Query 047845
Match_columns 1801
No_of_seqs 191 out of 242
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:43:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1020 Sister chromatid cohes 100.0 1E-240 2E-245 2244.4 103.7 1559 10-1768 7-1684(1692)
2 PF12830 Nipped-B_C: Sister ch 100.0 6.3E-44 1.4E-48 395.5 15.5 181 1342-1542 1-187 (187)
3 KOG0413 Uncharacterized conser 99.6 1.7E-13 3.6E-18 170.5 32.8 547 876-1557 575-1180(1529)
4 PF12765 Cohesin_HEAT: HEAT re 98.9 1.1E-09 2.4E-14 92.4 3.5 42 860-901 1-42 (42)
5 PTZ00429 beta-adaptin; Provisi 98.5 0.00013 2.8E-09 96.8 35.0 133 840-976 107-245 (746)
6 PTZ00429 beta-adaptin; Provisi 98.3 0.0014 3.1E-08 87.2 36.9 143 830-978 64-207 (746)
7 PF01602 Adaptin_N: Adaptin N 98.2 0.00085 1.8E-08 86.7 32.0 132 839-976 80-218 (526)
8 KOG1020 Sister chromatid cohes 98.0 0.016 3.6E-07 78.9 36.9 258 747-1035 690-962 (1692)
9 PF01602 Adaptin_N: Adaptin N 97.7 0.032 6.9E-07 72.3 33.3 137 838-977 42-179 (526)
10 KOG0414 Chromosome condensatio 97.6 0.057 1.2E-06 72.6 33.0 83 1335-1417 983-1066(1251)
11 PF12717 Cnd1: non-SMC mitotic 97.6 0.00025 5.3E-09 79.1 10.1 86 1345-1430 21-108 (178)
12 KOG1059 Vesicle coat complex A 97.5 0.0098 2.1E-07 75.8 23.3 87 890-979 120-210 (877)
13 KOG1060 Vesicle coat complex A 97.2 0.038 8.2E-07 71.3 22.9 97 841-941 111-210 (968)
14 PF10508 Proteasom_PSMB: Prote 96.6 1.9 4.1E-05 56.2 32.6 124 853-978 16-147 (503)
15 KOG2023 Nuclear transport rece 96.6 4 8.6E-05 52.9 34.6 143 834-980 124-282 (885)
16 PF12717 Cnd1: non-SMC mitotic 96.6 0.029 6.3E-07 62.7 13.9 105 833-938 20-137 (178)
17 KOG1824 TATA-binding protein-i 96.3 6.9 0.00015 52.6 36.4 111 834-944 43-207 (1233)
18 PLN03200 cellulose synthase-in 96.0 3.3 7.3E-05 60.8 31.8 221 1150-1420 409-643 (2102)
19 PF12348 CLASP_N: CLASP N term 96.0 0.092 2E-06 60.6 13.9 140 839-978 54-205 (228)
20 KOG1060 Vesicle coat complex A 95.9 2.8 6.2E-05 55.1 27.3 151 816-977 53-207 (968)
21 PF12348 CLASP_N: CLASP N term 95.9 0.08 1.7E-06 61.1 13.1 113 829-944 85-210 (228)
22 KOG2025 Chromosome condensatio 95.7 0.059 1.3E-06 69.0 11.6 136 835-983 123-263 (892)
23 PRK09687 putative lyase; Provi 95.3 0.12 2.5E-06 62.1 11.7 129 837-976 89-218 (280)
24 KOG1525 Sister chromatid cohes 95.3 0.14 3.1E-06 71.2 13.9 165 831-1015 293-474 (1266)
25 COG5218 YCG1 Chromosome conden 95.3 0.071 1.5E-06 66.8 9.8 135 835-983 129-270 (885)
26 PF10508 Proteasom_PSMB: Prote 95.2 0.19 4.1E-06 65.3 14.0 146 834-979 73-231 (503)
27 PF13646 HEAT_2: HEAT repeats; 94.6 0.21 4.6E-06 48.4 9.6 84 841-935 2-87 (88)
28 PRK13800 putative oxidoreducta 94.5 0.17 3.7E-06 70.2 11.8 120 840-976 777-896 (897)
29 PLN03200 cellulose synthase-in 94.4 12 0.00025 55.6 29.0 140 839-979 405-559 (2102)
30 KOG1241 Karyopherin (importin) 94.4 26 0.00056 46.6 30.9 403 837-1270 89-535 (859)
31 PRK09687 putative lyase; Provi 94.3 0.31 6.6E-06 58.6 11.8 129 838-977 54-186 (280)
32 cd00020 ARM Armadillo/beta-cat 93.6 0.18 4E-06 51.0 7.2 101 839-939 8-119 (120)
33 KOG0213 Splicing factor 3b, su 93.6 28 0.00061 46.0 26.8 57 837-895 513-571 (1172)
34 KOG2171 Karyopherin (importin) 93.2 51 0.0011 46.0 31.9 140 835-975 115-274 (1075)
35 PF12719 Cnd3: Nuclear condens 93.1 1.8 3.9E-05 52.5 15.6 150 1244-1419 35-185 (298)
36 COG5098 Chromosome condensatio 93.0 0.77 1.7E-05 58.9 12.2 105 840-944 301-419 (1128)
37 KOG1248 Uncharacterized conser 92.9 40 0.00086 47.1 28.3 148 1133-1285 723-876 (1176)
38 PF13513 HEAT_EZ: HEAT-like re 92.7 0.096 2.1E-06 46.8 3.0 52 852-903 1-54 (55)
39 PRK13800 putative oxidoreducta 92.5 0.51 1.1E-05 65.6 11.1 118 839-978 653-770 (897)
40 KOG1242 Protein containing ada 90.4 1.5 3.2E-05 56.5 11.0 137 834-978 250-400 (569)
41 KOG1061 Vesicle coat complex A 89.9 65 0.0014 43.3 25.1 93 886-981 95-191 (734)
42 KOG2011 Sister chromatid cohes 89.9 2.1 4.5E-05 58.7 12.2 143 1246-1420 297-441 (1048)
43 cd00020 ARM Armadillo/beta-cat 88.9 0.93 2E-05 45.8 6.5 97 881-977 11-118 (120)
44 TIGR02270 conserved hypothetic 88.9 3.1 6.6E-05 52.8 12.2 116 840-975 88-203 (410)
45 PF12755 Vac14_Fab1_bd: Vacuol 88.2 2 4.3E-05 43.5 8.1 75 828-903 17-93 (97)
46 COG5181 HSH155 U2 snRNP splice 87.6 73 0.0016 41.6 22.2 54 874-927 518-580 (975)
47 PF13646 HEAT_2: HEAT repeats; 87.5 1.7 3.8E-05 42.0 7.1 80 884-974 6-87 (88)
48 COG5096 Vesicle coat complex, 86.7 1.4E+02 0.0031 40.8 29.7 136 840-982 94-236 (757)
49 KOG1824 TATA-binding protein-i 86.3 1.5E+02 0.0033 40.8 29.6 456 924-1414 345-885 (1233)
50 KOG0414 Chromosome condensatio 85.4 8.5 0.00018 53.0 13.7 78 1345-1422 915-997 (1251)
51 KOG1062 Vesicle coat complex A 84.9 1.6E+02 0.0036 39.9 27.1 99 842-944 111-212 (866)
52 KOG2259 Uncharacterized conser 84.8 4.3 9.3E-05 52.6 10.0 93 843-938 203-308 (823)
53 KOG2956 CLIP-associating prote 84.6 12 0.00027 47.1 13.6 70 1108-1178 408-480 (516)
54 PF05918 API5: Apoptosis inhib 82.5 2.8 6E-05 54.6 7.4 89 889-980 34-126 (556)
55 KOG1242 Protein containing ada 82.4 9.9 0.00021 49.4 12.1 127 832-963 210-346 (569)
56 KOG1077 Vesicle coat complex A 81.4 2.1E+02 0.0045 38.5 23.4 73 829-903 140-213 (938)
57 PF02985 HEAT: HEAT repeat; I 81.2 2.2 4.9E-05 33.8 3.8 24 881-904 4-27 (31)
58 KOG2171 Karyopherin (importin) 80.5 2.7E+02 0.0059 39.3 36.0 131 840-977 6-145 (1075)
59 KOG1061 Vesicle coat complex A 79.5 20 0.00044 47.8 13.5 129 1249-1421 292-421 (734)
60 PF12830 Nipped-B_C: Sister ch 79.4 2.9 6.3E-05 47.3 5.5 65 881-945 12-79 (187)
61 COG5096 Vesicle coat complex, 79.3 25 0.00055 47.5 14.6 97 880-977 95-193 (757)
62 PF12755 Vac14_Fab1_bd: Vacuol 79.1 10 0.00022 38.6 8.6 77 855-931 3-88 (97)
63 KOG0413 Uncharacterized conser 79.0 12 0.00027 50.3 11.2 126 851-981 944-1075(1529)
64 PF10363 DUF2435: Protein of u 78.8 14 0.0003 37.2 9.4 84 840-923 5-89 (92)
65 KOG1525 Sister chromatid cohes 77.8 6.6 0.00014 55.6 9.1 144 835-980 216-372 (1266)
66 PF02985 HEAT: HEAT repeat; I 77.4 3.9 8.3E-05 32.4 4.0 30 839-868 1-30 (31)
67 KOG1077 Vesicle coat complex A 75.9 25 0.00053 46.4 12.4 55 909-967 366-421 (938)
68 KOG1078 Vesicle coat complex C 75.8 3.1E+02 0.0067 37.4 24.0 115 1290-1422 424-539 (865)
69 PF13513 HEAT_EZ: HEAT-like re 73.9 5.4 0.00012 35.5 4.6 48 891-938 1-55 (55)
70 KOG1949 Uncharacterized conser 73.6 14 0.00031 48.3 9.6 102 840-941 264-371 (1005)
71 COG5098 Chromosome condensatio 72.7 25 0.00055 46.0 11.3 97 885-981 306-417 (1128)
72 PF04826 Arm_2: Armadillo-like 69.3 33 0.00071 40.9 11.0 102 840-941 14-125 (254)
73 KOG2259 Uncharacterized conser 67.4 16 0.00034 47.7 8.1 64 837-903 409-472 (823)
74 COG5034 TNG2 Chromatin remodel 66.6 3.6 7.9E-05 47.7 2.2 49 658-708 218-268 (271)
75 PF14500 MMS19_N: Dos2-interac 66.3 28 0.00061 41.7 9.7 96 845-941 6-112 (262)
76 TIGR02270 conserved hypothetic 64.4 50 0.0011 42.1 11.9 114 841-975 150-263 (410)
77 PF12719 Cnd3: Nuclear condens 62.6 70 0.0015 38.9 12.4 63 880-942 30-95 (298)
78 COG5240 SEC21 Vesicle coat com 61.8 5E+02 0.011 34.3 27.8 78 841-922 104-185 (898)
79 KOG2956 CLIP-associating prote 61.1 60 0.0013 41.4 11.2 74 833-907 324-402 (516)
80 COG1413 FOG: HEAT repeat [Ener 61.0 70 0.0015 39.2 12.2 110 838-966 43-153 (335)
81 KOG0212 Uncharacterized conser 59.8 5.4E+02 0.012 34.0 28.7 141 835-977 81-235 (675)
82 PF12765 Cohesin_HEAT: HEAT re 59.4 9.6 0.00021 32.7 3.0 26 910-935 17-42 (42)
83 KOG1240 Protein kinase contain 58.2 1.5E+02 0.0033 41.9 14.9 146 1201-1388 589-735 (1431)
84 KOG0212 Uncharacterized conser 58.1 1E+02 0.0022 40.2 12.6 143 836-981 334-482 (675)
85 PF12460 MMS19_C: RNAPII trans 56.3 1.3E+02 0.0029 38.3 13.8 122 819-944 254-398 (415)
86 KOG2011 Sister chromatid cohes 56.0 26 0.00056 48.7 7.6 98 884-981 294-401 (1048)
87 PF11707 Npa1: Ribosome 60S bi 55.8 1.3E+02 0.0028 37.3 13.2 148 837-984 55-242 (330)
88 KOG0166 Karyopherin (importin) 55.2 2.5E+02 0.0053 36.9 15.6 239 1150-1415 157-436 (514)
89 cd03572 ENTH_epsin_related ENT 53.8 31 0.00068 36.6 6.3 70 834-903 34-116 (122)
90 COG5116 RPN2 26S proteasome re 53.5 47 0.001 42.9 8.6 116 1248-1422 564-680 (926)
91 KOG1293 Proteins containing ar 53.2 57 0.0012 43.0 9.6 107 873-979 415-533 (678)
92 smart00288 VHS Domain present 52.2 97 0.0021 33.3 9.9 80 876-955 36-129 (133)
93 cd03561 VHS VHS domain family; 50.9 1E+02 0.0022 33.0 9.8 69 876-944 36-116 (133)
94 KOG1059 Vesicle coat complex A 50.2 1.3E+02 0.0028 40.3 12.0 136 1159-1302 194-362 (877)
95 PF00790 VHS: VHS domain; Int 49.3 1.7E+02 0.0037 31.6 11.3 86 857-944 24-122 (140)
96 COG5537 IRR1 Cohesin [Cell div 47.9 1.8E+02 0.0038 38.4 12.4 146 1246-1423 285-438 (740)
97 cd03567 VHS_GGA VHS domain fam 47.8 1.8E+02 0.004 31.6 11.2 80 876-955 37-131 (139)
98 KOG1820 Microtubule-associated 47.8 2.5E+02 0.0055 39.0 14.8 146 833-978 289-442 (815)
99 PF04826 Arm_2: Armadillo-like 46.0 64 0.0014 38.5 8.1 99 840-938 56-161 (254)
100 KOG4653 Uncharacterized conser 45.6 2.2E+02 0.0048 39.1 13.2 83 819-903 830-915 (982)
101 PF14664 RICTOR_N: Rapamycin-i 44.4 86 0.0019 39.6 9.2 121 861-981 6-139 (371)
102 KOG1243 Protein kinase [Genera 44.3 22 0.00048 47.0 4.2 133 837-978 368-514 (690)
103 KOG2149 Uncharacterized conser 44.1 1.1E+02 0.0023 38.6 9.7 65 839-903 59-125 (393)
104 KOG0211 Protein phosphatase 2A 43.9 1.1E+03 0.024 32.9 26.1 407 849-1301 248-660 (759)
105 KOG1973 Chromatin remodeling p 43.3 13 0.00027 44.9 1.7 46 662-709 220-267 (274)
106 KOG0946 ER-Golgi vesicle-tethe 42.0 2.3E+02 0.0049 38.6 12.4 147 1251-1419 38-199 (970)
107 KOG2025 Chromosome condensatio 41.3 1.6E+02 0.0034 39.5 10.8 126 836-975 83-218 (892)
108 smart00638 LPD_N Lipoprotein N 40.8 2.2E+02 0.0048 37.9 12.8 169 1110-1300 361-540 (574)
109 cd03568 VHS_STAM VHS domain fa 39.2 2E+02 0.0044 31.4 10.0 71 876-946 36-116 (144)
110 cd03569 VHS_Hrs_Vps27p VHS dom 39.1 3.9E+02 0.0084 29.2 12.1 82 875-956 39-133 (142)
111 PF12530 DUF3730: Protein of u 38.4 3.8E+02 0.0083 31.5 12.9 125 846-978 9-150 (234)
112 KOG1967 DNA repair/transcripti 37.6 1.1E+02 0.0024 42.0 8.8 108 832-939 903-1023(1030)
113 PF05322 NinE: NINE Protein; 37.0 34 0.00073 31.2 2.9 45 459-504 3-48 (60)
114 PF01347 Vitellogenin_N: Lipop 36.8 95 0.0021 41.6 8.6 155 1124-1300 414-584 (618)
115 PF08389 Xpo1: Exportin 1-like 35.9 44 0.00095 35.4 4.3 68 832-901 76-148 (148)
116 KOG0213 Splicing factor 3b, su 35.5 1.4E+03 0.029 31.6 26.8 87 875-963 715-812 (1172)
117 KOG2160 Armadillo/beta-catenin 35.1 1.7E+02 0.0036 36.4 9.3 103 840-942 126-242 (342)
118 PF08045 CDC14: Cell division 33.4 3.2E+02 0.007 32.8 11.1 74 1239-1312 136-214 (257)
119 PF13251 DUF4042: Domain of un 33.4 65 0.0014 36.6 5.2 53 853-905 1-68 (182)
120 KOG2023 Nuclear transport rece 33.1 98 0.0021 41.0 7.2 85 858-942 639-734 (885)
121 PF08623 TIP120: TATA-binding 33.1 86 0.0019 35.2 6.0 56 921-977 37-92 (169)
122 KOG1248 Uncharacterized conser 30.9 2.5E+02 0.0054 39.9 10.7 108 835-942 782-900 (1176)
123 COG5240 SEC21 Vesicle coat com 30.6 1.2E+02 0.0027 39.4 7.3 98 838-937 487-585 (898)
124 PF14664 RICTOR_N: Rapamycin-i 30.5 1.8E+02 0.0038 36.8 8.9 132 1257-1423 4-145 (371)
125 PF05004 IFRD: Interferon-rela 29.8 4.4E+02 0.0096 32.5 12.0 122 1140-1266 124-258 (309)
126 COG5218 YCG1 Chromosome conden 29.1 7.8E+02 0.017 32.8 13.7 139 830-974 41-194 (885)
127 PF05004 IFRD: Interferon-rela 28.3 5.7E+02 0.012 31.5 12.5 128 839-982 44-184 (309)
128 COG1413 FOG: HEAT repeat [Ener 28.2 3.8E+02 0.0081 32.8 11.2 125 838-978 74-208 (335)
129 smart00249 PHD PHD zinc finger 27.0 27 0.00058 29.3 0.7 34 672-706 12-46 (47)
130 PF08167 RIX1: rRNA processing 26.8 6E+02 0.013 28.3 11.4 71 835-906 22-97 (165)
131 PF11935 DUF3453: Domain of un 26.6 2.5E+02 0.0054 33.2 8.8 63 920-982 2-75 (239)
132 PF00628 PHD: PHD-finger; Int 26.2 23 0.00049 31.2 0.1 37 671-708 11-49 (51)
133 PF10274 ParcG: Parkin co-regu 26.0 2.6E+02 0.0056 32.0 8.2 84 835-918 35-127 (183)
134 PRK10947 global DNA-binding tr 25.9 1.5E+02 0.0032 32.3 6.0 58 1728-1787 56-115 (135)
135 PF10521 DUF2454: Protein of u 25.6 5.1E+02 0.011 31.4 11.4 75 828-902 109-199 (282)
136 PRK10328 DNA binding protein, 25.6 1.5E+02 0.0032 32.2 5.9 62 1724-1787 52-115 (134)
137 PF11640 TAN: Telomere-length 25.0 2.9E+02 0.0063 30.4 8.4 38 839-876 5-44 (155)
138 KOG1062 Vesicle coat complex A 23.9 2.7E+02 0.0058 38.1 8.8 54 1239-1297 520-573 (866)
139 PF05997 Nop52: Nucleolar prot 23.9 3.8E+02 0.0082 31.4 9.4 73 916-1017 5-77 (217)
140 PF11099 M11L: Apoptosis regul 23.7 3E+02 0.0066 30.8 7.9 76 860-939 47-132 (167)
141 cd03565 VHS_Tom1 VHS domain fa 23.6 5.1E+02 0.011 28.2 9.7 81 876-956 37-134 (141)
142 PF12460 MMS19_C: RNAPII trans 23.5 4.2E+02 0.009 33.9 10.6 88 834-921 319-412 (415)
143 KOG1078 Vesicle coat complex C 22.8 1.6E+02 0.0035 39.8 6.7 22 610-631 293-314 (865)
144 KOG1967 DNA repair/transcripti 22.2 1.4E+03 0.03 32.2 14.8 144 836-980 865-1024(1030)
145 PF12074 DUF3554: Domain of un 21.9 1.5E+03 0.032 28.0 14.8 41 1390-1430 208-250 (339)
146 cd00197 VHS_ENTH_ANTH VHS, ENT 21.5 6E+02 0.013 26.2 9.5 78 857-936 19-111 (115)
147 KOG1517 Guanine nucleotide bin 21.3 2.5E+02 0.0055 39.3 8.0 88 841-942 645-734 (1387)
148 KOG0825 PHD Zn-finger protein 21.1 46 0.001 44.2 1.4 44 666-709 221-265 (1134)
149 PF06371 Drf_GBD: Diaphanous G 20.1 1.8E+02 0.004 32.3 5.8 70 834-903 107-184 (187)
No 1
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-240 Score=2244.41 Aligned_cols=1559 Identities=31% Similarity=0.439 Sum_probs=1258.8
Q ss_pred CCCCCCCCCCCccccc-ccccccccccCCCCCCCCCcccCCCCCCc-cccccccccchhhccchHHHHHhhHHHHHHhhh
Q 047845 10 SGSGSGLGSTGQWGIG-FSNTIHSEVAPCLPLPSLPVFCGATDPNL-RLFDEASAGVSYRLLNRTEILTQSSRIADLLRV 87 (1801)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (1801)
.|.+|+++...-.++| ..|++-+|..+.+|+|++|++||..++.+ ..||+..... ...|+++-.++.++|+|+..
T Consensus 7 ~~~~s~~~~e~f~~v~~~~~~r~~~~l~~~pls~l~p~~~l~~~~l~~~~d~~~~~s---~~~~se~~~i~q~~~n~l~~ 83 (1692)
T KOG1020|consen 7 DRGESSETLESFSRVNKPETLRIIEALEYLPLSSLVPTDGLAQNVLAPSFDSLERPS---SQDRSEADDISQRNANMLHP 83 (1692)
T ss_pred cccccccchhhhcccCCCCcccccccccCCcccccccchhhhhhcccccccccCCcc---cccchhhhHHHHHHHhhcCc
Confidence 3445555444455588 89999999999999999999999999965 8999988877 48999999999999999999
Q ss_pred cCcccccccccCCCCCCCCCCchhhHHHHhhcCccccccccCCCCcccc--c-------------cccCC---Ccccccc
Q 047845 88 TDVSYLNLRDEAKPDPYSDMEPLELHNQVLQYNAEAFEYVTPGKQSHIK--E-------------QVSGG---ESFERKD 149 (1801)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~---~~~~~~~ 149 (1801)
|++.+++++.|+......+.+|...|+-++.++|..++|++|++|.-++ + .++.+ ..+..++
T Consensus 84 ~~~~~~~~~~~~~~~d~~s~~psn~~~L~~~~~p~~v~~v~p~~t~~p~~~ne~~~s~ln~~i~s~~s~~~~m~~st~~~ 163 (1692)
T KOG1020|consen 84 TNKTTLDLENEAEKEDLNSAEPSNPLDLKLTSIPNIVDYVSPNFTQGPLVCNESPLSELNDLIQSLISTHVGMSRSTNKP 163 (1692)
T ss_pred hhhhhhhhhhhhhhhhhcccCCCccccccccCCcccccccCCCCCccchhcccChHHHHHHHHHHhccchhhhcccccCC
Confidence 9999999999999999999999999999999999999999888865522 1 11111 1122222
Q ss_pred --------CCCccc-----ccCCCCC----ccC--CCccC-----------------CCCCcccccccCCCCCCCCCCCC
Q 047845 150 --------REPSIL-----GASGLQR----DYI--GDVST-----------------SSSRKPKIKKKGGDNISSSAQPD 193 (1801)
Q Consensus 150 --------~~~~~~-----~~~~~~~----~~~--~~~~~-----------------~~~~k~k~~~~~~~~~~~~~~~~ 193 (1801)
++.+-+ +..+.|+ ... .|.+| ..++++|-+|+..++... .+|+
T Consensus 164 ~~~s~~~s~~~~r~pel~~~~~~~~~sc~~~~~n~~N~sP~~~ka~~s~~~~~~~~~~~e~~e~d~K~r~~~~~e-~qp~ 242 (1692)
T KOG1020|consen 164 DAGSIKTSIEKSRNPELLRSLESVQPSCQRVSENTDNSSPKKSKASDSTPTKKTDEKLAEQYEKDLKRRKPDDSE-IQPD 242 (1692)
T ss_pred CcCcccccccccCChhhcCCCCcCChhHHHhhhhccccCCccccccCCCccccchhhhhhhhhccccccCccccc-cCcc
Confidence 111111 1111111 011 12222 111122222223333332 6677
Q ss_pred h-----hHHHHHHHHHHHHHHHHhhcCCC-CCCCccCccccccCChHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHH
Q 047845 194 P-----IEVQDATIMNFCEMLEDFCGRAE-IPTDDQNDTELLSLPVADVRIVVNEIMSLRAKKLLHLVSVDILVRLLRVL 267 (1801)
Q Consensus 194 ~-----~~~~~~~~~~~~~~l~~i~~~~~-~~~~d~~~~~~~~l~~~~l~~l~~e~~~l~~~~~l~~Ip~d~L~rLl~ll 267 (1801)
| .-+...++++||..+|+|++..| .++.|+++++|+.|+.+.|++|..+.++++.+|+++.||.|+|+||++++
T Consensus 243 ~~~~~~~l~d~~tf~~f~~~ieni~~~le~s~~~d~e~~~~~~i~~~~l~~L~~~~aki~~~~ald~l~~dkl~~Ll~~l 322 (1692)
T KOG1020|consen 243 QDVLEEELLDSSTFQQFCAEIENIEDWLENSPFFDREIDDKLVISSHCLEKLQMELAKIRANGALDKLPIDKLLRLLNVL 322 (1692)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCccccccccccHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHHHH
Confidence 7 33445899999999999998776 56677778899999999999999999999999999999999999999999
Q ss_pred HHHHHh---h-cCCCcccccC-CChhHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHHhhc-cccccC
Q 047845 268 DHQIHR---A-EGLSVDEREH-LDSDRVSMVFCALESIHAALAVMAHDHMPKQLYKEEIIERVLEFSRHQITD-VMSAYD 341 (1801)
Q Consensus 268 e~~I~~---a-~~l~~~~~e~-~~~~~~~~v~~al~a~~~aL~Imt~~~mpKqLy~Ed~Ie~~i~~~k~~l~~-ii~~~d 341 (1801)
++||++ + .+...+..+. ++++.+++|+.|++||+++++||++ +||||||.||+|++|++|+++++++ ++|+||
T Consensus 323 ~~nI~~~l~~~~~~~~~~ed~l~dd~~le~vl~asdavl~~inim~s-~m~kql~~Ed~I~ril~ft~~~l~~ti~pa~D 401 (1692)
T KOG1020|consen 323 DRNIKDELPRLLNSKIDLEDSLLDDSMLERVLKASDAVLFIINIMSS-NMPKQLYIEDVIERILNFTRFLLESTIYPAID 401 (1692)
T ss_pred HHHHHHhhhhhhcccccchhhhhccHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 999993 2 2333333333 6778889999999999999999999 9999999999999999999999999 567999
Q ss_pred hhhhhhcccccccccccCchhhhhhhcchhhhhhhhhccccccccccccchhhHHHHHHHHHHHHHhHHHHhccccCchh
Q 047845 342 PSYRALHKTSESAALEVDEDEEVDADLGSASKRRRTMKNVKVKRSAFNRVSGAVNSILQKLCTILGLLKDLLLIERLSDS 421 (1801)
Q Consensus 342 p~~~~~~~p~~~~~~~~~~~e~~~~~~g~~~k~rk~~~~~~~kk~~~~~~~~~v~~l~~kl~~~l~lLa~Ll~~~~LsDt 421 (1801)
|.|+....+. + .++++|+ +...+| .+.+..+|.++++.++++..++..+.++|+
T Consensus 402 piy~s~~~~~-----------------~-ts~~k~~-~~~~~~-------~r~~~~ly~kv~~~v~~~~~lv~~~~~~dt 455 (1692)
T KOG1020|consen 402 PIYRSKSSDA-----------------R-TSFRKKL-KLLPKK-------IRNGPFLYDKVAEEVTLLLVLVESDLLTDT 455 (1692)
T ss_pred chhhcccCCc-----------------c-hHHHHHH-hhhhHH-------hcchhHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9998753221 1 2222222 122221 134568999999999999999999999999
Q ss_pred HHHHHHhhhcceEEecChhhHHHHHHHHHHHHHhcchhhHhHHHHHHHHhcccCCcCcccccccccCCcCCCchHHHHHH
Q 047845 422 CILQLVKTSFTTFLVDNVQLLQLKAIGLLSAIFYSYTQHRTYVIDEILLLLWKLPSTKRALRTYHLPDEEQRQIQMVTAL 501 (1801)
Q Consensus 422 ~I~~L~~~~~~~fFVeNv~~Lql~Am~LL~~IF~~yp~qR~~IidEILsSL~KLP~~Krs~R~fkL~dg~~~~IQ~vTAL 501 (1801)
.|+++.+++.+||||+|++.||.+|+.|+++||++||.||.+||+|+|+|++|||++||..|.|||++++ ++|||+|||
T Consensus 456 ~v~~~~s~~~tpffv~N~~slqi~~~~Lvs~ifs~yd~~R~siiee~lts~~rLPtsk~~lr~y~l~n~~-g~IqmvTaL 534 (1692)
T KOG1020|consen 456 DVHAVSSIAKTPFFVNNSSSLQISKAILVSTIFSRYDKQRGSIIEELLTSIERLPTSKRQLRNYRLSNQD-GSIQMVTAL 534 (1692)
T ss_pred cccccchhccccccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHhhCchhhhhhhccccCCCC-CcEEehHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 579999999
Q ss_pred HHHHHHhccccchhhhhccCCCcccccccCCCCCccchhhhhhhHhHHHHHHHHHhccccCCCchhhHHHHHHHHHHHHh
Q 047845 502 LIQLVHSSANLPEALRKATSGSTILEVQIDSSYPTKCHEAATDTCCLFWTRVLQRFTSVKAQDASELKVMMENLVMDLLT 581 (1801)
Q Consensus 502 lmqLVQss~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~a~~~~~~f~~~~l~k~~stKs~d~~dyR~llenFVeDLLt 581 (1801)
++|||||+..+|...+...+++.......+..+..++|+.|.+++++||++||.||++ | +++++||+||||||||||+
T Consensus 535 fiqLiq~~~ilp~s~~~a~k~~~~~~~~~~~~~l~k~~e~a~~i~~~fl~~fL~rc~s-~-~~e~d~r~LfeNfvqDLLs 612 (1692)
T KOG1020|consen 535 FIQLIQSETILPYSFCDANKDEEALNSKLQENELTKSYEFAFRIANHFLTTFLERCFS-K-QGEEDYRILFENFVQDLLS 612 (1692)
T ss_pred HHHHHHHhhcCchhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-CChhHHHHHHHHHHHHHHH
Confidence 9999999999998876655544333444445567899999999999999999999987 4 4556999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcCCCCCCCCcc
Q 047845 582 TLNLPEYPASAPILEVLCVLLLQNAGPKSKDVSARSMAIDLLGTIAARLKQEAVLCGRERFWMLQELVREDSSDQSYPKD 661 (1801)
Q Consensus 582 ~L~~PEWPAAElLL~~L~~~Lv~~~~~ks~d~~ar~~ALdlLG~IaA~L~~d~v~~s~~~~~~l~~l~~~~~~~~~~~~~ 661 (1801)
+|++|||||+|+||++||++||+++++|++++++|+|||||||+||||||+|.+.+ + |.. .+.+.
