BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047844
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 68/132 (51%), Gaps = 25/132 (18%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA+ G PLH+AA +GH +VE L +++G + A+ LG+
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVL-----------LKNGADVNAKDSLGV------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A + G L++V++LL GAD +++ G TPL+LAA R H EI +L+
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 139 VNAQDKFGKTAF 150
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 51/110 (46%), Gaps = 15/110 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + AR G T LH A G L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGW------TPLHLAAHFGHLEIVEVLLKNGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
D S G TPL+LAA R H EI +L+ +G T LH
Sbjct: 72 DVNAKDSL---GVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLH 118
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 26/128 (20%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNAK G PLH+AAR GH +VE L +++G + A
Sbjct: 62 IVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL-----------LKNGADVNASD 110
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEI 177
G T LH A + G L++V++LL GAD + + G+T ++ ++++
Sbjct: 111 SHGF------TPLHLAAKRGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDL 161
Query: 178 SAEILQKC 185
AEILQK
Sbjct: 162 -AEILQKL 168
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
++ G PLH+AA GH VV+ L+ G + A+ G T LH
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLS-----------QGADPNAKDSDGK------TPLHL 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A ++G +VVK+LL GADP + + G+TPL+LAA HKE+ +L + P
Sbjct: 77 AAENGHKEVVKLLLSQGADP---NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133
Query: 193 PNGKTAL 199
+G+T L
Sbjct: 134 SDGRTPL 140
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 97 LIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAF 154
LIE A+ + ++ +E+ A + + + T LH A ++G +VVK+LL GADP
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD--VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP-- 63
Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
+ + G+TPL+LAA HKE+ +L + P + +GKT LH
Sbjct: 64 -NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 108
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 22/125 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AAR GH VV+ L+E +G + A K+ T LH A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE-----------AGADVNA------KDKNGRTPLHLAAR 44
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
+G L+VVK+LL GAD + + +G TPL+LAA H E+ +L+ + NG
Sbjct: 45 NGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 196 KTALH 200
+T LH
Sbjct: 102 RTPLH 106
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 25/116 (21%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PLH+AAR GH VV+ L+E +G + A K+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE-----------AGADVNA------KDKNGR 69
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
T LH A ++G L+VVK+LL GAD + + +G TPL+LAA H E+ +L+
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 20/81 (24%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PLH+AAR GH VV+ L+E +G + A K+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE-----------AGADVNA------KDKNGR 102
Query: 130 TALHEAVQSGSLDVVKILLGA 150
T LH A ++G L+VVK+LL A
Sbjct: 103 TPLHLAARNGHLEVVKLLLEA 123
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
+G TPL+LAA H E+ +L+ + NG+T LH
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 40
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 73/173 (42%), Gaps = 23/173 (13%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G +PLHVAA +G A ++ L++ G + AR N ++ LH A Q
Sbjct: 86 GSSPLHVAALHGRADLIPLLLK-----------HGANAGAR------NADQAVPLHLACQ 128
Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKT 197
G VVK LL ++ A P + SG TPL A + H E+ A +LQ S G T
Sbjct: 129 QGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 198 ALHXXXXXXXXXXXXXHKLHRSSRFLPSPR-----SCLIPNSTTTSLFALIPS 245
ALH LH +S + + R C NS L ++PS
Sbjct: 188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 240
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 16/90 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVE-----STARHML-------- 121
NA PLH+A + GH VV+ L++ + + +++ S H L
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 122 ---GMKNDEEDTALHEAVQSGSLDVVKILL 148
N++ +TALHEAV + VV++LL
Sbjct: 176 ASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
++ G PLH AA GH +V+ L+ G + A+ G T LH
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLS-----------KGADPNAKDSDGR------TPLHY 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A ++G ++VK+LL GADP + + G TPL+ AA HKEI +L K P
Sbjct: 77 AAENGHKEIVKLLLSKGADP---NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Query: 193 PNGKTAL 199
+G+T L
Sbjct: 134 SDGRTPL 140
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 93 VVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
++EA K +E+G + A G T LH A ++G ++VK+LL GA
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGR------TPLHYAAENGHKEIVKLLLSKGA 61
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
DP + + G TPL+ AA HKEI +L K P + +G+T LH
Sbjct: 62 DP---NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 108
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 18/124 (14%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
KG PLHVAA+YG V E L+E + ++G+ T LH AV
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGL----------------TPLHVAV 187
Query: 137 QSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGK 196
+LD+VK+LL P+S +G TPL++AA + E++ +LQ S E G
Sbjct: 188 HHNNLDIVKLLL-PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246
Query: 197 TALH 200
T LH
Sbjct: 247 TPLH 250
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
N K + PLH+AAR GH V + L++ + + K ++ T LH
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQ-----------------NKAKVNAKAKDDQTPLHC 86
Query: 135 AVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN 194
A + G ++VK+LL + A P A +G TPL++AA H E +L+K S A
Sbjct: 87 AARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK 145
Query: 195 GKTALH 200
G T LH
Sbjct: 146 GFTPLH 151
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 29/145 (20%)
Query: 77 KGDAPLHVAARYGHAAVVEAL-----------------IEIAKQE-----SDQEIESGVE 114
+G PLH+AA+ GHA +V L + + QE +D I+ GV
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 115 STARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAH 174
A +G T LH A G++ +VK LL A + G +PL+ AA + H
Sbjct: 304 VDATTRMGY------TPLHVASHYGNIKLVKFLL-QHQADVNAKTKLGYSPLHQAAQQGH 356
Query: 175 KEISAEILQKCPSPAHEGPNGKTAL 199
+I +L+ SP +G T L
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPL 381
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
T LH A G L +VK LL A P +N ETPL++AA H E++ +LQ
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRG-ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 190 HEGPNGKTALH 200
+ + +T LH
Sbjct: 75 AKAKDDQTPLH 85
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 22/124 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AA +GH +VE L +++G + A LG T LH A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVL-----------LKNGADVNAYDTLG------STPLHLAAH 89
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
G L++V++LL GAD + + +G TPL+LAA R H EI +L+ + G
Sbjct: 90 FGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFG 146
Query: 196 KTAL 199
KTA
Sbjct: 147 KTAF 150
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A ++G T LH A G L++V++LL GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGW------TPLHLAAYWGHLEIVEVLLKNGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
D Y GS TPL+LAA H EI +L+ + NG T LH
Sbjct: 72 D-VNAYDTLGS--TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLH 118
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 26/128 (20%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNA G PLH+AA +GH +VE L +++G + A
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL-----------LKNGADVNA-- 108
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEI 177
K+D T LH A G L++V++LL GAD + + G+T ++ ++++
Sbjct: 109 ----KDDNGITPLHLAANRGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISINNGNEDL 161
Query: 178 SAEILQKC 185
AEILQK
Sbjct: 162 -AEILQKL 168
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 25/132 (18%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA+ GD PLH+AAR GH +VE L +++G + A G
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVL-----------LKNGADVNALDFSGS------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A + G L++V++LL GAD + + G TPL+LAA H EI +L+
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 139 VNAQDKFGKTAF 150
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A G DT LH A + G L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYG------DTPLHLAARVGHLEIVEVLLKNGA 71
Query: 151 D-PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
D A +S G TPL+LAA R H EI +L+ + G T LH
Sbjct: 72 DVNALDFS----GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLH 118
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PLH+AAR GH +VE L +++G + A+ G
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 81
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
T LH A + G L++V++LL A A + + G TPL+LAA H EI +L+
Sbjct: 82 TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 190 HEGPNGKTAL 199
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP 152
L+E A+ D E+ +G + A+ G T LH A + G L++V++LL A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGY------TPLHLAAREGHLEIVEVLLKA-G 70
Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
A + + G TPL+LAA H EI +L+ + +G T LH
Sbjct: 71 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 118
