Query 047845
Match_columns 1801
No_of_seqs 191 out of 242
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:54:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 98.7 5.2E-06 1.8E-10 105.1 34.1 489 837-1413 86-585 (588)
2 2vgl_B AP-2 complex subunit be 98.7 1.3E-06 4.5E-11 112.5 28.4 143 831-979 46-189 (591)
3 4fdd_A Transportin-1; heat rep 98.7 8.9E-06 3E-10 108.9 36.2 145 832-976 122-282 (852)
4 2bpt_A Importin beta-1 subunit 98.5 0.00022 7.5E-09 94.7 41.8 484 835-1419 131-672 (861)
5 1u6g_C TIP120 protein, CAND1; 98.5 0.00019 6.6E-09 99.9 41.5 144 834-978 44-203 (1230)
6 2vgl_B AP-2 complex subunit be 98.5 2E-05 6.9E-10 101.5 28.6 61 1236-1297 464-524 (591)
7 1qgr_A Protein (importin beta 98.5 0.00014 4.7E-09 96.9 37.6 141 836-978 319-478 (876)
8 4fdd_A Transportin-1; heat rep 98.5 0.00029 1E-08 94.3 40.4 517 832-1425 209-794 (852)
9 1qgr_A Protein (importin beta 98.4 0.00027 9.3E-09 94.0 39.3 375 834-1269 124-541 (876)
10 1b3u_A Protein (protein phosph 98.4 1.5E-05 5.2E-10 100.9 25.7 445 840-1419 12-474 (588)
11 1u6g_C TIP120 protein, CAND1; 98.3 0.00031 1E-08 97.9 37.2 142 835-976 130-281 (1230)
12 1w63_A Adapter-related protein 98.3 0.00023 7.7E-09 92.3 31.5 102 839-944 108-212 (618)
13 1w63_A Adapter-related protein 98.3 0.00032 1.1E-08 90.9 32.8 130 845-978 77-207 (618)
14 2bpt_A Importin beta-1 subunit 98.2 0.0034 1.2E-07 83.3 41.8 140 838-978 224-397 (861)
15 2vgl_A Adaptor protein complex 97.8 0.0055 1.9E-07 79.4 31.6 102 839-944 112-220 (621)
16 2vgl_A Adaptor protein complex 97.7 0.002 6.9E-08 83.5 24.9 136 842-979 78-216 (621)
17 1wa5_B Importin alpha subunit; 97.7 0.0027 9.4E-08 80.1 25.1 141 840-980 89-245 (530)
18 2z6g_A B-catenin; FULL-length, 97.6 0.0053 1.8E-07 81.7 27.7 141 838-979 150-304 (780)
19 2jdq_A Importin alpha-1 subuni 97.6 0.00082 2.8E-08 82.1 17.7 141 840-980 22-180 (450)
20 4b8j_A Importin subunit alpha- 97.5 0.0015 5E-08 82.4 19.3 141 840-980 76-233 (528)
21 1ibr_B P95, importin beta-1 su 97.5 0.001 3.6E-08 81.3 17.4 140 835-974 125-283 (462)
22 1jdh_A Beta-catenin; beta-cate 97.5 0.015 5.1E-07 72.6 27.7 138 839-976 18-169 (529)
23 2qk2_A LP04448P; mini spindles 97.4 0.001 3.5E-08 75.3 13.9 145 835-979 53-205 (242)
24 1wa5_B Importin alpha subunit; 97.3 0.0086 3E-07 75.5 22.7 140 839-978 131-285 (530)
25 1ibr_B P95, importin beta-1 su 97.3 0.015 5E-07 71.0 23.1 141 836-977 33-201 (462)
26 2qk2_A LP04448P; mini spindles 97.2 0.0041 1.4E-07 70.3 16.3 133 843-979 20-162 (242)
27 2z6h_A Catenin beta-1, beta-ca 97.2 0.24 8.1E-06 64.1 34.7 140 840-979 16-169 (644)
28 4b8j_A Importin subunit alpha- 97.1 0.027 9.3E-07 70.8 23.4 385 878-1415 76-496 (528)
29 3ltj_A Alpharep-4; protein eng 97.0 0.0034 1.2E-07 68.5 12.4 120 839-977 77-196 (201)
30 2qk1_A Protein STU2; STU2P, XM 97.0 0.0075 2.6E-07 69.2 15.5 146 833-978 55-219 (249)
31 2jdq_A Importin alpha-1 subuni 97.0 0.037 1.3E-06 67.4 22.2 141 839-979 65-221 (450)
32 3ltm_A Alpha-REP4; protein eng 96.8 0.0052 1.8E-07 67.5 11.9 125 839-982 82-206 (211)
33 4db6_A Armadillo repeat protei 96.7 0.0078 2.7E-07 65.8 12.0 140 838-977 54-207 (210)
34 3ltj_A Alpharep-4; protein eng 96.6 0.011 3.7E-07 64.5 12.4 120 839-977 46-165 (201)
35 3ltm_A Alpha-REP4; protein eng 96.6 0.012 4.2E-07 64.6 12.4 120 839-977 51-170 (211)
36 1oyz_A Hypothetical protein YI 96.5 0.015 5.2E-07 66.7 13.4 134 834-978 86-220 (280)
37 1te4_A Conserved protein MTH18 96.5 0.0011 3.7E-08 68.1 3.2 126 832-977 6-131 (131)
38 2qk1_A Protein STU2; STU2P, XM 96.3 0.066 2.2E-06 61.3 16.4 115 830-944 95-224 (249)
39 4db8_A Armadillo-repeat protei 96.2 0.02 6.7E-07 64.4 11.6 140 839-978 97-250 (252)
40 4db6_A Armadillo repeat protei 96.2 0.014 4.9E-07 63.7 10.1 144 837-980 11-168 (210)
41 4hxt_A De novo protein OR329; 96.2 0.039 1.3E-06 61.4 13.8 142 838-979 44-199 (252)
42 4hxt_A De novo protein OR329; 96.1 0.024 8.2E-07 63.1 11.6 145 839-983 87-245 (252)
43 1oyz_A Hypothetical protein YI 95.9 0.049 1.7E-06 62.5 13.3 128 840-977 25-155 (280)
44 3tpo_A Importin subunit alpha- 95.8 0.54 1.9E-05 59.3 23.3 104 840-944 78-195 (529)
45 4db8_A Armadillo-repeat protei 95.6 0.029 1E-06 62.9 9.4 141 839-979 55-209 (252)
46 3gs3_A Symplekin, LD45768P; he 95.5 0.53 1.8E-05 54.2 19.4 143 834-979 12-173 (257)
47 3ul1_B Importin subunit alpha- 95.5 0.99 3.4E-05 56.7 23.8 103 841-944 60-176 (510)
48 2z6h_A Catenin beta-1, beta-ca 95.5 1.6 5.5E-05 56.4 26.4 141 838-979 140-292 (644)
49 3o2t_A Symplekin; heat repeat, 95.2 0.48 1.6E-05 57.5 18.5 125 853-979 40-183 (386)
50 3now_A UNC-45 protein, SD10334 95.0 15 0.00051 48.8 33.5 142 1246-1419 546-698 (810)
51 3ibv_A Exportin-T; karyopherin 94.9 0.31 1.1E-05 66.4 17.9 74 832-907 187-261 (980)
52 1xqr_A HSPBP1 protein; armadil 94.4 0.15 5.1E-06 60.0 11.2 137 841-978 84-237 (296)
53 2of3_A ZYG-9; multifunctional 94.3 0.89 3E-05 52.6 17.2 148 831-980 80-237 (266)
54 1te4_A Conserved protein MTH18 94.3 0.074 2.5E-06 54.2 7.5 86 841-937 45-130 (131)
55 2z6g_A B-catenin; FULL-length, 94.3 2.3 7.7E-05 56.5 23.7 139 838-977 276-426 (780)
56 1xqr_A HSPBP1 protein; armadil 92.5 0.97 3.3E-05 53.0 13.9 160 819-979 102-287 (296)
57 2x19_B Importin-13; nuclear tr 92.4 15 0.00051 49.5 27.4 108 1160-1281 463-571 (963)
58 4ffb_C Protein STU2; tubulin f 92.3 0.81 2.8E-05 52.7 12.7 105 835-942 99-214 (278)
59 3tjz_B Coatomer subunit gamma; 91.7 0.49 1.7E-05 57.0 10.2 97 840-940 106-205 (355)
60 2x1g_F Cadmus; transport prote 90.9 57 0.002 43.9 32.7 97 1160-1268 520-618 (971)
61 4ffb_C Protein STU2; tubulin f 90.1 0.66 2.2E-05 53.5 9.1 144 838-981 55-216 (278)
62 3m1i_C Exportin-1; heat repeat 89.7 8.3 0.00028 52.8 20.9 106 1160-1272 467-576 (1049)
63 3opb_A SWI5-dependent HO expre 89.5 65 0.0022 42.5 32.5 97 1342-1438 597-708 (778)
64 2iw3_A Elongation factor 3A; a 87.5 26 0.00087 47.6 22.5 145 817-964 70-227 (986)
65 2x1g_F Cadmus; transport prote 86.3 51 0.0017 44.4 25.2 89 850-942 476-574 (971)
66 3tpo_A Importin subunit alpha- 85.3 2 7E-05 54.0 10.0 139 839-978 294-448 (529)
67 1jdh_A Beta-catenin; beta-cate 85.0 5.1 0.00018 49.5 13.4 139 838-977 143-293 (529)
68 3ul1_B Importin subunit alpha- 82.8 1.9 6.5E-05 54.1 8.1 140 839-979 275-430 (510)
69 2of3_A ZYG-9; multifunctional 82.1 4 0.00014 47.2 9.7 104 837-944 131-240 (266)
70 4hat_C Exportin-1; heat repeat 81.6 90 0.0031 42.7 24.3 73 831-905 187-262 (1023)
71 3grl_A General vesicular trans 78.8 13 0.00043 48.0 13.4 153 1250-1419 36-199 (651)
72 2db0_A 253AA long hypothetical 78.4 22 0.00076 38.8 13.0 150 829-981 60-248 (253)
73 3l6x_A Catenin delta-1; cateni 76.6 14 0.00047 47.4 13.1 142 839-980 309-477 (584)
74 4gmo_A Putative uncharacterize 74.6 2.3 7.8E-05 55.7 5.3 60 844-904 40-103 (684)
75 3now_A UNC-45 protein, SD10334 74.2 10 0.00035 50.4 11.3 138 839-978 624-781 (810)
76 3b2a_A TON_1937, putative unch 72.9 33 0.0011 39.0 13.0 145 836-983 73-222 (265)
77 3tjz_B Coatomer subunit gamma; 72.4 28 0.00094 41.9 13.5 133 841-978 71-204 (355)
78 3u0r_A Apoptosis inhibitor 5; 70.7 7 0.00024 48.4 7.8 88 889-980 40-130 (507)
79 1wa5_C Importin alpha RE-expor 70.5 24 0.00081 47.8 14.0 107 835-941 396-526 (960)
80 2k16_A Transcription initiatio 69.9 1.8 6.3E-05 40.1 2.0 48 661-709 18-67 (75)
81 3a6p_A Exportin-5; exportin-5, 69.9 2.2E+02 0.0074 39.6 23.6 123 851-979 220-376 (1204)
82 1wa5_C Importin alpha RE-expor 65.8 3.6E+02 0.012 36.2 29.2 129 849-979 372-525 (960)
83 2lv9_A Histone-lysine N-methyl 65.6 2.3 7.8E-05 41.8 1.8 45 662-708 29-74 (98)
84 2e6r_A Jumonji/ARID domain-con 64.0 5 0.00017 38.9 3.8 45 665-710 21-66 (92)
85 3opb_A SWI5-dependent HO expre 62.6 16 0.00055 48.1 9.3 126 855-981 576-731 (778)
86 3nmw_A APC variant protein; AR 60.6 64 0.0022 38.5 13.6 142 837-978 126-291 (354)
87 1xm9_A Plakophilin 1; armadill 58.8 25 0.00087 43.3 9.9 141 839-979 284-449 (457)
88 3nmz_A APC variant protein; pr 57.7 79 0.0027 39.2 14.0 141 837-978 242-407 (458)
89 1f62_A Transcription factor WS 57.4 3 0.0001 35.7 0.8 36 672-708 13-48 (51)
90 3b2a_A TON_1937, putative unch 56.2 1.4E+02 0.0048 34.0 14.0 142 1239-1416 36-180 (265)
91 2rsd_A E3 SUMO-protein ligase 54.6 7.9 0.00027 35.3 3.2 50 661-710 10-65 (68)
92 3nmw_A APC variant protein; AR 54.1 66 0.0023 38.4 12.2 140 841-980 173-335 (354)
93 1xwh_A Autoimmune regulator; P 53.6 4.8 0.00016 36.5 1.6 37 672-709 18-54 (66)
94 2jmi_A Protein YNG1, ING1 homo 52.3 5.5 0.00019 38.5 1.9 45 661-708 26-74 (90)
95 3g2s_A C-terminal fragment of 52.1 77 0.0026 33.3 10.8 91 861-953 34-139 (149)
96 2vnf_A ING 4, P29ING4, inhibit 51.7 5.1 0.00017 35.7 1.4 46 661-709 10-58 (60)
97 1mm2_A MI2-beta; PHD, zinc fin 51.0 5.9 0.0002 35.4 1.7 37 672-709 19-55 (61)
98 2lri_C Autoimmune regulator; Z 50.8 4.2 0.00014 37.1 0.7 37 672-709 22-58 (66)
99 3l9t_A Putative uncharacterize 50.3 82 0.0028 35.7 11.2 145 1234-1423 69-215 (240)
100 2l5u_A Chromodomain-helicase-D 50.0 4.4 0.00015 36.2 0.8 37 672-709 21-57 (61)
101 3nmz_A APC variant protein; pr 49.9 78 0.0027 39.2 12.2 139 841-979 289-450 (458)
102 3o70_A PHD finger protein 13; 49.9 8 0.00027 35.4 2.5 47 661-709 19-66 (68)
103 1wee_A PHD finger family prote 49.4 10 0.00035 34.9 3.1 48 661-709 16-65 (72)