T Consensus 613 ~ln~PEWPatE~ILs~Lg~~Lv~~~s~ks~~~sir~asLdlLG~IaarLrkd~v~s---~---l~~----g~v~~----- 677 (1692)
T KOG1020|consen 613 ALNLPEWPATELILSLLGKLLVHNFSNKSVDVSIRTASLDLLGTIAARLRKDAVLS---K---LEQ----GSVDR----- 677 (1692)
T ss_pred HccCCcCccHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---Hhh----ccchh-----
Confidence 99999999999999999999999999999999999999999999999999998864 1 100 11111
Q ss_pred ccccccccccchhhhhccccccccccccccccccCCCCCCcchh-hhhhhhhHHHHhhhhcccCCCCCCccCCCCCCCCC
Q 047845 662 LCCVCLDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQ-LCLCRNQLLVLQSYCKSHCKGDINKSHSRSESNPE 740 (1801)
Q Consensus 662 l~~~~l~~~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~-~c~~~~~l~~lq~y~~~~~~~~~k~~~~~~~~~s~ 740 (1801)
+.+.....|++. .|.+.++|+.+..++.......+.-.... +-
T Consensus 678 --------------------------------~~~~~s~~~~~~k~~~l~~~Lldfl~~~~~~~~~~~v~~~~f----yi 721 (1692)
T KOG1020|consen 678 --------------------------------ELDQDSEEKHNIKLIVLQKTLLDFLKSNTEETALSEVYACHF----YI 721 (1692)
T ss_pred --------------------------------hhhhcccccccchhhhhHHHHHHHHHHhhhccchhhHHHhhH----HH
Confidence 011122345554 66666677666655442211110000000 00
Q ss_pred Cch-hhhHHHHHHHHHHHHHHhhhcchhhhhhHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhhhhc-ccccccccchhh
Q 047845 741 TSD-TITKLEIVQQMLLNYLQDAVSADEMNLFVRWFYVCLWYKDDPEAQQKSMYYLARLKSKEIVRE-SGTISLSLTRDT 818 (1801)
Q Consensus 741 ~~~-~~~~~~~lq~~ll~yl~~~~~~d~~~~~~r~f~~~~w~~d~~~~~~k~~y~~~~l~~~~i~~~-s~~~~~~ls~d~ 818 (1801)
... ...+++..+. .++..+.++++..+. ||+.+.||+.+...+.++.|++..++.+...+. .+.....++++.
T Consensus 722 ~~w~~d~~le~~~~--~~~~kd~~s~~~~~~---~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~ 796 (1692)
T KOG1020|consen 722 AQWYRDTRLETILI--MEENKDVDSNEGTHH---WFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDD 796 (1692)
T ss_pred HhHHHHHHHHHHHH--HHhccCccccccchh---HHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchh
Confidence 000 0011122222 222223444444433 999999999999999999999999988753332 334446789999
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHH
Q 047845 819 VKKITLALGQNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAAL 898 (1801)
Q Consensus 819 ~~~i~~~l~~~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAl 898 (1801)
+.+|+.+||+.|+|+++||+||++|+..|++++|++||||||||++|+|+||.||.+|+||.+|++|++|+|+|||||||
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAal 876 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAAL 876 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-HHHH--HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHH
Q 047845 899 ELLAG-ILLH--ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFY 975 (1801)
Q Consensus 899 dLIGk-I~~~--L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~ 975 (1801)
||||| |+++ +..|||++|++||.||||+||||||||+||||.++|+|+++++||+|||+||+|||++|+|||++||+
T Consensus 877 dLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 877 DLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred HHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 99999 8877 99999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred hhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcC------CChhhHHHHHHHhhhcccCcchhhhhCCCcchhhH
Q 047845 976 EFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGL------PNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLAS 1049 (1801)
Q Consensus 976 elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~------~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~ 1049 (1801)
++||+|+++. .. ..+.++++..+++++... ...+++..++|..+. . ....+.++...+.
T Consensus 957 klWF~p~~~~-~d--------~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~----~--~~~~~~~~v~~~~ 1021 (1692)
T KOG1020|consen 957 KLWFTPVPEV-ND--------QPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLL----K--TMKESVKPVALAK 1021 (1692)
T ss_pred HHhccCCCcc-cc--------cHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh----h--hhhhhhhHHHHhh
Confidence 9999999864 22 234556666666655421 133455555554321 1 1223444556677
Q ss_pred HHHHHHHHHHHHHHHHHhhc--ccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccChH-----
Q 047845 1050 VRRRCELMCKCLLERILQVE--EMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDNR----- 1122 (1801)
Q Consensus 1050 v~~~c~~ivd~LVe~ll~le--e~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~~----- 1122 (1801)
+..+|+.+++||++.+.+++ ++..++.+++.++|++||++||+++|.||++ +|+++|+|||++.+++.
T Consensus 1022 v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~-----khv~tL~PYL~s~~~t~~~~~f 1096 (1692)
T KOG1020|consen 1022 VTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTK-----KHVITLQPYLTSKASTIEEAQF 1096 (1692)
T ss_pred cchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccH-----HHHHHhhhHHhccccchHHHHH
Confidence 88899999999999999997 5656666778999999999999999999997 69999999999986553
Q ss_pred --HHHHhhcceeeeccCCChhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCC
Q 047845 1123 --VVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNP 1200 (1801)
Q Consensus 1123 --~~~~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~ 1200 (1801)
+++.+|++|+|+++++|++|++.||++|+++|.|+|. .+|.+||+|||+|+++.+++++.+++|++.|++.|..++.
T Consensus 1097 l~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~-a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~ 1175 (1692)
T KOG1020|consen 1097 LYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM-ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKS 1175 (1692)
T ss_pred HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999985 7888899999999999999999999999999999876432
Q ss_pred ---C-----ChhhhhhHHHHHHHHHhhccccccccccCcc------chhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 047845 1201 ---D-----SKQVVGRSLFCLGLLIRYGSSLLTTSYEKNI------DIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIA 1266 (1801)
Q Consensus 1201 ---d-----~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~------~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s 1266 (1801)
+ +.|+++|+||++|+|+|||+|......+++. -.++++.+|.+|....+.++|++||+|||++|++
T Consensus 1176 s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~ 1255 (1692)
T KOG1020|consen 1176 SNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQ 1255 (1692)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 2 4789999999999999999998765555552 1234555555555557899999999999999999
Q ss_pred CcchhchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccc-cccccCCCcchHH
Q 047845 1267 RPEHMLEKDIGKILEATLADSS-HIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSV-PVAAGAGDTNICG 1344 (1801)
Q Consensus 1267 ~P~l~~~~~v~~i~~~~l~~~~-~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~-~v~~g~~Dsgv~s 1344 (1801)
||+||+++++.++|+.+|++.+ +...|+++|+|+++||++||+++......|.+.+ +.+++++| +|.+|++++|+||
T Consensus 1256 hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~-k~edlkem~~v~sg~~s~~~~~ 1334 (1692)
T KOG1020|consen 1256 HPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSN-KSEDLKEMLDVSSGMGSSDGVS 1334 (1692)
T ss_pred CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhh-hHHHHHhhcccccccccccchH
Confidence 9999999999999999999875 4445999999999999999999977666443444 44444554 8999999999999
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCcccceeeecccCcchhhHHHHHHHHHHHHhhChhhhhhh
Q 047845 1345 GIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFFESR 1424 (1801)
Q Consensus 1345 ~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPtLIALeTdp~~~Ir~~A~~lL~~L~eKyes~v~~~ 1424 (1801)
+|||+||++||++|++.+.++|++|+++|++||+||||||.+||||||||+|||.+++|++|+.+|++||+||+|||+++
T Consensus 1335 ~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk 1414 (1692)
T KOG1020|consen 1335 AIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSK 1414 (1692)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCCcccchhhhhhcccccCCCCCCCchHHhhhhhhhhHHhhccChhhHHHHHHHHHhcccCCC
Q 047845 1425 LGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTMKGKSDGSSLTQARLGVSQIYKLIRGNRNSRNKFMSSIVRKFDNPS 1504 (1801)
Q Consensus 1425 ~~~GI~~Af~yq~~i~~~~~~~~~~~~qsk~~~~~~g~~~~~~~~~a~~~ls~LY~llr~~r~~R~kFL~sLlk~Fd~~~ 1504 (1801)
+++|++++|.||+.+.....+ -.+|++.....+.+ +.+++|+++|+||++|++|+.++++.||++
T Consensus 1415 ~~~G~~lsf~lq~~~~~~~~~------------~~~~fr~~d~ss~t--l~s~ly~~~r~nk~~rr~fl~si~~lfd~~- 1479 (1692)
T KOG1020|consen 1415 LSQGVQLSFKLQQHIDEKTYK------------PVRGFRLPDHSSST--LKSNLYKSIRGNKQIRRSFLQSILDLFDDP- 1479 (1692)
T ss_pred HHhhhHHHHHHHHHHHHHhhc------------ccccccCcccchhH--HHhccHHHHhhhHHHHHHHHHHHHHhccCC-
Confidence 999999999999998653321 12333322222333 579999999999999999999999999987
Q ss_pred CCCCCchhHHHHHHhhccCCCCCCchhHHHHHHhhHHHhcchhhHHHHHHHHHHHhhhhhhhcccccCCCcccccccccc
Q 047845 1505 CSDLVIPFLMYCTEVLALLPFSSPDEPLYLIYTINRVIQVRAGALEANMKAMSTHLLQRDAQKTTYENGMVDQESAEPVF 1584 (1801)
Q Consensus 1505 ~~~~~l~~l~FlaeNLA~fpY~t~dE~L~vI~~Id~iVS~~g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1584 (1801)
+.+.+.|+.|||+|||+|||+++|||||+||+||++++..|++|+++||+.+.+- .+ +|+++
T Consensus 1480 -~ks~vs~~~yiadnLA~fPyvsqdEPLyl~~tID~~la~~g~~ll~~~K~~l~~~----------~e-------~D~~~ 1541 (1692)
T KOG1020|consen 1480 -NKSVVSFLLYIADNLANFPYVSQDEPLYLMHTIDLTLARLGEVLLDEFKELLHKD----------SE-------GDSDS 1541 (1692)
T ss_pred -CcchhhhHHHHHhhhccCCcccccchHHHHHHHHHHHHHhhHHHHHHHHHHhccc----------cc-------cCCCC
Confidence 3447999999999999999999999999999999999999999999999987220 11 14444
Q ss_pred cccccccccCCcCCCCCCCccccccccccCCCCCCCCCCCcccccCCCchhhhhhcccCCCCCCCCcchhHHHHHHHHHH
Q 047845 1585 NHMTSMDLNGTIKEEPAAQPIFYHMSSIDLNGTVQPEPNDQPLLHRMPPLEAKVHVMSSGEPRDIPKDDLQKVQVDCISA 1664 (1801)
Q Consensus 1585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~s 1664 (1801)
.+..+||.+ ..+.++|+ +-.++.++
T Consensus 1542 ~~~~~~d~~--------------------------------s~~~~~p~-----------------------~~~~~l~~ 1566 (1692)
T KOG1020|consen 1542 DDDNMMDIN--------------------------------SVMKCLPE-----------------------LIFLILSS 1566 (1692)
T ss_pred cccchhhhH--------------------------------HHhhhhhH-----------------------HHHHHHhc
Confidence 433333321 22333332 44566799
Q ss_pred HHHHHHHHHHHHHHHHhCCChhhhcccCCCCCCCCCCc--cccCCCCCCcchhhhhcC---------CcHHHHHHHHHHH
Q 047845 1665 TALQLLLKLKRYLKIVYGLNDARCQAYSPSEPQKPGEP--LTKQNIPFDISDTRVALP---------STYEDLMQKYQEF 1733 (1801)
Q Consensus 1665 ~~~~lLL~LK~hLk~~Yglsd~k~~~Yspse~~K~~e~--~~r~~~~f~~~~~~~~l~---------~~~~~~~~~y~~F 1733 (1801)
++|++|++||+|||.+||++|+|++.|+|+|..|+||+ .++....|.|..+...+. +-++.+..+|.+|
T Consensus 1567 q~~slll~lk~~lk~l~~~~dski~~y~pse~~klydka~~r~~~~~f~P~~~~d~~~~~~~~~~~~e~k~~l~~~y~~f 1646 (1692)
T KOG1020|consen 1567 QNLSLLLYLKDHLKDLYGFSDSKIHLYSPSEDLKLYDKAVTRKLKNDFKPKTTLDILKFSFAELILIEEKRSLGKQYTDF 1646 (1692)
T ss_pred cchhhHHHHHHHHHHHhccccccccccCCchhhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 455667899998877663 2367899999999
Q ss_pred HHHhhh---cccchhHHhhhcccCCCCCCCCCCCCccc
Q 047845 1734 KNALKE---DTVDYAVYTANIKRKRPAPRKGVRYGRII 1768 (1801)
Q Consensus 1734 k~lm~~---d~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 1768 (1801)
+++|.+ ++..+.+.+.++.++.+|.+..++++.++
T Consensus 1647 r~~~~~ld~~~~~e~s~~~t~~n~~~~s~~~~~s~~~~ 1684 (1692)
T KOG1020|consen 1647 RKLMLDLDEEEEGEVSASTTAANDAITSLLDGGSPSNN 1684 (1692)
T ss_pred HHHHHhcCCCCcCCcccchhhhhhhhhhcccCCCCccc
Confidence 999995 33345566679999999999988888655
No 2
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=100.00 E-value=6.3e-44 Score=395.53 Aligned_cols=181 Identities=38% Similarity=0.698 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCcccceeeecccCcchhhHHHHHHHHHHHHhhChhhh
Q 047845 1342 ICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAFF 1421 (1801)
Q Consensus 1342 v~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPtLIALeTdp~~~Ir~~A~~lL~~L~eKyes~v 1421 (1801)
||++|+||||++||++|++++..+|++|+++|++|+|||||||++||||||||+|||++.||++|+.+|+++|+|||+|+
T Consensus 1 v~s~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 1 VCSALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred CcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhcCCCCcccchhhhhhcccccCCCCCCCchHHhhhhhhhhHHhhccChhhHHHHHHHHHhccc
Q 047845 1422 ESRLGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTMKGKSDGSSLTQARLGVSQIYKLIRGNRNSRNKFMSSIVRKFD 1501 (1801)
Q Consensus 1422 ~~~~~~GI~~Af~yq~~i~~~~~~~~~~~~qsk~~~~~~g~~~~~~~~~a~~~ls~LY~llr~~r~~R~kFL~sLlk~Fd 1501 (1801)
+++|++||++||+||+++.++..+. ..|. ...++++||++++++|++|++||++|+|.|+
T Consensus 81 ~~~~~~gi~~af~~~~~l~~~~~~~------------~~~~--------~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~ 140 (187)
T PF12830_consen 81 ESRYSEGIRLAFDYQRRLSSDSRGA------------RRGP--------PSAFLSRLYSLLRSNRKSRRKFLKSLLKQFD 140 (187)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccc------------cccc--------chHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 9999999999999999998866431 1111 2347899999999999999999999999999
Q ss_pred CCC------CCCCCchhHHHHHHhhccCCCCCCchhHHHHHHhhHHH
Q 047845 1502 NPS------CSDLVIPFLMYCTEVLALLPFSSPDEPLYLIYTINRVI 1542 (1801)
Q Consensus 1502 ~~~------~~~~~l~~l~FlaeNLA~fpY~t~dE~L~vI~~Id~iV 1542 (1801)
... ..+.++.|++|+|||||+|||+++|||+++|++||+||
T Consensus 141 ~~~~~~~~~~~~~~l~~~~Fla~nLA~l~y~~~~E~l~vi~~i~~iV 187 (187)
T PF12830_consen 141 FDLTKLSSESSPSDLDFLLFLAENLATLPYQTQDEVLYVIHHIDRIV 187 (187)
T ss_pred hhccccccccchhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhhC
Confidence 754 35678999999999999999999999999999999987
No 3
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=99.63 E-value=1.7e-13 Score=170.55 Aligned_cols=547 Identities=17% Similarity=0.194 Sum_probs=324.2
Q ss_pred hhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH
Q 047845 876 KRVQLAVEGRFC-DSAISVREAALELLAGILLH-----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST 949 (1801)
Q Consensus 876 ~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~-----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~ 949 (1801)
..|...|.+|+. |+.++||.||..++-.++++ +.+...-.+-+-++|.-|+|||.+..-|.+.....|..-.+.
T Consensus 575 ~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~ 654 (1529)
T KOG0413|consen 575 KDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLS 654 (1529)
T ss_pred HHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhh
Confidence 346677788888 99999999999999887766 233335567788999999999999999999999988844333
Q ss_pred HH-HHHhhcccCCCchhHHHHHHHHHHhhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcCCCh-hhHHHHHHHh
Q 047845 950 TA-CIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLPNH-QLLVTVIKRN 1027 (1801)
Q Consensus 950 ~i-~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~~~~-~~lv~~~k~~ 1027 (1801)
.. ...++.=++|-|..|.+-|++.+. -|.+|...+ ++ ..+|.+.+.+....++ +-+..+++
T Consensus 655 ~~wl~~li~~~~d~es~v~e~a~~~i~-k~l~p~~~~-------~~-------dlaW~LL~~i~~~~~~s~yl~~~~h-- 717 (1529)
T KOG0413|consen 655 SKWLHTLISMLNDTESDVTEHARKLIM-KVLTPLLEN-------SS-------DLAWTLLDTIESVTNHSQYLMSTLH-- 717 (1529)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH-HHHhhhccc-------CC-------chHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33 466778889999999999999765 477773211 11 1467776665432222 11221111
Q ss_pred hhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhccccCccCCCCCccch
Q 047845 1028 LALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQF 1107 (1801)
Q Consensus 1028 l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~ 1107 (1801)
+|... +++-.+.++.+.+..+. + ..-+.|..+...|.-.|++ +|
T Consensus 718 ---~w~~~-------------------~k~~~t~~d~~~~hsG~--E----~~~~aWm~~s~~~~q~~~~--------d~ 761 (1529)
T KOG0413|consen 718 ---DWVRE-------------------KKVKRTVMDSMKQHSGS--E----KLDGAWMVFSQLCVQFEQV--------DF 761 (1529)
T ss_pred ---HHHHH-------------------HhcchhhhhhhhcccCc--c----cCcchHHHHHHHHhccccc--------ce
Confidence 33211 12223345555554332 1 1223333444444333331 34
Q ss_pred hhhhccccccccChHHHHHhhcceee----eccCCChhHHHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHhhccCCc
Q 047845 1108 VITLQPYLKSQVDNRVVAKFLESVIF----IIDALPSSVIEELEQDLKHMIVRHSF---LTVVHACIKCLCSVSKISGKG 1180 (1801)
Q Consensus 1108 i~~L~PYL~~~~~~~~~~~il~~Vv~----i~~~Lp~~fl~eLe~dL~~lI~k~~~---~~vv~acv~CL~~l~~~~~~~ 1180 (1801)
...++.+-+....+. ..++|.+|+. |-++|+.+....++..+.-.-.+.+. ..++...+.-+..++-+-...
T Consensus 762 S~~~~s~~~~s~~~N-~~~~L~hI~~~i~~i~~~l~s~~vd~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~ 840 (1529)
T KOG0413|consen 762 SIETFSRVDLSRESN-LVQYLIHIIENIKKIDDDLKSDLVDTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEF 840 (1529)
T ss_pred eeecccccccchhhh-HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccC
Confidence 444444443322121 2334444443 44679999999998888655443331 122222222222332222211
Q ss_pred h-hHHHHHHHHHHHhh-------hcCCC--CChhhhhhHH---HHHH--HHHhhccc-------------cccccccC-c
Q 047845 1181 L-STVEHLILVFFKYL-------DSHNP--DSKQVVGRSL---FCLG--LLIRYGSS-------------LLTTSYEK-N 1231 (1801)
Q Consensus 1181 ~-~~v~~~i~~~~~~L-------~~~~~--d~~~~l~R~L---~~lG--ll~Ry~~~-------------~~~~~~~k-~ 1231 (1801)
. .-++.+.+.|...+ +.+.. .+...+-|+| |++| .....|+. ...|+... |
T Consensus 841 ~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s~~~~~~l~~~y~v~~~~~~ql~P~ar~~K~~~lLv~s~~~gssDa~h 920 (1529)
T KOG0413|consen 841 SDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNSESQERLLCTAYNVAFSYSPQLVPHARLGKTLSLLVNSTENGSSDAPH 920 (1529)
T ss_pred chHHHhhHHHhccceehhHHhhhhhhHHHhhcchhHHHHHHHHhhccccccceeccchhccceeeeeeeeeccCCCCCCC
Confidence 1 11223333332211 11100 1111233433 3333 11122221 01232221 1
Q ss_pred cchhhhHH-------HHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 047845 1232 IDIVSNLN-------LFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYL 1304 (1801)
Q Consensus 1232 ~~v~~~l~-------lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL 1304 (1801)
- -...++ --+--..+....||..++-.||++|.+|-+|.-+ ...+|-++|+-.....++
T Consensus 921 t-p~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTlakmcLah~~LaKr--~~P~lvkeLe~~~~~aiR----------- 986 (1529)
T KOG0413|consen 921 T-PPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLAKMCLAHDRLAKR--LMPMLVKELEYNTAHAIR----------- 986 (1529)
T ss_pred C-CccchhhCcccCCCccccccccchHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhhhHHHHh-----------
Confidence 1 001111 0000012345679999999999999999998765 567777777532211110
Q ss_pred HHHhhhcccccCCCCcccccccCCccccccccCCCcchHH---HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCc
Q 047845 1305 LDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICG---GIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGL 1381 (1801)
Q Consensus 1305 ~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s---~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGL 1381 (1801)
+ + +.--|+| +|+ +.+.+|++.|..+.-++..-||.+++-+|.-+++.|+
T Consensus 987 ---------------------n---N--iV~am~D--~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~ 1038 (1529)
T KOG0413|consen 987 ---------------------N---N--IVLAMGD--ICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI 1038 (1529)
T ss_pred ---------------------c---c--eeeeehh--hHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh
Confidence 1 1 1234676 886 4899999999999999999999999999999999999
Q ss_pred cCCCc-ccceeeecccCcchhhHHHHHHHHHH-HHhhChhhhhhhhhhHHHHHHHHHHHhcCCCCcccchhhhhhccccc
Q 047845 1382 VHPIT-CVPYLIALETDPQEVNSKLAHHLLMN-MNEKYPAFFESRLGDGLQMSFVFIQSIGGGSSECRNQKFQSKAAGTM 1459 (1801)
Q Consensus 1382 VhP~~-cvPtLIALeTdp~~~Ir~~A~~lL~~-L~eKyes~v~~~~~~GI~~Af~yq~~i~~~~~~~~~~~~qsk~~~~~ 1459 (1801)
|.|.. .+-.++--.-|.++.||+.|.-++.+ |..+-|-|+...++++|-.--+|+++..-+.+. |+ -
T Consensus 1039 vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~~~h~g~~n~~------qs-----~ 1107 (1529)
T KOG0413|consen 1039 VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQARRHVGVGNHD------QS-----D 1107 (1529)
T ss_pred hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhCCCCCc------cc-----c
Confidence 99966 44455555568999999999999976 677889999999999998888887765322110 11 0
Q ss_pred CCCCCCCchHHhhhhhhhhHHhhcc---ChhhHHHHHHHHHhcccCCCCCCCCchhHHHHHHhhccCCCCCCchhHHHHH
Q 047845 1460 KGKSDGSSLTQARLGVSQIYKLIRG---NRNSRNKFMSSIVRKFDNPSCSDLVIPFLMYCTEVLALLPFSSPDEPLYLIY 1536 (1801)
Q Consensus 1460 ~g~~~~~~~~~a~~~ls~LY~llr~---~r~~R~kFL~sLlk~Fd~~~~~~~~l~~l~FlaeNLA~fpY~t~dE~L~vI~ 1536 (1801)
+| ..+|+|-.+ -|..|.+++..|+++|++.... --++..|+++||.| .|--|-
T Consensus 1108 r~--------------~~~fSi~G~d~~aR~~Rm~IY~fLL~~~~de~rf---~v~~kiC~~Ila~~----~dG~l~--- 1163 (1529)
T KOG0413|consen 1108 RG--------------QVDFSIGGGDPLARPSRMAIYTFLLDSLDDESRF---DVKMKICQRILAPI----VDGELD--- 1163 (1529)
T ss_pred hh--------------ceeEeecCCCcccchhhhhHHHHHHHhcChHHHH---HHHHHHHHHHHHHH----hcCcCC---
Confidence 11 123444321 2678999999999999987654 24678899999987 222221
Q ss_pred HhhHHHhcchhhHHHHHHHHH
Q 047845 1537 TINRVIQVRAGALEANMKAMS 1557 (1801)
Q Consensus 1537 ~Id~iVS~~g~~ll~~~~~~~ 1557 (1801)
+-..+|+.+++.-+..+
T Consensus 1164 ----~~D~~~q~lL~Daf~IL 1180 (1529)
T KOG0413|consen 1164 ----FSDYNVQCLLDDAFLIL 1180 (1529)
T ss_pred ----hhhccHHHHHHHHHHHH
Confidence 22567888888877776
No 4
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=98.88 E-value=1.1e-09 Score=92.42 Aligned_cols=42 Identities=52% Similarity=0.642 Sum_probs=40.9
Q ss_pred HHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHH
Q 047845 860 RAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELL 901 (1801)
Q Consensus 860 K~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLI 901 (1801)
|||++++++||++|..+.|+.+|.+||.|+||+||||||+||
T Consensus 1 k~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 1 KALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred ChHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 799999999999999999999999999999999999999986
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=98.50 E-value=0.00013 Score=96.77 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=105.1
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH---HH--HHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILL---HI--LMLYFV 914 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~---~L--~~~yy~ 914 (1801)
.|.+.+-+.++.+.+|+-|||+|+.|-. |+++ +.+...|.+++.|.+|-||.+|+=-+.|+.. .+ ...+.+
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~--e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~ 182 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL--EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKK 182 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHH
Confidence 4777888899999999999999998743 3333 3367778889999999999999999999432 23 346888
Q ss_pred HHHHHhCCCChhhhHHHHHHHHHHhhhCCC-CcchHHHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 915 KVAERIKDTGVSVRKRAIKIIRDMCTSNTN-FTESTTACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 915 ~I~eRi~D~GVsVRKRvIKilkdIy~~~p~-~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
.|.+.+.|...+|.=.|+..|.+|+...|+ +........+++.++.+-.|--+-...++|..
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 999999999999999999999999987765 22234446788888887666777777777754
No 6
>PTZ00429 beta-adaptin; Provisional
Probab=98.29 E-value=0.0014 Score=87.16 Aligned_cols=143 Identities=13% Similarity=0.094 Sum_probs=100.5
Q ss_pred chhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHH-HHHH
Q 047845 830 NSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGI-LLHI 908 (1801)
Q Consensus 830 ~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI-~~~L 908 (1801)
...+..|..+++ .+..+...+|-=.-=.|....+.+|.+. -.+-.++.+=+.|+.|.||-.|+-.+|+| .+.+
T Consensus 64 ~DvS~LF~dVvk----~~~S~d~elKKLvYLYL~~ya~~~pela--lLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i 137 (746)
T PTZ00429 64 RDVSYLFVDVVK----LAPSTDLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSV 137 (746)
T ss_pred CCchHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHH
Confidence 344444544444 5566666666555555566677777542 12345666678899999999999999995 4458
Q ss_pred HHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 909 LMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 909 ~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
.+...+.|...+.|...-|||.|+=.+-.+|...|+.-........+..-+.|.+-+|.--|..+|.++.
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 8889999999999999999999999888999888874211112223333356888788877777777774
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.20 E-value=0.00085 Score=86.68 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=100.6
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---HHHH-HHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH---ILML-YFV 914 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---L~~~-yy~ 914 (1801)
+.|.+.+-|.++.+.+|+-||++|+.+. +|.+. +.+...|.+.+.|++|.||.+|+--+.++... +... |.+
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~--~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~ 155 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMA--EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIP 155 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHH--HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchh--hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 4578888889999999999999999987 55554 45777888889999999999999999994432 5555 899
Q ss_pred HHHHHhCCCChhhhHHHHHHHHHHhhhCCCCc--c-hHHHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 915 KVAERIKDTGVSVRKRAIKIIRDMCTSNTNFT--E-STTACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 915 ~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~--~-~~~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
.|...+.|+.++|+--|+.++.+| +.++-. . .......+.+.+.+..+-++-.+.++|..
