282 100-117 (429)
349 PRK14530 adenylate kinase; Pro 28.9 23 0.0005 35.4 0.7 16 267-282 5-20 (215)
350 PHA02624 large T antigen; Prov 28.7 39 0.00085 40.1 2.5 26 256-281 420-447 (647)
351 KOG0340 ATP-dependent RNA heli 28.7 32 0.0007 38.4 1.7 27 254-282 35-61 (442)
352 PRK14527 adenylate kinase; Pro 28.6 26 0.00057 34.3 1.0 17 266-282 7-23 (191)
353 TIGR03263 guanyl_kin guanylate 28.2 27 0.00058 33.4 1.0 16 267-282 3-18 (180)
354 PRK03839 putative kinase; Prov 28.2 24 0.00052 34.0 0.7 14 268-281 3-16 (180)
355 PF14532 Sigma54_activ_2: Sigm 28.2 25 0.00055 32.6 0.8 20 263-282 19-38 (138)
356 PRK14951 DNA polymerase III su 28.1 33 0.00072 40.7 1.9 41 235-282 14-55 (618)
357 TIGR00382 clpX endopeptidase C 28.1 23 0.00051 39.9 0.6 17 266-282 117-133 (413)
358 TIGR03877 thermo_KaiC_1 KaiC d 28.0 41 0.00089 34.3 2.3 26 256-281 9-37 (237)
359 COG3842 PotA ABC-type spermidi 27.9 17 0.00036 40.2 -0.5 13 270-282 36-48 (352)
360 PRK14970 DNA polymerase III su 27.6 37 0.00081 36.7 2.0 41 235-282 15-56 (367)
361 TIGR01351 adk adenylate kinase 27.4 26 0.00057 34.9 0.8 15 268-282 2-16 (210)
362 PRK09401 reverse gyrase; Revie 27.4 41 0.00089 42.8 2.6 24 256-281 88-111 (1176)
363 PRK13889 conjugal transfer rel 27.3 33 0.00072 42.8 1.7 28 254-282 352-379 (988)
364 PRK11608 pspF phage shock prot 27.1 33 0.00072 37.0 1.5 42 236-282 5-46 (326)
365 TIGR01074 rep ATP-dependent DN 27.0 26 0.00057 41.1 0.8 18 265-282 14-31 (664)
366 PRK13721 conjugal transfer ATP 27.0 23 0.00049 43.2 0.3 17 266-282 450-466 (844)
367 cd02027 APSK Adenosine 5'-phos 27.0 25 0.00054 33.4 0.5 15 268-282 2-16 (149)
368 PRK10078 ribose 1,5-bisphospho 26.9 24 0.00051 34.5 0.4 16 267-282 4-19 (186)
369 CHL00095 clpC Clp protease ATP 26.9 47 0.001 40.5 2.9 37 246-282 514-556 (821)
370 TIGR00959 ffh signal recogniti 26.9 29 0.00064 39.2 1.1 18 265-282 99-116 (428)
371 TIGR00580 mfd transcription-re 26.7 36 0.00077 42.3 1.9 20 263-282 470-489 (926)
372 cd03279 ABC_sbcCD SbcCD and ot 26.7 25 0.00055 35.1 0.5 16 267-282 30-45 (213)
373 PF10923 DUF2791: P-loop Domai 26.7 48 0.0011 37.5 2.8 35 248-282 32-66 (416)
374 KOG0739 AAA+-type ATPase [Post 26.6 28 0.0006 38.3 0.8 75 235-315 131-210 (439)
375 TIGR01967 DEAH_box_HrpA ATP-de 26.6 47 0.001 42.7 2.8 23 259-282 77-99 (1283)
376 KOG1514 Origin recognition com 26.5 38 0.00083 40.7 2.0 34 249-282 404-439 (767)
377 PRK14957 DNA polymerase III su 26.5 31 0.00067 40.3 1.2 41 235-282 14-55 (546)
378 PRK13873 conjugal transfer ATP 26.4 26 0.00057 42.5 0.6 16 267-282 443-458 (811)
379 PRK12727 flagellar biosynthesi 26.4 25 0.00054 41.1 0.4 17 266-282 351-367 (559)
380 TIGR02030 BchI-ChlI magnesium 26.3 39 0.00086 37.0 1.9 29 254-282 14-42 (337)
381 cd03240 ABC_Rad50 The catalyti 26.2 25 0.00055 35.2 0.4 16 267-282 24-39 (204)
382 cd03115 SRP The signal recogni 26.2 26 0.00056 33.5 0.5 16 268-283 3-18 (173)
383 PRK09270 nucleoside triphospha 26.2 53 0.0011 33.3 2.7 20 263-282 31-50 (229)
384 TIGR01650 PD_CobS cobaltochela 26.0 42 0.00091 36.8 2.1 39 242-282 41-81 (327)
385 PRK11388 DNA-binding transcrip 26.0 31 0.00067 40.4 1.1 45 233-282 321-365 (638)
386 TIGR00235 udk uridine kinase. 25.9 28 0.00061 34.6 0.7 16 267-282 8-23 (207)
387 TIGR01054 rgy reverse gyrase. 25.9 42 0.0009 42.7 2.3 26 255-282 85-110 (1171)
388 KOG0729 26S proteasome regulat 25.8 34 0.00073 37.1 1.2 45 266-316 212-256 (435)
389 PRK13853 type IV secretion sys 25.6 22 0.00048 43.0 -0.2 17 266-282 427-443 (789)
390 cd03272 ABC_SMC3_euk Eukaryoti 25.6 27 0.00058 35.2 0.5 16 267-282 25-40 (243)
391 PRK00279 adk adenylate kinase; 25.5 30 0.00065 34.6 0.8 15 267-281 2-16 (215)
392 PTZ00301 uridine kinase; Provi 25.4 22 0.00049 36.1 -0.1 12 270-281 8-19 (210)
393 PRK06305 DNA polymerase III su 25.4 41 0.00088 38.2 1.9 41 235-282 15-56 (451)
394 PRK13891 conjugal transfer pro 25.1 26 0.00057 42.9 0.3 18 265-282 488-505 (852)
395 KOG0348 ATP-dependent RNA heli 25.1 42 0.00091 39.3 1.9 73 254-343 165-248 (708)
396 PRK15424 propionate catabolism 25.1 47 0.001 38.8 2.3 45 233-282 215-259 (538)
397 PRK15455 PrkA family serine pr 25.0 48 0.001 39.4 2.4 42 236-281 75-119 (644)
398 PRK11637 AmiB activator; Provi 24.9 2.2E+02 0.0048 31.9 7.5 17 467-483 235-251 (428)
399 TIGR01243 CDC48 AAA family ATP 24.9 33 0.00072 41.1 1.1 17 266-282 213-229 (733)
400 PF01926 MMR_HSR1: 50S ribosom 24.9 24 0.00052 31.2 -0.0 15 268-282 2-16 (116)
401 KOG2129 Uncharacterized conser 24.8 9.3E+02 0.02 27.8 11.9 32 120-151 254-285 (552)
402 TIGR01547 phage_term_2 phage t 24.8 27 0.00059 38.2 0.4 16 267-282 3-18 (396)
403 PRK04182 cytidylate kinase; Pr 24.8 33 0.00072 32.4 0.9 16 267-282 2-17 (180)
404 COG0467 RAD55 RecA-superfamily 24.7 48 0.001 34.2 2.1 26 257-282 12-40 (260)
405 PRK13880 conjugal transfer cou 24.7 43 0.00094 39.7 2.0 18 266-283 176-193 (636)
406 PRK04301 radA DNA repair and r 24.6 56 0.0012 34.9 2.7 26 257-282 91-119 (317)
407 KOG0344 ATP-dependent RNA heli 24.6 34 0.00075 40.0 1.1 26 255-282 165-190 (593)
408 TIGR02759 TraD_Ftype type IV c 24.6 26 0.00057 41.0 0.2 16 267-282 178-193 (566)
409 TIGR02768 TraA_Ti Ti-type conj 24.5 41 0.00088 40.7 1.8 27 255-282 359-385 (744)
410 PHA02530 pseT polynucleotide k 24.4 33 0.00071 35.7 0.9 15 267-281 4-18 (300)
411 COG4096 HsdR Type I site-speci 24.4 66 0.0014 39.4 3.4 36 246-282 165-202 (875)
412 PF05872 DUF853: Bacterial pro 24.2 24 0.00051 40.6 -0.3 19 562-580 395-413 (502)
413 KOG0735 AAA+-type ATPase [Post 24.2 32 0.0007 41.6 0.8 49 263-317 699-747 (952)
414 cd00071 GMPK Guanosine monopho 24.2 35 0.00075 32.0 0.9 15 268-282 2-16 (137)
415 TIGR02329 propionate_PrpR prop 24.2 37 0.00081 39.4 1.3 45 233-282 208-252 (526)
416 PRK00091 miaA tRNA delta(2)-is 24.2 34 0.00074 37.0 1.0 16 267-282 6-21 (307)
417 COG3839 MalK ABC-type sugar tr 24.2 29 0.00063 38.2 0.4 15 268-282 32-46 (338)
418 PF00025 Arf: ADP-ribosylation 24.1 48 0.0011 32.0 1.9 27 256-282 4-31 (175)
419 TIGR03238 dnd_assoc_3 dnd syst 24.1 45 0.00098 38.6 1.9 31 253-283 14-50 (504)
420 TIGR03574 selen_PSTK L-seryl-t 24.0 31 0.00068 35.2 0.6 15 268-282 2-16 (249)
421 cd00227 CPT Chloramphenicol (C 23.9 33 0.00071 33.1 0.7 16 267-282 4-19 (175)
422 PF02367 UPF0079: Uncharacteri 23.7 36 0.00079 32.1 0.9 25 257-282 8-32 (123)
423 PLN02200 adenylate kinase fami 23.7 36 0.00078 35.1 1.0 16 266-281 44-59 (234)
424 KOG0350 DEAD-box ATP-dependent 23.7 1.5E+02 0.0033 34.7 5.8 17 263-281 183-199 (620)
425 KOG1532 GTPase XAB1, interacts 23.6 35 0.00076 37.1 0.9 18 265-282 19-36 (366)
426 PRK02496 adk adenylate kinase; 23.6 34 0.00074 33.1 0.8 15 268-282 4-18 (184)
427 COG0513 SrmB Superfamily II DN 23.6 46 0.001 38.3 1.9 27 254-282 57-83 (513)
428 TIGR00390 hslU ATP-dependent p 23.5 34 0.00074 39.0 0.8 17 266-282 48-64 (441)
429 TIGR01243 CDC48 AAA family ATP 23.5 35 0.00076 40.8 1.0 17 266-282 488-504 (733)
430 PRK14955 DNA polymerase III su 23.4 51 0.0011 36.5 2.1 40 235-282 14-55 (397)
431 COG1136 SalX ABC-type antimicr 23.3 28 0.00061 36.2 0.1 15 268-282 34-48 (226)
432 COG0324 MiaA tRNA delta(2)-iso 23.3 37 0.00081 36.9 1.0 17 267-283 5-21 (308)
433 TIGR03783 Bac_Flav_CT_G Bacter 23.3 28 0.0006 42.6 0.1 18 265-282 438-455 (829)
434 PRK09302 circadian clock prote 23.2 51 0.0011 37.6 2.1 28 255-282 18-48 (509)
435 KOG0745 Putative ATP-dependent 23.2 37 0.0008 38.9 1.0 16 266-281 227-242 (564)
436 smart00072 GuKc Guanylate kina 23.0 98 0.0021 30.2 3.8 49 267-316 4-67 (184)
437 PF01745 IPT: Isopentenyl tran 23.0 30 0.00066 36.2 0.3 15 268-282 4-18 (233)
438 KOG0741 AAA+-type ATPase [Post 22.9 65 0.0014 37.9 2.9 50 267-318 258-315 (744)
439 KOG0652 26S proteasome regulat 22.9 38 0.00081 36.6 0.9 20 267-287 207-226 (424)
440 cd02028 UMPK_like Uridine mono 22.9 35 0.00075 33.5 0.7 15 268-282 2-16 (179)
441 PRK11545 gntK gluconate kinase 22.9 22 0.00049 34.3 -0.7 12 271-282 1-12 (163)
442 PRK05022 anaerobic nitric oxid 22.9 42 0.00091 38.4 1.4 43 235-282 185-227 (509)
443 COG3829 RocR Transcriptional r 22.7 46 0.001 38.9 1.7 44 231-279 239-282 (560)
444 COG4152 ABC-type uncharacteriz 22.7 33 0.00071 36.8 0.5 12 271-282 34-45 (300)
445 PRK05416 glmZ(sRNA)-inactivati 22.6 29 0.00064 37.1 0.1 17 267-283 8-24 (288)
446 PLN02796 D-glycerate 3-kinase 22.6 20 0.00043 39.6 -1.2 15 268-282 103-117 (347)
447 TIGR00174 miaA tRNA isopenteny 22.4 39 0.00085 36.3 1.0 15 268-282 2-16 (287)
448 PRK05057 aroK shikimate kinase 22.4 43 0.00093 32.6 1.2 17 266-282 5-21 (172)
449 PF08317 Spc7: Spc7 kinetochor 22.3 4.6E+02 0.01 28.4 9.1 13 54-66 68-80 (325)
450 cd00880 Era_like Era (E. coli 22.2 24 0.00052 31.1 -0.6 15 353-367 45-59 (163)
451 PRK01184 hypothetical protein; 22.2 37 0.0008 32.8 0.7 15 267-281 3-17 (184)
452 PF10168 Nup88: Nuclear pore c 22.1 8.4E+02 0.018 29.8 12.0 25 167-191 599-623 (717)
453 PRK05480 uridine/cytidine kina 22.1 37 0.0008 33.6 0.7 17 266-282 7-23 (209)
454 PRK14953 DNA polymerase III su 22.1 50 0.0011 37.9 1.8 41 235-282 14-55 (486)
455 PRK14528 adenylate kinase; Pro 22.0 39 0.00084 33.3 0.8 15 268-282 4-18 (186)
456 TIGR02655 circ_KaiC circadian 22.0 55 0.0012 37.3 2.1 27 256-282 9-38 (484)
457 PRK02362 ski2-like helicase; P 22.0 53 0.0012 39.3 2.1 21 260-282 36-56 (737)
458 PF10146 zf-C4H2: Zinc finger- 21.9 4.7E+02 0.01 27.4 8.7 48 117-164 23-73 (230)
459 PRK13830 conjugal transfer pro 21.9 34 0.00073 41.7 0.4 18 265-282 456-473 (818)
460 PF02183 HALZ: Homeobox associ 21.8 1.3E+02 0.0029 23.7 3.6 17 173-189 24-40 (45)
461 TIGR01447 recD exodeoxyribonuc 21.7 46 0.001 39.1 1.5 25 256-282 153-177 (586)
462 PF02463 SMC_N: RecF/RecN/SMC 21.7 42 0.00091 33.3 1.0 16 267-282 26-41 (220)
463 KOG2391 Vacuolar sorting prote 21.7 7.9E+02 0.017 27.5 10.5 47 122-168 224-270 (365)
464 COG0606 Predicted ATPase with 21.5 39 0.00085 38.9 0.8 27 256-284 191-217 (490)
465 PRK14960 DNA polymerase III su 21.5 60 0.0013 39.1 2.3 41 235-282 13-54 (702)
466 PRK05541 adenylylsulfate kinas 21.5 42 0.0009 32.2 0.9 16 267-282 9-24 (176)
467 PF13805 Pil1: Eisosome compon 21.4 4.5E+02 0.0097 28.4 8.5 64 126-189 96-159 (271)
468 cd02019 NK Nucleoside/nucleoti 21.4 45 0.00097 27.6 0.9 15 268-282 2-16 (69)
469 TIGR00678 holB DNA polymerase 21.4 60 0.0013 31.6 1.9 25 258-282 6-31 (188)
470 PHA00276 phage lambda Rz-like 21.3 6.4E+02 0.014 24.9 8.8 15 188-202 81-95 (144)
471 cd02022 DPCK Dephospho-coenzym 21.2 39 0.00085 32.9 0.7 15 268-282 2-16 (179)
472 cd01860 Rab5_related Rab5-rela 21.2 50 0.0011 30.3 1.3 17 266-282 2-18 (163)
473 cd01876 YihA_EngB The YihA (En 21.2 33 0.00072 31.0 0.1 15 268-282 2-16 (170)
474 COG5245 DYN1 Dynein, heavy cha 21.1 56 0.0012 42.9 2.0 52 264-315 1493-1544(3164)
475 cd00544 CobU Adenosylcobinamid 21.1 44 0.00096 32.8 1.0 15 268-282 2-16 (169)
476 COG5022 Myosin heavy chain [Cy 21.1 84 0.0018 40.6 3.5 35 248-282 134-169 (1463)
477 cd00983 recA RecA is a bacter 21.1 72 0.0016 34.9 2.7 29 254-282 40-72 (325)
478 PRK13946 shikimate kinase; Pro 21.0 42 0.00091 32.8 0.8 18 265-282 10-27 (184)
479 KOG0390 DNA repair protein, SN 21.0 41 0.00089 40.9 0.8 38 245-283 242-281 (776)
480 PF09763 Sec3_C: Exocyst compl 21.0 3.2E+02 0.007 32.7 8.2 68 126-193 30-100 (701)
481 PF03193 DUF258: Protein of un 20.9 48 0.001 32.8 1.2 25 256-282 28-52 (161)
482 TIGR03880 KaiC_arch_3 KaiC dom 20.9 68 0.0015 32.1 2.3 26 257-282 5-33 (224)
483 TIGR01069 mutS2 MutS2 family p 20.9 4.3E+02 0.0094 32.3 9.4 13 53-65 403-415 (771)
484 PF00625 Guanylate_kin: Guanyl 20.9 97 0.0021 30.1 3.3 48 268-316 5-67 (183)
485 TIGR02621 cas3_GSU0051 CRISPR- 20.9 57 0.0012 40.1 2.0 27 255-282 22-48 (844)
486 PRK13729 conjugal transfer pil 20.9 3.2E+02 0.007 31.7 7.7 31 117-147 67-97 (475)
487 KOG0987 DNA helicase PIF1/RRM3 20.8 72 0.0016 37.1 2.8 35 244-282 120-154 (540)
488 COG0563 Adk Adenylate kinase a 20.8 43 0.00094 33.2 0.9 14 268-281 3-16 (178)
489 PRK05563 DNA polymerase III su 20.7 62 0.0013 37.8 2.2 41 235-282 14-55 (559)
490 KOG1547 Septin CDC10 and relat 20.6 94 0.002 33.4 3.2 20 262-281 43-62 (336)
491 TIGR00176 mobB molybdopterin-g 20.5 35 0.00076 32.9 0.1 14 269-282 3-16 (155)
492 TIGR02639 ClpA ATP-dependent C 20.5 59 0.0013 39.1 2.0 29 254-282 192-220 (731)
493 PF13481 AAA_25: AAA domain; P 20.4 41 0.00088 32.4 0.6 26 257-282 21-49 (193)
494 TIGR02238 recomb_DMC1 meiotic 20.4 84 0.0018 34.0 3.0 27 256-282 84-113 (313)
495 TIGR00595 priA primosomal prot 20.4 35 0.00076 39.3 0.1 13 270-282 2-14 (505)
496 PRK14949 DNA polymerase III su 20.4 60 0.0013 40.3 2.0 41 235-282 14-55 (944)
497 PRK06645 DNA polymerase III su 20.4 54 0.0012 38.0 1.6 41 235-282 19-60 (507)
498 PRK09825 idnK D-gluconate kina 20.3 38 0.00083 33.2 0.3 16 267-282 5-20 (176)
499 PRK08533 flagellar accessory p 20.2 48 0.001 33.9 1.1 16 265-280 24-39 (230)
500 PF05707 Zot: Zonular occluden 20.1 43 0.00094 33.1 0.7 15 266-280 1-15 (193)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.7e-79 Score=693.15 Aligned_cols=363 Identities=47% Similarity=0.671 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---HHhHHhhhhhhhcCCCeEEEE
Q 047843 119 QLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVV---NENRKLYNMVQDLRGNIRVYC 195 (648)
Q Consensus 119 ~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~err~l~N~l~elkGnIRV~v 195 (648)
+-++..+.++.+|+..+..++.+...+...+++.+..+..++.++......|.... .+||+|||+|+||||||||||
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIRV~C 320 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIRVFC 320 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEE
Confidence 33777778899999999999999999999999999999988888888877776655 899999999999999999999
Q ss_pred EeCCCCcccCCc---eEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeec
Q 047843 196 RVRPSFRAETKN---VIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYG 272 (648)
Q Consensus 196 RVRP~~~~E~~~---~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYG 272 (648)
||||+.+.+... .+...++.+.+.+..|........+.|.||+||+|.++|++||.++.|+|+++|||||+||||||
T Consensus 321 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYG 400 (670)
T KOG0239|consen 321 RVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYG 400 (670)
T ss_pred EecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEec
Confidence 999999888653 23333333557777776655555567999999999999999999999999999999999999999
Q ss_pred ccCCCCceeeeec-c---------------------------------------------------------cCCCCccc
Q 047843 273 QTGSGKTHTMIRS-C---------------------------------------------------------ASENGLNL 294 (648)
Q Consensus 273 QTGSGKTyTMi~~-~---------------------------------------------------------~~~~g~~V 294 (648)
||||||||||-|. . ..++++.|
T Consensus 401 QTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V 480 (670)
T KOG0239|consen 401 QTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMV 480 (670)
T ss_pred ccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceec
Confidence 9999999999441 0 01245789
Q ss_pred CCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcCCCcccCCccchh
Q 047843 295 PDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTG 373 (648)
Q Consensus 295 ~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLAGSER~~ks~a~G 373 (648)
++++.+.|.+.+++..+++.|..+|++++|.+|++|||||+||+|+|.+.+. .+....++|+|||||||||+++++++|
T Consensus 481 ~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG 560 (670)
T KOG0239|consen 481 PLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTG 560 (670)
T ss_pred ccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCch
Confidence 9999999999999999999999999999999999999999999999999854 677889999999999999999999999
Q ss_pred hhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhccc
Q 047843 374 DRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453 (648)
Q Consensus 374 ~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I 453 (648)
+|++|+++||+||++||+||.||+++++||||||||||+||||||||++||+||++|||...++.||+++|+||.|++.+
T Consensus 561 ~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~ 640 (670)
T KOG0239|consen 561 ERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSV 640 (670)
T ss_pred hhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccchHHHHHHHHHHHHHHHHH
Q 047843 454 ELGAARVNKESNEVMQLKEQIESLKKAL 481 (648)
Q Consensus 454 ~~~~~~~~~~~~~i~~Lk~eI~~LK~~L 481 (648)
.+++++..........++..+..++...
T Consensus 641 ~lG~a~~~~~~~~~~~~~~~~~~~~~~~ 668 (670)
T KOG0239|consen 641 ELGSARKQVSTSDDVSLKRFGQLEKLST 668 (670)
T ss_pred ecccccccccccchhhhhhhhhhhhhhh
Confidence 9999998888887777777776666543
No 2
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-74 Score=636.98 Aligned_cols=299 Identities=44% Similarity=0.641 Sum_probs=265.1
Q ss_pred CCCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHc
Q 047843 188 RGNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMD 262 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLd 262 (648)
.-+|+|++|+||+.+.+.. .++.+....+.+.+.+|........+.|+||.||+++++|++||..+ .|+|++|++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 3579999999999886542 33445555666777666554455578899999999999999999985 999999999
Q ss_pred CcceEEEeecccCCCCceeeeecc--------------------------------------------------------
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------------- 286 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------------- 286 (648)
|||+||||||||||||||||+|..
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 999999999999999999994320
Q ss_pred -cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC----CCCeeeeeeEEEEcC
Q 047843 287 -ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT----SGSILRSCLHLVDLA 361 (648)
Q Consensus 287 -~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~----~~~~~~SkL~LVDLA 361 (648)
....|++|.|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|++... .....+|+|+|||||
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLa 243 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLA 243 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeecc
Confidence 014799999999999999999999999999999999999999999999999999998332 234568999999999
Q ss_pred CCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCC-CCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHH
Q 047843 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS-HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGET 440 (648)
Q Consensus 362 GSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~-hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eET 440 (648)
||||..++++.|+|++||.+||+||++||+||.||++++. ||||||||||+||||||||||+|+|||||+|+..+++||
T Consensus 244 gsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ET 323 (574)
T KOG4280|consen 244 GSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEET 323 (574)
T ss_pred chhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHH
Confidence 9999999999999999999999999999999999999776 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCccccccch-HHHHHHHHHHHHHHHHHHHHHH
Q 047843 441 VSTLKFAQRVSTVELGAARVNKES-NEVMQLKEQIESLKKALANKEA 486 (648)
Q Consensus 441 LsTLrFA~Rak~I~~~~~~~~~~~-~~i~~Lk~eI~~LK~~L~~~e~ 486 (648)
++||+||+|+|.|++.+..+.... ..+.+|+++|+.||.+|.....
T Consensus 324 lsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 324 LSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhccccC
Confidence 999999999999999887665554 7899999999999999987543
No 3
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5.1e-73 Score=649.89 Aligned_cols=299 Identities=39% Similarity=0.590 Sum_probs=260.9
Q ss_pred CCCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHc
Q 047843 188 RGNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMD 262 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLd 262 (648)
--||+|+|||||++..|.. .++.+.+....|.+... -+.+.-.++|+||+||||.+.|.+||+. |.|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~-~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQT-IASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecc-cccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 3599999999999988752 33444433333544433 2222236899999999999999999998 6999999999
Q ss_pred CcceEEEeecccCCCCceeeeec---------------------------------------------------------
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRS--------------------------------------------------------- 285 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~--------------------------------------------------------- 285 (648)
|||||||||||||+||||||.|.
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 99999999999999999999321
Q ss_pred ---------c---cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCC----
Q 047843 286 ---------C---ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGS---- 349 (648)
Q Consensus 286 ---------~---~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~---- 349 (648)
. ...+|+.|.|+.++.|.++.|++.+|..|...|.+++|.||.+|||||+||+|+|.-++.+..
T Consensus 207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geel 286 (1041)
T KOG0243|consen 207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEEL 286 (1041)
T ss_pred ccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhh
Confidence 0 135688999999999999999999999999999999999999999999999999987765433
Q ss_pred eeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEe
Q 047843 350 ILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAH 429 (648)
Q Consensus 350 ~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ 429 (648)
+..|+|+||||||||.++++|+.+.|.+||..||+||++||+||+||.++.+|||||+|||||||||||||..||+||+|
T Consensus 287 vK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIAT 366 (1041)
T KOG0243|consen 287 VKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIAT 366 (1041)
T ss_pred HhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCHHHHHHHHHHHHHhcccccCccccccch--HHHHHHHHHHHHHHHHHHHHHHh
Q 047843 430 VSPEVDFFGETVSTLKFAQRVSTVELGAARVNKES--NEVMQLKEQIESLKKALANKEAQ 487 (648)
Q Consensus 430 ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~~~~--~~i~~Lk~eI~~LK~~L~~~e~~ 487 (648)
|||+..+++||++||.||.|||+|+++|..+.+.. ..+.+|-.+|++||..|...+..
T Consensus 367 iSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred eCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999998776554 46778888999999888766543
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-71 Score=625.57 Aligned_cols=295 Identities=39% Similarity=0.576 Sum_probs=255.8
Q ss_pred CCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCC-------CChhhHHhch-HHH
Q 047843 189 GNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPT-------ATQDDVFKDT-QPL 256 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~-------asQeeVf~~v-~pl 256 (648)
.+|+|+|||||++..|.. +++.+.+ ++..+..|..... ...|+||++||.. ++|..||+++ .++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~g--n~ttii~~~~~k~--~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~m 79 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQG--NTTTIINPKGSKD--APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREM 79 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecC--CceeeecCCCccc--CCceecceeeecCCCCCCchhhHHHHHHHHhHHH
Confidence 479999999999988753 3455443 3445555543322 3459999999853 6899999996 899
Q ss_pred HHHHHcCcceEEEeecccCCCCceeeeeccc-------------------------------------------------
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA------------------------------------------------- 287 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTMi~~~~------------------------------------------------- 287 (648)
++.+|+|||+||||||||||||||||+|...
T Consensus 80 L~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 80 LDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 9999999999999999999999999944210
Q ss_pred -----------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC-----CCee
Q 047843 288 -----------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS-----GSIL 351 (648)
Q Consensus 288 -----------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~-----~~~~ 351 (648)
.-.|.||.+|+.+.|+|..|+.++|..|++.|++++|+||+.|||||+||+|.+.++... ....
T Consensus 160 ~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek 239 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEK 239 (1221)
T ss_pred CCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCccee
Confidence 134788999999999999999999999999999999999999999999999999987542 2567
Q ss_pred eeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC-------CCCCCcCCCccccccccccCCCcce
Q 047843 352 RSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK-------NSHIPYRNSKLTLLLQDSLGGRAKT 424 (648)
Q Consensus 352 ~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~-------~~hIPYRdSKLTrLLqdSLGGNSkT 424 (648)
+|+|+|||||||||++.+|+.|+|+|||.+|||||.+||.||.||++. +.+||||||-|||||+++|||||||
T Consensus 240 ~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKT 319 (1221)
T KOG0245|consen 240 VSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKT 319 (1221)
T ss_pred eeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchh
Confidence 899999999999999999999999999999999999999999999863 2489999999999999999999999
Q ss_pred eEEEecCCCcCCHHHHHHHHHHHHHhcccccCccccccc-hHHHHHHHHHHHHHHHHHHHHHHh
Q 047843 425 LMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKE-SNEVMQLKEQIESLKKALANKEAQ 487 (648)
Q Consensus 425 ~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~~~-~~~i~~Lk~eI~~LK~~L~~~e~~ 487 (648)
.||++|||++.||+|||+|||||.|||.|.++++.+... ...|++|++||.+||..|......
T Consensus 320 aMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~~~ 383 (1221)
T KOG0245|consen 320 AMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQGLG 383 (1221)
T ss_pred hhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999987755433 457999999999999998776544
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=7.6e-69 Score=620.82 Aligned_cols=291 Identities=42% Similarity=0.588 Sum_probs=253.8
Q ss_pred CCCeEEEEEeCCCCcccCCceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHcCcce
Q 047843 188 RGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYNV 266 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLdGyN~ 266 (648)
.++|+|||||||+...|....+.....++.+++. .+.|.||+||+++++|++||+.+ .|+|+++++|||+
T Consensus 97 ds~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNa 167 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNS 167 (1320)
T ss_pred CCCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcc
Confidence 5799999999999987654433333344444442 36899999999999999999995 8999999999999
Q ss_pred EEEeecccCCCCceeeeeccc-----------------------------------------------------------
Q 047843 267 CIFAYGQTGSGKTHTMIRSCA----------------------------------------------------------- 287 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~~~----------------------------------------------------------- 287 (648)
||||||||||||||||+|...
T Consensus 168 TIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLs 247 (1320)
T PLN03188 168 SVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLD 247 (1320)
T ss_pred eeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccc
Confidence 999999999999999976310
Q ss_pred -----------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-----CCCee
Q 047843 288 -----------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-----SGSIL 351 (648)
Q Consensus 288 -----------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-----~~~~~ 351 (648)
..+|++|.|++++.|.|.+|++++|..|..+|++++|.+|..|||||+||+|+|..... .....
T Consensus 248 p~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r 327 (1320)
T PLN03188 248 PSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFK 327 (1320)
T ss_pred cccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceE
Confidence 12467889999999999999999999999999999999999999999999999986432 12346
Q ss_pred eeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhh-----CCCCCCcCCCccccccccccCCCcceeE
Q 047843 352 RSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ-----KNSHIPYRNSKLTLLLQDSLGGRAKTLM 426 (648)
Q Consensus 352 ~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~-----~~~hIPYRdSKLTrLLqdSLGGNSkT~m 426 (648)
.|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+. +..|||||+||||+||||+|||||+|+|
T Consensus 328 ~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvM 407 (1320)
T PLN03188 328 TSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAM 407 (1320)
T ss_pred EEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEE
Confidence 79999999999999999999999999999999999999999999985 3579999999999999999999999999
Q ss_pred EEecCCCcCCHHHHHHHHHHHHHhcccccCccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 047843 427 FAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALANKEAQ 487 (648)
Q Consensus 427 I~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~~~~~~i~~Lk~eI~~LK~~L~~~e~~ 487 (648)
||||||+..+++||++||+||+||+.|++.+..+......+..|++.|..|+.+|...+..
T Consensus 408 Ia~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 408 VCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred EEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998776665666777778888888888776654
No 6
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.7e-67 Score=556.07 Aligned_cols=262 Identities=43% Similarity=0.710 Sum_probs=232.8
Q ss_pred CeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCcc---------ccCCCeEEEcceeeCCCCChhhHHhch-HH
Q 047843 190 NIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKA---------RKEGRKVFQFNHVFGPTATQDDVFKDT-QP 255 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~---------~~~~~k~F~FD~VF~~~asQeeVf~~v-~p 255 (648)
+|||||||||+.+.|. ..++.+. ++.+++.+|... .....+.|.||+||+++++|++||+.+ .|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVV--DDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEc--CCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 6999999999998763 2344443 234555565432 123367999999999999999999995 89
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeeeeccc------------------------------------------------
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA------------------------------------------------ 287 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~------------------------------------------------ 287 (648)
+|+++++|||+||||||||||||||||+|...