104 1xm9_A Plakophilin 1; armadill 49.0 85 0.0029 38.5 12.4 102 841-944 5-119 (457)
105 2db0_A 253AA long hypothetical 49.0 26 0.0009 38.3 6.5 66 836-904 179-244 (253)
106 2puy_A PHD finger protein 21A; 48.3 6.8 0.00023 34.7 1.7 37 672-709 15-51 (60)
107 3c6w_A P28ING5, inhibitor of g 48.0 6 0.00021 35.2 1.3 46 661-709 9-57 (59)
108 3gs3_A Symplekin, LD45768P; he 47.7 34 0.0011 39.3 7.8 68 908-977 50-117 (257)
109 2yql_A PHD finger protein 21A; 47.0 7.1 0.00024 34.2 1.6 36 672-708 19-54 (56)
110 2g6q_A Inhibitor of growth pro 46.3 6.3 0.00021 35.4 1.1 46 661-709 11-59 (62)
111 1wen_A Inhibitor of growth fam 45.8 11 0.00039 34.7 2.8 46 661-709 16-64 (71)
112 1juq_A ADP-ribosylation factor 45.6 98 0.0033 33.2 10.6 90 861-952 36-140 (171)
113 2l43_A N-teminal domain from h 44.5 6.9 0.00024 37.6 1.2 46 662-710 27-75 (88)
114 2ku3_A Bromodomain-containing 44.2 8.2 0.00028 35.6 1.6 37 671-710 30-66 (71)
115 2xb1_A Pygopus homolog 2, B-ce 44.1 5.4 0.00018 39.6 0.4 39 672-710 17-61 (105)
116 3grl_A General vesicular trans 43.6 37 0.0013 43.7 7.9 106 838-943 122-244 (651)
117 1weu_A Inhibitor of growth fam 42.1 10 0.00036 36.7 2.0 47 660-709 35-84 (91)
118 1mhq_A ADP-ribosylation factor 41.8 95 0.0032 32.5 9.5 76 875-950 36-126 (148)
119 1wew_A DNA-binding family prot 41.2 13 0.00043 34.9 2.4 49 661-709 16-71 (78)
120 3o2t_A Symplekin; heat repeat, 40.3 28 0.00097 42.2 5.9 68 908-977 60-127 (386)
121 2iw3_A Elongation factor 3A; a 40.2 57 0.002 44.2 9.3 93 837-930 132-231 (986)
122 3o7a_A PHD finger protein 13 v 40.1 11 0.00037 32.5 1.6 45 662-708 5-50 (52)
123 1wem_A Death associated transc 39.0 6.4 0.00022 36.6 -0.0 48 661-709 16-69 (76)
124 1we9_A PHD finger family prote 38.4 11 0.00037 33.8 1.4 47 662-709 7-57 (64)
125 2x19_B Importin-13; nuclear tr 37.6 8.6E+02 0.029 32.2 39.9 139 836-978 443-598 (963)
126 4ady_A RPN2, 26S proteasome re 36.2 1.1E+02 0.0038 41.2 11.0 134 834-977 541-674 (963)
127 1x4i_A Inhibitor of growth pro 35.9 11 0.00039 34.6 1.2 46 662-710 7-55 (70)
128 3o36_A Transcription intermedi 35.9 13 0.00045 40.3 1.9 43 665-710 9-51 (184)
129 2ri7_A Nucleosome-remodeling f 35.4 7.3 0.00025 41.9 -0.3 49 661-710 8-59 (174)
130 3ldz_A STAM-1, signal transduc 35.3 2E+02 0.0067 29.7 10.6 84 862-947 29-121 (140)
131 1wev_A Riken cDNA 1110020M19; 35.2 13 0.00044 35.7 1.5 38 672-710 31-72 (88)
132 3u5n_A E3 ubiquitin-protein li 34.7 12 0.00041 41.4 1.4 43 665-710 12-54 (207)
133 1x5b_A Signal transducing adap 34.2 2.5E+02 0.0086 29.7 11.5 86 861-948 38-133 (163)
134 2jby_A M11L protein; apoptosis 33.3 41 0.0014 33.9 4.6 33 875-907 74-106 (145)
135 1fp0_A KAP-1 corepressor; PHD 32.8 12 0.00041 36.1 0.8 37 672-709 35-71 (88)
136 1elk_A Target of MYB1; superhe 31.4 2.4E+02 0.0081 29.7 10.6 94 858-953 36-146 (157)
137 3ibv_A Exportin-T; karyopherin 31.1 62 0.0021 44.1 7.6 110 835-944 437-570 (980)
138 1wep_A PHF8; structural genomi 31.0 8.3 0.00028 36.2 -0.6 48 661-709 12-62 (79)
139 2ro1_A Transcription intermedi 30.4 16 0.00055 39.9 1.4 37 673-710 13-49 (189)
140 1dvp_A HRS, hepatocyte growth 29.6 3.4E+02 0.012 29.9 12.2 83 859-943 26-118 (220)
141 2yt5_A Metal-response element- 28.9 14 0.00049 33.1 0.6 37 672-709 21-60 (66)
142 3ask_A E3 ubiquitin-protein li 28.1 23 0.00077 39.9 2.1 44 665-709 179-224 (226)
143 3asl_A E3 ubiquitin-protein li 26.8 23 0.0008 32.4 1.6 38 671-709 30-68 (70)
144 3kv5_D JMJC domain-containing 24.5 13 0.00045 46.5 -0.7 49 661-710 37-88 (488)
145 2kgg_A Histone demethylase jar 24.0 9.4 0.00032 32.9 -1.5 35 673-707 17-51 (52)
146 2vpb_A Hpygo1, pygopus homolog 24.0 13 0.00043 33.8 -0.7 36 673-708 23-64 (65)
147 2e6s_A E3 ubiquitin-protein li 23.8 26 0.00087 32.9 1.3 38 670-708 37-75 (77)
148 2kwj_A Zinc finger protein DPF 23.3 32 0.0011 34.4 2.0 37 672-709 71-107 (114)
149 3l9t_A Putative uncharacterize 23.3 5E+02 0.017 29.4 11.8 132 836-976 69-204 (240)
150 3tt9_A Plakophilin-2; cell adh 23.1 4.7E+02 0.016 29.2 11.8 99 841-940 11-124 (233)
151 1vdy_A Hypothetical protein (R 22.7 1.4E+02 0.0048 31.1 6.7 36 835-870 46-81 (140)
152 3oc3_A Helicase MOT1, MOT1; re 21.5 1.2E+03 0.039 30.1 15.2 211 836-1132 173-403 (800)
153 3pur_A Lysine-specific demethy 20.6 26 0.0009 43.9 0.9 39 672-710 55-94 (528)
154 3l6x_A Catenin delta-1; cateni 20.5 3.6E+02 0.012 34.4 11.3 100 840-940 50-163 (584)
155 3kqi_A GRC5, PHD finger protei 20.1 26 0.00089 32.4 0.5 47 662-709 11-60 (75)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.75 E-value=5.2e-06 Score=105.12 Aligned_cols=489 Identities=14% Similarity=0.070 Sum_probs=260.2
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH----HHHHH
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH----ILMLY 912 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~----L~~~y 912 (1801)
..++..|...+.++.+.+|.+|+.+|..+.+.-|.--..+.+...+.....++++.+|.+|..++|.+..+ .....
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34555666666788899999999999999987653211223445555555688899999999999985433 44667
Q ss_pred HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCCCCCcccccCC
Q 047845 913 FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGD 992 (1801)
Q Consensus 913 y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d 992 (1801)
.+.+...+.|+...||+.+++.+..++...+.-.....+.-.++.-.+|+++.||..|.+++..+.-.-..
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--------- 236 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--------- 236 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH---------
Confidence 78888888999999999999999999876553111123334455556899999999999998876532100
Q ss_pred CCCchHHHHHHHHHHHHHHhcC-CChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 047845 993 GSSVPLEVAKKTEQIVEMSRGL-PNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQVEEM 1071 (1801)
Q Consensus 993 ~ss~~~~~~~k~~~iv~vl~~~-~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~lee~ 1071 (1801)
. .....++..+... .+..|-+ +.... ..+.......+. ..+.+.++..++.+=.
T Consensus 237 -----~---~~~~~~~~~l~~~~~d~~~~v---R~~a~-~~l~~l~~~~~~------------~~~~~~l~~~l~~~l~- 291 (588)
T 1b3u_A 237 -----E---DLEALVMPTLRQAAEDKSWRV---RYMVA-DKFTELQKAVGP------------EITKTDLVPAFQNLMK- 291 (588)
T ss_dssp -----H---HHHHHTHHHHHHHHTCSSHHH---HHHHH-HTHHHHHHHHCH------------HHHHHTHHHHHHHHHT-
T ss_pred -----H---HHHHHHHHHHHHHccCCCHHH---HHHHH-HHHHHHHHHhCc------------ccchhHHHHHHHHHhC-
Confidence 0 0111122211110 0111100 00000 000000000000 0011223333333211
Q ss_pred ccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccCh--HHH-HHhhcceeeeccCCChh-HHHHHH
Q 047845 1072 NNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDN--RVV-AKFLESVIFIIDALPSS-VIEELE 1147 (1801)
Q Consensus 1072 ~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~--~~~-~~il~~Vv~i~~~Lp~~-fl~eLe 1147 (1801)
+++.+++. .+..+|..|+..-+.-.. ...+...+.|++....++ ..+ ......+-.+...+++. +...+.
T Consensus 292 -d~~~~vr~-~a~~~l~~~~~~~~~~~~----~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~ 365 (588)
T 1b3u_A 292 -DCEAEVRA-AASHKVKEFCENLSADCR----ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365 (588)
T ss_dssp -CSSHHHHH-HHHHHHHHHHHTSCTTTH----HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTH
T ss_pred -CCcHHHHH-HHHHHHHHHHHHhChhhh----hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 11222222 244566666654321100 002455666776542111 111 11111111112222222 223333
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhcccccccc
Q 047845 1148 QDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTS 1227 (1801)
Q Consensus 1148 ~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~ 1227 (1801)
..|..++. .....|-.+++.+|..+....+.. .....++..+...+.. .+......++.++|.+++.+..
T Consensus 366 p~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~lp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~~----- 435 (588)
T 1b3u_A 366 PLFLAQLK-DECPEVRLNIISNLDCVNEVIGIR-QLSQSLLPAIVELAED---AKWRVRLAIIEYMPLLAGQLGV----- 435 (588)
T ss_dssp HHHHHHHT-CSCHHHHHHHHTTCHHHHHHSCHH-HHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCG-----
T ss_pred HHHHHHhC-CCchHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHcCH-----
Confidence 33334443 233456677788888887665432 1223333333333321 2222222334456655543211
Q ss_pred ccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Q 047845 1228 YEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDA 1307 (1801)
Q Consensus 1228 ~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~e 1307 (1801)
.......++.+...+...+..||..|+.+||.++...+.-+..+.+.+.+...+.+ .+..++..++..+-.+...-
T Consensus 436 ---~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~-~~~~~R~~a~~~l~~l~~~~ 511 (588)
T 1b3u_A 436 ---EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGD-PNYLHRMTTLFCINVLSEVC 511 (588)
T ss_dssp ---GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTC-SCHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHhc
Confidence 01113455666666666778899999999999997765433233344444443332 23344444443333321100
Q ss_pred hhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccC--CC
Q 047845 1308 ENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVH--PI 1385 (1801)
Q Consensus 1308 E~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVh--P~ 1385 (1801)
|. .......++.++...-++++.||..|+..+..+.+.-=.+ +.