T Consensus 156 ~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~ 218 (526)
T PF01602_consen 156 KLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRR 218 (526)
T ss_dssp HHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTT
T ss_pred HHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHh
Confidence 999999999999999999999999 322211 2 22223333333477777778777787775
No 8
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.98 E-value=0.016 Score=78.86 Aligned_cols=258 Identities=19% Similarity=0.240 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHhhhc-chhhhhhHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhhhhcccccccccchhhHHHHHHh
Q 047845 747 KLEIVQQMLLNYLQDAVS-ADEMNLFVRWFYVCLWYKDDPEAQQKSMYYLARLKSKEIVRESGTISLSLTRDTVKKITLA 825 (1801)
Q Consensus 747 ~~~~lq~~ll~yl~~~~~-~d~~~~~~r~f~~~~w~~d~~~~~~k~~y~~~~l~~~~i~~~s~~~~~~ls~d~~~~i~~~ 825 (1801)
++..++..|++|+..... .+....++|+||+++||+|+..+..+..-.. + +.++.-.. ..| ..+.+.
T Consensus 690 k~~~l~~~Lldfl~~~~~~~~~~~v~~~~fyi~~w~~d~~le~~~~~~~~-----k----d~~s~~~~--~~~-~~~el~ 757 (1692)
T KOG1020|consen 690 KLIVLQKTLLDFLKSNTEETALSEVYACHFYIAQWYRDTRLETILIMEEN-----K----DVDSNEGT--HHW-FSFELA 757 (1692)
T ss_pred hhhhhHHHHHHHHHHhhhccchhhHHHhhHHHHhHHHHHHHHHHHHHHhc-----c----Cccccccc--hhH-HHHHHH
Confidence 567788999999987653 4556789999999999998764432211100 0 00000000 000 000000
Q ss_pred hhccchhhhhHHHHHHHHHHH------hcCCChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHH
Q 047845 826 LGQNNSFSRGFDKILHLLLVS------LRENSPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAA 897 (1801)
Q Consensus 826 l~~~~~f~~sFd~iL~~LL~~------L~~~s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAA 897 (1801)
.-.---..+.+-.|++.|..- ...+++.+=--+.|-+...+...-+... ++-+...| .-+.-++++||--|
T Consensus 758 ~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~yLk~Il-~~l~e~~ialRtkA 836 (1692)
T KOG1020|consen 758 YEKVITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDPYLKLIL-SVLGENAIALRTKA 836 (1692)
T ss_pred HHHHhhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHHHHHHHH-HHhcCchHHHHHHH
Confidence 000000012233333333222 0011121111122222222222222222 34444444 46668889999999
Q ss_pred HHHHHHHHHH----HH-HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHH
Q 047845 898 LELLAGILLH----IL-MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCK 972 (1801)
Q Consensus 898 ldLIGkI~~~----L~-~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~ 972 (1801)
+--|+.|..- |. ...-..|..|+.|.+++||--|+-++...-+..|+ -....-..|+.|+.|.=-+||+-|.+
T Consensus 837 lKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIK 914 (1692)
T KOG1020|consen 837 LKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIK 914 (1692)
T ss_pred HHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHH
Confidence 9999884321 33 46778899999999999999999999988877777 45556688999999999999999999
Q ss_pred HHHhhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcCCChhh-HHHHHHHhhhcccCcc
Q 047845 973 TFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLPNHQL-LVTVIKRNLALDFFPQ 1035 (1801)
Q Consensus 973 tf~elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~~~~~~-lv~~~k~~l~~d~l~~ 1035 (1801)
++.++.-..+. ..+++.-.+.+++++.++.. +..++...+..-||..
T Consensus 915 Ilrdic~e~pd----------------f~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 915 ILRDICEETPD----------------FSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HHHHHHHhCCC----------------hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccC
Confidence 99999975432 13456666777888875433 4444444343456643
No 9
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.71 E-value=0.032 Score=72.26 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-HHHHHHHHH
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-ILMLYFVKV 916 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-L~~~yy~~I 916 (1801)
.++..++..+.++...+|.-+-=.++.+...||.++-- +-.++.+-+.++.+.||-.||..++++... +.+...+.|
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l--~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v 119 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL--IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDV 119 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH--HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH--HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHH
Confidence 44556677777888888888888888899999973322 556666778899999999999999995544 899999999
Q ss_pred HHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 917 AERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 917 ~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
...+.|+..-|||.|+-.+..+|...|+.-... ....+...+.|.+.+|+--|...+.++
T Consensus 120 ~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 120 IKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 999999999999999999999999988842221 344455555888899999999999999
No 10
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.057 Score=72.62 Aligned_cols=83 Identities=19% Similarity=0.279 Sum_probs=74.1
Q ss_pred ccCCCcchH-HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCcccceeeecccCcchhhHHHHHHHHHHH
Q 047845 1335 AGAGDTNIC-GGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNM 1413 (1801)
Q Consensus 1335 ~g~~Dsgv~-s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPtLIALeTdp~~~Ir~~A~~lL~~L 1413 (1801)
.|.||-.+| ..++..+-.+..+...+.+..||..|+-++..++--|.+.=+.-++-+.=+..||++.|+++|..--++|
T Consensus 983 valgDlav~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 983 VALGDLAVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred heccchhhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 467775455 3689999999999999999999999999999999999999999998888899999999999999988888
Q ss_pred HhhC
Q 047845 1414 NEKY 1417 (1801)
Q Consensus 1414 ~eKy 1417 (1801)
..|-
T Consensus 1063 s~k~ 1066 (1251)
T KOG0414|consen 1063 SSKG 1066 (1251)
T ss_pred hhcc
Confidence 7765
No 11
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.61 E-value=0.00025 Score=79.13 Aligned_cols=86 Identities=15% Similarity=0.250 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCccc-ceeeecccCcchhhHHHHHHHHHHHHhh-Chhhhh
Q 047845 1345 GIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCV-PYLIALETDPQEVNSKLAHHLLMNMNEK-YPAFFE 1422 (1801)
Q Consensus 1345 ~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~cv-PtLIALeTdp~~~Ir~~A~~lL~~L~eK-yes~v~ 1422 (1801)
+++..|++.+..+.-++++.||..|+.++..++.+|++.++.-+ ..+..+-.|+++.||+.|...+.++..| ++..+.
T Consensus 21 ~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~ 100 (178)
T PF12717_consen 21 NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNIIY 100 (178)
T ss_pred HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHHH
Confidence 46778888888888899999999999999999999999998765 8888888999999999999999999888 999998
Q ss_pred hhhhhHHH
Q 047845 1423 SRLGDGLQ 1430 (1801)
Q Consensus 1423 ~~~~~GI~ 1430 (1801)
..+.+.|.
T Consensus 101 ~~~~e~i~ 108 (178)
T PF12717_consen 101 NNFPELIS 108 (178)
T ss_pred HHHHHHHH
Confidence 88888774
No 12
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0098 Score=75.82 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=74.6
Q ss_pred ChhHHHHHHHHHHH--HH-HHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHH-HHhhcccCCCchh
Q 047845 890 AISVREAALELLAG--IL-LHILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTAC-IEIISRVNDDESS 965 (1801)
Q Consensus 890 S~sVRDAAldLIGk--I~-~~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~-~~iL~Rv~DEEds 965 (1801)
|+.|=|+-|-|=|= +. +.|+...++-|..-+.-+-.=||||+|-++-.+|+++|+ ..+.| -|+..++.|+|.|
T Consensus 120 S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr~~FprL~EkLeDpDp~ 196 (877)
T KOG1059|consen 120 SSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALRPCFPRLVEKLEDPDPS 196 (877)
T ss_pred cCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHhhhHHHHHHhccCCCch
Confidence 78888887766665 44 349999999999999999999999999999999999988 44555 7999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 047845 966 IQDLVCKTFYEFWF 979 (1801)
Q Consensus 966 IkdLa~~tf~elWF 979 (1801)
|+.-|..+|.|+==
T Consensus 197 V~SAAV~VICELAr 210 (877)
T KOG1059|consen 197 VVSAAVSVICELAR 210 (877)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999854
No 13
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.19 E-value=0.038 Score=71.32 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=76.2
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH--HHHHHHHHHH
Q 047845 841 HLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH--ILMLYFVKVA 917 (1801)
Q Consensus 841 ~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~--L~~~yy~~I~ 917 (1801)
+.+=+.|.++.+-+|+-||+.|+.|= =|. -.|.|..+|+.+..|.||.||..|---|-| .... ...+.-+.|-
T Consensus 111 ntfQk~L~DpN~LiRasALRvlSsIR--vp~--IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 111 NTFQKALKDPNQLIRASALRVLSSIR--VPM--IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK 186 (968)
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHhcc--hhh--HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH
Confidence 34456789999999999999999871 111 147889999999999999999988888888 4433 3345556666
Q ss_pred HHhCCCChhhhHHHHHHHHHHhhh
Q 047845 918 ERIKDTGVSVRKRAIKIIRDMCTS 941 (1801)
Q Consensus 918 eRi~D~GVsVRKRvIKilkdIy~~ 941 (1801)
.-+.|.+..|==-|+=-++++|..
T Consensus 187 ~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhchh
Confidence 677999999999999999999844
No 14
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.64 E-value=1.9 Score=56.18 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=79.6
Q ss_pred hHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCCCChhh
Q 047845 853 IIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-----ILMLYFVKVAERIKDTGVSV 927 (1801)
Q Consensus 853 ~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-----L~~~yy~~I~eRi~D~GVsV 927 (1801)
.-|..++..+-..+..-|.+=.-+ ...+-.+|.++....=+.+++.|+++... +..+|-+.|..-+.-+...|
T Consensus 16 ~~~~~~L~~l~~~~~~~~~l~~~~--~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~V 93 (503)
T PF10508_consen 16 AERLEALPELKTELSSSPFLERLP--EPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKV 93 (503)
T ss_pred cchHHHHHHHHHHHhhhhHHHhch--HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHH
Confidence 344555555555444444221111 11266788877665557788888884332 77889999999999999999
Q ss_pred hHHHHHHHHHHhhhCCCC-c--chHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 928 RKRAIKIIRDMCTSNTNF-T--ESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 928 RKRvIKilkdIy~~~p~~-~--~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
|.-+++.++.+-...... . .-..+...++.-+.|+|.+|.+.|.+++..+=
T Consensus 94 r~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 94 RRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 999999877754222110 0 00223455777788888889888888888764
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=4 Score=52.90 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchh-------HHHHHHhhcCCCChhHHHHHHHHHHH-HH
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKR-------VQLAVEGRFCDSAISVREAALELLAG-IL 905 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~-------Vq~~I~~rl~DsS~sVRDAAldLIGk-I~ 905 (1801)
+.+...|-.+...|.++.-..---|+++|+.|-|--+.+|++.- +..-..+=+.-+||..|--|+.=|.. |.
T Consensus 124 ~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~ 203 (885)
T KOG2023|consen 124 QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII 203 (885)
T ss_pred ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee
Confidence 45688999999999999888889999999999998888887621 22223335568899999999999999 43
Q ss_pred HH------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC--cchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 906 LH------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF--TESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 906 ~~------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~--~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
.+ -+++|.+.+-.+..|...-|||-|.+-+--+....|+. +....|..=||.|.+|.+|+|.=-|++ .
T Consensus 204 ~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACE----F 279 (885)
T KOG2023|consen 204 IQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACE----F 279 (885)
T ss_pred cCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHH----H
Confidence 22 57899999999999999999999999888777777772 444566778999999999888666654 5
Q ss_pred ccC
Q 047845 978 WFE 980 (1801)
Q Consensus 978 WF~ 980 (1801)
|.+
T Consensus 280 wla 282 (885)
T KOG2023|consen 280 WLA 282 (885)
T ss_pred HHH
Confidence 664
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.61 E-value=0.029 Score=62.71 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=77.9
Q ss_pred hhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHH---HH
Q 047845 833 SRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILL---HI 908 (1801)
Q Consensus 833 ~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~---~L 908 (1801)
.+..|+++..+...|.++.+.||-.|+.+|+.++..|.-=....-+...+ .++.|+.+.||+.|..++.. ... ..
T Consensus 20 ~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l-~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~ 98 (178)
T PF12717_consen 20 PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL-KLLVDENPEIRSLARSFFSELLKKRNPNI 98 (178)
T ss_pred cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHhccchH
Confidence 35668889999999999999999999999999999987555544434444 58899999999999999999 444 25
Q ss_pred HHHHHHHHHHHhCCC---------ChhhhHHHHHHHHHH
Q 047845 909 LMLYFVKVAERIKDT---------GVSVRKRAIKIIRDM 938 (1801)
Q Consensus 909 ~~~yy~~I~eRi~D~---------GVsVRKRvIKilkdI 938 (1801)
..+.++.++-++.+. +..-|+++++.+=+.
T Consensus 99 i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~ 137 (178)
T PF12717_consen 99 IYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDF 137 (178)
T ss_pred HHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHH
Confidence 556666666666652 333455555555443
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.35 E-value=6.9 Score=52.60 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC---------------------------------------cccc-
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVD---------------------------------------PEVL- 873 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~D---------------------------------------PsIL- 873 (1801)
.+|-+.+++||..|.+...-|.--|+|||+-++.+= |+.=
T Consensus 43 dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~ 122 (1233)
T KOG1824|consen 43 DSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSS 122 (1233)
T ss_pred cchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccc
Confidence 467788999999999999999999999999655432 2111
Q ss_pred -CchhHHHHHHhhcCCC------ChhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCC----hhhhHHHHHHHHHHh
Q 047845 874 -CDKRVQLAVEGRFCDS------AISVREAALELLAGILLH---ILMLYFVKVAERIKDTG----VSVRKRAIKIIRDMC 939 (1801)
Q Consensus 874 -~~~~Vq~~I~~rl~Ds------S~sVRDAAldLIGkI~~~---L~~~yy~~I~eRi~D~G----VsVRKRvIKilkdIy 939 (1801)
..+.|-..+-.+|.+. ...||=-++|+++-+.++ +...|+..|.....+.- -.||||+|-.+-++-
T Consensus 123 ~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la 202 (1233)
T KOG1824|consen 123 FLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLA 202 (1233)
T ss_pred ccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHH
Confidence 1223333333333322 223777789999996666 66679999988888764 459999998776655
Q ss_pred hhCCC
Q 047845 940 TSNTN 944 (1801)
Q Consensus 940 ~~~p~ 944 (1801)
...++
T Consensus 203 ~~~~~ 207 (1233)
T KOG1824|consen 203 SSCNR 207 (1233)
T ss_pred HhcCH
Confidence 44443
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.02 E-value=3.3 Score=60.82 Aligned_cols=221 Identities=16% Similarity=0.109 Sum_probs=124.5
Q ss_pred HHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHH--HHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhcccccccc
Q 047845 1150 LKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVE--HLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTS 1227 (1801)
Q Consensus 1150 L~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~--~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~ 1227 (1801)
|..++.-.+ .++...++|||+.++..-......+. ..+..+...|... +......++.++|.++...+.....
T Consensus 409 LV~LL~~~~-~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~---s~~iQ~~A~~~L~nLa~~ndenr~a- 483 (2102)
T PLN03200 409 LVGLITMAT-ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLS---SEQQQEYAVALLAILTDEVDESKWA- 483 (2102)
T ss_pred hhhhhccCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHH-
Confidence 444443323 46777889999999754332222221 1244455556543 2222234456666666422211000
Q ss_pred ccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcc---hhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 047845 1228 YEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPE---HMLEKDIGKILEATLADSSHIRLKMQALQNLYEYL 1304 (1801)
Q Consensus 1228 ~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~---l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL 1304 (1801)
+--...++.|.+.+...+..+|..|..+||.+|...+. .+....+.+.+-..|.++ +.+.|..++..|..++
T Consensus 484 ----IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 484 ----ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLV 558 (2102)
T ss_pred ----HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 00011345555666678899999999999999983221 111222233333344433 2233333333332221
Q ss_pred HHHhhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHh------
Q 047845 1305 LDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLR------ 1378 (1801)
Q Consensus 1305 ~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilr------ 1378 (1801)
. .+|.. .+ +.++.+.++.++.+...++++++.++.
T Consensus 559 ~-------------------------------~~d~~----~I----~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 559 R-------------------------------TADAA----TI----SQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred h-------------------------------ccchh----HH----HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 1 01111 11 556677888888999999999877744
Q ss_pred ---cCccCCCcccceeeecccCcchhhHHHHHHHHHHHHhhChhh
Q 047845 1379 ---QGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPAF 1420 (1801)
Q Consensus 1379 ---QGLVhP~~cvPtLIALeTdp~~~Ir~~A~~lL~~L~eKyes~ 1420 (1801)
+|-..+ .++|.|+.|..++++.+++.|...+-.+..-+++.
T Consensus 600 ~~~~g~~~~-ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~ 643 (2102)
T PLN03200 600 LVREGSAAN-DALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL 643 (2102)
T ss_pred HHHHhhhcc-ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence 443233 69999999999999999999999988887766554
No 19
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.97 E-value=0.092 Score=60.58 Aligned_cols=140 Identities=11% Similarity=0.146 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--HHHHH-H
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAGILLH--ILMLY-F 913 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--L~~~y-y 913 (1801)
++..|...+.+.-.+|-..|+.+|+.+...-..=+. .+.+-..+..++.|+...||++|...+-.|..+ ...+. .
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~ 133 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILL 133 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHH
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 334566666666677778899999988876655554 244566777899999999999999999885444 34666 8
Q ss_pred HHHHHHhCCCChhhhHHHHHHHHHHhhhCC---C-Ccc---hHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 914 VKVAERIKDTGVSVRKRAIKIIRDMCTSNT---N-FTE---STTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 914 ~~I~eRi~D~GVsVRKRvIKilkdIy~~~p---~-~~~---~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
+.+..-..+.+..||.+++..+..+....+ . +.. ...+...|..-++|....||+.|+++|..+.
T Consensus 134 ~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 134 EILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 888889999999999999999999998888 1 111 1334566778889999999999999998874
No 20
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=2.8 Score=55.07 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=102.1
Q ss_pred hhhHHHHHHhhhccchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc--ccCchhHHHHHHhhcCCCChhH
Q 047845 816 RDTVKKITLALGQNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE--VLCDKRVQLAVEGRFCDSAISV 893 (1801)
Q Consensus 816 ~d~~~~i~~~l~~~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs--IL~~~~Vq~~I~~rl~DsS~sV 893 (1801)
.|+.++|.--+|+-..-+..|...++ -.++..+.||----=-|-+-.|.+|+ +|.-..+|++ |.|+.+.+
T Consensus 53 leAmKRIia~iA~G~dvS~~Fp~VVK----NVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~----L~DpN~Li 124 (968)
T KOG1060|consen 53 LEAMKRIIALIAKGKDVSLLFPAVVK----NVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKA----LKDPNQLI 124 (968)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHH----HhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhh----hcCCcHHH
Confidence 45556665556666666666655444 44556777766555556777899885 4555666655 78999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcc-hHHHHHHhhcccCCCchhHHHHHH
Q 047845 894 REAALELLAGILLH-ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTE-STTACIEIISRVNDDESSIQDLVC 971 (1801)
Q Consensus 894 RDAAldLIGkI~~~-L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~-~~~i~~~iL~Rv~DEEdsIkdLa~ 971 (1801)
|-+|+-.++.|-.+ ++.=..-.|-+++.|+++-|||-|---+-.+|---|+... ..++..++| .|....|.--|.
T Consensus 125 RasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~~LL---aD~splVvgsAv 201 (968)
T KOG1060|consen 125 RASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIKKLL---ADRSPLVVGSAV 201 (968)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHHHHh---cCCCCcchhHHH
Confidence 99999999997655 7777888899999999999999998877778866666332 222222222 455545544444
Q ss_pred HHHHhh
Q 047845 972 KTFYEF 977 (1801)
Q Consensus 972 ~tf~el 977 (1801)
-+|+|+
T Consensus 202 ~AF~ev 207 (968)
T KOG1060|consen 202 MAFEEV 207 (968)
T ss_pred HHHHHh
Confidence 444444
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.91 E-value=0.08 Score=61.06 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=86.6
Q ss_pred cchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhH-HHHHHhhcCCCChhHHHHHHHHHHH-HH-
Q 047845 829 NNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRV-QLAVEGRFCDSAISVREAALELLAG-IL- 905 (1801)
Q Consensus 829 ~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~V-q~~I~~rl~DsS~sVRDAAldLIGk-I~- 905 (1801)
...|-..++.++..|+..+++.+..+|..|..||..|++.-+ . .+.+ ...+...+.+-++.||..++.++.. +.
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~-~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--Y-SPKILLEILSQGLKSKNPQVREECAEWLAIILEK 161 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--c-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 445777788899999999999999999999999999998755 1 2334 7777778899999999999999998 32
Q ss_pred -H---H------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 906 -L---H------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 906 -~---~------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
. . ...++.+.|...+.|....||+-+-+.+..+|...|+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 2 1 2367999999999999999999999999999877665
No 22
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.75 E-value=0.059 Score=68.97 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=98.8
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHh--cCccccCchhHHHHHHhh-cCCCChhHHHHHHHHHHHHHHHHHHH
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVE--VDPEVLCDKRVQLAVEGR-FCDSAISVREAALELLAGILLHILML 911 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive--~DPsIL~~~~Vq~~I~~r-l~DsS~sVRDAAldLIGkI~~~L~~~ 911 (1801)
.|+++...++.-+-+--|.||--|++||+.+=+ .||.. .|.++...- =.|+|+-||-||+.-|. .-..
T Consensus 123 vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~----~v~n~l~~liqnDpS~EVRRaaLsnI~-----vdns 193 (892)
T KOG2025|consen 123 VFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC----PVVNLLKDLIQNDPSDEVRRAALSNIS-----VDNS 193 (892)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCCcHHHHHHHHHhhc-----cCcc
Confidence 588999999999999999999999999999864 33322 233333222 25999999999998776 4467
Q ss_pred HHHHHHHHhCCCChhhhHHHHH-HHHHHhhhCCCCcchHHHHHHhh-cccCCCchhHHHHHHHHHHhhccCCCC
Q 047845 912 YFVKVAERIKDTGVSVRKRAIK-IIRDMCTSNTNFTESTTACIEII-SRVNDDESSIQDLVCKTFYEFWFEEPS 983 (1801)
Q Consensus 912 yy~~I~eRi~D~GVsVRKRvIK-ilkdIy~~~p~~~~~~~i~~~iL-~Rv~DEEdsIkdLa~~tf~elWF~p~~ 983 (1801)
-|+.|.+|.+|....+||=|-. +|..|-.+.-+..++ ..++ .-++|.|++|+.-+.+.+..=|+.-..
T Consensus 194 Tlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~kr----v~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d 263 (892)
T KOG2025|consen 194 TLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKR----VLLLEWGLNDREFSVKGALVDAILSGWLRFSD 263 (892)
T ss_pred cchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHH----HHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc
Confidence 8899999999999999997743 344442222221111 2222 567999999999999999999996543
No 23
>PRK09687 putative lyase; Provisional
Probab=95.29 E-value=0.12 Score=62.09 Aligned_cols=129 Identities=18% Similarity=0.109 Sum_probs=95.5
Q ss_pred HHHHHHHHHH-hcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 837 DKILHLLLVS-LRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVK 915 (1801)
Q Consensus 837 d~iL~~LL~~-L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~ 915 (1801)
+..+..|... +.++.+.||.-|+.+|+.+=. +.....+..-......+.|+++.||-+|+.-+|++.. .+.++.
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~--~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~---~~ai~~ 163 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCK--KNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND---EAAIPL 163 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccc--cccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC---HHHHHH
Confidence 3445555544 577789999999999999832 2222234444455567889999999999999998543 457788
Q ss_pred HHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 916 VAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 916 I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
|+..+.|+...||+.++.-|..+...+| .+...++..+.|+++.|+.-|...|.+
T Consensus 164 L~~~L~d~~~~VR~~A~~aLg~~~~~~~------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 164 LINLLKDPNGDVRNWAAFALNSNKYDNP------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcCCCCCH------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 8999999999999999999998832222 344456667799999999999988876
No 24
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=0.14 Score=71.25 Aligned_cols=165 Identities=19% Similarity=0.310 Sum_probs=117.7
Q ss_pred hhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH--HH---
Q 047845 831 SFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG--IL--- 905 (1801)
Q Consensus 831 ~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk--I~--- 905 (1801)
.++..|+...+..|+-+.+-++.||=+++++..+++-.+|++.....+..++..|..|. -||=..+=.|+. +.
T Consensus 293 ~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~--~~rir~~v~i~~~~v~~~~ 370 (1266)
T KOG1525|consen 293 QLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDE--DVRVRTQVVIVACDVMKFK 370 (1266)
T ss_pred hhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCCh--hhhheeeEEEEEeehhHhh
Confidence 34477899999999999999999999999999999999999999888888876565554 555444444554 22
Q ss_pred HHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhh------------CCCCcchHHHHHHhhcccCCCchhHHHHHHHH
Q 047845 906 LHILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTS------------NTNFTESTTACIEIISRVNDDESSIQDLVCKT 973 (1801)
Q Consensus 906 ~~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~------------~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~t 973 (1801)
..++...+....||.+|.-+.|||-||+-|-++|.+ ++.|.- |-.+||+=..+-....+.++-.+
T Consensus 371 l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~sw---Ip~kLL~~~y~~~~~~r~~vE~i 447 (1266)
T KOG1525|consen 371 LVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSW---IPDKLLHLYYENDLDDRLLVERI 447 (1266)
T ss_pred hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccc---cchhHHhhHhhccccHHHHHHHH
Confidence 225555999999999999999999999988888874 222222 22455544433223456777788
Q ss_pred HHhhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcCC
Q 047845 974 FYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLP 1015 (1801)
Q Consensus 974 f~elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~~ 1015 (1801)
|.+..|.+. .+..+++..++.++..+.
T Consensus 448 l~~~L~P~~---------------l~~q~Rmk~l~~~l~~~D 474 (1266)
T KOG1525|consen 448 LAEYLVPYP---------------LSTQERMKHLYQLLAGLD 474 (1266)
T ss_pred HHHhhCCCC---------------CCHHHHHHHHHHHHhccc
Confidence 888777543 233456666666666543
No 25
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.27 E-value=0.071 Score=66.79 Aligned_cols=135 Identities=17% Similarity=0.178 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHh--cCccccCchhHHHHHHhhc-CCCChhHHHHHHHHHHHHHHHHHHH
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVE--VDPEVLCDKRVQLAVEGRF-CDSAISVREAALELLAGILLHILML 911 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive--~DPsIL~~~~Vq~~I~~rl-~DsS~sVRDAAldLIGkI~~~L~~~ 911 (1801)
.|+.++-.|..-+-+--++||--|+|||+..=| .||. ..+...+..-+ .|+|.-||.+|+--|. .-..
T Consensus 129 l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee----n~~~n~l~~~vqnDPS~EVRr~allni~-----vdns 199 (885)
T COG5218 129 LANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE----NRIVNLLKDIVQNDPSDEVRRLALLNIS-----VDNS 199 (885)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH----HHHHHHHHHHHhcCcHHHHHHHHHHHee-----eCCC
Confidence 356666666677777889999999999998753 4442 23333333222 4999999999986655 3356
Q ss_pred HHHHHHHHhCCCChhhhHHH----HHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCCC
Q 047845 912 YFVKVAERIKDTGVSVRKRA----IKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPS 983 (1801)
Q Consensus 912 yy~~I~eRi~D~GVsVRKRv----IKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~ 983 (1801)
-|+-|.||.+|.+..-||=| ++-+.|.| .-+..+++.+. =--++|.|.+|+.-+..++..-|..|..
T Consensus 200 T~p~IlERarDv~~anRr~vY~r~Lp~iGd~~--~lsi~kri~l~---ewgl~dRe~sv~~a~~d~ia~~w~~~~d 270 (885)
T COG5218 200 TYPCILERARDVSGANRRMVYERCLPRIGDLK--SLSIDKRILLM---EWGLLDREFSVKGALVDAIASAWRIPED 270 (885)
T ss_pred cchhHHHHhhhhhHHHHHHHHHHHhhhhcchh--hccccceehhh---hhcchhhhhhHHHHHHHHHHHHhccccc
Confidence 78999999999999999854 33333333 22222333322 1346898999999999999999998865
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.19 E-value=0.19 Score=65.27 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc---cccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--H
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDP---EVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH--I 908 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP---sIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--L 908 (1801)
.....|...+...|..+.+.||.-|++.|..++.... .++.+..+-..|-.++.|...+|..+|..++.++.++ -
T Consensus 73 ~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 73 SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 3467788889999999999999999999999987664 3455677888888899999999999999999996655 1
Q ss_pred HHHH-----HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-HH--HHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 909 LMLY-----FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-TT--ACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 909 ~~~y-----y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-~~--i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
.... ...|..-+.-..-.||-||.-++-.|+...++.-.. .. +...++.-+.++|--||-=|.++|.++=-
T Consensus 153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 1112 344444443336679999999999998766652222 22 44567777888665566667777766644
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.63 E-value=0.21 Score=48.35 Aligned_cols=84 Identities=26% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHHHHHh-cCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 841 HLLLVSL-RENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAER 919 (1801)
Q Consensus 841 ~~LL~~L-~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~eR 919 (1801)
..|+..| .++.+.+|..|+++|+.+ .++.+...+...+.|+.+.||.+|+.-+|++.. ++..+.|.+.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~---~~~~~~L~~~ 70 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD---PEAIPALIKL 70 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---HHTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---HHHHHHHHHH
Confidence 4566667 678899999999999933 356777777788899999999999999998543 4566677777
Q ss_pred hCCCC-hhhhHHHHHHH
Q 047845 920 IKDTG-VSVRKRAIKII 935 (1801)
Q Consensus 920 i~D~G-VsVRKRvIKil 935 (1801)
+.|+. -.||.-++.-|
T Consensus 71 l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 71 LQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HTC-SSHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHhhc
Confidence 76654 45677776643
No 28
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.54 E-value=0.17 Score=70.15 Aligned_cols=120 Identities=19% Similarity=0.212 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAER 919 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~eR 919 (1801)
+..|+..+.++.+-||..|+.+|+.+-.. +.+-..+..-+.|+++.||.+|+.-+|++-. .+-.+.|...