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~ 158 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSG 158 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCC
Confidence 99999999999999999999999999944210
Q ss_pred -------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC----CCCeeeeeeE
Q 047843 288 -------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT----SGSILRSCLH 356 (648)
Q Consensus 288 -------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~----~~~~~~SkL~ 356 (648)
..+|++|.|++++.|.|++|++++|+.|..+|++++|.+|..|||||+||+|+|.+.+. ......|+|+
T Consensus 159 ~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~ 238 (338)
T cd01370 159 PLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLS 238 (338)
T ss_pred CceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEE
Confidence 13577899999999999999999999999999999999999999999999999998765 3456789999
Q ss_pred EEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC---CCCCcCCCccccccccccCCCcceeEEEecCCC
Q 047843 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN---SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPE 433 (648)
Q Consensus 357 LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~---~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs 433 (648)
|||||||||..+++..|.+++|+.+||+||++|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhccc
Q 047843 434 VDFFGETVSTLKFAQRVSTV 453 (648)
Q Consensus 434 ~~~~eETLsTLrFA~Rak~I 453 (648)
..+++||++||+||+||++|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999986
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.3e-67 Score=554.42 Aligned_cols=258 Identities=46% Similarity=0.688 Sum_probs=226.7
Q ss_pred CCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHcC
Q 047843 189 GNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDG 263 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLdG 263 (648)
++|||||||||+...|.. .++... ++..+++... ..+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~-~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G 73 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKL-SSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSG 73 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEc-CCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 489999999999987742 223222 2333443321 146899999999999999999985 8999999999
Q ss_pred cceEEEeecccCCCCceeeeeccc--------------------------------------------------------
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSCA-------------------------------------------------------- 287 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~~-------------------------------------------------------- 287 (648)
||+||||||||||||||||+|...
T Consensus 74 ~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~ 153 (337)
T cd01373 74 YNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLD 153 (337)
T ss_pred CceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCC
Confidence 999999999999999999966320
Q ss_pred -----------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCC---Ceeee
Q 047843 288 -----------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSG---SILRS 353 (648)
Q Consensus 288 -----------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~---~~~~S 353 (648)
..+|++|+|++++.|.|++|++++|..|..+|++++|.+|.+|||||+||+|+|.+.+... ....|
T Consensus 154 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s 233 (337)
T cd01373 154 PTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTS 233 (337)
T ss_pred CCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEE
Confidence 0245678899999999999999999999999999999999999999999999998765432 34579
Q ss_pred eeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhh----CCCCCCcCCCccccccccccCCCcceeEEEe
Q 047843 354 CLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ----KNSHIPYRNSKLTLLLQDSLGGRAKTLMFAH 429 (648)
Q Consensus 354 kL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~----~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ 429 (648)
+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||||+|||||+|+||+|
T Consensus 234 ~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~ 313 (337)
T cd01373 234 RLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIAN 313 (337)
T ss_pred EEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 999999999999999999999999999999999999999999985 4689999999999999999999999999999
Q ss_pred cCCCcCCHHHHHHHHHHHHHhccc
Q 047843 430 VSPEVDFFGETVSTLKFAQRVSTV 453 (648)
Q Consensus 430 ISPs~~~~eETLsTLrFA~Rak~I 453 (648)
|||+..+++||++||+||+||+.|
T Consensus 314 vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 314 VSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred ECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999976
No 8
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.1e-66 Score=565.68 Aligned_cols=268 Identities=43% Similarity=0.598 Sum_probs=237.5
Q ss_pred CCCeEEEEEeCCCCcccCCc----eEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHc
Q 047843 188 RGNIRVYCRVRPSFRAETKN----VIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMD 262 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~~~----~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLd 262 (648)
.++|+|+||+||.+..|... +..+.+.+..+++... +. .+.|.||+||.|+++|++||+. +.|+|++||.
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~----~~-~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT----KE-TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc----cc-cccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 57999999999998776432 2333333445555421 11 3789999999999999999998 5999999999
Q ss_pred CcceEEEeecccCCCCceeeeecc--------------------------------------------------------
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------------- 286 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------------- 286 (648)
|||+||||||||||||||||.|..
T Consensus 81 GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsv 160 (607)
T KOG0240|consen 81 GYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSV 160 (607)
T ss_pred ccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCcee
Confidence 999999999999999999993211
Q ss_pred --cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcCCC
Q 047843 287 --ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGS 363 (648)
Q Consensus 287 --~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLAGS 363 (648)
....+++|+|++...|.+++++++.++.|..+|+++.|.||.+|||||+||+|+|.+.+. ......|+|+|||||||
T Consensus 161 heDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 161 HEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred ecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccc
Confidence 024577899999999999999999999999999999999999999999999999999876 44567899999999999
Q ss_pred cccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC-CCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHH
Q 047843 364 ERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK-NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVS 442 (648)
Q Consensus 364 ER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~-~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLs 442 (648)
|+++++|+.|.-+.|+++||+||+|||+||+||+++ ..|||||||||||||||||||||+|.+|+|+||+..+..||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 999999999999999999999999999999999997 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCcccc
Q 047843 443 TLKFAQRVSTVELGAARV 460 (648)
Q Consensus 443 TLrFA~Rak~I~~~~~~~ 460 (648)
||+|++||+.|++.+..+
T Consensus 321 Tl~fg~rak~ikN~v~~n 338 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVN 338 (607)
T ss_pred chhhccccccccchhhhh
Confidence 999999999999766544
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-67 Score=594.61 Aligned_cols=295 Identities=41% Similarity=0.578 Sum_probs=246.0
Q ss_pred CCeEEEEEeCCCCcccC---CceEEEEcCCCeEEEeC-CCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcC
Q 047843 189 GNIRVYCRVRPSFRAET---KNVIEFIGEDGSLVILD-PLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDG 263 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~---~~~i~~~~~d~~vvi~~-p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdG 263 (648)
.+|.|+|||||+.+.+. ..+......|..++... +..........|.||+||+++++|++||+. ++|+|++++.|
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G 85 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEG 85 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhcC
Confidence 48999999999988732 22223333333333221 211112225789999999999999999998 79999999999
Q ss_pred cceEEEeecccCCCCceeeeecc------------------------------------------------------cCC
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSC------------------------------------------------------ASE 289 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~------------------------------------------------------~~~ 289 (648)
||+||||||||||||||||.|.. ...
T Consensus 86 ~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~ 165 (675)
T KOG0242|consen 86 FNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSE 165 (675)
T ss_pred cccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcCC
Confidence 99999999999999999993321 124
Q ss_pred CCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCcccCCc
Q 047843 290 NGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKS 369 (648)
Q Consensus 290 ~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~~ks 369 (648)
+|+.|+|++++.|.|+++++++|..|+.+|+++.|.+|..|||||+||+|.|...........|+|+|||||||||+.++
T Consensus 166 ~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~~~s~L~lIDLAGSERas~T 245 (675)
T KOG0242|consen 166 GGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASSRVSKLNLIDLAGSERASRT 245 (675)
T ss_pred CCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccchhheehhhhhhhhhhhhhh
Confidence 58999999999999999999999999999999999999999999999999999876533226788999999999999999
Q ss_pred cchhhhhHHHHHhhhhHHHHHHHHHHHhhC--CCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHH
Q 047843 370 EVTGDRLKEAQYINKSLSCLGDVITALAQK--NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFA 447 (648)
Q Consensus 370 ~a~G~rlkEa~~INkSLsaLg~VI~ALs~~--~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA 447 (648)
++.|.|++||.+||+||.+||+||.+|+++ ..||||||||||||||++|||||+|+|||||+|+..+++||.+||+||
T Consensus 246 ~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fA 325 (675)
T KOG0242|consen 246 GNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFA 325 (675)
T ss_pred hccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999976 569999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCcccccc--chHHHHHHHHHHHHHHHHHHH
Q 047843 448 QRVSTVELGAARVNK--ESNEVMQLKEQIESLKKALAN 483 (648)
Q Consensus 448 ~Rak~I~~~~~~~~~--~~~~i~~Lk~eI~~LK~~L~~ 483 (648)
+||+.|++.+..+.. ....+..++.++..|+.++..
T Consensus 326 srak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 326 SRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 999999988765532 223344445666666666554
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.7e-65 Score=541.35 Aligned_cols=262 Identities=39% Similarity=0.582 Sum_probs=230.9
Q ss_pred CCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCcc--------ccCCCeEEEcceeeCCCCChhhHHhch-HH
Q 047843 189 GNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKA--------RKEGRKVFQFNHVFGPTATQDDVFKDT-QP 255 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~--------~~~~~k~F~FD~VF~~~asQeeVf~~v-~p 255 (648)
.+|+|||||||+...|. ..++.+. +++++++..|... .....+.|.||+||+++++|++||+.+ .|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVI-NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEc-CCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 37999999999998753 3445543 4556766665431 122467999999999999999999985 89
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeeeeccc------------------------------------------------
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA------------------------------------------------ 287 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~------------------------------------------------ 287 (648)
+|+++++|||+||||||||||||||||+|...
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~~~v~~S~~EIyne~v~DLL~~~~~~~~~~~ 159 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGGYSVFVSYVEIYNNYIYDLLEDSPSSTKKRQ 159 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHheeEEEEEEEEeCCEeEeCCCCccccccCCC
Confidence 99999999999999999999999999954210
Q ss_pred -------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC---------CCee
Q 047843 288 -------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS---------GSIL 351 (648)
Q Consensus 288 -------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---------~~~~ 351 (648)
..++++|.|++++.|.|++|++++|..|..+|.+++|.+|.+|||||+||+|+|.+.+.. +...
T Consensus 160 ~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~ 239 (345)
T cd01368 160 SLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQIT 239 (345)
T ss_pred ceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceE
Confidence 125678899999999999999999999999999999999999999999999999876532 3456
Q ss_pred eeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhh------CCCCCCcCCCccccccccccCCCccee
Q 047843 352 RSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ------KNSHIPYRNSKLTLLLQDSLGGRAKTL 425 (648)
Q Consensus 352 ~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~------~~~hIPYRdSKLTrLLqdSLGGNSkT~ 425 (648)
.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ +..|||||+||||+||+|+|||||+|+
T Consensus 240 ~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~ 319 (345)
T cd01368 240 VSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKAR 319 (345)
T ss_pred EEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEE
Confidence 89999999999999999999999999999999999999999999986 568999999999999999999999999
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHHhc
Q 047843 426 MFAHVSPEVDFFGETVSTLKFAQRVS 451 (648)
Q Consensus 426 mI~~ISPs~~~~eETLsTLrFA~Rak 451 (648)
||+||||+..+++||++||+||.+|+
T Consensus 320 ~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 320 MIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred EEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999999985
No 11
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.9e-64 Score=530.97 Aligned_cols=260 Identities=36% Similarity=0.538 Sum_probs=229.4
Q ss_pred CCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCcccc----CCCeEEEcceeeCCCCChhhHHhc-hHHHHHH
Q 047843 189 GNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARK----EGRKVFQFNHVFGPTATQDDVFKD-TQPLIRS 259 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~----~~~k~F~FD~VF~~~asQeeVf~~-v~plV~s 259 (648)
++|+|||||||+.+.|. ..++.+ .+++.+++.+|..... ...+.|.||+||+++++|++||+. +.|+|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSC-ESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEE-CCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 48999999999998874 233443 3335676665533211 125789999999999999999998 5999999
Q ss_pred HHcCcceEEEeecccCCCCceeeeecc----------------------------------------------------c
Q 047843 260 VMDGYNVCIFAYGQTGSGKTHTMIRSC----------------------------------------------------A 287 (648)
Q Consensus 260 vLdGyN~~IfAYGQTGSGKTyTMi~~~----------------------------------------------------~ 287 (648)
+++|||+||||||||||||||||+|.. .
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~ 159 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLED 159 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCccceeEEEc
Confidence 999999999999999999999995321 1
Q ss_pred CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCcccC
Q 047843 288 SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVD 367 (648)
Q Consensus 288 ~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~~ 367 (648)
..++++|.|++++.|.|++|++++|..|..+|.+++|.+|..|||||+||+|+|.+.+. ....|+|+|||||||||..
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--~~~~s~l~~vDLAGsE~~~ 237 (322)
T cd01367 160 GKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL--NKLLGKLSFIDLAGSERGA 237 (322)
T ss_pred CCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC--CeeEEEEEEeecCCccccc
Confidence 24567899999999999999999999999999999999999999999999999988765 4578999999999999998
Q ss_pred Ccc-chhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHH
Q 047843 368 KSE-VTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKF 446 (648)
Q Consensus 368 ks~-a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrF 446 (648)
..+ ..+++++|+.+||+||++|++||.+|++++.||||||||||+||+|+|||||+|+||+||||+..+++||++||+|
T Consensus 238 ~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~f 317 (322)
T cd01367 238 DTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRY 317 (322)
T ss_pred cccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHH
Confidence 765 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 047843 447 AQRVS 451 (648)
Q Consensus 447 A~Rak 451 (648)
|+|+|
T Consensus 318 a~r~k 322 (322)
T cd01367 318 ADRVK 322 (322)
T ss_pred HHhhC
Confidence 99986
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.4e-64 Score=533.18 Aligned_cols=271 Identities=41% Similarity=0.620 Sum_probs=239.3
Q ss_pred CCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcC
Q 047843 189 GNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDG 263 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdG 263 (648)
+||+|+|||||+...|.. .++...+++..+.+.++. ......+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~-~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGG-ADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCC-cccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 599999999999887642 345554444555554432 223346799999999999999999998 59999999999
Q ss_pred cceEEEeecccCCCCceeeeeccc--------------------------------------------------------
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSCA-------------------------------------------------------- 287 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~~-------------------------------------------------------- 287 (648)
||+||||||||||||||||+|...
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 160 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSES 160 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCcc
Confidence 999999999999999999955310
Q ss_pred -------------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC----CCe
Q 047843 288 -------------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS----GSI 350 (648)
Q Consensus 288 -------------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~----~~~ 350 (648)
..+|++|+|++++.|.|++|+++++..|..+|.+++|.+|..|||||+||+|+|.+.+.. ...
T Consensus 161 ~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~ 240 (352)
T cd01364 161 DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELV 240 (352)
T ss_pred ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccE
Confidence 135677899999999999999999999999999999999999999999999999876542 234
Q ss_pred eeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEec
Q 047843 351 LRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHV 430 (648)
Q Consensus 351 ~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~I 430 (648)
..|+|+||||||||+.++.++.+.+++|+..||+||++|++||.+|+.++.|||||+||||+||+|+|||||+|+||+||
T Consensus 241 ~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~v 320 (352)
T cd01364 241 KIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATI 320 (352)
T ss_pred EEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHHhcccccCcccc
Q 047843 431 SPEVDFFGETVSTLKFAQRVSTVELGAARV 460 (648)
Q Consensus 431 SPs~~~~eETLsTLrFA~Rak~I~~~~~~~ 460 (648)
||+..+++||++||+||+|+++|++.|..+
T Consensus 321 sp~~~~~~eTl~TL~~a~~~~~i~n~P~~n 350 (352)
T cd01364 321 SPASINLEETLSTLEYAHRAKNIKNKPEVN 350 (352)
T ss_pred CCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999988654
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=8e-64 Score=525.39 Aligned_cols=259 Identities=40% Similarity=0.617 Sum_probs=231.2
Q ss_pred CeEEEEEeCCCCcccCC--ceEEEEcCC----CeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHc
Q 047843 190 NIRVYCRVRPSFRAETK--NVIEFIGED----GSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMD 262 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~~--~~i~~~~~d----~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLd 262 (648)
||+|+|||||+.+.|.. .++...+.+ .++.+.+|... ...+.|.||+||+++++|++||+. +.|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNR--GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCC--CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 69999999999877643 344444332 36666666432 236789999999999999999998 6999999999
Q ss_pred CcceEEEeecccCCCCceeeeeccc-----------------------------------------------------CC
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSCA-----------------------------------------------------SE 289 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~~-----------------------------------------------------~~ 289 (648)
|||+||||||||||||||||+|... ..
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~ 158 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKD 158 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCC
Confidence 9999999999999999999943210 14
Q ss_pred CCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCcccCCc
Q 047843 290 NGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKS 369 (648)
Q Consensus 290 ~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~~ks 369 (648)
++++++|++++.|.|++|+++++..|..+|.+++|.+|..|||||+||+|+|.+.+. .....|+|+|||||||||..++
T Consensus 159 ~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-~~~~~s~l~~VDLAGsE~~~~~ 237 (319)
T cd01376 159 GNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS-NIQLEGKLNLIDLAGSEDNRRT 237 (319)
T ss_pred CCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC-CceEEEEEEEEECCCCCccccc
Confidence 567889999999999999999999999999999999999999999999999987754 3367899999999999999999
Q ss_pred cchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHH
Q 047843 370 EVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQR 449 (648)
Q Consensus 370 ~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~R 449 (648)
+..|.+++|+..||+||++|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||...+++||++||+||+|
T Consensus 238 ~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r 317 (319)
T cd01376 238 GNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASR 317 (319)
T ss_pred CCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 047843 450 VS 451 (648)
Q Consensus 450 ak 451 (648)
+|
T Consensus 318 ~~ 319 (319)
T cd01376 318 SK 319 (319)
T ss_pred hC
Confidence 86
No 14
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.3e-63 Score=530.89 Aligned_cols=268 Identities=42% Similarity=0.615 Sum_probs=236.2
Q ss_pred CCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCcc--ccCCCeEEEcceeeCCC-------CChhhHHhch-H
Q 047843 189 GNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKA--RKEGRKVFQFNHVFGPT-------ATQDDVFKDT-Q 254 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~--~~~~~k~F~FD~VF~~~-------asQeeVf~~v-~ 254 (648)
++|+|||||||+...|.. .++.+ .+..+++.+|... .....+.|.||+||++. ++|++||+.+ .
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~--~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~ 78 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQM--PGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGR 78 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEE--CCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHH
Confidence 689999999999987642 23333 3367777776531 12236789999999999 9999999985 8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceeeeeccc-----------------------------------------------
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA----------------------------------------------- 287 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~----------------------------------------------- 287 (648)
|+|+++++|||+||||||||||||||||+|...
T Consensus 79 p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~ 158 (356)
T cd01365 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPK 158 (356)
T ss_pred HHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCC
Confidence 999999999999999999999999999943210
Q ss_pred ------------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-----CCCe
Q 047843 288 ------------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-----SGSI 350 (648)
Q Consensus 288 ------------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-----~~~~ 350 (648)
...|++|+|++++.|.|++|+++++..|.++|.+++|.+|..|||||+||+|+|.+.+. ....
T Consensus 159 ~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~ 238 (356)
T cd01365 159 KKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTE 238 (356)
T ss_pred ccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCce
Confidence 12466789999999999999999999999999999999999999999999999987653 2346
Q ss_pred eeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC--------CCCCCcCCCccccccccccCCCc
Q 047843 351 LRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK--------NSHIPYRNSKLTLLLQDSLGGRA 422 (648)
Q Consensus 351 ~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~--------~~hIPYRdSKLTrLLqdSLGGNS 422 (648)
..|+|+|||||||||.++++..|.+++|+..||+||++|++||.+|+.. +.|||||+||||+||+|+|||||
T Consensus 239 ~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s 318 (356)
T cd01365 239 KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS 318 (356)
T ss_pred EEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc
Confidence 7899999999999999999999999999999999999999999999864 47999999999999999999999
Q ss_pred ceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCcc
Q 047843 423 KTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAA 458 (648)
Q Consensus 423 kT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~ 458 (648)
+|+||+||||...+++||++||+||+|+++|++.+.
T Consensus 319 ~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~ 354 (356)
T cd01365 319 KTAMIATISPADINYEETLSTLRYADRAKKIVNVAV 354 (356)
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccc
Confidence 999999999999999999999999999999998775
No 15
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.1e-63 Score=527.06 Aligned_cols=265 Identities=46% Similarity=0.718 Sum_probs=236.9
Q ss_pred CCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcC
Q 047843 189 GNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDG 263 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdG 263 (648)
.||+|+|||||+.+.|.. .++....+++.+.+.+|........+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 389999999999877642 3455556667777777654333457899999999999999999998 59999999999
Q ss_pred cceEEEeecccCCCCceeeeeccc--------------------------------------------------------
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSCA-------------------------------------------------------- 287 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~~-------------------------------------------------------- 287 (648)
||+||||||||||||||||+|...
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999944211
Q ss_pred --CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC----CCCeeeeeeEEEEcC
Q 047843 288 --SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT----SGSILRSCLHLVDLA 361 (648)
Q Consensus 288 --~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~----~~~~~~SkL~LVDLA 361 (648)
..+|++|.|++++.|.|++|+..++..|..+|.+++|.+|..|||||+||+|+|.+.+. .+....|+|+|||||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLA 240 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLA 240 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECC
Confidence 13467899999999999999999999999999999999999999999999999988754 334567999999999
Q ss_pred CCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCC-CCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHH
Q 047843 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS-HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGET 440 (648)
Q Consensus 362 GSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~-hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eET 440 (648)
||||.++++..|.+++|+..||+||.+|++||.+|+++.. |||||+||||+||+|+|||||+|+||+||+|...+++||
T Consensus 241 GsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eT 320 (333)
T cd01371 241 GSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDET 320 (333)
T ss_pred CCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHH
Confidence 9999999999999999999999999999999999998776 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 047843 441 VSTLKFAQRVSTV 453 (648)
Q Consensus 441 LsTLrFA~Rak~I 453 (648)
++||+||+|+|.|
T Consensus 321 l~TL~fa~r~r~I 333 (333)
T cd01371 321 LSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999976
No 16
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=9.4e-63 Score=517.95 Aligned_cols=265 Identities=55% Similarity=0.850 Sum_probs=239.4
Q ss_pred CCCeEEEEEeCCCCccc---CCceEEEEcCC-CeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHHHHHcC
Q 047843 188 RGNIRVYCRVRPSFRAE---TKNVIEFIGED-GSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDG 263 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E---~~~~i~~~~~d-~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~svLdG 263 (648)
+|+|||+|||||+...| ...++.+.+.+ ..+++.++ ....+.|.||+||+++++|++||+.+.|+|+++++|
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G 76 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDG 76 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCC
Confidence 69999999999999887 34566666655 44544432 123678999999999999999999999999999999
Q ss_pred cceEEEeecccCCCCceeeeecc---------------------------------------------------------
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSC--------------------------------------------------------- 286 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~--------------------------------------------------------- 286 (648)
+|+||||||+|||||||||+|..
T Consensus 77 ~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i 156 (329)
T cd01366 77 YNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEI 156 (329)
T ss_pred CceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEE
Confidence 99999999999999999994420
Q ss_pred --cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcCCC
Q 047843 287 --ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGS 363 (648)
Q Consensus 287 --~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLAGS 363 (648)
...+++++.|++++.|.|++|+.+++..|..+|.+++|.+|..|||||+||+|+|.+.+. .+....|+|+|||||||
T Consensus 157 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGs 236 (329)
T cd01366 157 KHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGS 236 (329)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCC
Confidence 012567789999999999999999999999999999999999999999999999998765 45677899999999999
Q ss_pred cccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHH
Q 047843 364 ERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVST 443 (648)
Q Consensus 364 ER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsT 443 (648)
|+..+.++.|.+++|+..||+||.+|++||.+|+++..|||||+||||+||+|+|||+++|+||+||||...+++||++|
T Consensus 237 E~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 237 ERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred cccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccC
Q 047843 444 LKFAQRVSTVELG 456 (648)
Q Consensus 444 LrFA~Rak~I~~~ 456 (648)
|+||+|+++|++|
T Consensus 317 L~~a~~~~~i~~~ 329 (329)
T cd01366 317 LRFASRVRSVELG 329 (329)
T ss_pred HHHHHHhhcccCC
Confidence 9999999999864
No 17
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=8.7e-63 Score=517.76 Aligned_cols=259 Identities=46% Similarity=0.696 Sum_probs=232.2
Q ss_pred CCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHcC
Q 047843 189 GNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDG 263 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLdG 263 (648)
.+|+|+|||||+...|. ..++.+. ++.++++.++ ...+.|.||+||+++++|++||+.+ .|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~-~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G 75 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFP-GEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNG 75 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEc-CCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence 48999999999998762 2344443 3345655543 2367999999999999999999985 9999999999
Q ss_pred cceEEEeecccCCCCceeeeeccc--------------------------------------------------------
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSCA-------------------------------------------------------- 287 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~~-------------------------------------------------------- 287 (648)
||+||||||||||||||||+|...
T Consensus 76 ~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~ 155 (325)
T cd01369 76 YNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVH 155 (325)
T ss_pred ccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEE
Confidence 999999999999999999954321
Q ss_pred --CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcCCCc
Q 047843 288 --SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSE 364 (648)
Q Consensus 288 --~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLAGSE 364 (648)
..+|++++|++++.|.|.+|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+. .+....|+|+||||||||
T Consensus 156 ~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE 235 (325)
T cd01369 156 EDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSE 235 (325)
T ss_pred EcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCC
Confidence 13567789999999999999999999999999999999999999999999999998765 345678999999999999
Q ss_pred ccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC-CCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHH
Q 047843 365 RVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN-SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVST 443 (648)
Q Consensus 365 R~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~-~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsT 443 (648)
+..++++.|.+++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||+|+|+||+||||+..+++||++|
T Consensus 236 ~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~T 315 (325)
T cd01369 236 KVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLST 315 (325)
T ss_pred cccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHH
Confidence 999999999999999999999999999999999887 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccc
Q 047843 444 LKFAQRVSTV 453 (648)
Q Consensus 444 LrFA~Rak~I 453 (648)
|+||+|+++|
T Consensus 316 L~~a~r~~~i 325 (325)
T cd01369 316 LRFGARAKTI 325 (325)
T ss_pred HHHHHHhhcC
Confidence 9999999976
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.5e-62 Score=515.60 Aligned_cols=258 Identities=42% Similarity=0.664 Sum_probs=229.6
Q ss_pred CeEEEEEeCCCCcccC--CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcCcce
Q 047843 190 NIRVYCRVRPSFRAET--KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDGYNV 266 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~--~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdGyN~ 266 (648)
+|+|+|||||+...|. ..++....+++.+++.++ ...+.|.||+||+++++|++||+. +.|+|+++++|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~ 75 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNG 75 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCce
Confidence 6999999999998764 222333334445555543 236799999999999999999998 59999999999999
Q ss_pred EEEeecccCCCCceeeeecc------------------------------------------------------cCCCCc
Q 047843 267 CIFAYGQTGSGKTHTMIRSC------------------------------------------------------ASENGL 292 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~~------------------------------------------------------~~~~g~ 292 (648)
||||||||||||||||+|.. ....|+
T Consensus 76 ~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~ 155 (321)
T cd01374 76 TIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGV 155 (321)
T ss_pred eEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCE
Confidence 99999999999999994321 013478
Q ss_pred ccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC----CCeeeeeeEEEEcCCCcccCC
Q 047843 293 NLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS----GSILRSCLHLVDLAGSERVDK 368 (648)
Q Consensus 293 ~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~----~~~~~SkL~LVDLAGSER~~k 368 (648)
+++|++++.|.|++|++++|..|..+|.+++|.+|.+|||||+||+|+|.+.... +....|+|+|||||||||..+
T Consensus 156 ~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~ 235 (321)
T cd01374 156 VVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQ 235 (321)
T ss_pred EeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCcccc
Confidence 8999999999999999999999999999999999999999999999999987642 456789999999999999999
Q ss_pred ccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC--CCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHH
Q 047843 369 SEVTGDRLKEAQYINKSLSCLGDVITALAQKN--SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKF 446 (648)
Q Consensus 369 s~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~--~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrF 446 (648)
.+ .+.+++|+.+||+||.+|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||...+++||++||+|
T Consensus 236 ~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~ 314 (321)
T cd01374 236 TG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKF 314 (321)
T ss_pred CC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHH
Confidence 98 89999999999999999999999999985 9999999999999999999999999999999999999999999999
Q ss_pred HHHhccc
Q 047843 447 AQRVSTV 453 (648)
Q Consensus 447 A~Rak~I 453 (648)
|+|+++|
T Consensus 315 a~r~~~i 321 (321)
T cd01374 315 ASRAKKV 321 (321)
T ss_pred HHHHhcC
Confidence 9999876
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.8e-62 Score=516.70 Aligned_cols=257 Identities=44% Similarity=0.683 Sum_probs=229.6
Q ss_pred CeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcCc
Q 047843 190 NIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDGY 264 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdGy 264 (648)
+|||+|||||+...|.. .++.+...+..+++.+ .+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999977743 2444555444444422 5689999999999999999998 589999999999
Q ss_pred ceEEEeecccCCCCceeeeeccc---------------------------------------------------------
Q 047843 265 NVCIFAYGQTGSGKTHTMIRSCA--------------------------------------------------------- 287 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTMi~~~~--------------------------------------------------------- 287 (648)
|+||||||||||||||||+|...
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999999965310
Q ss_pred -------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC-----------CC
Q 047843 288 -------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS-----------GS 349 (648)
Q Consensus 288 -------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~-----------~~ 349 (648)
..+|+.|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.... ..
T Consensus 154 ~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd01372 154 PIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNS 233 (341)
T ss_pred CceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCc
Confidence 124567889999999999999999999999999999999999999999999999887653 34
Q ss_pred eeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC---CCCCcCCCccccccccccCCCcceeE
Q 047843 350 ILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN---SHIPYRNSKLTLLLQDSLGGRAKTLM 426 (648)
Q Consensus 350 ~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~---~hIPYRdSKLTrLLqdSLGGNSkT~m 426 (648)
...|+|+||||||||+.+++++.|++++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+|
T Consensus 234 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~ 313 (341)
T cd01372 234 TLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLM 313 (341)
T ss_pred eeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 578999999999999999999999999999999999999999999999876 79999999999999999999999999
Q ss_pred EEecCCCcCCHHHHHHHHHHHHHhcccc
Q 047843 427 FAHVSPEVDFFGETVSTLKFAQRVSTVE 454 (648)
Q Consensus 427 I~~ISPs~~~~eETLsTLrFA~Rak~I~ 454 (648)
|+||||...+++||++||+||+|+++|+
T Consensus 314 I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 314 IACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999985
No 20
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.5e-63 Score=549.73 Aligned_cols=298 Identities=40% Similarity=0.589 Sum_probs=253.8
Q ss_pred CCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCcc---ccCCCeEEEcceeeCCC-------CChhhHHhch-
Q 047843 189 GNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKA---RKEGRKVFQFNHVFGPT-------ATQDDVFKDT- 253 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~---~~~~~k~F~FD~VF~~~-------asQeeVf~~v- 253 (648)
.+|||+|||||++..|.. .++++..... ++...|++. ...+.++|.||++|++. +.|+.||+.+
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~-vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQT-VLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCce-eecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 589999999999988753 4455443322 222222221 12458899999999874 6899999997
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceeeeeccc----------------------------------------------
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA---------------------------------------------- 287 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~---------------------------------------------- 287 (648)
..+|+++|+|||+||||||||||||||||+|...
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 7899999999999999999999999999944211
Q ss_pred ------------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC-----CCe
Q 047843 288 ------------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS-----GSI 350 (648)
Q Consensus 288 ------------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~-----~~~ 350 (648)
+--|.+|.||+...|.|.+|+-.+|..|+++|++++|+||..|||||+||.|.|.+.-.+ ...
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 123778999999999999999999999999999999999999999999999999875321 123
Q ss_pred eeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC------CCCCCcCCCccccccccccCCCcce
Q 047843 351 LRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK------NSHIPYRNSKLTLLLQDSLGGRAKT 424 (648)
Q Consensus 351 ~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~------~~hIPYRdSKLTrLLqdSLGGNSkT 424 (648)
..|+|.|||||||||+.++++.|.|++|+.+||+||++||.||.||+.+ +++||||||.||+||||+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 5799999999999999999999999999999999999999999999852 4589999999999999999999999
Q ss_pred eEEEecCCCcCCHHHHHHHHHHHHHhcccccCccccccc-hHHHHHHHHHHHHHHHHHHHHHHh
Q 047843 425 LMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNKE-SNEVMQLKEQIESLKKALANKEAQ 487 (648)
Q Consensus 425 ~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~~~-~~~i~~Lk~eI~~LK~~L~~~e~~ 487 (648)
+||+||||+.++|+||++|||||.|||.|.+.+..+.+. ...+++|++|++.|+.+|...++.
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~ 386 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAM 386 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999999999887655444 357889999999999999886543
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=8.5e-62 Score=513.24 Aligned_cols=260 Identities=46% Similarity=0.696 Sum_probs=228.5
Q ss_pred CeEEEEEeCCCCcccCCceEEEEcCCCeEEEeCCCcc------ccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHc
Q 047843 190 NIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKA------RKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMD 262 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~~~~i~~~~~d~~vvi~~p~~~------~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLd 262 (648)
.|||+|||||+...+... +.+..++..+.+..|... .....+.|.||+||++ ++|++||+.+ .|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~ 78 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSS-IKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALD 78 (334)
T ss_pred CeEEEEECCCCCCCCCcc-EEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhC
Confidence 489999999999865543 444445555555554331 1123568999999999 9999999995 899999999
Q ss_pred CcceEEEeecccCCCCceeeeeccc-------------------------------------------------------
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSCA------------------------------------------------------- 287 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~~------------------------------------------------------- 287 (648)
|||+||||||||||||||||+|...