T Consensus 512 ----------------------------~~------~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~ 557 (588)
T 1b3u_A 512 ----------------------------GQ------DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS 557 (588)
T ss_dssp ----------------------------HH------HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred ----------------------------CH------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHH
Confidence 00 1145567777778778889999999999999997631011 12
Q ss_pred cccceeeecccCcchhhHHHHHHHHHHH
Q 047845 1386 TCVPYLIALETDPQEVNSKLAHHLLMNM 1413 (1801)
Q Consensus 1386 ~cvPtLIALeTdp~~~Ir~~A~~lL~~L 1413 (1801)
..+|.|..|.+|+++.+|..|...+..+
T Consensus 558 ~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 558 EVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 5678888899999999999999887655
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.73 E-value=1.3e-06 Score=112.53 Aligned_cols=143 Identities=13% Similarity=0.087 Sum_probs=113.9
Q ss_pred hhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH-HHHH
Q 047845 831 SFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL-LHIL 909 (1801)
Q Consensus 831 ~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~-~~L~ 909 (1801)
+....|..++ ..+.++...+|--+--.+..+.+.+|.++- .+-..+.+-+.|+.+.||..|+.-+|++. ..+.
T Consensus 46 d~~~~~~~vi----~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~--l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~ 119 (591)
T 2vgl_B 46 DVSSLFPDVV----NCMQTDNLELKKLVYLYLMNYAKSQPDMAI--MAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKIT 119 (591)
T ss_dssp CCGGGHHHHH----HTTSSSCHHHHHHHHHHHHHHHHHSHHHHH--TTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGH
T ss_pred ChHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHcccCchHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHH
Confidence 3344454444 467888899998888888888888876642 23467778899999999999999999944 4477
Q ss_pred HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 910 MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 910 ~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
+...+.|...+.|+...|||.|+..+..||...|+.-........+...++|++.+|+.-|...|.++.-
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999999888732212355677788899999999999999999763
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.71 E-value=8.9e-06 Score=108.94 Aligned_cols=145 Identities=14% Similarity=0.136 Sum_probs=113.4
Q ss_pred hhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCc-------hhHHHHHHhhcCCCChhHHHHHHHHHHH-
Q 047845 832 FSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCD-------KRVQLAVEGRFCDSAISVREAALELLAG- 903 (1801)
Q Consensus 832 f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~-------~~Vq~~I~~rl~DsS~sVRDAAldLIGk- 903 (1801)
+...+..++..|+..+.++.+.+|-.|+.+|+.+.+.-|..+.. +.+...+.+.+.|+++.||.+|+..++.
T Consensus 122 ~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 122 ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF 201 (852)
T ss_dssp TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTT
T ss_pred CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44567788899999999989999999999999999988776542 3455566678889999999999999988
Q ss_pred HHH--H----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC--cchHHHHHHhhcccCCCchhHHHHHHHHHH
Q 047845 904 ILL--H----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF--TESTTACIEIISRVNDDESSIQDLVCKTFY 975 (1801)
Q Consensus 904 I~~--~----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~--~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~ 975 (1801)
+.. . ..+.+.+.+.....|....||+.+++.+-.++...|++ +....+..-++..+.|+++.|+..|.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 202 IISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp TTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 421 1 34678899999999999999999999999998877653 222344455566678888899988877654
Q ss_pred h
Q 047845 976 E 976 (1801)
Q Consensus 976 e 976 (1801)
.
T Consensus 282 ~ 282 (852)
T 4fdd_A 282 T 282 (852)
T ss_dssp H
T ss_pred H
Confidence 3
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.53 E-value=0.00022 Score=94.72 Aligned_cols=484 Identities=12% Similarity=0.110 Sum_probs=250.3
Q ss_pred hHHHHHHHHHHHhcCC-ChhHHhHHHHHHHHHHhc-Cccc--cC--chhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHH
Q 047845 835 GFDKILHLLLVSLREN-SPIIRAKALRAVSIIVEV-DPEV--LC--DKRVQLAVEGRFCDS--AISVREAALELLAGILL 906 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~-s~~vRSKALK~Ls~ive~-DPsI--L~--~~~Vq~~I~~rl~Ds--S~sVRDAAldLIGkI~~ 906 (1801)
.++.++..|+..+.++ .+.+|-.|+++|..|.+. +|.+ +. .+.+...+...+.|+ ++.||.+|+..++.+..
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 5788899999999888 899999999999999873 4442 32 234555666778888 89999999999998321
Q ss_pred ----HH-----HHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC-c-chH-HHHHHhhcccCCCchhHHHHHHHHH
Q 047845 907 ----HI-----LMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF-T-EST-TACIEIISRVNDDESSIQDLVCKTF 974 (1801)
Q Consensus 907 ----~L-----~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~-~-~~~-~i~~~iL~Rv~DEEdsIkdLa~~tf 974 (1801)
++ ...+.+.|.+.+.|....||+-+++++..+....|++ . ... .+..-++..+.|.++.|+..|.+.+
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l 290 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFW 290 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 12 1336777788888999999999999999999887752 1 112 2333444566777777777766655
Q ss_pred HhhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcCCChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHH
Q 047845 975 YEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRC 1054 (1801)
Q Consensus 975 ~elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c 1054 (1801)
..+-=.... + ...... + .......+ .-+...+
T Consensus 291 ~~l~~~~~~------------------------------------~-~~~~~~---~-----~~~~~~~~---~~~~~~~ 322 (861)
T 2bpt_A 291 STICEEEID------------------------------------I-AYELAQ---F-----PQSPLQSY---NFALSSI 322 (861)
T ss_dssp HHHHHHHHH------------------------------------H-HHHHHH---C-----TTCSCCCC---CHHHHHH
T ss_pred HHHHHHHHh------------------------------------h-hhhhhh---c-----cCCchhhH---HHHHHHH
Confidence 433211000 0 000000 0 00000000 0111223
Q ss_pred HHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccc---cChH---HHHHhh
Q 047845 1055 ELMCKCLLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQ---VDNR---VVAKFL 1128 (1801)
Q Consensus 1055 ~~ivd~LVe~ll~lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~---~~~~---~~~~il 1128 (1801)
..++..|++.+-+.++.+.++..........+|..++...+.- .+..+.|++... .+.. ..+..+
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---------~~~~l~~~l~~~l~~~~~~~r~~a~~~l 393 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---------ILEPVLEFVEQNITADNWRNREAAVMAF 393 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---------GHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---------HHHHHHHHHHHHcCCCChhHHHHHHHHH
Confidence 3455555555433222111111111112334455555443321 233344444321 1111 122223
Q ss_pred cceeeeccCCC-hhHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHHhhccCCc---hhHHHHHHHHHHHhhhcCCCC
Q 047845 1129 ESVIFIIDALP-SSVIEELEQDLKHMIV---RHSFLTVVHACIKCLCSVSKISGKG---LSTVEHLILVFFKYLDSHNPD 1201 (1801)
Q Consensus 1129 ~~Vv~i~~~Lp-~~fl~eLe~dL~~lI~---k~~~~~vv~acv~CL~~l~~~~~~~---~~~v~~~i~~~~~~L~~~~~d 1201 (1801)
.. +..... +.+..-++ .+++.+. +.....+-.+++|||+.++...... ......++..+...|..
T Consensus 394 ~~---i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~---- 465 (861)
T 2bpt_A 394 GS---IMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD---- 465 (861)
T ss_dssp HH---TSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS----
T ss_pred HH---HHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc----
Confidence 22 234443 33322222 3333332 2233456678889999888765431 23445556666666532
Q ss_pred ChhhhhhHHHHHHHHHhhccccccccccCccchhhhHHHHHHHhhcCC--hHHHHHHHHHHHHHHhcCcchhchhhHHHH
Q 047845 1202 SKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRMED--FSVKVRSLQALGFVLIARPEHMLEKDIGKI 1279 (1801)
Q Consensus 1202 ~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~~d--~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i 1279 (1801)
+......+...++.+++.+......... .++...+..+...+...| ..+|..|+.+||.++...|.-+. +.+..+
T Consensus 466 ~~~v~~~a~~al~~l~~~~~~~~~~~l~--~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~-~~~~~l 542 (861)
T 2bpt_A 466 HPKVATNCSWTIINLVEQLAEATPSPIY--NFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA-ETSASI 542 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSSSSCGGG--GGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccccchhhH--HHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH-HHHHHH
Confidence 2222334455666666544310000000 133444444444444333 68999999999999988886321 111111
Q ss_pred H---HHHhcC--------------CchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccccccccCCCcch
Q 047845 1280 L---EATLAD--------------SSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNI 1342 (1801)
Q Consensus 1280 ~---~~~l~~--------------~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv 1342 (1801)
+ -..+.. +....++..+++.|..+.. +.++ .
T Consensus 543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~------------------------------~~~~-~- 590 (861)
T 2bpt_A 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIR------------------------------KSPS-S- 590 (861)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH------------------------------HCGG-G-
T ss_pred HHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHH------------------------------Hhhh-h-
Confidence 1 111110 0011122222222222211 1111 0
Q ss_pred HHHHHHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHHhc---CccCC--CcccceeeecccCcchhhHHHHHHHHHHHHhh
Q 047845 1343 CGGIIQLYWDKILGRCLDANE-EVRQTALKIVEVVLRQ---GLVHP--ITCVPYLIALETDPQEVNSKLAHHLLMNMNEK 1416 (1801)
Q Consensus 1343 ~s~ivQrYL~~IL~~~ls~~~-~vr~~Al~vl~~ilrQ---GLVhP--~~cvPtLIALeTdp~~~Ir~~A~~lL~~L~eK 1416 (1801)
+...+...++.++...-+.+. .+|..++..+..+... ++ .| ...+|.|+..-.++++.++..|..++..+.+.
T Consensus 591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~-~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF-EKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 011233444445555555555 7888888888777532 22 22 34677777777788888999999998888776
Q ss_pred Chh
Q 047845 1417 YPA 1419 (1801)
Q Consensus 1417 yes 1419 (1801)
-..
T Consensus 670 ~~~ 672 (861)
T 2bpt_A 670 LEE 672 (861)
T ss_dssp TGG
T ss_pred hch
Confidence 654
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.50 E-value=0.00019 Score=99.92 Aligned_cols=144 Identities=11% Similarity=0.129 Sum_probs=114.3
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH------
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH------ 907 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~------ 907 (1801)
..++.++..++..|.++.+.+|.-|+++|+.+++.-+. =..+.+...+...+.|+.+.||.+|...+|.|...
T Consensus 44 ~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 44 DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 34678889999999999999999999999999986543 11244666777788999999999999999995433
Q ss_pred -------HHHHHHHHHHHHhCC-CChhhhHHHHHHHHHHhhhCCC-C-cchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 908 -------ILMLYFVKVAERIKD-TGVSVRKRAIKIIRDMCTSNTN-F-TESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 908 -------L~~~yy~~I~eRi~D-~GVsVRKRvIKilkdIy~~~p~-~-~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
...+.++.+.+.+.| ....||..++.++.+++...+. + +....++..++.-+.|++..||+.|.+++..+
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 245677778888885 7789999999999999976654 2 33466778888888898889999988887765
Q ss_pred c
Q 047845 978 W 978 (1801)
Q Consensus 978 W 978 (1801)
=
T Consensus 203 ~ 203 (1230)
T 1u6g_C 203 V 203 (1230)
T ss_dssp T
T ss_pred H
Confidence 3
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.48 E-value=2e-05 Score=101.49 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=40.9
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHH
Q 047845 1236 SNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQAL 1297 (1801)
Q Consensus 1236 ~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL 1297 (1801)
..+..|...+...+..+|..+|.++++++..+|... .+.+..++.....+..+.+++-++.
T Consensus 464 ~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll~~~~~d~~d~evrdRA~ 524 (591)
T 2vgl_B 464 ELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVLSLATQDSDNPDLRDRGY 524 (591)
T ss_dssp HHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHHHHhhhcCCChHHHHHHH
Confidence 344444333344678899999999999999999754 3456677776654334566665554
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.47 E-value=0.00014 Score=96.86 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhc-------CCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH--
Q 047845 836 FDKILHLLLVSLR-------ENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILL-- 906 (1801)
Q Consensus 836 Fd~iL~~LL~~L~-------~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~-- 906 (1801)
+..++..++..|. ++...+|.-|..+|..+.+..+.-. -+.+...+...+.|.++.||++|+..+|.+..