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---~~a~~~L~~~ 846 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATAALRASAWQVRQGAARALAGAAA---DVAVPALVEA 846 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHHHhcCCChHHHHHHHHHHHhccc---cchHHHHHHH
Confidence 45566777778899999999999888322 2232335557889999999999999998533 3455888889
Q ss_pred hCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 920 IKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 920 i~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
+.|+...||+.|+..|..+ +. -..+...+...++|++..|+.-|.+.|..
T Consensus 847 L~D~~~~VR~~A~~aL~~~----~~---~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 847 LTDPHLDVRKAAVLALTRW----PG---DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred hcCCCHHHHHHHHHHHhcc----CC---CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999998885 11 12233445567778888999998888763
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.37 E-value=12 Score=55.62 Aligned_cols=140 Identities=12% Similarity=0.124 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH-----H--
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSAISVREAALELLAGILL-----H-- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~-----~-- 907 (1801)
-.+.|++.|......++++|..+|..+..-++. |.+...|...| +.|..++..+|+.|+..+|.+.. +
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV-~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~a 483 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI-SLLGLSSEQQQEYAVALLAILTDEVDESKWA 483 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345678888888889999999999999877654 33333455444 47777889999999999998542 1
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHH---HHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTA---CIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i---~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
......+.+.+-+......+||.++-.+-.++...++....... ...|+.-+.+.+.-+++.|..++..+-.
T Consensus 484 IieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 484 ITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 33457888888888888899999999999998743332222211 1234444555566788888888888744
No 30
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=26 Score=46.63 Aligned_cols=403 Identities=13% Similarity=0.106 Sum_probs=208.1
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCCh-hHHHHHHHHHHHH----HHH-HHH
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAI-SVREAALELLAGI----LLH-ILM 910 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~-sVRDAAldLIGkI----~~~-L~~ 910 (1801)
..+=+.++..|+++-|..+|-|=-|++.|.-.-=-.=.=|.+...+.+-.++.-+ .||+++++-||-| .+. ++.
T Consensus 89 eqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~ 168 (859)
T KOG1241|consen 89 EQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQ 168 (859)
T ss_pred HHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHH
Confidence 4455788999999999999999999999954321111125555555556666655 4999999999984 344 555
Q ss_pred HHHHHHHH-----HhCCCChhhhHHHHHHHHHHhhhCC-CCcchH---HHHHHhhcccCCCchhHHHHHHHHHHhhccCC
Q 047845 911 LYFVKVAE-----RIKDTGVSVRKRAIKIIRDMCTSNT-NFTEST---TACIEIISRVNDDESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 911 ~yy~~I~e-----Ri~D~GVsVRKRvIKilkdIy~~~p-~~~~~~---~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p 981 (1801)
++=..+.+ |-.-++-.||=-+.+.|-+-..-+. +|..-- .+..-...-.+-+|+.|+--|.+.|-.+--.-
T Consensus 169 ~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~Ly 248 (859)
T KOG1241|consen 169 QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLY 248 (859)
T ss_pred HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHH
Confidence 55444332 3345666699999998887554444 443321 22222334446677789999988877654221
Q ss_pred CCCCcccccCCCCCchHHHHH-HHHHHHHHHhcCCChhh-------HHHHHHHhhhcccCcchhhh--hCCCcchhhHHH
Q 047845 982 PSGLQTQYFGDGSSVPLEVAK-KTEQIVEMSRGLPNHQL-------LVTVIKRNLALDFFPQSAKA--AGINPMSLASVR 1051 (1801)
Q Consensus 982 ~~~~~~~~~~d~ss~~~~~~~-k~~~iv~vl~~~~~~~~-------lv~~~k~~l~~d~l~~~~k~--~~~~~~~~~~v~ 1051 (1801)
-..- .....+ .-...+..++ ..+.+. +..++.... |..-+.... .+..|...---+
T Consensus 249 Y~~m-----------~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEi--D~~~e~~e~~d~~~~p~~~~fa~ 314 (859)
T KOG1241|consen 249 YEFM-----------EPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEI--DLAIEYGEAVDQGLPPSSKYFAR 314 (859)
T ss_pred HHHH-----------HHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhcCCCchhhHHHH
Confidence 0000 000000 0000011111 111110 111111111 100000000 111111111123
Q ss_pred HHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccCh-----HHH-H
Q 047845 1052 RRCELMCKCLLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDN-----RVV-A 1125 (1801)
Q Consensus 1052 ~~c~~ivd~LVe~ll~lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~-----~~~-~ 1125 (1801)
.+.+-+|..|++.|...++.+.++.....++.=..|.+|+.+.-..++| ...|+++..-.+ .+. +
T Consensus 315 ~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~---------~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 315 QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP---------HVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh---------hhHHHHHHhcCCcchhhhhHHH
Confidence 4556789999999888777766666655555444577787765444443 456888743222 111 2
Q ss_pred HhhcceeeeccCCChhHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHhhhcCC
Q 047845 1126 KFLESVIFIIDALPSSVIEELEQDLKHMIVRH---SFLTVVHACIKCLCSVSKISGKG---LSTVEHLILVFFKYLDSHN 1199 (1801)
Q Consensus 1126 ~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~---~~~~vv~acv~CL~~l~~~~~~~---~~~v~~~i~~~~~~L~~~~ 1199 (1801)
-.|-+ +++.+.+.-++.+..+.++.|.+- +.+.+-...-|||+.|...+.-. .-.....++.+...|...+
T Consensus 386 mAFGS---Il~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DeP 462 (859)
T KOG1241|consen 386 MAFGS---ILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEP 462 (859)
T ss_pred HHHHh---hhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCc
Confidence 22333 566677777888887777766432 23445567789999998765421 1122222333443333221
Q ss_pred CCChhhhhhHHHHHHHHHhhccccccccccCccchhhhH-HHHHHHhh---c---CChHHHHHHHHHHHHHHhcCcch
Q 047845 1200 PDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNL-NLFKRYLR---M---EDFSVKVRSLQALGFVLIARPEH 1270 (1801)
Q Consensus 1200 ~d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l-~lf~~~~~---~---~d~~iR~~AL~aLG~lc~s~P~l 1270 (1801)
- -.....+++ -.|+.+++...... +.....++.. .+....+. . .+..+|..|-++||-+..-.|+-
T Consensus 463 r-va~N~CWAf---~~Laea~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~ 535 (859)
T KOG1241|consen 463 R-VASNVCWAF---ISLAEAAYEAAVSN-GQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD 535 (859)
T ss_pred h-HHHHHHHHH---HHHHHHHHHhccCC-CCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH
Confidence 0 000112221 13344444433222 1211122111 12221111 1 34679999999999998888863
No 31
>PRK09687 putative lyase; Provisional
Probab=94.29 E-value=0.31 Score=58.59 Aligned_cols=129 Identities=12% Similarity=0.081 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhh-cCCCChhHHHHHHHHHHHHHHH---HHHHHH
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGR-FCDSAISVREAALELLAGILLH---ILMLYF 913 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~r-l~DsS~sVRDAAldLIGkI~~~---L~~~yy 913 (1801)
..+..+...+.++.+.+|.-|..+|+++-..+.. .+.+-..+..- +.|+.+.||.+|+.-+|.+... ......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~ 130 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV 130 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence 3445556667788999999999999998554321 22344444433 6799999999999999995322 234567
Q ss_pred HHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 914 VKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 914 ~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+.+.....|+...||..|+.-|-.+ . + .++..-|+..+.|++..|+.-|...|-++
T Consensus 131 ~~l~~~~~D~~~~VR~~a~~aLg~~--~--~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 131 EQSQITAFDKSTNVRFAVAFALSVI--N--D----EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHhcc--C--C----HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 7788889999999999999998544 1 1 23455666777899999999999999887
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.63 E-value=0.18 Score=51.04 Aligned_cols=101 Identities=15% Similarity=0.081 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccC---chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-------H
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLC---DKRVQLAVEGRFCDSAISVREAALELLAGILLH-------I 908 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~---~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------L 908 (1801)
.+..++..|.++.+.+|..|+.+|+.+...+|..-. ...+-..+...+.|+.+.||.+|+..++.+... +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 466777888888899999999999999877543332 223444555678899999999999999995322 1
Q ss_pred -HHHHHHHHHHHhCCCChhhhHHHHHHHHHHh
Q 047845 909 -LMLYFVKVAERIKDTGVSVRKRAIKIIRDMC 939 (1801)
Q Consensus 909 -~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy 939 (1801)
.....+.+...+.+....||+.++.++..+|
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2235777888888888889999988888776
No 33
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.55 E-value=28 Score=46.00 Aligned_cols=57 Identities=23% Similarity=0.128 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC-ccccC-chhHHHHHHhhcCCCChhHHH
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVD-PEVLC-DKRVQLAVEGRFCDSAISVRE 895 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~D-PsIL~-~~~Vq~~I~~rl~DsS~sVRD 895 (1801)
-++|+.++++ ..+-.-|-..+||+.+|...- =++|. -..+..+|+..+.|.+--||-
T Consensus 513 lpfLkavc~S--kkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~ 571 (1172)
T KOG0213|consen 513 LPFLKAVCGS--KKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRT 571 (1172)
T ss_pred HHHHHHHhcc--ccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhh
Confidence 3444444443 234567889999999986543 35555 455778899999999999984
No 34
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.18 E-value=51 Score=45.99 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAGILLH----- 907 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~----- 907 (1801)
.|.-+|..|..+..+..+..|=-|+..|+++.+.=++-+. -+++.....+++.|+|..||=+|+--+|-+...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 7899999999999999999999999999999988777776 357899999999999999999999999982211
Q ss_pred --------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC-----cchHHHHHHhhcccCCCchhHHHHHHHHH
Q 047845 908 --------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF-----TESTTACIEIISRVNDDESSIQDLVCKTF 974 (1801)
Q Consensus 908 --------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~-----~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf 974 (1801)
+.+.....+-+-+.|.-.-+=|-|.+.+-++-...|.+ ..+...|.+|.. -.+-|+++|-+|.+.+
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~-n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAK-NKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh-cccccHHHHHHHHHHH
Confidence 33444444444555555557788999999998887764 223344444443 3556669999999887
Q ss_pred H
Q 047845 975 Y 975 (1801)
Q Consensus 975 ~ 975 (1801)
-
T Consensus 274 v 274 (1075)
T KOG2171|consen 274 V 274 (1075)
T ss_pred H
Confidence 4
No 35
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.06 E-value=1.8 Score=52.45 Aligned_cols=150 Identities=16% Similarity=0.194 Sum_probs=102.3
Q ss_pred HhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccc
Q 047845 1244 YLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEY 1323 (1801)
Q Consensus 1244 ~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~ 1323 (1801)
.....+..||..|+++||..|.-..++-.. ...+|-+.++.+ +..+|+.+|+.+.|.+.......-.....
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~--~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~------ 105 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKE--HLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSESD------ 105 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHH--HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchhc------
Confidence 445678899999999999999988866554 466677777655 78999999999999998654322111110
Q ss_pred cccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCC-CcccceeeecccCcchhh
Q 047845 1324 TVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHP-ITCVPYLIALETDPQEVN 1402 (1801)
Q Consensus 1324 ~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP-~~cvPtLIALeTdp~~~I 1402 (1801)
+. ... -...+++.| .+...+.++.++..|++-+.-++-.|-+++ ...+-.||-+--+|...-
T Consensus 106 ---~~--------~~~--~~~~l~~~l----~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 106 ---ND--------ESV--DSKSLLKIL----TKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred ---cC--------ccc--hHhHHHHHH----HHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCC
Confidence 00 000 011233332 333334478899999999999999999999 888888888877876554
Q ss_pred HHHHHHHHHHHHhhChh
Q 047845 1403 SKLAHHLLMNMNEKYPA 1419 (1801)
Q Consensus 1403 r~~A~~lL~~L~eKyes 1419 (1801)
...-.++|...+.-|..
T Consensus 169 ~~~LrQ~L~~Ffp~y~~ 185 (298)
T PF12719_consen 169 NQRLRQCLSVFFPVYAS 185 (298)
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 44555666666655554
No 36
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.99 E-value=0.77 Score=58.94 Aligned_cols=105 Identities=21% Similarity=0.189 Sum_probs=86.2
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHh---cCccccCc-----hhHHHHHHhhcCCCChhHHHHHHHHHHHHHH-H---
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVE---VDPEVLCD-----KRVQLAVEGRFCDSAISVREAALELLAGILL-H--- 907 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive---~DPsIL~~-----~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~-~--- 907 (1801)
++++...|++.+.++|---+...+.+|+ .||..... .+....+..||.|++|-+|--|+....||-. .
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4666778899999999999999999986 67755441 2234567789999999999999999999431 1
Q ss_pred --HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 908 --ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 908 --L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
--.++.+....|+.|.+.-|||.+||++-.+..++|=
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 3467888899999999999999999999999999884
No 37
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=40 Score=47.06 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=86.4
Q ss_pred eeccCCChhHHHHHHHHHHHHHh--cc-C--hHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCC-CChhhh
Q 047845 1133 FIIDALPSSVIEELEQDLKHMIV--RH-S--FLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNP-DSKQVV 1206 (1801)
Q Consensus 1133 ~i~~~Lp~~fl~eLe~dL~~lI~--k~-~--~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~-d~~~~l 1206 (1801)
.|++.+|..+..-+...+..+|. |. + ......+|+-|+|++.......+.-+...++.|...+..--. +...+.
T Consensus 723 ~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~ 802 (1176)
T KOG1248|consen 723 RLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVV 802 (1176)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHH
Confidence 35555665444444444443332 32 1 234567899999976555444333345556666544432211 222222
Q ss_pred hhHHHHHHHHHhhccccccccccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhc
Q 047845 1207 GRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLA 1285 (1801)
Q Consensus 1207 ~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~ 1285 (1801)
.+.|.-++ +-+.+|... .-...+...++...-|+.....+|++.|+..+--+|...|..++++++-.++-.+|.
T Consensus 803 as~Ivai~--~il~e~~~~---ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ 876 (1176)
T KOG1248|consen 803 ASDIVAIT--HILQEFKNI---LDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLA 876 (1176)
T ss_pred HHHHHHHH--HHHHHHhcc---ccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHH
Confidence 33333222 222222111 111345566677777888889999999999999999999999999998888888875
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.70 E-value=0.096 Score=46.76 Aligned_cols=52 Identities=31% Similarity=0.219 Sum_probs=39.9
Q ss_pred hhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 047845 852 PIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAG 903 (1801)
Q Consensus 852 ~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGk 903 (1801)
+.||..|+.+|+.+.+.-|..+. .+.+...+...+.|+++.||++|..-+|.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46888888888887776666665 45667777778888888888888887774
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=92.52 E-value=0.51 Score=65.56 Aligned_cols=118 Identities=19% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAE 918 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~e 918 (1801)
.+..|...|.++.+.||..|+++|..+.+..|. ...+...|.|+++.||-+|++.+|.+...- ...+..
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~----~~~l~~ 721 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRDHLGSPDPVVRAAALDVLRALRAGD----AALFAA 721 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHHHhcCCCHHHHHHHHHHHHhhccCC----HHHHHH
Confidence 345555666666666666666666666554332 123334555666667777766666522110 013344
Q ss_pred HhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 919 RIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 919 Ri~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
.+.|+-..||+.+++-|..+ .. . ..++..++|++..||.-|.+.|..++
T Consensus 722 ~L~D~d~~VR~~Av~aL~~~----~~---~----~~l~~~l~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 722 ALGDPDHRVRIEAVRALVSV----DD---V----ESVAGAATDENREVRIAVAKGLATLG 770 (897)
T ss_pred HhcCCCHHHHHHHHHHHhcc----cC---c----HHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 56666666777666666653 11 0 12345566666666666666666554
No 40
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=90.42 E-value=1.5 Score=56.55 Aligned_cols=137 Identities=17% Similarity=0.214 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhH--HHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHH---HHH
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAK--ALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAG---ILL 906 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSK--ALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGk---I~~ 906 (1801)
.+--.+|-.+|..+.+. +-||| |+--|+.+++..|..|+ .|++-..+...|.|+.|.||+|+.+-+-+ +..
T Consensus 250 ~aVK~llpsll~~l~~~--kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svid 327 (569)
T KOG1242|consen 250 YAVKLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVID 327 (569)
T ss_pred chhhHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhc
Confidence 34456677777777766 77765 78889999999999998 68888888999999999999999999888 233
Q ss_pred H-HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-----HHHHHHhhccc-CCCchhHHHHHHHHHHhhc
Q 047845 907 H-ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-----TTACIEIISRV-NDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 907 ~-L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-----~~i~~~iL~Rv-~DEEdsIkdLa~~tf~elW 978 (1801)
+ .+..|++.|.+++.|+.- ++++.++.++.. .|-.- ..+.+-||+|= ++.+.++++.+.+++..|-
T Consensus 328 N~dI~~~ip~Lld~l~dp~~----~~~e~~~~L~~t--tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 328 NPDIQKIIPTLLDALADPSC----YTPECLDSLGAT--TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred cHHHHHHHHHHHHHhcCccc----chHHHHHhhcce--eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 3 899999999999999984 556666777633 23221 23346666654 5566677766666555443
No 41
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.94 E-value=65 Score=43.29 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=64.5
Q ss_pred cCCCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch---HHHHHHhhcccCC
Q 047845 886 FCDSAISVREAALELLAGI-LLHILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES---TTACIEIISRVND 961 (1801)
Q Consensus 886 l~DsS~sVRDAAldLIGkI-~~~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~---~~i~~~iL~Rv~D 961 (1801)
+-|.+|.+|=-|+.-.|.+ ..++...+++.|.....|.-.=|||-|.=+...+|...++.-.. .+...-|+. |
T Consensus 95 ~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~---D 171 (734)
T KOG1061|consen 95 CEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS---D 171 (734)
T ss_pred CCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc---C
Confidence 4466666666666666652 23366777888888888888888888887777777777764332 333455555 8
Q ss_pred CchhHHHHHHHHHHhhccCC
Q 047845 962 DESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 962 EEdsIkdLa~~tf~elWF~p 981 (1801)
+...|..-|.-.+.|+|=..
T Consensus 172 ~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 172 SNPMVVANALAALSEIHESH 191 (734)
T ss_pred CCchHHHHHHHHHHHHHHhC
Confidence 87788888889999998544
No 42
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.88 E-value=2.1 Score=58.69 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=104.0
Q ss_pred hcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccc
Q 047845 1246 RMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTV 1325 (1801)
Q Consensus 1246 ~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~ 1325 (1801)
...+++||..-++.||.-|.++|++|++...++-+.=.|.+. ...++.++|+.|.-++...|-
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk-~~~VRl~~lkaL~~L~e~~~~---------------- 359 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDK-NGTVRLRCLKALIKLYEKDED---------------- 359 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecC-ccHHHHHHHHHHHHHHhcccc----------------
Confidence 457889999999999999999999999999999888888754 566777788877766542110
Q ss_pred cCCccccccccCCCcchHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHhcCccCCCcccceeeecccCcchhhHH
Q 047845 1326 EDGHSVPVAAGAGDTNICGGIIQLYWDKILGRC-LDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSK 1404 (1801)
Q Consensus 1326 ~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~-ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPtLIALeTdp~~~Ir~ 1404 (1801)
. +--...++||=..|++.| .+.+..||-.++.++....--|+..=+.|.|+. .|.-|.++.++.
T Consensus 360 ~--------------~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy-~Li~d~~r~~~~ 424 (1048)
T KOG2011|consen 360 K--------------DKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVY-SLIYDSNRRVAV 424 (1048)
T ss_pred c--------------hHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHH-HHHhccCcchHH
Confidence 0 011248899999999999 455556666666665555669999999988654 566666676666
Q ss_pred HHHHHH-HHHHhhChhh
Q 047845 1405 LAHHLL-MNMNEKYPAF 1420 (1801)
Q Consensus 1405 ~A~~lL-~~L~eKyes~ 1420 (1801)
-|-..+ ..+++.+..+
T Consensus 425 aa~~fl~~k~~~~~a~~ 441 (1048)
T KOG2011|consen 425 AAGEFLYKKLFERVANS 441 (1048)
T ss_pred HHHHHHHHHhhccccch
Confidence 665554 4566666555
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=88.95 E-value=0.93 Score=45.85 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=72.7
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHH---H-----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-HH-
Q 047845 881 AVEGRFCDSAISVREAALELLAGILL---H-----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-TT- 950 (1801)
Q Consensus 881 ~I~~rl~DsS~sVRDAAldLIGkI~~---~-----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-~~- 950 (1801)
.+...+.|.++.+|+.|+..++.+.. . +....++.+.+-+.|....||+.++..|..++...+..... ..
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 90 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEA 90 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHC
Confidence 34446778889999999999999432 1 34478999999999999999999999999998765431111 11
Q ss_pred -HHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 951 -ACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 951 -i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+...++..+++.+..+++.|..+|..+
T Consensus 91 g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 91 GGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred CChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 235566777787788999888887654
No 44
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=88.87 E-value=3.1 Score=52.75 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAER 919 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~eR 919 (1801)
+..++..|.++...||.-+.++|+.+ ..+.....+..-+.|..|.||-++++++|... ..-|+.+..-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i--------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~----~~~~~~L~~~ 155 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWL--------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR----HDPGPALEAA 155 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcC--------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc----cChHHHHHHH
Confidence 78889999999999999999999853 45667777778889999999999999999711 1235667777
Q ss_pred hCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHH
Q 047845 920 IKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFY 975 (1801)
Q Consensus 920 i~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~ 975 (1801)
+.|....||..+++.+..+-. ++ .+..+..-..|+++.|+.-|...+-
T Consensus 156 L~d~d~~Vra~A~raLG~l~~--~~------a~~~L~~al~d~~~~VR~aA~~al~ 203 (410)
T TIGR02270 156 LTHEDALVRAAALRALGELPR--RL------SESTLRLYLRDSDPEVRFAALEAGL 203 (410)
T ss_pred hcCCCHHHHHHHHHHHHhhcc--cc------chHHHHHHHcCCCHHHHHHHHHHHH
Confidence 889999999999999998742 22 2222334478999999999988873
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.19 E-value=2 Score=43.55 Aligned_cols=75 Identities=28% Similarity=0.247 Sum_probs=59.6
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC-ccccC-chhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 047845 828 QNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVD-PEVLC-DKRVQLAVEGRFCDSAISVREAALELLAG 903 (1801)
Q Consensus 828 ~~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~D-PsIL~-~~~Vq~~I~~rl~DsS~sVRDAAldLIGk 903 (1801)
......+.++.|++.+|.+++++.+.||-=|..+|.+|+..= ..+|. -+.|=.++.+.+.|+.++||.+| +++-+
T Consensus 17 l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 17 LGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDR 93 (97)
T ss_pred chHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHH
Confidence 334478889999999999999999999999999999987653 24443 46677788888889999999998 55554
No 46
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=87.59 E-value=73 Score=41.62 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=41.9
Q ss_pred CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCChhh
Q 047845 874 CDKRVQLAVEGRFCDSAISVREAALELLAGILLH---------ILMLYFVKVAERIKDTGVSV 927 (1801)
Q Consensus 874 ~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---------L~~~yy~~I~eRi~D~GVsV 927 (1801)
.++.|-+-|..-+.|.+---|.-+.+++.||.++ +++.||+.|+..+....++|
T Consensus 518 g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~ 580 (975)
T COG5181 518 GDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV 580 (975)
T ss_pred CChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc
Confidence 4566666666789999989999999999994322 89999999999997666554
No 47
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=87.47 E-value=1.7 Score=41.97 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=58.6
Q ss_pred hhc-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCC-
Q 047845 884 GRF-CDSAISVREAALELLAGILLHILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVND- 961 (1801)
Q Consensus 884 ~rl-~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~D- 961 (1801)
+.+ .|.++.||..|+..+|++.. .+..+.|.+.+.|+...||..|+.-|..|= -.++...|+..+.|
T Consensus 6 ~~l~~~~~~~vr~~a~~~L~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 6 QLLQNDPDPQVRAEAARALGELGD---PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAIPALIKLLQDD 74 (88)
T ss_dssp HHHHTSSSHHHHHHHHHHHHCCTH---HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTHHHHHHHHTC-
T ss_pred HHHhcCCCHHHHHHHHHHHHHcCC---HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHHHcCC
Confidence 455 79999999999999998432 356777778889999999999999998761 12233344444544
Q ss_pred CchhHHHHHHHHH
Q 047845 962 DESSIQDLVCKTF 974 (1801)
Q Consensus 962 EEdsIkdLa~~tf 974 (1801)
++..|+..|.+.|
T Consensus 75 ~~~~vr~~a~~aL 87 (88)
T PF13646_consen 75 DDEVVREAAAEAL 87 (88)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhc
Confidence 4557788887765
No 48
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=86.66 E-value=1.4e+02 Score=40.75 Aligned_cols=136 Identities=17% Similarity=0.148 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH---HH-HHHH-HHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL---LH-ILML-YFV 914 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~---~~-L~~~-yy~ 914 (1801)
+|.+.+-+.++.+.+|.-||+-++.| .++.|+.. +-..|.+++.|.+|.||..|.--|+|+. .+ +.+. ...
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l--~~~el~~~--~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~ 169 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLL--RVKELLGN--IIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLID 169 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhc--ChHHHHHH--HHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHH
Confidence 47888999999999999999999987 55666543 6778889999999999999999999943 23 3334 556
Q ss_pred HHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccC--CCchhHHHHHHHHHHhhccCCC
Q 047845 915 KVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVN--DDESSIQDLVCKTFYEFWFEEP 982 (1801)
Q Consensus 915 ~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~--DEEdsIkdLa~~tf~elWF~p~ 982 (1801)
.+-+-..|+..-|---|+--+++||.+ +...=....| ..+.+++ ..+ -+-+.++.+..+....+.
T Consensus 170 ~l~~l~~D~dP~Vi~nAl~sl~~i~~e-~a~~~~~~~~-~~i~~l~~~~~~-~~~~~~~~~~le~L~~~~ 236 (757)
T COG5096 170 ILKELVADSDPIVIANALASLAEIDPE-LAHGYSLEVI-LRIPQLDLLSLS-VSTEWLLLIILEVLTERV 236 (757)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhchh-hhhhHHHHHH-HHhhhccchhhh-hhHHHHHHHHHHHHHccC
Confidence 667777899999999999999999877 2211122223 4455554 333 223455555555554443
No 49
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.27 E-value=1.5e+02 Score=40.80 Aligned_cols=456 Identities=16% Similarity=0.203 Sum_probs=208.9
Q ss_pred ChhhhHHHHHHHHHHhhhCCCC-cch-HHHHHHhhcccCCCchhHHHHHHHHHHhhccCCCCCCcccccCC-----CCCc
Q 047845 924 GVSVRKRAIKIIRDMCTSNTNF-TES-TTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGD-----GSSV 996 (1801)
Q Consensus 924 GVsVRKRvIKilkdIy~~~p~~-~~~-~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d-----~ss~ 996 (1801)
+--||+-+.|.+.-+....+++ ++. ..++-.+|.|..+.||+|+--+..++-.+.-.-...-. ...| .+..
