Query 047843
Match_columns 648
No_of_seqs 444 out of 2084
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:48:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047843.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047843hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 1.3E-80 4.3E-85 670.8 31.0 289 168-458 38-402 (403)
2 3u06_A Protein claret segregat 100.0 3.3E-79 1.1E-83 661.2 31.0 290 169-462 39-391 (412)
3 3cob_A Kinesin heavy chain-lik 100.0 7.1E-77 2.4E-81 635.0 24.8 294 185-482 1-355 (369)
4 2rep_A Kinesin-like protein KI 100.0 2.5E-76 8.4E-81 632.2 22.9 276 178-453 11-376 (376)
5 3t0q_A AGR253WP; kinesin, alph 100.0 6E-76 2E-80 623.9 22.0 270 186-457 2-348 (349)
6 2h58_A Kinesin-like protein KI 100.0 8.9E-75 3E-79 610.9 25.8 266 186-455 1-330 (330)
7 3b6u_A Kinesin-like protein KI 100.0 2.8E-75 9.6E-80 623.2 22.0 281 182-462 14-362 (372)
8 2vvg_A Kinesin-2; motor protei 100.0 9.3E-75 3.2E-79 615.0 24.2 274 188-461 3-343 (350)
9 1f9v_A Kinesin-like protein KA 100.0 7E-75 2.4E-79 615.4 22.3 270 187-458 1-346 (347)
10 3lre_A Kinesin-like protein KI 100.0 4.8E-75 1.6E-79 618.3 20.9 272 180-453 1-355 (355)
11 2y65_A Kinesin, kinesin heavy 100.0 1.3E-74 4.5E-79 616.9 21.1 284 185-477 7-359 (365)
12 1x88_A Kinesin-like protein KI 100.0 9.5E-75 3.2E-79 616.8 17.8 276 185-460 4-357 (359)
13 3bfn_A Kinesin-like protein KI 100.0 3.4E-74 1.2E-78 617.4 19.5 279 181-462 13-356 (388)
14 1v8k_A Kinesin-like protein KI 100.0 7.4E-74 2.5E-78 618.4 21.0 286 166-457 49-406 (410)
15 1bg2_A Kinesin; motor protein, 100.0 1E-73 3.6E-78 601.7 20.1 259 185-453 3-325 (325)
16 2heh_A KIF2C protein; kinesin, 100.0 1.5E-73 5.2E-78 612.3 20.6 283 168-456 31-385 (387)
17 3nwn_A Kinesin-like protein KI 100.0 1.4E-73 4.8E-78 607.8 19.7 266 186-453 21-359 (359)
18 1t5c_A CENP-E protein, centrom 100.0 5.6E-73 1.9E-77 601.2 22.8 267 188-463 3-338 (349)
19 1goj_A Kinesin, kinesin heavy 100.0 7.5E-73 2.6E-77 601.4 23.7 269 187-461 4-338 (355)
20 2owm_A Nckin3-434, related to 100.0 4.3E-73 1.5E-77 618.3 21.6 276 184-461 33-421 (443)
21 2wbe_C Bipolar kinesin KRP-130 100.0 3.7E-73 1.3E-77 607.3 19.8 276 184-462 18-370 (373)
22 2zfi_A Kinesin-like protein KI 100.0 9.3E-73 3.2E-77 602.9 21.6 269 188-459 3-360 (366)
23 2nr8_A Kinesin-like protein KI 100.0 1.3E-72 4.3E-77 600.3 20.2 270 182-453 16-358 (358)
24 4a14_A Kinesin, kinesin-like p 100.0 2.8E-72 9.5E-77 594.7 22.5 256 188-451 10-344 (344)
25 1ry6_A Internal kinesin; kines 100.0 3.4E-71 1.2E-75 589.7 22.3 268 190-460 1-338 (360)
26 3gbj_A KIF13B protein; kinesin 100.0 4.9E-71 1.7E-75 587.3 21.7 262 189-452 1-349 (354)
27 3dc4_A Kinesin-like protein NO 100.0 5.8E-71 2E-75 584.8 21.9 274 170-458 5-340 (344)
28 4h1g_A Maltose binding protein 100.0 8.8E-69 3E-73 613.2 25.6 277 178-455 363-713 (715)
29 2kin_B Kinesin; motor protein, 99.9 3.7E-29 1.3E-33 222.4 4.3 85 379-463 1-86 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 2.3E-27 7.9E-32 216.4 8.7 105 383-487 1-111 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 4.4E-24 1.5E-28 219.5 9.0 236 169-456 4-292 (298)
32 4etp_B Spindle POLE BODY-assoc 98.1 5.9E-05 2E-09 78.9 15.2 94 172-275 42-138 (333)
33 3ec2_A DNA replication protein 95.0 0.0037 1.3E-07 58.2 -0.2 50 233-282 6-55 (180)
34 2w58_A DNAI, primosome compone 94.3 0.0095 3.2E-07 56.2 0.6 50 233-282 21-71 (202)
35 2qgz_A Helicase loader, putati 92.6 0.027 9.3E-07 58.0 0.8 49 234-282 121-169 (308)
36 4b4t_K 26S protease regulatory 87.6 1 3.5E-05 49.0 7.7 50 233-282 168-223 (428)
37 3uk6_A RUVB-like 2; hexameric 87.4 0.24 8.1E-06 50.8 2.5 46 233-282 40-87 (368)
38 4gkp_A Spindle POLE BODY-assoc 87.2 1.1 3.9E-05 46.1 7.3 89 180-278 4-95 (275)
39 3bos_A Putative DNA replicatio 87.1 0.17 5.8E-06 47.8 1.2 45 234-282 25-69 (242)
40 2bjv_A PSP operon transcriptio 86.7 0.15 5.3E-06 50.1 0.6 45 233-282 2-46 (265)
41 4b4t_M 26S protease regulatory 85.6 1.2 4E-05 48.6 6.9 50 233-282 177-232 (434)
42 1jbk_A CLPB protein; beta barr 85.3 0.32 1.1E-05 43.7 1.9 29 254-282 32-60 (195)
43 1l8q_A Chromosomal replication 85.1 0.27 9.4E-06 49.8 1.5 48 233-282 7-54 (324)
44 3h4m_A Proteasome-activating n 84.2 0.33 1.1E-05 48.0 1.6 51 232-282 12-68 (285)
45 1g8p_A Magnesium-chelatase 38 83.8 0.29 1E-05 49.5 1.0 45 231-282 18-62 (350)
46 1d2n_A N-ethylmaleimide-sensit 83.5 0.38 1.3E-05 47.5 1.7 21 262-282 61-81 (272)
47 2p65_A Hypothetical protein PF 83.5 0.36 1.2E-05 43.5 1.4 29 254-282 32-60 (187)
48 1qde_A EIF4A, translation init 82.3 0.5 1.7E-05 44.8 2.0 26 255-282 43-68 (224)
49 2r62_A Cell division protease 82.3 0.34 1.2E-05 47.5 0.9 50 233-282 7-61 (268)
50 2v1u_A Cell division control p 81.5 0.29 1E-05 49.7 0.0 39 244-282 22-61 (387)
51 1vec_A ATP-dependent RNA helic 81.5 0.68 2.3E-05 43.2 2.5 26 255-282 32-57 (206)
52 2gxq_A Heat resistant RNA depe 81.3 0.6 2E-05 43.5 2.1 25 256-282 31-55 (207)
53 2kjq_A DNAA-related protein; s 80.8 0.33 1.1E-05 44.6 0.1 41 233-282 13-53 (149)
54 1fnn_A CDC6P, cell division co 79.4 0.62 2.1E-05 47.5 1.6 39 244-282 20-61 (389)
55 4b4t_L 26S protease subunit RP 79.4 2.7 9.4E-05 45.8 6.8 50 233-282 177-232 (437)
56 2qz4_A Paraplegin; AAA+, SPG7, 79.4 0.96 3.3E-05 43.7 2.9 44 235-282 4-56 (262)
57 3syl_A Protein CBBX; photosynt 79.4 0.88 3E-05 45.3 2.7 20 263-282 65-84 (309)
58 3te6_A Regulatory protein SIR3 79.3 0.58 2E-05 48.9 1.3 30 253-282 32-62 (318)
59 1ixz_A ATP-dependent metallopr 79.2 0.44 1.5E-05 46.5 0.4 46 233-282 12-66 (254)
60 3dkp_A Probable ATP-dependent 79.2 0.76 2.6E-05 44.4 2.1 26 255-282 58-83 (245)
61 2z4s_A Chromosomal replication 79.2 0.61 2.1E-05 50.3 1.5 48 232-282 100-147 (440)
62 3bor_A Human initiation factor 79.0 0.49 1.7E-05 45.8 0.6 26 255-282 59-84 (237)
63 2c9o_A RUVB-like 1; hexameric 78.8 0.87 3E-05 49.1 2.6 46 233-282 33-80 (456)
64 3t15_A Ribulose bisphosphate c 77.9 0.75 2.6E-05 46.6 1.7 17 266-282 37-53 (293)
65 4b4t_J 26S protease regulatory 77.7 4.3 0.00015 43.9 7.6 49 234-282 145-199 (405)
66 2pl3_A Probable ATP-dependent 77.4 0.92 3.1E-05 43.5 2.1 26 255-282 54-79 (236)
67 3iuy_A Probable ATP-dependent 76.7 0.97 3.3E-05 43.1 2.0 26 255-282 49-74 (228)
68 1t6n_A Probable ATP-dependent 76.1 1.1 3.6E-05 42.5 2.1 26 255-282 43-68 (220)
69 2chg_A Replication factor C sm 75.9 0.81 2.8E-05 42.0 1.2 20 263-282 36-55 (226)
70 3co5_A Putative two-component 75.8 1.3 4.4E-05 39.8 2.5 35 247-282 10-44 (143)
71 3ly5_A ATP-dependent RNA helic 75.4 0.81 2.8E-05 45.3 1.1 26 255-282 83-108 (262)
72 3cf0_A Transitional endoplasmi 75.4 0.67 2.3E-05 46.9 0.5 50 233-282 11-66 (301)
73 1wrb_A DJVLGB; RNA helicase, D 75.1 1.1 3.9E-05 43.4 2.0 26 255-282 52-77 (253)
74 3b6e_A Interferon-induced heli 74.7 0.65 2.2E-05 43.2 0.2 25 256-282 41-65 (216)
75 1lv7_A FTSH; alpha/beta domain 74.1 1.4 4.7E-05 43.0 2.3 46 233-282 8-62 (257)
76 3eiq_A Eukaryotic initiation f 74.0 1.4 4.6E-05 45.3 2.4 26 255-282 69-94 (414)
77 2qby_B CDC6 homolog 3, cell di 73.6 1.1 3.7E-05 45.8 1.5 38 245-282 24-62 (384)
78 1sxj_C Activator 1 40 kDa subu 73.4 1 3.4E-05 46.1 1.2 41 235-282 23-63 (340)
79 3fe2_A Probable ATP-dependent 73.2 1.2 4.1E-05 43.1 1.7 25 256-282 59-83 (242)
80 1p9r_A General secretion pathw 73.0 1.4 4.7E-05 47.6 2.2 28 255-282 157-184 (418)
81 3fmo_B ATP-dependent RNA helic 72.8 1.2 4.2E-05 45.2 1.7 28 255-282 121-148 (300)
82 2oxc_A Probable ATP-dependent 72.6 1.4 4.9E-05 42.2 2.0 26 255-282 53-78 (230)
83 1iy2_A ATP-dependent metallopr 72.6 0.82 2.8E-05 45.4 0.3 47 232-282 35-90 (278)
84 3b9p_A CG5977-PA, isoform A; A 71.9 1.4 4.9E-05 43.6 1.9 46 233-282 17-71 (297)
85 3ber_A Probable ATP-dependent 71.8 1.5 5.2E-05 42.9 2.1 26 255-282 72-97 (249)
86 1w9i_A Myosin II heavy chain; 71.2 5.9 0.0002 46.2 7.0 83 248-342 154-248 (770)
87 3jvv_A Twitching mobility prot 71.2 1.4 4.8E-05 46.5 1.8 27 256-282 114-140 (356)
88 1hqc_A RUVB; extended AAA-ATPa 71.2 1.7 5.8E-05 43.4 2.3 44 235-282 10-55 (324)
89 1w7j_A Myosin VA; motor protei 70.8 8.4 0.00029 45.1 8.2 81 248-342 138-229 (795)
90 3pfi_A Holliday junction ATP-d 70.7 2 6.7E-05 43.5 2.7 44 235-282 27-72 (338)
91 1q0u_A Bstdead; DEAD protein, 70.6 1 3.5E-05 42.7 0.5 25 256-282 34-58 (219)
92 2qby_A CDC6 homolog 1, cell di 70.5 0.86 2.9E-05 46.1 -0.1 37 246-282 25-62 (386)
93 3llm_A ATP-dependent RNA helic 70.4 1.4 4.9E-05 42.6 1.5 26 255-282 68-93 (235)
94 4fcw_A Chaperone protein CLPB; 69.8 2.3 7.9E-05 42.2 2.9 38 245-282 21-64 (311)
95 1njg_A DNA polymerase III subu 69.5 1.9 6.6E-05 39.8 2.1 17 266-282 46-62 (250)
96 1g8x_A Myosin II heavy chain f 68.9 7.4 0.00025 46.7 7.4 83 248-342 154-248 (1010)
97 2dfs_A Myosin-5A; myosin-V, in 68.8 6.7 0.00023 47.4 7.0 92 249-356 139-240 (1080)
98 3fht_A ATP-dependent RNA helic 68.6 1.9 6.4E-05 44.1 2.0 28 255-282 54-81 (412)
99 1w5s_A Origin recognition comp 68.4 2 6.7E-05 44.2 2.1 35 248-282 29-69 (412)
100 1lkx_A Myosin IE heavy chain; 68.2 8.2 0.00028 44.5 7.3 83 248-342 76-169 (697)
101 3n70_A Transport activator; si 67.9 2.4 8.2E-05 38.0 2.3 20 263-282 22-41 (145)
102 1iqp_A RFCS; clamp loader, ext 67.8 2.5 8.4E-05 41.9 2.6 41 235-282 23-63 (327)
103 2j0s_A ATP-dependent RNA helic 67.6 2 7E-05 44.2 2.0 26 255-282 66-91 (410)
104 3pvs_A Replication-associated 67.4 2.1 7.1E-05 46.5 2.1 44 235-282 24-67 (447)
105 3pey_A ATP-dependent RNA helic 66.9 2.1 7.3E-05 43.2 2.0 28 255-282 34-61 (395)
106 3fmp_B ATP-dependent RNA helic 66.8 2.5 8.5E-05 45.0 2.5 27 255-281 121-147 (479)
107 3vfd_A Spastin; ATPase, microt 66.7 2 6.8E-05 45.0 1.7 47 232-282 110-165 (389)
108 1gvn_B Zeta; postsegregational 66.4 4.8 0.00016 40.7 4.5 38 245-282 8-50 (287)
109 1kk8_A Myosin heavy chain, str 65.8 12 0.0004 44.2 8.0 90 248-342 151-252 (837)
110 1s2m_A Putative ATP-dependent 65.5 2.2 7.6E-05 43.6 1.8 26 255-282 50-75 (400)
111 1in4_A RUVB, holliday junction 65.3 2 6.7E-05 44.2 1.3 44 235-282 23-68 (334)
112 2ycu_A Non muscle myosin 2C, a 64.7 9.1 0.00031 45.8 7.0 88 248-342 128-226 (995)
113 3u61_B DNA polymerase accessor 64.6 2.6 9E-05 42.3 2.1 41 235-282 24-65 (324)
114 1ofh_A ATP-dependent HSL prote 64.0 2.7 9.2E-05 41.4 2.0 18 265-282 50-67 (310)
115 2z0m_A 337AA long hypothetical 64.0 2.7 9.2E-05 41.5 2.0 25 256-282 24-48 (337)
116 2fz4_A DNA repair protein RAD2 63.8 2.4 8.2E-05 41.5 1.6 27 256-284 101-127 (237)
117 1xwi_A SKD1 protein; VPS4B, AA 62.7 1.4 4.9E-05 45.2 -0.2 45 234-282 9-62 (322)
118 2i4i_A ATP-dependent RNA helic 62.6 3 0.0001 42.9 2.1 26 255-282 44-69 (417)
119 4db1_A Myosin-7; S1DC, cardiac 62.5 13 0.00043 43.6 7.5 88 249-342 154-253 (783)
120 3h1t_A Type I site-specific re 61.3 3.2 0.00011 45.6 2.2 27 256-283 190-216 (590)
121 3oiy_A Reverse gyrase helicase 61.1 3.2 0.00011 43.1 2.0 26 255-282 28-53 (414)
122 1rif_A DAR protein, DNA helica 61.0 2.4 8.2E-05 42.0 1.0 25 256-282 121-145 (282)
123 2eyu_A Twitching motility prot 61.0 2.6 8.8E-05 42.3 1.2 18 265-282 25-42 (261)
124 1jr3_A DNA polymerase III subu 61.0 3.8 0.00013 41.5 2.5 36 245-282 20-55 (373)
125 3d8b_A Fidgetin-like protein 1 60.9 3 0.0001 43.3 1.7 45 234-282 81-134 (357)
126 1tue_A Replication protein E1; 60.7 2.4 8.3E-05 42.1 1.0 27 256-282 47-75 (212)
127 1u0j_A DNA replication protein 60.4 4.2 0.00014 41.6 2.7 29 254-282 90-121 (267)
128 3fho_A ATP-dependent RNA helic 58.7 3.3 0.00011 44.9 1.7 26 257-282 150-175 (508)
129 2v26_A Myosin VI; calmodulin-b 58.7 9 0.00031 44.8 5.4 82 248-342 122-211 (784)
130 3i5x_A ATP-dependent RNA helic 58.5 4.3 0.00015 44.1 2.5 27 255-281 101-127 (563)
131 2ce7_A Cell division protein F 57.8 4.3 0.00015 44.6 2.4 46 233-282 12-66 (476)
132 2chq_A Replication factor C sm 57.7 1.9 6.7E-05 42.5 -0.3 41 235-282 15-55 (319)
133 1xti_A Probable ATP-dependent 57.4 3.8 0.00013 41.5 1.8 26 255-282 37-62 (391)
134 4a2p_A RIG-I, retinoic acid in 57.1 4.1 0.00014 43.5 2.1 25 256-282 15-39 (556)
135 2db3_A ATP-dependent RNA helic 56.1 5 0.00017 42.5 2.5 26 255-282 85-110 (434)
136 3t34_A Dynamin-related protein 56.0 23 0.00079 36.5 7.5 90 267-368 36-151 (360)
137 1fuu_A Yeast initiation factor 55.8 2.7 9.2E-05 42.6 0.4 26 255-282 50-75 (394)
138 1ojl_A Transcriptional regulat 55.8 4.4 0.00015 41.2 2.0 34 248-282 9-42 (304)
139 2ewv_A Twitching motility prot 55.7 3 0.0001 44.0 0.8 19 264-282 135-153 (372)
140 1sxj_D Activator 1 41 kDa subu 55.4 3.5 0.00012 41.4 1.1 27 256-282 49-75 (353)
141 1nrj_B SR-beta, signal recogni 55.2 5.3 0.00018 37.3 2.2 22 262-283 9-30 (218)
142 3tbk_A RIG-I helicase domain; 55.1 4.6 0.00016 42.9 2.1 25 256-282 12-36 (555)
143 1sxj_E Activator 1 40 kDa subu 55.1 1.9 6.7E-05 43.6 -0.9 42 235-282 12-53 (354)
144 2oap_1 GSPE-2, type II secreti 54.7 4.3 0.00015 44.9 1.7 19 262-282 259-277 (511)
145 3eie_A Vacuolar protein sortin 54.0 4.8 0.00016 40.9 1.9 46 233-282 14-68 (322)
146 1hv8_A Putative ATP-dependent 53.7 4.8 0.00016 40.1 1.8 26 256-282 36-61 (367)
147 4b3f_X DNA-binding protein smu 52.9 4.8 0.00016 45.3 1.8 27 255-282 196-222 (646)
148 3pxi_A Negative regulator of g 52.5 6 0.00021 45.2 2.6 38 245-282 495-538 (758)
149 2v1x_A ATP-dependent DNA helic 52.1 7.6 0.00026 43.5 3.3 25 255-281 51-75 (591)
150 3hws_A ATP-dependent CLP prote 52.1 5 0.00017 41.3 1.7 18 265-282 51-68 (363)
151 1r6b_X CLPA protein; AAA+, N-t 51.5 7.2 0.00024 44.4 3.0 37 246-282 463-505 (758)
152 2fwr_A DNA repair protein RAD2 51.1 5.2 0.00018 42.3 1.7 27 255-283 100-126 (472)
153 1qvr_A CLPB protein; coiled co 51.0 6.9 0.00024 45.5 2.8 37 246-282 563-605 (854)
154 1qvr_A CLPB protein; coiled co 50.5 4 0.00014 47.5 0.7 41 235-282 168-208 (854)
155 4gl2_A Interferon-induced heli 50.4 5.8 0.0002 44.2 2.0 26 255-282 14-39 (699)
156 1sxj_A Activator 1 95 kDa subu 50.2 4.1 0.00014 44.6 0.7 44 235-282 37-94 (516)
157 1um8_A ATP-dependent CLP prote 50.2 5 0.00017 41.5 1.3 18 265-282 72-89 (376)
158 3sqw_A ATP-dependent RNA helic 49.6 7.2 0.00025 42.9 2.5 27 255-281 50-76 (579)
159 2r44_A Uncharacterized protein 49.4 3.5 0.00012 41.6 0.0 23 258-282 41-63 (331)
160 2p5t_B PEZT; postsegregational 49.3 13 0.00043 36.4 4.0 29 254-282 16-49 (253)
161 1w36_D RECD, exodeoxyribonucle 48.8 5.8 0.0002 44.5 1.6 24 257-282 158-181 (608)
162 1sxj_B Activator 1 37 kDa subu 48.8 4.8 0.00016 39.7 0.8 41 235-282 19-59 (323)
163 1wp9_A ATP-dependent RNA helic 48.6 5.5 0.00019 40.8 1.3 25 255-282 16-40 (494)
164 3b9q_A Chloroplast SRP recepto 48.3 9.5 0.00032 39.1 3.0 17 266-282 101-117 (302)
165 2ykg_A Probable ATP-dependent 47.9 7.9 0.00027 43.1 2.5 25 256-282 21-45 (696)
166 1n0w_A DNA repair protein RAD5 47.4 6.3 0.00022 37.3 1.4 28 255-282 11-41 (243)
167 2jlq_A Serine protease subunit 47.4 4.9 0.00017 43.1 0.7 25 256-281 11-35 (451)
168 3lw7_A Adenylate kinase relate 47.3 5.4 0.00019 35.2 0.9 16 267-282 3-18 (179)
169 3e70_C DPA, signal recognition 46.4 11 0.00037 39.2 3.2 18 265-282 129-146 (328)
170 3b85_A Phosphate starvation-in 46.4 7.9 0.00027 37.5 2.0 25 256-282 15-39 (208)
171 4gp7_A Metallophosphoesterase; 45.3 5 0.00017 37.0 0.3 17 267-283 11-27 (171)
172 1c4o_A DNA nucleotide excision 45.1 9.1 0.00031 43.5 2.5 44 234-282 2-45 (664)
173 2qp9_X Vacuolar protein sortin 44.4 7.9 0.00027 40.2 1.7 17 266-282 85-101 (355)
174 2cvh_A DNA repair and recombin 44.4 7.6 0.00026 36.1 1.5 28 255-282 7-37 (220)
175 2gza_A Type IV secretion syste 44.2 6.4 0.00022 41.2 1.0 20 261-282 173-192 (361)
176 2dhr_A FTSH; AAA+ protein, hex 43.9 11 0.00036 41.7 2.7 46 233-282 27-81 (499)
177 3upu_A ATP-dependent DNA helic 43.4 7.8 0.00027 41.6 1.5 36 243-282 27-62 (459)
178 1t3j_A Mitofusin 1; coiled coi 43.3 55 0.0019 28.7 6.6 42 130-171 33-74 (96)
179 4ag6_A VIRB4 ATPase, type IV s 43.3 5 0.00017 41.9 0.0 17 266-282 36-52 (392)
180 2x8a_A Nuclear valosin-contain 43.2 5.2 0.00018 40.1 0.1 50 233-282 6-61 (274)
181 2zan_A Vacuolar protein sortin 42.9 6.1 0.00021 42.4 0.6 46 233-282 130-184 (444)
182 3pxg_A Negative regulator of g 42.7 13 0.00044 40.2 3.1 41 235-282 178-218 (468)
183 1x79_B RAB GTPase binding effe 42.7 1.7E+02 0.0058 26.3 9.9 39 126-164 13-51 (112)
184 3i00_A HIP-I, huntingtin-inter 42.3 1.9E+02 0.0066 26.1 10.3 68 117-187 13-80 (120)
185 2w0m_A SSO2452; RECA, SSPF, un 41.8 7.8 0.00027 36.1 1.1 27 256-282 11-40 (235)
186 3tr0_A Guanylate kinase, GMP k 41.8 6.1 0.00021 36.5 0.3 16 267-282 9-24 (205)
187 1e9r_A Conjugal transfer prote 41.5 5.2 0.00018 42.3 -0.2 18 265-282 53-70 (437)
188 3hu3_A Transitional endoplasmi 40.8 12 0.0004 41.1 2.5 20 263-282 236-255 (489)
189 2og2_A Putative signal recogni 40.6 15 0.00051 38.8 3.1 17 266-282 158-174 (359)
190 3swf_A CGMP-gated cation chann 40.4 1.2E+02 0.0042 25.4 7.9 48 117-164 5-52 (74)
191 1gm5_A RECG; helicase, replica 40.3 8.8 0.0003 44.7 1.4 39 241-282 368-406 (780)
192 1ly1_A Polynucleotide kinase; 40.1 8 0.00027 34.7 0.9 17 266-282 3-19 (181)
193 4a74_A DNA repair and recombin 40.0 11 0.00036 35.3 1.7 28 255-282 12-42 (231)
194 2gk6_A Regulator of nonsense t 39.9 9.8 0.00034 42.7 1.7 25 256-282 188-212 (624)
195 2oca_A DAR protein, ATP-depend 39.8 8.8 0.0003 41.0 1.2 25 257-283 122-146 (510)
196 4a2q_A RIG-I, retinoic acid in 39.7 11 0.00037 43.3 2.1 26 255-282 255-280 (797)
197 3trf_A Shikimate kinase, SK; a 39.6 8.2 0.00028 35.2 0.8 16 267-282 7-22 (185)
198 2v66_B Nuclear distribution pr 39.6 1.5E+02 0.005 26.6 8.9 23 129-151 6-28 (111)
199 3swy_A Cyclic nucleotide-gated 39.5 98 0.0033 23.7 6.6 42 118-159 4-45 (46)
200 3tau_A Guanylate kinase, GMP k 39.3 7 0.00024 37.1 0.3 16 267-282 10-25 (208)
201 2r8r_A Sensor protein; KDPD, P 39.0 6.5 0.00022 39.3 0.1 20 265-284 6-25 (228)
202 2qnr_A Septin-2, protein NEDD5 38.6 7.2 0.00025 39.7 0.3 24 259-282 12-35 (301)
203 1kgd_A CASK, peripheral plasma 38.6 7.2 0.00025 36.0 0.3 16 267-282 7-22 (180)
204 2qag_C Septin-7; cell cycle, c 38.2 7 0.00024 42.2 0.1 23 260-282 26-48 (418)
205 3lfu_A DNA helicase II; SF1 he 38.0 8.6 0.00029 42.5 0.8 19 264-282 21-39 (647)
206 1zp6_A Hypothetical protein AT 37.9 7.4 0.00025 35.6 0.2 17 266-282 10-26 (191)
207 2px0_A Flagellar biosynthesis 37.8 9 0.00031 39.1 0.9 16 267-282 107-122 (296)
208 3kl4_A SRP54, signal recogniti 37.7 16 0.00055 39.6 2.9 17 266-282 98-114 (433)
209 2v6i_A RNA helicase; membrane, 37.4 10 0.00035 40.4 1.3 16 267-282 4-19 (431)
210 4a4z_A Antiviral helicase SKI2 37.3 15 0.00053 43.7 2.9 24 256-281 47-70 (997)
211 1qhx_A CPT, protein (chloramph 37.1 9.6 0.00033 34.4 0.9 17 266-282 4-20 (178)
212 1gku_B Reverse gyrase, TOP-RG; 37.0 15 0.00051 44.0 2.7 24 255-280 63-86 (1054)
213 4anj_A Unconventional myosin-V 36.7 15 0.0005 44.4 2.5 82 248-341 126-214 (1052)
214 4a2w_A RIG-I, retinoic acid in 36.3 13 0.00045 43.8 2.1 26 255-282 255-280 (936)
215 2dr3_A UPF0273 protein PH0284; 36.1 11 0.00037 35.6 1.1 26 257-282 12-40 (247)
216 3iij_A Coilin-interacting nucl 36.1 9.3 0.00032 34.8 0.6 16 267-282 13-28 (180)
217 3sop_A Neuronal-specific septi 36.1 8.7 0.0003 38.6 0.4 19 264-282 1-19 (270)
218 2j41_A Guanylate kinase; GMP, 35.8 8.6 0.0003 35.5 0.3 16 267-282 8-23 (207)
219 3tnu_B Keratin, type II cytosk 35.7 2.4E+02 0.0082 25.2 10.3 44 120-163 44-87 (129)
220 3a00_A Guanylate kinase, GMP k 35.5 7.9 0.00027 35.9 0.0 15 268-282 4-18 (186)
221 3dm5_A SRP54, signal recogniti 35.5 18 0.00061 39.5 2.8 18 265-282 100-117 (443)
222 3tnu_A Keratin, type I cytoske 35.3 2.4E+02 0.0082 25.3 9.9 47 117-163 43-89 (131)
223 2v71_A Nuclear distribution pr 35.3 2.6E+02 0.009 27.1 10.7 51 117-167 15-65 (189)
224 1oyw_A RECQ helicase, ATP-depe 35.1 9.8 0.00034 41.7 0.7 26 255-282 32-57 (523)
225 2yhs_A FTSY, cell division pro 35.0 12 0.00042 41.6 1.4 16 267-282 295-310 (503)
226 2z83_A Helicase/nucleoside tri 34.9 11 0.00039 40.4 1.1 15 267-281 23-37 (459)
227 1lvg_A Guanylate kinase, GMP k 34.9 8 0.00027 36.5 -0.1 16 267-282 6-21 (198)
228 3pxi_A Negative regulator of g 34.9 19 0.00066 41.1 3.1 41 235-282 178-218 (758)
229 1r6b_X CLPA protein; AAA+, N-t 34.8 14 0.00047 42.1 1.8 41 235-282 184-224 (758)
230 2ehv_A Hypothetical protein PH 34.6 9.1 0.00031 36.3 0.3 16 267-282 32-47 (251)
231 4b4t_H 26S protease regulatory 34.3 9.6 0.00033 42.0 0.4 50 233-282 205-260 (467)
232 1rz3_A Hypothetical protein rb 34.3 13 0.00045 34.9 1.4 29 254-282 8-39 (201)
233 1yks_A Genome polyprotein [con 34.2 12 0.0004 40.1 1.1 20 261-282 6-25 (440)
234 2bdt_A BH3686; alpha-beta prot 33.9 9.5 0.00032 35.1 0.3 16 267-282 4-19 (189)
235 3lnc_A Guanylate kinase, GMP k 33.9 11 0.00038 35.9 0.8 16 267-282 29-44 (231)
236 1ye8_A Protein THEP1, hypothet 33.9 9.5 0.00033 35.8 0.3 15 268-282 3-17 (178)
237 3vaa_A Shikimate kinase, SK; s 33.6 12 0.0004 35.0 0.9 16 267-282 27-42 (199)
238 3rc3_A ATP-dependent RNA helic 33.2 11 0.00037 43.2 0.6 23 259-283 151-173 (677)
239 1kht_A Adenylate kinase; phosp 33.2 11 0.00039 34.0 0.7 16 267-282 5-20 (192)
240 3cve_A Homer protein homolog 1 33.2 1.7E+02 0.0058 24.3 7.7 43 125-167 20-62 (72)
241 1rj9_A FTSY, signal recognitio 32.7 11 0.00038 38.7 0.6 16 267-282 104-119 (304)
242 2pt7_A CAG-ALFA; ATPase, prote 32.3 9.2 0.00032 39.6 -0.1 19 262-282 170-188 (330)