T Consensus 319 ~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence 3556666777764 4567999999999999988766322 24556677778899999999999999998432
Q ss_pred --H----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC----cchHHHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 907 --H----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF----TESTTACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 907 --~----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~----~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
. ...+..+.|...+.|+...||.+++..+..++...+.. +....+...++..+.|. ..|+.-|..+|..
T Consensus 398 ~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~ 476 (876)
T 1qgr_A 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSS 476 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 2 34556777888889999999999999999999876531 33455667777777775 5778777777665
Q ss_pred hc
Q 047845 977 FW 978 (1801)
Q Consensus 977 lW 978 (1801)
+-
T Consensus 477 l~ 478 (876)
T 1qgr_A 477 LA 478 (876)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.46 E-value=0.00029 Score=94.30 Aligned_cols=517 Identities=13% Similarity=0.069 Sum_probs=269.6
Q ss_pred hhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCc--hhHHHHHHhhcCCCChhHHHHHHHHHHHHHH---
Q 047845 832 FSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCD--KRVQLAVEGRFCDSAISVREAALELLAGILL--- 906 (1801)
Q Consensus 832 f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~--~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~--- 906 (1801)
+...++.++..++..+.++.+.+|..|++||..+++..|..+.. +.+...+...+.|..+.||..|++.++.+..
T Consensus 209 ~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 209 LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh
Confidence 44567888999999999999999999999999999999987763 3455556678889999999999999988431
Q ss_pred --H----HHHHHHHHHHHHh-----------CC-----------CChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcc
Q 047845 907 --H----ILMLYFVKVAERI-----------KD-----------TGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISR 958 (1801)
Q Consensus 907 --~----L~~~yy~~I~eRi-----------~D-----------~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~R 958 (1801)
+ ...+..+.+...+ .| ..-.|||.+.+.+..+....++ .....+...+...
T Consensus 289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~ 367 (852)
T 4fdd_A 289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKEL 367 (852)
T ss_dssp HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 1 3445666776666 44 5668999999999999887765 3344455566667
Q ss_pred cCCCchhHHHHHHHHHHhhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHh-cCCC-hhhHHHHHHHhhhcccCcch
Q 047845 959 VNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSR-GLPN-HQLLVTVIKRNLALDFFPQS 1036 (1801)
Q Consensus 959 v~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~-~~~~-~~~lv~~~k~~l~~d~l~~~ 1036 (1801)
++|++..+|+-|..+|..+==... .........++..+- .+.+ +..+....-+.++. +...
T Consensus 368 l~~~~~~~R~aa~~alg~i~~~~~---------------~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~--l~~~ 430 (852)
T 4fdd_A 368 LFHHEWVVKESGILVLGAIAEGCM---------------QGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSR--YAHW 430 (852)
T ss_dssp HTCSSHHHHHHHHHHHHHTTTTTH---------------HHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHH--THHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhcch---------------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--HHHH
Confidence 788888999999999887642110 011112223333221 1111 11111111111110 0000
Q ss_pred hhhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccc
Q 047845 1037 AKAAGINPMSLASVRRRCELMCKCLLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLK 1116 (1801)
Q Consensus 1037 ~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~ 1116 (1801)
... .... .....+...|++.+- +. +..++. .+..+|..|+...+.-+.| |+..|.|-|.
T Consensus 431 ~~~-~~~~-------~~~~~ll~~L~~~L~---d~---~~~vr~-~a~~aL~~l~~~~~~~l~~------~l~~ll~~L~ 489 (852)
T 4fdd_A 431 VVS-QPPD-------TYLKPLMTELLKRIL---DS---NKRVQE-AACSAFATLEEEACTELVP------YLAYILDTLV 489 (852)
T ss_dssp HHH-SCTT-------TTHHHHHHHHHHHHT---CS---SHHHHH-HHHHHHHHHHHHHGGGGGG------GHHHHHHHHH
T ss_pred hcc-chHH-------HHHHHHHHHHHHHHh---CC---CHHHHH-HHHHHHHHHHHHhhHhhHh------HHHHHHHHHH
Confidence 000 0000 001234455554432 11 122222 2334666666543222222 2322222222
Q ss_pred cc---cChHHHHHhhcceeeeccCC-----ChhHHHHHHHHHHHHH--hccChHHHHHHHHHHHHHHhhccCCchh-HHH
Q 047845 1117 SQ---VDNRVVAKFLESVIFIIDAL-----PSSVIEELEQDLKHMI--VRHSFLTVVHACIKCLCSVSKISGKGLS-TVE 1185 (1801)
Q Consensus 1117 ~~---~~~~~~~~il~~Vv~i~~~L-----p~~fl~eLe~dL~~lI--~k~~~~~vv~acv~CL~~l~~~~~~~~~-~v~ 1185 (1801)
.. .+.....-++..+-.+.+.. .+.++..+-..|+... .+.+.. .+...+.|+..++..++.... .+.
T Consensus 490 ~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~-~~~~~~~~l~~i~~~~g~~~~~~~~ 568 (852)
T 4fdd_A 490 FAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCE 568 (852)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCT-THHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 11 11111111112221222211 1234444433333221 121111 223567788888776654321 222
Q ss_pred HHHHHHHHhhhc--------------CCCCChhhhhhHHHHHHHHHhhccccccccccCccchhhhHHHHHHHhhcCChH
Q 047845 1186 HLILVFFKYLDS--------------HNPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRMEDFS 1251 (1801)
Q Consensus 1186 ~~i~~~~~~L~~--------------~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~~d~~ 1251 (1801)
.++..+...+.. .....+.....++.++|.+++...... ..+..-..++.++...+......
T Consensus 569 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~----~~~~~~~~~~~~l~~~l~~~~~~ 644 (852)
T 4fdd_A 569 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI----EQLVARSNILTLMYQCMQDKMPE 644 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGG----HHHHHTCCHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhH----HHHhcCCcHHHHHHHHhCCCChh
Confidence 223322222221 111123344556777887776442111 00000024556666655556689
Q ss_pred HHHHHHHHHHHHHhcCcchhch--hhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCc
Q 047845 1252 VKVRSLQALGFVLIARPEHMLE--KDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGH 1329 (1801)
Q Consensus 1252 iR~~AL~aLG~lc~s~P~l~~~--~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k 1329 (1801)
+|..|...+|.++...|..+.. +++..++-..|..+ ....+..+...+-++...-+ .
T Consensus 645 vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~-~~~v~~~a~~alg~i~~~~~----~---------------- 703 (852)
T 4fdd_A 645 VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMG----I---------------- 703 (852)
T ss_dssp HHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTT-SHHHHHHHHHHHHHHHHHHG----G----------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHHHHHHHhh----H----------------
Confidence 9999999999999888876655 56777777777543 34444444444444321100 0
Q ss_pred cccccccCCCcchHHHHHHHHHHHHHHHHcCC--ChhHHHHHHHHHHHHHhcC--ccCC--Ccccceee-ecccCcchhh
Q 047845 1330 SVPVAAGAGDTNICGGIIQLYWDKILGRCLDA--NEEVRQTALKIVEVVLRQG--LVHP--ITCVPYLI-ALETDPQEVN 1402 (1801)
Q Consensus 1330 ~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~--~~~vr~~Al~vl~~ilrQG--LVhP--~~cvPtLI-ALeTdp~~~I 1402 (1801)
.+ . ..+..+++.. +++.-++ ...++..|...|+-+.+.| .|.| .+.+|.+. +|-.-.+..-
T Consensus 704 ~~------~--p~~~~il~~L----~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e 771 (852)
T 4fdd_A 704 EM------Q--PYIPMVLHQL----VEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEE 771 (852)
T ss_dssp GG------G--GGTHHHHHHH----HHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHH
T ss_pred hH------H--HHHHHHHHHH----HHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHH
Confidence 00 0 1223344444 4433343 3467777777777665543 2334 23343332 3432233345
Q ss_pred HHHHHHHHHHHHhhChhhhhhhh
Q 047845 1403 SKLAHHLLMNMNEKYPAFFESRL 1425 (1801)
Q Consensus 1403 r~~A~~lL~~L~eKyes~v~~~~ 1425 (1801)
+..|+..+-.+-..+|..+...+
T Consensus 772 ~~~a~~~l~~li~~~p~~~~~~~ 794 (852)
T 4fdd_A 772 KDSAFRGICTMISVNPSGVIQDF 794 (852)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHhChHhHHHHH
Confidence 77888888888888888554443
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.45 E-value=0.00027 Score=94.02 Aligned_cols=375 Identities=12% Similarity=0.108 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHHHhcCC--ChhHHhHHHHHHHHHHhc-CccccC--chhHHHHHHhhcCCC--ChhHHHHHHHHHHHHHH
Q 047845 834 RGFDKILHLLLVSLREN--SPIIRAKALRAVSIIVEV-DPEVLC--DKRVQLAVEGRFCDS--AISVREAALELLAGILL 906 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~--s~~vRSKALK~Ls~ive~-DPsIL~--~~~Vq~~I~~rl~Ds--S~sVRDAAldLIGkI~~ 906 (1801)
..|+.++..++..+.++ .+.+|-.|+++|..+++. +|..+. .+.+...+...+.|. ++.||.+|+..++.+..
T Consensus 124 ~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 124 NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 55777888888888888 899999999999999874 455444 244556666778877 79999999999998332
Q ss_pred H----HH-----HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC--cchH-HHHHHhhcccCCCchhHHHHHHHHH
Q 047845 907 H----IL-----MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF--TEST-TACIEIISRVNDDESSIQDLVCKTF 974 (1801)
Q Consensus 907 ~----L~-----~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~--~~~~-~i~~~iL~Rv~DEEdsIkdLa~~tf 974 (1801)
. +. ..+.+.|.+.+.|....||+.+++++..+....+.+ +... .+..-++....|+++.|+..|.+.+
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l 283 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1 11 235777788888888999999999999999887753 1111 2333444556777778887776655
Q ss_pred HhhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcCCChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHH
Q 047845 975 YEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRC 1054 (1801)
Q Consensus 975 ~elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c 1054 (1801)
..+-=.. ..+. .. . ...... + + -+ .. .....+...+
T Consensus 284 ~~l~~~~-----------------------~~~~--~~----~---~~~~~~--~-~-~~-------~~-~~~~~~~~~~ 319 (876)
T 1qgr_A 284 SNVCDEE-----------------------MDLA--IE----A---SEAAEQ--G-R-PP-------EH-TSKFYAKGAL 319 (876)
T ss_dssp HHHHHHH-----------------------HHHH--HH----H---HHHHHH--S-S-CC-------SS-CCCCHHHHHH
T ss_pred HHHHHHH-----------------------HhHh--hh----h---cccccc--C-C-Cc-------cc-hhHHHHHHHH
Confidence 4331100 0000 00 0 000000 0 0 00 00 0001112233
Q ss_pred HHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccc---cChHH---HHHhh
Q 047845 1055 ELMCKCLLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQ---VDNRV---VAKFL 1128 (1801)
Q Consensus 1055 ~~ivd~LVe~ll~lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~---~~~~~---~~~il 1128 (1801)
..++..|++.+...++..+++.......+..+|..++...+.- .+..+.|++... .+... .+..+
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~l~~l~~~l~~~~~~~r~~a~~~l 390 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---------IVPHVLPFIKEHIKNPDWRYRDAAVMAF 390 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---------GHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---------hHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 4566666665543332111111111223444555555544321 233444444321 11111 12222
Q ss_pred cceeeeccCCC-hhH---HHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccCC---chhHHHHHHHHHHHhhhcCCCC
Q 047845 1129 ESVIFIIDALP-SSV---IEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGK---GLSTVEHLILVFFKYLDSHNPD 1201 (1801)
Q Consensus 1129 ~~Vv~i~~~Lp-~~f---l~eLe~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~---~~~~v~~~i~~~~~~L~~~~~d 1201 (1801)
.. +...++ +.+ +.++-..|...+. .+...|-.+|+|||..++..... ....+..++..+...|..
T Consensus 391 ~~---i~~~~~~~~~~~~~~~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~---- 462 (876)
T 1qgr_A 391 GC---ILEGPEPSQLKPLVIQAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA---- 462 (876)
T ss_dssp HH---TSSSSCHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS----
T ss_pred HH---HHcCCCHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC----
Confidence 22 234444 322 2233233333332 23345667889999999876543 223445556666555543
Q ss_pred ChhhhhhHHHHHHHHHhhccccc----c----ccccCccchhhhHHHHHHHhhcC---ChHHHHHHHHHHHHHHhcCcc
Q 047845 1202 SKQVVGRSLFCLGLLIRYGSSLL----T----TSYEKNIDIVSNLNLFKRYLRME---DFSVKVRSLQALGFVLIARPE 1269 (1801)
Q Consensus 1202 ~~~~l~R~L~~lGll~Ry~~~~~----~----~~~~k~~~v~~~l~lf~~~~~~~---d~~iR~~AL~aLG~lc~s~P~ 1269 (1801)
+......++.+++.++..+.... . ....-..++...+..+...+... +..+|..++++||.++..-+.