T Consensus 345 SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~--~~~d~d~~e~~g~ 422 (1233)
T KOG1824|consen 345 SWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIE--VLADNDAMEQGGT 422 (1233)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcc--cccCchhhhccCC
Confidence 4559999999998887665542 222 23467899999999999999999998887654221100 0001 1111
Q ss_pred hHHHHHHHHHHHHHHhcCCChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHhh--------
Q 047845 997 PLEVAKKTEQIVEMSRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQV-------- 1068 (1801)
Q Consensus 997 ~~~~~~k~~~iv~vl~~~~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~l-------- 1068 (1801)
+....-...+.. .++..+.+.+. .++.| ....-+..+....+-.=++|.+++..+
T Consensus 423 ~s~~~~L~~~~~----------~iVkai~~qlr----~ks~k---t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l 485 (1233)
T KOG1824|consen 423 PSDLSMLSDQVP----------LIVKAIQKQLR----EKSVK---TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSL 485 (1233)
T ss_pred ccchHHHHhhhH----------HHHHHHHHHHh----hcccc---chhhHHHHHHHHHHhCcchhhhcccccchhhhhhc
Confidence 100000111111 11222222111 01111 000000111111111112233332221
Q ss_pred ccccc-ccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccChH------HHHHhhccee-eeccC-CC
Q 047845 1069 EEMNN-EGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDNR------VVAKFLESVI-FIIDA-LP 1139 (1801)
Q Consensus 1069 ee~~~-~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~~------~~~~il~~Vv-~i~~~-Lp 1139 (1801)
.+.++ +......+.+ +-.+++...|.-|.| |+..|-|-+.....+. +.+.+....+ +|-+. +|
T Consensus 486 ~DkSsss~~ki~~L~f--l~~~L~s~~p~~fhp------~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~ 557 (1233)
T KOG1824|consen 486 NDKSSSSNLKIDALVF--LYSALISHPPEVFHP------HLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPP 557 (1233)
T ss_pred CCccchHHHHHHHHHH--HHHHHhcCChhhccc------chhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCC
Confidence 11111 0000011112 234566667777766 5666666655432221 1111222222 22221 21
Q ss_pred -----hhHHHHHHHHHHHHH-hccChHHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHhhhcCCC------------
Q 047845 1140 -----SSVIEELEQDLKHMI-VRHSFLTVVHACIKCLCSVSKISGKGL-STVEHLILVFFKYLDSHNP------------ 1200 (1801)
Q Consensus 1140 -----~~fl~eLe~dL~~lI-~k~~~~~vv~acv~CL~~l~~~~~~~~-~~v~~~i~~~~~~L~~~~~------------ 1200 (1801)
+.+..++=..-++.+ .+-..+.|=..+++|++.+...++..- .....++..|...|++..+
T Consensus 558 ~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 558 SSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEITRLTAVKALTLIA 637 (1233)
T ss_pred ccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 345555555555444 333344555788999999987766332 3445666666666654321
Q ss_pred ------CChhhhhhHHHHHHHHHh-hcccc----------ccccccCccc---hhhhHHHHHHHhhcCChHHHHHHHHHH
Q 047845 1201 ------DSKQVVGRSLFCLGLLIR-YGSSL----------LTTSYEKNID---IVSNLNLFKRYLRMEDFSVKVRSLQAL 1260 (1801)
Q Consensus 1201 ------d~~~~l~R~L~~lGll~R-y~~~~----------~~~~~~k~~~---v~~~l~lf~~~~~~~d~~iR~~AL~aL 1260 (1801)
+-.+.+...+-.++.|+| +-... +....+..+. ++.++.-+.-.....|..+-..|+..|
T Consensus 638 ~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L 717 (1233)
T KOG1824|consen 638 MSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFL 717 (1233)
T ss_pred hccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 112333344444444443 21110 0000001111 111111111111112344555688899
Q ss_pred HHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccccccccCCC-
Q 047845 1261 GFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGD- 1339 (1801)
Q Consensus 1261 G~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~D- 1339 (1801)
..+.+..|.-+.. ....+++.++.--.++-+...+|..+..||+.-=..-.....-.+- -.... -||-++.+|
T Consensus 718 ~tl~~~~ps~l~~-~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l-~s~lt----~PV~~~~~~~ 791 (1233)
T KOG1824|consen 718 TTLAIIQPSSLLK-ISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISL-LSLLT----APVYEQVTDG 791 (1233)
T ss_pred HHHHhcccHHHHH-HhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHH-HHHHc----CCcccccccc
Confidence 9999999985532 2344555554321223455567888888886432111110000000 00000 011111110
Q ss_pred --------c------------chHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCcccce-eeecccCc
Q 047845 1340 --------T------------NICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPY-LIALETDP 1398 (1801)
Q Consensus 1340 --------s------------gv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPt-LIALeTdp 1398 (1801)
. ..+.+++.++..++.. =..++.++..|+-.++-+=|.-..-|..-+|+ +|---.+|
T Consensus 792 l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s--~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp 869 (1233)
T KOG1824|consen 792 LHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS--PKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSP 869 (1233)
T ss_pred hhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC--CCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCC
Confidence 0 0112456666655554 35567788888888888877777777665554 44445689
Q ss_pred chhhHHHHHHHHHHHH
Q 047845 1399 QEVNSKLAHHLLMNMN 1414 (1801)
Q Consensus 1399 ~~~Ir~~A~~lL~~L~ 1414 (1801)
+..+...|-.-|-.+.
T Consensus 870 ~edvksAAs~ALGsl~ 885 (1233)
T KOG1824|consen 870 SEDVKSAASYALGSLA 885 (1233)
T ss_pred hHHHHHHHHHHhhhhh
Confidence 9988888887776544
No 50
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.39 E-value=8.5 Score=53.04 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHH----cCCChhHHHHHHHHHHHHHhcCccCCCcccceeeeccc-CcchhhHHHHHHHHHHHHhhChh
Q 047845 1345 GIIQLYWDKILGRC----LDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALET-DPQEVNSKLAHHLLMNMNEKYPA 1419 (1801)
Q Consensus 1345 ~ivQrYL~~IL~~~----ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPtLIALeT-dp~~~Ir~~A~~lL~~L~eKyes 1419 (1801)
+++-+|.+=|.+.| +.+++.++.+|.-.++-..=----==..-.|.||...+ +|+|.||.-+---+-++.=.||.
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 59999999999999 88899999999777664410000000111355665444 77777776665555666666666
Q ss_pred hhh
Q 047845 1420 FFE 1422 (1801)
Q Consensus 1420 ~v~ 1422 (1801)
+++
T Consensus 995 lie 997 (1251)
T KOG0414|consen 995 LIE 997 (1251)
T ss_pred ccc
Confidence 666
No 51
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.91 E-value=1.6e+02 Score=39.89 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=71.9
Q ss_pred HHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHH--HHHHHHHHHHHH
Q 047845 842 LLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILL--HILMLYFVKVAE 918 (1801)
Q Consensus 842 ~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~--~L~~~yy~~I~e 918 (1801)
.|-+=|.++---+=.-||-+|+.|... .. -+++-.-|++-+.-..+-||.=|+=-.-| |.. .+.+.|...=..
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~--Em--ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~ 186 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSP--EM--ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRK 186 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCH--HH--hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHH
Confidence 333334444455668888888888532 11 13344556656667889999877777777 543 389999999999
Q ss_pred HhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 919 RIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 919 Ri~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
++.|.-.||==..+.++-+||...|+
T Consensus 187 lL~ek~hGVL~~~l~l~~e~c~~~~~ 212 (866)
T KOG1062|consen 187 LLCEKHHGVLIAGLHLITELCKISPD 212 (866)
T ss_pred HHhhcCCceeeeHHHHHHHHHhcCHH
Confidence 99999999999999999999999876
No 52
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.76 E-value=4.3 Score=52.62 Aligned_cols=93 Identities=23% Similarity=0.261 Sum_probs=75.1
Q ss_pred HHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH----H-HH------H--HH
Q 047845 843 LLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG----I-LL------H--IL 909 (1801)
Q Consensus 843 LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk----I-~~------~--L~ 909 (1801)
+...-.+.-..|||.|+++|-++-| -.=|...-.+++++ .+.|+--.||-|||.||.- . .+ + +.
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e--g~kL~~~~Y~~A~~-~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE--GFKLSKACYSRAVK-HLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc--cccccHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 5555566678999999999988877 23333444678876 8999999999999999864 1 11 1 88
Q ss_pred HHHHHHHHHHhCCCChhhhHHHHHHHHHH
Q 047845 910 MLYFVKVAERIKDTGVSVRKRAIKIIRDM 938 (1801)
Q Consensus 910 ~~yy~~I~eRi~D~GVsVRKRvIKilkdI 938 (1801)
+.-|.+||+.+.|-+++||=-|-|.+.++
T Consensus 280 D~aF~~vC~~v~D~sl~VRV~AaK~lG~~ 308 (823)
T KOG2259|consen 280 DAAFSSVCRAVRDRSLSVRVEAAKALGEF 308 (823)
T ss_pred HHHHHHHHHHHhcCceeeeehHHHHhchH
Confidence 89999999999999999999999999887
No 53
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.56 E-value=12 Score=47.12 Aligned_cols=70 Identities=17% Similarity=0.364 Sum_probs=47.9
Q ss_pred hhhhccccccccChHHHHHhhcceeeeccCCChhHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHHhhccC
Q 047845 1108 VITLQPYLKSQVDNRVVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRH---SFLTVVHACIKCLCSVSKISG 1178 (1801)
Q Consensus 1108 i~~L~PYL~~~~~~~~~~~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~---~~~~vv~acv~CL~~l~~~~~ 1178 (1801)
+..+-|-|-+..+...++ +++...-++.+++.+-|-.+-.|+.+.+.+. ....|=++||-||.+|++.++
T Consensus 408 I~~i~~~Ilt~D~~~~~~-~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 408 IVNISPLILTADEPRAVA-VIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHHhhHHhcCcchHHHH-HHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 455556665532222222 4444455778899999988889999887653 234577899999999998887
No 54
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.49 E-value=2.8 Score=54.57 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=66.2
Q ss_pred CChhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC-cchHHHHHHhhcccCCCch
Q 047845 889 SAISVREAALELLAGILLH---ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF-TESTTACIEIISRVNDDES 964 (1801)
Q Consensus 889 sS~sVRDAAldLIGkI~~~---L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~-~~~~~i~~~iL~Rv~DEEd 964 (1801)
.++.++.-|=.+|.|...+ |.++-++.+.+-+-|.-+.|||-|||=|-.+|-.+|++ +++.++...||. -||.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~---tdd~ 110 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ---TDDP 110 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT------H
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh---cccH
Confidence 4567777888899994333 89999999999999999999999999999999999885 667777777776 4444
Q ss_pred hHHHHHHHHHHhhccC
Q 047845 965 SIQDLVCKTFYEFWFE 980 (1801)
Q Consensus 965 sIkdLa~~tf~elWF~ 980 (1801)
.-.+.|.+.|.++|=.
T Consensus 111 ~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQ 126 (556)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7889999999998854
No 55
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=82.45 E-value=9.9 Score=49.38 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=91.6
Q ss_pred hhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHH---HHHhhcCCCChhHHHHHHHHHHHHH---
Q 047845 832 FSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQL---AVEGRFCDSAISVREAALELLAGIL--- 905 (1801)
Q Consensus 832 f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~---~I~~rl~DsS~sVRDAAldLIGkI~--- 905 (1801)
|--.+-++|..||...++...+||-.|..+.-.|+..=| .-.|.. ....-+.+++=.=..|+|+++|-+.
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~----~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a 285 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS----AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA 285 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC----cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 333445666778888889999999988888888775432 222221 1112233334455679999999732
Q ss_pred HH----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCc
Q 047845 906 LH----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDE 963 (1801)
Q Consensus 906 ~~----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEE 963 (1801)
+. .....-+.|.+.+-|+=+.|||-.++++..++..-.+ +.+..+.-++|.-+.|++
T Consensus 286 p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN-~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 286 PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN-PDIQKIIPTLLDALADPS 346 (569)
T ss_pred hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhcCcc
Confidence 11 5677889999999999999999999999999866544 557777788999999977
No 56
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.40 E-value=2.1e+02 Score=38.46 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=54.9
Q ss_pred cchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCc-hhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 047845 829 NNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCD-KRVQLAVEGRFCDSAISVREAALELLAG 903 (1801)
Q Consensus 829 ~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~-~~Vq~~I~~rl~DsS~sVRDAAldLIGk 903 (1801)
.|.++.+|-.=+-.||.+ ++..+-||-||-=||-.+..+-|.+..- .-.++.|+ -|-|..--|=-||..||.-
T Consensus 140 ~re~~ea~~~DI~KlLvS-~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~-LL~D~~~gv~ta~~sLi~~ 213 (938)
T KOG1077|consen 140 SREMAEAFADDIPKLLVS-GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVH-LLDDQHMGVVTAATSLIEA 213 (938)
T ss_pred cHhHHHHhhhhhHHHHhC-CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHH-HhCccccceeeehHHHHHH
Confidence 578888885555455544 5678899999999999999999998874 44666664 6667776777777777765
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=81.20 E-value=2.2 Score=33.76 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHH
Q 047845 881 AVEGRFCDSAISVREAALELLAGI 904 (1801)
Q Consensus 881 ~I~~rl~DsS~sVRDAAldLIGkI 904 (1801)
.+.+.+.|+++.||++|+.-+|.|
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHH
Confidence 344566677777777776666663
No 58
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.55 E-value=2.7e+02 Score=39.33 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH-------HHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH-------ILML 911 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~-------L~~~ 911 (1801)
|..|+..|.++.-.+|+.|=|.+..+--.-|.+..- .+-.-.=..|.||.-|.=|.-| +..+ .-.+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L------~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPAL------AHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHH------HHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 456777777778888999999999887665521111 1112235668999988777777 3322 2233
Q ss_pred HHHHHHHHh-CCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 912 YFVKVAERI-KDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 912 yy~~I~eRi-~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
.-..|++.+ .-+--+|||..-++.-+|--.-=+ .+-++...-|.+-++++.++.|+.|.-+|..+
T Consensus 80 iks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~-e~WPell~~L~q~~~S~~~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 80 IKSSLLEIIQSETEPSVRHKLADVIAEIARNDLP-EKWPELLQFLFQSTKSPNPSLRESALLILSSL 145 (1075)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHhcCCCcchhHHHHHHHHhh
Confidence 444444444 456778999988866665433212 15788888899999999999999999888765
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.46 E-value=20 Score=47.76 Aligned_cols=129 Identities=16% Similarity=0.246 Sum_probs=85.1
Q ss_pred ChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCC
Q 047845 1249 DFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDG 1328 (1801)
Q Consensus 1249 d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~ 1328 (1801)
..++.-.||.+++++.++.|++| ..++.-.|.+-.. +.-+|.+=|+.+...
T Consensus 292 ~~e~qyvaLrNi~lil~~~p~~~-~~~~~~Ff~kynD---PiYvK~eKleil~~l------------------------- 342 (734)
T KOG1061|consen 292 ESEIQYVALRNINLILQKRPEIL-KVEIKVFFCKYND---PIYVKLEKLEILIEL------------------------- 342 (734)
T ss_pred cchhhHHHHhhHHHHHHhChHHH-HhHhHeeeeecCC---chhhHHHHHHHHHHH-------------------------
Confidence 44888899999999999999944 4446555544322 444554444333331
Q ss_pred ccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH-hcCccCCCcccceeeecccCcchhhHHHHH
Q 047845 1329 HSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVL-RQGLVHPITCVPYLIALETDPQEVNSKLAH 1407 (1801)
Q Consensus 1329 k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~il-rQGLVhP~~cvPtLIALeTdp~~~Ir~~A~ 1407 (1801)
++.+.+|.-+.+..+.|...+.+....|++.|+-+- ++-=. -.||+.|..|..=...++-.-+.
T Consensus 343 -------------a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~cv~~lLell~~~~~yvvqE~~ 407 (734)
T KOG1061|consen 343 -------------ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--NDCVSILLELLETKVDYVVQEAI 407 (734)
T ss_pred -------------hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hhhHHHHHHHHhhcccceeeehh
Confidence 112355557777788888888888888888777652 11111 56888888887766666666777
Q ss_pred HHHHHHHhhChhhh
Q 047845 1408 HLLMNMNEKYPAFF 1421 (1801)
Q Consensus 1408 ~lL~~L~eKyes~v 1421 (1801)
...+++..|||.-.
T Consensus 408 vvi~dilRkyP~~~ 421 (734)
T KOG1061|consen 408 VVIRDILRKYPNKY 421 (734)
T ss_pred HHHHhhhhcCCCch
Confidence 77788888888764
No 60
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=79.38 E-value=2.9 Score=47.30 Aligned_cols=65 Identities=22% Similarity=0.232 Sum_probs=54.9
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHH-H--HHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC
Q 047845 881 AVEGRFCDSAISVREAALELLAGILLH-I--LMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF 945 (1801)
Q Consensus 881 ~I~~rl~DsS~sVRDAAldLIGkI~~~-L--~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~ 945 (1801)
-|.+.+.++.+.||-+|+++|+-+... | =.+..+.|+.-..|+-..+|++|.+++++++.+++++
T Consensus 12 ~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 12 NILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 344577788899999999999985544 2 2479999999999999999999999999999998874
No 61
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=79.28 E-value=25 Score=47.48 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=73.7
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC-cchHHHHHHhhc
Q 047845 880 LAVEGRFCDSAISVREAALELLAGIL-LHILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF-TESTTACIEIIS 957 (1801)
Q Consensus 880 ~~I~~rl~DsS~sVRDAAldLIGkI~-~~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~-~~~~~i~~~iL~ 957 (1801)
++|..=+.|+.+-+|=.|+-.+|.+- ..+...+++.|..++.|+..-|||-|+=.+.+||...++. +.. -.+.-+--
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~-g~~~~l~~ 173 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL-GLIDILKE 173 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc-cHHHHHHH
Confidence 44555688999999999999999954 4599999999999999999999999999999999766552 222 01112223
Q ss_pred ccCCCchhHHHHHHHHHHhh
Q 047845 958 RVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 958 Rv~DEEdsIkdLa~~tf~el 977 (1801)
-+.|++.-|.--|.-+|.++
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 174 LVADSDPIVIANALASLAEI 193 (757)
T ss_pred HhhCCCchHHHHHHHHHHHh
Confidence 34577777777777777665
No 62
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.06 E-value=10 Score=38.55 Aligned_cols=77 Identities=21% Similarity=0.102 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCCh
Q 047845 855 RAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAGILLH-------ILMLYFVKVAERIKDTGV 925 (1801)
Q Consensus 855 RSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------L~~~yy~~I~eRi~D~GV 925 (1801)
|--+|-||+.+...=+.-.. -+.+..-|..+|.|+.+-||-+|.+-+..|... ...+.|+.++..+.|+-.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 55667777776333332222 344566677899999999999999999995432 356778888999999999
Q ss_pred hhhHHH
Q 047845 926 SVRKRA 931 (1801)
Q Consensus 926 sVRKRv 931 (1801)
+||.-+
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999877
No 63
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=79.01 E-value=12 Score=50.29 Aligned_cols=126 Identities=14% Similarity=0.148 Sum_probs=96.6
Q ss_pred ChhHHhHHHHHHHHHHhcCccccCc--hhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH--HHHHHHHHHHHHhCCCCh
Q 047845 851 SPIIRAKALRAVSIIVEVDPEVLCD--KRVQLAVEGRFCDSAISVREAALELLAG-ILLH--ILMLYFVKVAERIKDTGV 925 (1801)
Q Consensus 851 s~~vRSKALK~Ls~ive~DPsIL~~--~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~--L~~~yy~~I~eRi~D~GV 925 (1801)
+++||+-++=.|+.+.=+|-.+..+ |..-+-++ .-....||.-.|=-+|- ...+ .++.|.++|..|+.|+.+
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe---~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELE---YNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchH
Confidence 5688999999999888777776652 33222222 34557889888888888 5666 899999999999999999
Q ss_pred hhhHHHHHHHHHHhhhCCCCcc-hHHHHHHhhcccCCCchhHHHHHHHHHHhhccCC
Q 047845 926 SVRKRAIKIIRDMCTSNTNFTE-STTACIEIISRVNDDESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 926 sVRKRvIKilkdIy~~~p~~~~-~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p 981 (1801)
-|||..|-+|-.+..+ +|-+ .-.+.-|++.-.-|+-+-|+.+|.=.|-++.-..
T Consensus 1021 iVRrqt~ilL~rLLq~--~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQF--GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHHHHHHHHHHHHHhh--hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhc
Confidence 9999999988877643 3322 2345678888889988899999998888887654
No 64
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=78.77 E-value=14 Score=37.20 Aligned_cols=84 Identities=18% Similarity=0.124 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCc-cccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDP-EVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAE 918 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DP-sIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~e 918 (1801)
++.++..|.++-+.+|+.||--|..+++.-. .+...+.|......-+.|+-+=|==+|+..++-+....-....+.+++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 5677888899999999999999999999988 788888888888889999999999999888887333333456666666
Q ss_pred HhCCC
Q 047845 919 RIKDT 923 (1801)
Q Consensus 919 Ri~D~ 923 (1801)
.+.|.
T Consensus 85 ~y~~~ 89 (92)
T PF10363_consen 85 EYADP 89 (92)
T ss_pred HHhCc
Confidence 66664
No 65
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.80 E-value=6.6 Score=55.60 Aligned_cols=144 Identities=18% Similarity=0.222 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHhcCCC---hhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH-H---
Q 047845 835 GFDKILHLLLVSLRENS---PIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILL-H--- 907 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s---~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~-~--- 907 (1801)
-++.|-+.+.+.|.... -.++.+.-.-|-.+....|.+|.. |-.-+..-|.=.-..||--|+.|+|++.. +
T Consensus 216 ~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~--vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~ 293 (1266)
T KOG1525|consen 216 LEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLA--VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQ 293 (1266)
T ss_pred hchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHH--HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhh
Confidence 34566666666665443 356777777788888888888865 55566667777778999999999999433 2
Q ss_pred HH---HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHH---HHHHhhccC
Q 047845 908 IL---MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVC---KTFYEFWFE 980 (1801)
Q Consensus 908 L~---~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~---~tf~elWF~ 980 (1801)
+. +.-|..-+-|+.|-.+.||=-+++..++++..+|+..+-..+...+=.|-.|+++-|+..+. =.+.+.|..
T Consensus 294 l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~ 372 (1266)
T KOG1525|consen 294 LSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLV 372 (1266)
T ss_pred hcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhh
Confidence 44 23466667899999999999999999999999988655555555555577888877665532 224555553
No 66
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=77.38 E-value=3.9 Score=32.44 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhc
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEV 868 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~ 868 (1801)
++..++..+.++.+.||.-|.+||+.|.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999999863
No 67
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.88 E-value=25 Score=46.38 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhC-CCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHH
Q 047845 909 LMLYFVKVAERIK-DTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQ 967 (1801)
Q Consensus 909 ~~~yy~~I~eRi~-D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIk 967 (1801)
..++-++|+.-+. +.-||||+||+-+|--||.+ +....|-..||+=+.--|-+||
T Consensus 366 vK~h~d~Ii~sLkterDvSirrravDLLY~mcD~----~Nak~IV~elLqYL~tAd~sir 421 (938)
T KOG1077|consen 366 VKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV----SNAKQIVAELLQYLETADYSIR 421 (938)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHhch----hhHHHHHHHHHHHHhhcchHHH
Confidence 3456788999998 99999999999999999965 3455566666666655444443
No 68
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.79 E-value=3.1e+02 Score=37.38 Aligned_cols=115 Identities=19% Similarity=0.093 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHH
Q 047845 1290 IRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTA 1369 (1801)
Q Consensus 1290 ~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~A 1369 (1801)
++.|...|..|-+|+.+-|-+..+-.- -.--|++ |.-+..=.+|...|.....-.+..||-+|
T Consensus 424 pdsKe~~L~~LCefIEDce~~~i~~rI-------LhlLG~E----------gP~a~~Pskyir~iyNRviLEn~ivRaaA 486 (865)
T KOG1078|consen 424 PDSKERGLEHLCEFIEDCEFTQIAVRI-------LHLLGKE----------GPKAPNPSKYIRFIYNRVILENAIVRAAA 486 (865)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHH-------HHHHhcc----------CCCCCCcchhhHHHhhhhhhhhhhhHHHH
Confidence 445777888888888776653322100 0001122 12223445899999999999999999999
Q ss_pred HHHHHHHHhcCccCCCcccce-eeecccCcchhhHHHHHHHHHHHHhhChhhhh
Q 047845 1370 LKIVEVVLRQGLVHPITCVPY-LIALETDPQEVNSKLAHHLLMNMNEKYPAFFE 1422 (1801)
Q Consensus 1370 l~vl~~ilrQGLVhP~~cvPt-LIALeTdp~~~Ir~~A~~lL~~L~eKyes~v~ 1422 (1801)
+..+.-+. -|=+-|...|+. |.=..-|++..+|++|--.|+.+.++-.....
T Consensus 487 v~alaKfg-~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~~~l~~ 539 (865)
T KOG1078|consen 487 VSALAKFG-AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKDDVLNQ 539 (865)
T ss_pred HHHHHHHh-cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhhhhhcc
Confidence 99999887 333444444433 23344588899999999999998876655444
No 69
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=73.93 E-value=5.4 Score=35.51 Aligned_cols=48 Identities=23% Similarity=0.150 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHH---H----HHHHHHHHHHHHHhCCCChhhhHHHHHHHHHH
Q 047845 891 ISVREAALELLAGIL---L----HILMLYFVKVAERIKDTGVSVRKRAIKIIRDM 938 (1801)
Q Consensus 891 ~sVRDAAldLIGkI~---~----~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdI 938 (1801)
|.||.+|+-.||.+. . .+..+.++.+...+.|+.-.||..++.-|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 579999999999632 1 16778888889999999999999998876543
No 70
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.63 E-value=14 Score=48.30 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=76.8
Q ss_pred HHHHHHHhc-CCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHH-----
Q 047845 840 LHLLLVSLR-ENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYF----- 913 (1801)
Q Consensus 840 L~~LL~~L~-~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy----- 913 (1801)
|+.|..-|+ +....||--..|||.+|+..-.+.=.-+..-.++.-.+.|+|.+||=|+||+|.+|...=+-+|+
T Consensus 264 l~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~ 343 (1005)
T KOG1949|consen 264 LKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPM 343 (1005)
T ss_pred HHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccH
Confidence 444444454 45568999999999999865433333344555777778899999999999999997665334444
Q ss_pred HHHHHHhCCCChhhhHHHHHHHHHHhhh
Q 047845 914 VKVAERIKDTGVSVRKRAIKIIRDMCTS 941 (1801)
Q Consensus 914 ~~I~eRi~D~GVsVRKRvIKilkdIy~~ 941 (1801)
+.|+.|+.-..+-|=||.+.++--+|.-
T Consensus 344 d~~l~~L~~d~~~v~rr~~~li~~s~lP 371 (1005)
T KOG1949|consen 344 DHILVRLETDSRPVSRRLVSLIFNSFLP 371 (1005)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhhcC
Confidence 5678899999999999999999888854
No 71
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.65 E-value=25 Score=46.05 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=78.7
Q ss_pred hcCCC-ChhHHHHHHHHHHHHHHH------HH-------HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcc-hH
Q 047845 885 RFCDS-AISVREAALELLAGILLH------IL-------MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTE-ST 949 (1801)
Q Consensus 885 rl~Ds-S~sVRDAAldLIGkI~~~------L~-------~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~-~~ 949 (1801)
.|.|+ |--.|-+.++..|.+..+ .. ....+.+.||+.|+..-+|-+|+.-+..||..+.-+++ +.
T Consensus 306 ~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ 385 (1128)
T COG5098 306 ELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRH 385 (1128)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHH
Confidence 34554 458899999999984322 22 23566788999999999999999999999999887755 45
Q ss_pred HHHHHhhcccCCCchhHHHHHHHHHHhhccCC
Q 047845 950 TACIEIISRVNDDESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 950 ~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p 981 (1801)
+++.-.+||++|.-.-||.-|.+.|-.+....
T Consensus 386 ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 386 EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 67777889999999999999999999999864
No 72
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=69.33 E-value=33 Score=40.94 Aligned_cols=102 Identities=23% Similarity=0.307 Sum_probs=68.9
Q ss_pred HHHHHHHhcC-CChhHHhHHHHHHHHHHhcCc--cccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH--HH---HHHH
Q 047845 840 LHLLLVSLRE-NSPIIRAKALRAVSIIVEVDP--EVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL--LH---ILML 911 (1801)
Q Consensus 840 L~~LL~~L~~-~s~~vRSKALK~Ls~ive~DP--sIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~--~~---L~~~ 911 (1801)
|+.++..|.. .-|.++.+|+-.++....... .+...-..-..|...+.|+++.||+-|+..+..+. .. .+..
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 3556666664 468899999999988654332 33333344567777888999999999999888722 21 5566
Q ss_pred HHHHHHHHhCCCCh--hhhHHHHHHHHHHhhh
Q 047845 912 YFVKVAERIKDTGV--SVRKRAIKIIRDMCTS 941 (1801)
Q Consensus 912 yy~~I~eRi~D~GV--sVRKRvIKilkdIy~~ 941 (1801)
|.+.+|+.+..... .|.=-.+|+|..+...
T Consensus 94 ~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~ 125 (254)
T PF04826_consen 94 YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT 125 (254)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC
Confidence 88888876555432 4556678888887543
No 73
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.38 E-value=16 Score=47.75 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG 903 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk 903 (1801)
++-|..|..++.+.-.-||-||+++|..|..- +--+++-..+|..++-|.|+-||+++.+|++.
T Consensus 409 ~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~---l~i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 409 VRALDFLVDMFNDEIEVVRLKAIFALTMISVH---LAIREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH---heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 56677888899999999999999999999765 33367777888899999999999999999997
No 74
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=66.56 E-value=3.6 Score=47.74 Aligned_cols=49 Identities=29% Similarity=0.742 Sum_probs=37.6
Q ss_pred CCccccccccccccchhhhhcc-cc-ccccccccccccccCCCCCCcchhhhh
Q 047845 658 YPKDLCCVCLDGRVEKRVFMCQ-GC-QRLFHADCLGVREHEVPNRGWNCQLCL 708 (1801)
Q Consensus 658 ~~~~l~~~~l~~~~~~lv~~~~-g~-~r~~~~~~l~~~~~e~~~~~w~~~~c~ 708 (1801)
+-+.+.|.|-...-..||.|++ .| +.|||..|+|.++- |-..|.|.-|-
T Consensus 218 e~e~lYCfCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~p--PKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYCFCQQVSYGQMVACDNANCKREWFHLECVGLKEP--PKGKWYCPECK 268 (271)
T ss_pred cCceeEEEecccccccceecCCCCCchhheeccccccCCC--CCCcEeCHHhH
Confidence 4456788888777788999982 45 78999999998643 44579998884
No 75
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=66.31 E-value=28 Score=41.70 Aligned_cols=96 Identities=25% Similarity=0.301 Sum_probs=60.5
Q ss_pred HHhcCCChhHHhHHHHHHHHHHhcCc-cccCchhHHH---HHHhhcCCCChhHHHHHHHHHHHHHHH-----HHHHHHHH
Q 047845 845 VSLRENSPIIRAKALRAVSIIVEVDP-EVLCDKRVQL---AVEGRFCDSAISVREAALELLAGILLH-----ILMLYFVK 915 (1801)
Q Consensus 845 ~~L~~~s~~vRSKALK~Ls~ive~DP-sIL~~~~Vq~---~I~~rl~DsS~sVRDAAldLIGkI~~~-----L~~~yy~~ 915 (1801)
..|.++.+.+|+||+.+|+.+++.=| ..|....|+. -...|+ |+...|..|.-.|..=+..+ .+.+....