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~ 158 (334)
T cd01375 79 GYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESL 158 (334)
T ss_pred CCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccC
Confidence 9999999999999999999954210
Q ss_pred --------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEee---CCCCeeeeeeE
Q 047843 288 --------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKD---TSGSILRSCLH 356 (648)
Q Consensus 288 --------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~---~~~~~~~SkL~ 356 (648)
..++++|.|++++.|.+++|++.++..|..+|.+++|.+|..|||||+||+|+|.+.. .......|+|+
T Consensus 159 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~ 238 (334)
T cd01375 159 PAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLN 238 (334)
T ss_pred CceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEE
Confidence 1345678999999999999999999999999999999999999999999999999863 23456789999
Q ss_pred EEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC-CCCCcCCCccccccccccCCCcceeEEEecCCCcC
Q 047843 357 LVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN-SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVD 435 (648)
Q Consensus 357 LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~-~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~ 435 (648)
|||||||||..++++.+..++|+..||+||++|++||.+|++++ .|||||+||||+||+|+|||||+|+||+||||+..
T Consensus 239 ~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~ 318 (334)
T cd01375 239 LVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPS 318 (334)
T ss_pred EEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchh
Confidence 99999999999999999999999999999999999999999988 99999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 047843 436 FFGETVSTLKFAQRVS 451 (648)
Q Consensus 436 ~~eETLsTLrFA~Rak 451 (648)
+++||++||+||+|++
T Consensus 319 ~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 319 NLDETLSTLRFAQRVA 334 (334)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 9999999999999985
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.4e-58 Score=486.73 Aligned_cols=268 Identities=53% Similarity=0.753 Sum_probs=238.4
Q ss_pred CeEEEEEeCCCCcccC----CceEEEEcCCC-eEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHcC
Q 047843 190 NIRVYCRVRPSFRAET----KNVIEFIGEDG-SLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDG 263 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~----~~~i~~~~~d~-~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLdG 263 (648)
+|+|+|||||+...|. ..++.+.+.++ .+++.++.. ....+.|.||+||+++++|++||+.+ .|+|+.+++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKN--RKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCC--CCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 6999999999998764 34566655554 455555432 23468999999999999999999985 8999999999
Q ss_pred cceEEEeecccCCCCceeeeecc-------------------------------------------------------cC
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------------AS 288 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------------~~ 288 (648)
+|+||||||+|||||||||+|.. ..
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~ 158 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDK 158 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECC
Confidence 99999999999999999994321 01
Q ss_pred CCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEe---eCCCCeeeeeeEEEEcCCCcc
Q 047843 289 ENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGK---DTSGSILRSCLHLVDLAGSER 365 (648)
Q Consensus 289 ~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~---~~~~~~~~SkL~LVDLAGSER 365 (648)
.+|+++.|++++.|.|++|+++++..|..+|.+++|.+|..|||||+||+|+|.+. ...+....|+|+||||||+|+
T Consensus 159 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~ 238 (335)
T smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSER 238 (335)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCc
Confidence 34678899999999999999999999999999999999999999999999999976 234557789999999999999
Q ss_pred cCCccchhhhhHHHHHhhhhHHHHHHHHHHHhh--CCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHH
Q 047843 366 VDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ--KNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVST 443 (648)
Q Consensus 366 ~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~--~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsT 443 (648)
..+.++.|.+++|+..||+||.+|++||.+|++ +..|||||+|+||+||+++|||+++|+||+||||...+++||++|
T Consensus 239 ~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~t 318 (335)
T smart00129 239 ASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLST 318 (335)
T ss_pred cccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHH
Confidence 999999999999999999999999999999998 577999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCccc
Q 047843 444 LKFAQRVSTVELGAAR 459 (648)
Q Consensus 444 LrFA~Rak~I~~~~~~ 459 (648)
|+||+++++|+++|.+
T Consensus 319 L~~a~~~~~i~~~p~~ 334 (335)
T smart00129 319 LRFASRAKEIKNKAIV 334 (335)
T ss_pred HHHHHHHhhcccCCCc
Confidence 9999999999998864
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=2.2e-58 Score=483.02 Aligned_cols=261 Identities=52% Similarity=0.779 Sum_probs=233.6
Q ss_pred CeEEEEEeCCCCccc---CCceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHcCcc
Q 047843 190 NIRVYCRVRPSFRAE---TKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMDGYN 265 (648)
Q Consensus 190 nIRV~vRVRP~~~~E---~~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLdGyN 265 (648)
+|+|||||||+...| ...++.+. +++.+++.+|........+.|.||+||+++++|++||+.+ .|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVD-DNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEEC-CCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 699999999998865 34455543 3367777776543334468999999999999999999985 899999999999
Q ss_pred eEEEeecccCCCCceeeeeccc---------------------------------------------C------------
Q 047843 266 VCIFAYGQTGSGKTHTMIRSCA---------------------------------------------S------------ 288 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi~~~~---------------------------------------------~------------ 288 (648)
+||||||||||||||||+|... .
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 9999999999999999955200 0
Q ss_pred -CCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCC---eeeeeeEEEEcCCCc
Q 047843 289 -ENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGS---ILRSCLHLVDLAGSE 364 (648)
Q Consensus 289 -~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~---~~~SkL~LVDLAGSE 364 (648)
.+|+.+.|++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|+|.+.+.... ...|+|+||||||+|
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse 239 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSE 239 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCC
Confidence 1467789999999999999999999999999999999999999999999999998876443 678999999999999
Q ss_pred ccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC--CCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHH
Q 047843 365 RVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN--SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVS 442 (648)
Q Consensus 365 R~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~--~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLs 442 (648)
+..+.+..+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|||+++|+||+||||...+++||++
T Consensus 240 ~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~ 319 (328)
T cd00106 240 RAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLS 319 (328)
T ss_pred cccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 047843 443 TLKFAQRVS 451 (648)
Q Consensus 443 TLrFA~Rak 451 (648)
||+||+|++
T Consensus 320 tL~~a~r~~ 328 (328)
T cd00106 320 TLRFASRAK 328 (328)
T ss_pred HHHHHHhcC
Confidence 999999985
No 24
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-58 Score=501.50 Aligned_cols=265 Identities=34% Similarity=0.497 Sum_probs=229.3
Q ss_pred CeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCcc----ccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHH
Q 047843 190 NIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKA----RKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSV 260 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~----~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~sv 260 (648)
.|.|+||-||++..|.. .+|.+. .++.+++..|... ..-..+.|.||++||+.+++++||.. ++|||..+
T Consensus 209 rI~VCVRKRPLnkkE~~~keiDvisvp-s~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~I 287 (676)
T KOG0246|consen 209 RICVCVRKRPLNKKELTKKEIDVISVP-SKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKTI 287 (676)
T ss_pred eEEEEeecCCCCchhccccccceEecc-ccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHHH
Confidence 69999999999988853 334443 4556666665331 11236789999999999999999998 59999999
Q ss_pred HcCcceEEEeecccCCCCceeeeecc------------------------------------------------------
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTMIRSC------------------------------------------------------ 286 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTMi~~~------------------------------------------------------ 286 (648)
|+|.-+|+||||||||||||||-|..
T Consensus 288 F~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~k 367 (676)
T KOG0246|consen 288 FEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLNDK 367 (676)
T ss_pred HhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhccc
Confidence 99999999999999999999991110
Q ss_pred -------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEE
Q 047843 287 -------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVD 359 (648)
Q Consensus 287 -------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVD 359 (648)
.....+.|.|+++..|.+.+|++++|+.|+..|+++.|..|..|||||+||+|.+... .+...+|++.|||
T Consensus 368 ~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~--~~~k~hGKfSlID 445 (676)
T KOG0246|consen 368 KKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH--GEFKLHGKFSLID 445 (676)
T ss_pred cceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC--CcceeEeEEEEEE
Confidence 0123467889999999999999999999999999999999999999999999999643 2346789999999
Q ss_pred cCCCcccC-CccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCC-CcceeEEEecCCCcCCH
Q 047843 360 LAGSERVD-KSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGG-RAKTLMFAHVSPEVDFF 437 (648)
Q Consensus 360 LAGSER~~-ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGG-NSkT~mI~~ISPs~~~~ 437 (648)
|||+||.. .+.+..++..||+.|||||+||..||.||.+++.|+|||.||||.+|+|||-| ||+|+||+||||...++
T Consensus 446 LAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~Sc 525 (676)
T KOG0246|consen 446 LAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSC 525 (676)
T ss_pred ccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchh
Confidence 99999964 45567788899999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCc
Q 047843 438 GETVSTLKFAQRVSTVELGA 457 (648)
Q Consensus 438 eETLsTLrFA~Rak~I~~~~ 457 (648)
+.||+|||||.|+|......
T Consensus 526 EhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 526 EHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred hhhHHHHHHHHHHHhhcCCC
Confidence 99999999999999886543
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.9e-57 Score=477.25 Aligned_cols=258 Identities=49% Similarity=0.722 Sum_probs=218.4
Q ss_pred EeCCCCcccCCc----eEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcCcceEEEe
Q 047843 196 RVRPSFRAETKN----VIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDGYNVCIFA 270 (648)
Q Consensus 196 RVRP~~~~E~~~----~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdGyN~~IfA 270 (648)
||||+...|... .+......................+.|.||+||+++++|++||+. +.|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 899999877532 122221111111111122223346799999999999999999999 599999999999999999
Q ss_pred ecccCCCCceeeeec--cc----------------------------------------------C--------------
Q 047843 271 YGQTGSGKTHTMIRS--CA----------------------------------------------S-------------- 288 (648)
Q Consensus 271 YGQTGSGKTyTMi~~--~~----------------------------------------------~-------------- 288 (648)
||||||||||||+|. .. .
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999664 00 0
Q ss_pred -CCC-cccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCC-----eeeeeeEEEEcC
Q 047843 289 -ENG-LNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGS-----ILRSCLHLVDLA 361 (648)
Q Consensus 289 -~~g-~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~-----~~~SkL~LVDLA 361 (648)
..| +++.|++++.|.|.+|++.+|..|..+|.++.|.+|..|||||+||+|+|.+.+.... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 113 6789999999999999999999999999999999999999999999999999876432 478999999999
Q ss_pred CCcccCCccc-hhhhhHHHHHhhhhHHHHHHHHHHHhhC--CCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHH
Q 047843 362 GSERVDKSEV-TGDRLKEAQYINKSLSCLGDVITALAQK--NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFG 438 (648)
Q Consensus 362 GSER~~ks~a-~G~rlkEa~~INkSLsaLg~VI~ALs~~--~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~e 438 (648)
|+|+..+.++ .+.+++|+..||+||.+|++||.+|+++ ..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999998886 4888999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 047843 439 ETVSTLKFAQRVSTV 453 (648)
Q Consensus 439 ETLsTLrFA~Rak~I 453 (648)
||++||+||+++++|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999986
No 26
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.9e-56 Score=504.59 Aligned_cols=281 Identities=40% Similarity=0.580 Sum_probs=244.3
Q ss_pred eCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcCcceEEEee
Q 047843 197 VRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDGYNVCIFAY 271 (648)
Q Consensus 197 VRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdGyN~~IfAY 271 (648)
|||+...|.. .++.+...+..+++. +...|+||+||+...+|.++|+. |.|+++.+++|||+|++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig--------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG--------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec--------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 5887765532 233333334444442 36789999999999999999998 6999999999999999999
Q ss_pred cccCCCCceeeeec-----------------------------------------------c------------cCCCCc
Q 047843 272 GQTGSGKTHTMIRS-----------------------------------------------C------------ASENGL 292 (648)
Q Consensus 272 GQTGSGKTyTMi~~-----------------------------------------------~------------~~~~g~ 292 (648)
|||||||||||... + ...+++
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e~~g~i 152 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLREPKGEI 152 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccccCCce
Confidence 99999999999211 0 012447
Q ss_pred ccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC--CCCeeeeeeEEEEcCCCcccCCcc
Q 047843 293 NLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT--SGSILRSCLHLVDLAGSERVDKSE 370 (648)
Q Consensus 293 ~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~--~~~~~~SkL~LVDLAGSER~~ks~ 370 (648)
.+.|+++..|.+..+++..|..|...|++++|+||..|||||+||++.+++... .....+++|+|||||||||.++++
T Consensus 153 t~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~ 232 (913)
T KOG0244|consen 153 TIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTK 232 (913)
T ss_pred EEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccc
Confidence 788999999999999999999999999999999999999999999999987443 334567999999999999999999
Q ss_pred chhhhhHHHHHhhhhHHHHHHHHHHHhhCCC--CCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHH
Q 047843 371 VTGDRLKEAQYINKSLSCLGDVITALAQKNS--HIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQ 448 (648)
Q Consensus 371 a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~--hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~ 448 (648)
+.|+|++|+.+||.+|++||+||+||..... |||||+|||||||||+||||+.|+||+||||+..+.+||++||+||.
T Consensus 233 a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~ 312 (913)
T KOG0244|consen 233 AEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYAD 312 (913)
T ss_pred cchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhh
Confidence 9999999999999999999999999987554 99999999999999999999999999999999999999999999999
Q ss_pred HhcccccCccccc-cchHHHHHHHHHHHHHHHHHHHHH
Q 047843 449 RVSTVELGAARVN-KESNEVMQLKEQIESLKKALANKE 485 (648)
Q Consensus 449 Rak~I~~~~~~~~-~~~~~i~~Lk~eI~~LK~~L~~~e 485 (648)
|++.|++.++.++ ....++..|+.||+.|+.+|....
T Consensus 313 Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 313 RAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998776 445678899999999999987765
No 27
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-52 Score=464.64 Aligned_cols=270 Identities=38% Similarity=0.607 Sum_probs=235.5
Q ss_pred hcCCCeEEEEEeCCCC-cccCCceEEEEcCCCeEEEeCCCcc-------ccCCCeEEEcceeeCCCCChhhHHhc-hHHH
Q 047843 186 DLRGNIRVYCRVRPSF-RAETKNVIEFIGEDGSLVILDPLKA-------RKEGRKVFQFNHVFGPTATQDDVFKD-TQPL 256 (648)
Q Consensus 186 elkGnIRV~vRVRP~~-~~E~~~~i~~~~~d~~vvi~~p~~~-------~~~~~k~F~FD~VF~~~asQeeVf~~-v~pl 256 (648)
+.+..|.||||+||+. ..+..+++.+++ +.++++..|... .....+.|.|-+||+|+++|.+||+. +.|+
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g~l~v~n-~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEGCLRVIN-EETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred hhhcchheeEeecCCCCCccccceEEEec-cceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 5677899999999988 455566776664 455666655321 11225689999999999999999998 5999
Q ss_pred HHHHHcCcceEEEeecccCCCCceeeeecc--------------------------------------------------
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------- 286 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------- 286 (648)
|.+++.|-|.-+|+||-|||||||||.|..
T Consensus 107 V~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~ 186 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKRE 186 (809)
T ss_pred HHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999991100
Q ss_pred ---------------------------------------------------------------------------cCCCC
Q 047843 287 ---------------------------------------------------------------------------ASENG 291 (648)
Q Consensus 287 ---------------------------------------------------------------------------~~~~g 291 (648)
...+.
T Consensus 187 ~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~ 266 (809)
T KOG0247|consen 187 AMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGN 266 (809)
T ss_pred hccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCC
Confidence 00223
Q ss_pred cccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC---CCeeeeeeEEEEcCCCcccCC
Q 047843 292 LNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS---GSILRSCLHLVDLAGSERVDK 368 (648)
Q Consensus 292 ~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~~~SkL~LVDLAGSER~~k 368 (648)
.+|.|++++.|.|.+|+++++..|.++|++++|.+|..|||||+||+|.+-+...+ +....|.|.|||||||||..+
T Consensus 267 ~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~r 346 (809)
T KOG0247|consen 267 MYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNR 346 (809)
T ss_pred eeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhccc
Confidence 57899999999999999999999999999999999999999999999999876554 567789999999999999999
Q ss_pred ccchhhhhHHHHHhhhhHHHHHHHHHHHhhC-----CCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHH
Q 047843 369 SEVTGDRLKEAQYINKSLSCLGDVITALAQK-----NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVST 443 (648)
Q Consensus 369 s~a~G~rlkEa~~INkSLsaLg~VI~ALs~~-----~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsT 443 (648)
+++.|.|++||.+||.||.+||+||.+|.++ +.+|||||||||++++.+|.|..+.+||+||+|...+|+|+++.
T Consensus 347 tq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~v 426 (809)
T KOG0247|consen 347 TQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNV 426 (809)
T ss_pred ccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHH
Confidence 9999999999999999999999999999863 46899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccC
Q 047843 444 LKFAQRVSTVELG 456 (648)
Q Consensus 444 LrFA~Rak~I~~~ 456 (648)
|+||.-+..|...
T Consensus 427 lkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 427 LKFAEIAQEVEVA 439 (809)
T ss_pred HHHHHhccccccc
Confidence 9999999988653
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4e-51 Score=458.89 Aligned_cols=283 Identities=43% Similarity=0.621 Sum_probs=234.4
Q ss_pred CCCeEEEEEeCCCCcccCCceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHcCcce
Q 047843 188 RGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMDGYNV 266 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLdGyN~ 266 (648)
-.+++++++..|-..++ -+... .+...+... ......|.||+||++.++|++||+. +.|++++++.|||+
T Consensus 21 ~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~-----~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~ 91 (568)
T COG5059 21 VSDIKSTIRIIPGELGE---RLINT-SKKSHVSLE-----KSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNC 91 (568)
T ss_pred ecCceEEEeecCCCcch---heeec-ccccccccc-----cccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccc
Confidence 45788888888865443 11111 111111111 1115679999999999999999998 69999999999999
Q ss_pred EEEeecccCCCCceeeeecc-------------------------------------------------------cCCCC
Q 047843 267 CIFAYGQTGSGKTHTMIRSC-------------------------------------------------------ASENG 291 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~~-------------------------------------------------------~~~~g 291 (648)
||||||||||||||||.|.. ....|
T Consensus 92 TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~ 171 (568)
T COG5059 92 TVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLG 171 (568)
T ss_pred eEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCc
Confidence 99999999999999993211 12457
Q ss_pred cccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCCee-eeeeEEEEcCCCcccCCcc
Q 047843 292 LNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSIL-RSCLHLVDLAGSERVDKSE 370 (648)
Q Consensus 292 ~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~-~SkL~LVDLAGSER~~ks~ 370 (648)
+.+.++++..+.+.+|++.+|+.|..+|.++.|.+|..|||||+||++++.+.+...... .++|+||||||||++..++
T Consensus 172 v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~ 251 (568)
T COG5059 172 VKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTG 251 (568)
T ss_pred eEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhh
Confidence 788999999999999999999999999999999999999999999999999887644433 3699999999999999999
Q ss_pred chhhhhHHHHHhhhhHHHHHHHHHHHhh--CCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHH
Q 047843 371 VTGDRLKEAQYINKSLSCLGDVITALAQ--KNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQ 448 (648)
Q Consensus 371 a~G~rlkEa~~INkSLsaLg~VI~ALs~--~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~ 448 (648)
..+.+++|+..||+||.+||+||.+|.. +..|||||+|||||+||++|||+++|.|||||+|...+++||.+||+||.
T Consensus 252 ~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~ 331 (568)
T COG5059 252 NRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFAS 331 (568)
T ss_pred cccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999997 78899999999999999999999999999999999999999999999999
Q ss_pred HhcccccCccccc--cchHHHHHHHHHHHHHHH
Q 047843 449 RVSTVELGAARVN--KESNEVMQLKEQIESLKK 479 (648)
Q Consensus 449 Rak~I~~~~~~~~--~~~~~i~~Lk~eI~~LK~ 479 (648)
|++.|++.+..+. .....+..++.++...+.
T Consensus 332 rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 364 (568)
T COG5059 332 RAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRS 364 (568)
T ss_pred HHhhcCCcccccCcCcchHHHHHHHhhhhhhhh
Confidence 9999998766552 233344444444444333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.4e-49 Score=387.69 Aligned_cols=175 Identities=57% Similarity=0.867 Sum_probs=160.1
Q ss_pred HHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhccccccccc
Q 047843 249 VFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINN 328 (648)
Q Consensus 249 Vf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~ 328 (648)
||+.+.|+|+.+++|||+||||||||||||||||++... ..|+. + ...+++++++..|..+|.++.|.+|.
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~-~~Gii-p-------~~~~~~~~ll~~g~~~R~~~~t~~N~ 78 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKRE-GAGII-P-------RTVTDVIDLMDKGNANRTTAATAMNE 78 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCC-CCCcc-h-------HHHHHHHHHHhhccccccccccCCCC
Confidence 999977999999999999999999999999999998753 33432 1 23455999999999999999999999
Q ss_pred CCCCceEEEEEEEEEeeCC----CCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCC
Q 047843 329 RSSRSHSVLTIHVHGKDTS----GSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIP 404 (648)
Q Consensus 329 ~SSRSH~IftI~V~~~~~~----~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIP 404 (648)
.|||||+||+|+|.+.+.. +....|+|+||||||||+.++++..+++++|+..||+||++|++||.+|++++.|||
T Consensus 79 ~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vp 158 (186)
T cd01363 79 HSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVP 158 (186)
T ss_pred ccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999876642 345679999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccccccCCCcceeEEEecCC
Q 047843 405 YRNSKLTLLLQDSLGGRAKTLMFAHVSP 432 (648)
Q Consensus 405 YRdSKLTrLLqdSLGGNSkT~mI~~ISP 432 (648)
||+||||+||||+|||||+|+||+||||
T Consensus 159 yr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 159 YRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred CcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 9999999999999999999999999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.87 E-value=8.1e-11 Score=133.80 Aligned_cols=236 Identities=31% Similarity=0.388 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHH----hhhhhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCCccc--CCceEEEEc----CCCeEEE
Q 047843 151 SDLEDLGNQVQEMSSA----ALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAE--TKNVIEFIG----EDGSLVI 220 (648)
Q Consensus 151 ~~~~~~~~~~~e~~~~----~~~~~~~~~err~l~N~l~elkGnIRV~vRVRP~~~~E--~~~~i~~~~----~d~~vvi 220 (648)
..+..++..+..+... ...| ++...+|.||+.+...+ +++|+|+|+|..... ..+...|.. -.+.+..
T Consensus 265 ~sLl~Lg~vI~~L~~~~~~~~ipy-ReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~ 342 (568)
T COG5059 265 KSLLTLGNVINALGDKKKSGHIPY-RESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQV 342 (568)
T ss_pred hhHHHHHHHHHHHhccccCCccch-hhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccc
Confidence 3455566666666531 1223 35578899999999999 999999999987432 211111111 1111111
Q ss_pred eCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeeccc------------C
Q 047843 221 LDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA------------S 288 (648)
Q Consensus 221 ~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~------------~ 288 (648)
..+ .........|.||.+|.+...+..++.....+++..++| +++||++++|+++||.-... .
T Consensus 343 ~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (568)
T COG5059 343 NSS-SDSSREIEEIKFDLSEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFER 417 (568)
T ss_pred cCc-CcchHHHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhh
Confidence 110 000111347999999999999999999999999999999 99999999999999921100 0
Q ss_pred CCCcccC--------------------------------------------CCcEEEecCHHHHHHHHHhhhhhhccccc
Q 047843 289 ENGLNLP--------------------------------------------DATMHSVKSTADVLQLMKLGELNRAVSST 324 (648)
Q Consensus 289 ~~g~~V~--------------------------------------------~lt~~~V~S~eevl~lL~~G~~nR~~~sT 324 (648)
....... .+.........+..... .....+....+
T Consensus 418 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 496 (568)
T COG5059 418 KKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESE-KASKLRSSAST 496 (568)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh-hhccchhhccc
Confidence 0000000 00000001111111121 34556778889
Q ss_pred ccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHh
Q 047843 325 AINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALA 397 (648)
Q Consensus 325 ~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs 397 (648)
..|.+++++|.+|+.+..+......... +++|||||+||. .+.+.|.++++...+|++|..++++|.++.
T Consensus 497 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~--~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 497 KLNLRSSRSHSKFRDHLNGSNSSTKELS--LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred chhhhhcccchhhhhcccchhhhhHHHH--hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 9999999999999988865433211111 899999999999 999999999999999999999999998864
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.65 E-value=0.017 Score=58.56 Aligned_cols=49 Identities=22% Similarity=0.501 Sum_probs=32.8
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
.|+||.-+. +.+++..|..+..+...--..||. +|-||++|+||||-|-
T Consensus 4 ~~tFdnfv~-g~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 4 KYTFDNFVV-GESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp T-SCCCS---TTTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCccccCCc-CCcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 589998554 345777777766665552223454 7889999999999873
No 32
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.03 E-value=0.14 Score=56.77 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=30.6
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHHH-HHHc--C--cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLIR-SVMD--G--YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV~-svLd--G--yN~~IfAYGQTGSGKTyTM 282 (648)
.++|+.|-+.+..-+++-+.+ .|+.. ..+. | ..-.|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 466777776544444444443 34332 2333 2 2456888999999999986
No 33
>PRK06620 hypothetical protein; Validated
Probab=92.71 E-value=0.044 Score=55.54 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=35.6
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcc---eEEEeecccCCCCceeeee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYN---VCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN---~~IfAYGQTGSGKTyTMi~ 284 (648)
...|+||..+.. .++...|..+..+.+. -|+| -.++-||++||||||.+-.
T Consensus 10 ~~~~tfd~Fvvg-~~N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 10 SSKYHPDEFIVS-SSNDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCchhhEec-ccHHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 346899986654 4456678776555432 1444 3589999999999999843
No 34
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.02 E-value=0.077 Score=61.84 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=36.3
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
...|+||..+-.. ++..+|..+..++...-.+||. ||-||.+|+||||-+.
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 3569999855433 3455666666666554456786 8999999999999984
No 35
>PRK06893 DNA replication initiation factor; Validated
Probab=91.92 E-value=0.098 Score=53.19 Aligned_cols=48 Identities=15% Similarity=0.240 Sum_probs=32.4
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
...++||..++... ..-+ ..+.+.+-+++|..++-||++|+||||-+.
T Consensus 10 ~~~~~fd~f~~~~~-~~~~----~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 10 IDDETLDNFYADNN-LLLL----DSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCcccccccccCCh-HHHH----HHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 34688999886542 2211 122233345788889999999999999974
No 36
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.64 E-value=0.082 Score=59.00 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=34.0
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...|+||.... +..+...|..+..+...--..|| .+|-||++|+||||.+
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLL 165 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHH
Confidence 35689998432 34566677766555554223455 4788999999999998
No 37
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.59 E-value=0.088 Score=57.77 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=33.5
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...|+||...- +..+...|..+..+...--..|| .++-||++|+||||.+
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n-~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLL 153 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCC-eEEEECCCCCcHHHHH
Confidence 35789998432 34566677666555554212244 4778999999999998
No 38
>PRK12377 putative replication protein; Provisional
Probab=91.35 E-value=0.13 Score=53.63 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=49.2
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecc--cCCCCcccCCCcEEEecCHHHHHHHH
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC--ASENGLNLPDATMHSVKSTADVLQLM 312 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~--~~~~g~~V~~lt~~~V~S~eevl~lL 312 (648)
+||........|..++..+..++..+..+. ..++-||++|+||||.+...+ ....| .+ +.+.+..+++..+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AIa~~l~~~g-----~~-v~~i~~~~l~~~l 144 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAAIGNRLLAKG-----RS-VIVVTVPDVMSRL 144 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHHHHHcC-----CC-eEEEEHHHHHHHH
Confidence 566644445567778888888888877664 467889999999999984322 11222 22 2444667788777
Q ss_pred Hhhh
Q 047843 313 KLGE 316 (648)
Q Consensus 313 ~~G~ 316 (648)
..+.
T Consensus 145 ~~~~ 148 (248)
T PRK12377 145 HESY 148 (248)
T ss_pred HHHH
Confidence 6553
No 39
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.19 E-value=0.097 Score=58.62 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=35.1
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
...|+||.-+- ..++...|..+..+... -..||. +|-||++|+||||-|.
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCccccccc-CCchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 45689998664 34566677766555443 122675 9999999999999983
No 40
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.98 E-value=0.13 Score=52.61 Aligned_cols=48 Identities=17% Similarity=0.347 Sum_probs=32.8
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
...|+||..+.. .+...+..+..+.. ......++-||++|+||||.+.
T Consensus 16 ~~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 16 PDDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 345788875543 56667766655433 2223478999999999999984
No 41
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.93 E-value=0.19 Score=57.20 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=27.0
Q ss_pred hHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
....+..++..-++-|+.-|+||||||.||
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTL 275 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTL 275 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHH
Confidence 455788889999999999999999999999
No 42
>PF13479 AAA_24: AAA domain
Probab=90.67 E-value=0.25 Score=49.75 Aligned_cols=50 Identities=32% Similarity=0.478 Sum_probs=34.1
Q ss_pred ceEEEeecccCCCCceeeeec-----ccCCCC---ccc-CCCcEEEecCHHHHHHHHHh
Q 047843 265 NVCIFAYGQTGSGKTHTMIRS-----CASENG---LNL-PDATMHSVKSTADVLQLMKL 314 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTMi~~-----~~~~~g---~~V-~~lt~~~V~S~eevl~lL~~ 314 (648)
+..++-||++|+|||++.... ...++| +.. .+...+.|.+++++++.+..
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~ 61 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDE 61 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHH
Confidence 457889999999999986211 011333 322 25677888899999997754
No 43
>PRK08116 hypothetical protein; Validated
Probab=90.45 E-value=0.16 Score=53.21 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=47.1
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHc--CcceEEEeecccCCCCceeeeeccc--CCCCcccCCCcEEEecCHHHH
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMD--GYNVCIFAYGQTGSGKTHTMIRSCA--SENGLNLPDATMHSVKSTADV 308 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLd--GyN~~IfAYGQTGSGKTyTMi~~~~--~~~g~~V~~lt~~~V~S~eev 308 (648)
.++||... .+..+...|..+...++.+.+ +.+..++-||.+|+||||.+..... ...| . .+...+..++
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~-----~-~v~~~~~~~l 153 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG-----V-PVIFVNFPQL 153 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC-----C-eEEEEEHHHH
Confidence 45677643 456667778777777877654 3456799999999999999732211 1112 1 2334456777
Q ss_pred HHHHHh
Q 047843 309 LQLMKL 314 (648)
Q Consensus 309 l~lL~~ 314 (648)
+..+..
T Consensus 154 l~~i~~ 159 (268)
T PRK08116 154 LNRIKS 159 (268)
T ss_pred HHHHHH
Confidence 665543
No 44
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=90.32 E-value=0.71 Score=50.07 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.3
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
.-.|+-||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345888999999999886
No 45
>PRK05642 DNA replication initiation factor; Validated
Probab=90.30 E-value=0.17 Score=51.74 Aligned_cols=49 Identities=16% Similarity=0.383 Sum_probs=29.6
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceeee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTMi 283 (648)
..|+||.-+.. .+...+..+..+.... .++ ...++-||.+|+||||-+-
T Consensus 14 ~~~tfdnF~~~--~~~~a~~~~~~~~~~~-~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPG--ANAAALGYVERLCEAD-AGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcC--ChHHHHHHHHHHhhcc-ccCCCCeEEEECCCCCCHHHHHH
Confidence 46899987733 2333444333332211 122 3567899999999999973
No 46
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.29 E-value=0.16 Score=52.73 Aligned_cols=75 Identities=17% Similarity=0.255 Sum_probs=46.3
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecc--cCCCCcccCCCcEEEecCHHHHHHH
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC--ASENGLNLPDATMHSVKSTADVLQL 311 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~--~~~~g~~V~~lt~~~V~S~eevl~l 311 (648)
.+||........|..++..+...++....|+. .++-||.+|+||||.+...+ ....| .+ +.+-+..+++..
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~aia~~l~~~g-----~~-v~~it~~~l~~~ 141 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAAICNELLLRG-----KS-VLIITVADIMSA 141 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHHHHHHHHhcC-----Ce-EEEEEHHHHHHH
Confidence 45665433345577788777777776655543 68899999999999974322 11222 22 233367777776
Q ss_pred HHhh
Q 047843 312 MKLG 315 (648)
Q Consensus 312 L~~G 315 (648)
+...
T Consensus 142 l~~~ 145 (244)
T PRK07952 142 MKDT 145 (244)
T ss_pred HHHH
Confidence 6544
No 47
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.90 E-value=0.19 Score=54.21 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=26.3
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
-+++..+++--++-|+.-|+||||||.||
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 45778888999999999999999999998
No 48
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.93 E-value=0.18 Score=56.26 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=46.8
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee--eecccCCCCcccCCCcEEEecCHHHH
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM--IRSCASENGLNLPDATMHSVKSTADV 308 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM--i~~~~~~~g~~V~~lt~~~V~S~eev 308 (648)
...|+||... ++.++.-.|..+..+-+.--.-|| -||-||.+|+||||-| ++... .-..+++..+.+++..-+
T Consensus 81 ~~~ytFdnFv-~g~~N~~A~aa~~~va~~~g~~~n-plfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~se~f~ 155 (408)
T COG0593 81 NPKYTFDNFV-VGPSNRLAYAAAKAVAENPGGAYN-PLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLTSEDFT 155 (408)
T ss_pred CCCCchhhee-eCCchHHHHHHHHHHHhccCCcCC-cEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEeccHHHHH
Confidence 3469999844 345555555543332222212255 4789999999999999 33322 123456667777776655
Q ss_pred HHHHHh
Q 047843 309 LQLMKL 314 (648)
Q Consensus 309 l~lL~~ 314 (648)
..++..