T Consensus 463 ~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 463 EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence 22233455667777766443100 0 00001124455666665554332 357898999999999877664
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.44 E-value=1.5e-05 Score=100.86 Aligned_cols=445 Identities=14% Similarity=0.111 Sum_probs=239.8
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhc-CccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----HHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEV-DPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-----ILMLYF 913 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~-DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-----L~~~yy 913 (1801)
+..++..|.++.+.+|..|+++|+.+... .|. -..+.+...+.... |.++.||.+|.+.+|++..+ ......
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll 89 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLL 89 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 56788899999999999999999998753 221 01123444444444 88999999999999983321 334456
Q ss_pred HHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhccc-CCCchhHHHHHHHHHHhhccCCCCCCcccccCC
Q 047845 914 VKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRV-NDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGD 992 (1801)
Q Consensus 914 ~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv-~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d 992 (1801)
+.|..-..|....||+.++..+..++...|. +........++.+. +++...+|..|..++..++-.- +
T Consensus 90 ~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~-~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~--~-------- 158 (588)
T 1b3u_A 90 PPLESLATVEETVVRDKAVESLRAISHEHSP-SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV--S-------- 158 (588)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH-HHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS--C--------
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc--C--------
Confidence 6666666788899999999999999877664 11111122222222 3445566666666665543110 0
Q ss_pred CCCchHHHHHHHHHHHHHHhcCCChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 047845 993 GSSVPLEVAKKTEQIVEMSRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQVEEMN 1072 (1801)
Q Consensus 993 ~ss~~~~~~~k~~~iv~vl~~~~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~lee~~ 1072 (1801)
.. ....++. ++...+. | .+ ..++..+
T Consensus 159 -----~~---~~~~l~~-------------~l~~l~~-d----------~~----~~VR~~a------------------ 184 (588)
T 1b3u_A 159 -----SA---VKAELRQ-------------YFRNLCS-D----------DT----PMVRRAA------------------ 184 (588)
T ss_dssp -----HH---HHHHHHH-------------HHHHHHT-C----------SC----HHHHHHH------------------
T ss_pred -----HH---HHHHHHH-------------HHHHHhC-C----------CC----HHHHHHH------------------
Confidence 00 0001111 1111000 0 00 1122111
Q ss_pred cccccccchhHHHHHHhhhccccCccCCCCCccchhhhhcccccccc--ChHH----HHHhhcceeeeccCCCh-hHHHH
Q 047845 1073 NEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQV--DNRV----VAKFLESVIFIIDALPS-SVIEE 1145 (1801)
Q Consensus 1073 ~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~--~~~~----~~~il~~Vv~i~~~Lp~-~fl~e 1145 (1801)
+.+|..|++.-+. ..+...+.|+|.... +... .+..+.. +...+++ .+...
T Consensus 185 -----------~~~l~~l~~~~~~--------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~---l~~~~~~~~~~~~ 242 (588)
T 1b3u_A 185 -----------ASKLGEFAKVLEL--------DNVKSEIIPMFSNLASDEQDSVRLLAVEACVN---IAQLLPQEDLEAL 242 (588)
T ss_dssp -----------HHHHHHHHHTSCH--------HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHH---HHHHSCHHHHHHH
T ss_pred -----------HHHHHHHHHHhcH--------HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH---HHHhCCHHHHHHH
Confidence 1222222221110 011122333332111 0111 1111111 1122332 22222
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCCCChhhhh-hHHHHHHHHHhhccccc
Q 047845 1146 LEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVG-RSLFCLGLLIRYGSSLL 1224 (1801)
Q Consensus 1146 Le~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~d~~~~l~-R~L~~lGll~Ry~~~~~ 1224 (1801)
+-..+..++. .....+-.+++.||+.+....+... ....++..+...+. |..+.++ .+...+|.++..+....
T Consensus 243 ~~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 243 VMPTLRQAAE-DKSWRVRYMVADKFTELQKAVGPEI-TKTDLVPAFQNLMK----DCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp THHHHHHHHT-CSSHHHHHHHHHTHHHHHHHHCHHH-HHHTHHHHHHHHHT----CSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHcc-CCCHHHHHHHHHHHHHHHHHhCccc-chhHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2222223332 2233566778888888876554321 12334445555443 2222232 23455666654332100
Q ss_pred cccccCccchhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 047845 1225 TTSYEKNIDIVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYL 1304 (1801)
Q Consensus 1225 ~~~~~k~~~v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL 1304 (1801)
.....+...++.+...+...+..+|..|..+||.++...+.-...+.+..+|...+.++ +..++..+++.+-.+.
T Consensus 317 ----~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~-~~~Vr~~a~~~l~~l~ 391 (588)
T 1b3u_A 317 ----RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDE-CPEVRLNIISNLDCVN 391 (588)
T ss_dssp ----HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCS-CHHHHHHHHTTCHHHH
T ss_pred ----hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHH
Confidence 00012344556666666667789999999999999866554333445666666666543 3444444443333322
Q ss_pred HHHhhhcccccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhc---Cc
Q 047845 1305 LDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQ---GL 1381 (1801)
Q Consensus 1305 ~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQ---GL 1381 (1801)
.. .+. ....+.+++.+...+-+.+..+|..++..+..+.++ ..
T Consensus 392 ~~------------------------------~~~----~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 437 (588)
T 1b3u_A 392 EV------------------------------IGI----RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF 437 (588)
T ss_dssp HH------------------------------SCH----HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG
T ss_pred Hh------------------------------cCH----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH
Confidence 10 000 124577888888888888999999999999988653 22
Q ss_pred cCCCcccceeeecccCcchhhHHHHHHHHHHHHhhChh
Q 047845 1382 VHPITCVPYLIALETDPQEVNSKLAHHLLMNMNEKYPA 1419 (1801)
Q Consensus 1382 VhP~~cvPtLIALeTdp~~~Ir~~A~~lL~~L~eKyes 1419 (1801)
. +...+|.++.+..|+++.+|..|...+..+.+.++.
T Consensus 438 ~-~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 438 F-DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp C-CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred H-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 2 235778899999999999999999999888776543
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.34 E-value=0.00031 Score=97.91 Aligned_cols=142 Identities=11% Similarity=0.182 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhc-CCChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH----
Q 047845 835 GFDKILHLLLVSLR-ENSPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAGILLH---- 907 (1801)
Q Consensus 835 sFd~iL~~LL~~L~-~~s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---- 907 (1801)
.++.++..|+..+. ++.+.+|..|+.+|+.+++.-+..+. .+.+...+...+.|+.+.||++|+..+|.+...
T Consensus 130 ~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~ 209 (1230)
T 1u6g_C 130 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209 (1230)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH
Confidence 34566777777777 46778888888888888876555443 355666666777788888888888888883321
Q ss_pred HHHHHHHHHHHHhCC-CChhhhHHHHHHHHHHhhhCCC-C-cchHHHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 908 ILMLYFVKVAERIKD-TGVSVRKRAIKIIRDMCTSNTN-F-TESTTACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D-~GVsVRKRvIKilkdIy~~~p~-~-~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
+.....+.+.+.+.+ .+..+|+.++..+..|+...+. + +....+...++.-++|+++.||+.|.++|..
T Consensus 210 ~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~ 281 (1230)
T 1u6g_C 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 281 (1230)
T ss_dssp -CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 111223333333322 2246888888888888766543 1 1123334444455567777788877777654
No 12
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.28 E-value=0.00023 Score=92.29 Aligned_cols=102 Identities=12% Similarity=0.240 Sum_probs=85.9
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---HHHHHHHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH---ILMLYFVK 915 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---L~~~yy~~ 915 (1801)
..+.+.+-|.++.+.+|.-|+++|+.|. +|.+. +.+...|.+++.|++|.||.+|+--++++... +...+++.
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~--~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~ 183 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC--RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPA 183 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGG
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 3477788888999999999999999996 45543 45677888899999999999999999994432 66789999
Q ss_pred HHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 916 VAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 916 I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
|.+.+.|.-.+|+=-++..+.+|+...|+
T Consensus 184 l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 184 TKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp TTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred HHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 99999999999999999999999876654
No 13
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.28 E-value=0.00032 Score=90.93 Aligned_cols=130 Identities=10% Similarity=0.025 Sum_probs=102.4
Q ss_pred HHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCC
Q 047845 845 VSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-ILMLYFVKVAERIKDT 923 (1801)
Q Consensus 845 ~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-L~~~yy~~I~eRi~D~ 923 (1801)
+.+.++...+|--+-=.+..+.+.+|.++- .+-..+.+-+.|+.+.||-.|+..+|+|... +.+...+.|...+.|.
T Consensus 77 k~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~--l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~ 154 (618)
T 1w63_A 77 KLIASQKFTDKRIGYLGAMLLLDERQDVHL--LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTS 154 (618)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHcCCchHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 444566666665555577777777775432 2445666678899999999999999995444 7888899999999999
Q ss_pred ChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 924 GVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 924 GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
...|||.|+..+-.+|...|+. .......+...+.|.+.+|+-.|...|.++.
T Consensus 155 ~~~VRk~A~~al~~l~~~~p~~--v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRKVPEL--MEMFLPATKNLLNEKNHGVLHTSVVLLTEMC 207 (618)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG--GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHChHH--HHHHHHHHHHHhCCCCHhHHHHHHHHHHHHH
Confidence 9999999999999999988872 2244556677788999899999999999875
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.23 E-value=0.0034 Score=83.32 Aligned_cols=140 Identities=8% Similarity=0.008 Sum_probs=102.3
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCc--h-hHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-------
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCD--K-RVQLAVEGRFCDSAISVREAALELLAGILLH------- 907 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~--~-~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~------- 907 (1801)
.++..|...+.++...+|..|++||..+++..|..+.. . .+-..+...+.|....||..|++.++.+...
T Consensus 224 ~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 303 (861)
T 2bpt_A 224 YLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE 303 (861)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 35666667777888999999999999999998877652 2 4445556688899999999999999984322
Q ss_pred -------------HH----HHHHHHHHHHhCC-------CChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCc
Q 047845 908 -------------IL----MLYFVKVAERIKD-------TGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDE 963 (1801)
Q Consensus 908 -------------L~----~~yy~~I~eRi~D-------~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEE 963 (1801)
+. ....+.+...+.+ ....||+.+.+.+..+....++ .....+...+...++|.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~ 382 (861)
T 2bpt_A 304 LAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADN 382 (861)
T ss_dssp HHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSS
T ss_pred hhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCC
Confidence 11 2344455555553 4568999999999999887664 233444555556667888
Q ss_pred hhHHHHHHHHHHhhc
Q 047845 964 SSIQDLVCKTFYEFW 978 (1801)
Q Consensus 964 dsIkdLa~~tf~elW 978 (1801)
-.+|+.|...|..+=
T Consensus 383 ~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 383 WRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHH
Confidence 889999998887653
No 15
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.84 E-value=0.0055 Score=79.42 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhc--CCCChhHHHHHHHHHHHHHHH---HHH--H
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRF--CDSAISVREAALELLAGILLH---ILM--L 911 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl--~DsS~sVRDAAldLIGkI~~~---L~~--~ 911 (1801)
..|.|.+-|.++.+.+|+-||++|+.|. +|.+. +.+...|.+++ .|++|-||..|+--+.|+... +.. .