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl-~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~ 84 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL-DDHACVQPALKGLLALVKMKNFSPESAVKILRS 84 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh-ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHH
Confidence 34678899999999999999987655 7788877763 334577 56678888844443322111 33344444
Q ss_pred HHHHhCC--CChhhhHHHHHHHHHHhhh
Q 047845 916 VAERIKD--TGVSVRKRAIKIIRDMCTS 941 (1801)
Q Consensus 916 I~eRi~D--~GVsVRKRvIKilkdIy~~ 941 (1801)
|...+.- -.-++|+.+.+|+.-+...
T Consensus 85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~ 112 (262)
T PF14500_consen 85 LFQNVDVQSLPQSTRYAVYQLLDSLLEN 112 (262)
T ss_pred HHHhCChhhhhHHHHHHHHHHHHHHHHH
Confidence 4443332 2334777777777776544
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=64.44 E-value=50 Score=42.13 Aligned_cols=114 Identities=18% Similarity=0.056 Sum_probs=71.9
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047845 841 HLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAERI 920 (1801)
Q Consensus 841 ~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~eRi 920 (1801)
..++..|.+..+.||..|+++|+.+=..+ ....+..-+.|..+.||.+|+.=++.+... +-.+.+..-.
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~~~--------a~~~L~~al~d~~~~VR~aA~~al~~lG~~---~A~~~l~~~~ 218 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPRRL--------SESTLRLYLRDSDPEVRFAALEAGLLAGSR---LAWGVCRRFQ 218 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcccc--------chHHHHHHHcCCCHHHHHHHHHHHHHcCCH---hHHHHHHHHH
Confidence 35566667889999999999998874322 112233457899999999999888773222 1112333335
Q ss_pred CCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHH
Q 047845 921 KDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFY 975 (1801)
Q Consensus 921 ~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~ 975 (1801)
.+.|.-+|.|+..++.-+ ++ .++...|+.-+.|++ ++.-+..++-
T Consensus 219 ~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG 263 (410)
T TIGR02270 219 VLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVG 263 (410)
T ss_pred hccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHH
Confidence 788888998888877665 11 134445555555543 5655555554
No 77
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=62.64 E-value=70 Score=38.88 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=32.8
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHH--HHHH-HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhC
Q 047845 880 LAVEGRFCDSAISVREAALELLAG--ILLH-ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSN 942 (1801)
Q Consensus 880 ~~I~~rl~DsS~sVRDAAldLIGk--I~~~-L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~ 942 (1801)
..|...+.-+.+.||+.|+.-+|- +..+ ++.+|++.+...+......||-.++|.+=|+...+
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~ 95 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTH 95 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 333334444445666666666665 2222 55555555555553335556666666666655554
No 78
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=61.76 E-value=5e+02 Score=34.30 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=52.5
Q ss_pred HHHHHHhcCCCh-hHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---HHHHHHHHH
Q 047845 841 HLLLVSLRENSP-IIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH---ILMLYFVKV 916 (1801)
Q Consensus 841 ~~LL~~L~~~s~-~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---L~~~yy~~I 916 (1801)
+.|++-+....+ -+|.-|+|+|..++...- -++.-+.+...+.|.++++|+|||=--=+.++. -..++....
T Consensus 104 ssiMkD~~~g~~~~~kp~AiRsL~~Vid~~t----v~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~ 179 (898)
T COG5240 104 SSIMKDLNGGVPDDVKPMAIRSLFSVIDGET----VYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNET 179 (898)
T ss_pred HHHHHhhccCCccccccHHHHHHHHhcCcch----hhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHH
Confidence 566777776777 679999999999886532 345677788889999999999997433223222 334444444
Q ss_pred HHHhCC
Q 047845 917 AERIKD 922 (1801)
Q Consensus 917 ~eRi~D 922 (1801)
-+...|
T Consensus 180 qeav~~ 185 (898)
T COG5240 180 QEAVLD 185 (898)
T ss_pred HHHHhh
Confidence 454444
No 79
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=61.12 E-value=60 Score=41.37 Aligned_cols=74 Identities=30% Similarity=0.367 Sum_probs=55.8
Q ss_pred hhhHHHHHHHHHHHhcC-CChhHHhHHHHHHHHHHhcCccccCchh---HHHHHHhhcCCCChh-HHHHHHHHHHHHHHH
Q 047845 833 SRGFDKILHLLLVSLRE-NSPIIRAKALRAVSIIVEVDPEVLCDKR---VQLAVEGRFCDSAIS-VREAALELLAGILLH 907 (1801)
Q Consensus 833 ~~sFd~iL~~LL~~L~~-~s~~vRSKALK~Ls~ive~DPsIL~~~~---Vq~~I~~rl~DsS~s-VRDAAldLIGkI~~~ 907 (1801)
-+.|+.||-.++..|++ .....|.-|+|.|..+++.-|..|.+.. |++.++ ..+|+-.- ||.|+=|..--..++
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~las~ 402 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE-AAKDSQDEVMRVAEEDCLTTLASH 402 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH-HHhCCchhHHHHHHHHHHHHHHhh
Confidence 37799999999999998 7788999999999999999999987543 455554 77888884 455544433324444
No 80
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=61.01 E-value=70 Score=39.20 Aligned_cols=110 Identities=18% Similarity=0.198 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVA 917 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~ 917 (1801)
..+..++..+.+....+|..|...++.+ ....+-..+...+.|.++.||++|++-+|++-.. +-++.+.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~--------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~---~a~~~li 111 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL--------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDP---EAVPPLV 111 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh--------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh---hHHHHHH
Confidence 4567788888888999999999885554 2355666667799999999999999999984332 3344444
Q ss_pred HHhC-CCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhH
Q 047845 918 ERIK-DTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSI 966 (1801)
Q Consensus 918 eRi~-D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsI 966 (1801)
..+. |..-.||.++.+-|..+-... .+..++.-++|+..++
T Consensus 112 ~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~ 153 (335)
T COG1413 112 ELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGS 153 (335)
T ss_pred HHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhh
Confidence 4455 899999999999998874332 2556666777766544
No 81
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.77 E-value=5.4e+02 Score=34.04 Aligned_cols=141 Identities=21% Similarity=0.190 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc-CccccC-chhHHHHHHhhcCCCChhHHHHHHHHHHH-H---HHH-
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVEV-DPEVLC-DKRVQLAVEGRFCDSAISVREAALELLAG-I---LLH- 907 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~-DPsIL~-~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I---~~~- 907 (1801)
.-..++--++.++.+.-..||.=|--+|=.|... ..+++. -+.+=.+.-+-..|+-.+||++| +|+-+ | ...
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~ 159 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTES 159 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccc
Confidence 3456777789999999999999998888777543 345555 33444444444559999999998 45555 3 222
Q ss_pred ----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcc---hHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 908 ----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTE---STTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 908 ----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~---~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
-.+.|.+.|.+|+.+.+..+|-=+++-++-++ ..|+++. .+++..++..=..|+-+.|+.+.--++.++
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999887 4566554 356678888888999889998876655543
No 82
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=59.45 E-value=9.6 Score=32.71 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCChhhhHHHHHHH
Q 047845 910 MLYFVKVAERIKDTGVSVRKRAIKII 935 (1801)
Q Consensus 910 ~~yy~~I~eRi~D~GVsVRKRvIKil 935 (1801)
......|..|+.|++++||+-|+.++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 57889999999999999999998763
No 83
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=58.24 E-value=1.5e+02 Score=41.86 Aligned_cols=146 Identities=17% Similarity=0.126 Sum_probs=85.2
Q ss_pred CChhhhhhHHH-HHHHHHhhccccccccccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHH
Q 047845 1201 DSKQVVGRSLF-CLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKI 1279 (1801)
Q Consensus 1201 d~~~~l~R~L~-~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i 1279 (1801)
|+.+.+.|+|. -++-||.||- ..+ .-+-.|+.+-.|+...|..+|..=.+++..+|+==-.-=.++=++.+
T Consensus 589 d~~~~Vkr~Lle~i~~LC~FFG--k~k------sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPL 660 (1431)
T KOG1240|consen 589 DSPPIVKRALLESIIPLCVFFG--KEK------SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPL 660 (1431)
T ss_pred CCchHHHHHHHHHHHHHHHHhh--hcc------cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHH
Confidence 44556666654 3444444331 111 11335666667877889999998888888766321111123346778
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHc
Q 047845 1280 LEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCL 1359 (1801)
Q Consensus 1280 ~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~l 1359 (1801)
+++.|.++.+.- -..+|++|.-.+..+ ..+++ .+-..++.++=...
T Consensus 661 l~Q~ltD~EE~V-iv~aL~~ls~Lik~~-------------------ll~K~--------------~v~~i~~~v~PlL~ 706 (1431)
T KOG1240|consen 661 LQQGLTDGEEAV-IVSALGSLSILIKLG-------------------LLRKP--------------AVKDILQDVLPLLC 706 (1431)
T ss_pred HHHhccCcchhh-HHHHHHHHHHHHHhc-------------------ccchH--------------HHHHHHHhhhhhee
Confidence 999998764322 234565555433200 00011 23345566666778
Q ss_pred CCChhHHHHHHHHHHHHHhcCccCCCccc
Q 047845 1360 DANEEVRQTALKIVEVVLRQGLVHPITCV 1388 (1801)
Q Consensus 1360 s~~~~vr~~Al~vl~~ilrQGLVhP~~cv 1388 (1801)
+++.=+|++++.+|..+.+|==.-=+.|+
T Consensus 707 hPN~WIR~~~~~iI~~~~~~ls~advyc~ 735 (1431)
T KOG1240|consen 707 HPNLWIRRAVLGIIAAIARQLSAADVYCK 735 (1431)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhhhheEE
Confidence 99999999999999999887443345554
No 84
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.10 E-value=1e+02 Score=40.17 Aligned_cols=143 Identities=18% Similarity=0.243 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcccc-C-chhHHHHHHhhcCCCChhHHHHHHHHHHHH-HHH---HH
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVL-C-DKRVQLAVEGRFCDSAISVREAALELLAGI-LLH---IL 909 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL-~-~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI-~~~---L~ 909 (1801)
|-.++.++..-+..+....|--+++-+..+-.+-|.=+ . ...+=..+...+.|+|--|=.-+++|++.| .++ =-
T Consensus 334 ~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~ 413 (675)
T KOG0212|consen 334 YGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL 413 (675)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH
Confidence 44899999999999999999999999999999998544 3 556777777899999999999999999994 332 23
Q ss_pred HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCC
Q 047845 910 MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 910 ~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p 981 (1801)
.+|...+.+++.-.-..++-|.-=|+|.+|.--.- +.+-.....||.|.+|-+ -.+ ...+++-.+.|+.
T Consensus 414 ~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~a-E~IYr~~a~ILe~e~nl~-FAs-tMV~~Ln~iLlTS 482 (675)
T KOG0212|consen 414 RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNA-ERIYRSIADILEREENLK-FAS-TMVQALNTILLTS 482 (675)
T ss_pred HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCH-HHHHHHHHHHHhccccch-HHH-HHHHHHHhhhccc
Confidence 78999999999999999999999999999987644 455555678888866665 333 3446666666664
No 85
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=56.25 E-value=1.3e+02 Score=38.33 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=89.0
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCch---hHH------------HHHH
Q 047845 819 VKKITLALGQNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDK---RVQ------------LAVE 883 (1801)
Q Consensus 819 ~~~i~~~l~~~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~---~Vq------------~~I~ 883 (1801)
..||+++|..+.. .....++..++..|++ +.+...|=|++..++.-.+.+|... .|+ ..+.
T Consensus 254 ~~Wi~KaLv~R~~--~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~ 329 (415)
T PF12460_consen 254 LIWITKALVMRGH--PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLL 329 (415)
T ss_pred HHHHHHHHHHcCC--chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHH
Confidence 4578888766543 4457788888888877 7889999999999997768888742 232 2223
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 884 GRFCDSAISVREAALELLAGILLH--------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 884 ~rl~DsS~sVRDAAldLIGkI~~~--------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
+.+..++..+|.+-+--++.|+.+ -..+..|.+.+.+.=+...||.-++.+++.+..+.|+
T Consensus 330 ~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 330 EGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 345566666777766666554433 4567888899999888888999999999999988755
No 86
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=55.96 E-value=26 Score=48.65 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=77.3
Q ss_pred hhcCCCChhHHHHHHHHHHH-HHHH----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHH----HH
Q 047845 884 GRFCDSAISVREAALELLAG-ILLH----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTAC----IE 954 (1801)
Q Consensus 884 ~rl~DsS~sVRDAAldLIGk-I~~~----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~----~~ 954 (1801)
.|..|..|..|=--++-||- |..+ +.+-|..-|-=-+.|...+||+|++|+|.-+|....+..++...- .|
T Consensus 294 HRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred eecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 48889999999999999999 8765 778899999999999999999999999999998855544432222 44
Q ss_pred hhccc-CCCchhHHHHHHHHHHhhccCC
Q 047845 955 IISRV-NDDESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 955 iL~Rv-~DEEdsIkdLa~~tf~elWF~p 981 (1801)
||.=. -|-+.+|+.....++..+-+..
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~~~~~g 401 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLLLSSSG 401 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHhccc
Confidence 54333 5677799998888888776543
No 87
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=55.84 E-value=1.3e+02 Score=37.31 Aligned_cols=148 Identities=19% Similarity=0.257 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchh----------HHHHHHhhcCCCC---------hhHHHHH
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKR----------VQLAVEGRFCDSA---------ISVREAA 897 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~----------Vq~~I~~rl~DsS---------~sVRDAA 897 (1801)
+.+++.|-+.|...+..+..-+||-|..||.-|..-++..- ..+....|-.+.. ++||-+.
T Consensus 55 ~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 55 QNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 45689999999999999999999999999997764444322 2222222221111 3999999
Q ss_pred HHHHHH-HHH------H--HHH-HHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHH-------HHHhhc---
Q 047845 898 LELLAG-ILL------H--ILM-LYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTA-------CIEIIS--- 957 (1801)
Q Consensus 898 ldLIGk-I~~------~--L~~-~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i-------~~~iL~--- 957 (1801)
++++-. +.. + |.. .++..|..-+.++...+=.+++..+++--+..+.+++.... +.+|..
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 999988 321 1 333 36888999999999999999999999977777777765432 233332
Q ss_pred ccC-CCchhHHHHHHHHHHhhccCCCCC
Q 047845 958 RVN-DDESSIQDLVCKTFYEFWFEEPSG 984 (1801)
Q Consensus 958 Rv~-DEEdsIkdLa~~tf~elWF~p~~~ 984 (1801)
+-. +++..|+++|.+.|..+=-.|..+
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCCCcc
Confidence 211 123489999999999988777654
No 88
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.21 E-value=2.5e+02 Score=36.89 Aligned_cols=239 Identities=18% Similarity=0.146 Sum_probs=119.2
Q ss_pred HHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHHHHHHH--HHHhhhcCCCCCh-hhhhhHHHHHHHHHhhccccccc
Q 047845 1150 LKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILV--FFKYLDSHNPDSK-QVVGRSLFCLGLLIRYGSSLLTT 1226 (1801)
Q Consensus 1150 L~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~--~~~~L~~~~~d~~-~~l~R~L~~lGll~Ry~~~~~~~ 1226 (1801)
+.+++...+ .+|..-|+| +|.|..++...+-..++.. +...|..+....+ ..+.-+.+++.-|||+.+-
T Consensus 157 fi~Ll~s~~-~~v~eQavW---ALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P---- 228 (514)
T KOG0166|consen 157 FIQLLSSPS-ADVREQAVW---ALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP---- 228 (514)
T ss_pred HHHHhcCCc-HHHHHHHHH---HHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC----
Confidence 445555433 456665666 5555555544332222220 1111222222222 2455567899999987641
Q ss_pred cccCc-cchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcc---hhchhhHHHHHHHHhcCCc--------------
Q 047845 1227 SYEKN-IDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPE---HMLEKDIGKILEATLADSS-------------- 1288 (1801)
Q Consensus 1227 ~~~k~-~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~---l~~~~~v~~i~~~~l~~~~-------------- 1288 (1801)
..+ ..+...++.+.+.+...|.+|..-|..+|..+.-..++ .+..-.+...+-..|....
T Consensus 229 --~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 229 --SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred --CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 111 12345667777767788999999999999988755554 2223333333444443221
Q ss_pred ----hhHHH----HHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcC
Q 047845 1289 ----HIRLK----MQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLD 1360 (1801)
Q Consensus 1289 ----~~~lK----~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls 1360 (1801)
+.... ...|..|..+|....+...++.. -|... -+..|.-+ -+=+-+---.++.++++.-+
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA-cW~iS---------NItAG~~~-qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA-CWTIS---------NITAGNQE-QIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH-HHHHH---------HhhcCCHH-HHHHHHHcccHHHHHHHHhc
Confidence 11111 11233333333321111111100 01000 01111110 01111222345556666666
Q ss_pred CChhHHHHHHHH------------HHHHHhcCccCCCcccceeeecccCcchhhHHHHHHHHHHHHh
Q 047845 1361 ANEEVRQTALKI------------VEVVLRQGLVHPITCVPYLIALETDPQEVNSKLAHHLLMNMNE 1415 (1801)
Q Consensus 1361 ~~~~vr~~Al~v------------l~~ilrQGLVhP~~cvPtLIALeTdp~~~Ir~~A~~lL~~L~e 1415 (1801)
.+...|.-|.-. +..+++|| ||+.|..|-+.++..+-..+...+..|.+
T Consensus 376 ~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g------iI~plcdlL~~~D~~ii~v~Ld~l~nil~ 436 (514)
T KOG0166|consen 376 AEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG------IIKPLCDLLTCPDVKIILVALDGLENILK 436 (514)
T ss_pred cchHHHHHHHHHHHhhcccCCHHHHHHHHHcC------CchhhhhcccCCChHHHHHHHHHHHHHHH
Confidence 666666666554 45567777 88999999999999888888877766654
No 89
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=53.80 E-value=31 Score=36.59 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCch------hHHHHHHhhc-------CCCChhHHHHHHHH
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDK------RVQLAVEGRF-------CDSAISVREAALEL 900 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~------~Vq~~I~~rl-------~DsS~sVRDAAldL 900 (1801)
..|..++..|++-|....+-|+-||||+|-.+++.-+.-+... .|+...+-+= -|..-.||++|=||
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 5678899999999999999999999999999998865332221 1222222222 13345777777777
Q ss_pred HHH
Q 047845 901 LAG 903 (1801)
Q Consensus 901 IGk 903 (1801)
+.-
T Consensus 114 ~~~ 116 (122)
T cd03572 114 IKA 116 (122)
T ss_pred HHH
Confidence 764
No 90
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=53.54 E-value=47 Score=42.87 Aligned_cols=116 Identities=22% Similarity=0.346 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccC
Q 047845 1248 EDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVED 1327 (1801)
Q Consensus 1248 ~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~ 1327 (1801)
.+-+||+.|..+||++|...|.++.+. .. .|.+......+. ..+. .
T Consensus 564 ~nDDVrRAAViAlGfvc~~D~~~lv~t--ve----lLs~shN~hVR~-----------------g~Av---------a-- 609 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCDDRDLLVGT--VE----LLSESHNFHVRA-----------------GVAV---------A-- 609 (926)
T ss_pred CchHHHHHHHHheeeeEecCcchhhHH--HH----Hhhhccchhhhh-----------------hhHH---------H--
Confidence 566899999999999999999887763 22 222111111110 0000 0
Q ss_pred Cccccc-cccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCcccceeeecccCcchhhHHHH
Q 047845 1328 GHSVPV-AAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITCVPYLIALETDPQEVNSKLA 1406 (1801)
Q Consensus 1328 ~k~~~v-~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~cvPtLIALeTdp~~~Ir~~A 1406 (1801)
+++ -+|.|| .+|..|..+ +..+.++-||+.|+--++.|+-| |-|-| ||.++.+-
T Consensus 610 ---LGiacag~G~-~~a~diL~~-------L~~D~~dfVRQ~AmIa~~mIl~Q-------~n~~L-------np~v~~I~ 664 (926)
T COG5116 610 ---LGIACAGTGD-KVATDILEA-------LMYDTNDFVRQSAMIAVGMILMQ-------CNPEL-------NPNVKRII 664 (926)
T ss_pred ---hhhhhcCCcc-HHHHHHHHH-------HhhCcHHHHHHHHHHHHHHHHhh-------cCccc-------ChhHHHHH
Confidence 011 134444 345444333 23478889999999999998855 44443 56677777
Q ss_pred HHHHHHHHhhChhhhh
Q 047845 1407 HHLLMNMNEKYPAFFE 1422 (1801)
Q Consensus 1407 ~~lL~~L~eKyes~v~ 1422 (1801)
.+..+-|.+||++=+.
T Consensus 665 k~f~~vI~~Khe~gla 680 (926)
T COG5116 665 KKFNRVIVDKHESGLA 680 (926)
T ss_pred HHHHHHHhhhhHhHHH
Confidence 8888889999987543
No 91
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=53.24 E-value=57 Score=43.02 Aligned_cols=107 Identities=11% Similarity=0.129 Sum_probs=84.3
Q ss_pred cCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 873 LCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH-------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 873 L~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~-------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
|++.+|..-+.+-++|++++|--++++-|-. +... ++..+.++|...+.|.--.+|+-.+.-||+.--...+
T Consensus 415 ~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de 494 (678)
T KOG1293|consen 415 LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE 494 (678)
T ss_pred CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence 6666665555568899999999999999998 4321 7778899999999999999999999999997544333
Q ss_pred Ccc---hHHH-HHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 945 FTE---STTA-CIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 945 ~~~---~~~i-~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
-.+ ..++ +..|+.=++|+|=+|++.+.+.+..+-=
T Consensus 495 ~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 495 EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 111 1234 5678888999999999999999987653
No 92
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=52.21 E-value=97 Score=33.26 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=56.7
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHhCCCChh--hhHHHHHHHHHHhhhC--
Q 047845 876 KRVQLAVEGRFCDSAISVREAALELLAGILLH--------I-LMLYFVKVAERIKDTGVS--VRKRAIKIIRDMCTSN-- 942 (1801)
Q Consensus 876 ~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L-~~~yy~~I~eRi~D~GVs--VRKRvIKilkdIy~~~-- 942 (1801)
..+.++|.+|+...+|-|==-||.|+.-+..+ + ..+|.+.+...+.++... ||+|++.++..-+...
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 45677888999988888888899998873322 2 345777777777776553 9999999998887766
Q ss_pred -CCCcchHHHHHHh
Q 047845 943 -TNFTESTTACIEI 955 (1801)
Q Consensus 943 -p~~~~~~~i~~~i 955 (1801)
|+++.+.++...|
T Consensus 116 ~~~~~~i~~~y~~L 129 (133)
T smart00288 116 DPDLSQIVDVYDLL 129 (133)
T ss_pred CCCchHHHHHHHHH
Confidence 4555445444433
No 93
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=50.90 E-value=1e+02 Score=33.03 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=53.0
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------HHH-HHHHHHHHHhCC---CChhhhHHHHHHHHHHhhhCC
Q 047845 876 KRVQLAVEGRFCDSAISVREAALELLAGILLH--------ILM-LYFVKVAERIKD---TGVSVRKRAIKIIRDMCTSNT 943 (1801)
Q Consensus 876 ~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L~~-~yy~~I~eRi~D---~GVsVRKRvIKilkdIy~~~p 943 (1801)
..+.++|.+|+...+|.|.=-||.|+.-+..+ +.. +|...+..-+.. +...||++++.++..-....+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 55778899999999999999999999874332 444 666676666655 356799999999988877765
Q ss_pred C
Q 047845 944 N 944 (1801)
Q Consensus 944 ~ 944 (1801)
+
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 5
No 94
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.22 E-value=1.3e+02 Score=40.28 Aligned_cols=136 Identities=18% Similarity=0.286 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhh-------------------
Q 047845 1159 FLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRY------------------- 1219 (1801)
Q Consensus 1159 ~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry------------------- 1219 (1801)
...|+.|+|..+|-+.++-.++|=.. .-.||+.|... +|.=.+.|.|-+.|-|.-+
T Consensus 194 Dp~V~SAAV~VICELArKnPknyL~L---AP~ffkllttS--sNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT 268 (877)
T KOG1059|consen 194 DPSVVSAAVSVICELARKNPQNYLQL---APLFYKLLVTS--SNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST 268 (877)
T ss_pred CchHHHHHHHHHHHHHhhCCcccccc---cHHHHHHHhcc--CCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh
Confidence 34799999999999988777665332 22355554432 2211222333332222211
Q ss_pred ---------ccccccccc--c--Cc-cchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhc
Q 047845 1220 ---------GSSLLTTSY--E--KN-IDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLA 1285 (1801)
Q Consensus 1220 ---------~~~~~~~~~--~--k~-~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~ 1285 (1801)
-+-.++++. | -| ..+.-|+.-+.-|+...|..++-.+|-+|+.|.-.||...... ..++-+.|.
T Consensus 269 ~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~--kdlIlrcL~ 346 (877)
T KOG1059|consen 269 VAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH--KDLILRCLD 346 (877)
T ss_pred HHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh--HHHHHHHhc
Confidence 111222211 1 11 1122345555556667889999999999999999999987763 666777776
Q ss_pred CCchhHHHHHHHHHHHH
Q 047845 1286 DSSHIRLKMQALQNLYE 1302 (1801)
Q Consensus 1286 ~~~~~~lK~~vL~nl~e 1302 (1801)
+ .+..+++++|.-++.
T Consensus 347 D-kD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 347 D-KDESIRLRALDLLYG 362 (877)
T ss_pred c-CCchhHHHHHHHHHH
Confidence 5 367788888876664
No 95
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=49.27 E-value=1.7e+02 Score=31.59 Aligned_cols=86 Identities=14% Similarity=0.264 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCChh-
Q 047845 857 KALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH---------ILMLYFVKVAERIKDTGVS- 926 (1801)
Q Consensus 857 KALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---------L~~~yy~~I~eRi~D~GVs- 926 (1801)
-++-.|.-+|..++. ....+.++|.+|+...+|.|-=-||.|+.-+..+ -..+|.+.+..-+.+....
T Consensus 24 ~~~l~icD~i~~~~~--~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~ 101 (140)
T PF00790_consen 24 SLILEICDLINSSPD--GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDP 101 (140)
T ss_dssp HHHHHHHHHHHTSTT--HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHcCCc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCc
Confidence 344445666666521 1356788899999999999999999998873322 1234666666655544443
Q ss_pred ---hhHHHHHHHHHHhhhCCC
Q 047845 927 ---VRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 927 ---VRKRvIKilkdIy~~~p~ 944 (1801)
||++++.++..-......
T Consensus 102 ~~~Vk~k~l~ll~~W~~~f~~ 122 (140)
T PF00790_consen 102 ETPVKEKILELLQEWAEAFKS 122 (140)
T ss_dssp HSHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHCC
Confidence 999999999888777633
No 96
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=47.92 E-value=1.8e+02 Score=38.42 Aligned_cols=146 Identities=15% Similarity=0.072 Sum_probs=100.3
Q ss_pred hcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccc
Q 047845 1246 RMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTV 1325 (1801)
Q Consensus 1246 ~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~ 1325 (1801)
...+..||.-++.+|+--|+..|++|.+-....-+.-.|+ +.+..++.++++.+.- |-..+-.
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LS-Dn~~~vRl~v~Kil~~-L~s~~p~--------------- 347 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLS-DNHEGVRLLVSKILLF-LCSRIPH--------------- 347 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccc-cchHHHHHHHHHHHHH-HHhcCCc---------------
Confidence 3467789999999999999999999988654443444443 4567777777765544 3321100
Q ss_pred cCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCCCcc--cceeeecccCcc----
Q 047845 1326 EDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHPITC--VPYLIALETDPQ---- 1399 (1801)
Q Consensus 1326 ~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP~~c--vPtLIALeTdp~---- 1399 (1801)
. +..--.+.||-..||+.|.-.-+-||-.+++++.-.---|+.+-++. |..+ -+..-|.
T Consensus 348 --------~------d~ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~~SeIlIvssc-mlDi~pd~r~~ 412 (740)
T COG5537 348 --------T------DAIRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLSSSEILIVSSC-MLDIIPDSREN 412 (740)
T ss_pred --------c------hHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccchhHHHHHHHH-HhcCCCcchHH
Confidence 0 11224788999999999987666699999999999999999998663 3444 2333333
Q ss_pred --hhhHHHHHHHHHHHHhhChhhhhh
Q 047845 1400 --EVNSKLAHHLLMNMNEKYPAFFES 1423 (1801)
Q Consensus 1400 --~~Ir~~A~~lL~~L~eKyes~v~~ 1423 (1801)
..+..++.-.-.-+.||.|-++.+
T Consensus 413 ~~E~v~~icK~~aevikEKipl~~k~ 438 (740)
T COG5537 413 IVESVESICKIDAEVIKEKIPLATKT 438 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 334555555555677888888754
No 97
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.84 E-value=1.8e+02 Score=31.59 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=55.2
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHhCC------CChhhhHHHHHHHHHHhh
Q 047845 876 KRVQLAVEGRFCDSAISVREAALELLAGILLH--------IL-MLYFVKVAERIKD------TGVSVRKRAIKIIRDMCT 940 (1801)
Q Consensus 876 ~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L~-~~yy~~I~eRi~D------~GVsVRKRvIKilkdIy~ 940 (1801)
....++|.+|+...+|-|==-||.|+--+..+ ++ ..|...+...+.+ +-..||+|++.++..--.