243 1uaa_A REP helicase, protein ( 32.2 12 0.00042 42.0 0.8 19 264-282 14-32 (673)
244 2zj8_A DNA helicase, putative 31.6 12 0.00041 42.3 0.7 21 260-282 36-56 (720)
245 1znw_A Guanylate kinase, GMP k 31.4 11 0.00038 35.5 0.3 15 268-282 23-37 (207)
246 2ze6_A Isopentenyl transferase 31.4 12 0.00042 36.8 0.6 16 267-282 3-18 (253)
247 1kag_A SKI, shikimate kinase I 31.3 13 0.00044 33.4 0.7 16 267-282 6-21 (173)
248 3c8u_A Fructokinase; YP_612366 31.2 13 0.00045 35.0 0.8 18 265-282 22-39 (208)
249 3kb2_A SPBC2 prophage-derived 31.2 14 0.00047 32.8 0.9 16 267-282 3-18 (173)
250 1uf9_A TT1252 protein; P-loop, 30.9 16 0.00055 33.5 1.3 21 262-282 5-25 (203)
251 2qen_A Walker-type ATPase; unk 30.7 17 0.00057 36.1 1.5 18 266-283 32-49 (350)
252 3kta_A Chromosome segregation 30.3 11 0.00039 34.2 0.2 16 267-282 28-43 (182)
253 4b4t_I 26S protease regulatory 30.3 13 0.00044 40.7 0.6 50 233-282 178-233 (437)
254 2wjy_A Regulator of nonsense t 30.2 17 0.00059 42.3 1.7 26 255-282 363-388 (800)
255 3e1s_A Exodeoxyribonuclease V, 30.2 17 0.00057 40.7 1.5 25 256-282 197-221 (574)
256 1tev_A UMP-CMP kinase; ploop, 30.1 15 0.0005 33.3 0.9 16 267-282 5-20 (196)
257 2xzl_A ATP-dependent helicase 30.0 16 0.00055 42.5 1.4 26 255-282 367-392 (802)
258 3cvf_A Homer-3, homer protein 29.8 2.5E+02 0.0087 23.7 8.7 45 125-169 26-70 (79)
259 2p6r_A Afuhel308 helicase; pro 29.6 13 0.00044 41.9 0.5 24 257-282 34-57 (702)
260 2orw_A Thymidine kinase; TMTK, 29.5 11 0.00038 35.4 -0.0 19 267-285 5-23 (184)
261 2wt7_B Transcription factor MA 29.5 1E+02 0.0034 26.7 5.9 14 99-112 35-48 (90)
262 2i3b_A HCR-ntpase, human cance 29.5 11 0.00039 35.8 0.0 16 267-282 3-18 (189)
263 3cm0_A Adenylate kinase; ATP-b 29.4 15 0.00053 33.3 0.9 16 267-282 6-21 (186)
264 2rhm_A Putative kinase; P-loop 29.2 14 0.00047 33.6 0.5 17 266-282 6-22 (193)
265 3l9o_A ATP-dependent RNA helic 29.0 18 0.00062 43.7 1.6 24 256-281 192-215 (1108)
266 2fna_A Conserved hypothetical 29.0 15 0.0005 36.5 0.7 20 261-282 28-47 (357)
267 1j8m_F SRP54, signal recogniti 28.9 34 0.0012 34.8 3.4 16 267-282 100-115 (297)
268 3nbx_X ATPase RAVA; AAA+ ATPas 28.9 22 0.00075 39.2 2.2 25 256-282 34-58 (500)
269 3uie_A Adenylyl-sulfate kinase 28.6 19 0.00063 33.7 1.3 18 265-282 25-42 (200)
270 2qor_A Guanylate kinase; phosp 28.6 15 0.00051 34.4 0.7 16 267-282 14-29 (204)
271 4ddu_A Reverse gyrase; topoiso 28.5 22 0.00075 43.0 2.2 24 256-281 86-109 (1104)
272 2d7d_A Uvrabc system protein B 28.5 24 0.00082 40.0 2.4 46 233-282 4-49 (661)
273 2xgj_A ATP-dependent RNA helic 28.5 22 0.00074 42.6 2.1 24 256-281 94-117 (1010)
274 1z6g_A Guanylate kinase; struc 28.4 12 0.00041 35.9 -0.1 14 269-282 27-40 (218)
275 1e6c_A Shikimate kinase; phosp 28.3 15 0.00052 32.8 0.6 16 267-282 4-19 (173)
276 2xau_A PRE-mRNA-splicing facto 28.2 19 0.00065 41.7 1.6 26 256-282 101-126 (773)
277 1y63_A LMAJ004144AAA protein; 27.9 16 0.00053 33.8 0.6 16 267-282 12-27 (184)
278 1vma_A Cell division protein F 27.8 14 0.00047 38.1 0.3 17 266-282 105-121 (306)
279 3hnw_A Uncharacterized protein 27.5 3.4E+02 0.012 24.8 9.7 64 116-179 72-138 (138)
280 2vli_A Antibiotic resistance p 27.2 18 0.0006 32.7 0.9 17 266-282 6-22 (183)
281 1ypw_A Transitional endoplasmi 27.1 13 0.00043 43.3 -0.1 51 232-282 199-255 (806)
282 2v71_A Nuclear distribution pr 27.1 3.1E+02 0.011 26.7 9.6 32 121-152 51-82 (189)
283 3t5d_A Septin-7; GTP-binding p 27.0 19 0.00066 35.5 1.2 21 262-282 5-25 (274)
284 4dzn_A Coiled-coil peptide CC- 26.9 1E+02 0.0036 21.4 4.4 21 466-486 3-23 (33)
285 1knq_A Gluconate kinase; ALFA/ 26.8 18 0.00063 32.6 0.9 16 267-282 10-25 (175)
286 2qag_A Septin-2, protein NEDD5 26.7 16 0.00056 38.1 0.6 24 259-282 31-54 (361)
287 1nks_A Adenylate kinase; therm 26.7 17 0.00057 32.9 0.6 16 267-282 3-18 (194)
288 1xx6_A Thymidine kinase; NESG, 26.5 12 0.00041 35.9 -0.5 19 267-285 10-28 (191)
289 2bwj_A Adenylate kinase 5; pho 26.4 18 0.00061 33.0 0.8 16 267-282 14-29 (199)
290 1a5t_A Delta prime, HOLB; zinc 26.3 27 0.00092 35.6 2.2 34 246-282 7-41 (334)
291 2eyq_A TRCF, transcription-rep 26.2 30 0.001 42.0 2.8 22 261-282 620-641 (1151)
292 2b8t_A Thymidine kinase; deoxy 26.2 15 0.0005 36.3 0.1 19 266-284 13-31 (223)
293 2bbw_A Adenylate kinase 4, AK4 26.1 15 0.00053 35.4 0.3 17 266-282 28-44 (246)
294 3o0z_A RHO-associated protein 26.1 3.6E+02 0.012 25.8 9.7 21 167-187 110-130 (168)
295 2iyv_A Shikimate kinase, SK; t 26.1 18 0.0006 33.0 0.6 15 267-281 4-18 (184)
296 4emc_A Monopolin complex subun 25.9 4.7E+02 0.016 25.5 11.1 81 120-212 21-101 (190)
297 3asz_A Uridine kinase; cytidin 25.6 16 0.00053 34.1 0.2 16 267-282 8-23 (211)
298 3cf2_A TER ATPase, transitiona 25.5 29 0.001 40.7 2.5 50 233-282 200-255 (806)
299 2pt5_A Shikimate kinase, SK; a 25.4 20 0.00069 31.9 0.9 16 267-282 2-17 (168)
300 1f2t_A RAD50 ABC-ATPase; DNA d 25.4 18 0.00062 32.8 0.6 15 268-282 26-40 (149)
301 2r2a_A Uncharacterized protein 25.3 15 0.00052 35.3 0.1 18 267-284 7-24 (199)
302 1via_A Shikimate kinase; struc 25.2 19 0.00065 32.6 0.7 16 267-282 6-21 (175)
303 2whx_A Serine protease/ntpase/ 25.1 20 0.0007 40.3 1.1 23 257-281 180-202 (618)
304 3t61_A Gluconokinase; PSI-biol 25.1 19 0.00065 33.4 0.7 17 266-282 19-35 (202)
305 1qf9_A UMP/CMP kinase, protein 24.9 18 0.00063 32.6 0.5 16 267-282 8-23 (194)
306 2c95_A Adenylate kinase 1; tra 24.7 20 0.00069 32.6 0.8 16 267-282 11-26 (196)
307 1moz_A ARL1, ADP-ribosylation 24.6 21 0.00072 31.8 0.9 27 257-283 9-36 (183)
308 1x79_B RAB GTPase binding effe 24.6 3.7E+02 0.013 24.1 8.9 57 123-189 42-98 (112)
309 2v3c_C SRP54, signal recogniti 24.6 40 0.0014 36.4 3.1 16 267-282 101-116 (432)
310 2iut_A DNA translocase FTSK; n 24.6 16 0.00055 41.2 0.1 17 266-282 215-231 (574)
311 4eun_A Thermoresistant glucoki 24.5 18 0.00061 33.8 0.3 16 267-282 31-46 (200)
312 3oja_B Anopheles plasmodium-re 24.4 3.4E+02 0.011 29.4 10.6 13 178-190 572-584 (597)
313 1zd8_A GTP:AMP phosphotransfer 24.4 19 0.00065 34.2 0.5 16 267-282 9-24 (227)
314 3o8b_A HCV NS3 protease/helica 24.3 28 0.00095 39.9 2.0 16 267-282 234-249 (666)
315 1ukz_A Uridylate kinase; trans 24.3 20 0.00068 33.2 0.6 16 267-282 17-32 (203)
316 3crv_A XPD/RAD3 related DNA he 24.2 24 0.00083 38.7 1.4 25 256-282 15-39 (551)
317 3m6a_A ATP-dependent protease 24.2 18 0.00061 40.0 0.3 17 266-282 109-125 (543)
318 1odf_A YGR205W, hypothetical 3 23.9 37 0.0013 34.5 2.6 19 264-282 30-48 (290)
319 3a4m_A L-seryl-tRNA(SEC) kinas 23.8 22 0.00074 35.0 0.9 17 266-282 5-21 (260)
320 4a15_A XPD helicase, ATP-depen 23.6 29 0.001 39.0 2.0 38 240-282 2-39 (620)
321 2qmh_A HPR kinase/phosphorylas 23.5 23 0.00078 35.0 0.9 23 262-284 31-53 (205)
322 3crm_A TRNA delta(2)-isopenten 23.2 26 0.0009 36.5 1.4 17 266-282 6-22 (323)
323 1aky_A Adenylate kinase; ATP:A 23.1 21 0.00073 33.6 0.6 16 267-282 6-21 (220)
324 1pjr_A PCRA; DNA repair, DNA r 23.0 21 0.0007 40.8 0.5 18 265-282 24-41 (724)
325 3fb4_A Adenylate kinase; psych 22.7 22 0.00076 33.2 0.6 15 268-282 3-17 (216)
326 2va8_A SSO2462, SKI2-type heli 22.4 23 0.0008 39.8 0.9 20 261-282 44-63 (715)
327 3tif_A Uncharacterized ABC tra 22.4 20 0.00069 35.1 0.3 16 267-282 33-48 (235)
328 2yvu_A Probable adenylyl-sulfa 22.4 27 0.00092 31.9 1.1 17 266-282 14-30 (186)
329 2ce2_X GTPase HRAS; signaling 22.3 18 0.00063 31.0 -0.0 16 267-282 5-20 (166)
330 1htw_A HI0065; nucleotide-bind 22.3 20 0.0007 33.1 0.3 16 267-282 35-50 (158)
331 2w00_A HSDR, R.ECOR124I; ATP-b 22.2 20 0.0007 43.0 0.3 15 268-282 303-317 (1038)
332 2cdn_A Adenylate kinase; phosp 21.9 25 0.00087 32.5 0.9 19 264-282 19-37 (201)
333 2jaq_A Deoxyguanosine kinase; 21.8 24 0.00082 32.2 0.7 15 268-282 3-17 (205)
334 2ius_A DNA translocase FTSK; n 21.8 20 0.00067 39.9 0.1 17 266-282 168-184 (512)
335 1zu4_A FTSY; GTPase, signal re 21.7 21 0.00072 36.8 0.3 16 267-282 107-122 (320)
336 1ak2_A Adenylate kinase isoenz 21.7 24 0.00081 33.8 0.6 17 266-282 17-33 (233)
337 3a8t_A Adenylate isopentenyltr 21.5 27 0.00093 36.8 1.1 16 267-282 42-57 (339)
338 2pbr_A DTMP kinase, thymidylat 21.5 25 0.00085 31.8 0.7 15 268-282 3-17 (195)
339 2ged_A SR-beta, signal recogni 21.4 20 0.00069 32.3 0.1 20 264-283 47-66 (193)
340 2i1q_A DNA repair and recombin 21.4 39 0.0013 34.0 2.2 29 255-283 85-116 (322)
341 2if2_A Dephospho-COA kinase; a 21.4 24 0.00081 32.7 0.5 16 267-282 3-18 (204)
342 1s96_A Guanylate kinase, GMP k 21.3 22 0.00076 34.5 0.3 16 267-282 18-33 (219)
343 3dl0_A Adenylate kinase; phosp 21.2 25 0.00085 32.9 0.6 15 268-282 3-17 (216)
344 1jjv_A Dephospho-COA kinase; P 21.2 25 0.00085 32.7 0.6 16 267-282 4-19 (206)
345 3foz_A TRNA delta(2)-isopenten 20.8 27 0.00094 36.5 0.9 16 267-282 12-27 (316)
346 3zvr_A Dynamin-1; hydrolase, D 20.8 1.3E+02 0.0046 35.0 6.7 88 267-366 53-163 (772)
347 1c9k_A COBU, adenosylcobinamid 20.6 27 0.00093 33.4 0.8 15 268-282 2-16 (180)
348 2plr_A DTMP kinase, probable t 20.4 26 0.00091 32.1 0.6 16 267-282 6-21 (213)
349 1zuh_A Shikimate kinase; alpha 20.3 27 0.00091 31.3 0.6 16 267-282 9-24 (168)
350 1v5w_A DMC1, meiotic recombina 20.3 47 0.0016 34.2 2.6 29 255-283 109-140 (343)
351 1g41_A Heat shock protein HSLU 20.2 26 0.00089 38.2 0.6 17 266-282 51-67 (444)
352 1cr0_A DNA primase/helicase; R 20.0 28 0.00095 34.5 0.7 26 257-282 25-52 (296)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-80 Score=670.83 Aligned_cols=289 Identities=45% Similarity=0.664 Sum_probs=241.0
Q ss_pred hhhhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCCcc-cCC--ceEEEEc---CCC--eEEEeCCCccccCCCeEEEccee
Q 047843 168 LGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRA-ETK--NVIEFIG---EDG--SLVILDPLKARKEGRKVFQFNHV 239 (648)
Q Consensus 168 ~~~~~~~~err~l~N~l~elkGnIRV~vRVRP~~~~-E~~--~~i~~~~---~d~--~vvi~~p~~~~~~~~k~F~FD~V 239 (648)
..|.++..+||+|||+++|++|||||||||||+... |.. ..+.+.. ..+ .+.+..+.. ....+.|.||+|
T Consensus 38 ~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~F~FD~V 115 (403)
T 4etp_A 38 EILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEFKFDKI 115 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSS--SCEEEEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCC--CcCceEEEcCEE
Confidence 346677789999999999999999999999999866 322 2333321 111 223322211 122578999999
Q ss_pred eCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecc---------------------------------
Q 047843 240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC--------------------------------- 286 (648)
Q Consensus 240 F~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~--------------------------------- 286 (648)
|+++++|++||+.+.|+|+++++|||+||||||||||||||||++..
T Consensus 116 F~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~E 195 (403)
T 4etp_A 116 FDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIE 195 (403)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred ECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999992210
Q ss_pred -------------------------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceE
Q 047843 287 -------------------------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHS 335 (648)
Q Consensus 287 -------------------------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~ 335 (648)
...+|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+
T Consensus 196 IYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 275 (403)
T 4etp_A 196 IYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHS 275 (403)
T ss_dssp EETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEE
T ss_pred EecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCccc
Confidence 0123578999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeC-CCCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCC---CCCcCCCccc
Q 047843 336 VLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNS---HIPYRNSKLT 411 (648)
Q Consensus 336 IftI~V~~~~~-~~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~---hIPYRdSKLT 411 (648)
||+|+|.+.+. .+....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.||+++.. ||||||||||
T Consensus 276 if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT 355 (403)
T 4etp_A 276 IFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLT 355 (403)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHH
T ss_pred EEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHH
Confidence 99999998765 4556789999999999999999999999999999999999999999999987654 9999999999
Q ss_pred cccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCcc
Q 047843 412 LLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAA 458 (648)
Q Consensus 412 rLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~ 458 (648)
+||||||||||+|+||+||||+..+++||++||+||+||+.|++++.
T Consensus 356 ~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 356 YLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999999999999999999999998763
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3.3e-79 Score=661.15 Aligned_cols=290 Identities=44% Similarity=0.666 Sum_probs=233.9
Q ss_pred hhhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCCcccCCc--eEEEEcCCCeEEEeCCCcc--ccCCCeEEEcceeeCCCC
Q 047843 169 GYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKN--VIEFIGEDGSLVILDPLKA--RKEGRKVFQFNHVFGPTA 244 (648)
Q Consensus 169 ~~~~~~~err~l~N~l~elkGnIRV~vRVRP~~~~E~~~--~i~~~~~d~~vvi~~p~~~--~~~~~k~F~FD~VF~~~a 244 (648)
.+..+..+||+|||+++|++|||||||||||+.+.|... +.....++..+.+..+... ...+.+.|.||+||++++
T Consensus 39 ~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~ 118 (412)
T 3u06_A 39 QLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLS 118 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCC
Confidence 355566899999999999999999999999999877532 2222234445555433221 222357899999999999
Q ss_pred ChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeecc--------------------------------------
Q 047843 245 TQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------- 286 (648)
Q Consensus 245 sQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------- 286 (648)
+|++||+.+.|+|+++|+|||+||||||||||||||||.|..
T Consensus 119 ~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYn 198 (412)
T 3u06_A 119 SQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYN 198 (412)
T ss_dssp CHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeC
Confidence 999999988999999999999999999999999999993210
Q ss_pred --------------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC
Q 047843 287 --------------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT 346 (648)
Q Consensus 287 --------------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~ 346 (648)
...+|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.+.
T Consensus 199 E~i~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 278 (412)
T 3u06_A 199 EVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA 278 (412)
T ss_dssp TEEEETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEET
T ss_pred CeeEEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeC
Confidence 123578899999999999999999999999999999999999999999999999998765
Q ss_pred -CCCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCccee
Q 047843 347 -SGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTL 425 (648)
Q Consensus 347 -~~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~ 425 (648)
.+....|+|+|||||||||.. .|.|++|+.+||+||++||+||.||++++.||||||||||+||||||||||+|+
T Consensus 279 ~~~~~~~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~ 354 (412)
T 3u06_A 279 EKQEISVGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTL 354 (412)
T ss_dssp TTTEEEEEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEE
T ss_pred CCCCEEEEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEE
Confidence 345567999999999999974 468999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcCCHHHHHHHHHHHHHhcccccCcccccc
Q 047843 426 MFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNK 462 (648)
Q Consensus 426 mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~~ 462 (648)
||+||||+..+++||++||+||+||+.|++++++.+.
T Consensus 355 mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n~ 391 (412)
T 3u06_A 355 MFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNR 391 (412)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhhcccccccccc
Confidence 9999999999999999999999999999988876654
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=7.1e-77 Score=635.04 Aligned_cols=294 Identities=43% Similarity=0.660 Sum_probs=248.5
Q ss_pred hhcCCCeEEEEEeCCCCcccCC--ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHHHHHc
Q 047843 185 QDLRGNIRVYCRVRPSFRAETK--NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSVMD 262 (648)
Q Consensus 185 ~elkGnIRV~vRVRP~~~~E~~--~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~svLd 262 (648)
+||+|+|||+|||||+...|.. .++.+...+.. .+..+.. ....+.|.||+||+++++|++||+.+.|+|+++++
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~ 77 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEF-TVEHLWK--DDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVD 77 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEEECSSS-EEEEECT--TSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEEcCCcE-EEEecCC--CCCceEEecCEEECCCCCcceehhhhhhhhHhhhc
Confidence 5899999999999999987632 22333323322 2222211 12257999999999999999999999999999999
Q ss_pred CcceEEEeecccCCCCceeeeecc--------------------------------------------------------
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------------- 286 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------------- 286 (648)
|||+||||||||||||||||+|..
T Consensus 78 G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i 157 (369)
T 3cob_A 78 GYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDI 157 (369)
T ss_dssp TCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEE
T ss_pred CCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEE
Confidence 999999999999999999993310
Q ss_pred --cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcCCC
Q 047843 287 --ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLAGS 363 (648)
Q Consensus 287 --~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLAGS 363 (648)
...+|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+.+. .+....|+|+|||||||
T Consensus 158 ~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLAGS 237 (369)
T 3cob_A 158 KKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGS 237 (369)
T ss_dssp EECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECCCS
T ss_pred EECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCCCC
Confidence 013567899999999999999999999999999999999999999999999999998765 45567899999999999
Q ss_pred cccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHH
Q 047843 364 ERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVST 443 (648)
Q Consensus 364 ER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsT 443 (648)
||+.++++.|.+++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+|||||||+..+++||++|
T Consensus 238 Er~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~T 317 (369)
T 3cob_A 238 ERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNS 317 (369)
T ss_dssp SCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHH
T ss_pred CcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCccccccchHHHHHHHHHHHHHHHHHH
Q 047843 444 LKFAQRVSTVELGAARVNKESNEVMQLKEQIESLKKALA 482 (648)
Q Consensus 444 LrFA~Rak~I~~~~~~~~~~~~~i~~Lk~eI~~LK~~L~ 482 (648)
|+||+||+.|++.+..+.. ..++.+|+++++.|++++.
T Consensus 318 LrfA~rak~i~~~~~~n~~-~~ei~~L~~~l~~~~~~~~ 355 (369)
T 3cob_A 318 LTYASRVRSIVNDPSKNVS-SKEVARLKKLVSYWKEQAG 355 (369)
T ss_dssp HHHHHHHHTCBCCCCCCEE-CHHHHHHHHHTTCC-----
T ss_pred HHHHHHHhhcccCCcccCC-HHHHHHHHHHHHHHHHhcC
Confidence 9999999999998875544 4666667766666666543
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.5e-76 Score=632.25 Aligned_cols=276 Identities=45% Similarity=0.676 Sum_probs=203.1
Q ss_pred HHhhhhhhhcCCCeEEEEEeCCCCcccCCc---eEEEE-------cCCCeEEEeCCCcc--------ccCCCeEEEccee
Q 047843 178 RKLYNMVQDLRGNIRVYCRVRPSFRAETKN---VIEFI-------GEDGSLVILDPLKA--------RKEGRKVFQFNHV 239 (648)
Q Consensus 178 r~l~N~l~elkGnIRV~vRVRP~~~~E~~~---~i~~~-------~~d~~vvi~~p~~~--------~~~~~k~F~FD~V 239 (648)
-+|||++++++|||||||||||+++.|... .+.+. .++..+++..|... .....+.|.||+|
T Consensus 11 ~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~V 90 (376)
T 2rep_A 11 SSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRV 90 (376)
T ss_dssp ------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEE
T ss_pred ccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEE
Confidence 479999999999999999999999887542 22222 22334444332110 0122468999999
Q ss_pred eCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeeccc--------------------------------
Q 047843 240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA-------------------------------- 287 (648)
Q Consensus 240 F~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~-------------------------------- 287 (648)
|+++++|++||+.+.|+|+++|+|||+||||||||||||||||+|...