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~--~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~ 187 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVG--SREMA--EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGD 187 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHH--HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchh
Confidence 3577788888999999999999999994 45544 34666777788 899999999999999984322 555 7
Q ss_pred HHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 912 YFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 912 yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
+.+.|.+.+.|...+|+=-++.++.+|+...|+
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 899999999999999999999999999987764
No 16
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.73 E-value=0.002 Score=83.53 Aligned_cols=136 Identities=12% Similarity=0.123 Sum_probs=105.8
Q ss_pred HHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q 047845 842 LLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL-LHILMLYFVKVAERI 920 (1801)
Q Consensus 842 ~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~-~~L~~~yy~~I~eRi 920 (1801)
.++..+.++...+|--+-=++..+.+.+|.++ --+-.++.+=+.|+.+.||-.|+--+|+|. +.+.+...+.|...+
T Consensus 78 ~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l 155 (621)
T 2vgl_A 78 EAVNLLSSNRYTEKQIGYLFISVLVNSNSELI--RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKIL 155 (621)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 44556777888888778888888888888654 224566677788999999999999999954 448899999999999
Q ss_pred --CCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 921 --KDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 921 --~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
.|...-|||+|+=.+-.+|...|+.-.......++..-+.|.+.+|+--|...|.++.-
T Consensus 156 ~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 156 VAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999888732211233344444478888999999888888753
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.70 E-value=0.0027 Score=80.08 Aligned_cols=141 Identities=13% Similarity=0.096 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcC--ccc--cCchhHHHHHHhhcCCC-ChhHHHHHHHHHHHHHH---H----
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVD--PEV--LCDKRVQLAVEGRFCDS-AISVREAALELLAGILL---H---- 907 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~D--PsI--L~~~~Vq~~I~~rl~Ds-S~sVRDAAldLIGkI~~---~---- 907 (1801)
+..++..|.++.+.+|-.|+.+|..++..+ |.+ +....+...+...+.++ ++.||..|+..++.+.. .
T Consensus 89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 168 (530)
T 1wa5_B 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 168 (530)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 556667778888999999999999998763 422 11222334444567776 89999999999999543 1
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH---HHHHHhhcccCCCchhHHHHHHHHHHhhccC
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST---TACIEIISRVNDDESSIQDLVCKTFYEFWFE 980 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~---~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~ 980 (1801)
......+.++..+.+....||..++..|..|+...+.+.... .+...++.-+.|.+..|+..|..+|..+.-.
T Consensus 169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 223456778888888899999999999999986544322111 1123344444556667777777777776643
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.65 E-value=0.0053 Score=81.69 Aligned_cols=141 Identities=9% Similarity=0.086 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc---cccCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH------
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDP---EVLCDKRVQLAVEGRFC-DSAISVREAALELLAGILLH------ 907 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP---sIL~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~------ 907 (1801)
..+..|+..|.+..+.+|-+|+++|..|...++ .+...+.+...+.+.|. +.++.||..|+..+.++...
T Consensus 150 g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~ 229 (780)
T 2z6g_A 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA 229 (780)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 345556666667889999999999999987543 22334445555555665 44899999999999984321
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH---HHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST---TACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~---~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
......+.|++.+.+....||+.++..|..|+..+++..... .+...++.-+.+.+..++..|..++. .|-
T Consensus 230 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~-~La 304 (780)
T 2z6g_A 230 IFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ-ILA 304 (780)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHH-HHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH-HHh
Confidence 223467888999999999999999999999998876632222 11234555555666678888887777 443
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.61 E-value=0.00082 Score=82.09 Aligned_cols=141 Identities=9% Similarity=0.039 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHh--cCccc---cCchhHHHHHHhhcCCC-ChhHHHHHHHHHHHHHH---H---
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVE--VDPEV---LCDKRVQLAVEGRFCDS-AISVREAALELLAGILL---H--- 907 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive--~DPsI---L~~~~Vq~~I~~rl~Ds-S~sVRDAAldLIGkI~~---~--- 907 (1801)
+..++..|.++.+.+|..|+++|..++. .+|.+ +..+.+...+...+.+. .+.||..|+..++.+.. .
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5566777778889999999999999875 45432 23324444455577777 89999999999999543 1
Q ss_pred --HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH---HHHHHhhcccC-CCchhHHHHHHHHHHhhccC
Q 047845 908 --ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST---TACIEIISRVN-DDESSIQDLVCKTFYEFWFE 980 (1801)
Q Consensus 908 --L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~---~i~~~iL~Rv~-DEEdsIkdLa~~tf~elWF~ 980 (1801)
......+.+...+.+....||..++..|..+....++..... .+...++.-+. |.+..|+..|..+|..+-..
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 234588899999999999999999999999986554321111 11233444445 46778999999999888754
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.55 E-value=0.0015 Score=82.41 Aligned_cols=141 Identities=10% Similarity=0.083 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCc--cc--cCchhHHHHHHhhcCCCC-hhHHHHHHHHHHHHHHH-------
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDP--EV--LCDKRVQLAVEGRFCDSA-ISVREAALELLAGILLH------- 907 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DP--sI--L~~~~Vq~~I~~rl~DsS-~sVRDAAldLIGkI~~~------- 907 (1801)
+..|+..|.++.+.+|-.|+++|..++..++ .+ +....+-..+...+.++. +.||..|+..++.+...
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566677788889999999999999988764 11 111222333334666665 99999999999995431
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH-H--HHHHhhccc-CCCchhHHHHHHHHHHhhccC
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST-T--ACIEIISRV-NDDESSIQDLVCKTFYEFWFE 980 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~-~--i~~~iL~Rv-~DEEdsIkdLa~~tf~elWF~ 980 (1801)
+.....+.++.-+.+....||..++..|..|+...+.+.... . +...++.-+ .+.+..++..|..+|..+-..
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 223478889999999999999999999999986654422111 1 123455555 556678888888888877654
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.54 E-value=0.001 Score=81.26 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHhcCC--ChhHHhHHHHHHHHHHhc-CccccCc--hhHHHHHHhhcCCC--ChhHHHHHHHHHHHHH--
Q 047845 835 GFDKILHLLLVSLREN--SPIIRAKALRAVSIIVEV-DPEVLCD--KRVQLAVEGRFCDS--AISVREAALELLAGIL-- 905 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~--s~~vRSKALK~Ls~ive~-DPsIL~~--~~Vq~~I~~rl~Ds--S~sVRDAAldLIGkI~-- 905 (1801)
.++.++..|+..+.++ .+.+|--|+.+|+.+.+. .|.++.. +.+...+...+.|. ++.||.+|+..++.+.
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677888888888888 899999999999999984 3666552 45667777888898 8999999999999832
Q ss_pred -H-HH----HHHH-HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC--cchH-HHHHHhhcccCCCchhHHHHHHHHH
Q 047845 906 -L-HI----LMLY-FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF--TEST-TACIEIISRVNDDESSIQDLVCKTF 974 (1801)
Q Consensus 906 -~-~L----~~~y-y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~--~~~~-~i~~~iL~Rv~DEEdsIkdLa~~tf 974 (1801)
. .. ...| .+.+.+.+.|....||+.+++++..++...+++ +... .+..-++..+.|+++.|+..|.+.+
T Consensus 205 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l 283 (462)
T 1ibr_B 205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW 283 (462)
T ss_dssp THHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 1 11 2234 677777888999999999999999999887652 2222 3444455556788888887766644
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=97.52 E-value=0.015 Score=72.60 Aligned_cols=138 Identities=9% Similarity=0.082 Sum_probs=93.5
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc---ccCchhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHH-------
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE---VLCDKRVQLAVEGRFCD-SAISVREAALELLAGILLH------- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs---IL~~~~Vq~~I~~rl~D-sS~sVRDAAldLIGkI~~~------- 907 (1801)
.+..|+..|.++.+.+|.+|+++|..+...++. ++..+.+-..+.+.+.+ +++.||..|+..++++...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 355666677788999999999999999876653 33444444444456653 4789999999999994321
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH---HHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST---TACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~---~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
......+.+.+.+.+....||+.++..|..++...++..... .+...++.-+.++...++..+..+|..
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 233477888899999999999999999999998765522111 112334444455555566655555553
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.41 E-value=0.001 Score=75.31 Aligned_cols=145 Identities=11% Similarity=0.135 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHhc-CCChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-HHH
Q 047845 835 GFDKILHLLLVSLR-ENSPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAGILLH-ILM 910 (1801)
Q Consensus 835 sFd~iL~~LL~~L~-~~s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-L~~ 910 (1801)
.|..++..|...|. +..+.||..|++||+.++..=..-+. .+.+-..|..++.|.++.||++|...+..+... -..
T Consensus 53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~ 132 (242)
T 2qk2_A 53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132 (242)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 45677888888885 88999999999999999854222222 234667888899999999999999999995443 236
Q ss_pred HHHHHHHHHhCCCChhhhHHHHHHHHHHhhhC-CC--C-cchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 911 LYFVKVAERIKDTGVSVRKRAIKIIRDMCTSN-TN--F-TESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 911 ~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~-p~--~-~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
.+.+.|...+.|....||.-++.++..+.... |+ + .....++..++.-++|....||+-|.+++..+.-
T Consensus 133 ~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999987664 33 1 2234556667777799999999999999988763
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.35 E-value=0.0086 Score=75.51 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCC-ChhHHhHHHHHHHHHHhcCcccc---CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH---H----
Q 047845 839 ILHLLLVSLREN-SPIIRAKALRAVSIIVEVDPEVL---CDKRVQLAVEGRFCDSAISVREAALELLAGILL---H---- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~-s~~vRSKALK~Ls~ive~DPsIL---~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~---~---- 907 (1801)
++..|+..|.++ .+.+|..|+.+|+.+...++..- ....+-..+...+.++++.||+.|+..+|.+.. .
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 210 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY 210 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence 466777888876 89999999999999998665321 112223344446678899999999999999532 1
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhC-CCCcch--HHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSN-TNFTES--TTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~-p~~~~~--~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
+.....+.|..-+.|....||+.++..|..++... |..... ..+...|+.-+.++++.|+.-|..+|..+-
T Consensus 211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 23357888999999999999999999999999665 432211 112334555556777778877777777665
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.29 E-value=0.015 Score=71.04 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCC--ChhHHhHHHHHHHHHHhcCc-----------cccCc---hhHHHHHHhhcCCCChhHHHHHHH
Q 047845 836 FDKILHLLLVSLREN--SPIIRAKALRAVSIIVEVDP-----------EVLCD---KRVQLAVEGRFCDSAISVREAALE 899 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~--s~~vRSKALK~Ls~ive~DP-----------sIL~~---~~Vq~~I~~rl~DsS~sVRDAAld 899 (1801)
.+.++..++..+.++ .+.+|.-|.-.|..++.... .-+.. ..|+..+...+.+.++.| ..+-.
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~ 111 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHH
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHH
Confidence 344555555555543 67999999999999886541 22332 336776777888999999 88888
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHhCCC--ChhhhHHHHHHHHHHhhhC-CCC--cchHHHHHHhhcccCCC--chhHH
Q 047845 900 LLAGILLH-----ILMLYFVKVAERIKDT--GVSVRKRAIKIIRDMCTSN-TNF--TESTTACIEIISRVNDD--ESSIQ 967 (1801)
Q Consensus 900 LIGkI~~~-----L~~~yy~~I~eRi~D~--GVsVRKRvIKilkdIy~~~-p~~--~~~~~i~~~iL~Rv~DE--EdsIk 967 (1801)
.||.|... --..+.+.|.+.+.|. ...||.-++.++..++... +++ +....+...++.-+.|+ ...||
T Consensus 112 ~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 191 (462)
T 1ibr_B 112 CVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 191 (462)
T ss_dssp HHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHH
Confidence 88885544 1235778888888888 8899999999999999865 321 22344555666667787 46899
Q ss_pred HHHHHHHHhh
Q 047845 968 DLVCKTFYEF 977 (1801)
Q Consensus 968 dLa~~tf~el 977 (1801)
..|.+++..+
T Consensus 192 ~~a~~~l~~~ 201 (462)
T 1ibr_B 192 LAATNALLNS 201 (462)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888774
No 26
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.25 E-value=0.0041 Score=70.34 Aligned_cols=133 Identities=14% Similarity=0.106 Sum_probs=108.1
Q ss_pred HHHHhcCCChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH-------HHHHH
Q 047845 843 LLVSLRENSPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFC-DSAISVREAALELLAGILLH-------ILMLY 912 (1801)
Q Consensus 843 LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~-------L~~~y 912 (1801)
++..+.+...+.|-.|+.+|..+++..|.+.. -..+-..+..++. |+.+.||.+|+..+|.+... ....+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~i 99 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASAC 99 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55567788999999999999999998666654 3467778888995 99999999999999994322 66789
Q ss_pred HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 913 FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 913 y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
.+.|.+++.|+...||..+...+..++...+ ...++..++..+.|....||.-+...+..+.-
T Consensus 100 lp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 100 VPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986542 44566777777888777788888777776543
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.22 E-value=0.24 Score=64.14 Aligned_cols=140 Identities=9% Similarity=0.091 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc---ccCchhHHHHHHhhcCC-CChhHHHHHHHHHHHHHHH-------H
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPE---VLCDKRVQLAVEGRFCD-SAISVREAALELLAGILLH-------I 908 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs---IL~~~~Vq~~I~~rl~D-sS~sVRDAAldLIGkI~~~-------L 908 (1801)
+..|+..|.++.+.+|.+|+++|..+...++. +...+.+-..+.+.|.+ .++.||.+|+..+..+... .