T Consensus 156 ~~~v~a 161 (408)
T COG0593 156 NDFVKA 161 (408)
T ss_pred HHHHHH
Confidence 555544
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=88.92 E-value=0.29 Score=48.54 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=33.0
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|+||.... . .+..+++.++.++. .+....|+-||++|+||||.+
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~l~~~~~---~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAALRQLAA---GKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHH
Confidence 3578887663 2 45666666555433 456778999999999999987
No 50
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=88.91 E-value=0.28 Score=49.15 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=31.7
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...|+||.+++ .. .+.++..+..++.. .+.+..++-||.+|+||||.+
T Consensus 12 ~~~~~~d~f~~-~~-~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 12 PPPPTFDNFVA-GE-NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CChhhhccccc-CC-cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 34588999873 22 23444444444442 234567899999999999987
No 51
>PRK06835 DNA replication protein DnaC; Validated
Probab=88.85 E-value=0.17 Score=54.78 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=38.1
Q ss_pred hhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHh
Q 047843 247 DDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKL 314 (648)
Q Consensus 247 eeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~ 314 (648)
..+++.+...++.+-.+. -.++-||+||+||||.+...... +.-.+. .+...+..+++..+..
T Consensus 166 ~~~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~---l~~~g~-~V~y~t~~~l~~~l~~ 228 (329)
T PRK06835 166 EKILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKE---LLDRGK-SVIYRTADELIEILRE 228 (329)
T ss_pred HHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHH---HHHCCC-eEEEEEHHHHHHHHHH
Confidence 345555566777776555 56999999999999987322110 001122 3344556777776654
No 52
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.77 E-value=0.2 Score=56.31 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=43.8
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHH
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLM 312 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL 312 (648)
.|+||..+.. .+++..|..+..+...-=..|| .+|-||.+|+||||.|...... -.-.-++...+.++ .+++...+
T Consensus 111 ~~tFdnFv~g-~~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~Ai~~~-l~~~~~~~~v~yv~-~~~f~~~~ 186 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKAAKNY-IESNFSDLKVSYMS-GDEFARKA 186 (450)
T ss_pred ccchhcccCC-CcHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHHHHHH-HHHhCCCCeEEEEE-HHHHHHHH
Confidence 5899995543 3456677665555432111245 4789999999999998322110 00011234444444 45666555
Q ss_pred Hhh
Q 047843 313 KLG 315 (648)
Q Consensus 313 ~~G 315 (648)
..+
T Consensus 187 ~~~ 189 (450)
T PRK14087 187 VDI 189 (450)
T ss_pred HHH
Confidence 444
No 53
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=88.14 E-value=1.3 Score=48.90 Aligned_cols=18 Identities=33% Similarity=0.558 Sum_probs=15.4
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 346888999999999886
No 54
>PRK09087 hypothetical protein; Validated
Probab=87.62 E-value=0.33 Score=49.65 Aligned_cols=51 Identities=14% Similarity=0.088 Sum_probs=33.4
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecc
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC 286 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~ 286 (648)
...|+||..+...+ +..+|..+..+ ..-.+-.++-||++||||||-+--.+
T Consensus 15 ~~~~~~~~Fi~~~~-N~~a~~~l~~~----~~~~~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 15 DPAYGRDDLLVTES-NRAAVSLVDHW----PNWPSPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCCCChhceeecCc-hHHHHHHHHhc----ccCCCCeEEEECCCCCCHHHHHHHHH
Confidence 34688999775443 45577754322 22235568999999999999985433
No 55
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=87.43 E-value=1.1 Score=50.08 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=31.6
Q ss_pred ceEEEeecccCCCCceeeeecc------cCCC------------C--------cccCCCcEEEecCHHHHHHHHH
Q 047843 265 NVCIFAYGQTGSGKTHTMIRSC------ASEN------------G--------LNLPDATMHSVKSTADVLQLMK 313 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTMi~~~------~~~~------------g--------~~V~~lt~~~V~S~eevl~lL~ 313 (648)
..-|.-.|+||.|||.|+-... .... | -.+-|+....|.++.|+...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 5566678999999999981100 0000 1 0245677788888888877765
No 56
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=87.07 E-value=0.3 Score=45.81 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=19.0
Q ss_pred HHHHHcC-cceEEEeecccCCCCceeeee
Q 047843 257 IRSVMDG-YNVCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 257 V~svLdG-yN~~IfAYGQTGSGKTyTMi~ 284 (648)
++.+-.+ ...-++..++||||||++|+.
T Consensus 16 ~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 16 INSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 3443333 345556678999999999964
No 57
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=87.07 E-value=0.4 Score=51.23 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=31.9
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcC-cceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdG-yN~~IfAYGQTGSGKTyTM 282 (648)
|.-|++.+.-...++-++.+...+..++.| ...+++-||++|+|||+++
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 333444443344555555555556665654 5568999999999999997
No 58
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=86.98 E-value=1.1 Score=46.63 Aligned_cols=88 Identities=17% Similarity=0.225 Sum_probs=52.2
Q ss_pred EEEeecccCCCCceee---eec--ccCCCCcccC------------------CCcEEEecCHHHHHHHHHhhhhhhcccc
Q 047843 267 CIFAYGQTGSGKTHTM---IRS--CASENGLNLP------------------DATMHSVKSTADVLQLMKLGELNRAVSS 323 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM---i~~--~~~~~g~~V~------------------~lt~~~V~S~eevl~lL~~G~~nR~~~s 323 (648)
.|...|++|+|||.++ .+. .....|..-. ......+.+.+++..++..... +..+.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~-~~~~~ 106 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETD-RVTGT 106 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHH-HhcCC
Confidence 3678999999999997 121 1111121100 0111234678888888876543 22111
Q ss_pred cccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCccc
Q 047843 324 TAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERV 366 (648)
Q Consensus 324 T~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~ 366 (648)
...-|.-++.|.|.+.+. -.|.||||+|-.+.
T Consensus 107 -----~~~~s~~~i~l~i~~p~~------~~ltLIDlPGl~~~ 138 (240)
T smart00053 107 -----NKGISPVPINLRVYSPHV------LNLTLIDLPGITKV 138 (240)
T ss_pred -----CCcccCcceEEEEeCCCC------CceEEEeCCCcccc
Confidence 124566788888877653 35999999999653
No 59
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=86.86 E-value=0.55 Score=53.93 Aligned_cols=47 Identities=34% Similarity=0.544 Sum_probs=34.2
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|....-|.|.-+|-+ .+..||+.+-.|..--+ --|.|||||||||
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~ 49 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTM 49 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHH
Confidence 35777777888888764 34556777766665443 4599999999999
No 60
>PRK08939 primosomal protein DnaI; Reviewed
Probab=85.27 E-value=0.46 Score=50.94 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=33.5
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcC-cceEEEeecccCCCCceeee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDG-YNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdG-yN~~IfAYGQTGSGKTyTMi 283 (648)
.+||.+-.....+..++..+...++....| ..-.++-||++|+||||-+.
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 456654333335666776656666665543 23468999999999999983
No 61
>PRK08727 hypothetical protein; Validated
Probab=85.16 E-value=0.53 Score=48.10 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=27.6
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceeee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTMi 283 (648)
..|+||.-+...+ + ....+.. +..|+ .-.|+-||++|+||||-+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~~~~----~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQLQA----LAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHHHHHH----HHhccCCCeEEEECCCCCCHHHHHH
Confidence 4578888664333 2 2222222 22233 2459999999999999974
No 62
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=85.12 E-value=11 Score=39.83 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.7
Q ss_pred cCcceEEEeecccCCCCceeee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTMi 283 (648)
.|++..|+..|++|+|||..+-
T Consensus 1 ~g~~f~I~vvG~sg~GKSTliN 22 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFIN 22 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHHH
Confidence 4899999999999999998863
No 63
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=84.89 E-value=0.32 Score=42.35 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=14.1
Q ss_pred EEeecccCCCCceeee
Q 047843 268 IFAYGQTGSGKTHTMI 283 (648)
Q Consensus 268 IfAYGQTGSGKTyTMi 283 (648)
++.+|+||+|||++++
T Consensus 3 ~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 3 VLLAAPTGSGKTLAAL 18 (144)
T ss_pred EEEECCCCCchhHHHH
Confidence 5678999999999984
No 64
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=84.73 E-value=0.53 Score=52.99 Aligned_cols=50 Identities=30% Similarity=0.490 Sum_probs=34.3
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHH--HcC--cceEEEeecccCCCCceee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSV--MDG--YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~sv--LdG--yN~~IfAYGQTGSGKTyTM 282 (648)
...|+||.-.- +.+++..|..+..+.... ..| ||. +|-||++|+||||.+
T Consensus 105 ~~~~tFdnFv~-g~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl 158 (445)
T PRK12422 105 DPLMTFANFLV-TPENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLM 158 (445)
T ss_pred Cccccccceee-CCcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHH
Confidence 45799998664 345666676666655433 223 454 678999999999998
No 65
>PRK06526 transposase; Provisional
Probab=84.69 E-value=0.42 Score=49.90 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=34.4
Q ss_pred eCCCCChhhHHhc-hHHHHHHHHcCcceEEEeecccCCCCceeeeec--ccCCCCcccCCCcEEEecCHHHHHHHHHh
Q 047843 240 FGPTATQDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRS--CASENGLNLPDATMHSVKSTADVLQLMKL 314 (648)
Q Consensus 240 F~~~asQeeVf~~-v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~--~~~~~g~~V~~lt~~~V~S~eevl~lL~~ 314 (648)
+.+.-++..+..- ....+. .+.| |+-||++|+||||.+... .....|..| ...+..+++..+..
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~~~a~~~g~~v------~f~t~~~l~~~l~~ 143 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLGIRACQAGHRV------LFATAAQWVARLAA 143 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHHHHHHHCCCch------hhhhHHHHHHHHHH
Confidence 3344444444432 233343 4454 788999999999998422 111223222 22456666666643
No 66
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.64 E-value=0.62 Score=48.60 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=60.5
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHH
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMK 313 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~ 313 (648)
|.|..+-.....+..+|..+..++..+-.|.| ++-||++|+||||-.+... +.+.-.|.+... .+..|+++-|.
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~Ai~---~~l~~~g~sv~f-~~~~el~~~Lk 149 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIAIG---NELLKAGISVLF-ITAPDLLSKLK 149 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHHHH---HHHHHcCCeEEE-EEHHHHHHHHH
Confidence 33333333455778888888777777765555 4569999999999873221 111112333333 44556666665
Q ss_pred hhhhhhcccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCcccCCc
Q 047843 314 LGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKS 369 (648)
Q Consensus 314 ~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~~ks 369 (648)
.+...=. ....+. .......|.++|=-|.|+.+..
T Consensus 150 ~~~~~~~-~~~~l~--------------------~~l~~~dlLIiDDlG~~~~~~~ 184 (254)
T COG1484 150 AAFDEGR-LEEKLL--------------------RELKKVDLLIIDDIGYEPFSQE 184 (254)
T ss_pred HHHhcCc-hHHHHH--------------------HHhhcCCEEEEecccCccCCHH
Confidence 5543200 000000 0012345788888899986653
No 67
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=84.53 E-value=3.2 Score=49.28 Aligned_cols=82 Identities=24% Similarity=0.379 Sum_probs=50.1
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee------ecccCCCCcccCCCcEEEecCHHHHH----HHHHhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI------RSCASENGLNLPDATMHSVKSTADVL----QLMKLGE 316 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi------~~~~~~~g~~V~~lt~~~V~S~eevl----~lL~~G~ 316 (648)
-||.-+......++ .|.|-||+.-|.+|||||.|.- ......++ . +.+.++.+ -+|+ +-
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~--------~~~i~~~i~~~npiLE-AF 137 (674)
T cd01378 68 HIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-K--------VERVKDVILQSNPLLE-AF 137 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-c--------cccHHHHHHHHHHHHH-Hh
Confidence 47766544445544 6899999999999999999971 11111110 0 12223211 2221 11
Q ss_pred hhhcccccccccCCCCceEEEEEEEE
Q 047843 317 LNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 317 ~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---++.|+..
T Consensus 138 ---GNAkT~~N~NSSRFgk~~~l~f~ 160 (674)
T cd01378 138 ---GNAKTLRNNNSSRFGKYMEIQFD 160 (674)
T ss_pred ---hccccCCCCCcchhheeEEEEEC
Confidence 12568899999998888888774
No 68
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=84.44 E-value=0.72 Score=49.88 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=26.3
Q ss_pred ChhhHHhchHHHHHHHHc-CcceEEEeecccCCCCceee
Q 047843 245 TQDDVFKDTQPLIRSVMD-GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 245 sQeeVf~~v~plV~svLd-GyN~~IfAYGQTGSGKTyTM 282 (648)
.-++-++.+...+...+. +....++-||++|+|||+++
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 344455555555555554 34567889999999999998
No 69
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=84.35 E-value=3.1 Score=49.38 Aligned_cols=83 Identities=29% Similarity=0.361 Sum_probs=50.1
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee------ecccCCCCcccCCCcEEEecCHHH----HHHHHHhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI------RSCASENGLNLPDATMHSVKSTAD----VLQLMKLG 315 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi------~~~~~~~g~~V~~lt~~~V~S~ee----vl~lL~~G 315 (648)
-.||.-+......++ .|.|-||+.-|.+|||||.|.- .......+ ...+.++ ..-+|+ +
T Consensus 73 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~---------~~~~i~~~i~~~n~iLE-A 142 (677)
T smart00242 73 PHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT---------SVGSVEDQILESNPILE-A 142 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC---------ccccHHHHHHHHHHHHH-H
Confidence 457776544444444 6899999999999999999971 11111110 0112222 112222 1
Q ss_pred hhhhcccccccccCCCCceEEEEEEEE
Q 047843 316 ELNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 316 ~~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
- --+.|..|..|||---++.|+..
T Consensus 143 F---GNAkT~~N~NSSRfgk~~~l~f~ 166 (677)
T smart00242 143 F---GNAKTVRNNNSSRFGKFIEIHFD 166 (677)
T ss_pred h---hccccCCCCCccchheeEEEEEC
Confidence 1 12568999999998888888774
No 70
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.22 E-value=0.73 Score=40.56 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=18.0
Q ss_pred HHHHcCcceEEEeecccCCCCceee
Q 047843 258 RSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 258 ~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+.......++-+|++|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334456888999999999876
No 71
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.07 E-value=0.76 Score=50.56 Aligned_cols=32 Identities=31% Similarity=0.573 Sum_probs=23.6
Q ss_pred hchHHHHHHHHcCcceE-EEeecccCCCCceee
Q 047843 251 KDTQPLIRSVMDGYNVC-IFAYGQTGSGKTHTM 282 (648)
Q Consensus 251 ~~v~plV~svLdGyN~~-IfAYGQTGSGKTyTM 282 (648)
+.+..++..++.|.-.. ++.||.||+|||.|+
T Consensus 27 ~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 27 NQLASFLAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 33444566666665444 999999999999997
No 72
>PRK10436 hypothetical protein; Provisional
Probab=82.89 E-value=1.1 Score=50.79 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=23.0
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..++..-++.|+-.|+||||||.||
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 455666677889999999999999998
No 73
>PRK08181 transposase; Validated
Probab=82.81 E-value=0.7 Score=48.78 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=28.4
Q ss_pred cCcceEEEeecccCCCCceeeeecc--cCCCCcccCCCcEEEecCHHHHHHHHHhh
Q 047843 262 DGYNVCIFAYGQTGSGKTHTMIRSC--ASENGLNLPDATMHSVKSTADVLQLMKLG 315 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTMi~~~--~~~~g~~V~~lt~~~V~S~eevl~lL~~G 315 (648)
.|.| |+-||++|+||||-+.... ....|. . +...+..+++..+..+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~-----~-v~f~~~~~L~~~l~~a 152 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLALIENGW-----R-VLFTRTTDLVQKLQVA 152 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHHHHcCC-----c-eeeeeHHHHHHHHHHH
Confidence 4555 7889999999999974321 112232 2 2333567777777654
No 74
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=82.56 E-value=5.2 Score=47.95 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=49.3
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee---eecccCCCCcccCCCcEEEecCHHH----HHHHHHhhhhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM---IRSCASENGLNLPDATMHSVKSTAD----VLQLMKLGELNR 319 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM---i~~~~~~~g~~V~~lt~~~V~S~ee----vl~lL~~G~~nR 319 (648)
.||.-+......++ .|.|-||+.-|.+|||||.|. +.-.....|-. .+.++ ..-+|+ + =
T Consensus 73 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~---------~~i~~~il~snpiLE-A---F 139 (717)
T cd01382 73 HVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG---------QDIDDRIVEANPLLE-A---F 139 (717)
T ss_pred cHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC---------ccHHHHHHHHHHHHH-H---h
Confidence 46766544444444 689999999999999999996 11111000100 12221 111221 1 1
Q ss_pred cccccccccCCCCceEEEEEEEE
Q 047843 320 AVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 320 ~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---++.|+..
T Consensus 140 GNAkT~~N~NSSRFGK~~~l~f~ 162 (717)
T cd01382 140 GNAKTVRNNNSSRFGKFVEIHFN 162 (717)
T ss_pred hccccCCCCCcccceeEEEEEEC
Confidence 12568899999999888888774
No 75
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=82.41 E-value=4.5 Score=48.12 Aligned_cols=86 Identities=24% Similarity=0.293 Sum_probs=49.6
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---ecccCCCCcccCCCcEEEecCHHHH----HHHHHhhhhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RSCASENGLNLPDATMHSVKSTADV----LQLMKLGELNR 319 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~~~~~~g~~V~~lt~~~V~S~eev----l~lL~~G~~nR 319 (648)
-||.-+......++ .|.|.||+.-|.+|||||.|.- .-.....|..-. ...+.++- .-+|+ +-
T Consensus 70 HifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~-----~~~~i~~~il~~npiLE-AF--- 140 (674)
T cd01384 70 HVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGV-----EGRTVEQQVLESNPVLE-AF--- 140 (674)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCc-----ccccHHHHHHHHHHHHH-Hh---
Confidence 46765544444444 6899999999999999999961 111000010000 01122221 12222 11
Q ss_pred cccccccccCCCCceEEEEEEEE
Q 047843 320 AVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 320 ~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---++.|++.
T Consensus 141 GNAkT~~N~NSSRFGK~~~l~f~ 163 (674)
T cd01384 141 GNAKTVRNNNSSRFGKFVEIQFD 163 (674)
T ss_pred hCCCCCCCCCcchhheeEEEEEC
Confidence 12568899999998888888874
No 76
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=81.76 E-value=4.9 Score=47.78 Aligned_cols=84 Identities=25% Similarity=0.305 Sum_probs=50.2
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---ecccCCCCcccCCCcEEEecCHHHH----HHHHHhhhhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RSCASENGLNLPDATMHSVKSTADV----LQLMKLGELN 318 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~~~~~~g~~V~~lt~~~V~S~eev----l~lL~~G~~n 318 (648)
--||.-+......++ .|.|-||+.-|.+|||||.|.- .-...-.+-. ....++- .-+|+ +-
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~--------~~~i~~~i~~~n~iLE-aF-- 135 (679)
T cd00124 67 PHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN--------DTGIEEKILAANPILE-AF-- 135 (679)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC--------cchHHHHHHHHhHHHH-Hh--
Confidence 457776655555555 5999999999999999999961 1110000000 0111211 11221 11
Q ss_pred hcccccccccCCCCceEEEEEEEE
Q 047843 319 RAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 319 R~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---++.|++.
T Consensus 136 -GNAkT~~N~NSSRfGk~~~l~f~ 158 (679)
T cd00124 136 -GNAKTVRNNNSSRFGKFIELQFD 158 (679)
T ss_pred -cccccCCCCCcccceeEEEEEEC
Confidence 12568899999998888888764
No 77
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=81.63 E-value=2.9 Score=49.43 Aligned_cols=88 Identities=23% Similarity=0.275 Sum_probs=50.2
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee------ec-ccCCCCcccCCCcEEEecCHHHHHHHHHhhhhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI------RS-CASENGLNLPDATMHSVKSTADVLQLMKLGELN 318 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi------~~-~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~n 318 (648)
--||..+......++ .|-|-||+-.|.+|||||.|+- -. .....+ .....+ ......+.-+|+.
T Consensus 66 PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~---~~~~~i-~~~i~~~~~iLea---- 137 (689)
T PF00063_consen 66 PHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSS---SKSSSI-EKKILAANPILEA---- 137 (689)
T ss_dssp SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSS---TCTTHH-HHHHHHHHHHHHH----
T ss_pred CccchhhhcccccccccccccceeeccccccccccchHHHHHHHhhhcccccc---cccccc-cceEEeccchhhh----
Confidence 347776654445544 6899999999999999999961 11 111111 000000 0001111112221
Q ss_pred hcccccccccCCCCceEEEEEEEE
Q 047843 319 RAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 319 R~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
=-.+.|..|..|||---++.|+..
T Consensus 138 FGnAkT~~N~nSSRfgk~~~l~f~ 161 (689)
T PF00063_consen 138 FGNAKTPRNDNSSRFGKFIELQFD 161 (689)
T ss_dssp HHEEEESSETTEESSEEEEEEEEE
T ss_pred hcccccccCCcccccceEEEEEec
Confidence 113568999999998888888774
No 78
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.35 E-value=0.7 Score=53.50 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++..-++.|+-.|+||||||.||
T Consensus 306 ~~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 306 ALFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3566777778899999999999999998
No 79
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=81.27 E-value=4.4 Score=48.34 Aligned_cols=89 Identities=25% Similarity=0.294 Sum_probs=50.8
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---e---ccc-CCCCcccCCCcEEEecCHHHH----HHHHHh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---R---SCA-SENGLNLPDATMHSVKSTADV----LQLMKL 314 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~---~~~-~~~g~~V~~lt~~~V~S~eev----l~lL~~ 314 (648)
--||.-+......++ .|.|-||+.-|.+|||||.|.- . ... ....... ......+.++- .-+|+
T Consensus 72 PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~---~~~~~~~i~~~il~snpiLE- 147 (693)
T cd01377 72 PHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQ---SGKGQGTLEDQILQANPILE- 147 (693)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccc---cccccccHHHHHHHHHHHHH-
Confidence 457776554455554 6999999999999999999861 1 000 0000000 00011123321 11221
Q ss_pred hhhhhcccccccccCCCCceEEEEEEEE
Q 047843 315 GELNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 315 G~~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
+- --+.|..|..|||---++.|+..
T Consensus 148 AF---GNAkT~rN~NSSRFGK~i~l~f~ 172 (693)
T cd01377 148 AF---GNAKTVRNDNSSRFGKFIRIHFG 172 (693)
T ss_pred Hh---hccccCCCCCccccceeEEEEEC
Confidence 11 12568999999998888888774
No 80
>PRK06921 hypothetical protein; Provisional
Probab=81.04 E-value=1.1 Score=47.17 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=24.6
Q ss_pred hHHhchHHHHHHHHc---CcceEEEeecccCCCCceeee
Q 047843 248 DVFKDTQPLIRSVMD---GYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 248 eVf~~v~plV~svLd---GyN~~IfAYGQTGSGKTyTMi 283 (648)
.++..+...++.+-+ +..-.++-||++|+||||.+.
T Consensus 97 ~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 97 DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHH
Confidence 355545566665532 234568899999999999984
No 81
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=80.98 E-value=0.84 Score=42.56 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=20.6
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
++..++.|.| ++..|+||||||...+
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 4566667777 6788999999999873
No 82
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=80.97 E-value=0.54 Score=47.12 Aligned_cols=15 Identities=53% Similarity=0.899 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+.-+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999998
No 83
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.56 E-value=0.85 Score=51.97 Aligned_cols=28 Identities=32% Similarity=0.421 Sum_probs=23.5
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++..-++.|+-.|+||||||.||
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 3556677777888999999999999998
No 84
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=80.32 E-value=0.52 Score=42.37 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=13.3
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
+.+++-+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999997
No 85
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=80.16 E-value=0.62 Score=40.37 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=15.4
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
..++-+|++|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 457889999999999983
No 86
>PF12846 AAA_10: AAA-like domain
Probab=80.12 E-value=0.6 Score=47.43 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=15.6
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
|..++-.|.||||||++|
T Consensus 1 n~h~~i~G~tGsGKT~~~ 18 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLL 18 (304)
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 456788999999999998
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=79.56 E-value=0.89 Score=47.76 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=26.9
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.||.+.+ |+++.+.+..++. .|....++-||++|+|||+++
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAVD---SPNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHH
Confidence 5777664 5555554433332 344335788999999999997
No 88
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=79.48 E-value=7 Score=46.59 Aligned_cols=81 Identities=27% Similarity=0.363 Sum_probs=49.8
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---ecccC-CCCcccCCCcEEEecCHHH-HH---HHHHhhhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RSCAS-ENGLNLPDATMHSVKSTAD-VL---QLMKLGEL 317 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~~~~-~~g~~V~~lt~~~V~S~ee-vl---~lL~~G~~ 317 (648)
--||.-+......++ .|.|-||+.-|.+|||||.|.- .-... .++- +.++ ++ -+|+ +-
T Consensus 73 PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~-----------~i~~~il~snpiLE-aF- 139 (677)
T cd01383 73 PHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS-----------GIEYEILQTNPILE-AF- 139 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC-----------cHHHHHHHHHHHHH-Hh-
Confidence 357776655555555 5999999999999999999961 11110 0110 1111 11 1221 11
Q ss_pred hhcccccccccCCCCceEEEEEEEE
Q 047843 318 NRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 318 nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---++.|+..
T Consensus 140 --GNAkT~~N~NSSRFGK~~~l~f~ 162 (677)
T cd01383 140 --GNAKTSRNDNSSRFGKLIEIHFS 162 (677)
T ss_pred --hccccCCCCCcCccceeEEEEEC
Confidence 12568899999998888888774
No 89
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=79.16 E-value=0.46 Score=49.81 Aligned_cols=46 Identities=15% Similarity=0.480 Sum_probs=31.3
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcce-EEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNV-CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~-~IfAYGQTGSGKTyTM 282 (648)
...+|...+-+...+.+.+.+ ..++.|..+ .++-||..|+|||.++
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlV 69 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLV 69 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHH
Confidence 346777777666666666655 455666532 3456999999999886
No 90
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=79.12 E-value=0.98 Score=48.94 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=20.3
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..++.--.+.|+-.|+||||||.||
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHH
Confidence 344444433577889999999999998
No 91
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.96 E-value=3.4 Score=49.78 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.7
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 477889999999999983
No 92
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=78.84 E-value=0.73 Score=45.85 Aligned_cols=18 Identities=39% Similarity=0.608 Sum_probs=15.8
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
++.|+-.|+||||||.+|
T Consensus 1 ~GlilI~GptGSGKTTll 18 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTL 18 (198)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357888999999999997
No 93
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=78.68 E-value=4.5 Score=48.23 Aligned_cols=88 Identities=24% Similarity=0.270 Sum_probs=49.9
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---ecccCCCCcccCCCcEEEecCHHHH----HHHHHhhhhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RSCASENGLNLPDATMHSVKSTADV----LQLMKLGELNR 319 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~~~~~~g~~V~~lt~~~V~S~eev----l~lL~~G~~nR 319 (648)
-||.-+......++ .|.|-||+.-|.+|||||.|.- .-.....+..-.. ....+.++- .-+|+. -
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~---~~~~~i~~~il~snpiLEA-F--- 140 (691)
T cd01380 68 HIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSRE---VSETQVEEKVLASNPIMEA-F--- 140 (691)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCccc---ccccCHHHHHHHHHHHHHH-h---
Confidence 46766544444444 7999999999999999999961 1100000000000 011123221 112211 1
Q ss_pred cccccccccCCCCceEEEEEEEE
Q 047843 320 AVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 320 ~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---++.|+..
T Consensus 141 GNAkT~~N~NSSRFGK~~~l~f~ 163 (691)
T cd01380 141 GNAKTTRNDNSSRFGKYIQILFD 163 (691)
T ss_pred hcCCCCCCCCccccceEEEEEEC
Confidence 12568899999998888888774
No 94
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=78.59 E-value=19 Score=45.36 Aligned_cols=26 Identities=38% Similarity=0.692 Sum_probs=21.3
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCcee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
..+|..++.|.|+.+ .-+||+|||.+
T Consensus 466 ~eaI~aiL~GrDVLV--imPTGSGKSLc 491 (1195)
T PLN03137 466 REIINATMSGYDVFV--LMPTGGGKSLT 491 (1195)
T ss_pred HHHHHHHHcCCCEEE--EcCCCccHHHH
Confidence 467899999999654 55999999976
No 95
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=78.35 E-value=7.3 Score=46.36 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=49.4
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---ecccCCCCcccCCCcEEEecCHHH----HHHHHH-hhhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RSCASENGLNLPDATMHSVKSTAD----VLQLMK-LGEL 317 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~~~~~~g~~V~~lt~~~V~S~ee----vl~lL~-~G~~ 317 (648)
--||.-+......++ .|.|-||+.-|.+|||||.|.- .-...-.|-. .+.++ ..-+|+ -|+
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~---------~~i~~~il~snpiLEAFGN- 136 (671)
T cd01381 67 PHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH---------SWIEQQILEANPILEAFGN- 136 (671)
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC---------CcHHHHHHHHHHHHHHhhc-
Confidence 356665544444444 6899999999999999999961 1100000100 11221 112222 122
Q ss_pred hhcccccccccCCCCceEEEEEEEE
Q 047843 318 NRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 318 nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
+.|..|..|||---++.|+..
T Consensus 137 ----AkT~~N~NSSRFGK~~~l~F~ 157 (671)
T cd01381 137 ----AKTIRNDNSSRFGKYIDIHFN 157 (671)
T ss_pred ----cccCCCCCccccceeEEEEEC
Confidence 568899999998888888874
No 96
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=78.31 E-value=8 Score=46.22 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=49.9
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---e---cccCCCCcccCCCcEEEecCHHH----HHHHHHhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---R---SCASENGLNLPDATMHSVKSTAD----VLQLMKLG 315 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~---~~~~~~g~~V~~lt~~~V~S~ee----vl~lL~~G 315 (648)
-.||.-+......++ .|.|-||+.-|.+|||||.|.- . ... ..|.. . .+.++ ..-+|+ +
T Consensus 75 PHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s-~~~~~-----~---~~i~~~i~~snpiLE-A 144 (692)
T cd01385 75 PHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALS-QKGYA-----G---SGVEQTILSAGPVLE-A 144 (692)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhc-cCCcc-----C---CcHHHHHHHHHHHHH-H
Confidence 356765544444444 6899999999999999999961 1 111 11110 0 11222 112222 1
Q ss_pred hhhhcccccccccCCCCceEEEEEEEE
Q 047843 316 ELNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 316 ~~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
- --+.|..|..|||---.+.|+..
T Consensus 145 F---GNAkT~~N~NSSRFGK~i~l~F~ 168 (692)
T cd01385 145 F---GNAKTAHNNNSSRFGKFIQVNYR 168 (692)
T ss_pred h---hccccCCCCCccccceeEEEEEC
Confidence 1 12568899999998888888874
No 97
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=77.97 E-value=1 Score=46.51 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=19.2
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..++..++.+ .+.|+-.|.||||||.+|
T Consensus 117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 117 AEFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHHhhcccc-ceEEEEECCCccccchHH
Confidence 3444444433 455666799999999998
No 98
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=77.75 E-value=8.5 Score=45.85 Aligned_cols=84 Identities=23% Similarity=0.331 Sum_probs=49.5
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---eccc--CCCCcccCCCcEEEe-cCHHHHHHHHHhhhhhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RSCA--SENGLNLPDATMHSV-KSTADVLQLMKLGELNR 319 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~~~--~~~g~~V~~lt~~~V-~S~eevl~lL~~G~~nR 319 (648)
--||.-+......++ .|.|-||+.-|.+|||||.|.- .-.. ..++. ..+ ...-+..-+|+. -
T Consensus 68 PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-------~~i~~~il~snpiLEA-F--- 136 (677)
T cd01387 68 PHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGS-------AVITEQILEATPLLEA-F--- 136 (677)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCc-------chHHHHHHHHHHHHHH-H---
Confidence 357766554455554 7999999999999999999971 1100 01110 001 001111122221 1
Q ss_pred cccccccccCCCCceEEEEEEE
Q 047843 320 AVSSTAINNRSSRSHSVLTIHV 341 (648)
Q Consensus 320 ~~~sT~~N~~SSRSH~IftI~V 341 (648)
--+.|..|..|||---.+.|+.
T Consensus 137 GNAkT~~N~NSSRfGk~~~l~f 158 (677)
T cd01387 137 GNAKTVRNDNSSRFGKFVEIFL 158 (677)
T ss_pred hCcCCCCCCCccccceEEEEEe
Confidence 1256889999999888888876
No 99
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=77.27 E-value=1.5 Score=53.50 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=26.0
Q ss_pred hhhHHhchHHHHHHHHc--CcceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMD--GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLd--GyN~~IfAYGQTGSGKTyTM 282 (648)
-++=++.+..++..++. |-+.++|-||+||+|||.|+
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 33344445555666664 44567889999999999997
No 100
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=77.05 E-value=1.3 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=19.0
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+++.++. .++-|+-.|+||||||+||
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 3344433 4556788999999999998
No 101
>PF13245 AAA_19: Part of AAA domain
Probab=76.61 E-value=1.2 Score=38.17 Aligned_cols=26 Identities=31% Similarity=0.577 Sum_probs=17.6
Q ss_pred HHHHHcCcceEEEeecccCCCCceeee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
|..++.| +..+.--|+.|||||+|+.