T Consensus 91 f~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v 170 (376)
T 2rep_A 91 FPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSF 170 (376)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEE
T ss_pred cCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999999999999999999999999999999944100
Q ss_pred -----------------------------------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCC
Q 047843 288 -----------------------------------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSR 332 (648)
Q Consensus 288 -----------------------------------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSR 332 (648)
..+|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||
T Consensus 171 ~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSR 250 (376)
T 2rep_A 171 VASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSR 250 (376)
T ss_dssp EEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGG
T ss_pred EEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCC
Confidence 124678899999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEeeC-CCCeeeeeeEEEEcCCCcccCCccchh----hhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCC
Q 047843 333 SHSVLTIHVHGKDT-SGSILRSCLHLVDLAGSERVDKSEVTG----DRLKEAQYINKSLSCLGDVITALAQKNSHIPYRN 407 (648)
Q Consensus 333 SH~IftI~V~~~~~-~~~~~~SkL~LVDLAGSER~~ks~a~G----~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRd 407 (648)
||+||+|+|.+.+. .+....|+|+|||||||||++++++.| +|++|+.+||+||++||+||.||++++.||||||
T Consensus 251 SH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRd 330 (376)
T 2rep_A 251 SHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRN 330 (376)
T ss_dssp SEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGG
T ss_pred ceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcC
Confidence 99999999998765 345667999999999999999999999 9999999999999999999999999999999999
Q ss_pred CccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhccc
Q 047843 408 SKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453 (648)
Q Consensus 408 SKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I 453 (648)
||||+||||+|||||+|+||+||||+..+++||++||+||+||+++
T Consensus 331 SkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 331 SKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp SHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999864
No 5
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=6e-76 Score=623.92 Aligned_cols=270 Identities=47% Similarity=0.747 Sum_probs=213.3
Q ss_pred hcCCCeEEEEEeCCCCcccCCc--eEEEE--c-CCC--eEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHH
Q 047843 186 DLRGNIRVYCRVRPSFRAETKN--VIEFI--G-EDG--SLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIR 258 (648)
Q Consensus 186 elkGnIRV~vRVRP~~~~E~~~--~i~~~--~-~d~--~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~ 258 (648)
+|||||||||||||+...|... .+.+. . .++ .+.+..+.. ....+.|.||+||+++++|++||+++.|+|+
T Consensus 2 ~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~ 79 (349)
T 3t0q_A 2 ALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEG--RILSYNFQFDMIFEPSHTNKEIFEEIRQLVQ 79 (349)
T ss_dssp ---CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC----CEEEEEEESEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCC--cccceeeecCEEECCCccHHHHHHHHHHHHH
Confidence 6899999999999999887532 22221 1 112 333433221 1225789999999999999999999999999
Q ss_pred HHHcCcceEEEeecccCCCCceeeeec------------------------------------------c----------
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTMIRS------------------------------------------C---------- 286 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTMi~~------------------------------------------~---------- 286 (648)
++++|||+||||||||||||||||++. .
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 159 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNI 159 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC--------
T ss_pred HHHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccc
Confidence 999999999999999999999999211 0
Q ss_pred --------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCee
Q 047843 287 --------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSIL 351 (648)
Q Consensus 287 --------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~ 351 (648)
...+|++|.|++++.|.|++|++.+|..|..+|++++|.||.+|||||+||+|+|.+.+. .+...
T Consensus 160 ~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 239 (349)
T 3t0q_A 160 DEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETS 239 (349)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCEE
T ss_pred ccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCee
Confidence 012368899999999999999999999999999999999999999999999999998765 45667
Q ss_pred eeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC---CCCCcCCCccccccccccCCCcceeEEE
Q 047843 352 RSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN---SHIPYRNSKLTLLLQDSLGGRAKTLMFA 428 (648)
Q Consensus 352 ~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~---~hIPYRdSKLTrLLqdSLGGNSkT~mI~ 428 (648)
.|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|+||+
T Consensus 240 ~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~ 319 (349)
T 3t0q_A 240 QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFV 319 (349)
T ss_dssp EEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEE
T ss_pred EEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEE
Confidence 8999999999999999999999999999999999999999999998765 4999999999999999999999999999
Q ss_pred ecCCCcCCHHHHHHHHHHHHHhcccccCc
Q 047843 429 HVSPEVDFFGETVSTLKFAQRVSTVELGA 457 (648)
Q Consensus 429 ~ISPs~~~~eETLsTLrFA~Rak~I~~~~ 457 (648)
||||+..+++||++||+||+||+.|+.++
T Consensus 320 ~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 320 NIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999998764
No 6
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=8.9e-75 Score=610.90 Aligned_cols=266 Identities=49% Similarity=0.737 Sum_probs=225.6
Q ss_pred hcCCCeEEEEEeCCCCcccCC-----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHHHH
Q 047843 186 DLRGNIRVYCRVRPSFRAETK-----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIRSV 260 (648)
Q Consensus 186 elkGnIRV~vRVRP~~~~E~~-----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~sv 260 (648)
+++|||||+|||||+...|.. .++.+..++..++...+ ....+.|.||+||+++++|++||+.+.|+|+++
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~ 76 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH----KGKPVSFELDKVFSPQASQQDVFQEVQALVTSC 76 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE----TTEEEEEECSEEECTTCCHHHHHTTTHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC----CCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHH
Confidence 579999999999999987642 34555544444433321 122578999999999999999999999999999
Q ss_pred HcCcceEEEeecccCCCCceeeeecc------------------------------------------------------
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTMIRSC------------------------------------------------------ 286 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTMi~~~------------------------------------------------------ 286 (648)
++|||+||||||||||||||||+|..
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i 156 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceE
Confidence 99999999999999999999993210
Q ss_pred ----cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcC
Q 047843 287 ----ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLA 361 (648)
Q Consensus 287 ----~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLA 361 (648)
...+|++|+|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|.+.+. .+....|+|+|||||
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 236 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLA 236 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCC
Confidence 113567899999999999999999999999999999999999999999999999998775 345678999999999
Q ss_pred CCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHH
Q 047843 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETV 441 (648)
Q Consensus 362 GSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETL 441 (648)
||||+.++++.|.|++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+..+++||+
T Consensus 237 GSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl 316 (330)
T 2h58_A 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETL 316 (330)
T ss_dssp CCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccc
Q 047843 442 STLKFAQRVSTVEL 455 (648)
Q Consensus 442 sTLrFA~Rak~I~~ 455 (648)
+||+||+||++|++
T Consensus 317 ~TL~fA~rak~i~~ 330 (330)
T 2h58_A 317 YSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHhhCcC
Confidence 99999999999863
No 7
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.8e-75 Score=623.23 Aligned_cols=281 Identities=40% Similarity=0.584 Sum_probs=234.3
Q ss_pred hhhhhcCCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHH
Q 047843 182 NMVQDLRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPL 256 (648)
Q Consensus 182 N~l~elkGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~pl 256 (648)
+..++.+++|||+|||||+...|. ..++.+...++.+.+.+|........+.|.||+||+++++|++||+. ++|+
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~pl 93 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPL 93 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHH
Confidence 457788999999999999998763 34567777777888877755434457899999999999999999998 5999
Q ss_pred HHHHHcCcceEEEeecccCCCCceeeeecc--------------------------------------------------
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------- 286 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------- 286 (648)
|+++|+|||+||||||||||||||||+|..
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 173 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQ 173 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCT
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCC
Confidence 999999999999999999999999994421
Q ss_pred --------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC----CCCeeeee
Q 047843 287 --------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT----SGSILRSC 354 (648)
Q Consensus 287 --------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~----~~~~~~Sk 354 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|++.+. ......|+
T Consensus 174 ~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~sk 253 (372)
T 3b6u_A 174 TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGK 253 (372)
T ss_dssp TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEE
T ss_pred CCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEE
Confidence 013567899999999999999999999999999999999999999999999999987653 23456799
Q ss_pred eEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC-CCCCcCCCccccccccccCCCcceeEEEecCCC
Q 047843 355 LHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN-SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPE 433 (648)
Q Consensus 355 L~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~-~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs 433 (648)
|+|||||||||+.++++.|.|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|+||+||||+
T Consensus 254 L~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~ 333 (372)
T 3b6u_A 254 LNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPA 333 (372)
T ss_dssp EEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCB
T ss_pred EEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCc
Confidence 9999999999999999999999999999999999999999999864 699999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcccccCcccccc
Q 047843 434 VDFFGETVSTLKFAQRVSTVELGAARVNK 462 (648)
Q Consensus 434 ~~~~eETLsTLrFA~Rak~I~~~~~~~~~ 462 (648)
..+++||++||+||+||+.|++.+..+..
T Consensus 334 ~~~~~ETlsTLrfA~rak~I~n~~~~n~~ 362 (372)
T 3b6u_A 334 SYNVEETLTTLRYANRAKNIKNKPRVNED 362 (372)
T ss_dssp GGGHHHHHHHHHHHHHHTTCBCCCCCCC-
T ss_pred ccCHHHHHHHHHHHHHHhhccccceecCC
Confidence 99999999999999999999998875543
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=9.3e-75 Score=615.02 Aligned_cols=274 Identities=41% Similarity=0.604 Sum_probs=215.9
Q ss_pred CCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCcc-----ccCCCeEEEcceeeCCCCChhhHHhc-hHHHH
Q 047843 188 RGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKA-----RKEGRKVFQFNHVFGPTATQDDVFKD-TQPLI 257 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~-----~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV 257 (648)
.++|||+|||||+...|. ..++.+..+++.+++.+|... .....+.|.||+||+++++|++||+. +.|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 589999999999998764 245666666667776655321 12336799999999999999999998 59999
Q ss_pred HHHHcCcceEEEeecccCCCCceeeeecc---------------------------------------------------
Q 047843 258 RSVMDGYNVCIFAYGQTGSGKTHTMIRSC--------------------------------------------------- 286 (648)
Q Consensus 258 ~svLdGyN~~IfAYGQTGSGKTyTMi~~~--------------------------------------------------- 286 (648)
+++++|||+||||||||||||||||+|..
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l~ 162 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLP 162 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEEC
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCce
Confidence 99999999999999999999999994321
Q ss_pred ---cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC---CCeeeeeeEEEEc
Q 047843 287 ---ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS---GSILRSCLHLVDL 360 (648)
Q Consensus 287 ---~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~---~~~~~SkL~LVDL 360 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|++.+.. .....|+|+||||
T Consensus 163 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDL 242 (350)
T 2vvg_A 163 LKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDL 242 (350)
T ss_dssp EEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEEC
T ss_pred eeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeC
Confidence 1245788999999999999999999999999999999999999999999999999886542 2346799999999
Q ss_pred CCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHH
Q 047843 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGET 440 (648)
Q Consensus 361 AGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eET 440 (648)
|||||++++++.|++++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 243 AGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ET 322 (350)
T 2vvg_A 243 AGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDET 322 (350)
T ss_dssp CCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHH
T ss_pred CCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCccccc
Q 047843 441 VSTLKFAQRVSTVELGAARVN 461 (648)
Q Consensus 441 LsTLrFA~Rak~I~~~~~~~~ 461 (648)
++||+||+||+.|++.+..+.
T Consensus 323 l~TL~fA~rak~i~n~~~~n~ 343 (350)
T 2vvg_A 323 MSTLRYADRAKQIKNKPRINE 343 (350)
T ss_dssp HHHHHHHHHHTTCBCCCCCCB
T ss_pred HHHHHHHHHHhhccccceecC
Confidence 999999999999999887553
No 9
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=7e-75 Score=615.36 Aligned_cols=270 Identities=46% Similarity=0.736 Sum_probs=221.4
Q ss_pred cCCCeEEEEEeCCCCc-ccC--CceEEEEc---CCC--eEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhchHHHHH
Q 047843 187 LRGNIRVYCRVRPSFR-AET--KNVIEFIG---EDG--SLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDTQPLIR 258 (648)
Q Consensus 187 lkGnIRV~vRVRP~~~-~E~--~~~i~~~~---~d~--~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v~plV~ 258 (648)
|||||||||||||+.. .|. ..++.+.. .++ .+.+..+.. ....+.|.||+||+++++|++||+.+.|+|+
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~ 78 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN--TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQ 78 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGG--TTCEEEEEESEEECTTCCHHHHHHHHHHHHG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCC--CcCceEEeeCEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999987 342 22333321 112 344443321 1235789999999999999999999999999
Q ss_pred HHHcCcceEEEeecccCCCCceeeeec-----------------------------------------------------
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTMIRS----------------------------------------------------- 285 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTMi~~----------------------------------------------------- 285 (648)
++++|||+||||||||||||||||+|.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 79 SSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred HhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 999999999999999999999999211
Q ss_pred -----------ccCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeee
Q 047843 286 -----------CASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRS 353 (648)
Q Consensus 286 -----------~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~S 353 (648)
....+|++|.|++++.|.+++|++.+|..|..+|++++|.||.+|||||+||+|+|.+.+. .+....|
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~s 238 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEE
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeee
Confidence 0012457789999999999999999999999999999999999999999999999998764 4556789
Q ss_pred eeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC---CCCCcCCCccccccccccCCCcceeEEEec
Q 047843 354 CLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN---SHIPYRNSKLTLLLQDSLGGRAKTLMFAHV 430 (648)
Q Consensus 354 kL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~---~hIPYRdSKLTrLLqdSLGGNSkT~mI~~I 430 (648)
+|+|||||||||++++++.|+|++|+.+||+||++||+||.||++++ .||||||||||+||||+|||||+|+||+||
T Consensus 239 kL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~v 318 (347)
T 1f9v_A 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNI 318 (347)
T ss_dssp EEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEE
T ss_pred EEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEe
Confidence 99999999999999999999999999999999999999999999866 899999999999999999999999999999
Q ss_pred CCCcCCHHHHHHHHHHHHHhcccccCcc
Q 047843 431 SPEVDFFGETVSTLKFAQRVSTVELGAA 458 (648)
Q Consensus 431 SPs~~~~eETLsTLrFA~Rak~I~~~~~ 458 (648)
||+..+++||++||+||+||++|++++.
T Consensus 319 sP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 319 SPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp CCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred CCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999998763
No 10
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4.8e-75 Score=618.29 Aligned_cols=272 Identities=42% Similarity=0.693 Sum_probs=201.7
Q ss_pred hhhhhhhcCCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccc-----------------cCCCeEEEcce
Q 047843 180 LYNMVQDLRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKAR-----------------KEGRKVFQFNH 238 (648)
Q Consensus 180 l~N~l~elkGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~-----------------~~~~k~F~FD~ 238 (648)
+++..+|++|+|||+|||||++..|. ..++.+. ++.+++.+|.... ....+.|.||+
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~ 78 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVV--DKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDA 78 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEEC--SSSEEEEC------------------------CCEEEECSE
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEec--CCceEEecCCCCcceeecccccccccchhccCCCceEEece
Confidence 46788999999999999999998774 2344443 3445566654311 12346899999
Q ss_pred eeCCCCChhhHHhch-HHHHHHHHcCcceEEEeecccCCCCceeeeecc-------------------------------
Q 047843 239 VFGPTATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC------------------------------- 286 (648)
Q Consensus 239 VF~~~asQeeVf~~v-~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~------------------------------- 286 (648)
||+++++|++||+.+ .|+|+++++|||+||||||||||||||||+|..
T Consensus 79 vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS 158 (355)
T 3lre_A 79 VFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVS 158 (355)
T ss_dssp EECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred EECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEE
Confidence 999999999999985 999999999999999999999999999993311
Q ss_pred -----------------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEE
Q 047843 287 -----------------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHG 343 (648)
Q Consensus 287 -----------------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~ 343 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|.+
T Consensus 159 ~~EIYnE~i~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~ 238 (355)
T 3lre_A 159 YLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQ 238 (355)
T ss_dssp EEEEETTEEEESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEE
T ss_pred EEEEECCEEEECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEE
Confidence 124678899999999999999999999999999999999999999999999999998
Q ss_pred eeCC----CCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC---CCCCCcCCCcccccccc
Q 047843 344 KDTS----GSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK---NSHIPYRNSKLTLLLQD 416 (648)
Q Consensus 344 ~~~~----~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~---~~hIPYRdSKLTrLLqd 416 (648)
.+.. .....|+|+|||||||||++++++.|.|++|+.+||+||++||+||.||+++ ..||||||||||+||||
T Consensus 239 ~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~d 318 (355)
T 3lre_A 239 QDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKD 318 (355)
T ss_dssp EETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTT
T ss_pred ecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHH
Confidence 7642 3356799999999999999999999999999999999999999999999874 35999999999999999
Q ss_pred ccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhccc
Q 047843 417 SLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTV 453 (648)
Q Consensus 417 SLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I 453 (648)
+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 319 sLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 319 SLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp TSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred hcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999986
No 11
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.3e-74 Score=616.90 Aligned_cols=284 Identities=41% Similarity=0.572 Sum_probs=223.9
Q ss_pred hhcCCCeEEEEEeCCCCcccCC----ceEEEEcC--CCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHH
Q 047843 185 QDLRGNIRVYCRVRPSFRAETK----NVIEFIGE--DGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLI 257 (648)
Q Consensus 185 ~elkGnIRV~vRVRP~~~~E~~----~~i~~~~~--d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV 257 (648)
...+|+|||+|||||+.+.|.. .++.+.++ +..+.+ +.+.|.||+||+++++|++||+.+ .|+|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~---------~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 77 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI---------AGKVYLFDKVFKPNASQEKVYNEAAKSIV 77 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE---------TTEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE---------CCEEEeCceEecCCCCHHHHHHHhhhhHH
Confidence 3467999999999999987742 23333332 222221 247899999999999999999985 9999
Q ss_pred HHHHcCcceEEEeecccCCCCceeeeecc---------------------------------------------------
Q 047843 258 RSVMDGYNVCIFAYGQTGSGKTHTMIRSC--------------------------------------------------- 286 (648)
Q Consensus 258 ~svLdGyN~~IfAYGQTGSGKTyTMi~~~--------------------------------------------------- 286 (648)
+++++|||+||||||||||||||||.|..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc
Confidence 99999999999999999999999994321
Q ss_pred -------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEE
Q 047843 287 -------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLV 358 (648)
Q Consensus 287 -------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LV 358 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|.+.+. .+....|+|+||
T Consensus 158 ~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lV 237 (365)
T 2y65_A 158 VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLV 237 (365)
T ss_dssp CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEEE
Confidence 013467899999999999999999999999999999999999999999999999998765 345678999999
Q ss_pred EcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC-CCCCCcCCCccccccccccCCCcceeEEEecCCCcCCH
Q 047843 359 DLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK-NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFF 437 (648)
Q Consensus 359 DLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~-~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~ 437 (648)
|||||||++++++.|.+++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+||||+..++
T Consensus 238 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~ 317 (365)
T 2y65_A 238 DLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNE 317 (365)
T ss_dssp ECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGH
T ss_pred ECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCH
Confidence 99999999999999999999999999999999999999986 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCccccccchH--HHHHHHHHHHHH
Q 047843 438 GETVSTLKFAQRVSTVELGAARVNKESN--EVMQLKEQIESL 477 (648)
Q Consensus 438 eETLsTLrFA~Rak~I~~~~~~~~~~~~--~i~~Lk~eI~~L 477 (648)
+||++||+||+||+.|++.+..+..... .++.++++++.+
T Consensus 318 ~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~ 359 (365)
T 2y65_A 318 SETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKN 359 (365)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC--------
T ss_pred HHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998876544332 233344444443
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=9.5e-75 Score=616.82 Aligned_cols=276 Identities=39% Similarity=0.577 Sum_probs=222.7
Q ss_pred hhcCCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHH
Q 047843 185 QDLRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRS 259 (648)
Q Consensus 185 ~elkGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~s 259 (648)
.+.+|||||+|||||+...|. ..++.+......+.+..+........+.|.||+||+++++|++||+.+ .|+|++
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDE 83 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHH
Confidence 356799999999999997763 245666655566655432211222357899999999999999999985 999999
Q ss_pred HHcCcceEEEeecccCCCCceeeeeccc-------------C--------------------------------------
Q 047843 260 VMDGYNVCIFAYGQTGSGKTHTMIRSCA-------------S-------------------------------------- 288 (648)
Q Consensus 260 vLdGyN~~IfAYGQTGSGKTyTMi~~~~-------------~-------------------------------------- 288 (648)
+|+|||+||||||||||||||||+|... +
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETT
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehh
Confidence 9999999999999999999999965310 0
Q ss_pred ------------------CCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC--CC
Q 047843 289 ------------------ENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT--SG 348 (648)
Q Consensus 289 ------------------~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~--~~ 348 (648)
.+|++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|...+. .+
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~ 243 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTS
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCC
Confidence 1356788999999999999999999999999999999999999999999999987543 22
Q ss_pred C--eeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeE
Q 047843 349 S--ILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLM 426 (648)
Q Consensus 349 ~--~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~m 426 (648)
. ...|+|+|||||||||++++++.|.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+|
T Consensus 244 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 323 (359)
T 1x88_A 244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSI 323 (359)
T ss_dssp CEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEE
T ss_pred CceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEEE
Confidence 2 45799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcCCHHHHHHHHHHHHHhcccccCcccc
Q 047843 427 FAHVSPEVDFFGETVSTLKFAQRVSTVELGAARV 460 (648)
Q Consensus 427 I~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~ 460 (648)
|+||||+..+++||++||+||+||+.|++.|..+
T Consensus 324 Ia~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn 357 (359)
T 1x88_A 324 IATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357 (359)
T ss_dssp EEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC--
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhccCcceeC
Confidence 9999999999999999999999999999988644
No 13
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.4e-74 Score=617.45 Aligned_cols=279 Identities=36% Similarity=0.522 Sum_probs=203.9
Q ss_pred hhhhhhcCCCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHH
Q 047843 181 YNMVQDLRGNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQP 255 (648)
Q Consensus 181 ~N~l~elkGnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~p 255 (648)
|-..+..+|+|||+|||||+...|.. .++... ++..+.+.++... ...+.|.||+||+++++|++||+. +.|
T Consensus 13 ~~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~-~~~~~~i~~~~~~--~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 13 NLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGM-DSCSLEIANWRNH--QETLKYQFDAFYGERSTQQDIYAGSVQP 89 (388)
T ss_dssp -CCSSSCCCCCEEEEEECCCC--------------------------------CEEEEECSEEECTTCCHHHHHHHHTGG
T ss_pred cccccCCCCCEEEEEECCCCChhhhccCCCceEEec-CCCeEEEecCCCC--CCeeEEEcceEecCCCCHhHHHHHHHHH
Confidence 33567889999999999999987743 222222 2334444443221 225789999999999999999997 699
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeeeecc-------------------------------------------------
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC------------------------------------------------- 286 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi~~~------------------------------------------------- 286 (648)
+|+++|+|||+||||||||||||||||+|..
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~ 169 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDP 169 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSC
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhcc
Confidence 9999999999999999999999999994310
Q ss_pred ---------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC--CCeeeeee
Q 047843 287 ---------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--GSILRSCL 355 (648)
Q Consensus 287 ---------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--~~~~~SkL 355 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|.+.+.. .....|+|
T Consensus 170 ~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL 249 (388)
T 3bfn_A 170 ASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKL 249 (388)
T ss_dssp SSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEE
T ss_pred CCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEE
Confidence 0135788999999999999999999999999999999999999999999999999987642 34578999
Q ss_pred EEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcC
Q 047843 356 HLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVD 435 (648)
Q Consensus 356 ~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~ 435 (648)
+|||||||||+.++++.|.|++|+.+||+||++||+||.||+++..||||||||||+||||||||||+|+||+||||+..
T Consensus 250 ~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~ 329 (388)
T 3bfn_A 250 YLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERR 329 (388)
T ss_dssp EEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGG
T ss_pred EEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCcccccc
Q 047843 436 FFGETVSTLKFAQRVSTVELGAARVNK 462 (648)
Q Consensus 436 ~~eETLsTLrFA~Rak~I~~~~~~~~~ 462 (648)
+++||++||+||+||+.|++.|..+..
T Consensus 330 ~~~ETlsTLrfA~rak~I~n~p~~n~~ 356 (388)
T 3bfn_A 330 FYLDTVSALNFAARSKEVINRPFTNES 356 (388)
T ss_dssp GHHHHHHHHHHHCSEEEEC--------
T ss_pred cHHHHHHHHHHHHHHhhCcCcCcccCC
Confidence 999999999999999999998875543
No 14
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=7.4e-74 Score=618.41 Aligned_cols=286 Identities=31% Similarity=0.445 Sum_probs=224.7
Q ss_pred HhhhhhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCcccc----CCCeEEEcc
Q 047843 166 AALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARK----EGRKVFQFN 237 (648)
Q Consensus 166 ~~~~~~~~~~err~l~N~l~elkGnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~----~~~k~F~FD 237 (648)
....|++.+..|+..+|...+ .++|||+|||||++..|.. .++.+ .+++.+++.+|..... ...+.|.||
T Consensus 49 ~i~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~-~~~~~v~v~~~~~~~~~~~~~~~~~F~FD 126 (410)
T 1v8k_A 49 MIKEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKVDLTKYLENQAFCFD 126 (410)
T ss_dssp HHHHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEEC-CSSSEEEEEEEEECTTCCEEEEEEEEECS
T ss_pred HHHHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEE-CCCCEEEEecCcccccccccccceEEeee
Confidence 344688888889999998877 8999999999999987642 34444 3345555544422110 124689999
Q ss_pred eeeCCCCChhhHHhc-hHHHHHHHHcCcceEEEeecccCCCCceeeeecc------------------------------
Q 047843 238 HVFGPTATQDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC------------------------------ 286 (648)
Q Consensus 238 ~VF~~~asQeeVf~~-v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~------------------------------ 286 (648)
+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||.|..
T Consensus 127 ~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~ 206 (410)
T 1v8k_A 127 FAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRN 206 (410)
T ss_dssp EEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHT
T ss_pred EEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccC
Confidence 999999999999998 5999999999999999999999999999996521
Q ss_pred -------------------------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceE
Q 047843 287 -------------------------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHS 335 (648)
Q Consensus 287 -------------------------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~ 335 (648)
...+|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+
T Consensus 207 ~~~~V~vS~lEIYnE~i~DLL~~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~ 286 (410)
T 1v8k_A 207 LNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHA 286 (410)
T ss_dssp TCCEEEEEEEEEETTEEEETTTTTEEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEE
T ss_pred ccEEEEEEEEEeeCCEEEECCCCCCCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceE
Confidence 0135778999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeCCCCeeeeeeEEEEcCCCcccCCcc-chhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCcccccc
Q 047843 336 VLTIHVHGKDTSGSILRSCLHLVDLAGSERVDKSE-VTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLL 414 (648)
Q Consensus 336 IftI~V~~~~~~~~~~~SkL~LVDLAGSER~~ks~-a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLL 414 (648)
||+|+|.+.. ...|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+++..||||||||||+||
T Consensus 287 Ifti~v~~~~----~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLL 362 (410)
T 1v8k_A 287 CFQILLRTKG----RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 362 (410)
T ss_dssp EEEEEEESSS----SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHT
T ss_pred EEEEEEEeCC----cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHH
Confidence 9999998652 468999999999999998876 46788899999999999999999999999999999999999999
Q ss_pred ccc-cCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCc
Q 047843 415 QDS-LGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGA 457 (648)
Q Consensus 415 qdS-LGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~ 457 (648)
||| |||||+|+|||||||+..+++||++||+||+||+.|...+
T Consensus 363 qdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 363 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp THHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred hhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 999 6999999999999999999999999999999999997544
No 15
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1e-73 Score=601.65 Aligned_cols=259 Identities=42% Similarity=0.623 Sum_probs=232.9
Q ss_pred hhcCCCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHH
Q 047843 185 QDLRGNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRS 259 (648)
Q Consensus 185 ~elkGnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~s 259 (648)
...+|||||+|||||+.+.|.. .++.+.+ ++.+++ . .+.|.||+||+++++|++||+.+ +|+|++
T Consensus 3 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~~~~~-~--------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~ 72 (325)
T 1bg2_A 3 DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQG-EDTVVI-A--------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKD 72 (325)
T ss_dssp CCSSCEEEEEEEECCCCHHHHHHTCCBCCEEET-TTEEEE-T--------TEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CCCCCCEEEEEEcCCCChhHhccCCeeEEEECC-CCeEEE-C--------CEEEECCeEeCCCCCHHHHHHHHhhhhHHH
Confidence 3458999999999999987742 3344443 334433 1 46899999999999999999985 999999
Q ss_pred HHcCcceEEEeecccCCCCceeeeecc-----------------------------------------------------
Q 047843 260 VMDGYNVCIFAYGQTGSGKTHTMIRSC----------------------------------------------------- 286 (648)
Q Consensus 260 vLdGyN~~IfAYGQTGSGKTyTMi~~~----------------------------------------------------- 286 (648)
+++|||+||||||||||||||||+|..
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~ 152 (325)
T 1bg2_A 73 VLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTN 152 (325)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCS
T ss_pred HhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCC
Confidence 999999999999999999999995421
Q ss_pred -----cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC-CCeeeeeeEEEEc
Q 047843 287 -----ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS-GSILRSCLHLVDL 360 (648)
Q Consensus 287 -----~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~-~~~~~SkL~LVDL 360 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.+|.+|||||+||+|+|.+.+.. +....|+|+||||
T Consensus 153 l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lVDL 232 (325)
T 1bg2_A 153 LSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDL 232 (325)
T ss_dssp BCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEEC
T ss_pred ceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEEEC
Confidence 0134678899999999999999999999999999999999999999999999999987653 4567899999999
Q ss_pred CCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHH
Q 047843 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGET 440 (648)
Q Consensus 361 AGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eET 440 (648)
|||||++++++.|.+++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 233 AGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ET 312 (325)
T 1bg2_A 233 AGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESET 312 (325)
T ss_dssp CCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHH
T ss_pred CCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 047843 441 VSTLKFAQRVSTV 453 (648)
Q Consensus 441 LsTLrFA~Rak~I 453 (648)
++||+||+|||.|
T Consensus 313 l~TL~fa~rak~I 325 (325)
T 1bg2_A 313 KSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHHHhccC
Confidence 9999999999986
No 16
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.5e-73 Score=612.25 Aligned_cols=283 Identities=32% Similarity=0.466 Sum_probs=222.7
Q ss_pred hhhhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccc----cCCCeEEEccee
Q 047843 168 LGYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKAR----KEGRKVFQFNHV 239 (648)
Q Consensus 168 ~~~~~~~~err~l~N~l~elkGnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~----~~~~k~F~FD~V 239 (648)
..|++.++.|+.++|+..+ +++|||+|||||++..|.. .++.+ .+++.+++.+|.... ....+.|.||+|
T Consensus 31 ~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~-~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~V 108 (387)
T 2heh_A 31 KEFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISI-PSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 108 (387)
T ss_dssp HHHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEEC-CBSSEEEEEEEEECTTCCEEEEEEEEECSEE
T ss_pred HHHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEE-CCCCEEEEeCCCccccccccccccEEeeeEE
Confidence 3577778888999998887 9999999999999987642 34444 334455555442211 012468999999
Q ss_pred eCCCCChhhHHhc-hHHHHHHHHcCcceEEEeecccCCCCceeeeecc--------------------------------
Q 047843 240 FGPTATQDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC-------------------------------- 286 (648)
Q Consensus 240 F~~~asQeeVf~~-v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~-------------------------------- 286 (648)
|+++++|++||+. +.|+|+++|+|||+||||||||||||||||.|..