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNAK G PLH+AAR GH +VE L +++G + A+
Sbjct: 95 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAQD 143
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G TA ++ +G+ D+ +IL
Sbjct: 144 KFGK------TAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 73 QVNA---KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA +G PLH+AA GH +VE L ++ G + AR G
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVL-----------LKHGADVNARDTDGW------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A +G L++V++LL GAD + + G TPL+LAA R H EI +L+
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 139 VNAQDKFGKTAF 150
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 97 LIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAF 154
L+E A+ D E+ + + A + +D+ T LH A G ++V++LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-- 73
Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
+ + G TPL+LAA H EI +L+ + G T LH
Sbjct: 74 -NARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLH 118
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNA+ G PLH+AA GH +VE L ++ G + A+
Sbjct: 95 IVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVL-----------LKHGADVNAQD 143
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G TA ++ +G+ D+ +IL
Sbjct: 144 KFGK------TAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
+A G PLH+AA YGH +VE L ++ G + A ++G T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVL-----------LKHGADVNAIDIMG------STPLHL 86
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A G L++V++LL GAD + + G+TPL+LAA H EI +L+ +
Sbjct: 87 AALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 193 PNGKTAL 199
GKTA
Sbjct: 144 KFGKTAF 150
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 23/114 (20%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
++ G PLH+AA GH +VE L ++ G + A G DT LH
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVL-----------LKHGADVNAVDTWG------DTPLH 118
Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 119 LAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 168
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + SG TPL+LAA H EI +L+
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 192 GPNGKTALH 200
G T LH
Sbjct: 77 DIMGSTPLH 85
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 22/108 (20%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AAR GH VV+ L +E+G + A K+ T LH A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLL-----------LEAGADVNA------KDKNGRTPLHLAAR 44
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
+G L+VVK+LL GAD + + +G TPL+LAA H E+ +L+
Sbjct: 45 NGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A ++G L+VVK+LL GAD + + +G TPL+LAA H E+ +L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 188 PAHEGPNGKTALH 200
+ NG+T LH
Sbjct: 61 VNAKDKNGRTPLH 73
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 20/81 (24%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PLH+AAR GH VV+ L+E +G + A K+
Sbjct: 27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLE-----------AGADVNA------KDKNGR 69
Query: 130 TALHEAVQSGSLDVVKILLGA 150
T LH A ++G L+VVK+LL A
Sbjct: 70 TPLHLAARNGHLEVVKLLLEA 90
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 161 SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
+G TPL+LAA H E+ +L+ + NG+T LH
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 40
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 62/125 (49%), Gaps = 24/125 (19%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AA +GH +VE L +++G + A LG+ T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVL-----------LKNGADVNADDSLGV------TPLHLAAD 89
Query: 138 SGSLDVVKILL--GADPAFPYSANG-SGETPLYLAAARAHKEISAEILQKCPSPAHEGPN 194
G L+VV++LL GAD +AN +G TPL+LAA H EI +L+ +
Sbjct: 90 RGHLEVVEVLLKNGAD----VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF 145
Query: 195 GKTAL 199
GKTA
Sbjct: 146 GKTAF 150
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A +G T LH A G L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGW------TPLHLAAYFGHLEIVEVLLKNGA 71
Query: 151 DPAFPYSANGS-GETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
D +A+ S G TPL+LAA R H E+ +L+ NG T LH
Sbjct: 72 D----VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLH 118
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
+A G PLH+AA YGH +VE L ++ G + A + G T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVL-----------LKHGADVNAIDIXG------STPLHL 86
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A G L++V++LL GAD + + G+TPL+LAA H EI +L+ +
Sbjct: 87 AALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQD 143
Query: 193 PNGKTAL 199
GKTA
Sbjct: 144 KFGKTAF 150
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 23/114 (20%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
++ G PLH+AA GH +VE L ++ G + A G DT LH
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVL-----------LKHGADVNAVDTWG------DTPLH 118
Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 119 LAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 168
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + SG TPL+LAA H EI +L+
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 192 GPNGKTALH 200
G T LH
Sbjct: 77 DIXGSTPLH 85
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PLH+AAR GH +VE L +++G + A+ G
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 69
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
T LH A + G L++V++LL A A + + G TPL+LAA H EI +L+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 190 HEGPNGKT 197
+ GKT
Sbjct: 129 AQDKFGKT 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP 152
L+E A+ D E+ +G + A+ G T LH A + G L++V++LL A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGY------TPLHLAAREGHLEIVEVLLKA-G 58
Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
A + + G TPL+LAA H EI +L+ + +G T LH
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNAK G PLH+AAR GH +VE L +++G + A+
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAQD 131
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G T A+ +G+ D+ ++L
Sbjct: 132 KFGK------TPFDLAIDNGNEDIAEVL 153
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 21/128 (16%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PLH+AAR GH +VE L +++G + A+ G
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAKDKDGY------ 69
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
T LH A + G L++V++LL A A + + G TPL+LAA H EI +L+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKA-GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 190 HEGPNGKT 197
+ GKT
Sbjct: 129 AQDKFGKT 136
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP 152
L+E A+ D E+ +G + A+ G T LH A + G L++V++LL A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGY------TPLHLAAREGHLEIVEVLLKA-G 58
Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
A + + G TPL+LAA H EI +L+ + +G T LH
Sbjct: 59 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 106
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNAK G PLH+AAR GH +VE L +++G + A+
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAQD 131
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G T A++ G D+ ++L
Sbjct: 132 KFGK------TPFDLAIREGHEDIAEVL 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 73 QVNA---KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA G PLH+AA GH +VE L +++G + A + G+
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVL-----------LKNGADVNASDLTGI------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A +G L++V++LL GAD + + G TPL+LAA H EI +L+
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 139 VNAQDKFGKTAF 150
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + G TPL+LAA+ H EI +L+
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 192 GPNGKTALH 200
G T LH
Sbjct: 77 DLTGITPLH 85
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 62 RIIEMCPSLLLQVNA---KGDAPLHVAARYGHAAVVEALI----------EIAKQESDQE 108
I+E+ VNA G PLH+AA+YGH +VE L+ + K D
Sbjct: 94 EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Query: 109 IESGVESTAR 118
I++G E A
Sbjct: 154 IDNGNEDLAE 163
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 61/129 (47%), Gaps = 24/129 (18%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
V+ G PLH+AA GH +VE L ++ G + A + G T LH
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVL-----------LKHGADVDAADVYGF------TPLH 85
Query: 134 EAVQSGSLDVVKILL--GAD-PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
A +G L++V++LL GAD AF +G TPL+LAA H EI +L+
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDM----TGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 191 EGPNGKTAL 199
+ GKTA
Sbjct: 142 QDKFGKTAF 150
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + +G TPL+LAA H EI +L+
Sbjct: 18 LLEAARAGQDDEVRILI-ANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 192 GPNGKTALH 200
G T LH
Sbjct: 77 DVYGFTPLH 85
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 13/70 (18%)
Query: 62 RIIEMCPSLLLQVNA---KGDAPLHVAARYGHAAVVEALI----------EIAKQESDQE 108
I+E+ VNA G PLH+AA GH +VE L+ + K D
Sbjct: 94 EIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Query: 109 IESGVESTAR 118
I++G E A+
Sbjct: 154 IDNGNEDLAK 163
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
++ G PLH AA+ GH +V+ LI G + A+ G T LH
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLIS-----------KGADVNAKDSDGR------TPLHY 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A + G ++VK+L+ GAD S G TPL+ AA HKEI ++ K
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDS---DGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133
Query: 193 PNGKTAL 199
+G+T L
Sbjct: 134 SDGRTPL 140
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 97 LIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAF 154
LIE A+ + ++ +E+ A + + + T LH A + G ++VK+L+ GAD