T Consensus 3 v~~al~~-~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALAG-SPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHhh-CCeEEEECCCCCCHHHHHH
Confidence 4545553 3333448999999999984
No 102
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=76.24 E-value=9.9 Score=45.17 Aligned_cols=84 Identities=23% Similarity=0.305 Sum_probs=49.0
Q ss_pred hhHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---ecccCCCCcccCCCcEEEecCHHHH----HHHHHhhhhh
Q 047843 247 DDVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RSCASENGLNLPDATMHSVKSTADV----LQLMKLGELN 318 (648)
Q Consensus 247 eeVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~~~~~~g~~V~~lt~~~V~S~eev----l~lL~~G~~n 318 (648)
-.||.-+......++ .|.|-||+--|.+|||||.|+- +-....++ ... .+.++- .-+|+ +-
T Consensus 67 PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~-----~~~---~~i~~~il~snpiLE-AF-- 135 (653)
T cd01379 67 PHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGK-----ANN---RTLQEKILQVNSLVE-AF-- 135 (653)
T ss_pred CcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcC-----CCC---ccHHHHHHHHHHHHH-Hh--
Confidence 346765544444444 5899999999999999999971 11100000 000 112221 11121 11
Q ss_pred hcccccccccCCCCceEEEEEEEE
Q 047843 319 RAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 319 R~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---++.|+..
T Consensus 136 -GNAkT~~N~NSSRFGK~i~l~f~ 158 (653)
T cd01379 136 -GNARTGINDNSSRFGKYLEMKFT 158 (653)
T ss_pred -hccCcCCCCCcccceeEEEEEEC
Confidence 12568899999998888888774
No 103
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=76.09 E-value=1.4 Score=46.06 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=21.6
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++..-.+.|+-.|.||||||.||
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 3456666655667888899999999998
No 104
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=76.00 E-value=1.4 Score=48.43 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=17.2
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
-.+.|+-.|+||||||.||
T Consensus 133 ~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL 151 (358)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4688999999999999998
No 105
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=75.09 E-value=2 Score=43.70 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=17.9
Q ss_pred HcCcceEEEeecccCCCCceeee
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTMi 283 (648)
+......++-+|++|+|||+++.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445577889999999999873
No 106
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=74.91 E-value=0.84 Score=43.21 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=17.4
Q ss_pred hchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 251 KDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 251 ~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.+..+++....|-.-+++-+|..|+|||+.+
T Consensus 10 ~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 10 ERLRDLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HHHHHTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 33344444334666788999999999999986
No 107
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=74.73 E-value=1.7 Score=47.08 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=20.1
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 34566666654 45666699999999776
No 108
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=74.27 E-value=1.6 Score=43.40 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=20.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++...+-.++-.|..|+||||+|
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 3566666555545556899999999998
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=74.14 E-value=6.1 Score=44.70 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=14.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999986
No 110
>PRK10884 SH3 domain-containing protein; Provisional
Probab=73.94 E-value=15 Score=37.60 Aligned_cols=74 Identities=8% Similarity=0.119 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHhHHhhhhhhhcCCC
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHR----VVNENRKLYNMVQDLRGN 190 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~----~~~err~l~N~l~elkGn 190 (648)
.+..+...+.++.+|+..+..+..+.++...++++.+++..+++.++......... ...++..|..++.+++.+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777789999999999988888888777777777766666666554433222 223344445555555543
No 111
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=73.76 E-value=1.3 Score=43.12 Aligned_cols=29 Identities=34% Similarity=0.511 Sum_probs=21.0
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+...+-.|.+.+++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 34444444566889999999999999987
No 112
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=73.63 E-value=2 Score=45.54 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=18.9
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.|++-+|+..|++|+|||.-+
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 488999999999999999765
No 113
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=72.95 E-value=2 Score=42.35 Aligned_cols=44 Identities=27% Similarity=0.450 Sum_probs=26.2
Q ss_pred eEEEeecccCCCCceeeeecc--cCCCCcccCCCcEEEecCHHHHHHHHHhh
Q 047843 266 VCIFAYGQTGSGKTHTMIRSC--ASENGLNLPDATMHSVKSTADVLQLMKLG 315 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi~~~--~~~~g~~V~~lt~~~V~S~eevl~lL~~G 315 (648)
-.++-||++|+||||...... .-..|. + +..-+..+++..|...
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~-----~-v~f~~~~~L~~~l~~~ 93 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGY-----S-VLFITASDLLDELKQS 93 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--------EEEEEHHHHHHHHHCC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCc-----c-eeEeecCceecccccc
Confidence 458889999999999973221 111222 2 2334567777777643
No 114
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.73 E-value=2.3 Score=45.62 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=24.8
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+++..+.--..+.|+-.|.|||||+.||
T Consensus 116 Pevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 116 PEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred cHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 56777777777888999999999999998
No 115
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=71.99 E-value=2.1 Score=45.79 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=21.0
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..++..++.+ ...|+-.|.||||||.+|
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 3455666654 456778899999999997
No 116
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.64 E-value=38 Score=31.95 Aligned_cols=59 Identities=20% Similarity=0.334 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhc
Q 047843 126 KELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDL 187 (648)
Q Consensus 126 ~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~el 187 (648)
.++..|+.....++..+...+..|.+.-..+...+.++... +......|+-||++|..+
T Consensus 73 ~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r---~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 73 QEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQR---IEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence 44445555555555555555555555555555555554433 444556788999999764
No 117
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=71.49 E-value=1.4 Score=44.28 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=14.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|+||+|||.|+
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4678899999999998
No 118
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=71.44 E-value=1.5 Score=39.01 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.2
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5788999999999885
No 119
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=70.69 E-value=2.3 Score=46.16 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+..++..++.+. ..|+-.|.||||||.+|
T Consensus 149 ~~~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 149 IKEFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 345666666543 34667799999999997
No 120
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=70.47 E-value=5.6 Score=48.05 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=49.0
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee---ec---ccCCCCcccCCCcEEEecCHHHH---HHHHHhhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI---RS---CASENGLNLPDATMHSVKSTADV---LQLMKLGEL 317 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi---~~---~~~~~g~~V~~lt~~~V~S~eev---l~lL~~G~~ 317 (648)
.||.-+......++ .|.|-||+.-|.+|||||.|.- .- .....+ . .. +.+.+ .-+|+. -
T Consensus 68 HifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~---~---~~---~~e~i~~~npiLEA-F- 136 (767)
T cd01386 68 HIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVD---G---RV---SVEKVRALFTILEA-F- 136 (767)
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCC---c---cc---HHHHHHhhchHHHH-h-
Confidence 57766544444544 6999999999999999999961 11 111111 0 00 11222 122211 1
Q ss_pred hhcccccccccCCCCceEEEEEEEE
Q 047843 318 NRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 318 nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---.+.|+..
T Consensus 137 --GNAkT~rNdNSSRFGK~i~l~F~ 159 (767)
T cd01386 137 --GNVSTALNGNATRFTQILSLDFD 159 (767)
T ss_pred --hccCcCCCCCcCcceeEEEEEEC
Confidence 12568899999998888888764
No 121
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=69.99 E-value=2.6 Score=44.06 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=26.1
Q ss_pred CChhhHHhchHHHHHHHHcC--cceEEEeecccCCCCceee
Q 047843 244 ATQDDVFKDTQPLIRSVMDG--YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 244 asQeeVf~~v~plV~svLdG--yN~~IfAYGQTGSGKTyTM 282 (648)
..|+++.+.+..++.....+ ....++-||+.|+|||+..
T Consensus 7 iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 44777777666666554332 1223667999999999987
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=69.64 E-value=2.8 Score=38.89 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=18.1
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
++..++++. ..++-.|.||||||.+++
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHH
Confidence 344555542 344567899999999873
No 123
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.13 E-value=3.5 Score=45.89 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=16.2
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999998
No 124
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.46 E-value=1.9 Score=38.43 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=13.4
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999986
No 125
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=68.30 E-value=2.5 Score=45.90 Aligned_cols=27 Identities=44% Similarity=0.585 Sum_probs=19.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++..++.+. ..|+-.|.||||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4555555432 34778899999999998
No 126
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=68.07 E-value=2.8 Score=46.10 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=22.6
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..++..++.+. +.|+-.|.||||||.++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 45666666666 78889999999999987
No 127
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=67.15 E-value=3.2 Score=40.71 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=19.7
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+++..++.. ...+.-.|+||||||.+|
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 4556666654 234566799999999987
No 128
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=67.05 E-value=4.3 Score=42.89 Aligned_cols=17 Identities=47% Similarity=0.597 Sum_probs=13.9
Q ss_pred EEEeecccCCCCceeee
Q 047843 267 CIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi 283 (648)
.|.-.|+||+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999984
No 129
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=66.46 E-value=2.3 Score=43.47 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.0
Q ss_pred cceEEEeecccCCCCceeeee
Q 047843 264 YNVCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~ 284 (648)
.+..++-.|..|||||+||+.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 567777788899999999953
No 130
>PTZ00014 myosin-A; Provisional
Probab=66.26 E-value=18 Score=44.25 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=49.8
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee---eecccC-CCCcccCCCcEEEecCHHHH----HHHHHhhhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM---IRSCAS-ENGLNLPDATMHSVKSTADV----LQLMKLGELN 318 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM---i~~~~~-~~g~~V~~lt~~~V~S~eev----l~lL~~G~~n 318 (648)
-||.-+......++ .|.|-||+.-|.+|||||.+. +.-... ..|. .. .+.++. .-+|+ +--
T Consensus 165 HifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~-----~~---~~ie~~Il~sNpiLE-AFG- 234 (821)
T PTZ00014 165 HVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGN-----MD---LKIQNAIMAANPVLE-AFG- 234 (821)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCC-----Cc---ccHHHHHHHHHHHHH-Hhh-
Confidence 47776544455555 689999999999999999885 111110 0110 00 122221 11221 111
Q ss_pred hcccccccccCCCCceEEEEEEEE
Q 047843 319 RAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 319 R~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
-+.|..|..|||---.+.|+..
T Consensus 235 --NAKT~rNdNSSRFGKfi~i~F~ 256 (821)
T PTZ00014 235 --NAKTIRNNNSSRFGRFMQLQLG 256 (821)
T ss_pred --ccCcCCCCCcCcceeEEEEEEc
Confidence 2568899999998888888874
No 131
>PTZ00424 helicase 45; Provisional
Probab=66.18 E-value=3.3 Score=44.81 Aligned_cols=26 Identities=38% Similarity=0.707 Sum_probs=21.1
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.|+. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4677788999864 5689999999875
No 132
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=66.16 E-value=1.9 Score=42.55 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=12.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-++.+|+||||||.++
T Consensus 40 h~li~G~tgsGKS~~l 55 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLL 55 (205)
T ss_dssp SEEEE--TTSSHHHHH
T ss_pred eEEEEcCCCCCccHHH
Confidence 5789999999999986
No 133
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=65.95 E-value=3.5 Score=46.01 Aligned_cols=26 Identities=31% Similarity=0.575 Sum_probs=20.5
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.| +++.++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 35667788988 567789999999763
No 134
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=65.91 E-value=3.5 Score=44.99 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=26.3
Q ss_pred CChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 244 ATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 244 asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|+.+|+.+-..+.. .....+|--|..|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~---~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc---cCCcEEEEEcCCCCChhHHH
Confidence 4688999886333332 34456688999999999997
No 135
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=65.88 E-value=3.8 Score=39.78 Aligned_cols=25 Identities=36% Similarity=0.607 Sum_probs=19.2
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++.++.|.| ++..++||+|||.+.
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4566666887 567889999999874
No 136
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=64.51 E-value=3.1 Score=40.34 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=16.9
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
.|..++.--. ..+-.|+.|||||+|+.
T Consensus 9 Ai~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 9 AIQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 3555554333 34568999999999973
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=64.41 E-value=3.2 Score=43.63 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=16.8
Q ss_pred cCc-ceEEEeecccCCCCceeee
Q 047843 262 DGY-NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 262 dGy-N~~IfAYGQTGSGKTyTMi 283 (648)
.|- ...++-||++|+|||+.+-
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 453 4566669999999999873
No 138
>PRK09183 transposase/IS protein; Provisional
Probab=64.30 E-value=3.3 Score=43.23 Aligned_cols=20 Identities=45% Similarity=0.632 Sum_probs=15.8
Q ss_pred cCcceEEEeecccCCCCceeee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTMi 283 (648)
.|.| |+-+|++|+||||.+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 4655 4568999999999973
No 139
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=63.76 E-value=4.8 Score=41.10 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=16.2
Q ss_pred HHHHHcCcceEEEeecccCCCCceee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++.++ .+-.+++.|+.||||||..
T Consensus 13 ~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 13 LDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHH--hCCeEEEECCCCCcHHHHH
Confidence 44444 5568899999999999875
No 140
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=63.45 E-value=2.8 Score=39.93 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.2
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+--.|.||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 445799999999983
No 141
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=63.41 E-value=2.8 Score=38.24 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=13.4
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+.+|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999884
No 142
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=62.27 E-value=5.2 Score=47.40 Aligned_cols=31 Identities=26% Similarity=0.329 Sum_probs=21.9
Q ss_pred chHHHHHHHHc-----CcceEEEeecccCCCCceeee
Q 047843 252 DTQPLIRSVMD-----GYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 252 ~v~plV~svLd-----GyN~~IfAYGQTGSGKTyTMi 283 (648)
.+..++..+.. |.+..++.. .||||||+||+
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~ 281 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTML 281 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHH
Confidence 35667777776 345555443 89999999994
No 143
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=62.19 E-value=4.4 Score=44.75 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=21.2
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..+++|-| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 35677888987 788899999999873
No 144
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.91 E-value=4.6 Score=44.79 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=24.6
Q ss_pred ChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 245 TQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 245 sQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+......+...+-.+.-..++-||++|+|||+..
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 35666655333333334455556677999999999886
No 145
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=61.47 E-value=3 Score=45.68 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=20.6
Q ss_pred hHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...++..++.+ ...|+-.|.||||||.+|
T Consensus 151 ~~~~l~~~v~~-~~nilI~G~tGSGKTTll 179 (344)
T PRK13851 151 LEAFLHACVVG-RLTMLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCccHHHHH
Confidence 34556666542 344677899999999998
No 146
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=60.76 E-value=2.5 Score=37.89 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=13.4
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 577999999999986
No 147
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=60.68 E-value=8.7 Score=40.15 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=29.6
Q ss_pred eCCCCChhhHHhchHHHHHHHHc-C-cceEEEeecccCCCCceee
Q 047843 240 FGPTATQDDVFKDTQPLIRSVMD-G-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 240 F~~~asQeeVf~~v~plV~svLd-G-yN~~IfAYGQTGSGKTyTM 282 (648)
|++-..|+.+-...+.+++.+.. | .=..++-||+.|.|||...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHH
Confidence 44455699999888888888864 2 2345788999999998654
No 148
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.48 E-value=4.7 Score=44.45 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.|+ ++-++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 456778899885 55669999999864
No 149
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=60.38 E-value=3.5 Score=36.51 Aligned_cols=15 Identities=47% Similarity=0.454 Sum_probs=13.0
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 567899999999885
No 150
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=60.28 E-value=4.9 Score=46.38 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=24.5
Q ss_pred chHHHHHHHHcCcc--eEEEeecccCCCCceee
Q 047843 252 DTQPLIRSVMDGYN--VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 252 ~v~plV~svLdGyN--~~IfAYGQTGSGKTyTM 282 (648)
+|+..++..+.|.. .-++-+|++|||||.|+
T Consensus 30 eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 30 EVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 46777777776653 46788999999999997
No 151
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.90 E-value=5.3 Score=45.29 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=33.7
Q ss_pred EEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHH
Q 047843 267 CIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMK 313 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~ 313 (648)
.-+-||+.|+|||.- |-..+..-+..|-+|..-.|.+-.|+..||.
T Consensus 237 GYLLYGPPGTGKSS~-IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~ 282 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSF-IAAMANYLNYDIYDLELTEVKLDSDLRHLLL 282 (457)
T ss_pred cceeeCCCCCCHHHH-HHHHHhhcCCceEEeeeccccCcHHHHHHHH
Confidence 348899999999854 4433444566777787778888888877774
No 152
>PRK13764 ATPase; Provisional
Probab=59.32 E-value=4.5 Score=47.55 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.7
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-.|+||||||+++
T Consensus 257 ~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFA 274 (602)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445889999999999998
No 153
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.94 E-value=87 Score=33.81 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=32.3
Q ss_pred ceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHhhh
Q 047843 265 NVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGE 316 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~ 316 (648)
--.++-||+.|+|||... +.. .+-.+++.+.|.-.+=+..++-.|.
T Consensus 181 PKGvlLygppgtGktLla-raV-----ahht~c~firvsgselvqk~igegs 226 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLA-RAV-----AHHTDCTFIRVSGSELVQKYIGEGS 226 (404)
T ss_pred CcceEEecCCCCchhHHH-HHH-----HhhcceEEEEechHHHHHHHhhhhH
Confidence 345889999999998652 111 1234677888888888888887764
No 154
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=58.86 E-value=4 Score=40.44 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=14.6
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
.-..||..||.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3467889999999999886
No 155
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=58.62 E-value=4.1 Score=40.01 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.9
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999985
No 156
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.55 E-value=5.8 Score=44.42 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=21.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..+++|.| |++..+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45777889988 577789999999873
No 157
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=58.49 E-value=3.2 Score=38.07 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=13.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999886
No 158
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=58.42 E-value=5.9 Score=42.30 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=21.4
Q ss_pred hHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.+++..++.+. ..|.-.|.||||||..|
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 456777777654 34555699999999986
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=58.32 E-value=7.8 Score=47.32 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=30.0
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcc------eEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYN------VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN------~~IfAYGQTGSGKTyTM 282 (648)
-+.+|+| |+..-..+...|..+..|.. +.++-+|+||+|||++.
T Consensus 566 l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 566 LHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred hCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 4556775 55555555555555554443 57788899999999986
No 160
>PRK04195 replication factor C large subunit; Provisional
Probab=57.95 E-value=7.2 Score=44.19 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=26.3
Q ss_pred hhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
|+++-+.+..++.....|. .-.++-||++|+|||++.
T Consensus 19 ~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 19 NEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 4444445566666666665 456788999999999886
No 161
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=57.88 E-value=80 Score=35.48 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 120 LLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMS 164 (648)
Q Consensus 120 ~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~ 164 (648)
+++.--+||++++.....+...++.|+.+++.++.-+.+.++|-.
T Consensus 261 ~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEER 305 (455)
T KOG3850|consen 261 ALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEER 305 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777899999999999999999999999998887777666643
No 162
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=57.73 E-value=2.5e+02 Score=33.46 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=18.0
Q ss_pred ceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCc
Q 047843 333 SHSVLTIHVHGKDTSGSILRSCLHLVDLAGSE 364 (648)
Q Consensus 333 SH~IftI~V~~~~~~~~~~~SkL~LVDLAGSE 364 (648)
|.-++.++|.+... -++.||||.|-=
T Consensus 398 SnEvIsltVKGPgL------qRMVLVDLPGvI 423 (980)
T KOG0447|consen 398 SPETISLNVKGPGL------QRMVLVDLPGVI 423 (980)
T ss_pred ccceEEEeecCCCc------ceeEEecCCchh
Confidence 55677777765432 368899999953
No 163
>PRK06547 hypothetical protein; Provisional
Probab=55.98 E-value=8.9 Score=37.70 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=19.1
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++..+..+.---|.-+|.+|||||+.-
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3445555555555666799999999874
No 164
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=55.91 E-value=6.4 Score=44.24 Aligned_cols=80 Identities=23% Similarity=0.374 Sum_probs=49.7
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHh
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKL 314 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~ 314 (648)
+||.|+| |+.+...-.++=.-+-.|.=...+-||+.|+|||..- +......+..+.-+ .-.+.+..|+..++..
T Consensus 22 ~lde~vG----Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA-~liA~~~~~~f~~~-sAv~~gvkdlr~i~e~ 95 (436)
T COG2256 22 SLDEVVG----QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLA-RLIAGTTNAAFEAL-SAVTSGVKDLREIIEE 95 (436)
T ss_pred CHHHhcC----hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHH-HHHHHhhCCceEEe-ccccccHHHHHHHHHH
Confidence 4666665 7777766556555555677788889999999999653 11111111111111 1234578889999988
Q ss_pred hhhhhc
Q 047843 315 GELNRA 320 (648)
Q Consensus 315 G~~nR~ 320 (648)
+.++|.
T Consensus 96 a~~~~~ 101 (436)
T COG2256 96 ARKNRL 101 (436)
T ss_pred HHHHHh
Confidence 877664
No 165
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=55.87 E-value=8.1 Score=42.17 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=17.1
Q ss_pred HHcCcceEEEeecccCCCCceee
Q 047843 260 VMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 260 vLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+..+.---.+-||+.|+|||.|.
T Consensus 52 ~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 52 LLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HhhcCCceEEeeCCCCCcHhHHH
Confidence 33334445678999999999997
No 166
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=55.09 E-value=7.3 Score=41.67 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=25.0
Q ss_pred ChhhHHhchHHHHHHHHc--CcceEEEeecccCCCCceeee
Q 047843 245 TQDDVFKDTQPLIRSVMD--GYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 245 sQeeVf~~v~plV~svLd--GyN~~IfAYGQTGSGKTyTMi 283 (648)
.|+++-+.+..++..... +....++-||++|+|||+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 455655555555554432 222356779999999999873
No 167
>PHA00729 NTP-binding motif containing protein
Probab=54.87 E-value=9.3 Score=39.70 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=34.8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceeeeecccCCCCccc----------CCCcEEEecCHHHHHHHHHhh
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCASENGLNL----------PDATMHSVKSTADVLQLMKLG 315 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V----------~~lt~~~V~S~eevl~lL~~G 315 (648)
.++..+..|-=..|+-+|.+|+||||........ -+..+ .......+.+.++++..|...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~-l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a 76 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARD-VFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDA 76 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHH-HHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHH
Confidence 3455555443357999999999999886321110 00111 112235566778888877643
No 168
>PRK06851 hypothetical protein; Provisional
Probab=54.42 E-value=2.2e+02 Score=31.78 Aligned_cols=27 Identities=26% Similarity=0.552 Sum_probs=24.4
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+++++++.+-.++--|.+|+|||..|
T Consensus 205 ~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 205 FVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 567778999999999999999999998
No 169
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=54.33 E-value=8.9 Score=46.58 Aligned_cols=26 Identities=46% Similarity=0.539 Sum_probs=22.1
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+.+|.|+-|.| +||||||-+-
T Consensus 29 ~a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 29 YAIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHHhCCCceEEEc--CCCCChHHHH
Confidence 3567788999999988 9999999774
No 170
>PLN03025 replication factor C subunit; Provisional
Probab=54.10 E-value=6.8 Score=41.78 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=24.9
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
+||.|.+ |+++.+.++.++. .|.-..++-||+.|+|||++..
T Consensus 11 ~l~~~~g----~~~~~~~L~~~~~---~~~~~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 11 KLDDIVG----NEDAVSRLQVIAR---DGNMPNLILSGPPGTGKTTSIL 52 (319)
T ss_pred CHHHhcC----cHHHHHHHHHHHh---cCCCceEEEECCCCCCHHHHHH
Confidence 4566554 4555444333322 2332335569999999999973
No 171
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=53.39 E-value=5.1 Score=41.43 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.5
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45677999999999986
No 172
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=53.39 E-value=39 Score=33.97 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=22.4
Q ss_pred ccCCCCcccCCCCCCccccchhhhhhhhccccHHHHHHHHHHHH
Q 047843 83 GSRLQTHVTSSPEDLPVLGISQCCRACLMKGNCKHRQLLQMQEK 126 (648)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 126 (648)
|+....++-++|. .+.++..|--.+|..+..--++++.|..
T Consensus 82 g~~~~~~~~~~~~---sv~~L~~~T~~Elq~mr~~ln~FR~qm~ 122 (179)
T PF14723_consen 82 GSDLNADPYSTQR---SVRELYSCTVQELQQMRRSLNSFREQMM 122 (179)
T ss_pred cccccccccccch---hHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555555544443 4566667777777766444444444443
No 173
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=53.17 E-value=6.2 Score=41.06 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=16.4
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.|...-++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999887
No 174
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.03 E-value=8.5 Score=43.37 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=20.3
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.|.++ ++..+||||||.+.
T Consensus 18 ~ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 357778899975 55579999999764
No 175
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.72 E-value=5.4 Score=44.27 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.3
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
..|.-+|+||+|||+|+.
T Consensus 138 ~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 466679999999999983
No 176
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=52.56 E-value=13 Score=42.00 Aligned_cols=18 Identities=44% Similarity=0.519 Sum_probs=15.8
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
-..|+-+|.+|+|||+|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 457888999999999997
No 177
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=52.29 E-value=1.2e+02 Score=30.66 Aligned_cols=66 Identities=14% Similarity=0.317 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh----------------------hhhhHH
Q 047843 121 LQMQEKELVDLKDLLSRTKKEFKDLEL-----QLHSDLEDLGNQVQEMSSAA----------------------LGYHRV 173 (648)
Q Consensus 121 ~~~q~~~l~~Lk~~~~~~~~e~~~l~~-----~~~~~~~~~~~~~~e~~~~~----------------------~~~~~~ 173 (648)
+...++.++.|+...+...+|+++|.+ ++|+.++++...+.+++... ..|+..
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~ 167 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKE 167 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 334455677777777888888888875 44555555555555444221 134445
Q ss_pred HHHhHHhhhhhhh
Q 047843 174 VNENRKLYNMVQD 186 (648)
Q Consensus 174 ~~err~l~N~l~e 186 (648)
-..||+.||.|-+
T Consensus 168 wrk~krmf~ei~d 180 (201)
T KOG4603|consen 168 WRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 5667778888754
No 178
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.20 E-value=1.2e+02 Score=29.89 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHS 151 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~ 151 (648)
.++.+....+++.++.........++..++..+..
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~ 120 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQE 120 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444556666666666666666655554443
No 179
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=51.26 E-value=5 Score=45.57 Aligned_cols=46 Identities=20% Similarity=0.381 Sum_probs=28.4
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHH-----c--C--cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVM-----D--G--YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svL-----d--G--yN~~IfAYGQTGSGKTyTM 282 (648)
..+||.|.+.+...+++. .++..+- . | ..-.|+-||++|+|||+..
T Consensus 51 ~~~~~di~g~~~~k~~l~----~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELM----EIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCHHHhCCHHHHHHHHH----HHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 467888877544444433 3333211 1 2 2235888999999999996
No 180
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=51.04 E-value=11 Score=42.78 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.8
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
..|+-.|+||+|||+|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 567889999999999984
No 181
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=50.59 E-value=8.5 Score=48.44 Aligned_cols=28 Identities=32% Similarity=0.544 Sum_probs=19.4
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
.++..+-+|...+++. .+||||||+||+
T Consensus 424 ai~~a~~~g~r~~Ll~-maTGSGKT~tai 451 (1123)
T PRK11448 424 AVEKAIVEGQREILLA-MATGTGKTRTAI 451 (1123)
T ss_pred HHHHHHHhccCCeEEE-eCCCCCHHHHHH
Confidence 3444445676655444 899999999984
No 182
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.45 E-value=8.7 Score=43.19 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=20.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 46778899998765 559999999764
No 183
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.43 E-value=11 Score=42.44 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=14.7
Q ss_pred EEEeecccCCCCceeeee
Q 047843 267 CIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~ 284 (648)
+|+-.|+||+|||+|+..
T Consensus 223 ~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAK 240 (424)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566669999999999843
No 184
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=49.90 E-value=9 Score=46.05 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=26.5
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+||.+++ |+.+-.....+...+-.|--..++-||++|+|||++.
T Consensus 26 tldd~vG----Qe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 26 TLEEFVG----QDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cHHHhcC----cHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHH
Confidence 4565554 5555433223323333444457788999999999886
No 185
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=49.70 E-value=7.1 Score=42.94 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=14.3
Q ss_pred ceEEEeecccCCCCcee
Q 047843 265 NVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyT 281 (648)
.+-|+-.|+||||||+-
T Consensus 97 KSNILLiGPTGsGKTlL 113 (408)
T COG1219 97 KSNILLIGPTGSGKTLL 113 (408)
T ss_pred eccEEEECCCCCcHHHH
Confidence 45688899999999975
No 186
>PRK10536 hypothetical protein; Provisional
Probab=49.64 E-value=9.8 Score=40.39 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=26.7
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|.|-.|-+-+..|..... .+.+ +.-|+..|++||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~-------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK-------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH-------HHhc--CCeEEEECCCCCCHHHHH
Confidence 3555555555555554333 2333 348899999999999986
No 187
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=49.62 E-value=15 Score=40.95 Aligned_cols=27 Identities=33% Similarity=0.701 Sum_probs=22.0
Q ss_pred HHHHHHHcCcc---eEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYN---VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN---~~IfAYGQTGSGKTyTM 282 (648)
|.+...+.|.. -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 67788888874 56765 99999999887
No 188
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=49.40 E-value=9.5 Score=45.00 Aligned_cols=26 Identities=35% Similarity=0.620 Sum_probs=20.4
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.|.+ |++.+|||||||.+.
T Consensus 35 ~ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 35 ECIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 35677788887 577789999999764
No 189
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.37 E-value=8.6 Score=40.58 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.6
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
-+++..+.. +--++-+|++|+|||-++
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 455666644 556788999999999887
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=49.26 E-value=6.7 Score=42.12 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=27.1
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHHc-------CcceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMD-------GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svLd-------GyN~~IfAYGQTGSGKTyTM 282 (648)
..-+||.|.| |++-=.. +.+|-..|+ =---.|+-||++|+|||++-
T Consensus 116 ~~it~ddViG----qEeAK~k-crli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~A 168 (368)
T COG1223 116 SDITLDDVIG----QEEAKRK-CRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ccccHhhhhc----hHHHHHH-HHHHHHHhhChHHhcccCcceeEEECCCCccHHHHH
Confidence 3456777766 4433222 234444432 22346788999999999874
No 191
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.02 E-value=22 Score=39.59 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=20.7
Q ss_pred HHHcCcceEEEeecccCCCCceee
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++-.|+.-+++..|+.|+|||.-+
T Consensus 15 ~~KkG~~ftlmvvG~sGlGKsTfi 38 (366)
T KOG2655|consen 15 SVKKGFDFTLMVVGESGLGKSTFI 38 (366)
T ss_pred HHhcCCceEEEEecCCCccHHHHH
Confidence 345899999999999999998664
No 192
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=49.02 E-value=29 Score=46.04 Aligned_cols=85 Identities=25% Similarity=0.327 Sum_probs=51.1
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee---------eecccCCCCcccCCCcEEEecCHHHHHHHHHhhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM---------IRSCASENGLNLPDATMHSVKSTADVLQLMKLGEL 317 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM---------i~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~ 317 (648)
-||........+.| ++-|-+|+.-|-+|+|||-.- ++.+. +..+++- +.+.+.+.+. ...
T Consensus 150 HIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~---~~~~~~~----~~le~qi~q~---npv 219 (1930)
T KOG0161|consen 150 HIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYLASVASSS---TKKVKIE----GTLEDQILQA---NPV 219 (1930)
T ss_pred hHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhcc---ccCCCCC----CChHHHHHHh---Cch
Confidence 35555444555555 788999999999999999653 22221 1111111 3333433321 111
Q ss_pred hhc--ccccccccCCCCceEEEEEEEE
Q 047843 318 NRA--VSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 318 nR~--~~sT~~N~~SSRSH~IftI~V~ 342 (648)
..+ -+.|..|..|||.|-+++|+..
T Consensus 220 LeaFGNa~tvrn~NssRFgkfirI~F~ 246 (1930)
T KOG0161|consen 220 LEAFGNAKTVRNDNSSRFGKFIRIHFD 246 (1930)
T ss_pred HHHhcChhhhcCCCCcccceeEEEecC
Confidence 111 1357789999999999999885
No 193
>PF05729 NACHT: NACHT domain
Probab=48.93 E-value=7.1 Score=35.91 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=14.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.++-+|..|+|||..|
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 3678999999999988
No 194
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.71 E-value=11 Score=41.26 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=25.7
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcC-cceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdG-yN~~IfAYGQTGSGKTyTM 282 (648)
+||.|.| |+.+-+.. ...+-.| ..-.++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~~l---~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVTAI---SNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHHHH---HHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 4666654 45544432 2223333 3456789999999999886
No 195
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=48.16 E-value=10 Score=44.14 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=20.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..+++|.|+ ++.++||||||.+.
T Consensus 38 ~~ip~~l~G~Dv--i~~ApTGSGKTlaf 63 (572)
T PRK04537 38 LTLPVALPGGDV--AGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHHhCCCCE--EEEcCCCCcHHHHH
Confidence 457778999995 55789999999763
No 196
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=48.13 E-value=15 Score=44.72 Aligned_cols=18 Identities=44% Similarity=0.704 Sum_probs=15.4
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
|-.++-+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556778899999999887
No 197
>PHA02653 RNA helicase NPH-II; Provisional
Probab=48.08 E-value=13 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=18.5
Q ss_pred HHHHHHcCcceEEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
++..+++|.++ +..|+||||||..