T Consensus 109 F~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~ 188 (387)
T 2heh_A 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLG 188 (387)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTT
T ss_pred EecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCce
Confidence 9999999999998 5999999999999999999999999999996521
Q ss_pred -----------------------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEE
Q 047843 287 -----------------------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVL 337 (648)
Q Consensus 287 -----------------------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~If 337 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||..|||||+||
T Consensus 189 ~~V~vS~~EIYnE~v~DLL~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~If 268 (387)
T 2heh_A 189 LEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACF 268 (387)
T ss_dssp CEEEEEEEEEETTEEEETTTTTEECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEE
T ss_pred EEEEEEEEEecCCeEEECCCCCccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEE
Confidence 013567889999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCCeeeeeeEEEEcCCCcccCCcc-chhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCcccccccc
Q 047843 338 TIHVHGKDTSGSILRSCLHLVDLAGSERVDKSE-VTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQD 416 (648)
Q Consensus 338 tI~V~~~~~~~~~~~SkL~LVDLAGSER~~ks~-a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqd 416 (648)
+|+|.+. ....|+|+|||||||||..+++ +.|.+++|+.+||+||++||+||.||+++..||||||||||+||||
T Consensus 269 ti~v~~~----~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqd 344 (387)
T 2heh_A 269 QIILRAK----GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRD 344 (387)
T ss_dssp EEEEESS----SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGG
T ss_pred EEEEEEC----CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhh
Confidence 9999865 2468999999999999998876 4678889999999999999999999999999999999999999999
Q ss_pred c-cCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccC
Q 047843 417 S-LGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELG 456 (648)
Q Consensus 417 S-LGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~ 456 (648)
| |||||+|+||+||||+..+++||++||+||+|||+|+..
T Consensus 345 sllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 345 SFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp GGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred hccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9 699999999999999999999999999999999999753
No 17
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-73 Score=607.79 Aligned_cols=266 Identities=36% Similarity=0.559 Sum_probs=210.7
Q ss_pred hcCCCeEEEEEeCCCCcccCCceEEEEcCCCeEEEeCCCcc------ccCCCeEEEcceeeCCCCChhhHHhch-HHHHH
Q 047843 186 DLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKA------RKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIR 258 (648)
Q Consensus 186 elkGnIRV~vRVRP~~~~E~~~~i~~~~~d~~vvi~~p~~~------~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~ 258 (648)
+.+|||||||||||+.+.|.. .+.+..+...+.+..+... .....+.|.||+||+ +++|++||+.+ +|+|+
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~ 98 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE-MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVS 98 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT-TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHH
T ss_pred CCCCCEEEEEEcCCCCccccc-ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHH
Confidence 568999999999999876654 3445445556666554321 122357899999997 58999999995 99999
Q ss_pred HHHcCcceEEEeecccCCCCceeeeeccc---------------------------------------------------
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTMIRSCA--------------------------------------------------- 287 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTMi~~~~--------------------------------------------------- 287 (648)
++|+|||+||||||||||||||||+|...
T Consensus 99 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 178 (359)
T 3nwn_A 99 QALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYV 178 (359)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSSTTS
T ss_pred HHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccccc
Confidence 99999999999999999999999944210
Q ss_pred -----------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC---CCCeeee
Q 047843 288 -----------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT---SGSILRS 353 (648)
Q Consensus 288 -----------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~---~~~~~~S 353 (648)
...|++|.+++++.|.+.+|++++|..|..+|++++|.||.+|||||+||+|+|.+... .+....|
T Consensus 179 ~~~~~~~~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~s 258 (359)
T 3nwn_A 179 GPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITS 258 (359)
T ss_dssp CTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEE
T ss_pred ccccccceEEecCCceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCcccccc
Confidence 12467788999999999999999999999999999999999999999999999987543 3445689
Q ss_pred eeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhh-CCCCCCcCCCccccccccccCCCcceeEEEecCC
Q 047843 354 CLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ-KNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSP 432 (648)
Q Consensus 354 kL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~-~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISP 432 (648)
+|+|||||||||++++++.|++++|+.+||+||++||+||.||++ +..||||||||||+||||+|||||+|+|||||||
T Consensus 259 kL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP 338 (359)
T 3nwn_A 259 KINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYG 338 (359)
T ss_dssp EEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECC
T ss_pred cceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCC
Confidence 999999999999999999999999999999999999999999996 4579999999999999999999999999999999
Q ss_pred CcCCHHHHHHHHHHHHHhccc
Q 047843 433 EVDFFGETVSTLKFAQRVSTV 453 (648)
Q Consensus 433 s~~~~eETLsTLrFA~Rak~I 453 (648)
+..+++||++||+||+|||.|
T Consensus 339 ~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 339 EAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp SGGGHHHHHHHHHHHTTGGGC
T ss_pred chhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999986
No 18
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=5.6e-73 Score=601.22 Aligned_cols=267 Identities=37% Similarity=0.564 Sum_probs=227.2
Q ss_pred CCCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhch-HHHHHHHHc
Q 047843 188 RGNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKDT-QPLIRSVMD 262 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~v-~plV~svLd 262 (648)
.|+|||+|||||+...|.. .++.+..++..+... .+.+.|.||+||+++++|++||+.+ .|+|+++++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~-------~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 75 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQV-------DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQ 75 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEET-------TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHT
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEEC-------CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHc
Confidence 6899999999999987752 223333334433322 2357899999999999999999985 999999999
Q ss_pred CcceEEEeecccCCCCceeeeecc--------------------------------------------------------
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------------- 286 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------------- 286 (648)
|||+||||||||||||||||+|..
T Consensus 76 G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e 155 (349)
T 1t5c_A 76 GYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIRE 155 (349)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEE
T ss_pred CCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEE
Confidence 999999999999999999993311
Q ss_pred cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC------CCeeeeeeEEEEc
Q 047843 287 ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS------GSILRSCLHLVDL 360 (648)
Q Consensus 287 ~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~------~~~~~SkL~LVDL 360 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|++.+.. +....|+|+||||
T Consensus 156 d~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDL 235 (349)
T 1t5c_A 156 DVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDL 235 (349)
T ss_dssp TTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEEC
T ss_pred CCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEEC
Confidence 0135678999999999999999999999999999999999999999999999999886542 3457899999999
Q ss_pred CCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC--CCCCcCCCccccccccccCCCcceeEEEecCCCcCCHH
Q 047843 361 AGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN--SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFG 438 (648)
Q Consensus 361 AGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~--~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~e 438 (648)
|||||+.++++.|.|++|+.+||+||++||+||.+|++++ .||||||||||+||||+|||||+|+|||||||+ +++
T Consensus 236 AGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ 313 (349)
T 1t5c_A 236 AGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFD 313 (349)
T ss_dssp CCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSH
T ss_pred CCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHH
Confidence 9999999999999999999999999999999999999865 699999999999999999999999999999997 589
Q ss_pred HHHHHHHHHHHhcccccCccccccc
Q 047843 439 ETVSTLKFAQRVSTVELGAARVNKE 463 (648)
Q Consensus 439 ETLsTLrFA~Rak~I~~~~~~~~~~ 463 (648)
||++||+||+||+.|++.|..+...
T Consensus 314 ETlsTL~fA~rak~I~n~~~vn~~~ 338 (349)
T 1t5c_A 314 ETLTALQFASTAKYMKNTPYVNEVS 338 (349)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred HHHHHHHHHHHHhhcccCceeccCC
Confidence 9999999999999999988765443
No 19
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=7.5e-73 Score=601.44 Aligned_cols=269 Identities=40% Similarity=0.613 Sum_probs=238.4
Q ss_pred cCCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHH
Q 047843 187 LRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVM 261 (648)
Q Consensus 187 lkGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svL 261 (648)
-.|+|||+|||||+...|. ..++.+.+ +..+.+.. ....+.|.||+||+++++|++||+. +.|+|++++
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~-----~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 77 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQG-PDTCTVDS-----KEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECS-TTEEEECS-----TTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHT
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcC-CCeEEEcc-----CCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHh
Confidence 3689999999999997663 23455443 33343322 1236799999999999999999997 699999999
Q ss_pred cCcceEEEeecccCCCCceeeeecc-------------------------------------------------------
Q 047843 262 DGYNVCIFAYGQTGSGKTHTMIRSC------------------------------------------------------- 286 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTMi~~~------------------------------------------------------- 286 (648)
+|||+||||||||||||||||+|..
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l 157 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNL 157 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSC
T ss_pred CCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCc
Confidence 9999999999999999999996521
Q ss_pred ----cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC-CCCeeeeeeEEEEcC
Q 047843 287 ----ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT-SGSILRSCLHLVDLA 361 (648)
Q Consensus 287 ----~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~-~~~~~~SkL~LVDLA 361 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|.+.+. .+....|+|+|||||
T Consensus 158 ~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 237 (355)
T 1goj_A 158 PVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237 (355)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred eeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEECC
Confidence 013467889999999999999999999999999999999999999999999999998765 445678999999999
Q ss_pred CCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC-CCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHH
Q 047843 362 GSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK-NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGET 440 (648)
Q Consensus 362 GSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~-~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eET 440 (648)
||||++++++.|.+++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+||||+..+++||
T Consensus 238 GSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ET 317 (355)
T 1goj_A 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAET 317 (355)
T ss_dssp CCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHH
T ss_pred CCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHH
Confidence 99999999999999999999999999999999999985 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCccccc
Q 047843 441 VSTLKFAQRVSTVELGAARVN 461 (648)
Q Consensus 441 LsTLrFA~Rak~I~~~~~~~~ 461 (648)
++||+||+||+.|++.+..+.
T Consensus 318 l~TL~fA~rak~I~n~~~vn~ 338 (355)
T 1goj_A 318 LSTLRFGMRAKSIKNKAKVNA 338 (355)
T ss_dssp HHHHHHHHHHHTCBCCCCCCS
T ss_pred HHHHHHHHHHhhccCCceeCC
Confidence 999999999999999886554
No 20
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=4.3e-73 Score=618.34 Aligned_cols=276 Identities=39% Similarity=0.593 Sum_probs=221.1
Q ss_pred hhhcCCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccc-----------cCCCeEEEcceeeCC------
Q 047843 184 VQDLRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKAR-----------KEGRKVFQFNHVFGP------ 242 (648)
Q Consensus 184 l~elkGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~-----------~~~~k~F~FD~VF~~------ 242 (648)
..+++|||||+|||||+++.|. ..++.+...+..+++..|.... ....+.|.||+||++
T Consensus 33 ~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~ 112 (443)
T 2owm_A 33 SKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDE 112 (443)
T ss_dssp -CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTST
T ss_pred cCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCc
Confidence 4689999999999999998763 2345555445555565543210 113579999999986
Q ss_pred -CCChhhHHhch-HHHHHHHHcCcceEEEeecccCCCCceeeeecc----------------------------------
Q 047843 243 -TATQDDVFKDT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC---------------------------------- 286 (648)
Q Consensus 243 -~asQeeVf~~v-~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~---------------------------------- 286 (648)
.++|++||+.+ .|+|+++|+|||+||||||||||||||||+|..
T Consensus 113 ~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS 192 (443)
T 2owm_A 113 HYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192 (443)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEE
T ss_pred cCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEE
Confidence 48999999995 899999999999999999999999999993310
Q ss_pred -----------------------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEE
Q 047843 287 -----------------------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVL 337 (648)
Q Consensus 287 -----------------------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~If 337 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||
T Consensus 193 ~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~If 272 (443)
T 2owm_A 193 YFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVF 272 (443)
T ss_dssp EEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEE
T ss_pred EEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEE
Confidence 012467789999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeC-----CCCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCC------------
Q 047843 338 TIHVHGKDT-----SGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKN------------ 400 (648)
Q Consensus 338 tI~V~~~~~-----~~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~------------ 400 (648)
+|+|.+... ......|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||+++.
T Consensus 273 ti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~ 352 (443)
T 2owm_A 273 TIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKS 352 (443)
T ss_dssp EEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC--------------
T ss_pred EEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccccccccc
Confidence 999987532 234567999999999999999999999999999999999999999999998643
Q ss_pred ----------CCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCccccc
Q 047843 401 ----------SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVN 461 (648)
Q Consensus 401 ----------~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~ 461 (648)
.||||||||||+||||+|||||+|+||+||||+ +++||++||+||+||+.|++.+..+.
T Consensus 353 g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 353 GRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp -----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred ccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecc
Confidence 389999999999999999999999999999997 59999999999999999999887655
No 21
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-73 Score=607.26 Aligned_cols=276 Identities=41% Similarity=0.622 Sum_probs=222.9
Q ss_pred hhhcCCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHH
Q 047843 184 VQDLRGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIR 258 (648)
Q Consensus 184 l~elkGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~ 258 (648)
-.+.+++|||||||||+...|. ..++.+.+ +..+++..+.. ....+.|.||+||+++++|++||+. +.|+|+
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~ 94 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVG-PREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIE 94 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEET-TTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccCCCceEEEcC-CCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHH
Confidence 3467899999999999998763 34555543 33444433221 2236799999999999999999998 599999
Q ss_pred HHHcCcceEEEeecccCCCCceeeeeccc---------------------------------------------------
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTMIRSCA--------------------------------------------------- 287 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTMi~~~~--------------------------------------------------- 287 (648)
++|+|||+||||||||||||||||+|...
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DL 174 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDL 174 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEES
T ss_pred HHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEEC
Confidence 99999999999999999999999965210
Q ss_pred ----------------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC--C--
Q 047843 288 ----------------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT--S-- 347 (648)
Q Consensus 288 ----------------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~--~-- 347 (648)
..++++|.|++++.|.|++|++++|..|..+|++++|.||.+|||||+||+|+|...+. .
T Consensus 175 L~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 254 (373)
T 2wbe_C 175 LSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254 (373)
T ss_dssp SCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTC
T ss_pred CCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCC
Confidence 12457889999999999999999999999999999999999999999999999987643 1
Q ss_pred CCeeeeeeEEEEcCCCcccCCccch-hhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeE
Q 047843 348 GSILRSCLHLVDLAGSERVDKSEVT-GDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLM 426 (648)
Q Consensus 348 ~~~~~SkL~LVDLAGSER~~ks~a~-G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~m 426 (648)
.....|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.||+++..||||||||||+||||+|||||+|+|
T Consensus 255 ~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 334 (373)
T 2wbe_C 255 DMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSI 334 (373)
T ss_dssp CEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEE
T ss_pred cceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEE
Confidence 2245799999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcCCHHHHHHHHHHHHHhcccccCcccccc
Q 047843 427 FAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVNK 462 (648)
Q Consensus 427 I~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~~ 462 (648)
|+||||+..+++||++||+||+||+.|++.|..+..
T Consensus 335 Ia~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~ 370 (373)
T 2wbe_C 335 IATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370 (373)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence 999999999999999999999999999998876543
No 22
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=9.3e-73 Score=602.86 Aligned_cols=269 Identities=41% Similarity=0.611 Sum_probs=220.4
Q ss_pred CCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCC--------CChhhHHhch-H
Q 047843 188 RGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPT--------ATQDDVFKDT-Q 254 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~--------asQeeVf~~v-~ 254 (648)
.++|||+|||||+...|. ..++.+. ++.+++.+|... ....+.|.||+||++. ++|++||+.+ .
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~--~~~~~i~~~~~~-~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~ 79 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMS--GSTTTIVNPKQP-KETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGE 79 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEE--TTEEEECCTTCT-TSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEEC--CCcEEEeccCCC-CCCceEEecceEeecCccccccccCcHHHHHHHHHH
Confidence 479999999999998763 2334443 445666665432 2346899999999987 8999999985 8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceeeeeccc-----------------------------------------------
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA----------------------------------------------- 287 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~----------------------------------------------- 287 (648)
|+|+++++|||+||||||||||||||||+|...
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~ 159 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN 159 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccc
Confidence 999999999999999999999999999954210
Q ss_pred ------------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCC-----Ce
Q 047843 288 ------------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSG-----SI 350 (648)
Q Consensus 288 ------------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~-----~~ 350 (648)
...|++|.|++++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|.+..... ..
T Consensus 160 ~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 239 (366)
T 2zfi_A 160 PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239 (366)
T ss_dssp TTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEE
T ss_pred cccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccce
Confidence 1246678999999999999999999999999999999999999999999999998764321 23
Q ss_pred eeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhh------------CCCCCCcCCCcccccccccc
Q 047843 351 LRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ------------KNSHIPYRNSKLTLLLQDSL 418 (648)
Q Consensus 351 ~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~------------~~~hIPYRdSKLTrLLqdSL 418 (648)
..|+|+|||||||||++++++.|.|++|+.+||+||++||+||.||++ +..||||||||||+||||+|
T Consensus 240 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsL 319 (366)
T 2zfi_A 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319 (366)
T ss_dssp EEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGS
T ss_pred eEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHh
Confidence 579999999999999999999999999999999999999999999986 35799999999999999999
Q ss_pred CCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCccc
Q 047843 419 GGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAAR 459 (648)
Q Consensus 419 GGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~ 459 (648)
||||+|+||+||||+..+++||++||+||+||+.|++.+..
T Consensus 320 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~ 360 (366)
T 2zfi_A 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360 (366)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC--------
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCC
Confidence 99999999999999999999999999999999999987753
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=1.3e-72 Score=600.27 Aligned_cols=270 Identities=36% Similarity=0.547 Sum_probs=211.9
Q ss_pred hhhhhcCCCeEEEEEeCCCCcccCCceEEEEcCCCeEEEeCCCccc------cCCCeEEEcceeeCCCCChhhHHhch-H
Q 047843 182 NMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKAR------KEGRKVFQFNHVFGPTATQDDVFKDT-Q 254 (648)
Q Consensus 182 N~l~elkGnIRV~vRVRP~~~~E~~~~i~~~~~d~~vvi~~p~~~~------~~~~k~F~FD~VF~~~asQeeVf~~v-~ 254 (648)
-.-.+++|||||||||||..+.+. .++.+..++..+.+..+.... ....+.|.||+||+ +++|++||+.+ .
T Consensus 16 ~~~~~~~g~IrV~vRvRP~~~~~~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~ 93 (358)
T 2nr8_A 16 PRGSGTRKKVHAFVRVKPTDDFAH-EMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 93 (358)
T ss_dssp -------CCEEEEEEECCCSSCCT-TTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred cCCCCCCCCeEEEEEcCCCCCCcc-ceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHH
Confidence 345689999999999999876543 456666666677666553321 12356899999995 88999999995 9
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceeeeeccc-----------------------------------------------
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA----------------------------------------------- 287 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~----------------------------------------------- 287 (648)
|+|+++++|||+||||||||||||||||+|...
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 173 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLST 173 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCC
Confidence 999999999999999999999999999944210
Q ss_pred ---------------CCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC---CCC
Q 047843 288 ---------------SENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT---SGS 349 (648)
Q Consensus 288 ---------------~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~---~~~ 349 (648)
...|++|.|++++.|.+.+|++++|..|..+|++++|.||..|||||+||+|+|++... .+.
T Consensus 174 ~~~~~~~~~~l~i~e~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 253 (358)
T 2nr8_A 174 LPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEK 253 (358)
T ss_dssp STTSCTTTSCCEEEEETTEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------C
T ss_pred ccccCccCCceEEEECCCceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCCC
Confidence 02456788999999999999999999999999999999999999999999999987543 334
Q ss_pred eeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC-CCCCCcCCCccccccccccCCCcceeEEE
Q 047843 350 ILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK-NSHIPYRNSKLTLLLQDSLGGRAKTLMFA 428 (648)
Q Consensus 350 ~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~-~~hIPYRdSKLTrLLqdSLGGNSkT~mI~ 428 (648)
...|+|+|||||||||++++++.|++++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+
T Consensus 254 ~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa 333 (358)
T 2nr8_A 254 YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVT 333 (358)
T ss_dssp CEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEE
T ss_pred EEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEE
Confidence 56899999999999999999999999999999999999999999999874 56999999999999999999999999999
Q ss_pred ecCCCcCCHHHHHHHHHHHHHhccc
Q 047843 429 HVSPEVDFFGETVSTLKFAQRVSTV 453 (648)
Q Consensus 429 ~ISPs~~~~eETLsTLrFA~Rak~I 453 (648)
||||+..+++||++||+||+|||.|
T Consensus 334 ~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 334 NIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999986
No 24
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=2.8e-72 Score=594.73 Aligned_cols=256 Identities=42% Similarity=0.646 Sum_probs=207.1
Q ss_pred CCCeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHHHc
Q 047843 188 RGNIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSVMD 262 (648)
Q Consensus 188 kGnIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~svLd 262 (648)
.++|||+|||||+.+.|. ..++.+......+.+ ...+.|.||+||+++++|++||+. +.|+|+++|+
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~--------~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~ 81 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL--------GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFE 81 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE--------TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe--------cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHh
Confidence 689999999999998773 345555544444433 125789999999999999999998 5999999999
Q ss_pred CcceEEEeecccCCCCceeeeecc--------------------------------------------------------
Q 047843 263 GYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------------------- 286 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------------------- 286 (648)
|||+||||||||||||||||.|..
T Consensus 82 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 161 (344)
T 4a14_A 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR 161 (344)
T ss_dssp TCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGG
T ss_pred hcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhccccc
Confidence 999999999999999999994421
Q ss_pred ------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC---------CCCee
Q 047843 287 ------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT---------SGSIL 351 (648)
Q Consensus 287 ------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~---------~~~~~ 351 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|.+.+. .+...
T Consensus 162 ~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~ 241 (344)
T 4a14_A 162 DIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLL 241 (344)
T ss_dssp GCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEE
T ss_pred cceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCcccccee
Confidence 013567889999999999999999999999999999999999999999999999987642 23456
Q ss_pred eeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC---CCCCCcCCCccccccccccCCCcceeEEE
Q 047843 352 RSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK---NSHIPYRNSKLTLLLQDSLGGRAKTLMFA 428 (648)
Q Consensus 352 ~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~---~~hIPYRdSKLTrLLqdSLGGNSkT~mI~ 428 (648)
.|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.||+++ ..||||||||||+||||+|||||+|+||+
T Consensus 242 ~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 321 (344)
T 4a14_A 242 VSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIA 321 (344)
T ss_dssp EEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEE
T ss_pred eeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEE
Confidence 799999999999999999999999999999999999999999999863 46999999999999999999999999999
Q ss_pred ecCCCcCCHHHHHHHHHHHHHhc
Q 047843 429 HVSPEVDFFGETVSTLKFAQRVS 451 (648)
Q Consensus 429 ~ISPs~~~~eETLsTLrFA~Rak 451 (648)
||||+..+++||++||+||+|||
T Consensus 322 ~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 322 CVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EECCBGGGHHHHHHHHHHHHHTC
T ss_pred EeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999999999986
No 25
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=3.4e-71 Score=589.66 Aligned_cols=268 Identities=31% Similarity=0.459 Sum_probs=228.1
Q ss_pred CeEEEEEeCCCCcccC----CceEEEEcCCCeEEEeCCCccc----cCCCeEEEcceeeCCCCChhhHHhc-hHHHHHHH
Q 047843 190 NIRVYCRVRPSFRAET----KNVIEFIGEDGSLVILDPLKAR----KEGRKVFQFNHVFGPTATQDDVFKD-TQPLIRSV 260 (648)
Q Consensus 190 nIRV~vRVRP~~~~E~----~~~i~~~~~d~~vvi~~p~~~~----~~~~k~F~FD~VF~~~asQeeVf~~-v~plV~sv 260 (648)
||||+|||||+...|. ..++.+. ++..+++.+|.... ....+.|.||+||+++++|++||+. ++|+|+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~-~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 79 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVK-NNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEE-ETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEEC-CCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhh
Confidence 6999999999998773 2345554 34556555443211 1124689999999999999999998 59999999
Q ss_pred Hc-CcceEEEeecccCCCCceeeeecc-----------------------------------------------------
Q 047843 261 MD-GYNVCIFAYGQTGSGKTHTMIRSC----------------------------------------------------- 286 (648)
Q Consensus 261 Ld-GyN~~IfAYGQTGSGKTyTMi~~~----------------------------------------------------- 286 (648)
++ |||+||||||||||||||||+|..
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~ 159 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK 159 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC--
T ss_pred ccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCc
Confidence 96 999999999999999999996531
Q ss_pred ------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEc
Q 047843 287 ------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDL 360 (648)
Q Consensus 287 ------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDL 360 (648)
...+|++|.|++++.|.|++|++++|..|..+|++++|.||..|||||+||+|+|.+.+ .....|+|+||||
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~--~~~~~skL~lVDL 237 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN--KNTSLGKIAFIDL 237 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT--TTEEEEEEEEEEC
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc--CCcceeEEEEEEC
Confidence 01346788999999999999999999999999999999999999999999999998643 4466899999999
Q ss_pred CCCcccCCccchh-hhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHH
Q 047843 361 AGSERVDKSEVTG-DRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGE 439 (648)
Q Consensus 361 AGSER~~ks~a~G-~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eE 439 (648)
|||||+.++++.| .+++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||+||||+..+++|
T Consensus 238 AGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 317 (360)
T 1ry6_A 238 AGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQ 317 (360)
T ss_dssp CCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHH
T ss_pred CCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHH
Confidence 9999999998876 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCcccc
Q 047843 440 TVSTLKFAQRVSTVELGAARV 460 (648)
Q Consensus 440 TLsTLrFA~Rak~I~~~~~~~ 460 (648)
|++||+||+||+.|++.+..+
T Consensus 318 TlsTLrfA~rak~i~n~~~~~ 338 (360)
T 1ry6_A 318 TLNTLRYSSRVKNKGNSKLEG 338 (360)
T ss_dssp HHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhhcccCcccC
Confidence 999999999999999876543
No 26
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=4.9e-71 Score=587.32 Aligned_cols=262 Identities=44% Similarity=0.629 Sum_probs=205.0
Q ss_pred CCeEEEEEeCCCCcccCC----ceEEEEcCCCeEEEeCCCc-----cccCCCeEEEcceee--------CCCCChhhHHh
Q 047843 189 GNIRVYCRVRPSFRAETK----NVIEFIGEDGSLVILDPLK-----ARKEGRKVFQFNHVF--------GPTATQDDVFK 251 (648)
Q Consensus 189 GnIRV~vRVRP~~~~E~~----~~i~~~~~d~~vvi~~p~~-----~~~~~~k~F~FD~VF--------~~~asQeeVf~ 251 (648)
.+|||+|||||++..|.. .++.+. ++.+++..+.. ......+.|.||+|| ++.++|++||+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~--~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~ 78 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVD--ANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFK 78 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEE--TTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeC--CCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHH
Confidence 489999999999987742 233332 34444433221 112336799999999 45689999999
Q ss_pred ch-HHHHHHHHcCcceEEEeecccCCCCceeeeecc--------------------------------------------
Q 047843 252 DT-QPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSC-------------------------------------------- 286 (648)
Q Consensus 252 ~v-~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~-------------------------------------------- 286 (648)
.+ .|+|+++|+|||+||||||||||||||||+|..
T Consensus 79 ~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DL 158 (354)
T 3gbj_A 79 CLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDL 158 (354)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEET
T ss_pred HhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEc
Confidence 95 899999999999999999999999999993211
Q ss_pred --------------cCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeC---C--
Q 047843 287 --------------ASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDT---S-- 347 (648)
Q Consensus 287 --------------~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~---~-- 347 (648)
....|++|.|++++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.+... .