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNA 65
Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
S G TPL+ AA HKEI ++ K + +G+T LH
Sbjct: 66 KDS---DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLH 108
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 25/132 (18%)
Query: 73 QVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA+ D+ PLH+AA GH +VE L ++ G + A +G D
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVL-----------LKHGADVNAADKMG------D 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A G L++V++LL GAD + + G TPL+LAA H EI +L+
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 139 VNAQDKFGKTAF 150
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 26/129 (20%)
Query: 62 RIIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
I+E+ VNA GD PLH+AA YGH +VE L +++G + A
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL-----------LKNGADVNAT 109
Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKE 176
G T LH A +G L++V++LL GAD + + G+T ++ +++
Sbjct: 110 DTYGF------TPLHLAADAGHLEIVEVLLKYGAD---VNAQDKFGKTAFDISIDNGNED 160
Query: 177 ISAEILQKC 185
+ AEILQK
Sbjct: 161 L-AEILQKL 168
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 97 LIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAF 154
L+E A+ D E+ + + A + ++D T LH A G L++V++LL GAD
Sbjct: 18 LLEAARAGQDDEVRILMANGAD--VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-- 73
Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
+A+ G+TPL+LAA H EI +L+ G T LH
Sbjct: 74 -NAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLH 118
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVE-----STARHM--------- 120
+A+G LH+AA+ GH VV+ L+ + + + + + G + +H+
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 121 ---LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAA 170
+ ++++EE+ LH A SG +D+ +ILL A ++ N G++PL++AA
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAA 185
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 16/121 (13%)
Query: 80 APLHVAARYGHAAVVEALIE----IAKQESDQEIESGVESTARHMLGMK----------- 124
+PLH AA GH + L++ I DQ + H+ +K
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 125 -NDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
+ E T LH A + G +VV+ LL + G TP+ A H ++ +L
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 184 K 184
K
Sbjct: 133 K 133
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 57/124 (45%), Gaps = 22/124 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AA GH +VE L + +G + A G T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVL-----------LRNGADVNAVDTNGT------TPLHLAAS 77
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
G L++V++LL GAD + + +G TPLYLAA H EI +L+ + G
Sbjct: 78 LGHLEIVEVLLKYGADVN---AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFG 134
Query: 196 KTAL 199
KTA
Sbjct: 135 KTAF 138
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + G TPL++AAA H EI +L+
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 192 GPNGKTALH 200
NG T LH
Sbjct: 65 DTNGTTPLH 73
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 23/112 (20%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
V+ G PLH+AA GH +VE L ++ G + A+ G+ T L+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVL-----------LKYGADVNAKDATGI------TPLY 106
Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
A G L++V++LL GAD + + G+T ++ ++++ AEILQ
Sbjct: 107 LAAYWGHLEIVEVLLKHGADVN---AQDKFGKTAFDISIDIGNEDL-AEILQ 154
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 24/125 (19%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AA+ GH +VE L++ G + A G T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKY-----------GADVNAWDNYGA------TPLHLAAD 89
Query: 138 SGSLDVVKILL--GAD-PAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPN 194
+G L++V++LL GAD A Y G TPL+LAA H EI +L+ +
Sbjct: 90 NGHLEIVEVLLKHGADVNAKDY----EGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF 145
Query: 195 GKTAL 199
GKTA
Sbjct: 146 GKTAF 150
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A LG T LH A ++G L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGH------TPLHLAAKTGHLEIVEVLLKYGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
D + + G TPL+LAA H EI +L+ + G T LH
Sbjct: 72 DVN---AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLH 118
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 20/89 (22%)
Query: 62 RIIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
I+E+ VNAK G PLH+AA GH +VE L++ G + A+
Sbjct: 94 EIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKY-----------GADVNAQ 142
Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G TA ++ +G+ D+ +IL
Sbjct: 143 DKFGK------TAFDISIDNGNEDLAEIL 165
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
++ G PLH AA GH VV+ LI G + A+ G T LH
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLIS-----------KGADVNAKDSDGR------TPLHH 76
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A ++G +VVK+L+ GAD S G TPL+ AA HKE+ ++ K
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDS---DGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 193 PNGKTAL 199
+G+T L
Sbjct: 134 SDGRTPL 140
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 97 LIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAF 154
LIE A+ + ++ +E+ A + + + T LH A ++G +VVK+L+ GAD
Sbjct: 8 LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA 65
Query: 155 PYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
S G TPL+ AA HKE+ ++ K + +G+T LH
Sbjct: 66 KDS---DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 108
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 22/124 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AA GH +VE L ++ G + A + G T LH A
Sbjct: 47 GTTPLHLAAYSGHLEIVEVL-----------LKHGADVDASDVFGY------TPLHLAAY 89
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNG 195
G L++V++LL GAD + + G TPL+LAA + EI +L+ + G
Sbjct: 90 WGHLEIVEVLLKNGADVN---AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFG 146
Query: 196 KTAL 199
KTA
Sbjct: 147 KTAF 150
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AA +GH +VE L +++G + A GM T LH A +
Sbjct: 80 GYTPLHLAAYWGHLEIVEVL-----------LKNGADVNAMDSDGM------TPLHLAAK 122
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 123 WGYLEIVEVLLKHGADVN---AQDKFGKTAFDISIDNGNEDL-AEILQKL 168
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A G T LH A SG L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGT------TPLHLAAYSGHLEIVEVLLKHGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
D +++ G TPL+LAA H EI +L+ +G T LH
Sbjct: 72 DVD---ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLH 118
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALI----------EIAKQESDQEIESGVESTAR 118
+++ G PLH+AA++G+ +VE L+ + K D I++G E A
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 24/128 (18%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
+A G PLH+AA GH +VE L +++G + A GM T L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVL-----------LKNGADVNAVDHAGM------TPLRL 86
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANG-SGETPLYLAAARAHKEISAEILQKCPSPAHE 191
A G L++V++LL GAD +AN G TPL+LAA H EI +L+ +
Sbjct: 87 AALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 192 GPNGKTAL 199
GKTA
Sbjct: 143 DKFGKTAF 150
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
V+ G PL +AA +GH +VE L +++G + A M E T LH
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVL-----------LKNGADVNANDM------EGHTPLH 118
Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 119 LAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 168
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A G T LH A +G L++V++LL GA
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGW------TPLHLAAFNGHLEIVEVLLKNGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
D + + +G TPL LAA H EI +L+ G T LH
Sbjct: 72 DV---NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH 118
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNA---KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNA +G PLH+AA +GH +VE L +++G + A+
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL-----------LKNGADVNAQD 143
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G TA ++ +G+ D+ +IL
Sbjct: 144 KFG------KTAFDISIDNGNEDLAEIL 165
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 46 YTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQES 105
+TQ +EG +V+ + ++ + L Q + G +PLH A R G +AVVE LI +
Sbjct: 10 FTQCREGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 64
Query: 106 DQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETP 165
+ + N +DT LH A G D+V+ LL A + N G P
Sbjct: 65 ---------------INVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVP 108
Query: 166 LYLAAARAHKEISAEIL 182
L+ A +++ +++
Sbjct: 109 LHYACFWGQDQVAEDLV 125
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
L +D + LH A + G VV++L+ G +TPL+LAA+ H++I +
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQK 90
Query: 181 ILQ 183
+LQ
Sbjct: 91 LLQ 93
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 50 KEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI 109
+EG S VE +I M + + +N D PLH+AA +GH +V+ L++
Sbjct: 48 REGRSA---VVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD------ 97
Query: 110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA 169
+ N+ + LH A G V + L+ A+ A N GE P+ A
Sbjct: 98 -----------INAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKA 145
Query: 170 AA 171
A
Sbjct: 146 KA 147
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 46 YTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQES 105
+TQ +EG +V+ + ++ + L Q + G +PLH A R G +AVVE LI +
Sbjct: 5 FTQCREGNAVAVRL---WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-- 59
Query: 106 DQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETP 165
+ + N +DT LH A G D+V+ LL A + N G P
Sbjct: 60 ---------------INVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVP 103