T Consensus 172 il~~i~~gkdv--Iv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKPV--VLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCCE--EEECCCCCCchhH
Confidence 45566677654 7899999999965
No 198
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=47.66 E-value=6.4 Score=43.01 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 345999999999876
No 199
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=47.55 E-value=6.6 Score=35.71 Aligned_cols=15 Identities=53% Similarity=0.864 Sum_probs=12.9
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
++-||.+|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 456899999999986
No 200
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=47.43 E-value=13 Score=42.56 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=20.2
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.|+ ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 457778899874 66779999999663
No 201
>PRK14974 cell division protein FtsY; Provisional
Probab=47.25 E-value=16 Score=40.09 Aligned_cols=18 Identities=44% Similarity=0.628 Sum_probs=16.1
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|.-.|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467889999999999997
No 202
>PRK00131 aroK shikimate kinase; Reviewed
Probab=47.20 E-value=8.7 Score=36.01 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.9
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
-+|+-+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 47899999999999874
No 203
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.07 E-value=8.6 Score=44.00 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=19.5
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
-|..+.+|.+. +|++|||||||+.-
T Consensus 104 sip~i~~Grdl--~acAqTGsGKT~aF 128 (482)
T KOG0335|consen 104 SIPIISGGRDL--MACAQTGSGKTAAF 128 (482)
T ss_pred ccceeecCCce--EEEccCCCcchHHH
Confidence 35555667765 89999999999885
No 204
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=46.86 E-value=11 Score=37.15 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=19.1
Q ss_pred HHHHcCc---ceEEEeecccCCCCceee
Q 047843 258 RSVMDGY---NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 258 ~svLdGy---N~~IfAYGQTGSGKTyTM 282 (648)
|.++.|- ...+.-||.+|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4455554 677889999999999775
No 205
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=46.69 E-value=17 Score=38.43 Aligned_cols=18 Identities=39% Similarity=0.516 Sum_probs=14.3
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
.+|.-.|++|+|||.|..
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999999973
No 206
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=46.48 E-value=7.2 Score=43.65 Aligned_cols=17 Identities=35% Similarity=0.700 Sum_probs=14.8
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.-|+-||.+||||||+.
T Consensus 31 S~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV 47 (438)
T ss_pred eeEEEeccCCCchhHHH
Confidence 34689999999999997
No 207
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=46.39 E-value=12 Score=42.58 Aligned_cols=36 Identities=8% Similarity=0.191 Sum_probs=23.2
Q ss_pred cCCCcceeEEEecCCCcCCHHHHHHHHHHH--HHhcccccCc
Q 047843 418 LGGRAKTLMFAHVSPEVDFFGETVSTLKFA--QRVSTVELGA 457 (648)
Q Consensus 418 LGGNSkT~mI~~ISPs~~~~eETLsTLrFA--~Rak~I~~~~ 457 (648)
+.-.....+|++.+....+ +..|.+| .|..-|...+
T Consensus 320 f~iP~Nl~IIgTMNt~Drs----~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRS----LAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred ccCCCCeEEEEecCccccc----hhhccHHHHhhhheEEecC
Confidence 4456789999999998754 4456666 3444444443
No 208
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.06 E-value=1e+02 Score=34.87 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMS 164 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~ 164 (648)
....+..-.++|.+++.....+..+++.|+.+++.++..+...++|-.
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr 257 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEER 257 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444566667788899999999999999999888877776666665544
No 209
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=45.53 E-value=14 Score=44.01 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=27.3
Q ss_pred eCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 240 F~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|.+...|+.+...+ ....-.++..-++..|+||||||.+.
T Consensus 260 f~lt~~Q~~ai~~I---~~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 260 FELTGAQKRVVAEI---LADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCCHHHHHHHHHH---HHhhhccCCceEEEECCCCCcHHHHH
Confidence 34666777776654 22333455567899999999999865
No 210
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=45.32 E-value=14 Score=39.75 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.3
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
.-+|+-.|.||||||++|
T Consensus 143 ~~siii~G~t~sGKTt~l 160 (312)
T COG0630 143 RKSIIICGGTASGKTTLL 160 (312)
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 445678899999999998
No 211
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.20 E-value=17 Score=39.31 Aligned_cols=17 Identities=41% Similarity=0.653 Sum_probs=14.4
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|.-.|++|+|||.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666799999999997
No 212
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=44.55 E-value=13 Score=38.91 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.1
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
.-+.+|.-||+-|||||+.|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999998
No 213
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=44.45 E-value=16 Score=44.17 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=24.8
Q ss_pred hhhHHhchHHHHHHHHcCc------ceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGY------NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGy------N~~IfAYGQTGSGKTyTM 282 (648)
|++.-+.+...|.....|. .+.++-+|+||+|||++.
T Consensus 463 Q~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHH
Confidence 4444444444445444454 367899999999999986
No 214
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=44.24 E-value=20 Score=39.84 Aligned_cols=43 Identities=21% Similarity=0.511 Sum_probs=27.4
Q ss_pred cc-eeeCCCCChhhHHhchHHHHHHHHcC---cceEEEeecccCCCCceee
Q 047843 236 FN-HVFGPTATQDDVFKDTQPLIRSVMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 236 FD-~VF~~~asQeeVf~~v~plV~svLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
|| .||| +++.-+.+...+.....| -+--+.-.|++|||||...
T Consensus 49 F~~~~~G----~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 49 FDHDFFG----MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred cchhccC----cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 55 6787 444444433344444444 3466788999999999765
No 215
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=44.13 E-value=9.4 Score=35.47 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=12.8
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577899999999874
No 216
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=44.13 E-value=14 Score=42.62 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=27.9
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
-+||.+++.+ ..- +.+...++.+....|+-||++|+|||+.-
T Consensus 62 ~~f~~iiGqs----~~i---~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQE----EGI---KALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcH----HHH---HHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 3577777643 222 33333455666677888999999999874
No 217
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=43.98 E-value=8.6 Score=39.66 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=15.7
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...++-||..|+|||++.
T Consensus 12 ~~~~liyG~~G~GKtt~a 29 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTI 29 (220)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999986
No 218
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=43.41 E-value=11 Score=44.11 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=15.1
Q ss_pred EEEeecccCCCCceeee
Q 047843 267 CIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi 283 (648)
-||..|+|+|||||--+
T Consensus 193 Ii~H~GPTNSGKTy~AL 209 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL 209 (700)
T ss_pred EEEEeCCCCCchhHHHH
Confidence 38999999999999873
No 219
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=43.26 E-value=13 Score=40.64 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=14.1
Q ss_pred EEeecccCCCCceeee
Q 047843 268 IFAYGQTGSGKTHTMI 283 (648)
Q Consensus 268 IfAYGQTGSGKTyTMi 283 (648)
++.+|.||||||++++
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5788999999999975
No 220
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=43.08 E-value=17 Score=43.59 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=23.6
Q ss_pred hhhHHhchHHHHHHHHcCc------ceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGY------NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGy------N~~IfAYGQTGSGKTyTM 282 (648)
|+++-+.+...|.....|+ .+.++-+|+||+|||++.
T Consensus 459 Q~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELA 501 (731)
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHH
Confidence 4444444444444444454 346788999999999885
No 221
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=43.08 E-value=16 Score=42.71 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.5
Q ss_pred HHHHHHHcCcceEEEeecccCCCCcee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
..|..++.|.|+.+ .++||||||.+
T Consensus 32 ~ai~~il~g~dvlv--~apTGsGKTl~ 56 (607)
T PRK11057 32 EIIDAVLSGRDCLV--VMPTGGGKSLC 56 (607)
T ss_pred HHHHHHHcCCCEEE--EcCCCchHHHH
Confidence 35677789988755 46999999975
No 222
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=43.07 E-value=31 Score=40.89 Aligned_cols=44 Identities=20% Similarity=0.400 Sum_probs=27.8
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.|+.+++.+..-..+.+.+ .. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~----~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV----EM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHH----HH-HhCCCCCEEEECCCCcCHHHHH
Confidence 35666666544333333332 32 2356778999999999999864
No 223
>PHA02244 ATPase-like protein
Probab=43.01 E-value=21 Score=39.99 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=16.7
Q ss_pred HHHHcCcceEEEeecccCCCCceee
Q 047843 258 RSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 258 ~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+-.|.+++| +|+||+|||+..
T Consensus 114 r~l~~~~PVLL--~GppGtGKTtLA 136 (383)
T PHA02244 114 KIVNANIPVFL--KGGAGSGKNHIA 136 (383)
T ss_pred HHHhcCCCEEE--ECCCCCCHHHHH
Confidence 33345666554 899999999875
No 224
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=42.98 E-value=10 Score=36.33 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=13.1
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-+|..|||||+.-
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999873
No 225
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.93 E-value=16 Score=36.80 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=21.4
Q ss_pred HHHHHHHcCc---ceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGY---NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGy---N~~IfAYGQTGSGKTyTM 282 (648)
+-++.++.|- ..+++-+|.+|||||+-.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 4467777643 677788899999999765
No 226
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=42.69 E-value=18 Score=39.47 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.7
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++.+.+|-+..+|..++||||||...
T Consensus 5 ~~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 5 TFEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 345667788777888899999999874
No 227
>PRK06696 uridine kinase; Validated
Probab=42.64 E-value=22 Score=35.90 Aligned_cols=21 Identities=29% Similarity=0.129 Sum_probs=16.7
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.+...-|.-.|.+|||||+..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 455667778899999999873
No 228
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=42.58 E-value=8.9 Score=42.61 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.5
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
--++.+|.||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 35688999999999886
No 229
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=42.39 E-value=17 Score=37.77 Aligned_cols=26 Identities=35% Similarity=0.540 Sum_probs=18.4
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++..+..|.++. -+|.+|+|||...
T Consensus 13 ~~l~~l~~g~~vL--L~G~~GtGKT~lA 38 (262)
T TIGR02640 13 RALRYLKSGYPVH--LRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHhcCCeEE--EEcCCCCCHHHHH
Confidence 3444455666554 5899999999875
No 230
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.38 E-value=11 Score=44.75 Aligned_cols=37 Identities=14% Similarity=0.338 Sum_probs=23.2
Q ss_pred hhhHHhchHHHHHHHHcCc--ceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGy--N~~IfAYGQTGSGKTyTM 282 (648)
|......+..++..+.-+. .-.++-||++|+|||.++
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTI 127 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHH
Confidence 4444444444555444332 124778999999999987
No 231
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=42.08 E-value=9.9 Score=36.17 Aligned_cols=17 Identities=35% Similarity=0.557 Sum_probs=14.0
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34567899999999887
No 232
>PRK07261 topology modulation protein; Provisional
Probab=41.92 E-value=11 Score=36.68 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=13.0
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999875
No 233
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=41.87 E-value=2.3e+02 Score=27.38 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=25.6
Q ss_pred HhhhhhHHHHHhHHhhhhhhhcCCCeEEEEEe
Q 047843 166 AALGYHRVVNENRKLYNMVQDLRGNIRVYCRV 197 (648)
Q Consensus 166 ~~~~~~~~~~err~l~N~l~elkGnIRV~vRV 197 (648)
.+..||++-++||.+..+|....+...|.-|.
T Consensus 84 EsKAyhk~ndeRr~ylaEi~~~s~~~~~~k~q 115 (129)
T PF15372_consen 84 ESKAYHKANDERRQYLAEISQTSALHQVSKRQ 115 (129)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhHhhhccc
Confidence 34569999999999999999988776665443
No 234
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=41.58 E-value=17 Score=42.24 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=21.0
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+|..+++|.|+ ++..+||+|||.+.
T Consensus 19 ~~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 19 EEIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 3467888999985 55569999999874
No 235
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=41.57 E-value=13 Score=42.64 Aligned_cols=45 Identities=20% Similarity=0.303 Sum_probs=30.8
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+.||.+++.+..=.++.+. +..+. ..+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~----~~~~a-~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ----ARVVA-RSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH----HHHHh-CcCCCEEEECCCCccHHHHH
Confidence 46788888765433334333 33332 56788999999999999875
No 236
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=41.44 E-value=15 Score=40.08 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=22.6
Q ss_pred hHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...++..++.+. ..|+-.|.||||||.+|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 456667777654 67888899999999886
No 237
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=41.22 E-value=10 Score=43.59 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.5
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
..|.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467788999999999984
No 238
>PRK04328 hypothetical protein; Provisional
Probab=40.99 E-value=19 Score=37.27 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=21.7
Q ss_pred HHHHHHHcC---cceEEEeecccCCCCcee
Q 047843 255 PLIRSVMDG---YNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 255 plV~svLdG---yN~~IfAYGQTGSGKTyT 281 (648)
+-++.++.| ....++-+|.+|||||.-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 347888876 478888999999999854
No 239
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=40.79 E-value=12 Score=36.09 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.0
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-+|..|||||+..
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999764
No 240
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=40.77 E-value=2.1e+02 Score=23.82 Aligned_cols=32 Identities=6% Similarity=0.226 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 121 LQMQEKELVDLKDLLSRTKKEFKDLELQLHSD 152 (648)
Q Consensus 121 ~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~ 152 (648)
+++...+++.|......+..++..++...+..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777777777776655543
No 241
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=40.71 E-value=18 Score=36.07 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=21.9
Q ss_pred HHHHHHHcC---cceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
+-+|.++.| ...++.-+|++|||||.-+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 346777775 3567788999999999876
No 242
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=40.57 E-value=14 Score=43.91 Aligned_cols=45 Identities=36% Similarity=0.550 Sum_probs=31.0
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|....=|.|.-.|..-+.. ++..+-+|...- ..+|-||||||+||
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~ 46 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTM 46 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHH
Confidence 4444557788888876665 455555664222 36899999999998
No 243
>PHA01747 putative ATP-dependent protease
Probab=40.43 E-value=17 Score=40.77 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=26.3
Q ss_pred hHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.-|+|++...+-|.-++=.|+-|+||||+-
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 468888777888999999999999999995
No 244
>PRK05580 primosome assembly protein PriA; Validated
Probab=40.31 E-value=17 Score=43.30 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=23.7
Q ss_pred eCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 240 F~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.....|+++++.+.. .. ++ ..++.+|.||||||.+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~---~~--~~-~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 143 PTLNPEQAAAVEAIRA---AA--GF-SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CCCCHHHHHHHHHHHh---cc--CC-CcEEEECCCCChHHHHH
Confidence 3445567766655421 11 33 34789999999999775
No 245
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=40.12 E-value=12 Score=34.00 Aligned_cols=15 Identities=40% Similarity=0.539 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|++|||||..-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999863
No 246
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=40.07 E-value=10 Score=45.41 Aligned_cols=18 Identities=39% Similarity=0.551 Sum_probs=14.8
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
|..++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 334567899999999998
No 247
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=39.99 E-value=21 Score=43.48 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=23.5
Q ss_pred hHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 248 DVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 248 eVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
-||.....+++.+-++- .|+..|+||||||..+
T Consensus 5 Pi~~~~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 5 PVAAVLPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred CHHHHHHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 35555566666665544 3667999999999886
No 248
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=39.97 E-value=16 Score=43.20 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=18.5
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
.|..++..- ..++-.|++|+|||||+.
T Consensus 165 Av~~~l~~~-~~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 165 AVSFALSSK-DLFLIHGPPGTGKTRTLV 191 (637)
T ss_pred HHHHHhcCC-CeEEEEcCCCCCHHHHHH
Confidence 344444432 235689999999999983
No 249
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=39.74 E-value=22 Score=43.51 Aligned_cols=41 Identities=32% Similarity=0.490 Sum_probs=28.1
Q ss_pred eeeCCCCChhhHHhchHHHHHHHHcCcc------eEEEeecccCCCCceee
Q 047843 238 HVFGPTATQDDVFKDTQPLIRSVMDGYN------VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 238 ~VF~~~asQeeVf~~v~plV~svLdGyN------~~IfAYGQTGSGKTyTM 282 (648)
+|+| |++.-+.+...|..+..|.+ +.++-+|+||+|||++.
T Consensus 567 ~v~G----Q~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 567 RVIG----QDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEcC----hHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 4555 55555555555555555654 56889999999999985
No 250
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=39.51 E-value=10 Score=35.80 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=11.3
Q ss_pred EEeecccCCCCcee
Q 047843 268 IFAYGQTGSGKTHT 281 (648)
Q Consensus 268 IfAYGQTGSGKTyT 281 (648)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35579999999866
No 251
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=39.40 E-value=10 Score=41.83 Aligned_cols=45 Identities=33% Similarity=0.567 Sum_probs=31.2
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...|.|+.|-+ |+++= .-++..+.+-.-+.|+-+|.+||||||.+
T Consensus 11 ~~~~pf~~ivG----q~~~k---~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 11 RPVFPFTAIVG----QEEMK---LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCCHHHHhC----hHHHH---HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 34788988887 44332 34555555544456889999999999997
No 252
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=39.38 E-value=19 Score=46.03 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=19.7
Q ss_pred HHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 249 VFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 249 Vf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
||..-..++. ++.+.. .|+-.|+||||||..+
T Consensus 75 i~~~r~~Il~-ai~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 75 VSQKKQDILE-AIRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHHHHHHH-HHHhCC-eEEEECCCCCCHHHHH
Confidence 4433333333 344544 4667799999999865
No 253
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.34 E-value=20 Score=40.95 Aligned_cols=41 Identities=29% Similarity=0.409 Sum_probs=25.4
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcc-eEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYN-VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN-~~IfAYGQTGSGKTyTM 282 (648)
+||.|.+ |+.+- ..+-..+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divG----q~~i~---~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHVK---KLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHHH---HHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777766 44442 222233334432 45788999999999886
No 254
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=39.33 E-value=12 Score=34.49 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+|+-+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999874
No 255
>PTZ00110 helicase; Provisional
Probab=39.25 E-value=16 Score=42.27 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=19.8
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..++.|.|+ ++.++||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 46678899876 45679999999873
No 256
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.10 E-value=70 Score=35.93 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=31.6
Q ss_pred eEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHhhh
Q 047843 266 VCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGE 316 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~ 316 (648)
-.|+-||+.|+|||--- +-+. +=.+++.+.|...+=+..++-.|.
T Consensus 186 KGVLLYGPPGTGKTLLA-kAVA-----~~T~AtFIrvvgSElVqKYiGEGa 230 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA-KAVA-----NQTDATFIRVVGSELVQKYIGEGA 230 (406)
T ss_pred CceEeeCCCCCcHHHHH-HHHH-----hccCceEEEeccHHHHHHHhccch
Confidence 35899999999998542 1111 224678888888888888876664
No 257
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.02 E-value=1.3e+02 Score=30.90 Aligned_cols=22 Identities=9% Similarity=0.259 Sum_probs=12.3
Q ss_pred ccchhhhhhcccCCchhHHHHH
Q 047843 16 NLDENLLASFHNRSLDSFKLLT 37 (648)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~ 37 (648)
-|.+++...+|+|.+...+++.
T Consensus 27 YIsD~l~v~lRsGPg~~y~Iv~ 48 (206)
T PRK10884 27 YVSDELNTYVRSGPGDQYRIVG 48 (206)
T ss_pred EEEcceeEEEEcCCCCCCceEE
Confidence 4555555566666665554443
No 258
>PRK08118 topology modulation protein; Reviewed
Probab=38.77 E-value=13 Score=36.09 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|+.|||||+..
T Consensus 4 I~I~G~~GsGKSTla 18 (167)
T PRK08118 4 IILIGSGGSGKSTLA 18 (167)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999643
No 259
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=38.75 E-value=39 Score=38.60 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=18.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++.-+=.++|.+ -.|++|+||||.-
T Consensus 201 rl~~fve~~~Nli--~lGp~GTGKThla 226 (449)
T TIGR02688 201 RLLPLVEPNYNLI--ELGPKGTGKSYIY 226 (449)
T ss_pred hhHHHHhcCCcEE--EECCCCCCHHHHH
Confidence 3334444777775 4699999999886
No 260
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=38.64 E-value=24 Score=35.27 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=21.7
Q ss_pred HHHHHHHcCc---ceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGY---NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGy---N~~IfAYGQTGSGKTyTM 282 (648)
+-++.++.|- ...+.-||.+|||||...
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4477788544 556789999999999875
No 261
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=38.62 E-value=22 Score=39.94 Aligned_cols=52 Identities=12% Similarity=0.272 Sum_probs=34.7
Q ss_pred CeEEEcceeeCCCCChhhHHhch-HHHHHHHHc----CcceEEEeecccCCCCceee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMD----GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v-~plV~svLd----GyN~~IfAYGQTGSGKTyTM 282 (648)
.+.+.||.+.+.-.--..+.+.+ ..+....+. -.---+.-||+.|+|||+..
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 34678888876554444455543 566777663 22345677999999999884
No 262
>PF13173 AAA_14: AAA domain
Probab=38.44 E-value=12 Score=34.28 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.7
Q ss_pred EEEeecccCCCCceeee
Q 047843 267 CIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi 283 (648)
.++-+|+.|+|||+.|.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999999983
No 263
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=38.36 E-value=22 Score=42.81 Aligned_cols=43 Identities=30% Similarity=0.453 Sum_probs=30.6
Q ss_pred ceeeCCCCChhhHHhc---h----HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 237 NHVFGPTATQDDVFKD---T----QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 237 D~VF~~~asQeeVf~~---v----~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++-+++++-|..+|.. . ..+++.+| |.|.-|-+ +||+|||+.-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 4445566666666643 1 35899999 99987655 9999999874
No 264
>PRK01172 ski2-like helicase; Provisional
Probab=38.35 E-value=20 Score=42.27 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=18.4
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..+.+|-| ++..++||||||...
T Consensus 30 ai~~l~~~~n--vlv~apTGSGKTl~a 54 (674)
T PRK01172 30 AIEQLRKGEN--VIVSVPTAAGKTLIA 54 (674)
T ss_pred HHHHHhcCCc--EEEECCCCchHHHHH
Confidence 3445677877 567789999999763
No 265
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=37.97 E-value=13 Score=30.64 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=12.1
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
++-+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 456788899999885
No 266
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=37.79 E-value=20 Score=42.12 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=25.2
Q ss_pred eCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 240 F~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|.+...|..+...+ +.+.-.....-++..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I---~~~~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEI---LQDLKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHH---HHHhccCCCccEEEECCCCCcHHHHH
Confidence 34555677666553 22222333345788999999999875
No 267
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.76 E-value=11 Score=31.50 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.1
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999765
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.74 E-value=24 Score=40.13 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=15.1
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
..|+..|++|+|||+|..
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999999974
No 269
>PRK13767 ATP-dependent helicase; Provisional
Probab=37.70 E-value=19 Score=44.17 Aligned_cols=25 Identities=44% Similarity=0.513 Sum_probs=19.2
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..+++|.|+.| ..+||||||...
T Consensus 40 Ai~~il~g~nvli--~APTGSGKTlaa 64 (876)
T PRK13767 40 AIPLIHEGKNVLI--SSPTGSGKTLAA 64 (876)
T ss_pred HHHHHHcCCCEEE--ECCCCCcHHHHH
Confidence 4556688998765 459999999873
No 270
>PRK08233 hypothetical protein; Provisional
Probab=37.55 E-value=14 Score=35.14 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.0
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+--|++|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999874
No 271
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=37.51 E-value=22 Score=38.26 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.3
Q ss_pred HcCcceEEEeecccCCCCceee
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTM 282 (648)
-.+-+..++-||+.|||||.||
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L 40 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLL 40 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHH
Confidence 3566788999999999999998
No 272
>PRK06851 hypothetical protein; Provisional
Probab=37.29 E-value=30 Score=38.49 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=22.8
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.+++++|.+-.++--|..|+|||++|
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHH
Confidence 455566778888899999999999998
No 273
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.97 E-value=24 Score=37.29 Aligned_cols=28 Identities=36% Similarity=0.595 Sum_probs=21.4
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.||+ ..+.--+..+--||+|++|||.++
T Consensus 183 ~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 183 APLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 3444 455566678889999999999887
No 274
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=36.70 E-value=12 Score=45.90 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=16.4
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
-|+-.+-.|.||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 3667778899999999998
No 275
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=36.68 E-value=13 Score=39.90 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=19.0
Q ss_pred CcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCc
Q 047843 421 RAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGA 457 (648)
Q Consensus 421 NSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~ 457 (648)
-.+|+++++ .+.+|. ++.|.|+.-...+.
T Consensus 185 l~kTivfVT-----HDidEA---~kLadri~vm~~G~ 213 (309)
T COG1125 185 LGKTIVFVT-----HDIDEA---LKLADRIAVMDAGE 213 (309)
T ss_pred hCCEEEEEe-----cCHHHH---HhhhceEEEecCCe
Confidence 357888876 455554 57888877665443
No 276
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=36.55 E-value=26 Score=34.83 Aligned_cols=28 Identities=29% Similarity=0.535 Sum_probs=20.9
Q ss_pred HHHHHHc-Ccc--eEEEeecccCCCCceeee
Q 047843 256 LIRSVMD-GYN--VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 256 lV~svLd-GyN--~~IfAYGQTGSGKTyTMi 283 (648)
-++.++. |+. ..+.-+|.+|||||...+
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 4677775 443 457789999999998863
No 277
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=36.34 E-value=13 Score=35.61 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=14.0
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|++|||||.++
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999987
No 278
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=36.29 E-value=1.6e+02 Score=29.69 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047843 130 DLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYH 171 (648)
Q Consensus 130 ~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 171 (648)
+|......+...++..+.+++++++++..+++.++......+
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k 147 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSK 147 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666667777777777777777777777777665544333
No 279
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=36.23 E-value=24 Score=37.55 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=22.2
Q ss_pred hhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
|+.+.+.+.. .+-.|. .-+++-||+.|+|||.+.
T Consensus 19 ~~~~~~~l~~---~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 19 QEHIVQTLKN---AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred cHHHHHHHHH---HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5555544332 333443 446789999999999876
No 280
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=35.96 E-value=24 Score=41.67 Aligned_cols=42 Identities=31% Similarity=0.551 Sum_probs=29.3
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
-+||.+++ |+.... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiG----qs~~~~---~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVG----QERAIK---ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhcee----CcHHHH---HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 35777665 333333 3455556678878888999999999875
No 281
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.69 E-value=2.1e+02 Score=27.03 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 126 KELVDLKDLLSRTKKEFKDLELQLHSDL 153 (648)
Q Consensus 126 ~~l~~Lk~~~~~~~~e~~~l~~~~~~~~ 153 (648)
..+..++..+........+.+..|..++
T Consensus 24 ~~~~~~~~dl~~q~~~a~~Aq~~YE~El 51 (132)
T PF07926_consen 24 EQLQSLREDLESQAKIAQEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 282
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.65 E-value=14 Score=41.49 Aligned_cols=18 Identities=50% Similarity=0.630 Sum_probs=15.0
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
-.|.-.|++|+|||+|+.
T Consensus 207 ~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLV 224 (407)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356778999999999983
No 283
>PRK10867 signal recognition particle protein; Provisional
Probab=35.62 E-value=32 Score=38.98 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=15.9
Q ss_pred ceEEEeecccCCCCceeee
Q 047843 265 NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTMi 283 (648)
-..|+..|.+|||||.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CEEEEEECCCCCcHHHHHH
Confidence 4577888999999999973
No 284
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=35.49 E-value=25 Score=42.43 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=20.4
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.|+.+. -+||||||..-
T Consensus 43 ~ai~~il~G~nvvv~--apTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVA--TGTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEE--CCCCCcHHHHH
Confidence 456778899997665 48999999763
No 285
>CHL00181 cbbX CbbX; Provisional
Probab=35.23 E-value=15 Score=38.96 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=13.1
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 566999999999986
No 286
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.21 E-value=2.4e+02 Score=27.94 Aligned_cols=42 Identities=17% Similarity=0.386 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 118 RQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQ 159 (648)
Q Consensus 118 ~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~ 159 (648)
.++....+.+...|+...+.++.+++.+++++++++..+...
T Consensus 65 ~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~ 106 (177)
T PF07798_consen 65 SELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAE 106 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888888899999999999888888776653
No 287
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=35.18 E-value=14 Score=36.40 Aligned_cols=15 Identities=47% Similarity=0.501 Sum_probs=12.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999884
No 288
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=35.18 E-value=22 Score=38.58 Aligned_cols=27 Identities=41% Similarity=0.714 Sum_probs=23.1
Q ss_pred HH-HHHHcCcceEEEeecccCCCCceee
Q 047843 256 LI-RSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV-~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+| .++-.||.--|++.|.||-|||.-|
T Consensus 32 LV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 32 LVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 45 4456899999999999999999877
No 289
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=35.14 E-value=13 Score=36.37 Aligned_cols=15 Identities=47% Similarity=0.512 Sum_probs=12.4
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999986
No 290
>PRK06217 hypothetical protein; Validated
Probab=35.04 E-value=16 Score=35.61 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=12.8
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 777899999999763
No 291
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.88 E-value=22 Score=41.73 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=26.8
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
+||.|.+ |+.|.+.++..+ -.|. .-+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~L~~~i---~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEPLSSAL---DAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 5677665 566655543333 2343 445788999999999886
No 292
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=34.47 E-value=17 Score=41.75 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=31.1
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+.||.+++.+..=..+.+.+ .. +...+..|+-+|.|||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 4678999887654333333333 22 2335778999999999999875
No 293
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=34.41 E-value=23 Score=39.90 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=20.6
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.|-++...| |||||||-+-
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 3577789999986555 9999999774
No 294
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=34.39 E-value=17 Score=34.20 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999774
No 295
>PRK14531 adenylate kinase; Provisional
Probab=34.36 E-value=17 Score=35.43 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=13.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-|+-+|..|||||+.-
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999874
No 296
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=34.35 E-value=15 Score=38.90 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=13.2
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-+|++|+|||+..
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999875
No 297
>CHL00176 ftsH cell division protein; Validated
Probab=34.15 E-value=23 Score=42.04 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=28.5
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcC---------cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDG---------YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdG---------yN~~IfAYGQTGSGKTyTM 282 (648)
.++||.|.+-+. +-+.+..++..+-++ ..-.|+-||++|+|||+..
T Consensus 179 ~~~f~dv~G~~~----~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 179 GITFRDIAGIEE----AKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCHHhccChHH----HHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 467888877543 333333333332221 1235889999999999986
No 298
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=33.94 E-value=27 Score=34.97 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred HHHHHHc-Cc--ceEEEeecccCCCCceee
Q 047843 256 LIRSVMD-GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLd-Gy--N~~IfAYGQTGSGKTyTM 282 (648)
-++.++. |+ ..++.-+|++|+|||+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 3566664 44 567788999999999875
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=33.93 E-value=19 Score=34.37 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=13.1
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
++-+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 577999999999865
No 300
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=33.88 E-value=28 Score=38.89 Aligned_cols=18 Identities=39% Similarity=0.724 Sum_probs=15.4
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
.-++.+|.||||||.+.+
T Consensus 45 ~h~lvig~tgSGKt~~~v 62 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFV 62 (469)
T ss_pred eEEEEEeCCCCCccceee
Confidence 557899999999998873
No 301
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=33.74 E-value=11 Score=38.32 Aligned_cols=12 Identities=33% Similarity=0.470 Sum_probs=10.8
Q ss_pred ecccCCCCceee
Q 047843 271 YGQTGSGKTHTM 282 (648)
Q Consensus 271 YGQTGSGKTyTM 282 (648)
-|++|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 499999999986
No 302
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.62 E-value=16 Score=41.22 Aligned_cols=18 Identities=39% Similarity=0.383 Sum_probs=15.5
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|.-.|+||+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346778899999999998
No 303
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=33.61 E-value=18 Score=34.50 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=13.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999875
No 304
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.28 E-value=2.3e+02 Score=27.56 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047843 125 EKELVDLKDLLSRTKKEFKDLE 146 (648)
Q Consensus 125 ~~~l~~Lk~~~~~~~~e~~~l~ 146 (648)
.+++.+|+.....+..++..|.
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~ 106 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLS 106 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555544444444
No 305
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=33.26 E-value=15 Score=32.45 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=13.0
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-+|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999876
No 306
>PRK14532 adenylate kinase; Provisional
Probab=33.22 E-value=20 Score=34.74 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+.-
T Consensus 2 ~i~~~G~pGsGKsT~a 17 (188)
T PRK14532 2 NLILFGPPAAGKGTQA 17 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999763
No 307
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=33.15 E-value=14 Score=40.86 Aligned_cols=16 Identities=50% Similarity=0.781 Sum_probs=12.2
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-++..|.||||||.+|
T Consensus 17 ~~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 17 HILIIGATGSGKTQAI 32 (386)
T ss_dssp -EEEEE-TTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4678899999999876
No 308
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.13 E-value=20 Score=41.36 Aligned_cols=42 Identities=29% Similarity=0.386 Sum_probs=27.1
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+||.|.+ |+.+.+.+...+.+ ....-.++-||+.|+|||.+.
T Consensus 12 ~~~dvvG----q~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 12 TFDEVVG----QEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTA 53 (504)
T ss_pred CHHHhcC----hHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHH
Confidence 4666654 66665554444433 122345689999999999886
No 309
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=33.08 E-value=36 Score=34.81 Aligned_cols=31 Identities=23% Similarity=0.189 Sum_probs=24.0
Q ss_pred hHHHHHHHHc--CcceEEEeecccCCCCceeee
Q 047843 253 TQPLIRSVMD--GYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 253 v~plV~svLd--GyN~~IfAYGQTGSGKTyTMi 283 (648)
+..+.+.+.+ .-...|.-||..|+|||....