T Consensus 159 L~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~ 238 (354)
T 3gbj_A 159 LDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGT 238 (354)
T ss_dssp TC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCE
T ss_pred cCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCC
Confidence 013477899999999999999999999999999999999999999999999999987532 1
Q ss_pred CCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhh------CCCCCCcCCCccccccccccCCC
Q 047843 348 GSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQ------KNSHIPYRNSKLTLLLQDSLGGR 421 (648)
Q Consensus 348 ~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~------~~~hIPYRdSKLTrLLqdSLGGN 421 (648)
.....|+|+|||||||||+.++++.|+|++|+.+||+||++||+||.||++ +..||||||||||+||||+||||
T Consensus 239 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGn 318 (354)
T 3gbj_A 239 SGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGN 318 (354)
T ss_dssp EEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTT
T ss_pred CCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCC
Confidence 124579999999999999999999999999999999999999999999986 45799999999999999999999
Q ss_pred cceeEEEecCCCcCCHHHHHHHHHHHHHhcc
Q 047843 422 AKTLMFAHVSPEVDFFGETVSTLKFAQRVST 452 (648)
Q Consensus 422 SkT~mI~~ISPs~~~~eETLsTLrFA~Rak~ 452 (648)
|+|+||+||||+..+++||++||+||.||+.
T Consensus 319 skt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 319 SKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp CEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999985
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=5.8e-71 Score=584.77 Aligned_cols=274 Identities=32% Similarity=0.491 Sum_probs=201.1
Q ss_pred hhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCCcccCC---ceEEEEc-CCCeEEEeCCCccccCCCeEEEcceeeCCCCC
Q 047843 170 YHRVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETK---NVIEFIG-EDGSLVILDPLKARKEGRKVFQFNHVFGPTAT 245 (648)
Q Consensus 170 ~~~~~~err~l~N~l~elkGnIRV~vRVRP~~~~E~~---~~i~~~~-~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~as 245 (648)
|+.....+|+=. -.+-.++|||+|||||+...+.. .++.+.. .++..++.+ .+.|.||+||+++++
T Consensus 5 ~~~~~~~~~r~m--~~~~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~--------~~~F~FD~Vf~~~~s 74 (344)
T 3dc4_A 5 YKDDDDKRRRGM--EGAKLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVD--------QNEFHFDHAFPATIS 74 (344)
T ss_dssp ----------------CCCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEET--------TEEEECSEEECTTCC
T ss_pred cccccCcccCCC--CCCCCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEec--------CcEEEcceEECCCCC
Confidence 444444444332 23557899999999999865532 2333332 122233322 578999999999999
Q ss_pred hhhHHhc-hHHHHHHHHcCcceEEEeecccCCCCceeeeeccc--------------------------CC---------
Q 047843 246 QDDVFKD-TQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRSCA--------------------------SE--------- 289 (648)
Q Consensus 246 QeeVf~~-v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~~~--------------------------~~--------- 289 (648)
|++||+. +.|+|+++++|||+||||||||||||||||.+... ..
T Consensus 75 Q~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~v 154 (344)
T 3dc4_A 75 QDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYA 154 (344)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEE
T ss_pred HHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEE
Confidence 9999998 59999999999999999999999999999953210 00
Q ss_pred ----------------------CCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC
Q 047843 290 ----------------------NGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS 347 (648)
Q Consensus 290 ----------------------~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~ 347 (648)
.+..+.+++++.|.|.+|++++|..|..+|++++|.||..|||||+||+|+|.+.
T Consensus 155 S~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~--- 231 (344)
T 3dc4_A 155 SFIEIYNEKPFDLLGSTPHMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK--- 231 (344)
T ss_dssp EEEEEESSCEEETTSSCTTSBCCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS---
T ss_pred EEEEEeCCeeEEccCCCCCCccccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec---
Confidence 0123457889999999999999999999999999999999999999999999753
Q ss_pred CCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEE
Q 047843 348 GSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMF 427 (648)
Q Consensus 348 ~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI 427 (648)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.||++++.||||||||||+||||+|||||+|+||
T Consensus 232 --~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI 309 (344)
T 3dc4_A 232 --THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFL 309 (344)
T ss_dssp --SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEE
T ss_pred --CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEE
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcCCHHHHHHHHHHHHHhcccccCcc
Q 047843 428 AHVSPEVDFFGETVSTLKFAQRVSTVELGAA 458 (648)
Q Consensus 428 ~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~ 458 (648)
+||||+..+++||++||+||+||+.....++
T Consensus 310 a~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 310 ACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999998875543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=8.8e-69 Score=613.16 Aligned_cols=277 Identities=41% Similarity=0.670 Sum_probs=213.8
Q ss_pred HHhhhhhhhcCCCeEEEEEeC----CCCcccCC---ceEEEE-------cCCCeEEEeCCCccccCCCeEEEcceeeCCC
Q 047843 178 RKLYNMVQDLRGNIRVYCRVR----PSFRAETK---NVIEFI-------GEDGSLVILDPLKARKEGRKVFQFNHVFGPT 243 (648)
Q Consensus 178 r~l~N~l~elkGnIRV~vRVR----P~~~~E~~---~~i~~~-------~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~ 243 (648)
++.-.++..+.+++||||||| |.+..|.. ..+.+. ...+.+++..+... ....+.|.||+||+++
T Consensus 363 ~~Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~fd~vf~~~ 441 (715)
T 4h1g_A 363 AAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINN-NFSNLRFLFDKIFERE 441 (715)
T ss_dssp HHHHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETT-EEEEEEEECSEEECSS
T ss_pred HHHHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCC-CCCCeEEEeceEeCCC
Confidence 445667889999999999999 54433321 111111 12344555544332 2347899999999999
Q ss_pred CChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceeeeec--------------------------------------
Q 047843 244 ATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMIRS-------------------------------------- 285 (648)
Q Consensus 244 asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTMi~~-------------------------------------- 285 (648)
++|++||+.+.|+|+++++|||+||||||||||||||||.+.
T Consensus 442 ~~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne 521 (715)
T 4h1g_A 442 QSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNE 521 (715)
T ss_dssp CCHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999210
Q ss_pred --------------------ccCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEee
Q 047843 286 --------------------CASENGLNLPDATMHSVKSTADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKD 345 (648)
Q Consensus 286 --------------------~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~ 345 (648)
....++++|.|++++.|.|.+|++++|..|..+|++++|.+|.+|||||+||+|+|.+.+
T Consensus 522 ~i~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~ 601 (715)
T 4h1g_A 522 AIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYN 601 (715)
T ss_dssp EEEESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEE
T ss_pred EEEECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEe
Confidence 011234789999999999999999999999999999999999999999999999999876
Q ss_pred C-CCCeeeeeeEEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhC-CCCCCcCCCccccccccccCCCcc
Q 047843 346 T-SGSILRSCLHLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQK-NSHIPYRNSKLTLLLQDSLGGRAK 423 (648)
Q Consensus 346 ~-~~~~~~SkL~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~-~~hIPYRdSKLTrLLqdSLGGNSk 423 (648)
. .+....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+ +.|||||||||||||||||||||+
T Consensus 602 ~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~ 681 (715)
T 4h1g_A 602 SLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSK 681 (715)
T ss_dssp TTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCE
T ss_pred cCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCce
Confidence 5 45567899999999999999999999999999999999999999999999854 589999999999999999999999
Q ss_pred eeEEEecCCCcCCHHHHHHHHHHHHHhccccc
Q 047843 424 TLMFAHVSPEVDFFGETVSTLKFAQRVSTVEL 455 (648)
Q Consensus 424 T~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~ 455 (648)
|+|||||||+..+++||++||+||+|||+|+.
T Consensus 682 t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 682 TLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 99999999999999999999999999999974
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=3.7e-29 Score=222.42 Aligned_cols=85 Identities=47% Similarity=0.598 Sum_probs=79.0
Q ss_pred HHHhhhhHHHHHHHHHHHhhC-CCCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCc
Q 047843 379 AQYINKSLSCLGDVITALAQK-NSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGA 457 (648)
Q Consensus 379 a~~INkSLsaLg~VI~ALs~~-~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~ 457 (648)
|.+||+||++||+||.+|+++ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|++.|++.+
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 357999999999999999987 6899999999999999999999999999999999999999999999999999999887
Q ss_pred cccccc
Q 047843 458 ARVNKE 463 (648)
Q Consensus 458 ~~~~~~ 463 (648)
..+...
T Consensus 81 ~~n~~~ 86 (100)
T 2kin_B 81 SVNLEL 86 (100)
T ss_dssp CCEEEC
T ss_pred eeccCC
Confidence 755443
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.94 E-value=2.3e-27 Score=216.41 Aligned_cols=105 Identities=42% Similarity=0.548 Sum_probs=87.0
Q ss_pred hhhHHHHHHHHHHHhhCC-CCCCcCCCccccccccccCCCcceeEEEecCCCcCCHHHHHHHHHHHHHhcccccCccccc
Q 047843 383 NKSLSCLGDVITALAQKN-SHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVDFFGETVSTLKFAQRVSTVELGAARVN 461 (648)
Q Consensus 383 NkSLsaLg~VI~ALs~~~-~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~~~eETLsTLrFA~Rak~I~~~~~~~~ 461 (648)
|+||++||+||.+|+++. .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|++.+..+.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999874 6999999999999999999999999999999999999999999999999999998876554
Q ss_pred cchH-----HHHHHHHHHHHHHHHHHHHHHh
Q 047843 462 KESN-----EVMQLKEQIESLKKALANKEAQ 487 (648)
Q Consensus 462 ~~~~-----~i~~Lk~eI~~LK~~L~~~e~~ 487 (648)
.... ...+..++++.|+..++.++.+
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~e 111 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVE 111 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4322 2233444555555555555543
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.4e-24 Score=219.46 Aligned_cols=236 Identities=13% Similarity=0.217 Sum_probs=155.1
Q ss_pred hhhHHHHHhHHhhhhhhhcCCCeEEEEEeCCCC-cccCCceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCCChh
Q 047843 169 GYHRVVNENRKLYNMVQDLRGNIRVYCRVRPSF-RAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTATQD 247 (648)
Q Consensus 169 ~~~~~~~err~l~N~l~elkGnIRV~vRVRP~~-~~E~~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~asQe 247 (648)
.|+.+...||+|||.|+||||||||||||||.. +. ...+.+. +..+.+ +. ..+.|.||+||++.++|+
T Consensus 4 K~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p~--~~~v~y~--~~~I~v-~~------~~k~f~FDRVf~p~s~Qe 72 (298)
T 2o0a_A 4 TVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLPE--NLLFDYE--NGVITQ-GL------SEHVYKFNRVIPHLKVSE 72 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSCT--TEEEETT--TTEEEE-TT------TCCEEECSEEEETTTSCH
T ss_pred HHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCCc--cceeecC--ccceee-cC------CCceEEeeeEECcccccc
Confidence 466677789999999999999999999999965 31 1223333 333443 32 137999999999999999
Q ss_pred --hHHhchHHHHHHHHc-CcceEEEeecccCCCCc------------------eee------ee------c-----cc--
Q 047843 248 --DVFKDTQPLIRSVMD-GYNVCIFAYGQTGSGKT------------------HTM------IR------S-----CA-- 287 (648)
Q Consensus 248 --eVf~~v~plV~svLd-GyN~~IfAYGQTGSGKT------------------yTM------i~------~-----~~-- 287 (648)
+||+++.++|+++|+ |||+||||||||||||| |+| +- . ..
T Consensus 73 ~~~vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~ 152 (298)
T 2o0a_A 73 DKFFTQEYSVYHDMCLNQKKNFNLISLSTTPHGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHND 152 (298)
T ss_dssp HHHHHHTTHHHHHHHHHTTCCEEEEEECSSCCHHHHHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETTSCCC---
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhcCCCCCCC
Confidence 999999999999999 99999999999999998 334 11 0 00
Q ss_pred -------CCCCcccCCCcEEEecC-HHHHHHHHHhhhhhhcccccccccCCCCceEEEEEEEEEeeCC--C--Ceeeeee
Q 047843 288 -------SENGLNLPDATMHSVKS-TADVLQLMKLGELNRAVSSTAINNRSSRSHSVLTIHVHGKDTS--G--SILRSCL 355 (648)
Q Consensus 288 -------~~~g~~V~~lt~~~V~S-~eevl~lL~~G~~nR~~~sT~~N~~SSRSH~IftI~V~~~~~~--~--~~~~SkL 355 (648)
.+++..+.|++.+.|.+ ++|+..++..+... ..|. +.-.|+.+.+...+.. + ...---+
T Consensus 153 k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~ 223 (298)
T 2o0a_A 153 KDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDF 223 (298)
T ss_dssp ---CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEE
T ss_pred cceEEecCCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccccccCCCCceEE
Confidence 13445678889999999 88888877433321 1221 2355666766654331 1 1123346
Q ss_pred EEEEcCCCcccCCccchhhhhHHHHHhhhhHHHHHHHHHHHhhCCCCCCcCCCccccccccccCCCcceeEEEecCCCcC
Q 047843 356 HLVDLAGSERVDKSEVTGDRLKEAQYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGRAKTLMFAHVSPEVD 435 (648)
Q Consensus 356 ~LVDLAGSER~~ks~a~G~rlkEa~~INkSLsaLg~VI~ALs~~~~hIPYRdSKLTrLLqdSLGGNSkT~mI~~ISPs~~ 435 (648)
+|+.+.-.. +...|.+. +..+ -+-.|+++-+|+--|. ..|.++++++.-...
T Consensus 224 yf~e~~~~~--------------------~~~~l~~~---~~~~----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~ 275 (298)
T 2o0a_A 224 YFIELNNLK--------------------SIEQFDKS---IFKK----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKN 275 (298)
T ss_dssp EEEEECSHH--------------------HHHHHHHH---HHTC-----CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG
T ss_pred EEEEeCCHH--------------------HHHHHHhh---cccc----cccCCcHHHHHHHHHh-cCcceEEEEecCCCc
Confidence 777764321 12223232 2222 3446777777776664 367889999987543
Q ss_pred CHHHHHHHHHHHHHhcccccC
Q 047843 436 FFGETVSTLKFAQRVSTVELG 456 (648)
Q Consensus 436 ~~eETLsTLrFA~Rak~I~~~ 456 (648)
. -.-|..++++..+.+.
T Consensus 276 ~----~~lL~~s~~i~~~~~~ 292 (298)
T 2o0a_A 276 V----NKLLTISEEVQTQLCK 292 (298)
T ss_dssp H----HHHHHHHHHHHHHTC-
T ss_pred h----hHHHHHHHHhhcccCc
Confidence 2 2367788888777653
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.06 E-value=5.9e-05 Score=78.88 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=71.9
Q ss_pred HHHHHhHHhhhhhhhcCCCeEEEEEeCCCCcccCCceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCCC--ChhhH
Q 047843 172 RVVNENRKLYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPTA--TQDDV 249 (648)
Q Consensus 172 ~~~~err~l~N~l~elkGnIRV~vRVRP~~~~E~~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~a--sQeeV 249 (648)
.+...||+|-|.|.|+||.||+|+=+-+-.-+ ..+.+.-.+..+. +- ...+.|.|++|++... .+.-+
T Consensus 42 qE~lrRRkLENSIdElKG~IRcFAYi~~~~~p---~~~~idY~~~~It--~~-----~~~~~y~FnRiIp~~~~~e~~~l 111 (333)
T 4etp_B 42 KELLRSRRLENSIIEQKGTMRVYAYVMEQNLP---ENLLFDYENGVIT--QG-----LSEHVYKFNRVIPHLKVSEDCFF 111 (333)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECCSSCC---SSCEEETTTTEEE--C-------CCCEEECSEEEETTTCCHHHHH
T ss_pred HHHHHHHHHhhhHHHhcCcEEEEEEECcccCC---ccEEEecccceEe--ec-----CCcceEEEeeeechhhcchHHHH
Confidence 34556899999999999999999998774322 2344555565554 11 2367999999998766 56667
Q ss_pred HhchHHHHHHHH-cCcceEEEeecccC
Q 047843 250 FKDTQPLIRSVM-DGYNVCIFAYGQTG 275 (648)
Q Consensus 250 f~~v~plV~svL-dGyN~~IfAYGQTG 275 (648)
|++.+..++-++ .+.|+.||..|+.-
T Consensus 112 ~qE~q~y~DmcL~~~~NfslIsis~~~ 138 (333)
T 4etp_B 112 TQEYSVYHDMALNQKKNFNLISLSTTP 138 (333)
T ss_dssp HHTTHHHHHHHHHTTCCEEEEEEESSC
T ss_pred HHHHHHHHHHHHccCCCeeEEEecCCC
Confidence 788999999999 99999999999763
No 33
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.02 E-value=0.0037 Score=58.16 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=38.5
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++||........|.++++.+..++.++-..-...++-||++|+|||+.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 35788876666678888888887777765333456778999999999997
No 34
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.30 E-value=0.0095 Score=56.20 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=36.4
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcc-eEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYN-VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN-~~IfAYGQTGSGKTyTM 282 (648)
.++||.+......+.++++.+..++...-.++. ..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 457888666555677787776666665544432 67889999999999987
No 35
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.65 E-value=0.027 Score=58.03 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=34.4
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++||.+......+..++..+..++...-.+....|+-||++|+||||.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 5787755444356667765566666554444567888999999999997
No 36
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.61 E-value=1 Score=48.99 Aligned_cols=50 Identities=22% Similarity=0.455 Sum_probs=29.4
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHHH-HHHc--Cc--ceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLIR-SVMD--GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV~-svLd--Gy--N~~IfAYGQTGSGKTyTM 282 (648)
.-+||.|-|-+.--+++.+.+ .|+.. ..+. |. .-.|+-||+.|+|||+..
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 356777777544333444433 23321 2232 32 345899999999999885
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.41 E-value=0.24 Score=50.76 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=34.4
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcce--EEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNV--CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~--~IfAYGQTGSGKTyTM 282 (648)
.+.||.+.+ |+.+...+..++..+-.|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 456777776 556655556666667777664 8899999999999986
No 38
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=87.16 E-value=1.1 Score=46.10 Aligned_cols=89 Identities=18% Similarity=0.256 Sum_probs=52.0
Q ss_pred hhhhhhhcCCCeEEEEEeCCCCcccCCceEEEEcCCCeEEEeCCCccccCCCeEEEcceeeCCC--CChhhHHhchHHHH
Q 047843 180 LYNMVQDLRGNIRVYCRVRPSFRAETKNVIEFIGEDGSLVILDPLKARKEGRKVFQFNHVFGPT--ATQDDVFKDTQPLI 257 (648)
Q Consensus 180 l~N~l~elkGnIRV~vRVRP~~~~E~~~~i~~~~~d~~vvi~~p~~~~~~~~k~F~FD~VF~~~--asQeeVf~~v~plV 257 (648)
|.|.|.|+||.||.|.=+-.-.-++ ...+.-.++++.- ....+.|.|++|.+.. ..++-+|++.+...
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~~---~~~IdY~~~tI~~-------~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~Y~ 73 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEISE---KLIVNYSDESIED-------MKNHKTYKFTKLIQNFSHQNKDLFKEDLHVYI 73 (275)
T ss_dssp ------------CEEEEEETTTSCT---TEEEETTTTEEEE-------TTTTEEEECSEEEEECSSSCCCGGGTHHHHHH
T ss_pred ccccHHHhcCcEEEEEEEccccCCc---cEEEecccceecc-------CCCccEEEEEeeeccccCCHHHHHHHHHHHHH
Confidence 6799999999999998885533222 2444445555531 1236789999999643 23444556788999
Q ss_pred HHHH-cCcceEEEeecccCCCC
Q 047843 258 RSVM-DGYNVCIFAYGQTGSGK 278 (648)
Q Consensus 258 ~svL-dGyN~~IfAYGQTGSGK 278 (648)
+.++ .+.|+.||+.++.--+.
T Consensus 74 DmCL~k~~NfnlISiS~~~~~~ 95 (275)
T 4gkp_A 74 DFCLKRRENFNLFSVGSSNIPN 95 (275)
T ss_dssp HHHHHTTCCEEEEEECCSSCCS
T ss_pred HHHhccCCCceEEEecCCCcHH
Confidence 9998 79999999999866553
No 39
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.15 E-value=0.17 Score=47.76 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=28.3
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++||.+++. ..+++++..+..++. .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGALKSAAS---GDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHHHHHHH---TCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 567766552 234455554433332 235567889999999999986
No 40
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.66 E-value=0.15 Score=50.08 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=23.2
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+||.+.+. ......+...+..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~----~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGE----ANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CC----CHHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeC----CHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 3788888764 3344443333444333 3467788999999999886
No 41
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.62 E-value=1.2 Score=48.59 Aligned_cols=50 Identities=22% Similarity=0.359 Sum_probs=32.0
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHHH-HHHc--C--cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLIR-SVMD--G--YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV~-svLd--G--yN~~IfAYGQTGSGKTyTM 282 (648)
.-+||.|-|-+..-+++.+.+ .|+.. ..+. | +--.|+-||+.|+|||++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 457888877655555555543 44431 2333 2 2356888999999999875
No 42
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.26 E-value=0.32 Score=43.65 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34445555566677899999999999986
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.07 E-value=0.27 Score=49.83 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=29.7
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+||.+.. ...+...+..+..++..-- +....++-||++|+|||+.+
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 478988653 2334445544444433311 12346788999999999997
No 44
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.19 E-value=0.33 Score=47.97 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=29.6
Q ss_pred eEEEcceeeCCCCChhhHHhch-HHH-----HHHHHcCcceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDT-QPL-----IRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v-~pl-----V~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+.||.+.+.+..-+.+.+.+ .++ ....--.....|+-||++|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3578888887543333333322 111 11110123456889999999999886
No 45
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.76 E-value=0.29 Score=49.50 Aligned_cols=45 Identities=27% Similarity=0.534 Sum_probs=30.2
Q ss_pred CeEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 231 RKVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 231 ~k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
...|.||.+++. +.+... +...++.+....|+-||++|+|||+..
T Consensus 18 ~~~~~f~~i~G~----~~~~~~---l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 18 RPVFPFSAIVGQ----EDMKLA---LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCCGGGSCSC----HHHHHH---HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCCchhccCh----HHHHHH---HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 346889998774 333322 333344444556999999999999986
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=83.53 E-value=0.38 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=18.5
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566788999999999999986
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.51 E-value=0.36 Score=43.46 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=22.1
Q ss_pred HHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..++..+..+....|+-||++|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 34445555566778899999999999986
No 48
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=82.34 E-value=0.5 Score=44.76 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=20.8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGTF 68 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 45677788877 577899999999883
No 49
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.33 E-value=0.34 Score=47.45 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=31.9
Q ss_pred EEEcceeeCCCCChhhHHhchHHH-----HHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPL-----IRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~pl-----V~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+.||.+.+.+...+.+.+.+..+ ...+-......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 467899888776666655433221 11111122445889999999999987
No 50
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=81.50 E-value=0.29 Score=49.70 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=27.0
Q ss_pred CChhhHHhchHHHHHHHHc-CcceEEEeecccCCCCceee
Q 047843 244 ATQDDVFKDTQPLIRSVMD-GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 244 asQeeVf~~v~plV~svLd-GyN~~IfAYGQTGSGKTyTM 282 (648)
..+++..+.+...+..++. +...+++-||++|+|||+++
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3455666655555555543 44567899999999999987
No 51
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=81.47 E-value=0.68 Score=43.15 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=19.9
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.| ++..++||||||.+.
T Consensus 32 ~~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 32 ESIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHHccCCC--EEEECCCCCchHHHH
Confidence 35666778876 467789999999765
No 52
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=81.28 E-value=0.6 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=19.5
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..+++|.| ++..++||||||.+.
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHHH
Confidence 4566778877 566789999999874
No 53
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=80.83 E-value=0.33 Score=44.55 Aligned_cols=41 Identities=24% Similarity=0.534 Sum_probs=24.5
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+.||.-+. ..+ .+.+..+..+ .|- .++-||++|+|||+.+
T Consensus 13 ~~~~~~f~~-g~n-~~~~~~l~~~-----~g~--~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 13 YPSFDKFLG-TEN-AELVYVLRHK-----HGQ--FIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCCCCCCCS-CCT-HHHHHHCCCC-----CCS--EEEEESSSTTTTCHHH
T ss_pred ccchhhcCc-Ccc-HHHHHHHHhc-----CCC--EEEEECCCCCCHHHHH
Confidence 456666333 333 3344433222 443 4566999999999997
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=79.44 E-value=0.62 Score=47.50 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=28.9
Q ss_pred CChhhHHhchHHHHHHHHcCcc-e--EEEeecccCCCCceee
Q 047843 244 ATQDDVFKDTQPLIRSVMDGYN-V--CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 244 asQeeVf~~v~plV~svLdGyN-~--~IfAYGQTGSGKTyTM 282 (648)
..+++..+.+...+..++.|.. . +++-||++|+|||+++
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3456666666666777766643 3 6889999999999997
No 55
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.43 E-value=2.7 Score=45.76 Aligned_cols=50 Identities=24% Similarity=0.383 Sum_probs=29.4
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHH-HHHHc--Cc--ceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLI-RSVMD--GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV-~svLd--Gy--N~~IfAYGQTGSGKTyTM 282 (648)
..+||.|-|-+..-+++-+.+ -|+- ...+. |. .-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 346777766543333343333 3332 12333 22 357899999999999875
No 56
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.40 E-value=0.96 Score=43.70 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=28.4
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHc---------CcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMD---------GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLd---------GyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+.+. +++-+.+..++..+.. .....|+-||++|+|||+..
T Consensus 4 ~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 4 SFKDVAGM----HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CTTSSCSC----HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhCCH----HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 46666653 4444444444444321 34457899999999999986
No 57
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=79.36 E-value=0.88 Score=45.28 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=16.6
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457899999999999986
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.26 E-value=0.58 Score=48.93 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=23.1
Q ss_pred hHHHHHHHH-cCcceEEEeecccCCCCceee
Q 047843 253 TQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 253 v~plV~svL-dGyN~~IfAYGQTGSGKTyTM 282 (648)
+...+..++ .|-..+|+-||++|+|||.+.
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 334444444 677789999999999999987
No 59
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.19 E-value=0.44 Score=46.46 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=28.0
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHH-----HHcCc----ceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRS-----VMDGY----NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~s-----vLdGy----N~~IfAYGQTGSGKTyTM 282 (648)
.++||.|.+.+. +-..+..++.. ++.++ ...|+-||++|+|||+.+
T Consensus 12 ~~~~~~i~g~~~----~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEE----AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHH----HHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHH----HHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 578898877543 33333332222 22222 223899999999999987
No 60
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=79.18 E-value=0.76 Score=44.35 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=20.8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.+ ++..++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677788887 577889999999873
No 61
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=79.17 E-value=0.61 Score=50.30 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=28.9
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|+||.... ..++...+..+..+... .|..-.+|-||++|+|||+.+
T Consensus 100 ~~~tfd~fv~-g~~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 100 PDYTFENFVV-GPGNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TTCSGGGCCC-CTTTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCChhhcCC-CCchHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 3578988542 22333444443333332 231346788999999999997
No 62
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.95 E-value=0.49 Score=45.84 Aligned_cols=26 Identities=38% Similarity=0.676 Sum_probs=21.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677888877 567899999999874
No 63
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.84 E-value=0.87 Score=49.07 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=34.8
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcc--eEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYN--VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN--~~IfAYGQTGSGKTyTM 282 (648)
.+.||.+.+ |+++.+.+..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456777775 67777777777777777764 36788999999999886
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.92 E-value=0.75 Score=46.58 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.7
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-||++|+|||+..
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36778999999999986
No 65
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.67 E-value=4.3 Score=43.90 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=30.2
Q ss_pred EEcceeeCCCCChhhHHhch-HHHH-HHHHc--Cc--ceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDT-QPLI-RSVMD--GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v-~plV-~svLd--Gy--N~~IfAYGQTGSGKTyTM 282 (648)
-+||.|-|-+.--+++-+.+ -|+. ...+. |. .-.|+-||+.|+|||+..
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 46777776544444444443 3443 22333 32 356899999999999875
No 66
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=77.45 E-value=0.92 Score=43.50 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=19.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.+ ++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 54 QTIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 34666778877 456789999999874
No 67
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=76.72 E-value=0.97 Score=43.07 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=20.5
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456777889875 66789999999874
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=76.14 E-value=1.1 Score=42.49 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=20.2
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 35677788877 556679999999875
No 69
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=75.94 E-value=0.81 Score=41.98 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.2
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
+-...++-||++|+|||+.+
T Consensus 36 ~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 36 KNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 33334899999999999986
No 70
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=75.81 E-value=1.3 Score=39.76 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=22.6
Q ss_pred hhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 247 DDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 247 eeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++....+...+..+.. .+..|+-||.+|+|||+..