Query: 166 LYLAAARAHKEISAEIL 182
L+ A +++ +++
Sbjct: 104 LHYACFWGQDQVAEDLV 120
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
L +D + LH A + G VV++L+ G +TPL+LAA+ H++I +
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHGHRDIVQK 85
Query: 181 ILQ 183
+LQ
Sbjct: 86 LLQ 88
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 50 KEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI 109
+EG S VE +I M + + +N D PLH+AA +GH +V+ L++
Sbjct: 43 REGRSA---VVEMLI-MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD------ 92
Query: 110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA 169
+ N+ + LH A G V + L+ A+ A N GE P+ A
Sbjct: 93 -----------INAVNEHGNVPLHYACFWGQDQVAEDLV-ANGALVSICNKYGEMPVDKA 140
Query: 170 AA 171
A
Sbjct: 141 KA 142
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP 152
L+E A+ D E+ +G + A G+ T LH V +G L+++++LL
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGI------TPLHLVVNNGHLEIIEVLLKY-A 70
Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
A +++ SG TPL+LAA R H EI +L+ G T LH
Sbjct: 71 ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLH 118
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 27/133 (20%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA G PLH+ GH ++E L++ A + + +SG
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD-KSGW---------------- 81
Query: 130 TALHEAVQSGSLDVVKILL--GAD-PAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
T LH A G L++V++LL GAD A Y G TPL+LAA H EI +L+
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDY----QGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 187 SPAHEGPNGKTAL 199
+ GKTA
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 26/128 (20%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
IIE+ VNA G PLH+AA GH +VE L++ G + A
Sbjct: 62 IIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY-----------GADVNAMD 110
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEI 177
G T LH A + G L++V++LL GAD + + G+T ++ ++++
Sbjct: 111 YQGY------TPLHLAAEDGHLEIVEVLLKYGADVN---AQDKFGKTAFDISIDNGNEDL 161
Query: 178 SAEILQKC 185
AEILQK
Sbjct: 162 -AEILQKL 168
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G+ PLH AA+ GHA V+ L + G + AR G +T LH A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL-----------LSKGADVNARSKDG------NTPLHLAAK 51
Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
+G ++VK+LL A A + + G TP +LA H EI
Sbjct: 52 NGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKNGHHEI 90
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKE 176
HM G K + +T LH A ++G + VK LL GAD + + G TPL+LAA H E
Sbjct: 2 HMWGSK--DGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAE 56
Query: 177 ISAEILQKCPSPAHEGPNGKTALH 200
I +L K +G T H
Sbjct: 57 IVKLLLAKGADVNARSKDGNTPEH 80
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 22/84 (26%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA+ G+ PLH+AA+ GHA +V+ L + G + AR G +
Sbjct: 34 DVNARSKDGNTPLHLAAKNGHAEIVKLL-----------LAKGADVNARSKDG------N 76
Query: 130 TALHEAVQSGSLDVVKIL--LGAD 151
T H A ++G ++VK+L GAD
Sbjct: 77 TPEHLAKKNGHHEIVKLLDAKGAD 100
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 69 SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE 128
SL + + LH A GH +VE L+++ +D K+D
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----------------KDDAG 73
Query: 129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
+ LH A +G ++VK LLG A + N +G TPL+ AA++ EI+ +L+ +P
Sbjct: 74 WSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Query: 189 AHEGPNGKTALH 200
+ TA+H
Sbjct: 133 DAKDHYEATAMH 144
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 43/185 (23%)
Query: 9 AAKGEIEPFNQ-LAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC 67
A G++E + + D+ L + T LH A +T+ I+E
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTE--------------IVEFL 59
Query: 68 PSLLLQVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVE------STAR 118
L + VN K DA PLH+AA G +V+AL+ Q + ++G S R
Sbjct: 60 LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHYAASKNR 118
Query: 119 HMLGM-----------KNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSAN---GSGET 164
H + + K+ E TA+H A G+L ++ ILL + S N G T
Sbjct: 119 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNT 174
Query: 165 PLYLA 169
PL+LA
Sbjct: 175 PLHLA 179
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 69 SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE 128
SL + + LH A GH +VE L+++ +D K+D
Sbjct: 32 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-----------------KDDAG 74
Query: 129 DTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
+ LH A +G ++VK LLG A + N +G TPL+ AA++ EI+ +L+ +P
Sbjct: 75 WSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
Query: 189 AHEGPNGKTALH 200
+ TA+H
Sbjct: 134 DAKDHYEATAMH 145
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 43/185 (23%)
Query: 9 AAKGEIEPFNQ-LAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMC 67
A G++E + + D+ L + T LH A +T+ I+E
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTE--------------IVEFL 60
Query: 68 PSLLLQVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVE------STAR 118
L + VN K DA PLH+AA G +V+AL+ Q + ++G S R
Sbjct: 61 LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVN-QNGCTPLHYAASKNR 119
Query: 119 HMLGM-----------KNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSAN---GSGET 164
H + + K+ E TA+H A G+L ++ ILL + S N G T
Sbjct: 120 HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL----YYKASTNIQDTEGNT 175
Query: 165 PLYLA 169
PL+LA
Sbjct: 176 PLHLA 180
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 26/118 (22%)
Query: 73 QVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA DA PLH+AA+ GH +VE L ++ G + AR + G
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVL-----------LKHGADVNARDIWGR------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
T LH A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + +G TPL+LAA R H EI +L+
Sbjct: 18 LLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 192 GPNGKTALH 200
G+T LH
Sbjct: 77 DIWGRTPLH 85
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A + G L++V++LL GAD + + G TPL+LAA H EI +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV---NARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 106 VNAQDKFGKTAF 117
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNA+ G PLH+AA GH +VE L+E G + A+
Sbjct: 62 IVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEY-----------GADVNAQD 110
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G TA ++ +G+ D+ +IL
Sbjct: 111 KFGK------TAFDISIDNGNEDLAEIL 132
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A G+ T LH A Q G L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGL------TPLHLAAQLGHLEIVEVLLKYGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL 199
D + + G TPL+LAA R H EI +L+ + GKTA
Sbjct: 72 DV---NAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 23/114 (20%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
++ G PLH+AA+ GH +VE L++ G + A G+ T LH
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKY-----------GADVNAEDNFGI------TPLH 85
Query: 134 EAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 86 LAAIRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + G TPL+LAA H EI +L+ E
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 192 GPNGKTALH 200
G T LH
Sbjct: 77 DNFGITPLH 85
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 61 ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
ERI+ SL + + LH A GH +VE L+++ +D
Sbjct: 24 ERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-------------- 68
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
K+D + LH A +G ++VK LL A + N +G TPL+ AA++ EI+
Sbjct: 69 ---KDDAGWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 181 ILQKCPSPAHEGPNGKTALH 200
+L+ +P + TA+H
Sbjct: 125 LLEGGANPDAKDHYDATAMH 144
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 71/170 (41%), Gaps = 42/170 (24%)
Query: 23 DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA-- 80
D+ L + T LH A +T+ I+E L + VN K DA
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTE--------------IVEFLLQLGVPVNDKDDAGW 74
Query: 81 -PLHVAARYGHAAVVEALIEIAKQESDQEIESGVE------STARH----ML---GMKND 126
PLH+AA G +V+AL+ + + ++G S RH ML G D
Sbjct: 75 SPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 127 EED----TALHEAVQSGSLDVVKILLGADPAFPYSAN---GSGETPLYLA 169
+D TA+H A G+L +V ILL + S N G TPL+LA
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHLA 179
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 19/140 (13%)
Query: 61 ERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHM 120
ERI+ SL + + LH A GH +VE L+++ +D
Sbjct: 24 ERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-------------- 68
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
K+D + LH A +G ++VK LL A + N +G TPL+ AA++ EI+
Sbjct: 69 ---KDDAGWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVM 124
Query: 181 ILQKCPSPAHEGPNGKTALH 200
+L+ +P + TA+H
Sbjct: 125 LLEGGANPDAKDHYDATAMH 144
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 71/170 (41%), Gaps = 42/170 (24%)
Query: 23 DRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDA-- 80
D+ L + T LH A +T+ I+E L + VN K DA
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTE--------------IVEFLLQLGVPVNDKDDAGW 74
Query: 81 -PLHVAARYGHAAVVEALIEIAKQESDQEIESGVE------STARH----ML---GMKND 126
PLH+AA G +V+AL+ + + ++G S RH ML G D
Sbjct: 75 SPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 127 EED----TALHEAVQSGSLDVVKILLGADPAFPYSAN---GSGETPLYLA 169
+D TA+H A G+L +V ILL + S N G TPL+LA
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILL----FYKASTNIQDTEGNTPLHLA 179
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A +G+ T LH A + L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGL------TPLHLAAMNDHLEIVEVLLKNGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL 199