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~ 37 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLAR 37 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeee
Confidence 4556666666 667788899999999998863
No 310
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=33.05 E-value=16 Score=43.57 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.6
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
|.-++-.|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 556678899999999998
No 311
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=33.03 E-value=18 Score=37.69 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=24.2
Q ss_pred CCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 242 PTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 242 ~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++++|....+....+-+. .-....|+-.|.||+|||.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 10 PDAAQTKALELEAKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cHHHHHHHHHHHHHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 345555554433333222 234567788999999999985
No 312
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=33.01 E-value=24 Score=39.21 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.3
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.-+|+..|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 699999999999999999765
No 313
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=32.89 E-value=34 Score=33.92 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=21.4
Q ss_pred HHHHHHHcCc---ceEEEeecccCCCCceeee
Q 047843 255 PLIRSVMDGY---NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 255 plV~svLdGy---N~~IfAYGQTGSGKTyTMi 283 (648)
+-++.++.|. ...+.-+|++|||||..+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 4577777643 4566778999999998763
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=32.53 E-value=27 Score=34.96 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred HHHHHcC-c--ceEEEeecccCCCCceee
Q 047843 257 IRSVMDG-Y--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdG-y--N~~IfAYGQTGSGKTyTM 282 (648)
++.++.| + +..++-+|.+|||||.-.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~ 36 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLA 36 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHH
Confidence 5666643 2 678899999999999654
No 315
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=32.42 E-value=20 Score=31.40 Aligned_cols=15 Identities=40% Similarity=0.714 Sum_probs=13.0
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 677899999999875
No 316
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=32.27 E-value=2.3e+02 Score=25.01 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 047843 119 QLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSD---LEDLGNQVQEMSSA 166 (648)
Q Consensus 119 ~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~---~~~~~~~~~e~~~~ 166 (648)
++|+.-..|...+-......+..-++++.++... +..+...+-+|+.+
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~ 54 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555544432 33344455555433
No 317
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=32.14 E-value=19 Score=36.10 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=13.9
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5888999999999774
No 318
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.07 E-value=4.8e+02 Score=28.45 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=30.5
Q ss_pred EEcceeeCCCCChhhHHhch-HHHHHHHH---cCcc--eEEEeecccCCCCcee
Q 047843 234 FQFNHVFGPTATQDDVFKDT-QPLIRSVM---DGYN--VCIFAYGQTGSGKTHT 281 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v-~plV~svL---dGyN--~~IfAYGQTGSGKTyT 281 (648)
-++..|=+-+..-++|-+.+ -|+.+.-+ =|.+ -.++.||+.|+|||-.
T Consensus 152 vsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml 205 (408)
T KOG0727|consen 152 VSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTML 205 (408)
T ss_pred ccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHH
Confidence 34455555555566666665 46665544 2333 4588999999999743
No 319
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=32.02 E-value=32 Score=33.70 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=17.5
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
..++..|+-+|.+|+||+...
T Consensus 19 a~~~~pVlI~GE~GtGK~~lA 39 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELLA 39 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHHH
Confidence 478899999999999999774
No 320
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.87 E-value=2e+02 Score=34.23 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhcCCCe
Q 047843 120 LLQMQEKELVDLKDLLSRTKKEFKDLELQLHSD---LEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNI 191 (648)
Q Consensus 120 ~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~---~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~elkGnI 191 (648)
....++.++.+|+..+..+..++.++..++... +.++...+++...........+...++.+..+.+...||
T Consensus 322 ~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni 396 (594)
T PF05667_consen 322 EQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI 396 (594)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 345666777777777777777777777655543 333344444444444444555555566665555554444
No 321
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=31.65 E-value=27 Score=41.51 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=21.9
Q ss_pred hhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|.++++.+...+ -+ +..+++..+||+|||+.-
T Consensus 2 Q~~~~~~i~~al---~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSL---RQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHH---hc--CCeEEEEcCCCCcHHHHH
Confidence 677776653322 23 355788899999999775
No 322
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=31.40 E-value=30 Score=42.32 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+++.+ .. |..++..|+||||||...
T Consensus 9 ~i~~~l-~~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 9 ALRDAL-AA-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHH-Hc-CCcEEEECCCCCCHHHHH
Confidence 344444 33 446678899999999875
No 323
>PRK06762 hypothetical protein; Provisional
Probab=31.29 E-value=22 Score=33.72 Aligned_cols=15 Identities=47% Similarity=0.665 Sum_probs=12.4
Q ss_pred EEEeecccCCCCcee
Q 047843 267 CIFAYGQTGSGKTHT 281 (648)
Q Consensus 267 ~IfAYGQTGSGKTyT 281 (648)
+|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 456689999999875
No 324
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=31.27 E-value=35 Score=41.78 Aligned_cols=41 Identities=32% Similarity=0.426 Sum_probs=28.0
Q ss_pred eeeCCCCChhhHHhchHHHHHHHHcCc------ceEEEeecccCCCCceee
Q 047843 238 HVFGPTATQDDVFKDTQPLIRSVMDGY------NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 238 ~VF~~~asQeeVf~~v~plV~svLdGy------N~~IfAYGQTGSGKTyTM 282 (648)
+|+| |.+.-+.+...|..+..|. .+.++-+|+||+|||++.
T Consensus 566 ~v~G----Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 566 RVVG----QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELA 612 (852)
T ss_pred ccCC----ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 4555 5555555555555555554 356778899999999886
No 325
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=31.26 E-value=25 Score=36.35 Aligned_cols=16 Identities=38% Similarity=0.437 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+-.-+|++|+|||.|+
T Consensus 34 ~~~~~GpagtGKteti 49 (231)
T PF12774_consen 34 GGALSGPAGTGKTETI 49 (231)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred CCCCcCCCCCCchhHH
Confidence 3346999999999996
No 326
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=31.08 E-value=15 Score=37.17 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+.-.|+.|||||.+|
T Consensus 28 ~~ivGpNGaGKSTll 42 (212)
T cd03274 28 SAIVGPNGSGKSNVI 42 (212)
T ss_pred EEEECCCCCCHHHHH
Confidence 346799999999997
No 327
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=30.97 E-value=18 Score=41.78 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=14.0
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4788999999999875
No 328
>PRK10689 transcription-repair coupling factor; Provisional
Probab=30.93 E-value=30 Score=43.81 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.4
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
..-++.+|+||||||-+.
T Consensus 621 ~~d~Ll~a~TGsGKT~va 638 (1147)
T PRK10689 621 AMDRLVCGDVGFGKTEVA 638 (1147)
T ss_pred CCCEEEEcCCCcCHHHHH
Confidence 345789999999999653
No 329
>CHL00195 ycf46 Ycf46; Provisional
Probab=30.70 E-value=19 Score=41.31 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.2
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999885
No 330
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.61 E-value=3.2e+02 Score=29.65 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=9.6
Q ss_pred HHHhHHhhhhhhhcCC
Q 047843 174 VNENRKLYNMVQDLRG 189 (648)
Q Consensus 174 ~~err~l~N~l~elkG 189 (648)
+..-+.-++.|+.+.|
T Consensus 278 v~~Lk~~~~~Le~~~g 293 (325)
T PF08317_consen 278 VKRLKAKVDALEKLTG 293 (325)
T ss_pred HHHHHHHHHHHHHHHC
Confidence 3344556666777776
No 331
>PRK04040 adenylate kinase; Provisional
Probab=30.59 E-value=21 Score=35.49 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=14.0
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-|+-+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4778999999999875
No 332
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=30.54 E-value=28 Score=41.88 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=26.3
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcC-cceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdG-yN~~IfAYGQTGSGKTyTM 282 (648)
+||.|.+ |+.+...+...+. .| ..-.++-||..|+|||++.
T Consensus 14 tFddIIG----Qe~vv~~L~~ai~---~~rl~Ha~Lf~GP~GvGKTTlA 55 (709)
T PRK08691 14 TFADLVG----QEHVVKALQNALD---EGRLHHAYLLTGTRGVGKTTIA 55 (709)
T ss_pred CHHHHcC----cHHHHHHHHHHHH---cCCCCeEEEEECCCCCcHHHHH
Confidence 4666655 5555554333322 33 3457899999999999886
No 333
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.36 E-value=8.4e+02 Score=27.59 Aligned_cols=80 Identities=26% Similarity=0.369 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhc
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQ---------LHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDL 187 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~---------~~~~~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~el 187 (648)
..+.++...+++.+++..++.++..+..++.. ..+.+..+.....++.. .+.....+...|.+.+...
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKE---ELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 44445555566666666666666665555441 11122222222222222 2233333445677777776
Q ss_pred --CCCeEEEEEeCC
Q 047843 188 --RGNIRVYCRVRP 199 (648)
Q Consensus 188 --kGnIRV~vRVRP 199 (648)
.+.|.|.=++.|
T Consensus 409 ~~~~~I~v~~~vyp 422 (451)
T PF03961_consen 409 YKEARIKVRKRVYP 422 (451)
T ss_pred ccceEEEECCEEEC
Confidence 334444445555
No 334
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.27 E-value=2.1e+02 Score=29.82 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=13.9
Q ss_pred hhhhhHHHHHhHHhhhhhh
Q 047843 167 ALGYHRVVNENRKLYNMVQ 185 (648)
Q Consensus 167 ~~~~~~~~~err~l~N~l~ 185 (648)
...|.+.+++.-+|-|+++
T Consensus 192 ~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 3468888888777777765
No 335
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=30.21 E-value=36 Score=38.28 Aligned_cols=18 Identities=44% Similarity=0.523 Sum_probs=15.5
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 366899999999999875
No 336
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=30.12 E-value=32 Score=32.47 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=16.0
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
+...+|...|++|.|||..+
T Consensus 100 ~~~~~v~~~G~~nvGKStli 119 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSII 119 (157)
T ss_pred ccceEEEEEeCCCCChHHHH
Confidence 34567777999999999886
No 337
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=30.11 E-value=21 Score=32.99 Aligned_cols=16 Identities=31% Similarity=0.520 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999876
No 338
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=30.11 E-value=31 Score=36.63 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=24.0
Q ss_pred CCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 242 PTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 242 ~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
+-..|.++-+.+ .+.+-+|.+ ++.-.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 344566655544 444456754 4566799999998874
No 339
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=30.11 E-value=31 Score=36.63 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=24.0
Q ss_pred CCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 242 PTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 242 ~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
+-..|.++-+.+ .+.+-+|.+ ++.-.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~~v---~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFMEEL---KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHHHH---HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 344566655544 444456754 4566799999998874
No 340
>PRK00300 gmk guanylate kinase; Provisional
Probab=29.99 E-value=20 Score=35.08 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=13.8
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|.-.|++|||||..+
T Consensus 6 ~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677899999999765
No 341
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=29.92 E-value=21 Score=42.06 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-..-.|+.|+|||||+
T Consensus 203 l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTL 218 (649)
T ss_pred ceEeeCCCCCCceeeH
Confidence 3456799999999998
No 342
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=29.76 E-value=25 Score=37.98 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=14.2
Q ss_pred EEEeecccCCCCceeee
Q 047843 267 CIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi 283 (648)
.|+-.|+||||||---+
T Consensus 6 ii~I~GpTasGKS~LAl 22 (300)
T PRK14729 6 IVFIFGPTAVGKSNILF 22 (300)
T ss_pred EEEEECCCccCHHHHHH
Confidence 57888999999997653
No 343
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=29.63 E-value=39 Score=35.78 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=20.3
Q ss_pred HHHHHHcCc---ceEEEeecccCCCCceeee
Q 047843 256 LIRSVMDGY---NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 256 lV~svLdGy---N~~IfAYGQTGSGKTyTMi 283 (648)
-++.++.|- ...+.-||.+|||||..++
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 355666543 4566789999999998763
No 344
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.16 E-value=3.6e+02 Score=32.29 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDL 153 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~ 153 (648)
....++.++.++.+|+..+++++.++..|+.++...-
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~ 463 (652)
T COG2433 427 LEETVERLEEENSELKRELEELKREIEKLESELERFR 463 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666788888888999999999999988888877543
No 345
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=29.15 E-value=24 Score=36.66 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.3
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
-++..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36778999999999875
No 346
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=29.11 E-value=25 Score=37.57 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
++..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567799999999874
No 347
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=29.07 E-value=54 Score=34.76 Aligned_cols=30 Identities=30% Similarity=0.475 Sum_probs=22.1
Q ss_pred hHHHHHHHHcC---cceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
+..++-.+|.| ....+|.||..|+|||..+
T Consensus 61 l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 61 LQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 34455555555 4578999999999999875
No 348
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=29.03 E-value=47 Score=37.72 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=16.1
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-.|.+|+|||+|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467889999999999997
No 349
>PRK14530 adenylate kinase; Provisional
Probab=28.91 E-value=23 Score=35.39 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|.+|||||+..
T Consensus 5 ~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 5 RILLLGAPGAGKGTQS 20 (215)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999774
No 350
>PHA02624 large T antigen; Provisional
Probab=28.69 E-value=39 Score=40.15 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHHHHHcCcce--EEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNV--CIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~--~IfAYGQTGSGKTyT 281 (648)
++..++.|..- ||+-||+.|||||+-
T Consensus 420 ~lk~~l~giPKk~~il~~GPpnTGKTtf 447 (647)
T PHA02624 420 ILKLIVENVPKRRYWLFKGPVNSGKTTL 447 (647)
T ss_pred HHHHHHhcCCCCeEEEEECCCCCCHHHH
Confidence 36667777766 999999999999976
No 351
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.66 E-value=32 Score=38.40 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=22.8
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+|..+|+|-+| +.+..||||||...
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AF 61 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAF 61 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhh
Confidence 4578999999997 56779999999875
No 352
>PRK14527 adenylate kinase; Provisional
Probab=28.62 E-value=26 Score=34.27 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.3
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
-.|+-+|.+|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999998764
No 353
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=28.24 E-value=27 Score=33.41 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=13.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999876
No 354
>PRK03839 putative kinase; Provisional
Probab=28.22 E-value=24 Score=33.99 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=12.3
Q ss_pred EEeecccCCCCcee
Q 047843 268 IFAYGQTGSGKTHT 281 (648)
Q Consensus 268 IfAYGQTGSGKTyT 281 (648)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999976
No 355
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=28.16 E-value=25 Score=32.56 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.4
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
..+.-|+-+|..||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 56777888999999999875
No 356
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.12 E-value=33 Score=40.66 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=26.6
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
+||.|.| |+.+...+..+ +-.|. .-.++-||..|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~L~~~---l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQALTNA---LTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHHHHH---HHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777775 56655543222 22332 245688999999999987
No 357
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=28.08 E-value=23 Score=39.86 Aligned_cols=17 Identities=47% Similarity=0.538 Sum_probs=14.9
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 46888999999999885
No 358
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.00 E-value=41 Score=34.31 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=19.6
Q ss_pred HHHHHHc-Cc--ceEEEeecccCCCCcee
Q 047843 256 LIRSVMD-GY--NVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLd-Gy--N~~IfAYGQTGSGKTyT 281 (648)
-++.++. |+ ..+++-+|.+|||||.-
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 3566665 43 57788899999999964
No 359
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=27.92 E-value=17 Score=40.22 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=11.6
Q ss_pred eecccCCCCceee
Q 047843 270 AYGQTGSGKTHTM 282 (648)
Q Consensus 270 AYGQTGSGKTyTM 282 (648)
-.|++|||||+++
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999997
No 360
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.60 E-value=37 Score=36.72 Aligned_cols=41 Identities=24% Similarity=0.472 Sum_probs=25.3
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
+||.|.+ |+++-+. +...+-.|. ...++-||+.|+|||++.
T Consensus 15 ~~~~iig----~~~~~~~---l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 15 TFDDVVG----QSHITNT---LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred cHHhcCC----cHHHHHH---HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4666543 4444333 333333453 446778999999999876
No 361
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=27.42 E-value=26 Score=34.86 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-+|..|||||+.-
T Consensus 2 I~i~G~pGsGKsT~a 16 (210)
T TIGR01351 2 LVLLGPPGSGKGTQA 16 (210)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999998763
No 362
>PRK09401 reverse gyrase; Reviewed
Probab=27.37 E-value=41 Score=42.77 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=18.9
Q ss_pred HHHHHHcCcceEEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
.+..++.|.|+.+. ++||||||..
T Consensus 88 ~i~~il~g~dv~i~--ApTGsGKT~f 111 (1176)
T PRK09401 88 WAKRLLLGESFAII--APTGVGKTTF 111 (1176)
T ss_pred HHHHHHCCCcEEEE--cCCCCCHHHH
Confidence 46678899887655 5999999964
No 363
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=27.26 E-value=33 Score=42.79 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=22.8
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...|..++.|.+.+| -.|..|+||||+|
T Consensus 352 r~Av~~il~s~~v~v-v~G~AGTGKTT~l 379 (988)
T PRK13889 352 ADALAHVTDGRDLGV-VVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHHhcCCCeEE-EEeCCCCCHHHHH
Confidence 346788888877654 8899999999987
No 364
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=27.07 E-value=33 Score=36.96 Aligned_cols=42 Identities=14% Similarity=0.332 Sum_probs=26.2
Q ss_pred cceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 236 FNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 236 FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
||.+++.+.. ...+...+..+. ..+.-|+-+|.+||||++.-
T Consensus 5 ~~~liG~S~~----~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEANS----FLEVLEQVSRLA-PLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCHH----HHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 4555554333 333333334443 45778888999999999875
No 365
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=27.01 E-value=26 Score=41.09 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.3
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
.+.++..|..|||||.||
T Consensus 14 ~~~~~V~Ag~GSGKT~~L 31 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVI 31 (664)
T ss_pred CCCEEEEecCCCCHHHHH
Confidence 345778889999999999
No 366
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=26.97 E-value=23 Score=43.23 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.2
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.-++-.|.||||||++|
T Consensus 450 ~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 450 YNMAVCGTSGAGKTGLI 466 (844)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 34567799999999998
No 367
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=26.96 E-value=25 Score=33.35 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=12.2
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567799999998753
No 368
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=26.94 E-value=24 Score=34.48 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999885
No 369
>CHL00095 clpC Clp protease ATP binding subunit
Probab=26.94 E-value=47 Score=40.48 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=24.4
Q ss_pred hhhHHhchHHHHHHHHcCcc------eEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGYN------VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGyN------~~IfAYGQTGSGKTyTM 282 (648)
|++.-+.+...|....-|.. +.++-+|+||+|||++.
T Consensus 514 Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 514 QDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 66666665555554444432 45556999999999875
No 370
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=26.86 E-value=29 Score=39.24 Aligned_cols=18 Identities=44% Similarity=0.569 Sum_probs=15.5
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+..|.+|||||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 356788899999999996
No 371
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=26.75 E-value=36 Score=42.25 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.5
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
|...-++..|+||||||-+.
T Consensus 470 ~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 470 PRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred cCcCCEEEECCCCccHHHHH
Confidence 33345688999999999775
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=26.74 E-value=25 Score=35.12 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.+.-.|++|||||..|
T Consensus 30 ~~~i~G~NGsGKSTll 45 (213)
T cd03279 30 LFLICGPTGAGKSTIL 45 (213)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4557899999999887
No 373
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=26.71 E-value=48 Score=37.50 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=28.0
Q ss_pred hHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 248 DVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 248 eVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..-+.+..-++.+-+|....-|-.|.-||||||.+
T Consensus 32 ~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 32 REIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 33344444467788999999999999999999997
No 374
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=26.58 E-value=28 Score=38.27 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=45.8
Q ss_pred EcceeeCCCCChhhHHhch-HHH-HHHHHcCcc---eEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHH
Q 047843 235 QFNHVFGPTATQDDVFKDT-QPL-IRSVMDGYN---VCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVL 309 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v-~pl-V~svLdGyN---~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl 309 (648)
..+.|-+-+..-+.+=+.| -|+ ...+|.|.. ..|+-||+.|+||+|.--.... =.+-|.+.|.|.+=+-
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT------EAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT------EANSTFFSVSSSDLVS 204 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh------hcCCceEEeehHHHHH
Confidence 3455555444444444443 453 456676765 6799999999999997422111 1345778888777666
Q ss_pred HHHHhh
Q 047843 310 QLMKLG 315 (648)
Q Consensus 310 ~lL~~G 315 (648)
.+|-..
T Consensus 205 KWmGES 210 (439)
T KOG0739|consen 205 KWMGES 210 (439)
T ss_pred HHhccH
Confidence 665443
No 375
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=26.56 E-value=47 Score=42.66 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=16.5
Q ss_pred HHHcCcceEEEeecccCCCCceee
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+++ |..++-.|.||||||.-+
T Consensus 77 ~~l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 77 EAIAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHHHh-CceEEEeCCCCCCcHHHH
Confidence 33444 445667799999999865
No 376
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=26.54 E-value=38 Score=40.66 Aligned_cols=34 Identities=32% Similarity=0.733 Sum_probs=26.6
Q ss_pred HHhchHHHHHHHH--cCcceEEEeecccCCCCceee
Q 047843 249 VFKDTQPLIRSVM--DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 249 Vf~~v~plV~svL--dGyN~~IfAYGQTGSGKTyTM 282 (648)
-|..+...++.++ +|--+|+.--|-.|||||.|.
T Consensus 404 E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV 439 (767)
T KOG1514|consen 404 EFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATV 439 (767)
T ss_pred HHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehH
Confidence 4555666666666 367779999999999999997
No 377
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.51 E-value=31 Score=40.28 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=24.3
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
+||.|.| |+.+...+...+ -.|. .-.++-||+.|+|||.+.
T Consensus 14 ~f~diiG----q~~~v~~L~~~i---~~~rl~ha~Lf~Gp~GvGKTTlA 55 (546)
T PRK14957 14 SFAEVAG----QQHALNSLVHAL---ETQKVHHAYLFTGTRGVGKTTLG 55 (546)
T ss_pred cHHHhcC----cHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHH
Confidence 4666654 566655433222 2332 223556999999999876
No 378
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=26.40 E-value=26 Score=42.50 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-.+-.|+||||||++|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3456899999999998
No 379
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.36 E-value=25 Score=41.14 Aligned_cols=17 Identities=47% Similarity=0.583 Sum_probs=13.5
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.+|.-.|+||+|||+|+
T Consensus 351 ~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 351 GVIALVGPTGAGKTTTI 367 (559)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34445599999999997
No 380
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=26.29 E-value=39 Score=36.97 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.6
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..++-.+++..-+-++-.|.+|+|||..+
T Consensus 14 ~al~~~~~~~~~g~vli~G~~G~gKttl~ 42 (337)
T TIGR02030 14 LALLLNVIDPKIGGVMVMGDRGTGKSTAV 42 (337)
T ss_pred HHHHHHhcCCCCCeEEEEcCCCCCHHHHH
Confidence 45667777876777889999999999886
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=26.22 E-value=25 Score=35.16 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+++-+|++|||||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7788999999999886
No 382
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=26.18 E-value=26 Score=33.49 Aligned_cols=16 Identities=44% Similarity=0.569 Sum_probs=12.9
Q ss_pred EEeecccCCCCceeee
Q 047843 268 IFAYGQTGSGKTHTMI 283 (648)
Q Consensus 268 IfAYGQTGSGKTyTMi 283 (648)
+.-.|.+|+|||.+..
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4456999999999963
No 383
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=26.17 E-value=53 Score=33.26 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=15.1
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
+..-.|.-.|.+|||||+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 44455666799999999875
No 384
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=26.01 E-value=42 Score=36.81 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCCChhhHHhc-h-HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 242 PTATQDDVFKD-T-QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 242 ~~asQeeVf~~-v-~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|..+..-+|+. + ..++..+.. +.-|+-.|.+|+|||...
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 33333444442 2 444444443 445788999999999875
No 385
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=25.95 E-value=31 Score=40.43 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=29.9
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+.||.+.+.+ ..+..+...+..+. ..+..|+-+|.+|+||++.-
T Consensus 321 ~~~~~~l~g~s----~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 321 SHTFDHMPQDS----PQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred cccccceEECC----HHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHH
Confidence 46788777643 34444433444443 45778999999999999874
No 386
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=25.95 E-value=28 Score=34.58 Aligned_cols=16 Identities=44% Similarity=0.420 Sum_probs=12.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|.+|||||+.+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999754
No 387
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=25.92 E-value=42 Score=42.72 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=20.3
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.+.. +.++||||||+.+
T Consensus 85 ~~i~~il~G~d~v--i~ApTGsGKT~f~ 110 (1171)
T TIGR01054 85 MWAKRVLRGDSFA--IIAPTGVGKTTFG 110 (1171)
T ss_pred HHHHHHhCCCeEE--EECCCCCCHHHHH
Confidence 3567789999766 5679999999754
No 388
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=34 Score=37.10 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=29.2
Q ss_pred eEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHhhh
Q 047843 266 VCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGE 316 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~ 316 (648)
-.|+.||+.|+|||..--. -..-.+++.+.|--.+=+..++-.|.
T Consensus 212 kgvllygppgtgktl~ara------vanrtdacfirvigselvqkyvgega 256 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCARA------VANRTDACFIRVIGSELVQKYVGEGA 256 (435)
T ss_pred CceEEeCCCCCchhHHHHH------HhcccCceEEeehhHHHHHHHhhhhH
Confidence 3589999999999975311 11224566677766666777765553
No 389
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=25.64 E-value=22 Score=43.04 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.5
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
+-.+-+|+||||||.+|
T Consensus 427 g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 427 GMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34678899999999997
No 390
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=25.60 E-value=27 Score=35.24 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+..-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 3446799999999987
No 391
>PRK00279 adk adenylate kinase; Reviewed
Probab=25.52 E-value=30 Score=34.59 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=13.0
Q ss_pred EEEeecccCCCCcee
Q 047843 267 CIFAYGQTGSGKTHT 281 (648)
Q Consensus 267 ~IfAYGQTGSGKTyT 281 (648)
.|+-+|..|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999976
No 392
>PTZ00301 uridine kinase; Provisional
Probab=25.43 E-value=22 Score=36.14 Aligned_cols=12 Identities=42% Similarity=0.661 Sum_probs=10.2
Q ss_pred eecccCCCCcee
Q 047843 270 AYGQTGSGKTHT 281 (648)
Q Consensus 270 AYGQTGSGKTyT 281 (648)
--|.+|||||+.
T Consensus 8 IaG~SgSGKTTl 19 (210)
T PTZ00301 8 ISGASGSGKSSL 19 (210)
T ss_pred EECCCcCCHHHH
Confidence 459999999986
No 393
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=25.38 E-value=41 Score=38.20 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=25.4
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcc-eEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYN-VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN-~~IfAYGQTGSGKTyTM 282 (648)
+||.|+| |+.+-. .+...+-.|.- -.++-||+.|+|||.+.
T Consensus 15 ~~~diiG----q~~~v~---~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILG----QDAVVA---VLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcC----cHHHHH---HHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 5777776 344432 23333334542 34566999999999886
No 394
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=25.13 E-value=26 Score=42.85 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.5
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
++-.+..|+||||||+.|
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 455688899999999998
No 395
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=25.13 E-value=42 Score=39.33 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=44.1
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee--------eeccc---CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhccc
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM--------IRSCA---SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVS 322 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM--------i~~~~---~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~ 322 (648)
+..|..+|+|-++-|- .|||||||-.- .+... ...|.+ ..+-|.+-+=+++.+...++-
T Consensus 165 kq~IP~lL~grD~lV~--aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~----ALVivPTREL~~Q~y~~~qKL---- 234 (708)
T KOG0348|consen 165 KQAIPVLLEGRDALVR--AQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY----ALVIVPTRELALQIYETVQKL---- 234 (708)
T ss_pred hcchhhhhcCcceEEE--cCCCCcccHHHHHHHHHHHHhcCccccccCCce----EEEEechHHHHHHHHHHHHHH----
Confidence 3567778899998665 49999999542 12111 122332 245667777777777655432
Q ss_pred ccccccCCCCceEEEEEEEEE
Q 047843 323 STAINNRSSRSHSVLTIHVHG 343 (648)
Q Consensus 323 sT~~N~~SSRSH~IftI~V~~ 343 (648)
-++.|.|+--.+-+
T Consensus 235 -------l~~~hWIVPg~lmG 248 (708)
T KOG0348|consen 235 -------LKPFHWIVPGVLMG 248 (708)
T ss_pred -------hcCceEEeeceeec
Confidence 13467777666644
No 396
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.07 E-value=47 Score=38.76 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=30.2
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|.||.+++.+. ....+...+.. +...+..|+-+|.+||||++.-
T Consensus 215 ~~~f~~iiG~S~----~m~~~~~~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSP----QMEQVRQTILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCH----HHHHHHHHHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 367888877543 33333333333 3456889999999999999764
No 397
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=25.02 E-value=48 Score=39.39 Aligned_cols=42 Identities=17% Similarity=0.468 Sum_probs=25.8
Q ss_pred cceeeCCCCChhhHHhchHHHHHHHH---cCcceEEEeecccCCCCcee
Q 047843 236 FNHVFGPTATQDDVFKDTQPLIRSVM---DGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 236 FD~VF~~~asQeeVf~~v~plV~svL---dGyN~~IfAYGQTGSGKTyT 281 (648)
|+.+|| ++++-+.+-..+.++. ..-.-.++-.|++|+|||.-
T Consensus 75 F~d~yG----lee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsL 119 (644)
T PRK15455 75 FEEFYG----MEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSL 119 (644)
T ss_pred hhcccC----cHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHH
Confidence 666776 4555554323333333 34456778889999999954
No 398
>PRK11637 AmiB activator; Provisional
Probab=24.94 E-value=2.2e+02 Score=31.86 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047843 467 VMQLKEQIESLKKALAN 483 (648)
Q Consensus 467 i~~Lk~eI~~LK~~L~~ 483 (648)
+.+|+++.+.|.+.|+.
T Consensus 235 l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 235 LSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 399
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=24.89 E-value=33 Score=41.06 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.8
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
-.|+-||++|+|||+.+
T Consensus 213 ~giLL~GppGtGKT~la 229 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLA 229 (733)
T ss_pred ceEEEECCCCCChHHHH
Confidence 46889999999999775
No 400
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=24.87 E-value=24 Score=31.25 Aligned_cols=15 Identities=20% Similarity=0.425 Sum_probs=12.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999875
No 401
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=24.81 E-value=9.3e+02 Score=27.79 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 120 LLQMQEKELVDLKDLLSRTKKEFKDLELQLHS 151 (648)
Q Consensus 120 ~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~ 151 (648)
.++..+.|+..||..+..+..++.+--.||.+
T Consensus 254 hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~ 285 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTYLSRAQKSYQEKLMQYRA 285 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777776666655554444443
No 402
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=24.80 E-value=27 Score=38.17 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=14.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-++++|..|||||+++
T Consensus 3 ~~i~~GgrgSGKS~~~ 18 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAI 18 (396)
T ss_pred eEEEeCCCCcccHHHH
Confidence 3679999999999997
No 403
>PRK04182 cytidylate kinase; Provisional
Probab=24.76 E-value=33 Score=32.40 Aligned_cols=16 Identities=44% Similarity=0.513 Sum_probs=13.2
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|.+|||||...
T Consensus 2 ~I~i~G~~GsGKstia 17 (180)
T PRK04182 2 IITISGPPGSGKTTVA 17 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999874
No 404
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=24.72 E-value=48 Score=34.17 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=18.2
Q ss_pred HHHHHcC---cceEEEeecccCCCCceee
Q 047843 257 IRSVMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
++.++.| ....++-||..|||||.--
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHH
Confidence 3444443 2567788999999999553
No 405
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=24.65 E-value=43 Score=39.74 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.3
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
.-++.+|+||||||..++
T Consensus 176 ~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred ceEEEEecCCCCCceEEE
Confidence 347899999999999874
No 406
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=24.63 E-value=56 Score=34.92 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=18.9
Q ss_pred HHHHHcCc---ceEEEeecccCCCCceee
Q 047843 257 IRSVMDGY---NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGy---N~~IfAYGQTGSGKTyTM 282 (648)
++.++.|- ...+.-||.+|||||...
T Consensus 91 lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 91 LDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred HHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 45555542 556678999999999876
No 407
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.62 E-value=34 Score=40.04 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=19.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.+-.++.+-+ ++|+++||||||+.-
T Consensus 165 ~aipvfl~~r~--~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 165 QAIPVFLEKRD--VLACAPTGSGKTLAF 190 (593)
T ss_pred hhhhhhhcccc--eEEeccCCCcchhhh
Confidence 45666666555 589999999998774
No 408
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=24.61 E-value=26 Score=40.95 Aligned_cols=16 Identities=44% Similarity=0.667 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3678999999999765
No 409
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=24.50 E-value=41 Score=40.66 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.+ +..++-.|..|+||||+|
T Consensus 359 ~Av~~i~~s-~~~~il~G~aGTGKTtll 385 (744)
T TIGR02768 359 EAVRHVTGS-GDIAVVVGRAGTGKSTML 385 (744)
T ss_pred HHHHHHhcC-CCEEEEEecCCCCHHHHH
Confidence 456667765 335567899999999998
No 410
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=24.43 E-value=33 Score=35.74 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=13.2
Q ss_pred EEEeecccCCCCcee
Q 047843 267 CIFAYGQTGSGKTHT 281 (648)
Q Consensus 267 ~IfAYGQTGSGKTyT 281 (648)
.|+-.|..|||||+.
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 578899999999876
No 411
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=24.35 E-value=66 Score=39.41 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=27.8
Q ss_pred hhhHHhc--hHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 246 QDDVFKD--TQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~--v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...-|+. +..+++++-+|-+-.+++ =.||+|||||-
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlv-MATGTGKTrTA 202 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLV-MATGTGKTRTA 202 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEE-EecCCCcceeH
Confidence 3445654 578899999999995554 47999999996
No 412
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=24.23 E-value=24 Score=40.56 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=13.9
Q ss_pred ccCchhhhcccccCCcccc
Q 047843 562 LLGSASRQKFNQFRDAEAV 580 (648)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~ 580 (648)
-..||+..+|.+.-|.|+-
T Consensus 395 ~~~S~l~~kY~~~iDreSA 413 (502)
T PF05872_consen 395 IAASPLYGKYDEAIDRESA 413 (502)
T ss_pred HHcCcchhhhCCccCchhH
Confidence 3457788888888888843
No 413
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=32 Score=41.56 Aligned_cols=49 Identities=24% Similarity=0.255 Sum_probs=29.7
Q ss_pred CcceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHhhhh
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLGEL 317 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~ 317 (648)
-....|+-||+.|+||||-.-.. . .--++..+.|+-++=+-.+|-..+.