T Consensus 10 s~~~~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 10 SAAIQEMNREVEAAAK-RTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp CHHHHHHHHHHHHHHT-CSSCEEEEEETTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCcEEEECCCCccHHHHH
Confidence 3444444445555443 3445777999999999875
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.43 E-value=0.81 Score=45.31 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=20.6
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.| ++..++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 45677788877 577899999999873
No 72
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.41 E-value=0.67 Score=46.92 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=28.5
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHHH-HHHc----CcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLIR-SVMD----GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV~-svLd----GyN~~IfAYGQTGSGKTyTM 282 (648)
.+.||.|.+.+..-+.+.+.+ .|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 356888776443333333332 12110 1111 23456899999999999986
No 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=75.10 E-value=1.1 Score=43.42 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=20.2
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.|+ +..++||||||.+.
T Consensus 52 ~~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456778888874 56679999999874
No 74
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=74.69 E-value=0.65 Score=43.23 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=19.0
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..+++|.+ ++..++||||||.+.
T Consensus 41 ~i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 41 VAQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 3455667766 456899999999986
No 75
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.12 E-value=1.4 Score=43.03 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=30.0
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHc---------CcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMD---------GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLd---------GyN~~IfAYGQTGSGKTyTM 282 (648)
.+.||.+.+. +++-+.+..++..+.. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGC----DEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSC----HHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCc----HHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 4678888774 4455444444443321 23446899999999999886
No 76
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=74.03 E-value=1.4 Score=45.29 Aligned_cols=26 Identities=38% Similarity=0.678 Sum_probs=21.6
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 46778889988 577899999999874
No 77
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.61 E-value=1.1 Score=45.84 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=28.5
Q ss_pred ChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 245 TQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 245 sQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
.+++..+.+...+..++.|. ..+|+-||++|+|||+++
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 45666666666666666554 458999999999999987
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=73.41 E-value=1 Score=46.15 Aligned_cols=41 Identities=29% Similarity=0.634 Sum_probs=25.9
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+++ |+++.+.+...| -.|--..++-||+.|+|||+++
T Consensus 23 ~~~~~~g----~~~~~~~L~~~i---~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 23 TLDEVYG----QNEVITTVRKFV---DEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp SGGGCCS----CHHHHHHHHHHH---HTTCCCCEEEECSSSSSHHHHH
T ss_pred cHHHhcC----cHHHHHHHHHHH---hcCCCceEEEECCCCCCHHHHH
Confidence 4666664 555555443333 3453223677999999999997
No 79
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=73.24 E-value=1.2 Score=43.07 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=19.0
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..+++|.|+ +..++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 45667788775 45679999999874
No 80
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.97 E-value=1.4 Score=47.63 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=21.8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+++..++..-...|.-.|+||||||.||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3455556555677889999999999997
No 81
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=72.78 E-value=1.2 Score=45.16 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.3
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|-.-.++++++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3567778884445788999999999773
No 82
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=72.63 E-value=1.4 Score=42.23 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=19.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.|+ +..++||||||.+.
T Consensus 53 ~~i~~~~~~~~~--l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 53 KAIPLGRCGLDL--IVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCCcHHHHH
Confidence 356667888774 56779999999873
No 83
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.61 E-value=0.82 Score=45.41 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=28.5
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHH-----HHcCc----ceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRS-----VMDGY----NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~s-----vLdGy----N~~IfAYGQTGSGKTyTM 282 (648)
..++||.|.+.+ ++...+..++.. ++.++ ...|+-||++|+|||+.+
T Consensus 35 ~~~~~~~i~g~~----~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCH----HHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChH----HHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 357788887654 333333333322 22222 223899999999999987
No 84
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=71.94 E-value=1.4 Score=43.63 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=28.5
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHH------HHcC---cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRS------VMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~s------vLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
...||.+.+. +++-+.+...+.. .+.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~----~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQ----DVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCC----HHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCCh----HHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4578888774 3443333322222 1122 3567899999999999886
No 85
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=71.78 E-value=1.5 Score=42.93 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=19.8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.++ +..++||||||.+.
T Consensus 72 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 356777888774 55679999999874
No 86
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=71.23 E-value=5.9 Score=46.25 Aligned_cols=83 Identities=23% Similarity=0.330 Sum_probs=46.2
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceeee------ec-ccCCCCcccCCCcEEEecCHHH-HH---HHHHhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTMI------RS-CASENGLNLPDATMHSVKSTAD-VL---QLMKLG 315 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTMi------~~-~~~~~g~~V~~lt~~~V~S~ee-vl---~lL~~G 315 (648)
-||.-+......++ ++.|-||+--|.+|||||.+.- -. .....+-. ..+.++ ++ -+|+
T Consensus 154 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~--------~~~ie~~il~snpiLE-- 223 (770)
T 1w9i_A 154 HIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG--------SGVLEQQILQANPILE-- 223 (770)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHH--
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcc--------cCcHHHHHHHHHHHHH--
Confidence 35554333333333 7999999999999999998851 11 11111100 122222 11 1221
Q ss_pred hhhhcccccccccCCCCceEEEEEEEE
Q 047843 316 ELNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 316 ~~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
.=--+.|..|..|||---.+.|+..
T Consensus 224 --AFGNAkT~rNdNSSRFGKfi~i~F~ 248 (770)
T 1w9i_A 224 --AFGNAKTTRNNNSSRFGKFIEIQFN 248 (770)
T ss_dssp --HHHEECCSSCTTEESSEEEEEEEEC
T ss_pred --HhCCCcCCCCCCcCCcceEEEEEEC
Confidence 1122568999999998777777763
No 87
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=71.20 E-value=1.4 Score=46.48 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+.+++.--...|.-.|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 344455444557888899999999997
No 88
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=71.17 E-value=1.7 Score=43.42 Aligned_cols=44 Identities=16% Similarity=0.291 Sum_probs=29.3
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHH--cCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVM--DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svL--dGyN~~IfAYGQTGSGKTyTM 282 (648)
.||.+.+ ++.+...+..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIG----QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCS----CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhC----HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 5666655 4455555555555444 234567888999999999886
No 89
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=70.81 E-value=8.4 Score=45.10 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=47.2
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee------eecccCCCCcccCCCcEEEecCHHH-H---HHHHHhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM------IRSCASENGLNLPDATMHSVKSTAD-V---LQLMKLGE 316 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM------i~~~~~~~g~~V~~lt~~~V~S~ee-v---l~lL~~G~ 316 (648)
-||.-+......++ ++.|-||+--|.+|||||.+. +-......+ . .+.++ + .-+|+ +-
T Consensus 138 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~----~------~~ie~~il~snpiLE-AF 206 (795)
T 1w7j_A 138 HIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSAS----E------ANVEEKVLASNPIME-SI 206 (795)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSS----S------SCHHHHHHHHHHHHH-HH
T ss_pred cHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCCC----c------cchHHHHHHHHHHHH-Hh
Confidence 35654433333333 689999999999999999885 111111100 0 12332 1 11221 11
Q ss_pred hhhcccccccccCCCCceEEEEEEEE
Q 047843 317 LNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 317 ~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---.+.|+..
T Consensus 207 ---GNAkT~rNdNSSRFGKfi~i~F~ 229 (795)
T 1w7j_A 207 ---GNAKTTRNDNSSRFGKYIEIGFD 229 (795)
T ss_dssp ---HEECCSSCTTEECSEEEEEEEEC
T ss_pred ---cCccCCCCCCccccceEEEEEEC
Confidence 12568899999998777777763
No 90
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.72 E-value=2 Score=43.48 Aligned_cols=44 Identities=25% Similarity=0.349 Sum_probs=31.2
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHH--cCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVM--DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svL--dGyN~~IfAYGQTGSGKTyTM 282 (648)
.||.+.+ ++.+.+.+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666554 5666666666666654 344567899999999999986
No 91
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=70.64 E-value=1 Score=42.72 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=19.3
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..+++|.|+ +..++||||||.+.
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 46667788775 56789999999874
No 92
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.51 E-value=0.86 Score=46.09 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=23.8
Q ss_pred hhhHHhchHHHHHHHHc-CcceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMD-GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLd-GyN~~IfAYGQTGSGKTyTM 282 (648)
+++..+.+...+..++. +...+++-||++|+|||+.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 44444444444444433 33457889999999999987
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=70.38 E-value=1.4 Score=42.59 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=19.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.++..+..|-+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 45566667754 567899999999764
No 94
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=69.79 E-value=2.3 Score=42.16 Aligned_cols=38 Identities=29% Similarity=0.383 Sum_probs=26.5
Q ss_pred ChhhHHhchHHHHHHHHcCc------ceEEEeecccCCCCceee
Q 047843 245 TQDDVFKDTQPLIRSVMDGY------NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 245 sQeeVf~~v~plV~svLdGy------N~~IfAYGQTGSGKTyTM 282 (648)
.|+.+.+.+...|.....|. ...++-||++|+|||++.
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence 45666666555555554432 367899999999999886
No 95
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=69.55 E-value=1.9 Score=39.75 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.1
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999886
No 96
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=68.92 E-value=7.4 Score=46.72 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=47.5
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee------eec-ccCCCCcccCCCcEEEecCHHH-H---HHHHHhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM------IRS-CASENGLNLPDATMHSVKSTAD-V---LQLMKLG 315 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM------i~~-~~~~~g~~V~~lt~~~V~S~ee-v---l~lL~~G 315 (648)
-||.-+......++ ++.|-||+--|.+|||||.+. +-. .....+-. ..+.++ + .-+|+ +
T Consensus 154 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~--------~~~ie~~il~snpiLE-A 224 (1010)
T 1g8x_A 154 HIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG--------SGVLEQQILQANPILE-A 224 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTT--------SSHHHHHHHHHHHHHH-H
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcc--------cchHHHHHHHHHHHHH-H
Confidence 46655433333333 799999999999999999885 111 11111100 022222 1 11221 1
Q ss_pred hhhhcccccccccCCCCceEEEEEEEE
Q 047843 316 ELNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 316 ~~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
=--+.|..|..|||---.+.|+..
T Consensus 225 ---FGNAkT~rN~NSSRFGK~i~i~F~ 248 (1010)
T 1g8x_A 225 ---FGNAKTTRNNNSSEFGKFIEIQFN 248 (1010)
T ss_dssp ---HHEECCSSCTTEECSEEEEEEEEC
T ss_pred ---hCCCcCCCCCCccccceEEEEEEC
Confidence 112568999999998777777763
No 97
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=68.79 E-value=6.7 Score=47.38 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHhchHHHHHHHH-cCcceEEEeecccCCCCceee---------eecccCCCCcccCCCcEEEecCHHHHHHHHHhhhhh
Q 047843 249 VFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM---------IRSCASENGLNLPDATMHSVKSTADVLQLMKLGELN 318 (648)
Q Consensus 249 Vf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM---------i~~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~n 318 (648)
||.-+......++ ++.|-||+--|.+|||||.+. +...... .+.++-+--..--...
T Consensus 139 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~-------------~~ie~~il~snpiLEA 205 (1080)
T 2dfs_A 139 IFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASE-------------ANVEEKVLASNPIMES 205 (1080)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTTCCTT-------------TCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHHHhhccCCCc-------------cchHHHHHHHHHHHHH
Q ss_pred hcccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeE
Q 047843 319 RAVSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLH 356 (648)
Q Consensus 319 R~~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~ 356 (648)
=--+.|..|..|||---.+.|+. +..|....+.|.
T Consensus 206 FGNAkT~rN~NSSRFGK~i~i~F---~~~g~i~Ga~i~ 240 (1080)
T 2dfs_A 206 IGNAKTTRNDNSSRFGKYIEIGF---DKRYRIIGANMR 240 (1080)
T ss_dssp HHEEEETTEEEEECSEEEEEEEE---CTTCCEEEEEEE
T ss_pred hcCCcCCCCCCccccceeEEEEE---CCCCCEeeecce
No 98
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=68.61 E-value=1.9 Score=44.11 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=21.9
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 4577788885556778899999999874
No 99
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=68.41 E-value=2 Score=44.23 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=24.7
Q ss_pred hHHhchHHHH-HHHHcC---cceEEEe--ecccCCCCceee
Q 047843 248 DVFKDTQPLI-RSVMDG---YNVCIFA--YGQTGSGKTHTM 282 (648)
Q Consensus 248 eVf~~v~plV-~svLdG---yN~~IfA--YGQTGSGKTyTM 282 (648)
+..+.+...+ ..+..| -..+++- ||+.|+|||+.+
T Consensus 29 ~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 29 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 3334444555 666666 4567888 999999999987
No 100
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=68.21 E-value=8.2 Score=44.53 Aligned_cols=83 Identities=19% Similarity=0.288 Sum_probs=47.5
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee------eecccCCCCcccCCCcEEEecCHHHH----HHHHHhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM------IRSCASENGLNLPDATMHSVKSTADV----LQLMKLGE 316 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM------i~~~~~~~g~~V~~lt~~~V~S~eev----l~lL~~G~ 316 (648)
-||.-+......++ ++.|-||+--|.+|||||.+. +-......+. .+.+.++. .-+|+ +-
T Consensus 76 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~--------~~~~i~~~il~snpiLE-AF 146 (697)
T 1lkx_A 76 HMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSP--------NGERISKMLLDSNPLLE-AF 146 (697)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCH--------HHHHHHHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCC--------ccccHHHHHHhcchHHH-Hh
Confidence 46655433333333 799999999999999999885 1111111111 01112211 11111 11
Q ss_pred hhhcccccccccCCCCceEEEEEEEE
Q 047843 317 LNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 317 ~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---.+.|+..
T Consensus 147 ---GNAkT~rNdNSSRFGKfi~i~F~ 169 (697)
T 1lkx_A 147 ---GNAKTLRNDNSSRFGKYMEMQFN 169 (697)
T ss_dssp ---HBBCCSSCSSCBCSEEEEEEEEC
T ss_pred ---cCcccCCCCCcchhheeEEEEEC
Confidence 12568899999998777777764
No 101
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.89 E-value=2.4 Score=37.98 Aligned_cols=20 Identities=20% Similarity=0.627 Sum_probs=16.5
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566889999999999875
No 102
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=67.77 E-value=2.5 Score=41.92 Aligned_cols=41 Identities=22% Similarity=0.460 Sum_probs=26.5
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+.+ |+++.+.+..++. .|....++-||++|+|||++.
T Consensus 23 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKRLKHYVK---TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp STTTCCS----CHHHHHHHHHHHH---HTCCCEEEEESCTTSSHHHHH
T ss_pred CHHHhhC----CHHHHHHHHHHHH---cCCCCeEEEECcCCCCHHHHH
Confidence 3555544 5666555443333 344334888999999999886
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=67.61 E-value=2 Score=44.17 Aligned_cols=26 Identities=35% Similarity=0.654 Sum_probs=20.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 45677888987 567789999999775
No 104
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=67.44 E-value=2.1 Score=46.47 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=30.5
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+||.++ .|+.+......+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~iv----Gq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYI----GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCC----SCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhC----CcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 355555 46777754444444455565568999999999999886
No 105
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=66.90 E-value=2.1 Score=43.19 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=21.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|-...++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 3567778884455678899999999864
No 106
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=66.78 E-value=2.5 Score=45.02 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCcee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
..+..++.|.+-.++..|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 356777788667788999999999977
No 107
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=66.67 E-value=2 Score=45.00 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=29.5
Q ss_pred eEEEcceeeCCCCChhhHHhchHHHHHHHH------c---CcceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDTQPLIRSVM------D---GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v~plV~svL------d---GyN~~IfAYGQTGSGKTyTM 282 (648)
..+.||.+.+ ++.+-+.+..++...+ . .-..+|+-||++|+|||+..
T Consensus 110 ~~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAG----QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCC----HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 3467888887 4444444433322211 2 22357899999999999886
No 108
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=66.40 E-value=4.8 Score=40.72 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=27.8
Q ss_pred ChhhHHhchHHHHHHHHcCc-----ceEEEeecccCCCCceee
Q 047843 245 TQDDVFKDTQPLIRSVMDGY-----NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 245 sQeeVf~~v~plV~svLdGy-----N~~IfAYGQTGSGKTyTM 282 (648)
|-+++...+..++..++.|+ -..|+-.|++|||||+..
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 34555555667777777664 356888999999999875
No 109
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=65.84 E-value=12 Score=44.19 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=47.9
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee------eec-ccCCCCcccCCCcEEEecCHHHH----HHHHHhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM------IRS-CASENGLNLPDATMHSVKSTADV----LQLMKLG 315 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM------i~~-~~~~~g~~V~~lt~~~V~S~eev----l~lL~~G 315 (648)
-||.-+......++ ++.|-||+--|.+|||||.+. +-. .....+..... ......+.++- .-+|+ +
T Consensus 151 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~-~~~~~~~ie~~il~snpiLE-A 228 (837)
T 1kk8_A 151 HLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA-SDKKEGSLEDQIIQANPVLE-A 228 (837)
T ss_dssp CHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC---------CCCHHHHHHHHHHHHH-H
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccc-cccccccHHHHHHHHHHHHH-H
Confidence 45654433333333 799999999999999999885 111 11111000000 00012233331 11221 1
Q ss_pred hhhhcccccccccCCCCceEEEEEEEE
Q 047843 316 ELNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 316 ~~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
=--+.|..|..|||---.+.|+..
T Consensus 229 ---FGNAkT~rNdNSSRFGKfi~i~F~ 252 (837)
T 1kk8_A 229 ---YGNAKTTRNNNSSRFGKFIRIHFG 252 (837)
T ss_dssp ---HHEECCSSCTTEESSEEEEEEEEC
T ss_pred ---hcCccCCCCCCCCCceeEEEEEEC
Confidence 122568999999998777777763
No 110
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=65.46 E-value=2.2 Score=43.62 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=20.2
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 45667778877 566789999999764
No 111
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.26 E-value=2 Score=44.22 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=26.6
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHH-cC-cceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVM-DG-YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svL-dG-yN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+|+ |+.+.+.+.-.|.... .| .--.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5677665 4555555444443321 12 1134666999999999987
No 112
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=64.70 E-value=9.1 Score=45.84 Aligned_cols=88 Identities=25% Similarity=0.400 Sum_probs=49.6
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee------eec-ccCCCCccc---CCCcEEEecCHHHHHHHHHhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM------IRS-CASENGLNL---PDATMHSVKSTADVLQLMKLGE 316 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM------i~~-~~~~~g~~V---~~lt~~~V~S~eevl~lL~~G~ 316 (648)
-||.-+......++ ++.|-||+--|.+|||||.+. +-. .....+-.. .+-.+..|-...-+++-+ |+
T Consensus 128 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~~~~~ie~~il~~npiLEAF--GN 205 (995)
T 2ycu_A 128 HVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAF--GN 205 (995)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHH--HE
T ss_pred hHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhcccCCccccccccccHHHHHHHHHHHHHHh--cC
Confidence 45654433333333 799999999999999999885 100 111110000 111111223334444433 22
Q ss_pred hhhcccccccccCCCCceEEEEEEEE
Q 047843 317 LNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 317 ~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
+.|..|..|||---.+.|+..
T Consensus 206 -----AkT~rN~NSSRFGK~i~i~F~ 226 (995)
T 2ycu_A 206 -----AKTVKNDNSSRFGKFIRINFD 226 (995)
T ss_dssp -----ECCSSCTTEESSEEEEEEEEC
T ss_pred -----ccCCCCCCCCccceEEEEEEC
Confidence 568899999998777777763
No 113
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=64.57 E-value=2.6 Score=42.35 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=25.9
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
+||.+.+ |+++...+...+. .|. ...++-||++|+|||+++
T Consensus 24 ~~~~ivg----~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 24 TIDECIL----PAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp STTTSCC----CHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHH
T ss_pred CHHHHhC----cHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHH
Confidence 4666554 4555444433333 333 356788999999999997
No 114
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=64.03 E-value=2.7 Score=41.38 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.6
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999986
No 115
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=63.99 E-value=2.7 Score=41.53 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=19.0
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..+++|.+ ++..++||||||.+.
T Consensus 24 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 4566678876 456689999999875
No 116
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=63.79 E-value=2.4 Score=41.50 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeeee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi~ 284 (648)
.+..++++.+ ++.+|+||+|||++.+.
T Consensus 101 ai~~~~~~~~--~ll~~~tG~GKT~~a~~ 127 (237)
T 2fz4_A 101 ALERWLVDKR--GCIVLPTGSGKTHVAMA 127 (237)
T ss_dssp HHHHHTTTSE--EEEEESSSTTHHHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCCCHHHHHHH
Confidence 3555667765 56678999999998643
No 117
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=62.74 E-value=1.4 Score=45.16 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=27.7
Q ss_pred EEcceeeCCCCChhhHHhchHHHHH------HHHcCc---ceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIR------SVMDGY---NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~------svLdGy---N~~IfAYGQTGSGKTyTM 282 (648)
.+||.|.+- +++-+.+...|. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~----~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGL----EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSC----HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCH----HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 467777764 444444333332 233332 246888999999999986
No 118
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=62.57 E-value=3 Score=42.87 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=20.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.|+ +..++||||||.+.
T Consensus 44 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 44 HAIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 346677888875 56789999999864
No 119
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=62.47 E-value=13 Score=43.59 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=47.4
Q ss_pred HHhchHHHHHHHH-cCcceEEEeecccCCCCceee---ee---c-ccCCCCcccCCCcEEEecCHHH-HH---HHHHhhh
Q 047843 249 VFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM---IR---S-CASENGLNLPDATMHSVKSTAD-VL---QLMKLGE 316 (648)
Q Consensus 249 Vf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM---i~---~-~~~~~g~~V~~lt~~~V~S~ee-vl---~lL~~G~ 316 (648)
||.-+......++ ++.|-||+.-|.+|||||.+. +. . .....+..-. +.....+.++ ++ -+|+ +-
T Consensus 154 ifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~--~~~~~~~ve~~il~snpiLE-AF 230 (783)
T 4db1_A 154 IFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKD--QSPGKGTLEDQIIQANPALE-AF 230 (783)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC---------CCSCHHHHHHHHHHHHH-HH
T ss_pred hhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCccccc--cccccccHHHHHHHhHHHHH-hc
Confidence 5554433333333 799999999999999999885 11 0 1100000000 0001123333 21 1222 11
Q ss_pred hhhcccccccccCCCCceEEEEEEEE
Q 047843 317 LNRAVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 317 ~nR~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---.+.|+..
T Consensus 231 ---GNAkT~rNdNSSRFGK~i~i~F~ 253 (783)
T 4db1_A 231 ---GNAKTVRNDNSSRFGKFIRIHFG 253 (783)
T ss_dssp ---HEECCSSCTTEECSEEEEEEEEC
T ss_pred ---cCcccCCCCCCCccceeEEEEEC
Confidence 12668899999998888888763
No 120
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=61.27 E-value=3.2 Score=45.63 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=19.0
Q ss_pred HHHHHHcCcceEEEeecccCCCCceeee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
++..+..|.+.++++ ++||||||.+++
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344444576665555 999999999974
No 121
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=61.05 E-value=3.2 Score=43.07 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..+++|.| ++..++||||||...
T Consensus 28 ~~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 28 LWAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 34666778876 568899999999854
No 122
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=61.02 E-value=2.4 Score=42.00 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=17.8
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..++.|.++.| .++||||||.+.
T Consensus 121 ai~~~l~~~~~ll--~~~tGsGKT~~~ 145 (282)
T 1rif_A 121 AVFEGLVNRRRIL--NLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHHHSEEEE--CCCTTSCHHHHH
T ss_pred HHHHHHhcCCeEE--EcCCCCCcHHHH
Confidence 3455566655433 899999999986
No 123
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=61.02 E-value=2.6 Score=42.33 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=15.2
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...+.-.|+||||||.++
T Consensus 25 g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SEEEEEECSTTCSHHHHH
T ss_pred CCEEEEECCCCccHHHHH
Confidence 456677899999999997
No 124
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=60.99 E-value=3.8 Score=41.54 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=23.3
Q ss_pred ChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 245 TQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 245 sQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+++.+.+...+.. ......++-||+.|+|||+++
T Consensus 20 g~~~~~~~L~~~l~~--~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 20 GQEHVLTALANGLSL--GRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCHHHHHHHHHHHHH--TCCCSEEEEESCTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHH
Confidence 355555554433332 223446789999999999987
No 125
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=60.86 E-value=3 Score=43.31 Aligned_cols=45 Identities=18% Similarity=0.280 Sum_probs=29.0
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHH---------HcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSV---------MDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~sv---------LdGyN~~IfAYGQTGSGKTyTM 282 (648)
..||.+.+ ++++-+.+..+|... +.+....|+-||++|+|||+.+
T Consensus 81 ~~~~~i~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAG----VEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCS----CHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCC----hHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 45777766 445544443333321 2344667899999999999986
No 126
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=60.69 E-value=2.4 Score=42.12 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=20.3
Q ss_pred HHHHHHcCc--ceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGy--N~~IfAYGQTGSGKTyTM 282 (648)
.+..++.|. .-||+-||+.|+|||+..
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 345556663 347999999999999884
No 127
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=60.35 E-value=4.2 Score=41.56 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHcCc---ceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGY---NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGy---N~~IfAYGQTGSGKTyTM 282 (648)
...+..+++|. .-||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 45678888887 458999999999999885
No 128
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=58.70 E-value=3.3 Score=44.95 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=19.8
Q ss_pred HHHHHcCcceEEEeecccCCCCceee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+..++.|.+-.++..++||||||.+.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 46667774455678899999999874
No 129
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=58.68 E-value=9 Score=44.77 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=46.2
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee------eecccCCCCcccCCCcEEEecC-HHHHHHHHHhhhhhh
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM------IRSCASENGLNLPDATMHSVKS-TADVLQLMKLGELNR 319 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM------i~~~~~~~g~~V~~lt~~~V~S-~eevl~lL~~G~~nR 319 (648)
-||.-+......++ ++.|-||+--|.+|||||.+. +-... ..+- .|.. .-+..-+|+ +-
T Consensus 122 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~-~~~~--------~ie~~il~snpiLE-AF--- 188 (784)
T 2v26_A 122 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESY-GTGQ--------DIDDRIVEANPLLE-AF--- 188 (784)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-C--------------CHHHHTHHHHH-HH---
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHhhc-CCCC--------cHHHHHHHHHHHHH-Hh---
Confidence 45655433334433 699999999999999999885 11111 1110 1110 111112221 11
Q ss_pred cccccccccCCCCceEEEEEEEE
Q 047843 320 AVSSTAINNRSSRSHSVLTIHVH 342 (648)
Q Consensus 320 ~~~sT~~N~~SSRSH~IftI~V~ 342 (648)
--+.|..|..|||---.+.|+..
T Consensus 189 GNAKT~rNdNSSRFGKfi~i~F~ 211 (784)
T 2v26_A 189 GNAKTVRNNNSSRFGKFVEIHFN 211 (784)
T ss_dssp HEECCSSCTTEECSEEEEEEEEC
T ss_pred CCCcCCCCCCcchhheEEEEEEe
Confidence 12568899999998777777763
No 130
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=58.45 E-value=4.3 Score=44.07 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=21.2
Q ss_pred HHHHHHHcCcceEEEeecccCCCCcee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
..|..++.|-+-.++..++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 467777866555678889999999987
No 131
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=57.77 E-value=4.3 Score=44.63 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=30.2
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHH-----cC----cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVM-----DG----YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svL-----dG----yN~~IfAYGQTGSGKTyTM 282 (648)
.++||.|.+ ++++-+.+..++..+- .+ ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G----~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGG----AEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCS----CHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCC----cHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 467888776 4555555555554432 11 2345899999999999886
No 132
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=57.67 E-value=1.9 Score=42.50 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=25.1
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+.+ |+++.+.+...+. .|....++-||++|+|||++.
T Consensus 15 ~~~~~~g----~~~~~~~l~~~l~---~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVG----QDEVIQRLKGYVE---RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCS----CHHHHHHHHTTTT---TTCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhC----CHHHHHHHHHHHh---CCCCCeEEEECcCCcCHHHHH
Confidence 4555543 4454444333222 344334888999999999886
No 133
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=57.38 E-value=3.8 Score=41.53 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.+ ++..++||||||.+.
T Consensus 37 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 45677788877 456679999999875
No 134
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=57.10 E-value=4.1 Score=43.46 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=19.6
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 4666778877 456789999999874
No 135
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=56.07 E-value=5 Score=42.47 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=20.3
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.| +++.++||||||.+.
T Consensus 85 ~ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCCchHHH
Confidence 45667788877 467789999999864
No 136
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=55.96 E-value=23 Score=36.47 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=47.2
Q ss_pred EEEeecccCCCCceee---eecc--cCCCCcc---------------------cCCCcEEEecCHHHHHHHHHhhhhhhc
Q 047843 267 CIFAYGQTGSGKTHTM---IRSC--ASENGLN---------------------LPDATMHSVKSTADVLQLMKLGELNRA 320 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM---i~~~--~~~~g~~---------------------V~~lt~~~V~S~eevl~lL~~G~~nR~ 320 (648)
.|...|.+|||||..+ .+.. ....|.. +.......+.+.+++...+.... .+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~-~~~ 114 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET-DRE 114 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH-HHT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH-HHh
Confidence 5777899999999886 2211 1111111 11111233456777776665332 222
Q ss_pred ccccccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCcccCC
Q 047843 321 VSSTAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERVDK 368 (648)
Q Consensus 321 ~~sT~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~~k 368 (648)
.+. + ..-+.-.+.+.+...+. ..|.|||++|-++...