D + + GETPL+L A H EI +L+ + GKTA
Sbjct: 72 DV---NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 17/74 (22%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
++A G+ PLH+ A YGH +VE L ++ G + A+ G TA
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVL-----------LKHGADVNAQDKFGK------TAFD 118
Query: 134 EAVQSGSLDVVKIL 147
++ +G+ D+ +IL
Sbjct: 119 ISIDNGNEDLAEIL 132
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA+ G PLH+AA H +VE L +++G + A +G +
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVL-----------LKNGADVNAIDAIG------E 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
T LH G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 82 TPLHLVAMYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 26/118 (22%)
Query: 73 QVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA DA PLH+AA+ GH +VE L ++ G + A + G
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVL-----------LKHGADVNASDIWGR------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
T LH A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + +G TPL+LAA R H EI +L+
Sbjct: 18 LLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 192 GPNGKTALH 200
G+T LH
Sbjct: 77 DIWGRTPLH 85
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A + G L++V++LL GAD +++ G TPL+LAA H EI +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV---NASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 106 VNAQDKFGKTAF 117
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNA G PLH+AA GH +VE L+E G + A+
Sbjct: 62 IVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEY-----------GADVNAQD 110
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G TA ++ +G+ D+ +IL
Sbjct: 111 KFGK------TAFDISIDNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A G T LH A G L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGH------TPLHLAAMLGHLEIVEVLLKNGA 71
Query: 151 DPAFPYSANG-SGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL 199
D +A G +G TPL+LAA H EI +L+ + GKTA
Sbjct: 72 D----VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL A+ A + + G TPL+LAA H EI +L+
Sbjct: 18 LLEAARAGQDDEVRILT-ANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT 76
Query: 192 GPNGKTALH 200
G G+T LH
Sbjct: 77 GNTGRTPLH 85
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 26/118 (22%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA G PLH+AA GH +VE L +++G + A G
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVL-----------LKNGADVNATGNTGR------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
T LH A + L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 82 TPLHLAAWADHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + +G TPL+LAA R H EI +L+
Sbjct: 18 LLEATRAGQDDEVRILM-ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 192 GPNGKTALH 200
G+T LH
Sbjct: 77 DSWGRTPLH 85
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
T LH A + G L++V++LL GAD +++ G TPL+LAA H EI +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADV---NASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Query: 188 PAHEGPNGKTAL 199
+ GKTA
Sbjct: 106 VNAQDKFGKTAF 117
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 73 QVNAKGDA---PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA DA PLH+AA+ GH +VE L ++ G + A G
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVL-----------LKHGADVNASDSWGR------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
T LH A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 20/88 (22%)
Query: 63 IIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
I+E+ VNA G PLH+AA GH +VE L+E G + A+
Sbjct: 62 IVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEY-----------GADVNAQD 110
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKIL 147
G TA ++ +G+ D+ +IL
Sbjct: 111 KFGK------TAFDISIDNGNEDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 23/115 (20%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G +PLH+AA+YGH + E L + +GV AR + + T LH A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVL-----------LRAGVSRDARTKV------DRTPLHMAAS 76
Query: 138 SGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAH 190
G ++V++LL GAD + + T L+ A H+E+ E+L K + H
Sbjct: 77 EGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEV-VELLIKYGADVH 127
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ P++ + G +PL+LAA H + +L+ S
Sbjct: 6 LLEAARAGQDDEVRILMA--NGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 192 GPNGKTALH 200
+T LH
Sbjct: 64 TKVDRTPLH 72
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 26/118 (22%)
Query: 73 QVNA---KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNA KG+ PLH+AA Y H +VE L ++ G + A +++
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVL-----------LKHGADVNAH------DNDGS 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
T LH A G L++V++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 82 TPLHLAALFGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDL-AEILQKL 135
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A G +T LH A L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKG------NTPLHLAADYDHLEIVEVLLKHGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL 199
D + + G TPL+LAA H EI +L+ + GKTA
Sbjct: 72 DV---NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + G TPL+LAA H EI +L+
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 192 GPNGKTALH 200
+G T LH
Sbjct: 77 DNDGSTPLH 85
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 26/116 (22%)
Query: 74 VNAKGD---APLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDT 130
VNA D PLH+AA G +VE L +++G + A G+ T
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVL-----------LKNGADVNASDSAGI------T 74
Query: 131 ALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
LH A G L++V++LL GAD + + +G TPL+LAA EI E+L K
Sbjct: 75 PLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQLEI-VEVLLK 126
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 23/111 (20%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
++ G PLH+AA GH +VE L ++ G + A G T LH
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVL-----------LKHGADVNAYDRAGW------TPLHL 111
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
A SG L++V++LL GAD + + G T ++ + +++ AEILQ
Sbjct: 112 AALSGQLEIVEVLLKHGAD---VNAQDALGLTAFDISINQGQEDL-AEILQ 158
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA +G D V+IL+ A+ A + + +G TPL+LAAA EI +L+
Sbjct: 10 LLEAAAAGQDDEVRILM-ANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 192 GPNGKTALH 200
G T LH
Sbjct: 69 DSAGITPLH 77
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A+ G+ T L+ A G L++V++LL GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGL------TPLYLATAHGHLEIVEVLLKNGA 71
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL 199
D + + G TPL+LAA H EI+ +L+ + GKTA
Sbjct: 72 DV---NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAF 117
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + G TPLYLA A H EI +L+
Sbjct: 18 LLEAARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 192 GPNGKTALH 200
G T LH
Sbjct: 77 DAIGFTPLH 85
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 26/118 (22%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PL++A +GH +VE L +++G + A +G
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVL-----------LKNGADVNAVDAIGF------ 81
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
T LH A G L++ ++LL GAD + + G+T ++ ++++ AEILQK
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDL-AEILQKL 135
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 47 TQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESD 106
T N E E + + I SL Q + G+ LH+AARY + + L+E + +D
Sbjct: 26 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---AD 82
Query: 107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPL 166
I+ + T LH AV + + V +IL+ + G TPL
Sbjct: 83 ANIQDNMGR--------------TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 167 YLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
LAA A + + +++ GK+ALH
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 17/154 (11%)
Query: 47 TQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESD 106
T N E E + + I SL Q + G+ LH+AARY + + L+E + +D
Sbjct: 27 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---AD 83
Query: 107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPL 166
I+ + T LH AV + + V +IL+ + G TPL
Sbjct: 84 ANIQDNMGR--------------TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 129
Query: 167 YLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
LAA A + + +++ GK+ALH
Sbjct: 130 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 21/150 (14%)
Query: 53 ESVSTKFVERIIEMCPSLLL---QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI 109
E+ VE + ++C + + + PLH AA Y +VVE L++
Sbjct: 16 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ---------- 65
Query: 110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA 169
G + A+ G+ LH A G +V ++L+ A A+ TPL+ A
Sbjct: 66 -HGADVHAKDKGGL------VPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEA 117
Query: 170 AARAHKEISAEILQKCPSPAHEGPNGKTAL 199
AA+ EI +LQ P + +G T L
Sbjct: 118 AAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
+G N E D L EA ++G ++ VK L G TPL+ AA +
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 62
Query: 181 ILQ 183
+LQ
Sbjct: 63 LLQ 65
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 21/150 (14%)
Query: 53 ESVSTKFVERIIEMCPSLLL---QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI 109
E+ VE + ++C + + + PLH AA Y +VVE L++
Sbjct: 14 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ---------- 63
Query: 110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA 169
G + A+ G+ LH A G +V ++L+ A A+ TPL+ A
Sbjct: 64 -HGADVHAKDKGGL------VPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEA 115