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 44556666778899999999999999987763 33344444555556665 4899999999998873321 2
Q ss_pred HHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH---HHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 909 LMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST---TACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 909 ~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~---~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
.....+.|.+.+.+....||+.++..|..++...+...... .+...++.-+.++...++..+..+|..+=.
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 22467888888999999999999999999998765422111 122445555556555677777777766543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.10 E-value=0.027 Score=70.80 Aligned_cols=385 Identities=11% Similarity=0.070 Sum_probs=204.1
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCC-hhhhHHHHHHHHHHhhhCCCCcc
Q 047845 878 VQLAVEGRFCDSAISVREAALELLAGILLH---------ILMLYFVKVAERIKDTG-VSVRKRAIKIIRDMCTSNTNFTE 947 (1801)
Q Consensus 878 Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---------L~~~yy~~I~eRi~D~G-VsVRKRvIKilkdIy~~~p~~~~ 947 (1801)
+...|. .+.++.+.+|..|+..++++++. ......+.+++.+.+.. ..||..++..|..|+..+++...
T Consensus 76 l~~lv~-~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIG-GVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHH-HHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHH-HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 343333 55667789999999999985321 33356788888888876 89999999999999976554222
Q ss_pred hHH---HHHHhhcccCCCchhHHHHHHHHHHhhccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcCCChhhHHHHH
Q 047845 948 STT---ACIEIISRVNDDESSIQDLVCKTFYEFWFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLPNHQLLVTVI 1024 (1801)
Q Consensus 948 ~~~---i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~~~~~~lv~~~ 1024 (1801)
... +...++.-+.++++.|+..|..+|..+-..... . ...++ . .
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~----------------~---~~~i~---~-~---------- 201 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK----------------C---RDLVL---A-N---------- 201 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH----------------H---HHHHH---H-T----------
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh----------------h---HHHHH---H-C----------
Confidence 111 223455555666677888777777766432100 0 00000 0 0
Q ss_pred HHhhhcccCcchhhhhCCCcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhccccCccCCCCCc
Q 047845 1025 KRNLALDFFPQSAKAAGINPMSLASVRRRCELMCKCLLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDP 1104 (1801)
Q Consensus 1025 k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~ivd~LVe~ll~lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~ 1104 (1801)
.++..|+..+- .. .+...+ ..++.+|.-+|...|..
T Consensus 202 -------------------------------g~l~~Ll~lL~---~~--~~~~v~-~~a~~~L~~L~~~~~~~------- 237 (528)
T 4b8j_A 202 -------------------------------GALLPLLAQLN---EH--TKLSML-RNATWTLSNFCRGKPQP------- 237 (528)
T ss_dssp -------------------------------TCHHHHHHTCC---TT--CCHHHH-HHHHHHHHHHHCSSSCC-------
T ss_pred -------------------------------CcHHHHHHHHh---cC--CCHHHH-HHHHHHHHHHHcCCCCC-------
Confidence 01111221110 00 000111 11223454555433210
Q ss_pred cchhhhhccccccccChHHHHHhhcceeeeccCCChhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhccCCchhHH
Q 047845 1105 SQFVITLQPYLKSQVDNRVVAKFLESVIFIIDALPSSVIEELEQDLKHMIVRHSFLTVVHACIKCLCSVSKISGKGLSTV 1184 (1801)
Q Consensus 1105 ~~~i~~L~PYL~~~~~~~~~~~il~~Vv~i~~~Lp~~fl~eLe~dL~~lI~k~~~~~vv~acv~CL~~l~~~~~~~~~~v 1184 (1801)
. .... ..+-..|..++ +.+...+...|+|||+.++.........+
T Consensus 238 -~-~~~~--------------------------------~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 282 (528)
T 4b8j_A 238 -S-FEQT--------------------------------RPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (528)
T ss_dssp -C-HHHH--------------------------------TTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred -c-HHHH--------------------------------HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 0 0000 00011122333 23334677788888888864322111111
Q ss_pred H--HHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhccccccccccCccchhhhHHHHHHHhhcC-ChHHHHHHHHHHH
Q 047845 1185 E--HLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLNLFKRYLRME-DFSVKVRSLQALG 1261 (1801)
Q Consensus 1185 ~--~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~lf~~~~~~~-d~~iR~~AL~aLG 1261 (1801)
. .++..+...|... +......++.++|.++...+..... +--...+..+...+... +..+|..|..+|+
T Consensus 283 ~~~g~v~~Lv~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~-----~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 283 IEAGVCPRLVELLLHP---SPSVLIPALRTVGNIVTGDDAQTQC-----IIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp HHTTCHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHHHH-----HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHcCC---ChhHHHHHHHHHHHHHcCCHHHHHH-----HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 1 1233444444332 2333445666777666432211000 00012344555555566 8899999999999
Q ss_pred HHHhcCcch---hchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCCccccccccCC
Q 047845 1262 FVLIARPEH---MLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDGHSVPVAAGAG 1338 (1801)
Q Consensus 1262 ~lc~s~P~l---~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~k~~~v~~g~~ 1338 (1801)
.++...+.. +....+.+.+-..|.++ +..++..++..|..+....
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~------------------------------- 402 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGG------------------------------- 402 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHS-------------------------------
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCC-------------------------------
Confidence 999866542 22223344444445443 3445545444444432210
Q ss_pred CcchHHHHH-HHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC----------------ccCCCcccceeeecccCcchh
Q 047845 1339 DTNICGGII-QLYWDKILGRCLDANEEVRQTALKIVEVVLRQG----------------LVHPITCVPYLIALETDPQEV 1401 (1801)
Q Consensus 1339 Dsgv~s~iv-QrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQG----------------LVhP~~cvPtLIALeTdp~~~ 1401 (1801)
+...+..++ +..++.++.+..+.+..++..|+..|..+++.| ++....++..|..|..++++.
T Consensus 403 ~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~ 482 (528)
T 4b8j_A 403 SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNE 482 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHH
Confidence 000011111 124566677777889999999999999998765 122234567788999999999
Q ss_pred hHHHHHHHHHHHHh
Q 047845 1402 NSKLAHHLLMNMNE 1415 (1801)
Q Consensus 1402 Ir~~A~~lL~~L~e 1415 (1801)
|++.|..++..++.
T Consensus 483 v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 483 IYEKAVKILEAYWM 496 (528)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCC
Confidence 99999998876554
No 29
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.03 E-value=0.0034 Score=68.48 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAE 918 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~e 918 (1801)
.+..|+..|.++.+.+|..|+++|+.+- .+.....+...+.|+++.||.+|+..+|++... ...+.|.+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~~ 145 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---RAVEPLIK 145 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG---GGHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH---HHHHHHHH
Confidence 3456667788899999999999999873 234445566688899999999999999985432 34566788
Q ss_pred HhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 919 RIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 919 Ri~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
.+.|+...||..++..|..+- + ..+...+...++|++..|+..|.+.|.++
T Consensus 146 ~l~d~~~~vr~~A~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 146 ALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 888999999999999999882 1 22333444455788889999999988764
No 30
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0075 Score=69.18 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=113.1
Q ss_pred hhhHHHHHHHHHHHh-cCCChhHHhHHHHHHHHHHhcC--cccc-C-chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 047845 833 SRGFDKILHLLLVSL-RENSPIIRAKALRAVSIIVEVD--PEVL-C-DKRVQLAVEGRFCDSAISVREAALELLAGILLH 907 (1801)
Q Consensus 833 ~~sFd~iL~~LL~~L-~~~s~~vRSKALK~Ls~ive~D--PsIL-~-~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~ 907 (1801)
...|+.++..|...| .+..+.||..|++||+++.+.= |.+- . ...+...|..++.|..+.||++|-..+-.+...
T Consensus 55 ~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 55 SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 346778899999999 6888999999999999998633 3332 1 234667788899999999999987776663332
Q ss_pred H--------HHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcc-----h-HHHHHHhhcccCCCchhHHHHHHHH
Q 047845 908 I--------LMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTE-----S-TTACIEIISRVNDDESSIQDLVCKT 973 (1801)
Q Consensus 908 L--------~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~-----~-~~i~~~iL~Rv~DEEdsIkdLa~~t 973 (1801)
. .+...+.|.+-+..+...||-.+++.+..++...+..+. . ..++-.+..-++|.+..||+-|.++
T Consensus 135 ~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~ 214 (249)
T 2qk1_A 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES 214 (249)
T ss_dssp SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 456788888888888899999999999999988764211 2 3455566666799999999999999
Q ss_pred HHhhc
Q 047845 974 FYEFW 978 (1801)
Q Consensus 974 f~elW 978 (1801)
+..+-
T Consensus 215 l~~i~ 219 (249)
T 2qk1_A 215 FAILI 219 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.96 E-value=0.037 Score=67.37 Aligned_cols=141 Identities=7% Similarity=0.035 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCC-ChhHHhHHHHHHHHHHhcCcccc---CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-------
Q 047845 839 ILHLLLVSLREN-SPIIRAKALRAVSIIVEVDPEVL---CDKRVQLAVEGRFCDSAISVREAALELLAGILLH------- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~-s~~vRSKALK~Ls~ive~DPsIL---~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~------- 907 (1801)
++..++..|.++ .+.+|..|..+|+.+...++.-. ....+-..+...+.++.+.||+.|+..+|.+...
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 566777778777 89999999999999998665321 1233445555678899999999999999995421
Q ss_pred -HHHHHHHHHHHHhCC-CChhhhHHHHHHHHHHhhhC-CCC--cchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 908 -ILMLYFVKVAERIKD-TGVSVRKRAIKIIRDMCTSN-TNF--TESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D-~GVsVRKRvIKilkdIy~~~-p~~--~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
+.....+.+...+.+ ....||+.++..+..++... |.. .....+...|+.-+.++++.|+.-|..+|..+--
T Consensus 145 ~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 221 (450)
T 2jdq_A 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSD 221 (450)
T ss_dssp HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence 223467888888884 78999999999999999654 331 1122233445555567777888888888877653
No 32
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.84 E-value=0.0052 Score=67.51 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=92.4
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAE 918 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~e 918 (1801)
.+..|+..|.++.+.||..|+.+|+.+- .+.....+...+.|+++.||.+|+..+|++... +..+.|..
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~~ 150 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGDE---RAVEPLIK 150 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH---HHHHHHHH
Confidence 4566677788899999999999999873 233445555688999999999999999995332 34566777
Q ss_pred HhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCC
Q 047845 919 RIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEP 982 (1801)
Q Consensus 919 Ri~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~ 982 (1801)
.+.|....||..++..|..+-. ..+...+...++|++..|+.-|.+.|..+...+.
T Consensus 151 ~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 151 ALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 8889999999999999999831 2333445555678888999999999998887654
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.71 E-value=0.0078 Score=65.78 Aligned_cols=140 Identities=15% Similarity=0.105 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccc---cCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-------
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEV---LCDKRVQLAVEGRFCDSAISVREAALELLAGILLH------- 907 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsI---L~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~------- 907 (1801)
..+..|+..|.++.+.+|..|+.+|+.+...++.. +....+-..+...+.+.++.||..|+..++.+...
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35678888899999999999999999998766532 11222334455578899999999999999995421
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH---HHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST---TACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~---~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+.....+.|...+.+....||+.++..|..++...++..... .+...|+.-+.+++..|++.|..+|..+
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 334578999999999999999999999999997644422111 1124566666788889999999988765
No 34
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.63 E-value=0.011 Score=64.46 Aligned_cols=120 Identities=19% Similarity=0.184 Sum_probs=93.3
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAE 918 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~e 918 (1801)
.+..|+..|.++.+.+|..|+++|+.+- .+.....+...+.|+++.||.+|+..+|++... +..+.|..