T Consensus 115 ~g~---~--~~~s~~~i~l~i~~~~~------~~l~lvDtPG~~~~~~ 151 (360)
T 3t34_A 115 TGR---S--KAISSVPIHLSIYSPNV------VNLTLIDLPGLTKVAV 151 (360)
T ss_dssp SCT---T--CCCCCSCEEEEEEETTS------CSEEEEECCCBCSSCC
T ss_pred cCC---C--CCcccceEEEEEeCCCC------CCeEEEECCCCCcCCc
Confidence 221 1 12234455566643321 2599999999987643
No 137
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.83 E-value=2.7 Score=42.62 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=20.1
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.|.++ +..++||||||.+.
T Consensus 50 ~~i~~i~~~~~~--lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 50 RAIMPIIEGHDV--LAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHHTCCE--EECCCSSHHHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456677788774 56789999999874
No 138
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.80 E-value=4.4 Score=41.21 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=23.1
Q ss_pred hHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 248 DVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 248 eVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.....+...+..+. ..+..|+-||.+|+|||+..
T Consensus 9 ~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 9 PAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 33444444444443 45678889999999999876
No 139
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.68 E-value=3 Score=43.95 Aligned_cols=19 Identities=42% Similarity=0.506 Sum_probs=15.9
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
-...|.-.|+||||||.+|
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456778899999999997
No 140
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.38 E-value=3.5 Score=41.43 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=18.8
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+...+..|.-..++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 333344453334888999999999886
No 141
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=55.17 E-value=5.3 Score=37.26 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=17.0
Q ss_pred cCcceEEEeecccCCCCceeee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTMi 283 (648)
.+....|+-.|.+|+|||..+.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~ 30 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLT 30 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3445678899999999997763
No 142
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=55.11 E-value=4.6 Score=42.85 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=19.2
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..++.|.|+ +..++||||||.+.
T Consensus 12 ~i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 12 LALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCChHHHHH
Confidence 45667788774 56789999999874
No 143
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.05 E-value=1.9 Score=43.65 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=24.5
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+||.+.+ |+++.+.+...+...-.+.+ ++-||++|+|||+++
T Consensus 12 ~~~~~vg----~~~~~~~l~~~~~~~~~~~~--~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 12 SLNALSH----NEELTNFLKSLSDQPRDLPH--LLLYGPNGTGKKTRC 53 (354)
T ss_dssp SGGGCCS----CHHHHHHHHTTTTCTTCCCC--EEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHhhCCCCCe--EEEECCCCCCHHHHH
Confidence 4666554 55555443332211112223 778999999999987
No 144
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=54.73 E-value=4.3 Score=44.93 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=15.8
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.|.+ |.-.|+||||||.||
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 6766 566799999999997
No 145
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=53.98 E-value=4.8 Score=40.91 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=27.8
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHH------HHHcCc---ceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIR------SVMDGY---NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~------svLdGy---N~~IfAYGQTGSGKTyTM 282 (648)
...||.|.+ ++++-+.+..+|. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G----~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAG----LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcC----hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356787776 3444444333332 122222 346899999999999886
No 146
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=53.73 E-value=4.8 Score=40.13 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=18.7
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..++.|.. .++..++||||||.+.
T Consensus 36 ~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 4566677743 3456799999999885
No 147
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=52.93 E-value=4.8 Score=45.29 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++..-..+ +-.|+.|||||+|+
T Consensus 196 ~AV~~al~~~~~~-lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 196 EAVLFALSQKELA-IIHGPPGTGKTTTV 222 (646)
T ss_dssp HHHHHHHHCSSEE-EEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCce-EEECCCCCCHHHHH
Confidence 3566666544444 45699999999998
No 148
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=52.46 E-value=6 Score=45.24 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=27.8
Q ss_pred ChhhHHhchHHHHHHHHcCcc------eEEEeecccCCCCceee
Q 047843 245 TQDDVFKDTQPLIRSVMDGYN------VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 245 sQeeVf~~v~plV~svLdGyN------~~IfAYGQTGSGKTyTM 282 (648)
.|+++-+.+...+.....|.. +.++-||+||+|||++.
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 466666666566666665554 37899999999999986
No 149
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=52.08 E-value=7.6 Score=43.47 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=20.3
Q ss_pred HHHHHHHcCcceEEEeecccCCCCcee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
.+|..++.|.+ +++.++||+|||.+
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHH
Confidence 45777888988 56788999999975
No 150
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=52.07 E-value=5 Score=41.33 Aligned_cols=18 Identities=44% Similarity=0.523 Sum_probs=15.3
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456788999999999975
No 151
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=51.52 E-value=7.2 Score=44.45 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=25.6
Q ss_pred hhhHHhchHHHHHHHHcCcc------eEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGYN------VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGyN------~~IfAYGQTGSGKTyTM 282 (648)
|+++-+.+...+.....|.. +.++-||++|+|||++.
T Consensus 463 ~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 45555555445555555653 57899999999999885
No 152
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=51.08 E-value=5.2 Score=42.34 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceeee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
..|..++.|.+ ++..|+||||||.+.+
T Consensus 100 ~ai~~i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 100 KALERWLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp HHHHHHTTTTE--EEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCC--EEEEeCCCCCHHHHHH
Confidence 34566677755 5667899999999863
No 153
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.03 E-value=6.9 Score=45.54 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=27.1
Q ss_pred hhhHHhchHHHHHHHHcCcc------eEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGYN------VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGyN------~~IfAYGQTGSGKTyTM 282 (648)
|+++...+...|..+..|.. ..|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 56666666666666655532 68999999999999885
No 154
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=50.45 E-value=4 Score=47.55 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=27.4
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.||.|++. ++. +..+++.+..+....++-||++|+|||+.+
T Consensus 168 ~ld~viGr----~~~---i~~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 168 KLDPVIGR----DEE---IRRVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CSCCCCSC----HHH---HHHHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred CCcccCCc----HHH---HHHHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 46666653 322 344555555566556788999999999987
No 155
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=50.42 E-value=5.8 Score=44.20 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.3
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+|..+++|.| ++..++||||||.+.
T Consensus 14 ~~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 14 EVAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 35667778877 467799999999875
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.23 E-value=4.1 Score=44.55 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=28.4
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHH----cC----------cceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVM----DG----------YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svL----dG----------yN~~IfAYGQTGSGKTyTM 282 (648)
+|+.+.+ ++++.+.+...+.... .| ..-.++-||++|+|||++.
T Consensus 37 ~~~dliG----~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 37 NLQQVCG----NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CHHHhcC----CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 4666665 4555555555444432 11 2357888999999999986
No 157
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=50.20 E-value=5 Score=41.50 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=15.7
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457889999999999886
No 158
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=49.63 E-value=7.2 Score=42.86 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred HHHHHHHcCcceEEEeecccCCCCcee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
..|..++.|-+--+++.++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 467777855445567888999999986
No 159
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=49.43 E-value=3.5 Score=41.62 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=17.1
Q ss_pred HHHHcCcceEEEeecccCCCCceee
Q 047843 258 RSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 258 ~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..|. .|+-||++|+|||+.+
T Consensus 41 ~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHHcCC--eEEEECCCCCcHHHHH
Confidence 3334443 5778999999999986
No 160
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=49.29 E-value=13 Score=36.45 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=21.0
Q ss_pred HHHHHHHHcCcc-----eEEEeecccCCCCceee
Q 047843 254 QPLIRSVMDGYN-----VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLdGyN-----~~IfAYGQTGSGKTyTM 282 (648)
..++..++.|+. ..|+-.|+.|||||+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 445566665543 46889999999999764
No 161
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=48.80 E-value=5.8 Score=44.53 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHcCcceEEEeecccCCCCceee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|..++.| ..++..|++|||||+|+
T Consensus 158 i~~~l~~--~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 158 AAVALTR--RISVISGGPGTGKTTTV 181 (608)
T ss_dssp HHHHHTB--SEEEEECCTTSTHHHHH
T ss_pred HHHHhcC--CCEEEEeCCCCCHHHHH
Confidence 4445543 46788899999999997
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.80 E-value=4.8 Score=39.74 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=24.4
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+.+.+ |+++.+.+... +-.|.-..++-||+.|+|||++.
T Consensus 19 ~~~~~~g----~~~~~~~l~~~---l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 19 VLSDIVG----NKETIDRLQQI---AKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SGGGCCS----CTHHHHHHHHH---HHSCCCCCEEEECSTTSSHHHHH
T ss_pred CHHHHHC----CHHHHHHHHHH---HHcCCCCeEEEECcCCCCHHHHH
Confidence 3555443 44444443332 23343333888999999999886
No 163
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=48.64 E-value=5.5 Score=40.82 Aligned_cols=25 Identities=20% Similarity=0.118 Sum_probs=18.9
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..+..++.| .++..++||+|||.+.
T Consensus 16 ~~i~~~~~~---~~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 16 VIYAKCKET---NCLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHHHGGGS---CEEEECCTTSCHHHHH
T ss_pred HHHHHHhhC---CEEEEcCCCCCHHHHH
Confidence 346667778 3456689999999987
No 164
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=48.32 E-value=9.5 Score=39.09 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.6
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36677899999999997
No 165
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=47.93 E-value=7.9 Score=43.10 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.3
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+|..++.|.|+ +..++||||||...
T Consensus 21 ~i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 21 LALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHcCCCE--EEEcCCCchHHHHH
Confidence 45667788874 57789999999864
No 166
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=47.41 E-value=6.3 Score=37.30 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=21.1
Q ss_pred HHHHHHHcC-c--ceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDG-Y--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdG-y--N~~IfAYGQTGSGKTyTM 282 (648)
+-++.++.| + ...+.-+|++|||||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 457777754 3 346677899999999987
No 167
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=47.37 E-value=4.9 Score=43.07 Aligned_cols=25 Identities=16% Similarity=0.221 Sum_probs=19.7
Q ss_pred HHHHHHcCcceEEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
+|..+++|.+. ++..|+||||||..
T Consensus 11 ~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 11 VDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 35667888775 45779999999997
No 168
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=47.31 E-value=5.4 Score=35.18 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999874
No 169
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=46.44 E-value=11 Score=39.23 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=15.0
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346667899999999997
No 170
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=46.42 E-value=7.9 Score=37.46 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=18.1
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+++.+-.|--++| .|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~~l--iG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVFG--LGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEEE--ECCTTSSTTHHH
T ss_pred HHHhccCCCEEEE--ECCCCCCHHHHH
Confidence 4555556655554 799999999886
No 171
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=45.34 E-value=5 Score=36.97 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=13.9
Q ss_pred EEEeecccCCCCceeee
Q 047843 267 CIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi 283 (648)
++.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45668999999998863
No 172
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=45.08 E-value=9.1 Score=43.47 Aligned_cols=44 Identities=32% Similarity=0.547 Sum_probs=30.6
Q ss_pred EEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 234 FQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 234 F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|.+.. |.|...|..-+.. ++..+-.|... ....|.||||||+||
T Consensus 2 ~~~~~-~~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~ 45 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTM 45 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHH
Confidence 44444 4788888877654 45666667533 345699999999998
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=44.41 E-value=7.9 Score=40.17 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.8
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-||++|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 35888999999999986
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=44.37 E-value=7.6 Score=36.11 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=21.4
Q ss_pred HHHHHHHc-Ccc--eEEEeecccCCCCceee
Q 047843 255 PLIRSVMD-GYN--VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLd-GyN--~~IfAYGQTGSGKTyTM 282 (648)
+-++.++. |+. ..+.-+|.+|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 34677775 553 46788999999999886
No 175
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=44.22 E-value=6.4 Score=41.21 Aligned_cols=20 Identities=40% Similarity=0.481 Sum_probs=15.3
Q ss_pred HcCcceEEEeecccCCCCceee
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTM 282 (648)
-.|.+.+| .|+||||||+++
T Consensus 173 ~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEEE--EESSSSCHHHHH
T ss_pred hcCCEEEE--ECCCCCCHHHHH
Confidence 36665544 499999999987
No 176
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=43.87 E-value=11 Score=41.73 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=29.6
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHH-----cCc----ceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVM-----DGY----NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svL-----dGy----N~~IfAYGQTGSGKTyTM 282 (648)
.++||.|.+ ++++-..+..++..+- ..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G----~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAG----AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCS----CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCC----cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 467887776 4455555555554432 221 234899999999999987
No 177
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=43.40 E-value=7.8 Score=41.56 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 243 TATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 243 ~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+..|.+++..+. ..+-+| +..++-.|..|||||+++
T Consensus 27 n~~Q~~av~~~~---~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM---KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH---HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH---HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 446777766542 222333 347888999999999887
No 178
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=43.34 E-value=55 Score=28.72 Aligned_cols=42 Identities=7% Similarity=0.228 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047843 130 DLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYH 171 (648)
Q Consensus 130 ~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 171 (648)
+|...+..+...++.....+.++++++..+++.++.....+.
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 566777777778888888888888888888887776654444
No 179
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=43.28 E-value=5 Score=41.88 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.7
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..++-.|+||||||++|
T Consensus 36 ~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 33456799999999987
No 180
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=43.23 E-value=5.2 Score=40.13 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=25.1
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHH-HHHHcCcc----eEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLI-RSVMDGYN----VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV-~svLdGyN----~~IfAYGQTGSGKTyTM 282 (648)
..+||.|-+.+.-.+++.+.+ .|+- ..++++++ ..|+-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777666544444444432 3322 12333332 22889999999999886
No 181
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=42.86 E-value=6.1 Score=42.44 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=28.5
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHH------HHHcC---cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIR------SVMDG---YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~------svLdG---yN~~IfAYGQTGSGKTyTM 282 (648)
...||.|.+ ++++-+.+...|. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G----~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAG----LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCS----CHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcC----HHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 456787776 4445444433332 12233 2356888999999999986
No 182
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.68 E-value=13 Score=40.23 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=26.6
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.||.|.+ +++... .++..+-.+....++-||++|+|||+..
T Consensus 178 ~ld~iiG----r~~~i~---~l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 178 SLDPVIG----RSKEIQ---RVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp CSCCCCC----CHHHHH---HHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccC----cHHHHH---HHHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 4666665 333333 3444444455666788999999999986
No 183
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.68 E-value=1.7e+02 Score=26.26 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 126 KELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMS 164 (648)
Q Consensus 126 ~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~ 164 (648)
.++..|+..|.....+..+|+.+|...-++...++.++.
T Consensus 13 ~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~ 51 (112)
T 1x79_B 13 LMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALV 51 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667777777777776666654444444444443
No 184
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=42.33 E-value=1.9e+02 Score=26.07 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhc
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDL 187 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~el 187 (648)
...+++....++..|+..+..++.|......+|+..+.++...+.+-... -+..+.+...|-.++.++
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~---~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL---RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888888888888877777776666554322 122334444555555544
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=41.83 E-value=7.8 Score=36.07 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=18.6
Q ss_pred HHHHHHc-Cc--ceEEEeecccCCCCceee
Q 047843 256 LIRSVMD-GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLd-Gy--N~~IfAYGQTGSGKTyTM 282 (648)
-++.++. |+ ...+.-+|++|||||+.+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 3556664 33 234556899999999887
No 186
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.78 E-value=6.1 Score=36.53 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=12.9
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3445699999999886
No 187
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=41.46 E-value=5.2 Score=42.28 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.6
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 556788999999999986
No 188
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=40.77 E-value=12 Score=41.08 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=16.9
Q ss_pred CcceEEEeecccCCCCceee
Q 047843 263 GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 263 GyN~~IfAYGQTGSGKTyTM 282 (648)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999986
No 189
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=40.55 E-value=15 Score=38.83 Aligned_cols=17 Identities=35% Similarity=0.642 Sum_probs=14.7
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.+|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999997
No 190
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=40.41 E-value=1.2e+02 Score=25.40 Aligned_cols=48 Identities=13% Similarity=0.215 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMS 164 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~ 164 (648)
..+-++..+..|..|++.+..+-+|+...|..++.++..++.++....
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 345667777889999999999999999999999999988888777643
No 191
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=40.26 E-value=8.8 Score=44.68 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=27.4
Q ss_pred CCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 241 GPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 241 ~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..-|.+++..+ ....-.|....++..|+||||||...
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4566677776654 33444566566788999999999875
No 192
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=40.12 E-value=8 Score=34.69 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.3
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35788999999999874
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=40.04 E-value=11 Score=35.34 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=20.3
Q ss_pred HHHHHHHc-Cc--ceEEEeecccCCCCceee
Q 047843 255 PLIRSVMD-GY--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLd-Gy--N~~IfAYGQTGSGKTyTM 282 (648)
+-++.++. |+ .-.+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 44667774 44 245677899999999887
No 194
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=39.91 E-value=9.8 Score=42.69 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=18.1
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|..++.+ ..++-.|+.|||||+|+
T Consensus 188 av~~~l~~--~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 188 AVKTVLQR--PLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp HHHHHHTC--SEEEEECCTTSCHHHHH
T ss_pred HHHHHhcC--CCeEEECCCCCCHHHHH
Confidence 45555542 34567899999999997
No 195
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=39.82 E-value=8.8 Score=41.03 Aligned_cols=25 Identities=8% Similarity=-0.031 Sum_probs=17.8
Q ss_pred HHHHHcCcceEEEeecccCCCCceeee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
|..++.|.+ ++..|+||||||.+.+
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 444555644 4667999999999863
No 196
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=39.66 E-value=11 Score=43.32 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=20.2
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.|.|+ +..++||||||.+.
T Consensus 255 ~~i~~~l~~~~~--ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 255 ELAQPAINGKNA--LICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHHhCCCE--EEEeCCCChHHHHH
Confidence 356677888774 56789999999875
No 197
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=39.64 E-value=8.2 Score=35.19 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999764
No 198
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.59 E-value=1.5e+02 Score=26.63 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047843 129 VDLKDLLSRTKKEFKDLELQLHS 151 (648)
Q Consensus 129 ~~Lk~~~~~~~~e~~~l~~~~~~ 151 (648)
.+|+.....+..|+++++..+..
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 199
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.45 E-value=98 Score=23.69 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 118 RQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQ 159 (648)
Q Consensus 118 ~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~ 159 (648)
.+-++.-+..+..|++.+..+-+|+...+..++.++..++.+
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777888899999999999999998888877776543
No 200
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=39.26 E-value=7 Score=37.06 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999987
No 201
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=39.02 E-value=6.5 Score=39.34 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=17.2
Q ss_pred ceEEEeecccCCCCceeeee
Q 047843 265 NVCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTMi~ 284 (648)
...||..|..|+||||+|+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 46799999999999999853
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=38.65 E-value=7.2 Score=39.68 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=16.9
Q ss_pred HHHcCcceEEEeecccCCCCceee
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+++|++..|.-.|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999876
No 203
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=38.61 E-value=7.2 Score=36.04 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999886
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=38.24 E-value=7 Score=42.18 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=20.0
Q ss_pred HHcCcceEEEeecccCCCCceee
Q 047843 260 VMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 260 vLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+++|++..|.-.|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 67899999999999999999776
No 205
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=37.97 E-value=8.6 Score=42.46 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.0
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
.++.++-.|..|||||+|+
T Consensus 21 ~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CSSCEEEEECTTSCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHH
Confidence 3556778899999999998
No 206
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=37.88 E-value=7.4 Score=35.60 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.1
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|.-.|..|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999885
No 207
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=37.84 E-value=9 Score=39.10 Aligned_cols=16 Identities=50% Similarity=0.870 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|+|||+|+
T Consensus 107 vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTL 122 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555799999999997
No 208
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=37.69 E-value=16 Score=39.62 Aligned_cols=17 Identities=47% Similarity=0.589 Sum_probs=14.2
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|.+|||||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45666699999999997
No 209
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=37.43 E-value=10 Score=40.37 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999884
No 210
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=37.31 E-value=15 Score=43.74 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHcCcceEEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
.|..++.|.+ ++..|+||||||.+
T Consensus 47 aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 47 AVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHcCCC--EEEEECCCCcHHHH
Confidence 4666778865 67789999999954
No 211
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.06 E-value=9.6 Score=34.42 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.4
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999874
No 212
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=37.01 E-value=15 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.7
Q ss_pred HHHHHHHcCcceEEEeecccCCCCce
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTH 280 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTy 280 (648)
..+..+++|.| ++..|+||||||.
T Consensus 63 ~ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 63 MWAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCCHHH
Confidence 35667788876 4678899999994
No 213
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=36.73 E-value=15 Score=44.44 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=47.4
Q ss_pred hHHhchHHHHHHHH-cCcceEEEeecccCCCCceee---ee---cccCCCCcccCCCcEEEecCHHHHHHHHHhhhhhhc
Q 047843 248 DVFKDTQPLIRSVM-DGYNVCIFAYGQTGSGKTHTM---IR---SCASENGLNLPDATMHSVKSTADVLQLMKLGELNRA 320 (648)
Q Consensus 248 eVf~~v~plV~svL-dGyN~~IfAYGQTGSGKTyTM---i~---~~~~~~g~~V~~lt~~~V~S~eevl~lL~~G~~nR~ 320 (648)
-||.-+......++ ++.|-||+.-|.+|||||.+. +. ... ..|-.+. .-.-+..-+|+ +- -
T Consensus 126 HIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~-~~~~~ie-------~~Il~snpiLE-AF---G 193 (1052)
T 4anj_A 126 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESY-GTGQDID-------DRIVEANPLLE-AF---G 193 (1052)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CC---CT-------THHHHTHHHHH-HH---H
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhc-CCCccHH-------HHHHHHHHHHH-hc---c
Confidence 46665544444444 799999999999999999885 11 111 1111111 00111112221 11 1
Q ss_pred ccccccccCCCCceEEEEEEE
Q 047843 321 VSSTAINNRSSRSHSVLTIHV 341 (648)
Q Consensus 321 ~~sT~~N~~SSRSH~IftI~V 341 (648)
-+.|..|..|||---.+.|+.
T Consensus 194 NAKT~rNdNSSRFGK~iel~F 214 (1052)
T 4anj_A 194 NAKTVRNNNSSRFGKFVEIHF 214 (1052)
T ss_dssp EECCSSCTTEESSEEEEEEEE
T ss_pred CCCCCCCCCcCCceeEEEEEE
Confidence 256889999999888888876
No 214
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=36.28 E-value=13 Score=43.81 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=20.1
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.|.|+ +..++||||||.+.
T Consensus 255 ~ai~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 255 ELAQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCE--EEEeCCCchHHHHH
Confidence 356667889874 56789999999885
No 215
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=36.13 E-value=11 Score=35.64 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=18.7
Q ss_pred HHHHHcC-c--ceEEEeecccCCCCceee
Q 047843 257 IRSVMDG-Y--NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdG-y--N~~IfAYGQTGSGKTyTM 282 (648)
++.++.| + ...+.-+|++|||||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4666543 3 345677899999999985
No 216
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.11 E-value=9.3 Score=34.80 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.9
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999875
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=36.05 E-value=8.7 Score=38.63 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=15.6
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
|+-+|.-.|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3556778899999999886
No 218
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=35.79 E-value=8.6 Score=35.46 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999886
No 219
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.70 E-value=2.4e+02 Score=25.18 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 120 LLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEM 163 (648)
Q Consensus 120 ~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~ 163 (648)
-++..+.+|..++.....+...+.+.+..+...+..+...+..+
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~l 87 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAEL 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555554444444444455444444444444444433
No 220
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=35.54 E-value=7.9 Score=35.87 Aligned_cols=15 Identities=33% Similarity=0.665 Sum_probs=12.4
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344799999999987
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=35.50 E-value=18 Score=39.52 Aligned_cols=18 Identities=39% Similarity=0.567 Sum_probs=15.6
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-.|.+|+|||+|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 457788999999999997
No 222
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=35.32 E-value=2.4e+02 Score=25.29 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEM 163 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~ 163 (648)
...-++..+.+|..++.....+...+.+++..+...+..+...+..+
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~l 89 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSV 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555555555554444444444333
No 223
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.26 E-value=2.6e+02 Score=27.14 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047843 117 HRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAA 167 (648)
Q Consensus 117 ~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~ 167 (648)
++..+.....++.+|+..+......-.+|+..+..++.....+...+....
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~ 65 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN 65 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666667666666666666655443
No 224
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=35.06 E-value=9.8 Score=41.68 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=19.5
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+|..+++|.++ +..++||||||.+.
T Consensus 32 ~~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 356777889875 45679999999753
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=35.04 E-value=12 Score=41.55 Aligned_cols=16 Identities=44% Similarity=0.675 Sum_probs=14.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5667899999999997
No 226
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=34.90 E-value=11 Score=40.36 Aligned_cols=15 Identities=33% Similarity=0.297 Sum_probs=12.6
Q ss_pred EEEeecccCCCCcee
Q 047843 267 CIFAYGQTGSGKTHT 281 (648)
Q Consensus 267 ~IfAYGQTGSGKTyT 281 (648)
-++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 356779999999988
No 227
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=34.86 E-value=8 Score=36.52 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.2
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999987
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.85 E-value=19 Score=41.07 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=26.8
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.||.|.+ +++..+ .++..+..+....++-||++|+|||...
T Consensus 178 ~ld~iiG----~~~~i~---~l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 178 SLDPVIG----RSKEIQ---RVIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp CSCCCCC----CHHHHH---HHHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred CCCCccC----chHHHH---HHHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 4565555 333333 3444444566667889999999999875
No 229
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=34.77 E-value=14 Score=42.13 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=26.7
Q ss_pred EcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 235 QFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 235 ~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.||.|.+ +++.. ..+++.+.......++-||++|+|||+.+
T Consensus 184 ~~d~~iG----r~~~i---~~l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 184 GIDPLIG----REKEL---ERAIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp CSCCCCS----CHHHH---HHHHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred CCCCccC----CHHHH---HHHHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 4666655 33332 33444445555666788999999999886
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=34.63 E-value=9.1 Score=36.28 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.+.-.|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4455899999999987
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.33 E-value=9.6 Score=42.01 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=29.5
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHHH-HHHcCc----ceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLIR-SVMDGY----NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV~-svLdGy----N~~IfAYGQTGSGKTyTM 282 (648)
.-+||.|-|-+.--+++.+.+ -|+.. ..+.++ --.|+-||+.|+|||++.
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 356777766543333343333 33321 233332 457899999999999875
No 232
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=34.26 E-value=13 Score=34.86 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=19.8
Q ss_pred HHHHHHHHc---CcceEEEeecccCCCCceee
Q 047843 254 QPLIRSVMD---GYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 254 ~plV~svLd---GyN~~IfAYGQTGSGKTyTM 282 (648)
..+++.++. +-...|.-.|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 344555553 23356778899999999875
No 233
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=34.17 E-value=12 Score=40.09 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=15.3
Q ss_pred HcCcceEEEeecccCCCCceee
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTM 282 (648)
++|.| ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 45555 467899999999883
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=33.95 E-value=9.5 Score=35.05 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|+.|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4556799999999986
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=33.93 E-value=11 Score=35.95 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=9.0
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445799999999886
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=33.86 E-value=9.5 Score=35.80 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445899999999986
No 237
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=33.60 E-value=12 Score=34.99 Aligned_cols=16 Identities=44% Similarity=0.519 Sum_probs=13.8
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999874
No 238
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=33.20 E-value=11 Score=43.25 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=17.1
Q ss_pred HHHcCcceEEEeecccCCCCceeee
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTMi 283 (648)
..++|- .|+..|+||||||+.++
T Consensus 151 r~l~rk--~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 151 RAMQRK--IIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp HTSCCE--EEEEECCTTSSHHHHHH
T ss_pred HhcCCC--EEEEEcCCCCCHHHHHH
Confidence 345664 46788999999999653
No 239
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=33.18 E-value=11 Score=34.01 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.9
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999874
No 240
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=33.18 E-value=1.7e+02 Score=24.34 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047843 125 EKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAA 167 (648)
Q Consensus 125 ~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~ 167 (648)
++.++.|+..++..+.+-..++.+++..++.+..++.+|..-.