Query: 170 AARAHKEISAEILQKCPSPAHEGPNGKTAL 199
AA+ EI +LQ P + +G T L
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 123 MKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEIL 182
M N E D L EA ++G ++ VK L G TPL+ AA + +L
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 183 Q 183
Q
Sbjct: 63 Q 63
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 21/150 (14%)
Query: 53 ESVSTKFVERIIEMCPSLLL---QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEI 109
E+ VE + ++C + + + PLH AA Y +VVE L++
Sbjct: 18 EAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ---------- 67
Query: 110 ESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA 169
G + A+ G+ LH A G +V ++L+ A A+ TPL+ A
Sbjct: 68 -HGADVHAKDKGGL------VPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEA 119
Query: 170 AARAHKEISAEILQKCPSPAHEGPNGKTAL 199
AA+ EI +LQ P + +G T L
Sbjct: 120 AAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
+ + N E D L EA ++G ++ VK L G TPL+ AA +
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 181 ILQ 183
+LQ
Sbjct: 65 LLQ 67
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
L EA ++G D V+IL+ GAD A + + +G TPL+LAA H E+ +L+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 190 HEGPNGKTAL 199
+ GKTA
Sbjct: 67 AQDKFGKTAF 76
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AAR GH VV+ L +E+G + A+ G TA ++
Sbjct: 39 GSTPLHLAARNGHLEVVKLL-----------LEAGADVNAQDKFGK------TAFDISID 81
Query: 138 SGSLDVVKIL 147
+G+ D+ +IL
Sbjct: 82 NGNEDLAEIL 91
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 16/93 (17%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILL--GA 150
L+E A+ D E+ +G + A+ G T LH A ++G L+VVK+LL GA
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGS------TPLHLAARNGHLEVVKLLLEAGA 63
Query: 151 DPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
D + + G+T ++ ++++ AEILQ
Sbjct: 64 D---VNAQDKFGKTAFDISIDNGNEDL-AEILQ 92
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 17/71 (23%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH A +GH VVE L++ + ++ + D+ LH+A +
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQ-----------------HKALVNTTGYQNDSPLHDAAK 85
Query: 138 SGSLDVVKILL 148
+G +D+VK+LL
Sbjct: 86 NGHVDIVKLLL 96
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 7/36 (19%)
Query: 70 LLLQ----VNAKG---DAPLHVAARYGHAAVVEALI 98
LLLQ VN G D+PLH AA+ GH +V+ L+
Sbjct: 61 LLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
L EA ++G D V+IL+ GAD A + + +G TPL+LAA H E+ +L+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA---AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 190 HEGPNGKTAL 199
+ GKTA
Sbjct: 85 AQDKFGKTAF 94
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 17/70 (24%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G PLH+AAR GH VV+ L +E+G + A+ G TA ++
Sbjct: 57 GSTPLHLAARNGHLEVVKLL-----------LEAGADVXAQDKFGK------TAFDISID 99
Query: 138 SGSLDVVKIL 147
+G+ D+ +IL
Sbjct: 100 NGNEDLAEIL 109
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 20/134 (14%)
Query: 73 QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
Q+ GD+ LH+A + A+ +I K + L +N+ + T L
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-------------LAFLNFQNNLQQTPL 49
Query: 133 HEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP---- 188
H AV + ++ + LLGA P + G TPL+LA + + Q C +P
Sbjct: 50 HLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108
Query: 189 --AHEGPNGKTALH 200
NG T LH
Sbjct: 109 ILKATNYNGHTCLH 122
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 69 SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE 128
S+L N G LH+A+ +G+ +VE L+ + + QE +G
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------- 151
Query: 129 DTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
TALH AV + D+V +LL GAD G +P L R I ++ Q
Sbjct: 152 RTALHLAVDLQNPDLVSLLLKCGADVN---RVTYQGYSPYQLTWGRPSTRIQQQLGQ 205
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 132 LHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHE 191
L EA ++G D V+IL+ A+ A + + G TPL+LAA H EI +L+ +
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 192 GPNGKTAL 199
GKTA
Sbjct: 65 DKFGKTAF 72
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 20/78 (25%)
Query: 73 QVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEED 129
VNAK G PLH+AAR GH +VE L +++G + A+ G
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVL-----------LKAGADVNAQDKFGK------ 69
Query: 130 TALHEAVQSGSLDVVKIL 147
TA ++ +G+ D+ +IL
Sbjct: 70 TAFDISIDNGNEDLAEIL 87
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 97 LIEIAKQESDQEIE----SGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP 152
L+E A+ D E+ +G + A+ G T LH A + G L++V++LL A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGY------TPLHLAAREGHLEIVEVLLKA-G 58
Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
A + + G+T ++ ++++ AEILQK
Sbjct: 59 ADVNAQDKFGKTAFDISIDNGNEDL-AEILQKA 90
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 60 VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
+ I SL Q + G+ LH+AARY + + L+E + +D I+ +
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---ADAXIQDNMGR---- 56
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISA 179
T LH AV + + V +ILL + G TPL LAA A + +
Sbjct: 57 ----------TPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLE 106
Query: 180 EILQKCPSPAHEGPNGKTALH 200
+++ GK+ALH
Sbjct: 107 DLINSHADVNAVDDLGKSALH 127
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 24/140 (17%)
Query: 73 QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
Q A G+ LH+AA Y + L+E A + + + S + E TAL
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY------------EGQTAL 79
Query: 133 HEAVQSGSLDVVKILLGADPAFPYSANGS------------GETPLYLAAARAHKEISAE 180
H AV + ++++V+ LL + A GS GE PL AA +EI
Sbjct: 80 HIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRL 139
Query: 181 ILQKCPSPAHEGPNGKTALH 200
+++ + G T LH
Sbjct: 140 LIEHGADIRAQDSLGNTVLH 159
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 123 MKNDEEDTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAE 180
+ D T LH A + G L +V L+ GADP+ +G G + ++LAA H I A
Sbjct: 71 LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAY 127
Query: 181 ILQKCPSPAHEGPNGKTAL 199
++ K NG T L
Sbjct: 128 LIAKGQDVDMMDQNGMTPL 146
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 22/96 (22%)
Query: 81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS 140
PLH A R GH ++V +++ K +D + G E + +H A Q G
Sbjct: 79 PLHWATRQGHLSMV---VQLMKYGADPSLIDG--------------EGCSCIHLAAQFGH 121
Query: 141 LDVVKILL--GADPAFPYSANGSGETPLYLAAARAH 174
+V L+ G D + +G TPL AA R H
Sbjct: 122 TSIVAYLIAKGQDVDM---MDQNGMTPLMWAAYRTH 154
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHM---------------- 120
G P H+A G+ VV++L + K + ++ GV T H+
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV--TCLHLAVGKKWFEVSQFLIEN 129
Query: 121 ---LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
+ +K+ LH A GSL ++++L G + + G TPL+ A A H +
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 178 SAEILQK 184
+ +++K
Sbjct: 190 AVLLVEK 196
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 60 VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
V+ ++ PSLLLQ + G PLH + + + L+ S +E+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------------SKMENV--N 63
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP--YSANGSGETPLYLAAARAHKEI 177
+ +D T H A G+L+VVK L P P G T L+LA + E+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 178 SAEILQKCPS 187
S +++ S
Sbjct: 123 SQFLIENGAS 132
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHM---------------- 120
G P H+A G+ VV++L + K + ++ GV T H+
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV--TCLHLAVGKKWFEVSQFLIEN 129
Query: 121 ---LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
+ +K+ LH A GSL ++++L G + + G TPL+ A A H +
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 178 SAEILQK 184
+ +++K
Sbjct: 190 AVLLVEK 196
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 60 VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
V+ ++ PSLLLQ + G PLH + + + L+ S +E+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------------SKMENV--N 63
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP--YSANGSGETPLYLAAARAHKEI 177
+ +D T H A G+L+VVK L P P G T L+LA + E+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 178 SAEILQKCPS 187
S +++ S
Sbjct: 123 SQFLIENGAS 132
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 20/129 (15%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
GD+ LH+A + A+ +I K + L +N+ + T LH AV
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGD-------------LAFLNFQNNLQQTPLHLAVI 51
Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP------AHE 191
+ ++ + LLGA P + G TPL+LA + + Q C +P
Sbjct: 52 TNQPEIAEALLGAG-CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 110
Query: 192 GPNGKTALH 200
NG T LH
Sbjct: 111 NYNGHTCLH 119
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 21/117 (17%)
Query: 69 SLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEE 128
S+L N G LH+A+ +G+ +VE L+ + + QE +G
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------- 148
Query: 129 DTALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
TALH AV + D+V +LL GAD G +P L R I ++ Q
Sbjct: 149 RTALHLAVDLQNPDLVSLLLKCGADVN---RVTYQGYSPYQLTWGRPSTRIQQQLGQ 202
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 16/111 (14%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
+G+ PLH+A G A V L +S +L N T LH A
Sbjct: 74 RGNTPLHLACEQGCLASVGVL-----------TQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 137 QSGSLDVVKIL--LGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKC 185
G L +V++L LGAD N G T L+LA + ++ +L KC
Sbjct: 123 IHGYLGIVELLVSLGADVNAQEPCN--GRTALHLAVDLQNPDL-VSLLLKC 170
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 126 DEEDTALHEAV----QSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEI 181