T Consensus 699 r~~~giLLyGppGcGKT~la~a~-a-----~~~~~~fisvKGPElL~KyIGaSEq 747 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAI-A-----SNSNLRFISVKGPELLSKYIGASEQ 747 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHH-H-----hhCCeeEEEecCHHHHHHHhcccHH
Confidence 34567999999999999974111 1 1124555666666555555544433
No 414
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=24.21 E-value=35 Score=32.02 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=11.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|+||||||.-+
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999755
No 415
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=24.18 E-value=37 Score=39.38 Aligned_cols=45 Identities=18% Similarity=0.475 Sum_probs=30.9
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|.||.+++.+. ....+...+..+ ...+..|+-+|.+|+||++..
T Consensus 208 ~~~f~~iiG~S~----~m~~~~~~i~~~-A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASA----PMEQVRALVRLY-ARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCH----HHHHHHHHHHHH-hCCCCcEEEECCCCcCHHHHH
Confidence 478888887543 333333333333 456789999999999999875
No 416
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=24.18 E-value=34 Score=36.96 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|+||||||..-
T Consensus 6 ~i~i~GptgsGKt~la 21 (307)
T PRK00091 6 VIVIVGPTASGKTALA 21 (307)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4778899999999764
No 417
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=24.17 E-value=29 Score=38.18 Aligned_cols=15 Identities=27% Similarity=0.647 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+.-.|++|||||+++
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999997
No 418
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=24.13 E-value=48 Score=31.98 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.5
Q ss_pred HHHHHHc-CcceEEEeecccCCCCceee
Q 047843 256 LIRSVMD-GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLd-GyN~~IfAYGQTGSGKTyTM 282 (648)
++..+.. .-...|+-.|..|||||.-+
T Consensus 4 ~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 4 VLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcccCcEEEEEEECCCccchHHHH
Confidence 4556654 67889999999999999754
No 419
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=24.12 E-value=45 Score=38.59 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=21.9
Q ss_pred hHHHHHHHHcCcc------eEEEeecccCCCCceeee
Q 047843 253 TQPLIRSVMDGYN------VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 253 v~plV~svLdGyN------~~IfAYGQTGSGKTyTMi 283 (648)
++.=+..+++|.+ -.|+-+|++|||||+.|-
T Consensus 14 Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 14 IQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4444556677744 346779999999998874
No 420
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=23.98 E-value=31 Score=35.24 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=13.2
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|..|||||+..
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999875
No 421
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=23.93 E-value=33 Score=33.12 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.8
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|++|||||...
T Consensus 4 ~i~l~G~~gsGKst~a 19 (175)
T cd00227 4 IIILNGGSSAGKSSIA 19 (175)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999764
No 422
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=23.73 E-value=36 Score=32.10 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=17.8
Q ss_pred HHHHHcCcceEEEeecccCCCCceee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+-..+.+. ..|+-+|.-|||||+-.
T Consensus 8 l~~~l~~g-~vi~L~GdLGaGKTtf~ 32 (123)
T PF02367_consen 8 LAQILKPG-DVILLSGDLGAGKTTFV 32 (123)
T ss_dssp HHHHHSS--EEEEEEESTTSSHHHHH
T ss_pred HHHhCCCC-CEEEEECCCCCCHHHHH
Confidence 33444444 55889999999999875
No 423
>PLN02200 adenylate kinase family protein
Probab=23.73 E-value=36 Score=35.07 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=14.0
Q ss_pred eEEEeecccCCCCcee
Q 047843 266 VCIFAYGQTGSGKTHT 281 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyT 281 (648)
..||-.|.+|||||+.
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4688999999999976
No 424
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.69 E-value=1.5e+02 Score=34.70 Aligned_cols=17 Identities=47% Similarity=0.743 Sum_probs=12.5
Q ss_pred CcceEEEeecccCCCCcee
Q 047843 263 GYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyT 281 (648)
+-+.||=| +||||||-.
T Consensus 183 ~rDIcV~A--pTGSGKTLa 199 (620)
T KOG0350|consen 183 PRDICVNA--PTGSGKTLA 199 (620)
T ss_pred CCceEEec--CCCCCceee
Confidence 44666654 899999955
No 425
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=23.65 E-value=35 Score=37.07 Aligned_cols=18 Identities=50% Similarity=0.658 Sum_probs=16.6
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
-+||+..|..|||||.-|
T Consensus 19 p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CcEEEEEecCCCCchhHH
Confidence 579999999999999887
No 426
>PRK02496 adk adenylate kinase; Provisional
Probab=23.62 E-value=34 Score=33.05 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|+.|||||...
T Consensus 4 i~i~G~pGsGKst~a 18 (184)
T PRK02496 4 LIFLGPPGAGKGTQA 18 (184)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999998764
No 427
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=23.61 E-value=46 Score=38.29 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=20.9
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...|..++.|.++ ++..|||||||..-
T Consensus 57 ~~~IP~~l~g~Dv--i~~A~TGsGKT~Af 83 (513)
T COG0513 57 LAAIPLILAGRDV--LGQAQTGTGKTAAF 83 (513)
T ss_pred HHHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 3567888899665 67789999998664
No 428
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=23.51 E-value=34 Score=38.98 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.7
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.-|+-+|+||+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999885
No 429
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=23.46 E-value=35 Score=40.84 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=14.3
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34777999999999875
No 430
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.37 E-value=51 Score=36.54 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=24.8
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHH-cCcc-eEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVM-DGYN-VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svL-dGyN-~~IfAYGQTGSGKTyTM 282 (648)
.||.|++ |+.+-+ .+..++ .|.- -.++-||+.|+|||.+.
T Consensus 14 ~~~eiiG----q~~~~~----~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHITR----TIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHHHH----HHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5777775 444433 334444 3432 24667999999999875
No 431
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.34 E-value=28 Score=36.21 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999887
No 432
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=23.31 E-value=37 Score=36.93 Aligned_cols=17 Identities=47% Similarity=0.485 Sum_probs=14.4
Q ss_pred EEEeecccCCCCceeee
Q 047843 267 CIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi 283 (648)
.|+-+|+|+||||...+
T Consensus 5 ~i~I~GPTAsGKT~lai 21 (308)
T COG0324 5 LIVIAGPTASGKTALAI 21 (308)
T ss_pred EEEEECCCCcCHHHHHH
Confidence 46788999999998863
No 433
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=23.30 E-value=28 Score=42.63 Aligned_cols=18 Identities=39% Similarity=0.541 Sum_probs=16.0
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
|.-.+..|+||||||+.|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 666788899999999998
No 434
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=23.24 E-value=51 Score=37.62 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=21.2
Q ss_pred HHHHHHHcC---cceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
+=++.++.| ....++-+|.+|||||.-.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~ 48 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLFA 48 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHHH
Confidence 346777764 3678889999999999654
No 435
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=23.20 E-value=37 Score=38.94 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=13.0
Q ss_pred eEEEeecccCCCCcee
Q 047843 266 VCIFAYGQTGSGKTHT 281 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyT 281 (648)
+-|+-.|+||||||+-
T Consensus 227 SNvLllGPtGsGKTll 242 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLL 242 (564)
T ss_pred ccEEEECCCCCchhHH
Confidence 3467789999999975
No 436
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=23.04 E-value=98 Score=30.17 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=29.1
Q ss_pred EEEeecccCCCCceeeeecccC---CCC------------cccCCCcEEEecCHHHHHHHHHhhh
Q 047843 267 CIFAYGQTGSGKTHTMIRSCAS---ENG------------LNLPDATMHSVKSTADVLQLMKLGE 316 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~~~~---~~g------------~~V~~lt~~~V~S~eevl~lL~~G~ 316 (648)
.|+-.|++||||++-+-..... .-+ ..+.|...+. -|.+++.++++.|.
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~f-vs~~ef~~~i~~g~ 67 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHF-VSREEFEDDIKSGL 67 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEE-CCHHHHHHHHHcCC
Confidence 5778899999999865211110 001 1123433334 46889999888764
No 437
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=23.01 E-value=30 Score=36.15 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=11.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+.-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 456899999999885
No 438
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.95 E-value=65 Score=37.95 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=30.5
Q ss_pred EEEeecccCCCCceee--eecccC------CCCcccCCCcEEEecCHHHHHHHHHhhhhh
Q 047843 267 CIFAYGQTGSGKTHTM--IRSCAS------ENGLNLPDATMHSVKSTADVLQLMKLGELN 318 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM--i~~~~~------~~g~~V~~lt~~~V~S~eevl~lL~~G~~n 318 (648)
.|+-||+.|+|||-.- ||.... -+|..| |....=.|.+-+..|+..++.-
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI--L~KYVGeSE~NvR~LFaDAEeE 315 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI--LNKYVGESEENVRKLFADAEEE 315 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH--HHHhhcccHHHHHHHHHhHHHH
Confidence 4899999999999653 222111 122222 2334456778888888877543
No 439
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.94 E-value=38 Score=36.64 Aligned_cols=20 Identities=45% Similarity=0.891 Sum_probs=15.6
Q ss_pred EEEeecccCCCCceeeeeccc
Q 047843 267 CIFAYGQTGSGKTHTMIRSCA 287 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~~~ 287 (648)
.++.||+.|+|||.. -+.|.
T Consensus 207 GvLmYGPPGTGKTlm-ARAcA 226 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLM-ARACA 226 (424)
T ss_pred ceEeeCCCCCcHHHH-HHHHH
Confidence 588999999999864 45554
No 440
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=22.94 E-value=35 Score=33.51 Aligned_cols=15 Identities=40% Similarity=0.461 Sum_probs=12.3
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999874
No 441
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=22.90 E-value=22 Score=34.25 Aligned_cols=12 Identities=42% Similarity=0.695 Sum_probs=10.6
Q ss_pred ecccCCCCceee
Q 047843 271 YGQTGSGKTHTM 282 (648)
Q Consensus 271 YGQTGSGKTyTM 282 (648)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 499999999986
No 442
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=22.89 E-value=42 Score=38.45 Aligned_cols=43 Identities=16% Similarity=0.338 Sum_probs=27.3
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+.+... ....+...|.. +...+..|+-+|.+|+||++..
T Consensus 185 ~~~~iig~s~----~~~~~~~~i~~-~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSP----AMQQLKKEIEV-VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCH----HHHHHHHHHHH-HhCCCCcEEEECCCCccHHHHH
Confidence 3455555332 33333333444 3456889999999999999875
No 443
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=22.75 E-value=46 Score=38.89 Aligned_cols=44 Identities=16% Similarity=0.443 Sum_probs=30.5
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCc
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKT 279 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKT 279 (648)
...|+||.+.+.+.. +..+..+ -.-..+.+++|+-+|.||+||-
T Consensus 239 ~a~y~f~~Iig~S~~----m~~~~~~-akr~A~tdstVLi~GESGTGKE 282 (560)
T COG3829 239 KAKYTFDDIIGESPA----MLRVLEL-AKRIAKTDSTVLILGESGTGKE 282 (560)
T ss_pred ccccchhhhccCCHH----HHHHHHH-HHhhcCCCCcEEEecCCCccHH
Confidence 346899999886432 2222221 1234789999999999999996
No 444
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.71 E-value=33 Score=36.77 Aligned_cols=12 Identities=50% Similarity=0.852 Sum_probs=10.9
Q ss_pred ecccCCCCceee
Q 047843 271 YGQTGSGKTHTM 282 (648)
Q Consensus 271 YGQTGSGKTyTM 282 (648)
.|+.|+|||.|.
T Consensus 34 lG~NGAGKTTtf 45 (300)
T COG4152 34 LGPNGAGKTTTF 45 (300)
T ss_pred ecCCCCCccchH
Confidence 599999999996
No 445
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=22.64 E-value=29 Score=37.13 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.7
Q ss_pred EEEeecccCCCCceeee
Q 047843 267 CIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi 283 (648)
.|+-.|.+|||||.++-
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 57889999999999873
No 446
>PLN02796 D-glycerate 3-kinase
Probab=22.57 E-value=20 Score=39.58 Aligned_cols=15 Identities=33% Similarity=0.344 Sum_probs=12.1
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|---|.+|||||+.+
T Consensus 103 IGI~G~sGSGKSTLa 117 (347)
T PLN02796 103 IGISAPQGCGKTTLV 117 (347)
T ss_pred EEEECCCCCcHHHHH
Confidence 444599999999886
No 447
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=22.42 E-value=39 Score=36.27 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=13.0
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|+||||||.-.
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999775
No 448
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=22.40 E-value=43 Score=32.61 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.9
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.+|+-.|.+|||||..+
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 46889999999999886
No 449
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.34 E-value=4.6e+02 Score=28.41 Aligned_cols=13 Identities=38% Similarity=0.587 Sum_probs=6.7
Q ss_pred hhHHHhhhhhccc
Q 047843 54 PMLLLHKALCNIV 66 (648)
Q Consensus 54 ~~~~~~~~~~~~~ 66 (648)
||+++..|.|...
T Consensus 68 P~Lely~~~c~EL 80 (325)
T PF08317_consen 68 PMLELYQFSCREL 80 (325)
T ss_pred hHHHHHHHHHHHH
Confidence 4555555555433
No 450
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=22.23 E-value=24 Score=31.06 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=11.7
Q ss_pred eeeEEEEcCCCcccC
Q 047843 353 SCLHLVDLAGSERVD 367 (648)
Q Consensus 353 SkL~LVDLAGSER~~ 367 (648)
-.+.|+|++|-+...
T Consensus 45 ~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 45 GPVVLIDTPGIDEAG 59 (163)
T ss_pred CcEEEEECCCCCccc
Confidence 468999999977643
No 451
>PRK01184 hypothetical protein; Provisional
Probab=22.21 E-value=37 Score=32.77 Aligned_cols=15 Identities=40% Similarity=0.403 Sum_probs=12.8
Q ss_pred EEEeecccCCCCcee
Q 047843 267 CIFAYGQTGSGKTHT 281 (648)
Q Consensus 267 ~IfAYGQTGSGKTyT 281 (648)
.|+-.|..|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999985
No 452
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.14 E-value=8.4e+02 Score=29.77 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=15.6
Q ss_pred hhhhhHHHHHhHHhhhhhhhcCCCe
Q 047843 167 ALGYHRVVNENRKLYNMVQDLRGNI 191 (648)
Q Consensus 167 ~~~~~~~~~err~l~N~l~elkGnI 191 (648)
+.+|.++.+..+.|.++++.+...+
T Consensus 599 aeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 599 AERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666777666665544
No 453
>PRK05480 uridine/cytidine kinase; Provisional
Probab=22.12 E-value=37 Score=33.59 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=13.4
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|.--|.+|||||+..
T Consensus 7 ~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 34666799999999774
No 454
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.12 E-value=50 Score=37.93 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=23.4
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcC-cceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdG-yN~~IfAYGQTGSGKTyTM 282 (648)
.|+.|. .|+.+...+...+. .| ..-.++-||+.|+|||++.
T Consensus 14 ~f~dii----Gq~~i~~~L~~~i~---~~~i~hayLf~Gp~G~GKTtlA 55 (486)
T PRK14953 14 FFKEVI----GQEIVVRILKNAVK---LQRVSHAYIFAGPRGTGKTTIA 55 (486)
T ss_pred cHHHcc----ChHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 345444 35555554333332 23 2334555999999998775
No 455
>PRK14528 adenylate kinase; Provisional
Probab=22.00 E-value=39 Score=33.28 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.1
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|+.|||||+..
T Consensus 4 i~i~G~pGsGKtt~a 18 (186)
T PRK14528 4 IIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999874
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=21.96 E-value=55 Score=37.30 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=21.0
Q ss_pred HHHHHHcC---cceEEEeecccCCCCceee
Q 047843 256 LIRSVMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
=+|.++.| .+.+++-+|.+|||||.-.
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la 38 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFS 38 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHH
Confidence 35777765 3788999999999999543
No 457
>PRK02362 ski2-like helicase; Provisional
Probab=21.96 E-value=53 Score=39.33 Aligned_cols=21 Identities=43% Similarity=0.441 Sum_probs=16.0
Q ss_pred HHcCcceEEEeecccCCCCceee
Q 047843 260 VMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 260 vLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+++|.|+. ...+||||||..-
T Consensus 36 ~~~g~nvl--v~APTGSGKTlia 56 (737)
T PRK02362 36 LLDGKNLL--AAIPTASGKTLIA 56 (737)
T ss_pred HhCCCcEE--EECCCcchHHHHH
Confidence 56787754 4569999999873
No 458
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=21.93 E-value=4.7e+02 Score=27.44 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLH---SDLEDLGNQVQEMS 164 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~---~~~~~~~~~~~e~~ 164 (648)
..+.++.-+.-|.+++.....+..|......+|+ .|+..++.-+.+..
T Consensus 23 e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~ 73 (230)
T PF10146_consen 23 EVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAE 73 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666555555555554442 45555555444443
No 459
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=21.90 E-value=34 Score=41.74 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.5
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
++-.+..|+||||||+.|
T Consensus 456 ~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445788999999999998
No 460
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.84 E-value=1.3e+02 Score=23.70 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=7.1
Q ss_pred HHHHhHHhhhhhhhcCC
Q 047843 173 VVNENRKLYNMVQDLRG 189 (648)
Q Consensus 173 ~~~err~l~N~l~elkG 189 (648)
...++..|..+++.+++
T Consensus 24 L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 24 LKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 461
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.74 E-value=46 Score=39.14 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=17.8
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|..++.. + ..+-.|..|+|||||+
T Consensus 153 A~~~al~~-~-~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 153 AVALALKS-N-FSLITGGPGTGKTTTV 177 (586)
T ss_pred HHHHHhhC-C-eEEEEcCCCCCHHHHH
Confidence 45566653 3 3455799999999997
No 462
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=21.68 E-value=42 Score=33.28 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
..+-+|++|||||-.+
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4567899999999765
No 463
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.67 E-value=7.9e+02 Score=27.54 Aligned_cols=47 Identities=21% Similarity=0.189 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047843 122 QMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAAL 168 (648)
Q Consensus 122 ~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~ 168 (648)
+...+.++.+...+...+.|+++-.+++....+.|++++..++....
T Consensus 224 eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 224 EEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33334444555555555666666667777777777777777765543
No 464
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=21.47 E-value=39 Score=38.90 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=19.1
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeeee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi~ 284 (648)
+.-.+.-|.| +|-||+.|||||...-+
T Consensus 191 leiAAAGgHn--Ll~~GpPGtGKTmla~R 217 (490)
T COG0606 191 LEIAAAGGHN--LLLVGPPGTGKTMLASR 217 (490)
T ss_pred HHHHHhcCCc--EEEecCCCCchHHhhhh
Confidence 4444455555 57899999999987543
No 465
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.46 E-value=60 Score=39.05 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=25.7
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
+||.|+| |+.+-+ .+...+-.|. .-.++-||+.|+|||.+.
T Consensus 13 tFddVIG----Qe~vv~---~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVG----QNHVSR---ALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcC----cHHHHH---HHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5777776 444422 2233333443 356788999999999876
No 466
>PRK05541 adenylylsulfate kinase; Provisional
Probab=21.46 E-value=42 Score=32.23 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||...
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677999999998774
No 467
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=21.41 E-value=4.5e+02 Score=28.40 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhcCC
Q 047843 126 KELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRG 189 (648)
Q Consensus 126 ~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~elkG 189 (648)
+.|.++-..+..+-.++-+++.+|...+++....++.+...-...+...+.|++|.++|+.++-
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~ 159 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKLKY 159 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHh
Confidence 4577777888888888888888888888888877777776666677777788899999988763
No 468
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=21.38 E-value=45 Score=27.56 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=11.8
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|..|||||..+
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999998775
No 469
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=21.35 E-value=60 Score=31.56 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHcC-cceEEEeecccCCCCceee
Q 047843 258 RSVMDG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 258 ~svLdG-yN~~IfAYGQTGSGKTyTM 282 (648)
+.+-.| ...+++-||+.|+|||..+
T Consensus 6 ~~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 6 RALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 334455 4467888999999999876
No 470
>PHA00276 phage lambda Rz-like lysis protein
Probab=21.30 E-value=6.4e+02 Score=24.85 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=12.9
Q ss_pred CCCeEEEEEeCCCCc
Q 047843 188 RGNIRVYCRVRPSFR 202 (648)
Q Consensus 188 kGnIRV~vRVRP~~~ 202 (648)
.||+|+-||++|...
T Consensus 81 sGn~RLqvr~~a~s~ 95 (144)
T PHA00276 81 SDNKRLRVRLKPTSG 95 (144)
T ss_pred cCCceEEeeeecccc
Confidence 599999999999744
No 471
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=21.22 E-value=39 Score=32.85 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|..|||||+..
T Consensus 2 i~itG~~gsGKst~~ 16 (179)
T cd02022 2 IGLTGGIGSGKSTVA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999774
No 472
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=21.20 E-value=50 Score=30.33 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.1
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.-|.-.|.+|+|||.-+
T Consensus 2 ~ki~v~G~~~~GKSsli 18 (163)
T cd01860 2 FKLVLLGDSSVGKSSLV 18 (163)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999775
No 473
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=21.18 E-value=33 Score=30.97 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|...|.+|+|||..+
T Consensus 2 i~l~G~~g~GKTtL~ 16 (170)
T cd01876 2 IAFAGRSNVGKSSLI 16 (170)
T ss_pred EEEEcCCCCCHHHHH
Confidence 456799999999876
No 474
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=21.14 E-value=56 Score=42.89 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=36.1
Q ss_pred cceEEEeecccCCCCceeeeecccCCCCcccCCCcEEEecCHHHHHHHHHhh
Q 047843 264 YNVCIFAYGQTGSGKTHTMIRSCASENGLNLPDATMHSVKSTADVLQLMKLG 315 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G 315 (648)
-+-|+|-+|+.|||||--|.+...+..-+.|.++..-..++...++..|.+.
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~ 1544 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERE 1544 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhh
Confidence 4678899999999999998665554444555555555566666666666543
No 475
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=21.10 E-value=44 Score=32.83 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=12.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+|-+|.+|||||.--
T Consensus 2 ~li~G~~~sGKS~~a 16 (169)
T cd00544 2 ILVTGGARSGKSRFA 16 (169)
T ss_pred EEEECCCCCCHHHHH
Confidence 577999999999653
No 476
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=21.06 E-value=84 Score=40.58 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=27.1
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM 282 (648)
-||.-+...-..++ +|-|-||+--|.+|+|||-+-
T Consensus 134 HvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe~a 169 (1463)
T COG5022 134 HVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENA 169 (1463)
T ss_pred hHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46665555555555 788999999999999999653
No 477
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=21.05 E-value=72 Score=34.94 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=22.0
Q ss_pred HHHHHHHHc--Cc--ceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMD--GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLd--Gy--N~~IfAYGQTGSGKTyTM 282 (648)
.+-++.+|. |+ ...+.-||++|||||...
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 456788887 44 346779999999999665
No 478
>PRK13946 shikimate kinase; Provisional
Probab=21.00 E-value=42 Score=32.80 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.1
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
.-+|+..|..|||||+.-
T Consensus 10 ~~~I~l~G~~GsGKsti~ 27 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVG 27 (184)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346899999999999874
No 479
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=20.96 E-value=41 Score=40.88 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=28.1
Q ss_pred ChhhHHhch-HHHHHHHH-cCcceEEEeecccCCCCceeee
Q 047843 245 TQDDVFKDT-QPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 245 sQeeVf~~v-~plV~svL-dGyN~~IfAYGQTGSGKTyTMi 283 (648)
-|.|-|+-. ..++..+. +|.++||+|-++ |+|||+-+|
T Consensus 242 HQ~EG~~FL~knl~g~~~~~~~~GCImAd~~-GlGKTlq~I 281 (776)
T KOG0390|consen 242 HQREGFEFLYKNLAGLIRPKNSGGCIMADEP-GLGKTLQCI 281 (776)
T ss_pred hHHHHHHHHHhhhhcccccCCCCceEeeCCC-CcchHHHHH
Confidence 477777765 44444444 599999999874 999999874
No 480
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=20.96 E-value=3.2e+02 Score=32.70 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhcCCCeEE
Q 047843 126 KELVDLKDLLSRTKKEFKDLELQLH---SDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRV 193 (648)
Q Consensus 126 ~~l~~Lk~~~~~~~~e~~~l~~~~~---~~~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~elkGnIRV 193 (648)
..+..|...+..+-.|++++...+. ..+..+...++.++....+.+.....++.|+|+|+.+-+.+.|
T Consensus 30 ~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i 100 (701)
T PF09763_consen 30 KQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSI 100 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCC
Confidence 3455666666666666666665444 3456666667777777777777777788899999988776643
No 481
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=20.94 E-value=48 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=18.4
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
-+...+.| . +++-.||+|.|||..+
T Consensus 28 ~l~~~l~~-k-~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 28 ELKELLKG-K-TSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHTT-S-EEEEECSTTSSHHHHH
T ss_pred HHHHHhcC-C-EEEEECCCCCCHHHHH
Confidence 45667777 4 4455699999999875
No 482
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=20.91 E-value=68 Score=32.06 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=18.5
Q ss_pred HHHHHc-Cc--ceEEEeecccCCCCceee
Q 047843 257 IRSVMD-GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLd-Gy--N~~IfAYGQTGSGKTyTM 282 (648)
++.++. |+ ...++-+|.+|+|||.-.
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 566664 43 456666899999998764
No 483
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.91 E-value=4.3e+02 Score=32.34 Aligned_cols=13 Identities=8% Similarity=0.212 Sum_probs=6.1
Q ss_pred chhHHHhhhhhcc
Q 047843 53 EPMLLLHKALCNI 65 (648)
Q Consensus 53 ~~~~~~~~~~~~~ 65 (648)
..+.++|-.+.|.
T Consensus 403 ~sLvLlDE~g~Gt 415 (771)
T TIGR01069 403 NSLVLFDELGAGT 415 (771)
T ss_pred CcEEEecCCCCCC
Confidence 3445555544443
No 484
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=20.91 E-value=97 Score=30.07 Aligned_cols=48 Identities=27% Similarity=0.358 Sum_probs=27.9
Q ss_pred EEeecccCCCCceeeeec---c-----------cC-CCCcccCCCcEEEecCHHHHHHHHHhhh
Q 047843 268 IFAYGQTGSGKTHTMIRS---C-----------AS-ENGLNLPDATMHSVKSTADVLQLMKLGE 316 (648)
Q Consensus 268 IfAYGQTGSGKTyTMi~~---~-----------~~-~~g~~V~~lt~~~V~S~eevl~lL~~G~ 316 (648)
|.-.|++|||||.-+-.. . .. ..--.+.|...+.| |.+++.+++..|.
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fv-s~~~f~~~~~~~~ 67 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFV-SKEEFERMIKAGE 67 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE---HHHHHHHHHTTH
T ss_pred EEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEE-eechhhhhhcccc
Confidence 445799999999776111 0 00 11113445556666 8999999888775
No 485
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=20.86 E-value=57 Score=40.15 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=19.8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+|..+++|.+. ++.--+||||||..|
T Consensus 22 ~~i~~il~G~~~-v~~~apTGSGKTaa~ 48 (844)
T TIGR02621 22 SLAERFVAGQPP-ESCSTPTGLGKTSII 48 (844)
T ss_pred HHHHHHHcCCCc-ceEecCCCCcccHHH
Confidence 456678899864 444569999999854
No 486
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.86 E-value=3.2e+02 Score=31.68 Aligned_cols=31 Identities=6% Similarity=0.132 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLEL 147 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~ 147 (648)
.+..+.+++....+|+..|+.++.|++.+..
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~sa 97 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNK 97 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566666666666666666666554433
No 487
>KOG0987 consensus DNA helicase PIF1/RRM3 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.84 E-value=72 Score=37.09 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=25.1
Q ss_pred CChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 244 ATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 244 asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..||+. ++..+.+..-...| ||.-|+||||-.
T Consensus 120 ~eqk~v~d~---~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 120 PEQKRVYDA---ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred HHHHHHHHH---HHHHHhccccceee-eccCCccceeeH
Confidence 467778773 34455555556667 999999999975
No 488
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=20.80 E-value=43 Score=33.21 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=11.7
Q ss_pred EEeecccCCCCcee
Q 047843 268 IFAYGQTGSGKTHT 281 (648)
Q Consensus 268 IfAYGQTGSGKTyT 281 (648)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999865
No 489
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=20.70 E-value=62 Score=37.83 Aligned_cols=41 Identities=29% Similarity=0.511 Sum_probs=25.1
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcC-cceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdG-yN~~IfAYGQTGSGKTyTM 282 (648)
+||.|.| |+.|.+.....+. .| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~~viG----q~~v~~~L~~~i~---~~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 14 TFEDVVG----QEHITKTLKNAIK---QGKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred cHHhccC----cHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHH
Confidence 4666654 6666555433333 23 2333455999999999876
No 490
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=20.61 E-value=94 Score=33.36 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=18.4
Q ss_pred cCcceEEEeecccCCCCcee
Q 047843 262 DGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyT 281 (648)
.||.--|+..||+|.|||..
T Consensus 43 ~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred ccCceEEEEEecCCCCchhh
Confidence 79999999999999999854
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=20.54 E-value=35 Score=32.93 Aligned_cols=14 Identities=36% Similarity=0.425 Sum_probs=11.5
Q ss_pred EeecccCCCCceee
Q 047843 269 FAYGQTGSGKTHTM 282 (648)
Q Consensus 269 fAYGQTGSGKTyTM 282 (648)
.-.|.+|||||+.+
T Consensus 3 ~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 3 QIVGPKNSGKTTLI 16 (155)
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999886
No 492
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=20.45 E-value=59 Score=39.06 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=21.6
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+++-+..+....++-||++|+|||+..
T Consensus 192 ~~~~~~L~~~~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 192 ERTIQVLCRRKKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34565555555666788999999999986
No 493
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=20.45 E-value=41 Score=32.40 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=17.0
Q ss_pred HHHHHcCcc---eEEEeecccCCCCceee
Q 047843 257 IRSVMDGYN---VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGyN---~~IfAYGQTGSGKTyTM 282 (648)
++.++.|+- .-++-+|++|+|||+.+
T Consensus 21 ~~~li~g~~~~g~l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 21 LDWLIDGLLPRGELTLIAGPPGSGKTTLA 49 (193)
T ss_dssp --EEETTEE-TTSEEEEEECSTSSHHHHH
T ss_pred cceeECCcccCCeEEEEEeCCCCCHHHHH
Confidence 444444442 24567899999999987
No 494
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=20.43 E-value=84 Score=34.03 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.4
Q ss_pred HHHHHHcC-c--ceEEEeecccCCCCceee
Q 047843 256 LIRSVMDG-Y--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdG-y--N~~IfAYGQTGSGKTyTM 282 (648)
-+|.+|.| + ...+.-||..|||||.-+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 35666665 2 345568999999999765
No 495
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.43 E-value=35 Score=39.27 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=11.3
Q ss_pred eecccCCCCceee
Q 047843 270 AYGQTGSGKTHTM 282 (648)
Q Consensus 270 AYGQTGSGKTyTM 282 (648)
-+|.||||||-++
T Consensus 2 L~g~TGsGKT~v~ 14 (505)
T TIGR00595 2 LFGVTGSGKTEVY 14 (505)
T ss_pred ccCCCCCCHHHHH
Confidence 4799999999876
No 496
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.40 E-value=60 Score=40.31 Aligned_cols=41 Identities=22% Similarity=0.361 Sum_probs=25.9
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcC-cceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdG-yN~~IfAYGQTGSGKTyTM 282 (648)
+||.|.| |+.|...++..+ -.| ..-.++-||+.|+|||.+.
T Consensus 14 tFddIIG----Qe~Iv~~LknaI---~~~rl~HAyLFtGPpGtGKTTLA 55 (944)
T PRK14949 14 TFEQMVG----QSHVLHALTNAL---TQQRLHHAYLFTGTRGVGKTSLA 55 (944)
T ss_pred CHHHhcC----cHHHHHHHHHHH---HhCCCCeEEEEECCCCCCHHHHH
Confidence 5677665 555554433222 233 3445678999999999876
No 497
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=20.36 E-value=54 Score=37.97 Aligned_cols=41 Identities=22% Similarity=0.301 Sum_probs=25.0
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
+||.+.+ |+.+...+ ...+..|- .-.++-||+.|+|||.+.
T Consensus 19 ~f~dliG----q~~vv~~L---~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 19 NFAELQG----QEVLVKVL---SYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred CHHHhcC----cHHHHHHH---HHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 3555443 55554432 22233443 347888999999999986
No 498
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=20.32 E-value=38 Score=33.24 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.+.-.|.+|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999876
No 499
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=20.20 E-value=48 Score=33.95 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=0.0
Q ss_pred ceEEEeecccCCCCce
Q 047843 265 NVCIFAYGQTGSGKTH 280 (648)
Q Consensus 265 N~~IfAYGQTGSGKTy 280 (648)
..++.-+|++|+|||+
T Consensus 24 g~~~~i~G~~G~GKTt 39 (230)
T PRK08533 24 GSLILIEGDESTGKSI 39 (230)
T ss_pred CcEEEEECCCCCCHHH
No 500
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=20.15 E-value=43 Score=33.08 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=0.0
Q ss_pred eEEEeecccCCCCce
Q 047843 266 VCIFAYGQTGSGKTH 280 (648)
Q Consensus 266 ~~IfAYGQTGSGKTy 280 (648)
...+-+|..||||||
T Consensus 1 mI~~~~G~pGsGKS~ 15 (193)
T PF05707_consen 1 MIYLITGKPGSGKSY 15 (193)
T ss_dssp -EEEEE--TTSSHHH
T ss_pred CEEEEEcCCCCcHhH
Done!