T Consensus 20 e~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4556677777777777777777788888888888888877543
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=32.72 E-value=11 Score=38.67 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=13.2
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||.++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4455699999999997
No 242
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=32.30 E-value=9.2 Score=39.58 Aligned_cols=19 Identities=53% Similarity=0.667 Sum_probs=14.7
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.|.+. .-.|+||||||.++
T Consensus 170 ~g~~v--~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNV--IVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCE--EEEESTTSCHHHHH
T ss_pred CCCEE--EEECCCCCCHHHHH
Confidence 56554 45699999999987
No 243
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=32.16 E-value=12 Score=41.96 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=16.2
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
.++.++..|..|||||+|+
T Consensus 14 ~~~~~lV~AgaGSGKT~~l 32 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVI 32 (673)
T ss_dssp CSSEEEECCCTTSCHHHHH
T ss_pred CCCCEEEEeCCCCChHHHH
Confidence 3567788899999999998
No 244
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=31.61 E-value=12 Score=42.28 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=15.6
Q ss_pred HHcCcceEEEeecccCCCCceee
Q 047843 260 VMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 260 vLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345544 677899999999664
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=31.42 E-value=11 Score=35.52 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=12.3
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
+.-.|++|||||.++
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999886
No 246
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=31.37 E-value=12 Score=36.80 Aligned_cols=16 Identities=44% Similarity=0.538 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|.+|||||..-
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4677899999999763
No 247
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=31.30 E-value=13 Score=33.40 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999875
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=31.23 E-value=13 Score=35.00 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=13.9
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
.-.|.-.|++|||||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345556799999999876
No 249
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=31.23 E-value=14 Score=32.83 Aligned_cols=16 Identities=19% Similarity=0.056 Sum_probs=13.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999875
No 250
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=30.86 E-value=16 Score=33.48 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=16.0
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344556888999999999874
No 251
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=30.75 E-value=17 Score=36.06 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.7
Q ss_pred eEEEeecccCCCCceeee
Q 047843 266 VCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi 283 (648)
..++-||+.|+|||..+.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 678889999999999873
No 252
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=30.31 E-value=11 Score=34.18 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.2
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4457899999999876
No 253
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.30 E-value=13 Score=40.70 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=28.2
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHHH-HHHc--C--cceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLIR-SVMD--G--YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV~-svLd--G--yN~~IfAYGQTGSGKTyTM 282 (648)
.-+||.|=|-+.--+++.+.+ -|+.. ..+. | .--.|+-||+.|+|||...
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 346666665433333333333 23221 2232 3 2357999999999999875
No 254
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=30.24 E-value=17 Score=42.33 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=19.0
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.+ ..++-.|+.|||||+|+
T Consensus 363 ~Av~~~l~~--~~~lI~GppGTGKT~ti 388 (800)
T 2wjy_A 363 YAVKTVLQR--PLSLIQGPPGTGKTVTS 388 (800)
T ss_dssp HHHHHHHTS--SEEEEECCTTSCHHHHH
T ss_pred HHHHHhccC--CeEEEEcCCCCCHHHHH
Confidence 345555553 34567899999999997
No 255
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=30.21 E-value=17 Score=40.70 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=18.3
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|..++.+ ..++-.|..|||||+|+
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHH
Confidence 45555543 45566899999999997
No 256
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=30.12 E-value=15 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999874
No 257
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=30.04 E-value=16 Score=42.54 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=18.6
Q ss_pred HHHHHHHcCcceEEEeecccCCCCceee
Q 047843 255 PLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 255 plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
..|..++.+ ..++-.|+.|||||+|+
T Consensus 367 ~Av~~~l~~--~~~lI~GppGTGKT~~i 392 (802)
T 2xzl_A 367 NAVSHVLQR--PLSLIQGPPGTGKTVTS 392 (802)
T ss_dssp HHHHHHTTC--SEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcC--CCEEEECCCCCCHHHHH
Confidence 345555542 34567899999999997
No 258
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.82 E-value=2.5e+02 Score=23.67 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047843 125 EKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALG 169 (648)
Q Consensus 125 ~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 169 (648)
+..++.|+..++..+.+-..++.+++..++.+..++.+|..-..+
T Consensus 26 e~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 26 EHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455667777777777777777778888888888888888764433
No 259
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=29.56 E-value=13 Score=41.92 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.3
Q ss_pred HHHHHcCcceEEEeecccCCCCceee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+..+++|.|+ +..|+||||||...
T Consensus 34 i~~i~~~~~~--lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 34 VEKVFSGKNL--LLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHHTTCSCE--EEECSSHHHHHHHH
T ss_pred HHHHhCCCcE--EEEcCCccHHHHHH
Confidence 3445566654 67789999999775
No 260
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=29.54 E-value=11 Score=35.44 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.4
Q ss_pred EEEeecccCCCCceeeeec
Q 047843 267 CIFAYGQTGSGKTHTMIRS 285 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~ 285 (648)
.++-||..|||||+.+++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4677999999999997543
No 261
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=29.53 E-value=1e+02 Score=26.74 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=9.0
Q ss_pred cccchhhhhhhhcc
Q 047843 99 VLGISQCCRACLMK 112 (648)
Q Consensus 99 ~~~~~~~~~~~~~~ 112 (648)
+-+-|+.||.+-.+
T Consensus 35 NRgyAq~CR~Kr~~ 48 (90)
T 2wt7_B 35 NRGYAQSCRYKRVQ 48 (90)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34567888876554
No 262
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=29.49 E-value=11 Score=35.76 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3556799999999987
No 263
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=29.38 E-value=15 Score=33.25 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=13.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999874
No 264
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=29.20 E-value=14 Score=33.63 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.4
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46788999999999874
No 265
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=29.01 E-value=18 Score=43.69 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=18.6
Q ss_pred HHHHHHcCcceEEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
.|..++.|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4566677866 47789999999966
No 266
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=29.01 E-value=15 Score=36.46 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=17.1
Q ss_pred HcCcceEEEeecccCCCCceee
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.. ..++-||+.|+|||..+
T Consensus 28 l~~--~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 28 LRA--PITLVLGLRRTGKSSII 47 (357)
T ss_dssp TCS--SEEEEEESTTSSHHHHH
T ss_pred hcC--CcEEEECCCCCCHHHHH
Confidence 554 58889999999999987
No 267
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=28.94 E-value=34 Score=34.85 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|...|.+|+|||+++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999987
No 268
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=28.92 E-value=22 Score=39.19 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=18.4
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
++..+..|. .|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 444455554 5677999999999886
No 269
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=28.64 E-value=19 Score=33.66 Aligned_cols=18 Identities=33% Similarity=0.565 Sum_probs=14.4
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
...|+-.|.+|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345667899999999775
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=28.63 E-value=15 Score=34.42 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=13.0
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999865
No 271
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=28.51 E-value=22 Score=42.97 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHHHHcCcceEEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
.+..++.|.| +++.++||||||..
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~ 109 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTF 109 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHH
Confidence 4666778876 46788999999984
No 272
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=28.49 E-value=24 Score=40.01 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=33.8
Q ss_pred EEEcceeeCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|..-.=|.|...|..-+.. ++..+-.|... ....|-|||||||||
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~ 49 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTV 49 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHH
Confidence 36666678899999887655 45666666532 345699999999998
No 273
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=28.48 E-value=22 Score=42.60 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=18.4
Q ss_pred HHHHHHcCcceEEEeecccCCCCcee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
.|..++.|.+ ++..++||||||..
T Consensus 94 ai~~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 94 AISCIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4555667766 67788999999976
No 274
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=28.35 E-value=12 Score=35.91 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.8
Q ss_pred EeecccCCCCceee
Q 047843 269 FAYGQTGSGKTHTM 282 (648)
Q Consensus 269 fAYGQTGSGKTyTM 282 (648)
.-.|++|||||..+
T Consensus 27 ~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 27 VICGPSGVGKGTLI 40 (218)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34699999999886
No 275
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=28.32 E-value=15 Score=32.81 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=13.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999874
No 276
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=28.19 E-value=19 Score=41.67 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=17.0
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.|..++.|.. .++..|+||||||..+
T Consensus 101 ~i~~~l~~~~-~vii~gpTGSGKTtll 126 (773)
T 2xau_A 101 EFLKLYQNNQ-IMVFVGETGSGKTTQI 126 (773)
T ss_dssp HHHHHHHHCS-EEEEECCTTSSHHHHH
T ss_pred HHHHHHhCCC-eEEEECCCCCCHHHHH
Confidence 3444454433 3567799999999943
No 277
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=27.86 E-value=16 Score=33.79 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.8
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999874
No 278
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=27.79 E-value=14 Score=38.07 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.6
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|.-.|++|||||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35677899999999997
No 279
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=27.52 E-value=3.4e+02 Score=24.81 Aligned_cols=64 Identities=9% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhHHHHHhHH
Q 047843 116 KHRQLLQMQEKELVDLKDLLSRTKKEFKDLELQLH---SDLEDLGNQVQEMSSAALGYHRVVNENRK 179 (648)
Q Consensus 116 ~~~~~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~---~~~~~~~~~~~e~~~~~~~~~~~~~err~ 179 (648)
+.++-.+..+.++.++...+..+|.++..++.++. ..+.++...+.+++.........+..+++
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~~~~ 138 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELNDSKK 138 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 280
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=27.22 E-value=18 Score=32.69 Aligned_cols=17 Identities=47% Similarity=0.636 Sum_probs=10.2
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999874
No 281
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=27.14 E-value=13 Score=43.32 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=31.0
Q ss_pred eEEEcceeeCCCCChhhHHhch-HHHHH-HHHcC----cceEEEeecccCCCCceee
Q 047843 232 KVFQFNHVFGPTATQDDVFKDT-QPLIR-SVMDG----YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 232 k~F~FD~VF~~~asQeeVf~~v-~plV~-svLdG----yN~~IfAYGQTGSGKTyTM 282 (648)
..+.||.|.+.+..-+.+.+.+ .|+-. .++.. -..+|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3577888887655545554443 22221 12221 2346888999999999775
No 282
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.12 E-value=3.1e+02 Score=26.68 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047843 121 LQMQEKELVDLKDLLSRTKKEFKDLELQLHSD 152 (648)
Q Consensus 121 ~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~ 152 (648)
++..++.+.+|+..+..++.+++..+..++..
T Consensus 51 L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 51 LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666666666555543
No 283
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=27.01 E-value=19 Score=35.49 Aligned_cols=21 Identities=24% Similarity=0.676 Sum_probs=17.4
Q ss_pred cCcceEEEeecccCCCCceee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTM 282 (648)
.|+...|.-.|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588999999999999999765
No 284
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=26.94 E-value=1e+02 Score=21.41 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 047843 466 EVMQLKEQIESLKKALANKEA 486 (648)
Q Consensus 466 ~i~~Lk~eI~~LK~~L~~~e~ 486 (648)
+|..|+.+|..||++++...-
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665543
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=26.81 E-value=18 Score=32.56 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+.+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999999875
No 286
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=26.71 E-value=16 Score=38.09 Aligned_cols=24 Identities=29% Similarity=0.650 Sum_probs=21.0
Q ss_pred HHHcCcceEEEeecccCCCCceee
Q 047843 259 SVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 259 svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 467899999999999999999665
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.65 E-value=17 Score=32.85 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999774
No 288
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=26.50 E-value=12 Score=35.91 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.4
Q ss_pred EEEeecccCCCCceeeeec
Q 047843 267 CIFAYGQTGSGKTHTMIRS 285 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~~ 285 (648)
-++-||..|||||..+++.
T Consensus 10 i~v~~G~mgsGKTT~ll~~ 28 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRR 28 (191)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5677999999999887543
No 289
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=26.42 E-value=18 Score=33.05 Aligned_cols=16 Identities=44% Similarity=0.634 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999874
No 290
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.34 E-value=27 Score=35.61 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=21.8
Q ss_pred hhhHHhchHHHHHHHHcCc-ceEEEeecccCCCCceee
Q 047843 246 QDDVFKDTQPLIRSVMDGY-NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 246 QeeVf~~v~plV~svLdGy-N~~IfAYGQTGSGKTyTM 282 (648)
|+++++. +...+-.|- .-.++-||+.|+|||.+.
T Consensus 7 ~~~~~~~---l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 7 LRPDFEK---LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GHHHHHH---HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred hHHHHHH---HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 4444443 333333443 346888999999999886
No 291
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=26.19 E-value=30 Score=41.98 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=17.3
Q ss_pred HcCcceEEEeecccCCCCceee
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTM 282 (648)
-.|...-++..|+||||||.+.
T Consensus 620 ~~g~p~d~ll~~~TGsGKT~va 641 (1151)
T 2eyq_A 620 CQPLAMDRLVCGDVGFGKTEVA 641 (1151)
T ss_dssp HSSSCCEEEEECCCCTTTHHHH
T ss_pred hcCCcCcEEEECCCCCCHHHHH
Confidence 3477557788999999999763
No 292
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=26.18 E-value=15 Score=36.28 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=15.5
Q ss_pred eEEEeecccCCCCceeeee
Q 047843 266 VCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTMi~ 284 (648)
..++-||.+|||||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4677899999999988754
No 293
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=26.13 E-value=15 Score=35.39 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.4
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
-.|+-.|..|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778899999999875
No 294
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.12 E-value=3.6e+02 Score=25.82 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=13.7
Q ss_pred hhhhhHHHHHhHHhhhhhhhc
Q 047843 167 ALGYHRVVNENRKLYNMVQDL 187 (648)
Q Consensus 167 ~~~~~~~~~err~l~N~l~el 187 (648)
...+.++..++++|+..|.++
T Consensus 110 k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 110 KHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788887766544
No 295
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=26.08 E-value=18 Score=32.98 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.9
Q ss_pred EEEeecccCCCCcee
Q 047843 267 CIFAYGQTGSGKTHT 281 (648)
Q Consensus 267 ~IfAYGQTGSGKTyT 281 (648)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377789999999986
No 296
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=25.87 E-value=4.7e+02 Score=25.48 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhcCCCeEEEEEeCC
Q 047843 120 LLQMQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRGNIRVYCRVRP 199 (648)
Q Consensus 120 ~~~~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~elkGnIRV~vRVRP 199 (648)
++.....|+..|...+.....|++.|+.+++..-++.. ...... .+..+.---....+.+|.| +|||-
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~----~~~~~~---~~~~e~i~i~~DL~e~LTG-----l~V~~ 88 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK----ELKTQT---SQQAENSEVIKDLYEYLCN-----VRVHK 88 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHS-----EECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhhhHH---HHHHHhhhHHHHHHHHccC-----cEEEE
Confidence 44444556667777777777777777766654333322 111110 0111111123345667788 78888
Q ss_pred CCcccCCceEEEE
Q 047843 200 SFRAETKNVIEFI 212 (648)
Q Consensus 200 ~~~~E~~~~i~~~ 212 (648)
+...+...+..++
T Consensus 89 ~~ed~~~~~FDc~ 101 (190)
T 4emc_A 89 SYEDDSGLWFDIS 101 (190)
T ss_dssp CCCCSSCEEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 8766665544443
No 297
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=25.57 E-value=16 Score=34.11 Aligned_cols=16 Identities=44% Similarity=0.347 Sum_probs=12.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445799999999875
No 298
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=25.55 E-value=29 Score=40.65 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=32.7
Q ss_pred EEEcceeeCCCCChhhHHhch-HHHHH-HHHcCcc----eEEEeecccCCCCceee
Q 047843 233 VFQFNHVFGPTATQDDVFKDT-QPLIR-SVMDGYN----VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 233 ~F~FD~VF~~~asQeeVf~~v-~plV~-svLdGyN----~~IfAYGQTGSGKTyTM 282 (648)
...||.|-|-+..-+++.+.+ -|+-. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 457888877665555554444 34332 3445543 47999999999999764
No 299
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=25.45 E-value=20 Score=31.89 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3677899999999764
No 300
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=25.41 E-value=18 Score=32.81 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.4
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
..-||++|||||..|
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 346899999999876
No 301
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=25.28 E-value=15 Score=35.31 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=14.4
Q ss_pred EEEeecccCCCCceeeee
Q 047843 267 CIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTMi~ 284 (648)
.++-+|..|||||+.++.
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 356789999999998643
No 302
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=25.20 E-value=19 Score=32.61 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+.-
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3667899999999864
No 303
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=25.15 E-value=20 Score=40.30 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=18.3
Q ss_pred HHHHHcCcceEEEeecccCCCCcee
Q 047843 257 IRSVMDGYNVCIFAYGQTGSGKTHT 281 (648)
Q Consensus 257 V~svLdGyN~~IfAYGQTGSGKTyT 281 (648)
+..++.|.++ +..++||||||..
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~ 202 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKR 202 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTT
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHH
Confidence 5566777765 6778999999998
No 304
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=25.06 E-value=19 Score=33.41 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.1
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999874
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=24.90 E-value=18 Score=32.56 Aligned_cols=16 Identities=38% Similarity=0.671 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999864
No 306
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=24.68 E-value=20 Score=32.60 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 11 ~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQC 26 (196)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999874
No 307
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=24.61 E-value=21 Score=31.75 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=19.5
Q ss_pred HHHHHc-CcceEEEeecccCCCCceeee
Q 047843 257 IRSVMD-GYNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 257 V~svLd-GyN~~IfAYGQTGSGKTyTMi 283 (648)
+..++. .....|.-.|.+|+|||..+-
T Consensus 9 ~~~~~~~~~~~~i~v~G~~~~GKssli~ 36 (183)
T 1moz_A 9 FDKLWGSNKELRILILGLDGAGKTTILY 36 (183)
T ss_dssp HGGGTTCSSCEEEEEEEETTSSHHHHHH
T ss_pred HHHhcCCCCccEEEEECCCCCCHHHHHH
Confidence 334444 456678889999999997763
No 308
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.58 E-value=3.7e+02 Score=24.11 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHhhhhhhhcCC
Q 047843 123 MQEKELVDLKDLLSRTKKEFKDLELQLHSDLEDLGNQVQEMSSAALGYHRVVNENRKLYNMVQDLRG 189 (648)
Q Consensus 123 ~q~~~l~~Lk~~~~~~~~e~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~err~l~N~l~elkG 189 (648)
.+..++..|..........+.+|++.+...-..+..++.+ ....|+++..+|..|.+
T Consensus 42 ~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~----------Lt~~Re~V~~eL~rLQ~ 98 (112)
T 1x79_B 42 DSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAV----------LMQSREQVSEELVRLQK 98 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555554444333333333333 23456666666655543
No 309
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=24.55 E-value=40 Score=36.37 Aligned_cols=16 Identities=50% Similarity=0.646 Sum_probs=14.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|.+|+|||+|.
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999997
No 310
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=24.55 E-value=16 Score=41.23 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.5
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.-++..|.||||||+.+
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 45678899999999886
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=24.48 E-value=18 Score=33.80 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|..|||||..+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999875
No 312
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.41 E-value=3.4e+02 Score=29.45 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=4.7
Q ss_pred HHhhhhhhhcCCC
Q 047843 178 RKLYNMVQDLRGN 190 (648)
Q Consensus 178 r~l~N~l~elkGn 190 (648)
.++-...+++.+|
T Consensus 572 ~~~~~l~~~~~~~ 584 (597)
T 3oja_B 572 QKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHTTC--
T ss_pred HHHHHHHHHhcCC
Confidence 3344444444444
No 313
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=24.40 E-value=19 Score=34.23 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999874
No 314
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=24.33 E-value=28 Score=39.94 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.++..|+||||||+.+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 4678899999999775
No 315
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=24.27 E-value=20 Score=33.17 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=13.6
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999874
No 316
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=24.21 E-value=24 Score=38.72 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=17.4
Q ss_pred HHHHHHcCcceEEEeecccCCCCceee
Q 047843 256 LIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 256 lV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
+.+.+..|.++ ++-.+||+|||.+.
T Consensus 15 v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 15 VIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHcCCcE--EEECCCCccHHHHH
Confidence 34455677654 55568999999875
No 317
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=24.17 E-value=18 Score=40.01 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.6
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..++-||++|+|||+++
T Consensus 109 ~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CEEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36778999999999886
No 318
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=23.92 E-value=37 Score=34.47 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=14.7
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
-...|.-.|.+|||||+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3445667799999999875
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=23.78 E-value=22 Score=34.96 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.4
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 36788999999999875
No 320
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=23.58 E-value=29 Score=39.00 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=22.7
Q ss_pred eCCCCChhhHHhchHHHHHHHHcCcceEEEeecccCCCCceee
Q 047843 240 FGPTATQDDVFKDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 240 F~~~asQeeVf~~v~plV~svLdGyN~~IfAYGQTGSGKTyTM 282 (648)
|.|-..|.++-+.+ .+.+.+|.+ +++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~v---~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFL---RSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHH---HHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHH---HHHHHcCCC--EEEECCCCCCHHHHH
Confidence 34444566555544 333445654 677889999999774
No 321
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=23.51 E-value=23 Score=34.96 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=17.5
Q ss_pred cCcceEEEeecccCCCCceeeee
Q 047843 262 DGYNVCIFAYGQTGSGKTHTMIR 284 (648)
Q Consensus 262 dGyN~~IfAYGQTGSGKTyTMi~ 284 (648)
+-+...|+-.|+||||||...+.
T Consensus 31 ~~~g~~ilI~GpsGsGKStLA~~ 53 (205)
T 2qmh_A 31 DIYGLGVLITGDSGVGKSETALE 53 (205)
T ss_dssp EETTEEEEEECCCTTTTHHHHHH
T ss_pred EECCEEEEEECCCCCCHHHHHHH
Confidence 44456688899999999977643
No 322
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=23.20 E-value=26 Score=36.54 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=14.1
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
-.|+-.|+||||||..-
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36788999999999764
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.09 E-value=21 Score=33.60 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQA 21 (220)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999764
No 324
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=22.97 E-value=21 Score=40.80 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.2
Q ss_pred ceEEEeecccCCCCceee
Q 047843 265 NVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 265 N~~IfAYGQTGSGKTyTM 282 (648)
++.++-.|..|||||+|+
T Consensus 24 ~g~~lV~AgAGSGKT~vL 41 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVL 41 (724)
T ss_dssp SSCEEEEECTTSCHHHHH
T ss_pred CCCEEEEEcCCCCHHHHH
Confidence 456677789999999998
No 325
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.71 E-value=22 Score=33.19 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999874
No 326
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=22.41 E-value=23 Score=39.80 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=15.2
Q ss_pred HcCcceEEEeecccCCCCceee
Q 047843 261 MDGYNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 261 LdGyN~~IfAYGQTGSGKTyTM 282 (648)
.+|. .++..|+||||||...
T Consensus 44 ~~~~--~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 44 LEGN--RLLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTC--CEEEECCTTSCHHHHH
T ss_pred cCCC--cEEEEcCCCCcHHHHH
Confidence 4454 4567899999999875
No 327
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=22.41 E-value=20 Score=35.07 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=12.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
++.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3456799999999775
No 328
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=22.37 E-value=27 Score=31.92 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.1
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 14 ~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 45677899999999875
No 329
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=22.33 E-value=18 Score=31.05 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=13.5
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|...|.+|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999775
No 330
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=22.30 E-value=20 Score=33.05 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
++.-.|+.|||||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5556799999999886
No 331
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=22.17 E-value=20 Score=43.05 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=12.2
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
.+...+||||||+||
T Consensus 303 gli~~~TGSGKT~t~ 317 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTS 317 (1038)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 345568999999998
No 332
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=21.86 E-value=25 Score=32.52 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=15.3
Q ss_pred cceEEEeecccCCCCceee
Q 047843 264 YNVCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTM 282 (648)
....|+-.|..|||||+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3446888999999999874
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=21.83 E-value=24 Score=32.15 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.7
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|..|||||+..
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 566899999999875
No 334
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=21.83 E-value=20 Score=39.88 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=13.8
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
.-++-.|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34567899999999875
No 335
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=21.75 E-value=21 Score=36.83 Aligned_cols=16 Identities=31% Similarity=0.609 Sum_probs=13.2
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
+|.-.|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999997
No 336
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.69 E-value=24 Score=33.82 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.2
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-.|..|||||+..
T Consensus 17 ~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999874
No 337
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=21.51 E-value=27 Score=36.79 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=13.9
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|+||||||..-
T Consensus 42 lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6788999999999764
No 338
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=21.50 E-value=25 Score=31.80 Aligned_cols=15 Identities=47% Similarity=0.479 Sum_probs=12.4
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|.-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999763
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.43 E-value=20 Score=32.33 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.3
Q ss_pred cceEEEeecccCCCCceeee
Q 047843 264 YNVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 264 yN~~IfAYGQTGSGKTyTMi 283 (648)
....|+-.|.+|+|||..+-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44578899999999997763
No 340
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=21.40 E-value=39 Score=34.01 Aligned_cols=29 Identities=34% Similarity=0.376 Sum_probs=20.8
Q ss_pred HHHHHHHc-Cc--ceEEEeecccCCCCceeee
Q 047843 255 PLIRSVMD-GY--NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 255 plV~svLd-Gy--N~~IfAYGQTGSGKTyTMi 283 (648)
+-++.++. |+ ...+.-||.+|||||..+.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 34666774 33 3567889999999998763
No 341
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=21.38 E-value=24 Score=32.65 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|..|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3667899999999874
No 342
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=21.33 E-value=22 Score=34.48 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.0
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999887
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.19 E-value=25 Score=32.92 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=12.5
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-.|..|||||+..
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999874
No 344
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=21.15 E-value=25 Score=32.65 Aligned_cols=16 Identities=38% Similarity=0.380 Sum_probs=13.1
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|.-.|..|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999875
No 345
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=20.85 E-value=27 Score=36.51 Aligned_cols=16 Identities=50% Similarity=0.650 Sum_probs=13.4
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|+||||||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5677899999999764
No 346
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=20.78 E-value=1.3e+02 Score=34.99 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=47.5
Q ss_pred EEEeecccCCCCceee---eecc--cCCCCccc------------------CCCcEEEecCHHHHHHHHHhhhhhhcccc
Q 047843 267 CIFAYGQTGSGKTHTM---IRSC--ASENGLNL------------------PDATMHSVKSTADVLQLMKLGELNRAVSS 323 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM---i~~~--~~~~g~~V------------------~~lt~~~V~S~eevl~lL~~G~~nR~~~s 323 (648)
.|...|.+++|||..+ ++.. ....|+.- .......+.+.+++...+....... .+.
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~-~g~ 131 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV-TGT 131 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH-HCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh-cCC
Confidence 6788899999999876 2211 11111110 0111123457788877776543221 111
Q ss_pred cccccCCCCceEEEEEEEEEeeCCCCeeeeeeEEEEcCCCccc
Q 047843 324 TAINNRSSRSHSVLTIHVHGKDTSGSILRSCLHLVDLAGSERV 366 (648)
Q Consensus 324 T~~N~~SSRSH~IftI~V~~~~~~~~~~~SkL~LVDLAGSER~ 366 (648)
| ..-|.-.+.+.|...+. ..|.||||+|--..
T Consensus 132 ---~--~~is~~~i~l~I~~P~~------~qL~LVDTPGi~~~ 163 (772)
T 3zvr_A 132 ---N--KGISPVPINLRVYSPHV------LNLTLVDLPGMTKV 163 (772)
T ss_dssp ---T--TCCCSCCEEEEEEETTC------CSEEEEECCCCCCC
T ss_pred ---C--CcccccceEEEEecCCC------CceEEEECCCcccC
Confidence 1 12234455666654432 25899999998664
No 347
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=20.62 E-value=27 Score=33.43 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=12.6
Q ss_pred EEeecccCCCCceee
Q 047843 268 IFAYGQTGSGKTHTM 282 (648)
Q Consensus 268 IfAYGQTGSGKTyTM 282 (648)
|+-+|.+|||||.--
T Consensus 2 ilV~Gg~~SGKS~~A 16 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA 16 (180)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 688999999999553
No 348
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=20.36 E-value=26 Score=32.08 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.7
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+..
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999874
No 349
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=20.32 E-value=27 Score=31.29 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.3
Q ss_pred EEEeecccCCCCceee
Q 047843 267 CIFAYGQTGSGKTHTM 282 (648)
Q Consensus 267 ~IfAYGQTGSGKTyTM 282 (648)
.|+-.|..|||||+.-
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677899999999863
No 350
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.28 E-value=47 Score=34.18 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHHc-Cc--ceEEEeecccCCCCceeee
Q 047843 255 PLIRSVMD-GY--NVCIFAYGQTGSGKTHTMI 283 (648)
Q Consensus 255 plV~svLd-Gy--N~~IfAYGQTGSGKTyTMi 283 (648)
+-++.++. |+ ...+.-||.+|||||..+.
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 45788886 44 3457789999999998863
No 351
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=20.23 E-value=26 Score=38.18 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=14.7
Q ss_pred eEEEeecccCCCCceee
Q 047843 266 VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 266 ~~IfAYGQTGSGKTyTM 282 (648)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45889999999999875
No 352
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=20.03 E-value=28 Score=34.50 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHcCcc--eEEEeecccCCCCceee
Q 047843 257 IRSVMDGYN--VCIFAYGQTGSGKTHTM 282 (648)
Q Consensus 257 V~svLdGyN--~~IfAYGQTGSGKTyTM 282 (648)
++.+.-|+. -.+.-.|.+|+|||..+
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHH
Confidence 555554443 35667899999999886
Done!