++ D+ LH A+ ++ +++V++ + G D AF N +TPL+LA EI+ +
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKG-DLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 61
Query: 182 LQKCPSPAHEGPNGKTALH 200
L P G T LH
Sbjct: 62 LGAGCDPELRDFRGNTPLH 80
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 22/127 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEI-AKQESDQEIESGVESTARHM---------------- 120
G P H+A G+ VV++L + K + ++ GV T H+
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV--TCLHLAVGKKWFEVSQFLIEN 129
Query: 121 ---LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
+ +K+ LH A GSL ++++L G + + G TPL+ A A H +
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189
Query: 178 SAEILQK 184
+ +++K
Sbjct: 190 AVLLVEK 196
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 17/130 (13%)
Query: 60 VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
V+ ++ PSLLLQ + G PLH + + + L+ S +E+ +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------------SKMENV--N 63
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFP--YSANGSGETPLYLAAARAHKEI 177
+ +D T H A G+L+VVK L P P G T L+LA + E+
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 178 SAEILQKCPS 187
S +++ S
Sbjct: 123 SQFLIENGAS 132
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 17/141 (12%)
Query: 60 VERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARH 119
+ I SL Q + G+ LH+AARY + + L+E + +D I+ +
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS---ADANIQDNMGR---- 59
Query: 120 MLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISA 179
T LH AV + + V +IL+ + G TPL LAA A + +
Sbjct: 60 ----------TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109
Query: 180 EILQKCPSPAHEGPNGKTALH 200
+++ GK+ALH
Sbjct: 110 DLINSHADVNAVDDLGKSALH 130
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 17/73 (23%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
N +G+ PL VA++YG + +V+ L+E+ G + +AR + G+ TA
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLEL-----------GADISARDLTGL------TAEAS 173
Query: 135 AVQSGSLDVVKIL 147
A G +V+KI
Sbjct: 174 ARIFGRQEVIKIF 186
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPS 187
TALH A Q + +VK L+G + + G+TP+ LAA E+ ++Q+ S
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
+ +G PL AA +G AVVE L++ Q + G ES AL
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRES---------------ALSL 91
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A G D+VK+LL G D Y NG TPL A H + +L+ P E
Sbjct: 92 ACSKGYTDIVKMLLDCGVD-VNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGADPTIET 148
Query: 193 PNGKTAL 199
+G ++
Sbjct: 149 DSGYNSM 155
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM--KNDEEDTALHEA 135
G+ PL +AA VV L+E Q + E + +T H L M N E++AL
Sbjct: 149 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 208
Query: 136 VQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
+ G L + L +N G TPL LAA EI ILQ+
Sbjct: 209 MYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 256
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 130 TALHEAVQSGSLDVVKILL--GAD------PAFPYSANGS----GETPLYLAAARAHKEI 177
+ALH A++ SL VK+L+ GAD F G+ GE PL LAA ++
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 164
Query: 178 SAEILQKCPSPAH-EGPN--GKTALH 200
+L+ PA E + G T LH
Sbjct: 165 VTYLLENPHQPASLEATDSLGNTVLH 190
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 23/113 (20%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQ----------ESDQEIESGVESTARHMLGMKNDE 127
G P+H+A +V AL+E AK+ E D+ + + S +H G
Sbjct: 84 GQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQ---- 139
Query: 128 EDTALHEAVQSGS--LDVVKIL--LGADPAFPYSANGSGETPLYLAAARAHKE 176
TALH V G L+ +KIL LGA P + + + ETPL A ++E
Sbjct: 140 --TALHWCVGLGPEYLEXIKILVQLGASPT---AKDKADETPLXRAXEFRNRE 187
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 17/66 (25%)
Query: 82 LHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSL 141
+HVAAR G V L IE+GV T ++ G TALH A + G +
Sbjct: 24 IHVAARKGQTDEVRRL-----------IETGVSPTIQNRFGC------TALHLACKFGCV 66
Query: 142 DVVKIL 147
D K L
Sbjct: 67 DTAKYL 72
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
+ +G PL AA +G AVVE L++ Q + G ES AL
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRES---------------ALSL 73
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A G D+VK+LL G D Y NG TPL A H + +L+ P E
Sbjct: 74 ACSKGYTDIVKMLLDCGVD-VNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGADPTIET 130
Query: 193 PNGKTAL 199
+G ++
Sbjct: 131 DSGYNSM 137
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 73 QVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTAL 132
+ + GD PLH+A G+ V L+ + +Q + L + N+ T L
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE-------------LDIYNNLRQTPL 50
Query: 133 HEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLA 169
H AV + VV++L+ A A P + + G+T +LA
Sbjct: 51 HLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAHLA 86
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
+ +G PL AA +G AVVE L++ Q + G ES AL
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRES---------------ALSL 75
Query: 135 AVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPAHEG 192
A G D+VK+LL G D Y NG TPL A H + +L+ P E
Sbjct: 76 ACSKGYTDIVKMLLDCGVD-VNEYDWNGG--TPLLYAVHGNHVKCVKMLLESGADPTIET 132
Query: 193 PNGKTAL 199
+G ++
Sbjct: 133 DSGYNSM 139
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGM--KNDEEDTALHEA 135
G+ PL +AA VV L+E Q + E + +T H L M N E++AL
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195
Query: 136 VQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
+ G L + L +N G TPL LAA EI ILQ+
Sbjct: 196 MYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 130 TALHEAVQSGSLDVVKILL--GAD------PAFPYSANGS----GETPLYLAAARAHKEI 177
+ALH A++ SL VK+L+ GAD F G+ GE PL LAA ++
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 178 SAEILQKCPSPAH-EGPN--GKTALH 200
+L+ PA E + G T LH
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLH 177
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 123 MKNDEEDTALHEAVQSGSLDVVKIL--LGADPAFPYSANGSGETPLYLAAA 171
+ NDE TALH AV +G ++VK L G + +A+ G TPL+ AA+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAAS 112
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 123 MKNDEEDTALHEAVQSGSLDVVKIL--LGADPAFPYSANGSGETPLYLAAA 171
+ NDE TALH AV +G ++VK L G + +A+ G TPL+ AA+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN---AADSDGWTPLHCAAS 112
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 17/154 (11%)
Query: 47 TQNKEGESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESD 106
T N E E + + I SL Q + G LH+AA Y + + L+E + +D
Sbjct: 26 TGNSEEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEAS---AD 82
Query: 107 QEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPL 166
I+ + T LH AV + + V +IL+ + G TPL
Sbjct: 83 ANIQDNMGR--------------TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL 128
Query: 167 YLAAARAHKEISAEILQKCPSPAHEGPNGKTALH 200
LAA A + + +++ GK+ALH
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 17/108 (15%)
Query: 81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS 140
PLH AA +V+ L+ SG++ + +D+ +TAL+ AV SG+
Sbjct: 65 PLHQAATLEDTKIVKILLF-----------SGLDDSQF------DDKGNTALYYAVDSGN 107
Query: 141 LDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSP 188
VK+ + + + +T Y A I + L + PS
Sbjct: 108 XQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPST 155
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
++ G L+ A GH +VE L + +E ++ LG DTALH
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLF----------TQPNIELNQQNKLG------DTALH 145
Query: 134 EAVQSGSLDVVKILL 148
A G D+V++LL
Sbjct: 146 AAAWKGYADIVQLLL 160
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 127 EEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
E++ L +AVQ+ +D+V+ LL + G TPL+ A + ++I +L+
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 187 SPAHEGPNGKT 197
P NG T
Sbjct: 84 DPVLRKKNGAT 94
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 81 PLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGS 140
PLHVAA H V+E L + G + A LG TALH A +G
Sbjct: 250 PLHVAAERAHNDVMEVLHK-----------HGAKMNALDSLG------QTALHRAALAGH 292
Query: 141 LDVVKILL--GADPAF 154
L ++LL G+DP+
Sbjct: 293 LQTCRLLLSYGSDPSI 308
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 22/98 (22%)
Query: 62 RIIEMCPSLLLQVNAK---GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTAR 118
RI+++ V+AK G PLH A YGH V E L ++ G A
Sbjct: 72 RIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL-----------LKHGACVNAM 120
Query: 119 HMLGMKNDEEDTALHEAVQSGSLDVVKILL--GADPAF 154
+ T LHEA ++V +LL GADP
Sbjct: 121 DLWQF------TPLHEAASKNRVEVCSLLLSHGADPTL 152
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 70/161 (43%), Gaps = 21/161 (13%)
Query: 42 IIASYTQNKEGESVSTKFVERIIEMCPSLLLQVNA---KGDAPLHVAARYGHAAVVEALI 98
+ Y +++ E+ + E+++ + L + +A + PLH+AA Y +V+ L+
Sbjct: 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLL 78
Query: 99 EIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSA 158
+ G + A+ G+ LH A G +V ++LL A +
Sbjct: 79 Q-----------HGADVHAKDKGGL------VPLHNACSYGHYEVTELLL-KHGACVNAM 120
Query: 159 NGSGETPLYLAAARAHKEISAEILQKCPSPAHEGPNGKTAL 199
+ TPL+ AA++ E+ + +L P +GK+A+
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAV 161
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 127 EEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCP 186
E++ L +AVQ+ +D+V+ LL + G TPL+ A + ++I +L+
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 187 SPAHEGPNGKT 197
P NG T
Sbjct: 64 DPVLRKKNGAT 74
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G+ PL +AA A+V+ L++ + Q +D V +T H L D +T +
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVAD--NTVDNTKFV 205
Query: 138 SGSLDVVKILLGAD--PAFPYS--ANGSGETPLYLAAARAHKEISAEILQK 184