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 34566777888877777766688777663221 33 4577777777754 557899999999998877
Q ss_pred hCCCCcchHHHHHHh
Q 047845 941 SNTNFTESTTACIEI 955 (1801)
Q Consensus 941 ~~p~~~~~~~i~~~i 955 (1801)
..++.+...++...|
T Consensus 117 ~f~~~p~~~~~Y~~L 131 (139)
T cd03567 117 ELPHEPKIKEAYDML 131 (139)
T ss_pred HhcccchHHHHHHHH
Confidence 777666655555433
No 98
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=47.82 E-value=2.5e+02 Score=38.95 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHHHhcCCC-hhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHH-HHH
Q 047845 833 SRGFDKILHLLLVSLRENS-PIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAGIL-LHI 908 (1801)
Q Consensus 833 ~~sFd~iL~~LL~~L~~~s-~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~-~~L 908 (1801)
.+.|..++..++.....|+ +.|=..|.-||..|..+-+.... ...|-..|..|+.|--+.|||+++.-+-.+. ..-
T Consensus 289 ~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~ 368 (815)
T KOG1820|consen 289 VKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP 368 (815)
T ss_pred ccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc
Confidence 4555666666666666554 66668889999988877665432 2345677888999999999999988887743 335
Q ss_pred HHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCC----CCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 909 LMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNT----NFTESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 909 ~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p----~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
...+.+.|.+-+.+...++|=++..++-......+ ....+..++-.++..++|-+.-||+-|.+++-.+-
T Consensus 369 l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 369 LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 58899999999999999999998777666555544 11334455678899999999899999988876553
No 99
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=46.02 E-value=64 Score=38.55 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=65.9
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccC-chhHHHHHHhhcCCC-ChhHHHHHHHHHHH--HHH---HHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLC-DKRVQLAVEGRFCDS-AISVREAALELLAG--ILL---HILMLY 912 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~-~~~Vq~~I~~rl~Ds-S~sVRDAAldLIGk--I~~---~L~~~y 912 (1801)
+..|.+.|..+.+++|.+|+.+|..+..-+++--. ...+-...+..+.++ ...|.-|++.++.. +.. ++...|
T Consensus 56 i~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~ 135 (254)
T PF04826_consen 56 ISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANY 135 (254)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhh
Confidence 56888999999999999999999987655543332 122333333223322 34666899999999 333 255567
Q ss_pred HHHHHHHhCCCChhhhHHHHHHHHHH
Q 047845 913 FVKVAERIKDTGVSVRKRAIKIIRDM 938 (1801)
Q Consensus 913 y~~I~eRi~D~GVsVRKRvIKilkdI 938 (1801)
.+.+..-+.--..-+|=.|+|.|--+
T Consensus 136 i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 136 IPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 77776555555556777888887765
No 100
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.64 E-value=2.2e+02 Score=39.07 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=58.6
Q ss_pred HHHHHHhhhccchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCc---hhHHHHHHhhcCCCChhHHH
Q 047845 819 VKKITLALGQNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCD---KRVQLAVEGRFCDSAISVRE 895 (1801)
Q Consensus 819 ~~~i~~~l~~~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~---~~Vq~~I~~rl~DsS~sVRD 895 (1801)
+.++++++| --+.+.|+.+++..|+...++--..|.-|+-.++++...-.--..+ .-++..+.---.|.|+.||.
T Consensus 830 i~k~~qa~G--el~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRR 907 (982)
T KOG4653|consen 830 ILKVAQALG--ELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRR 907 (982)
T ss_pred HHHHHHHhc--cHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHH
Confidence 334444432 2345677999999999999998888999999999987543322222 22344444445599999999
Q ss_pred HHHHHHHH
Q 047845 896 AALELLAG 903 (1801)
Q Consensus 896 AAldLIGk 903 (1801)
|||.||.-
T Consensus 908 aAv~li~~ 915 (982)
T KOG4653|consen 908 AAVHLLAE 915 (982)
T ss_pred HHHHHHHH
Confidence 99999986
No 101
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=44.38 E-value=86 Score=39.56 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=82.7
Q ss_pred HHHHHHhcCccccCch---hHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH-----HHHHHHHHHHHHhCCCChh---hh
Q 047845 861 AVSIIVEVDPEVLCDK---RVQLAVEGRFCDSAISVREAALELLAG-ILLH-----ILMLYFVKVAERIKDTGVS---VR 928 (1801)
Q Consensus 861 ~Ls~ive~DPsIL~~~---~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~-----L~~~yy~~I~eRi~D~GVs---VR 928 (1801)
.|-.++...|.+-.+- .....|...+.+++..||-|++-++=- |... +.....+.++-|..|..-+ =|
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 4555666777554432 233445446777779999999998876 5433 3333455566666666543 48
Q ss_pred HHHHHHHHHHhhhCCCCcchHHH-HHHhhcccCCCchhHHHHHHHHHHhhccCC
Q 047845 929 KRAIKIIRDMCTSNTNFTESTTA-CIEIISRVNDDESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 929 KRvIKilkdIy~~~p~~~~~~~i-~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p 981 (1801)
=.|+|+.|.+..-..+-...+.. ...|+.=.+++||..+..+.+|+-|+-+.-
T Consensus 86 ~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~ 139 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLN 139 (371)
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC
Confidence 89999999998774333344444 455777788899999999999999999864
No 102
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=44.33 E-value=22 Score=46.99 Aligned_cols=133 Identities=16% Similarity=0.252 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc-CccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEV-DPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-------- 907 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~-DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------- 907 (1801)
|.|+-++...+.+..+++|-..+||+..++.+ .+..|...-+ +...+--.|+..-.|--....+|||..+
T Consensus 368 d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ell-r~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~ 446 (690)
T KOG1243|consen 368 DQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELL-RYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKR 446 (690)
T ss_pred chhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHH-HHHHhhCccccCcccccceeeecccccccchhhhcc
Confidence 78888998899999999999999998888754 2334443333 2332222388889999999999996544
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhccc----CCCchhHHHHHHHHHHhhc
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRV----NDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv----~DEEdsIkdLa~~tf~elW 978 (1801)
|+..|-. ...|+=+.-||-.+.-+.- ++++-...+++.+|+.++ -|+|.+|++-|.+.+....
T Consensus 447 vL~~aftr----alkdpf~paR~a~v~~l~a----t~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 447 VLASAFTR----ALKDPFVPARKAGVLALAA----TQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccchhhhh----hhcCCCCCchhhhhHHHhh----cccccchhhhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 3444433 3678888888888776554 344455677888888887 5889999999999887754
No 103
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.10 E-value=1.1e+02 Score=38.59 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCch--hHHHHHHhhcCCCChhHHHHHHHHHHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDK--RVQLAVEGRFCDSAISVREAALELLAG 903 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~--~Vq~~I~~rl~DsS~sVRDAAldLIGk 903 (1801)
.|+.||.-|.--.+++|.-|+..|-.++-..|+.|... ..-..+..+.+|.+.+||++.+.|+-.
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~ 125 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDS 125 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHH
Confidence 47889999999999999999999999999999988832 233444558889999999999999887
No 104
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=43.88 E-value=1.1e+03 Score=32.85 Aligned_cols=407 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH------HHHHHHHHHHHHhCC
Q 047845 849 ENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH------ILMLYFVKVAERIKD 922 (1801)
Q Consensus 849 ~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~------L~~~yy~~I~eRi~D 922 (1801)
++.+-||.-+=+-++.+..+=++-.....|.....+-..|.+-+||++|++-.+.+... ....+.+.+..-..|
T Consensus 248 d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d 327 (759)
T KOG0211|consen 248 DDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVED 327 (759)
T ss_pred ccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcC
Q ss_pred CChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCCCCCcccccCCCCCchHHHHH
Q 047845 923 TGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAK 1002 (1801)
Q Consensus 923 ~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d~ss~~~~~~~ 1002 (1801)
..-.||=++.+..-++|..-..-...+..--....-+.|++..++-.+-.-.++ |.+..+......--.+...+.+..
T Consensus 328 ~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~--l~~~l~~~~~~~i~~~~ilp~~~~ 405 (759)
T KOG0211|consen 328 GSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQK--LACYLNASCYPNIPDSSILPEVQV 405 (759)
T ss_pred hhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHH--HhhhcCcccccccchhhhhHHHHH
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchh
Q 047845 1003 KTEQIVEMSRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQVEEMNNEGMEMRTLP 1082 (1801)
Q Consensus 1003 k~~~iv~vl~~~~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~lee~~~~~~~~~~~~ 1082 (1801)
.+..-...++ -.....-......++........-+.....+...|..+-..+++.+..+++..+...-.....
T Consensus 406 lv~d~~~~vr-------~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 406 LVLDNALHVR-------SALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred HHhcccchHH-------HHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Q ss_pred HHHHHHhhhccccCccCCCCCccchhhhhccccccccChHHHHHhhcceeeeccCCChhHHHHHHHHHHHHHhccChHHH
Q 047845 1083 YVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDNRVVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTV 1162 (1801)
Q Consensus 1083 ~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~~~~~~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~~~~~v 1162 (1801)
.++-. +..|.|.+ ..+....+++.+--+-..+=..|..+--..|...=.-.....+
T Consensus 479 slLp~--------------------i~el~~d~----~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~I 534 (759)
T KOG0211|consen 479 SLLPA--------------------IVELAEDL----LWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSI 534 (759)
T ss_pred hhhhh--------------------hhhhccch----hHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHH
Q ss_pred HHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhccccccccccCccchhhhHHHHH
Q 047845 1163 VHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFK 1242 (1801)
Q Consensus 1163 v~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~ 1242 (1801)
-.+|..||+.++...+..+-.-+...+.+...++. +--.-...++.+..|+--+ +..+.....+++|.
T Consensus 535 r~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~----~y~~R~t~l~si~~la~v~--------g~ei~~~~Llp~~~ 602 (759)
T KOG0211|consen 535 REAAARNLPALVETFGSEWARLEEIPKLLAMDLQD----NYLVRMTTLFSIHELAEVL--------GQEITCEDLLPVFL 602 (759)
T ss_pred HHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc----ccchhhHHHHHHHHHHHHh--------ccHHHHHHHhHHHH
Q ss_pred HHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHH
Q 047845 1243 RYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLY 1301 (1801)
Q Consensus 1243 ~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~ 1301 (1801)
.........||..+++.|-.+---=-.=.....++++.....+ +++.+.|......+.
T Consensus 603 ~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~-d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 603 DLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS-DQELDVRYRAILAFG 660 (759)
T ss_pred HhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc-CcccchhHHHHHHHH
No 105
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=43.30 E-value=13 Score=44.85 Aligned_cols=46 Identities=28% Similarity=0.748 Sum_probs=33.1
Q ss_pred ccccccccccchhhhhc-cccc-cccccccccccccCCCCCCcchhhhhh
Q 047845 662 LCCVCLDGRVEKRVFMC-QGCQ-RLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 662 l~~~~l~~~~~~lv~~~-~g~~-r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
..|.|--..-..|+.|+ .+|- .|||..|+|.+.- |--.|+|..|..
T Consensus 220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~--PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTK--PKGKWYCPRCKA 267 (274)
T ss_pred EEEEecccccccccccCCCCCCcceEEEeccccccC--CCCcccchhhhh
Confidence 44555533446789888 3686 9999999998732 334699999875
No 106
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.02 E-value=2.3e+02 Score=38.58 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCc
Q 047845 1251 SVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADS-SHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGH 1329 (1801)
Q Consensus 1251 ~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~-~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k 1329 (1801)
+=|+.|+.+|-.+...|-...--.-...+ -++|+.+ .+.++-..+|..+...+..+|.-...+.. +
T Consensus 38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~l-i~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds------------~ 104 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKYREEVGAQGMKPL-IQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDS------------T 104 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcccHHH-HHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccc------------h
Confidence 33788888877776655433222222222 2344433 44554446787777766544411111000 0
Q ss_pred cccccccCCCcchHHHHHHHHH------HHHHHHHcCCChhHHHHHHHHHHHHHhcC--------ccCCCcccceeeecc
Q 047845 1330 SVPVAAGAGDTNICGGIIQLYW------DKILGRCLDANEEVRQTALKIVEVVLRQG--------LVHPITCVPYLIALE 1395 (1801)
Q Consensus 1330 ~~~v~~g~~Dsgv~s~ivQrYL------~~IL~~~ls~~~~vr~~Al~vl~~ilrQG--------LVhP~~cvPtLIALe 1395 (1801)
. .| .+...++..|+ .-++..-=..+-.||+.|++++..++++- +|+|.. |..||-|.
T Consensus 105 q-------sd-d~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~g-IS~lmdlL 175 (970)
T KOG0946|consen 105 Q-------SD-DLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMG-ISKLMDLL 175 (970)
T ss_pred h-------hh-HHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchh-HHHHHHHH
Confidence 0 01 12333444333 33444444677899999999999998764 678864 56999999
Q ss_pred cCcchhhHHHHHHHHHHHHhhChh
Q 047845 1396 TDPQEVNSKLAHHLLMNMNEKYPA 1419 (1801)
Q Consensus 1396 Tdp~~~Ir~~A~~lL~~L~eKyes 1419 (1801)
+|...-||+-|.-+|.++-+-.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCch
Confidence 999999999999999999776554
No 107
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.30 E-value=1.6e+02 Score=39.53 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHh----cCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH-HH---
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVE----VDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL-LH--- 907 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive----~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~-~~--- 907 (1801)
.+.++.+||+...++.-+||-+.+-.|+-++. .|..|+. .+...+..|+.|--|.||=-||=-+.+.. ..
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 37889999999999999999999999988876 3333332 24667778999999999999999999844 21
Q ss_pred --HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHH
Q 047845 908 --ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFY 975 (1801)
Q Consensus 908 --L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~ 975 (1801)
-+..-|..+++ .|++--||.-|+-. +..++ +..+ .|+.|.-|-...+|+||.+.+.
T Consensus 161 e~~v~n~l~~liq--nDpS~EVRRaaLsn-----I~vdn-sTlp----~IveRarDV~~anRrlvY~r~l 218 (892)
T KOG2025|consen 161 ECPVVNLLKDLIQ--NDPSDEVRRAALSN-----ISVDN-STLP----CIVERARDVSGANRRLVYERCL 218 (892)
T ss_pred cccHHHHHHHHHh--cCCcHHHHHHHHHh-----hccCc-ccch----hHHHHhhhhhHHHHHHHHHHhh
Confidence 23344444444 59999999888642 23222 3333 3567888888788888877654
No 108
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.75 E-value=2.2e+02 Score=37.90 Aligned_cols=169 Identities=14% Similarity=0.168 Sum_probs=87.0
Q ss_pred hhcccccccc-ChHHHHHhhcceeeeccCCChhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccCCchh-----H
Q 047845 1110 TLQPYLKSQV-DNRVVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLS-----T 1183 (1801)
Q Consensus 1110 ~L~PYL~~~~-~~~~~~~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~-----~ 1183 (1801)
.+.-+|+... +..+.++++-.....+++|.+..++++.+-+..--.+.. ..+-..|+=++++++++...+.. .
T Consensus 361 ~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~-~~l~~sa~l~~~~lv~~~c~~~~~~~~~~ 439 (574)
T smart00638 361 FIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQ-PYLRESALLAYGSLVRRYCVNTPSCPDFV 439 (574)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCcccccc-HHHHHHHHHHHHHHHHHHhcCCCCCChhh
Confidence 3344444432 223344555444555677888888877654432112211 23445666677777764433321 2
Q ss_pred HHHHHHHHHHhhhcCCC-CChhhhhhHHHHHHHHHhhccccccccccCccchhhhHHHHHHHhhc---CChHHHHHHHHH
Q 047845 1184 VEHLILVFFKYLDSHNP-DSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRM---EDFSVKVRSLQA 1259 (1801)
Q Consensus 1184 v~~~i~~~~~~L~~~~~-d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~---~d~~iR~~AL~a 1259 (1801)
+...+..+...|..... .+.....-.|-.+| |......+..|..|+.. .+..+|..|+.|
T Consensus 440 ~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG----------------N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~A 503 (574)
T smart00638 440 LEELLKYLHELLQQAVSKGDEEEIQLYLKALG----------------NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILA 503 (574)
T ss_pred HHHHHHHHHHHHHHHHhcCCchheeeHHHhhh----------------ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 23344444433332211 11111111222222 12234555666666652 346799999999
Q ss_pred HHHHHhcCcchhchhhHHHHHHHHhcC-CchhHHHHHHHHHH
Q 047845 1260 LGFVLIARPEHMLEKDIGKILEATLAD-SSHIRLKMQALQNL 1300 (1801)
Q Consensus 1260 LG~lc~s~P~l~~~~~v~~i~~~~l~~-~~~~~lK~~vL~nl 1300 (1801)
|-.+-..+|+ .+..++-.+|.+ ..+.++++.++-.|
T Consensus 504 lr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 504 LRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 9988878885 456666666655 34566666654333
No 109
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.19 E-value=2e+02 Score=31.41 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=52.2
Q ss_pred hhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCC-CChhhhHHHHHHHHHHhhhCCCC
Q 047845 876 KRVQLAVEGRFCDSAISVREAALELLAGILLH---------ILMLYFVKVAERIKD-TGVSVRKRAIKIIRDMCTSNTNF 945 (1801)
Q Consensus 876 ~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---------L~~~yy~~I~eRi~D-~GVsVRKRvIKilkdIy~~~p~~ 945 (1801)
.+..++|.+|+....|.|==-||.|+.-+..+ -..+|.+.+...+.+ +...||.|++.+++.-....++-
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 35677788888887787777788888773322 334677777777777 78899999999999887666543
Q ss_pred c
Q 047845 946 T 946 (1801)
Q Consensus 946 ~ 946 (1801)
+
T Consensus 116 ~ 116 (144)
T cd03568 116 P 116 (144)
T ss_pred c
Confidence 3
No 110
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=39.14 E-value=3.9e+02 Score=29.16 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=55.6
Q ss_pred chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHhC-CCChhhhHHHHHHHHHHhhhCCC
Q 047845 875 DKRVQLAVEGRFCDSAISVREAALELLAGILLH--------I-LMLYFVKVAERIK-DTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 875 ~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L-~~~yy~~I~eRi~-D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
..+..++|.+|+....|.|==-||.|+.-+..+ + ..+|.+.+...+. .+...||+|++.++..-+...++
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 356778899999998888888889888773222 2 3346666655554 56677999999999887766554
Q ss_pred Ccc---hHHHHHHhh
Q 047845 945 FTE---STTACIEII 956 (1801)
Q Consensus 945 ~~~---~~~i~~~iL 956 (1801)
.+. +.++...|.
T Consensus 119 ~~~l~~i~~~y~~L~ 133 (142)
T cd03569 119 KPQLKYVVDTYQILK 133 (142)
T ss_pred CcccHHHHHHHHHHH
Confidence 333 444444443
No 111
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=38.37 E-value=3.8e+02 Score=31.54 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=79.8
Q ss_pred HhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHh----
Q 047845 846 SLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLHILMLYFVKVAERI---- 920 (1801)
Q Consensus 846 ~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~L~~~yy~~I~eRi---- 920 (1801)
.-....+++.++.|++|..+...+- ...+.|-+++.......+..++==++.|+.+ ...+ +.-|+.|-..+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN--DRHFPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHH
Confidence 4456789999999999999998873 3345566666656666666666667788887 3333 22222222112
Q ss_pred -------CCCChhhhHHH--HHHHHHHhhhCCCCcchHHH---HHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 921 -------KDTGVSVRKRA--IKIIRDMCTSNTNFTESTTA---CIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 921 -------~D~GVsVRKRv--IKilkdIy~~~p~~~~~~~i---~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
.+.....+-.+ --.+++||...|+ .-.++ ...+|. ++.++.++.++.+.+..++
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~--~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLN--QSCDEVAQALALEALAPLC 150 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHH
Confidence 22222222211 1268999999999 33333 344554 7777899999999999999
No 112
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=37.64 E-value=1.1e+02 Score=42.04 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=79.3
Q ss_pred hhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCch--hHHHHHH--hhcCCC-ChhHHHHHHHHHHHHHH
Q 047845 832 FSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDK--RVQLAVE--GRFCDS-AISVREAALELLAGILL 906 (1801)
Q Consensus 832 f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~--~Vq~~I~--~rl~Ds-S~sVRDAAldLIGkI~~ 906 (1801)
+..-|..+|-.||..|+=+.+-+|.-++.++...+..-++++... .+-.... .+=.|+ +..||++|+..++-+..
T Consensus 903 llp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~ 982 (1030)
T KOG1967|consen 903 LLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR 982 (1030)
T ss_pred hccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence 445678888999999999999999999999999999988888732 2222222 233343 37899999999998432
Q ss_pred ---H-----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHh
Q 047845 907 ---H-----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMC 939 (1801)
Q Consensus 907 ---~-----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy 939 (1801)
. +-++-...|+-.+.|+-=-|||-|++.=..-|
T Consensus 983 ~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 983 RLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred cCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence 2 56778888888888888888888887644333
No 113
>PF05322 NinE: NINE Protein; InterPro: IPR007986 This family consists of NINE proteins from several bacteriophage and from Escherichia coli.
Probab=37.04 E-value=34 Score=31.19 Aligned_cols=45 Identities=27% Similarity=0.242 Sum_probs=35.6
Q ss_pred hhHhHHHHHHHHhcccCCcCcccccccc-cCCcCCCchHHHHHHHHH
Q 047845 459 QHRTYVIDEILLLLWKLPSTKRALRTYH-LPDEEQRQIQMVTALLIQ 504 (1801)
Q Consensus 459 ~qR~~IidEILsSL~KLP~~Krs~R~fk-L~dg~~~~IQ~vTALlmq 504 (1801)
.||..|-|=|+.++.=||+ ||+.+.++ ++.+++.+-+..+|=|.|
T Consensus 3 rqrRSiTdi~ceNc~ylpT-kRs~~k~kpip~~S~vktf~y~~~L~d 48 (60)
T PF05322_consen 3 RQRRSITDIICENCKYLPT-KRSRNKKKPIPTESDVKTFNYTAHLWD 48 (60)
T ss_pred hhhhhHHHHHHhhceeccc-cccccCCCCCCChhhcccccchhHHHH
Confidence 4889999999999999999 89999898 677655666666665443
No 114
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=36.84 E-value=95 Score=41.59 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=73.8
Q ss_pred HHHhhcceeeeccCCChhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccCCch-----------hHHHHHHHHHH
Q 047845 1124 VAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGL-----------STVEHLILVFF 1192 (1801)
Q Consensus 1124 ~~~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~-----------~~v~~~i~~~~ 1192 (1801)
.++++-......++|.+..++++.+-+..-..+.. ..+-.+|+-+++++++...... ..+...+..+.
T Consensus 414 a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~-~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (618)
T PF01347_consen 414 AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNS-PYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLE 492 (618)
T ss_dssp HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT--HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHH
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHH
Confidence 34444333334457888888887765543333322 2355677777888877554442 11222222333
Q ss_pred HhhhcC-CCCChhhhhhHHHHHHHHHhhccccccccccCccchhhhHHHHHHHhhcC---ChHHHHHHHHHHHHHHhcCc
Q 047845 1193 KYLDSH-NPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRME---DFSVKVRSLQALGFVLIARP 1268 (1801)
Q Consensus 1193 ~~L~~~-~~d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~~---d~~iR~~AL~aLG~lc~s~P 1268 (1801)
..|... ...+.....-.|-.+|-++ ....+..+..|+... +..+|..|+.||..+-..+|
T Consensus 493 ~~l~~~~~~~~~~~~~~~LkaLgN~g----------------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 493 QELKEAVSRGDEEEKIVYLKALGNLG----------------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT-----------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H
T ss_pred HHHHHHhhccCHHHHHHHHHHhhccC----------------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc
Confidence 333311 0111112212222233222 234556666665443 67899999999987755555
Q ss_pred chhchhhHHHHHHHHhcC-CchhHHHHHHHHHH
Q 047845 1269 EHMLEKDIGKILEATLAD-SSHIRLKMQALQNL 1300 (1801)
Q Consensus 1269 ~l~~~~~v~~i~~~~l~~-~~~~~lK~~vL~nl 1300 (1801)
..++.++-.+|.+ +.+.++++.++.-|
T Consensus 557 -----~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 557 -----EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -----HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 3466677777764 34667776665444
No 115
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=35.90 E-value=44 Score=35.41 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=46.6
Q ss_pred hhhhHHHHHHHHHHHhcCCC----hhHHhHHHHHHHHHHh-cCccccCchhHHHHHHhhcCCCChhHHHHHHHHH
Q 047845 832 FSRGFDKILHLLLVSLRENS----PIIRAKALRAVSIIVE-VDPEVLCDKRVQLAVEGRFCDSAISVREAALELL 901 (1801)
Q Consensus 832 f~~sFd~iL~~LL~~L~~~s----~~vRSKALK~Ls~ive-~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLI 901 (1801)
+.+.++.++..+...|.... ..+..++|||+...+. .|++.+....+-..+-+-+ +++..|++|+|.+
T Consensus 76 l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 76 LRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 44556777777766665433 8899999999999765 5556665554555665555 5566699999864
No 116
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=35.51 E-value=1.4e+03 Score=31.57 Aligned_cols=87 Identities=13% Similarity=0.070 Sum_probs=54.9
Q ss_pred chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC-
Q 047845 875 DKRVQLAVEGRFCDSAISVREAALELLAGILLH---------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN- 944 (1801)
Q Consensus 875 ~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~- 944 (1801)
++.|-+.|. -+.|.++.-|.-+.+++.||..+ ++++||+-|+..+......+- =.+.-+--++...-.
T Consensus 715 ~~~v~R~v~-~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 715 DPIVSRVVL-DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGR 792 (1172)
T ss_pred hHHHHHHhh-hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhc
Confidence 455555554 68899999999999999994432 999999999999876554443 112222222222111
Q ss_pred -CcchHHHHHHhhcccCCCc
Q 047845 945 -FTESTTACIEIISRVNDDE 963 (1801)
Q Consensus 945 -~~~~~~i~~~iL~Rv~DEE 963 (1801)
.+-.+.||.-+|-|++..-
T Consensus 793 ~kpylpqi~stiL~rLnnks 812 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKS 812 (1172)
T ss_pred cccchHHHHHHHHHHhcCCC
Confidence 1335667777777766543
No 117
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.14 E-value=1.7e+02 Score=36.43 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=69.3
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH-------
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH------- 907 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~------- 907 (1801)
+..+++-+..+.+.||.+|+.-|+.++.-.|. |+.....+..+..--.|.+--||-.|+--|+. |.-+
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~f 205 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEF 205 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34555677888999999999999999988773 22222223333222247777899999988888 5432
Q ss_pred HHHHHHHHHHHHhCC--CChhhhHHHHHHHHHHhhhC
Q 047845 908 ILMLYFVKVAERIKD--TGVSVRKRAIKIIRDMCTSN 942 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D--~GVsVRKRvIKilkdIy~~~ 942 (1801)
+...-|.+|.+.+.. +.+-.+.+|+-++-++..+.
T Consensus 206 l~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 206 LKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 455668899999888 44445556666666665444
No 118
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=33.43 E-value=3.2e+02 Score=32.82 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=52.5
Q ss_pred HHHHHHh-hcCChHHHHHHHHHHHHHHhcCcchhch-hh--HHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHhhhcc
Q 047845 1239 NLFKRYL-RMEDFSVKVRSLQALGFVLIARPEHMLE-KD--IGKILEATLADS-SHIRLKMQALQNLYEYLLDAENQME 1312 (1801)
Q Consensus 1239 ~lf~~~~-~~~d~~iR~~AL~aLG~lc~s~P~l~~~-~~--v~~i~~~~l~~~-~~~~lK~~vL~nl~eFL~~eE~r~~ 1312 (1801)
.++-..+ ...+..++..+|.+|-.++..+|..+.. ++ =..++...|++. .+-++|..+++.|+=||..|+--..