+ + + ++LGA P N G TPL LAA+ + A ILQ+
Sbjct: 206 TSXYNEI-LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
V GD LH+A + H ++ L+ S L ++ND TALH
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF--------------SAGHEYLDLQNDLGQTALH 50
Query: 134 EAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAA-ARAHKEISAEILQKCPSPAH 190
A G V+ L A + G G T L+LA RAH + +LQ P P+H
Sbjct: 51 LAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHT-CACVLLQ--PRPSH 104
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALH 133
V GD LH+A + H ++ L+ S L ++ND TALH
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGF--------------SAGHEYLDLQNDLGQTALH 50
Query: 134 EAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAA-ARAHKEISAEILQKCPSPAH 190
A G V+ L A + G G T L+LA RAH + +LQ P P+H
Sbjct: 51 LAAILGEASTVEKLYAAGAGVLVAERG-GHTALHLACRVRAHT-CACVLLQ--PRPSH 104
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 93 VVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADP 152
V+ +++A Q S ++ +++ L K + +TALH A D +K+LL
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGH--LDAKAADGNTALHYAALYNQPDCLKLLLKGR- 249
Query: 153 AFPYSANGSGETPLYLAAARAHKEISAEILQK 184
A + N +GET L +A + HKE E+L++
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECE-ELLEQ 280
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 25/86 (29%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VVE L V+ TA ++ G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFL---------------VKHTASNV-GHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVKILLGADPAFPYSANGSG 162
G +VV ++ ANG+G
Sbjct: 146 LYGRNEVVSLM---------QANGAG 162
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
LH A G L++++ LL GAD P + TPL A H +L K
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAP---DKHHITPLLSAVYEGHVSCVKLLLSKGADKT 95
Query: 190 HEGPNGKTAL 199
+GP+G TAL
Sbjct: 96 VKGPDGLTAL 105
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 25/86 (29%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VVE L V+ TA ++ G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFL---------------VKHTASNV-GHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVKILLGADPAFPYSANGSG 162
G +VV ++ ANG+G
Sbjct: 146 LYGRNEVVSLM---------QANGAG 162
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 25/86 (29%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VVE L V+ TA ++ G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFL---------------VKHTASNV-GHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVKILLGADPAFPYSANGSG 162
G +VV ++ ANG+G
Sbjct: 146 LYGRNEVVSLM---------QANGAG 162
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 25/86 (29%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VVE L V+ TA ++ G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFL---------------VKHTASNV-GHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVKILLGADPAFPYSANGSG 162
G +VV ++ ANG+G
Sbjct: 146 LYGRNEVVSLM---------QANGAG 162
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 25/86 (29%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
+G+ PLH+AA+ GH VVE L V+ TA ++ G +N + DTA A
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFL---------------VKHTASNV-GHRNHKGDTACDLAR 145
Query: 137 QSGSLDVVKILLGADPAFPYSANGSG 162
G +VV ++ ANG+G
Sbjct: 146 LYGRNEVVSLM---------QANGAG 162
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 17/100 (17%)
Query: 78 GDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAVQ 137
G+A +H AAR G ++ L+E ++D IE ++E + LH A +
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEF---QADVNIE--------------DNEGNLPLHLAAK 112
Query: 138 SGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
G L VV+ L+ + N G+T LA E+
Sbjct: 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 152
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 121 LGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAE 180
L K + +TALH A D +K+LL A + N +GET L +A + HKE E
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECE-E 257
Query: 181 ILQK 184
+L++
Sbjct: 258 LLEQ 261
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 14/106 (13%)
Query: 6 YEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERIIE 65
+ AA K + + +QL DR + ++ + + +L V + S K V + E
Sbjct: 49 WTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGS-----------DKCVRLLAE 97
Query: 66 MCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIES 111
L + G LH+AA Y VVEAL+E+ +D E+E
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG---ADIEVED 140
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 5 LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESVSTKFVERII 64
+ AA K + + +QL DR + ++ + + +L V + S K V +
Sbjct: 49 WWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGS-----------DKCVRLLA 97
Query: 65 EMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIES 111
E L + G LH+AA Y VVEAL+E+ +D E+E
Sbjct: 98 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG---ADIEVED 141
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIE 99
++ GD L++AAR G+ ++V+AL++
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLD 304
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 26/116 (22%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
N G L AA GH V+ L+E +++ D +ND TAL E
Sbjct: 103 NRYGGNALIPAAEKGHIDNVKLLLEDGREDID----------------FQNDFGYTALIE 146
Query: 135 AV--QSGS---LDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
AV + G+ D+VK+L+ GAD + + SG T + A + + EIS + Q
Sbjct: 147 AVGLREGNQLYQDIVKLLMENGADQSIK---DNSGRTAMDYANQKGYTEISKILAQ 199
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 26/126 (20%)
Query: 74 VNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHML---------GMK 124
VN++GD PL +A +++ E+ +Q D IE+ + R ML G
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQN--EVNRQGVD--IEAARKEEERIMLRDARQWLNSGHI 190
Query: 125 ND-----EEDTALHEAVQSGSLDVVKILLGADPAFPYSAN---GSGETPLYLAAARAHKE 176
ND TALH A G +V+K+L+ A Y N G TPL+ AAA KE
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQA----RYDVNIKDYDGWTPLH-AAAHWGKE 245
Query: 177 ISAEIL 182
+ IL
Sbjct: 246 EACRIL 251
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 130 TALHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
TALH+A ++D+VK L+ GA+ P + G PL+ AA+ + +I+ ++ +
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANINQP---DNEGWIPLHAAASCGYLDIAEYLISQ 128
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 77 KGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHEAV 136
G PL +AAR +VE LI +D +I + S TALH A
Sbjct: 117 DGTTPLILAARLAIEGMVEDLIT-----ADADINAADNSGK------------TALHWAA 159
Query: 137 QSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQK 184
+ + V ILL A + + ETPL+LAA E S +L
Sbjct: 160 AVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYEASKALLDN 206
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 53 ESVSTKFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESG 112
E + + + ++ L ++ G+ LH+AAR+ A + L++ + Q
Sbjct: 26 EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQ----- 80
Query: 113 VESTARHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAAR 172
++T R T LH AV + ++ V +ILL + G TPL LAA
Sbjct: 81 -DNTGR-----------TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL 128
Query: 173 AHKEISAEILQKCPSPAHEGPNGKTALH 200
A + + +++ +GKTALH
Sbjct: 129 AIEGMVEDLITADADINAADNSGKTALH 156
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 130 TALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHK 175
TALH + + + +K+LL + AN SGETPL +A H+
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRLKHE 251
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 132 LHEAVQSGSLDVVKILL--GADPAFPYSANGSGETPLYLAAARAHKEISAEILQKCPSPA 189
LH A G L++++ LL GAD P + TPL A H +L K
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHH---ITPLLSAVYEGHVSCVKLLLSKGADKT 100
Query: 190 HEGPNGKTAL 199
+GP+G TA
Sbjct: 101 VKGPDGLTAF 110
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 45/186 (24%)
Query: 5 LYEAAAKGEIEPFNQLAIDRQLGSLVTHKKNTVLHVNIIASYTQNKEGESV-------ST 57
L AAA+G+++ +L LH ++ N+ G++ ST
Sbjct: 6 LSGAAARGDVQEVRRL-----------------LHRELVHPDALNRFGKTALQVMMFGST 48
Query: 58 KFVERIIEMCPSLLLQVNAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTA 117
+++ S +Q + G +P+H AAR G ++ L+E +D + G +
Sbjct: 49 AIALELLKQGASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVE---HGADVNVPDGTGALP 104
Query: 118 RHMLGMKNDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEI 177
H+ AVQ G VV L A + + + G TPL LA R +++
Sbjct: 105 IHL--------------AVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDL 148
Query: 178 SAEILQ 183
+ILQ
Sbjct: 149 -VDILQ 153
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 20/109 (18%)
Query: 75 NAKGDAPLHVAARYGHAAVVEALIEIAKQESDQEIESGVESTARHMLGMKNDEEDTALHE 134
+ G +P+H AAR G ++ L+E +D + G + H+
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVE---HGADVNVPDGTGALPIHL-------------- 113
Query: 135 AVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
AVQ G VV L A + + + G TPL LA R +++ +ILQ
Sbjct: 114 AVQEGHTAVVSFL--AAESDLHRRDARGLTPLELALQRGAQDL-VDILQ 159
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 130 TALHEAVQSGSLDVVKILL--GAD------PAFPYSANGS----GETPLYLAAARAHKEI 177
+ALH A++ SL VK+L+ GA+ F G+ GE PL LAA ++
Sbjct: 97 SALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDV 156
Query: 178 SAEILQKCPSPAH---EGPNGKTALH 200
+ +L+ PA G T LH
Sbjct: 157 VSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 125 NDEEDTALHEAVQSGSLDVVKILLGADPAFPYSANGSGETPLYLAAARAHKEISAEILQ 183
N+E TALH A+ + +V L+ A A S + G TPL+ AA+ I ++Q
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQ 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,058,582
Number of Sequences: 62578
Number of extensions: 254991
Number of successful extensions: 933
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 305
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)