T Consensus 136 ~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~ 214 (257)
T PF08045_consen 136 ELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIP 214 (257)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCC
Confidence 3444443 2367889999999999999999985543 22 234566778764 3567888899999999987765443
No 119
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=33.38 E-value=65 Score=36.60 Aligned_cols=53 Identities=25% Similarity=0.277 Sum_probs=38.6
Q ss_pred hHHhHHHHHHHHHHhc-CccccCc------hhH--------HHHHHhhcCCCChhHHHHHHHHHHHHH
Q 047845 853 IIRAKALRAVSIIVEV-DPEVLCD------KRV--------QLAVEGRFCDSAISVREAALELLAGIL 905 (1801)
Q Consensus 853 ~vRSKALK~Ls~ive~-DPsIL~~------~~V--------q~~I~~rl~DsS~sVRDAAldLIGkI~ 905 (1801)
+||--|+.||..++.. ||..|-. |+. ...+.--+.|+++.||-||+.++.-++
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL 68 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALL 68 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHH
Confidence 6899999999999999 8665532 111 122222456999999999999999743
No 120
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.14 E-value=98 Score=41.00 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcC----ccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHhCCCChh
Q 047845 858 ALRAVSIIVEVD----PEVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL----LH---ILMLYFVKVAERIKDTGVS 926 (1801)
Q Consensus 858 ALK~Ls~ive~D----PsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~----~~---L~~~yy~~I~eRi~D~GVs 926 (1801)
||--++.+++.= ..+++...+...+..|+.|.-|-||.++.-|+|-+. .+ ....|++.|..++.-.++|
T Consensus 639 sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~is 718 (885)
T KOG2023|consen 639 SLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENIS 718 (885)
T ss_pred eHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhch
Confidence 455555555532 246666778888999999999999999999999932 22 6788999999999999999
Q ss_pred hhHHHHHHHHHHhhhC
Q 047845 927 VRKRAIKIIRDMCTSN 942 (1801)
Q Consensus 927 VRKRvIKilkdIy~~~ 942 (1801)
|=--||.-+.+|+.+-
T Consensus 719 v~nNA~WAiGeia~k~ 734 (885)
T KOG2023|consen 719 VCNNAIWAIGEIALKM 734 (885)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 121
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=33.10 E-value=86 Score=35.24 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=46.5
Q ss_pred CCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 921 KDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 921 ~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
.|.|+-+||-|--++--+.....+.-....+..+++.-+.| |..|+-|+..++..+
T Consensus 37 vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl 92 (169)
T PF08623_consen 37 VDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKL 92 (169)
T ss_dssp EEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHH
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHH
Confidence 59999999999999988887766644556667888999999 669999999999988
No 122
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.94 E-value=2.5e+02 Score=39.86 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchh---HHHHHHhhcCCCChhHHHHHHHHHHH-HHH--H-
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKR---VQLAVEGRFCDSAISVREAALELLAG-ILL--H- 907 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~---Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~--~- 907 (1801)
....||..|-..+..++.-+++..|=+++.++-.-.++++++. +-..|...+.-.++-||.|||++|-. |.. .
T Consensus 782 ~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 782 ILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 4456777776667777888888779999999998899999765 45677788999999999999999998 542 1
Q ss_pred ----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhC
Q 047845 908 ----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSN 942 (1801)
Q Consensus 908 ----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~ 942 (1801)
..++..+.|..-..|...-|||.|--+++-++.+.
T Consensus 862 ~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 862 CLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 55667788888888999999999998988887654
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=30.59 E-value=1.2e+02 Score=39.41 Aligned_cols=98 Identities=20% Similarity=0.133 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKV- 916 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I- 916 (1801)
.|..+|.+-+--...-||+-|+-||+...=.-.++.....|..++.+|+.|.--.|||-|-=++--+-.+ +.+.+.+
T Consensus 487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~--da~~pl~~ 564 (898)
T COG5240 487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLS--DACEPLFS 564 (898)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhh--hhhhcccc
Confidence 3444444443333445788888888776444344455566777777888888888888765544433222 2222211
Q ss_pred HHHhCCCChhhhHHHHHHHHH
Q 047845 917 AERIKDTGVSVRKRAIKIIRD 937 (1801)
Q Consensus 917 ~eRi~D~GVsVRKRvIKilkd 937 (1801)
.+-+-|---.+||++++|-.|
T Consensus 565 sd~~~dipsle~~l~~yIse~ 585 (898)
T COG5240 565 SDELGDIPSLELELIGYISED 585 (898)
T ss_pred ccccCCcchhHHhhheeeccc
Confidence 233344444566666555443
No 124
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=30.48 E-value=1.8e+02 Score=36.83 Aligned_cols=132 Identities=21% Similarity=0.235 Sum_probs=89.5
Q ss_pred HHHHHHHHhcCcc----hhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCcccc
Q 047845 1257 LQALGFVLIARPE----HMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVP 1332 (1801)
Q Consensus 1257 L~aLG~lc~s~P~----l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~ 1332 (1801)
+.+|..++.+||+ +....-...+....+.+ + ..++...++-+.-++..++.
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-~-~~vraa~yRilRy~i~d~~~----------------------- 58 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD-S-KEVRAAGYRILRYLISDEES----------------------- 58 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC-c-HHHHHHHHHHHHHHHcCHHH-----------------------
Confidence 4678888889993 33333223333333433 2 55666667766665543221
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHcCCC---hhHHHHHHHHHHHHHhc--CccC-CCcccceeeecccCcchhhHHHH
Q 047845 1333 VAAGAGDTNICGGIIQLYWDKILGRCLDAN---EEVRQTALKIVEVVLRQ--GLVH-PITCVPYLIALETDPQEVNSKLA 1406 (1801)
Q Consensus 1333 v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~---~~vr~~Al~vl~~ilrQ--GLVh-P~~cvPtLIALeTdp~~~Ir~~A 1406 (1801)
...+.|..++.++-.+++.+ ..=|.+|+++|.-++.- |--+ |...+=++||+.-+++...+..|
T Consensus 59 ----------l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~~~D~lr~~c 128 (371)
T PF14664_consen 59 ----------LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEHEDDRLRRIC 128 (371)
T ss_pred ----------HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhCCchHHHHHH
Confidence 12355555666666676654 45688999999888766 5311 67778899999999999999999
Q ss_pred HHHHHHHHhhChhhhhh
Q 047845 1407 HHLLMNMNEKYPAFFES 1423 (1801)
Q Consensus 1407 ~~lL~~L~eKyes~v~~ 1423 (1801)
.+++-+|.=..|.++..
T Consensus 129 letL~El~l~~P~lv~~ 145 (371)
T PF14664_consen 129 LETLCELALLNPELVAE 145 (371)
T ss_pred HHHHHHHHhhCHHHHHH
Confidence 99999999999998853
No 125
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=29.80 E-value=4.4e+02 Score=32.47 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHhhccCCchhHHH---HHHHHHH--HhhhcCC-------CCChhhh
Q 047845 1140 SSVIEELEQDLKHMIVRHS-FLTVVHACIKCLCSVSKISGKGLSTVE---HLILVFF--KYLDSHN-------PDSKQVV 1206 (1801)
Q Consensus 1140 ~~fl~eLe~dL~~lI~k~~-~~~vv~acv~CL~~l~~~~~~~~~~v~---~~i~~~~--~~L~~~~-------~d~~~~l 1206 (1801)
+.+.+++...|.+.+.-.+ ...+-.+|+.||+.++=....+...+. .++...| .+++... .++.+.+
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 3444555555666654332 233447888898777655555666666 4444222 2232221 1223455
Q ss_pred hhHHHHHHHHHhhccccccccccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhc
Q 047845 1207 GRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIA 1266 (1801)
Q Consensus 1207 ~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s 1266 (1801)
.-+|..-|++.-..+... ....+...++.|...+...|.+||..|=++|..++-.
T Consensus 204 ~aAL~aW~lLlt~~~~~~-----~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSK-----LEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 566666666664333210 0112345666777777788999999999999999743
No 126
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=29.09 E-value=7.8e+02 Score=32.80 Aligned_cols=139 Identities=22% Similarity=0.228 Sum_probs=94.6
Q ss_pred chhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHh----cCccccCchhHHHHHHh--hcCCCCh-hHHHHHHHHHH
Q 047845 830 NSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVE----VDPEVLCDKRVQLAVEG--RFCDSAI-SVREAALELLA 902 (1801)
Q Consensus 830 ~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive----~DPsIL~~~~Vq~~I~~--rl~DsS~-sVRDAAldLIG 902 (1801)
-.|..-|++.++.||.+=..+++. .|-+|-|..+++ .||.= ..-|+..+.. |..|+.- -||--.+.++.
T Consensus 41 ~~f~~~flr~vn~IL~~Kk~~si~--dRil~fl~~f~~Y~~~~dpeg--~~~V~~~~~h~lRg~eskdk~VR~r~lqila 116 (885)
T COG5218 41 HEFSEEFLRVVNTILACKKNPSIP--DRILSFLKRFFEYDMPDDPEG--EELVAGTFYHLLRGTESKDKKVRKRSLQILA 116 (885)
T ss_pred HhhHHHHHHHHHHhhccccCCCcH--HHHHHHHHHHHHhcCCCChhh--hHHHHHHHHHHHhcccCcchhHHHHHHHHHH
Confidence 457788899999999876555554 556777777777 44431 2335555443 5556654 89999999999
Q ss_pred HHHH---H----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcc-cCCCchhHHHHHHHHH
Q 047845 903 GILL---H----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISR-VNDDESSIQDLVCKTF 974 (1801)
Q Consensus 903 kI~~---~----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~R-v~DEEdsIkdLa~~tf 974 (1801)
.+.. . |..-..+.|.+|+.|---.||..|++.|-- |.+-.. ...-++..-++.- -+|+-+-|+.+|.-.+
T Consensus 117 ~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~-~Qe~~~-neen~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 117 LLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCY-YQEMEL-NEENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-HHhccC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 8432 2 777788999999999999999999999876 444433 2333443322211 1788888998876543
No 127
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=28.25 E-value=5.7e+02 Score=31.52 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc--cccC--chhHHHHHHhhcCCCChhHHHHHHHHHHH--HH----H--
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDP--EVLC--DKRVQLAVEGRFCDSAISVREAALELLAG--IL----L-- 906 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP--sIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGk--I~----~-- 906 (1801)
-|.-.+..+.+.+.+.|..||+.|..++...+ ..+. ...+..++.+++.=.++-=+-.|..++|- |. .
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 36666777788889999999999999987654 3333 22356667766765555334445556665 22 0
Q ss_pred H-HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCC
Q 047845 907 H-ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEP 982 (1801)
Q Consensus 907 ~-L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~ 982 (1801)
. +.....+.+..-+.|.+.++..|+ -| -.|..|+--+...+..-....+++|+.+|+.-.
T Consensus 124 ~ei~~~~~~~L~~~l~d~s~~~~~R~------~~----------~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~ 184 (309)
T PF05004_consen 124 EEIFEELKPVLKRILTDSSASPKARA------AC----------LEALAICTFVGGSDEEETEELMESLESIFLLSI 184 (309)
T ss_pred HHHHHHHHHHHHHHHhCCccchHHHH------HH----------HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh
Confidence 1 445555556555666655555443 01 014466666655554555566799999999654
No 128
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=28.23 E-value=3.8e+02 Score=32.84 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH-HHHHHHHH
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFC-DSAISVREAALELLAGILLH-ILMLYFVK 915 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~-L~~~yy~~ 915 (1801)
..+..+...+.+..+.+|.-|.-+|+.+= .+..-..+...+. |....||.+|..-+|++... -....++.
T Consensus 74 ~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~ 145 (335)
T COG1413 74 EAVPLLRELLSDEDPRVRDAAADALGELG--------DPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEA 145 (335)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHH
Confidence 34566777788888899999999777652 2322223333455 89999999999999995433 34444444
Q ss_pred HHHHh--------CCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 916 VAERI--------KDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 916 I~eRi--------~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
+.+.. .++=..||..++..+-.+= . .....-++..+.|++..|+.-|...+..+=
T Consensus 146 l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 146 LQDEDSGSAAAALDAALLDVRAAAAEALGELG--D------PEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred hccchhhhhhhhccchHHHHHHHHHHHHHHcC--C------hhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 44333 1122378888888777651 1 123445566677777777777777776544
No 129
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.84 E-value=6e+02 Score=28.26 Aligned_cols=71 Identities=21% Similarity=0.165 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC-ccccCchh---HHHHHHhhcC-CCChhHHHHHHHHHHHHHH
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVD-PEVLCDKR---VQLAVEGRFC-DSAISVREAALELLAGILL 906 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~D-PsIL~~~~---Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~ 906 (1801)
.-+.....|.+.|.++.+.-|-.++.-+..+++.. +.+|.+.. ++. +...+. ++++.++++|+..+++|..
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~-Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA-LLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 34677788899999999999999999999999997 88885432 332 222333 6667899999999998443
No 131
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.59 E-value=2.5e+02 Score=33.24 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=43.6
Q ss_pred hCCCChhhhHHHHHHHHHHhhhC-------CCCc----chHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCC
Q 047845 920 IKDTGVSVRKRAIKIIRDMCTSN-------TNFT----ESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEP 982 (1801)
Q Consensus 920 i~D~GVsVRKRvIKilkdIy~~~-------p~~~----~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~ 982 (1801)
+.|..+.|-||||.+.-.+|-.. ++.+ ....+-.+|+....++.+|||=.|.+.++.+-....
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs 75 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQS 75 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 46888999999999877777441 1111 113334678888888888999999998888877543
No 132
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=26.24 E-value=23 Score=31.17 Aligned_cols=37 Identities=30% Similarity=0.791 Sum_probs=27.0
Q ss_pred cchhhhhcccccccccccccccccc--CCCCCCcchhhhh
Q 047845 671 VEKRVFMCQGCQRLFHADCLGVREH--EVPNRGWNCQLCL 708 (1801)
Q Consensus 671 ~~~lv~~~~g~~r~~~~~~l~~~~~--e~~~~~w~~~~c~ 708 (1801)
.+.+|.+. +|.++||..|++.... +.....|.|..|.
T Consensus 11 ~~~~i~C~-~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 11 DGDMIQCD-SCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp TSSEEEBS-TTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred CCCeEEcC-CCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 35567766 9999999999997543 2233379998875
No 133
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=26.04 E-value=2.6e+02 Score=31.95 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc-Cc-cccC-chhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH---
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVEV-DP-EVLC-DKRVQLAVEGRFCDSAISVREAALELLAG-ILLH--- 907 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~-DP-sIL~-~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~--- 907 (1801)
-|+.||-+...-|.+..---|-=|.+++..+++. .+ .||- -|.+-..|.+.|.=..+.|..++|..+-. +.+.
T Consensus 35 dy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred chhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4789999999999999999999999999999998 33 4554 57777788888888899999999999998 4443
Q ss_pred --HHHHHHHHHHH
Q 047845 908 --ILMLYFVKVAE 918 (1801)
Q Consensus 908 --L~~~yy~~I~e 918 (1801)
---.||++|.-
T Consensus 115 G~aLvPyyrqLLp 127 (183)
T PF10274_consen 115 GEALVPYYRQLLP 127 (183)
T ss_pred hHHHHHHHHHHHH
Confidence 33458888853
No 134
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=25.94 E-value=1.5e+02 Score=32.25 Aligned_cols=58 Identities=19% Similarity=0.352 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhcccchhHHhhhcccCCCCC--CCCCCCCcccCCCCCCCCCccccCCCccc
Q 047845 1728 QKYQEFKNALKEDTVDYAVYTANIKRKRPAP--RKGVRYGRIIGGDDDEDYSDEEWGGGARK 1787 (1801)
Q Consensus 1728 ~~y~~Fk~lm~~d~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1787 (1801)
+.-.+++.+|.+++++-.........++..+ ++..+++|+--- |...+..-|+|=||+
T Consensus 56 ~kl~~~r~~m~~~Gis~~eL~~~~~~~~~~~~~kr~~~paKYky~--dp~G~~~TWTGrGR~ 115 (135)
T PRK10947 56 RKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAARPAKYSYV--DENGETKTWTGQGRT 115 (135)
T ss_pred HHHHHHHHHHHHcCCCHHHHhcccccccccccccCCCCCCCCccc--CCCCCcCcccCCCCC
Confidence 3567899999999999766654332222111 122233333210 223445789997776
No 135
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=25.63 E-value=5.1e+02 Score=31.40 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=54.3
Q ss_pred ccchhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc-cc---cCc----hhHHHHHHhhcC--------CCCh
Q 047845 828 QNNSFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDP-EV---LCD----KRVQLAVEGRFC--------DSAI 891 (1801)
Q Consensus 828 ~~~~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP-sI---L~~----~~Vq~~I~~rl~--------DsS~ 891 (1801)
.+..+++.|.-++=.||..+++..+.+|.++++||..+++.-| .. |.+ +-++.++..++. |.|.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 4567788999999999999999999999999999999998554 33 332 234666666666 5555
Q ss_pred hHHHHHHHHHH
Q 047845 892 SVREAALELLA 902 (1801)
Q Consensus 892 sVRDAAldLIG 902 (1801)
.+=.+|...+-
T Consensus 189 ~Ll~~ay~~L~ 199 (282)
T PF10521_consen 189 ELLQAAYPALL 199 (282)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 136
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=25.55 E-value=1.5e+02 Score=32.20 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhhhcccchhHHhhhc--ccCCCCCCCCCCCCcccCCCCCCCCCccccCCCccc
Q 047845 1724 EDLMQKYQEFKNALKEDTVDYAVYTANI--KRKRPAPRKGVRYGRIIGGDDDEDYSDEEWGGGARK 1787 (1801)
Q Consensus 1724 ~~~~~~y~~Fk~lm~~d~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1787 (1801)
++.......++.+|.+++++-....... ..++...++..+++||.-.| ...+..-|+|=||+
T Consensus 52 ~er~~~l~~i~~~~~~~Git~eeL~~~~~~~~~~~~~kr~~~p~KYr~~d--~~G~~kTWTGrGR~ 115 (134)
T PRK10328 52 AERQEKINTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYRFTD--VNGETKTWTGQGRT 115 (134)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhhhhcccccccccCCCCCCCccCCCC--CCCCcCcccCCCCC
Confidence 4455677889999999988866553321 11111122333444554322 23345789997776
No 137
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=24.99 E-value=2.9e+02 Score=30.38 Aligned_cols=38 Identities=29% Similarity=0.325 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc--cccCch
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDP--EVLCDK 876 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP--sIL~~~ 876 (1801)
.++.++..|.+++++=|.+|+.-|..++..+| .-+..+
T Consensus 5 ~i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k 44 (155)
T PF11640_consen 5 DINSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDK 44 (155)
T ss_pred hHHHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcc
Confidence 35668999999999999999999999998888 445543
No 138
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.94 E-value=2.7e+02 Score=38.06 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHH
Q 047845 1239 NLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQAL 1297 (1801)
Q Consensus 1239 ~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL 1297 (1801)
.++..| +.+..++..||.||.++..+.|.- .+++..++..--.+ -+++++.+..
T Consensus 520 ~v~~~~--~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s-~~~elQQRa~ 573 (866)
T KOG1062|consen 520 KVLMSH--SSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSS-LDTELQQRAV 573 (866)
T ss_pred HHHHhc--cchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhccc-ccHHHHHHHH
Confidence 444444 567889999999999999888876 55677776654333 3455554443
No 139
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=23.92 E-value=3.8e+02 Score=31.36 Aligned_cols=73 Identities=19% Similarity=0.404 Sum_probs=51.1
Q ss_pred HHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCCCCCcccccCCCCC
Q 047845 916 VAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSS 995 (1801)
Q Consensus 916 I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d~ss 995 (1801)
++.++.-+-..+|+|++|.++.......... + |.-..+|-.=.|.-+|++.-+
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~--------------~-~~~~~kLWKGLfy~mWmsDkp------------ 57 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKRSQLL--------------T-ELDMLKLWKGLFYCMWMSDKP------------ 57 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhccccC--------------C-HHHHHHHHHHHHHHHHhcCCc------------
Confidence 4566677778899999999999775554411 3 447999999999999997532
Q ss_pred chHHHHHHHHHHHHHHhcCCCh
Q 047845 996 VPLEVAKKTEQIVEMSRGLPNH 1017 (1801)
Q Consensus 996 ~~~~~~~k~~~iv~vl~~~~~~ 1017 (1801)
.-+.+.+..|.+.+...+..
T Consensus 58 --l~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 58 --LVQEELAEELASLIHSFPSE 77 (217)
T ss_pred --hhHHHHHHHHHHHHHhhcCh
Confidence 33445566666666555443
No 140
>PF11099 M11L: Apoptosis regulator M11L like; InterPro: IPR021119 This entry includes the poxvirus familes F1 and C10. C10 proteins are apoptosis regulators, which function to modulate the apoptotic cascades and thereby favour productive viral replication. One of these, M11L inhibits mitochondrial-dependent apoptosis by mimicking and competing with host proteins for the binding and blocking of Bak and Bax, two executioner proteins []. The poxvirus F1 family are a family of conserved proteins related to Vaccinia virus protein F1L. They have no known function.; PDB: 2O42_B 2JBY_A 2JBX_B 2VTY_A.
Probab=23.74 E-value=3e+02 Score=30.83 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHhcCccccCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCChhhhH
Q 047845 860 RAVSIIVEVDPEVLCDKRVQLAVEGRFC-DSAISVREAALELLAGILLH---------ILMLYFVKVAERIKDTGVSVRK 929 (1801)
Q Consensus 860 K~Ls~ive~DPsIL~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~---------L~~~yy~~I~eRi~D~GVsVRK 929 (1801)
-.+--+++.|-.=..-.+|...|..-+. |++||||=|++.||+.|..+ ...-....|++-+.-.| |
T Consensus 47 n~mcd~i~~~~~S~~I~~Ikn~v~~~L~~D~rpsVkLAtISLiS~I~~k~~~~~~ti~m~~~l~~dIi~~is~~~----~ 122 (167)
T PF11099_consen 47 NSMCDIIEANDISYNIDDIKNEVIEILLSDNRPSVKLATISLISIIIEKWGNKNKTIHMDSLLSNDIIDKISENS----K 122 (167)
T ss_dssp HHHHHHHHCCCCTT-HHHHHHHHHHHCCHT--HHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHSSH----H
T ss_pred HHHHHHHhcccccccHHHHHHHHHHHHhccCCCceeehHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhhhH----H
Confidence 3344445554322234678888888888 99999999999999995443 22334455555554444 5
Q ss_pred HHHHHHHHHh
Q 047845 930 RAIKIIRDMC 939 (1801)
Q Consensus 930 RvIKilkdIy 939 (1801)
-+|+..++.+
T Consensus 123 ~~I~fI~~~~ 132 (167)
T PF11099_consen 123 DFIDFIQKKK 132 (167)
T ss_dssp HHHHHHHCCH
T ss_pred HHHHHHHHhc
Confidence 5666555544
No 141
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=23.65 E-value=5.1e+02 Score=28.24 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=51.0
Q ss_pred hhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHH--------H-HHHHHHH-HHHHhCCC---ChhhhHHHHHHHHHHhhh
Q 047845 876 KRVQLAVEGRFCD-SAISVREAALELLAGILLH--------I-LMLYFVK-VAERIKDT---GVSVRKRAIKIIRDMCTS 941 (1801)
Q Consensus 876 ~~Vq~~I~~rl~D-sS~sVRDAAldLIGkI~~~--------L-~~~yy~~-I~eRi~D~---GVsVRKRvIKilkdIy~~ 941 (1801)
.+..++|.+|+.. ..+.|-=-||.|+.-+..+ + ..+|.+. +...+.+. ...|++|++.+++.-...
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 4567778888873 3555555577777663221 3 2467776 66666643 458999999999988766
Q ss_pred CCC---CcchHHHHHHhh
Q 047845 942 NTN---FTESTTACIEII 956 (1801)
Q Consensus 942 ~p~---~~~~~~i~~~iL 956 (1801)
.++ ++.+.++...|.
T Consensus 117 f~~~~~l~~i~~~y~~L~ 134 (141)
T cd03565 117 FRGSPDLTGVVEVYEELK 134 (141)
T ss_pred hCCCccchHHHHHHHHHH
Confidence 543 344445554444
No 142
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=23.54 E-value=4.2e+02 Score=33.92 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc-cccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDP-EVLC--DKRVQLAVEGRFCDSAISVREAALELLAGILLH--- 907 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP-sIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--- 907 (1801)
+.|..++..|+....+.....|+.-+.+|+.|+..=| +|+. -+.+...+.+.+.=+.+.||-|+++.+-.+...
T Consensus 319 R~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 319 RFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 5778888888888887777799999999999999777 4443 345666667777766678999999999984432
Q ss_pred HHHHHHHHHHHHhC
Q 047845 908 ILMLYFVKVAERIK 921 (1801)
Q Consensus 908 L~~~yy~~I~eRi~ 921 (1801)
+...|.+.|+.|+.
T Consensus 399 ~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 399 LISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHHHHH
Confidence 77778888887764
No 143
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.83 E-value=1.6e+02 Score=39.82 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=15.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHH
Q 047845 610 SKDVSARSMAIDLLGTIAARLK 631 (1801)
Q Consensus 610 s~d~~ar~~ALdlLG~IaA~L~ 631 (1801)
+..+..|..|+=.|-.+|.+.=
T Consensus 293 sp~~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 293 SPKVALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred CcHHHHHHHHHHHHHHHHHhCC
Confidence 3446678888888888877654
No 144
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=22.15 E-value=1.4e+03 Score=32.24 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc--cccC-chhHHHHHHhhcCCCChhHHHHHHHHHHH-HHH-H-HH
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDP--EVLC-DKRVQLAVEGRFCDSAISVREAALELLAG-ILL-H-IL 909 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP--sIL~-~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~-~-L~ 909 (1801)
|-.|.-.+++-....--..|+-=+++|+.++..=| .|+. -|+.+..+.+++.=+.+.||=+++..|.- ... + |.
T Consensus 865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 34444444444432223578888999999998776 3444 57788999999999999999999999988 332 2 44
Q ss_pred HH----HHHHHHHHhCCCC---hhhhHHHHHHHHHHhhhCCC---CcchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 910 ML----YFVKVAERIKDTG---VSVRKRAIKIIRDMCTSNTN---FTESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 910 ~~----yy~~I~eRi~D~G---VsVRKRvIKilkdIy~~~p~---~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
+. +.+.++.--.|.. +.||=-++++|..+-.+.|. ++-++++...|+.-..|.---||+.|..+= .-|+
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR-~~W~ 1023 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR-QNWY 1023 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh-hhhh
Confidence 44 4455555555555 89999999999998876776 245678888888888998888888888874 4576
Q ss_pred C
Q 047845 980 E 980 (1801)
Q Consensus 980 ~ 980 (1801)
.
T Consensus 1024 ~ 1024 (1030)
T KOG1967|consen 1024 M 1024 (1030)
T ss_pred h
Confidence 4
No 145
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=21.93 E-value=1.5e+03 Score=27.99 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=34.5
Q ss_pred eeeecccCc--chhhHHHHHHHHHHHHhhChhhhhhhhhhHHH
Q 047845 1390 YLIALETDP--QEVNSKLAHHLLMNMNEKYPAFFESRLGDGLQ 1430 (1801)
Q Consensus 1390 tLIALeTdp--~~~Ir~~A~~lL~~L~eKyes~v~~~~~~GI~ 1430 (1801)
.+|-+.+++ .+.+|..|...++.+....++++...+..|+.
T Consensus 208 a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~l~~~li~~l~ 250 (339)
T PF12074_consen 208 AFIYLLCSSNVSWKVRRAALSALKKLYASNPELLSKSLISGLW 250 (339)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 356666677 78899999999999999999998888877775
No 146
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=21.48 E-value=6e+02 Score=26.21 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------C
Q 047845 857 KALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAERI---------------K 921 (1801)
Q Consensus 857 KALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~eRi---------------~ 921 (1801)
+.+.-|..++..++.- -..+..+|..|+.+..+-|-=-||.|+-.+..+-...|...+..+. .
T Consensus 19 ~~i~~i~d~~~~~~~~--~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~ 96 (115)
T cd00197 19 PLIMEICDLINETNVG--PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGD 96 (115)
T ss_pred HHHHHHHHHHHCCCcc--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccC
Q ss_pred CCChhhhHHHHHHHH
Q 047845 922 DTGVSVRKRAIKIIR 936 (1801)
Q Consensus 922 D~GVsVRKRvIKilk 936 (1801)
|.|+.||+++..++.
T Consensus 97 ~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 97 DVSTNVREKAIELVQ 111 (115)
T ss_pred CCChHHHHHHHHHHH
No 147
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.27 E-value=2.5e+02 Score=39.32 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=64.5
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH-HHHHHHHHHHH
Q 047845 841 HLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH-ILMLYFVKVAE 918 (1801)
Q Consensus 841 ~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~-L~~~yy~~I~e 918 (1801)
..++..|.++.|-||+-|+=+|+.++..-.. -.|+.+.|+|.-++|=-+ +..+ ++.+..-+++.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d--------------~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~ 710 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSD--------------NFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLA 710 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccccc--------------ccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHH
Confidence 4566677889999999999999999863211 178888888888775555 5444 55555568889
Q ss_pred HhCCCChhhhHHHHHHHHHHhhhC
Q 047845 919 RIKDTGVSVRKRAIKIIRDMCTSN 942 (1801)
Q Consensus 919 Ri~D~GVsVRKRvIKilkdIy~~~ 942 (1801)
++.|-++-|||-|.--+-.+-..+
T Consensus 711 ~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred HHhccchHHHHHHHHHHHHHHHhh
Confidence 999999999999876665554333
No 148
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=21.14 E-value=46 Score=44.23 Aligned_cols=44 Identities=27% Similarity=0.739 Sum_probs=33.9
Q ss_pred ccccccchhhhhccccccc-cccccccccccCCCCCCcchhhhhh
Q 047845 666 CLDGRVEKRVFMCQGCQRL-FHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 666 ~l~~~~~~lv~~~~g~~r~-~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
|.-...++++.++++|... +|.|||.-...|.+...|.|..|.-
T Consensus 221 C~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 221 CTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred eccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 3334455665555699766 9999999888888888999999964
No 149
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=20.15 E-value=1.8e+02 Score=32.30 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHhc-----CCChhHHhHHHHHHHHHHhcCc---cccCchhHHHHHHhhcCCCChhHHHHHHHHHHH
Q 047845 834 RGFDKILHLLLVSLR-----ENSPIIRAKALRAVSIIVEVDP---EVLCDKRVQLAVEGRFCDSAISVREAALELLAG 903 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~-----~~s~~vRSKALK~Ls~ive~DP---sIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk 903 (1801)
++.+.+++.|-.... +..+.+-..+|+||-.|+.... .|+..+..-..|-.++...++.+|..|+|+++-
T Consensus 107 ~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~ 184 (187)
T PF06371_consen 107 GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAA 184 (187)
T ss_dssp HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 455566655544433 2344567889999999888765 566777777777778888889999999999875
Done!