T Consensus 46 ~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~~L~~ 114 (201)
T 3ltj_A 46 AVEPLIKALKDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLIK 114 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHHH
Confidence 3456677778889999999999999873 234445666688999999999999999984332 35666778
Q ss_pred HhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 919 RIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 919 Ri~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
.+.|+...||..++..|..+-. +. +...++..+.|++..|+..|...|..+
T Consensus 115 ~l~d~~~~vr~~a~~aL~~~~~-----~~---~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 115 ALKDEDWFVRIAAAFALGEIGD-----ER---AVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTC-----GG---GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHhCC-----HH---HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999998742 12 233455666788889999999999877
No 35
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.57 E-value=0.012 Score=64.55 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAE 918 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~e 918 (1801)
.+..|+..|.++.+.+|..|+++|+.+- .+.....+...+.|+++.||.+|+..+|++... +..+.|.+
T Consensus 51 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~---~~~~~L~~ 119 (211)
T 3ltm_A 51 AVEPLIKALKDEDAWVRRAAADALGQIG--------DERAVEPLIKALKDEDGWVRQSAAVALGQIGDE---RAVEPLIK 119 (211)
T ss_dssp GHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG---GGHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH---HHHHHHHH
Confidence 3456677788889999999999999874 234445566688999999999999999985332 34567788
Q ss_pred HhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 919 RIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 919 Ri~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
.+.|+...||..++..|..+-. +.. ...++..+.|++..|+.-|.+.|..+
T Consensus 120 ~l~d~~~~vr~~a~~aL~~~~~-----~~~---~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 120 ALKDEDWFVRIAAAFALGEIGD-----ERA---VEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC-----GGG---HHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCC-----HHH---HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 8899999999999999998831 222 33344555788889999999999876
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.54 E-value=0.015 Score=66.73 Aligned_cols=134 Identities=15% Similarity=0.085 Sum_probs=101.8
Q ss_pred hhHHHHHHHHHH-HhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Q 047845 834 RGFDKILHLLLV-SLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLY 912 (1801)
Q Consensus 834 ~sFd~iL~~LL~-~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~y 912 (1801)
..++.++..+.. .+.++.+.||..|+.+|+.+-..+|.. .+.+...+...+.|+++.||.+|+.-+|++... ..
T Consensus 86 ~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~---~~ 160 (280)
T 1oyz_A 86 KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY--SPKIVEQSQITAFDKSTNVRRATAFAISVINDK---AT 160 (280)
T ss_dssp TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------CC
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc--cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH---HH
Confidence 345666666653 567888999999999999998766532 345566677789999999999999999984332 35
Q ss_pred HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 913 FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 913 y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
.+.|.+.+.|+...||..++..|..+... -..+...++..+.|++..|+..|...|..+.
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 56778888999999999999999887311 2344556667778999999999999998775
No 37
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.51 E-value=0.0011 Score=68.06 Aligned_cols=126 Identities=10% Similarity=0.038 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Q 047845 832 FSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILML 911 (1801)
Q Consensus 832 f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~ 911 (1801)
+....+..+..++..|.++.+.+|..|+.+|+.+- ++ .+ ..+...+.|+.+.||.+|+..+|++... .
T Consensus 6 ~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~--~~------~~-~~L~~~L~d~~~~vR~~A~~aL~~~~~~---~ 73 (131)
T 1te4_A 6 HHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMG--DE------AF-EPLLESLSNEDWRIRGAAAWIIGNFQDE---R 73 (131)
T ss_dssp ---------------CCSSCCCSSSSCCSSTTSCS--ST------TH-HHHHHGGGCSCHHHHHHHHHHHGGGCSH---H
T ss_pred ccccccccHHHHHHHhcCCCHHHHHHHHHHHHHhC--ch------HH-HHHHHHHcCCCHHHHHHHHHHHHhcCCH---H
Confidence 34455777888999999999999999999998652 22 34 4556688899999999999999985432 3
Q ss_pred HHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 912 YFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 912 yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
..+.|...+.|+...||..++..|..+.. ..+...++..+.|++..|+..|...|.++
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 45666777789999999999999998851 22333444555788889999998887653
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.066 Score=61.33 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=93.7
Q ss_pred chhh-hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHh-cCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 047845 830 NSFS-RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVE-VDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAGIL 905 (1801)
Q Consensus 830 ~~f~-~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive-~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~ 905 (1801)
..|. +....+|-.|+..+.+..+.||..|..+|..+++ .+|.... -+.+...+...+....+.||++++..|+++.
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 3566 6667788888999999999999999999999988 6675443 4567777777788889999999999999933
Q ss_pred HH----------HH-HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 906 LH----------IL-MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 906 ~~----------L~-~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
.. .. ..+.+.+...+.|+-..||+.++..+-.||....+
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 11 33 56778889999999999999999999999977655
No 39
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.21 E-value=0.02 Score=64.37 Aligned_cols=140 Identities=15% Similarity=0.108 Sum_probs=106.3
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccc---cCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH---H-----
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEV---LCDKRVQLAVEGRFCDSAISVREAALELLAGILL---H----- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsI---L~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~---~----- 907 (1801)
.+..|+..|.++.+.+|..|+.+|+.+...++.- +....+-..+...+.++++.||..|+..++.+.. .
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 176 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 176 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5778888899999999999999999998776643 3333445556668889999999999999999442 1
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-HH--HHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-TT--ACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-~~--i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
......+.|.+-+.+....||+.++..|..++...++.... .+ +...++.-+.+.++.|+..|..++..++
T Consensus 177 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 23456889999999999999999999999998655441111 11 2244666667777789999999888765
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.19 E-value=0.014 Score=63.68 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcccc---CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH--H----
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVL---CDKRVQLAVEGRFCDSAISVREAALELLAGILL--H---- 907 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL---~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~--~---- 907 (1801)
+.+-..|...|.++.+.+|..|+.+|+.+...++..- ....+-..+...+.++++.||+.|+..+|.+.. .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4444566666778899999999999999997765322 122334455568889999999999999999542 1
Q ss_pred --HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-H--HHHHHhhcccCCCchhHHHHHHHHHHhhccC
Q 047845 908 --ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-T--TACIEIISRVNDDESSIQDLVCKTFYEFWFE 980 (1801)
Q Consensus 908 --L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-~--~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~ 980 (1801)
+.....+.|...+.+....||+.++..+..++...++.... . .+...++.-+.+++..|+.-|..+|..+...
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 22346789999999999999999999999998755442111 1 1234566666777778999999999888754
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.18 E-value=0.039 Score=61.38 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcccc---CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH--H-----
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVL---CDKRVQLAVEGRFCDSAISVREAALELLAGILL--H----- 907 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL---~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~--~----- 907 (1801)
..+..|+..|.++.+.+|..|+.+|+.+...++..- ....+-..+...+.++++.||++|+..++.+.. .
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 123 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 123 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 457778888888899999999999999987755322 222344455567889999999999999999441 1
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-H--HHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-T--TACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-~--~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
......+.|...+.+....||+.++..+..++...++.... . .+...++.-+.+.++.|+.-|..+|..+-.
T Consensus 124 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 33357899999999999999999999999998655442111 1 123445566667777899988888887764
No 42
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.11 E-value=0.024 Score=63.12 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=109.4
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcccc---CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVL---CDKRVQLAVEGRFCDSAISVREAALELLAGILLH-------- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL---~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------- 907 (1801)
.+..|+..|.++.+.+|..|+.+|..+...+|..- ....+-..+...+.++++.||..|+..++.+...
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 166 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 166 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667888888999999999999999997665422 1223444555688899999999999999995321
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-H--HHHHHhhcccCCCchhHHHHHHHHHHhhccCCCC
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-T--TACIEIISRVNDDESSIQDLVCKTFYEFWFEEPS 983 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-~--~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~ 983 (1801)
......+.|...+.+....||+.++..+..++...++.... . .+...++.-+.+++..|++.|..++..+...+..
T Consensus 167 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 167 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 33458899999999999999999999999999755442111 1 1124566666788889999999999999876643
No 43
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.91 E-value=0.049 Score=62.46 Aligned_cols=128 Identities=14% Similarity=0.111 Sum_probs=93.6
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH-H-HHHHHHHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL-L-HILMLYFVKVA 917 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~-~-~L~~~yy~~I~ 917 (1801)
+..++..|.++.+.+|..|+++|+.+- .+.+...+...+.|..+.||.+|+..+|++. . .......+.+.
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~ 96 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILN 96 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 456777788888999999999999874 3556666777888999999999999999843 2 22233344443
Q ss_pred H-HhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 918 E-RIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 918 e-Ri~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
. ...|+...||..++..|..++...+.+ ...+...++..++|++..|+..|...+..+
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~~--~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPIY--SPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCcc--cHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 2 356888899999999999988655432 234455666777898889998888887654
No 44
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.79 E-value=0.54 Score=59.32 Aligned_cols=104 Identities=7% Similarity=0.045 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc--c---cCchhHHHHHHhhc-CCCChhHHHHHHHHHHHHHHH------
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPE--V---LCDKRVQLAVEGRF-CDSAISVREAALELLAGILLH------ 907 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs--I---L~~~~Vq~~I~~rl-~DsS~sVRDAAldLIGkI~~~------ 907 (1801)
+..|+..+.++.+..+-.|++++-.++..+++ | ...-.|...| +.| .++.+.++..|...++.|...
T Consensus 78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv-~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV-SFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHH-HHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHH-HHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45567777888899999999999988865542 1 2222223333 344 356688999888899986432
Q ss_pred --HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 908 --ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 908 --L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
+..-..+.|+.-+.+....||..|+..|..|....++
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~ 195 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA 195 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH
Confidence 2234678888889999999999999999999865544
No 45
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=95.56 E-value=0.029 Score=62.89 Aligned_cols=141 Identities=14% Similarity=0.083 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcccc---CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVL---CDKRVQLAVEGRFCDSAISVREAALELLAGILLH-------- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL---~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------- 907 (1801)
.+..|+..|.++.+.+|..|+.+|+.+...++..- ....+-..+...+.++++.||+.|+..++.+...
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 134 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHH
Confidence 46778888888889999999999999998665322 1222444555678889999999999999995321
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcch-H--HHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTES-T--TACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~-~--~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
......+.|...+.+....||+.++..|..++...++.... . .+...++.-+.++++.|+..|..+|..+-.
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 33357899999999999999999999999998655431111 0 112445566667777899999999988753
No 46
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.47 E-value=0.53 Score=54.20 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=101.5
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHH-HHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH--HH
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSI-IVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH--IL 909 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~-ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~--L~ 909 (1801)
.+.|.++..|=.+-.... ..|-..||-+-. ++..||++| |.+-..|..=-.|++.-||....++|+. ...+ +.
T Consensus 12 ~~~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~ 88 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASP-STKCELLAKVQETVLGSCAELA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL 88 (257)
T ss_dssp HHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHhHH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555533322222 577888888887 678899966 3444444444569999999999999999 5444 88
Q ss_pred HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhh-------CCCCc--------chHHHHHHhhcccCCCchhHHHHHHHHH
Q 047845 910 MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTS-------NTNFT--------ESTTACIEIISRVNDDESSIQDLVCKTF 974 (1801)
Q Consensus 910 ~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~-------~p~~~--------~~~~i~~~iL~Rv~DEEdsIkdLa~~tf 974 (1801)
.+..+.|..-+.|..++|-||||..+-.+|-. +|+.+ ....+-.+|+.....+-+|||=.+.+.+
T Consensus 89 ~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~ 168 (257)
T 3gs3_A 89 PHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFL 168 (257)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHH
Confidence 89999998889999999999999976666532 33321 1223336677777777779999999988
Q ss_pred Hhhcc
Q 047845 975 YEFWF 979 (1801)
Q Consensus 975 ~elWF 979 (1801)
+.+-.
T Consensus 169 e~vIl 173 (257)
T 3gs3_A 169 EGVVV 173 (257)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.45 E-value=0.99 Score=56.73 Aligned_cols=103 Identities=8% Similarity=0.060 Sum_probs=72.9
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhcC--ccc---cCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH-------
Q 047845 841 HLLLVSLRENSPIIRAKALRAVSIIVEVD--PEV---LCDKRVQLAVEGRFC-DSAISVREAALELLAGILLH------- 907 (1801)
Q Consensus 841 ~~LL~~L~~~s~~vRSKALK~Ls~ive~D--PsI---L~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~------- 907 (1801)
.-|+..+.++.+.++-.|++.+-.++... |.| ...-.|-..| +.|. ++.+.|+..|.-.|+.|.+.
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV-~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV-SFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHH-HHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHH-HHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44567778889999999999998887654 322 1111122222 2443 44588999999999986431
Q ss_pred H-HHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 908 I-LMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 908 L-~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
+ ..-..+.++..+.+....||..++..|..|....+.
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~ 176 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA 176 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 2 224688899999999999999999999999865544
No 48
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.45 E-value=1.6 Score=56.36 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCC-ChhHHHHHHHHHHHHHH------
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDS-AISVREAALELLAGILL------ 906 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~Ds-S~sVRDAAldLIGkI~~------ 906 (1801)
..+..|+..|.++.+.+|..|+.+|..+...++. +.....|...+ ..+.+. ...++++|+.++..+..
T Consensus 140 g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv-~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~ 218 (644)
T 2z6h_A 140 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218 (644)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH-HHHTTCCCHHHHHHHHHHHHHHTTCTTHHH
T ss_pred CChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHH-HHHHcCChHHHHHHHHHHHHHHhcCcccHH
Confidence 3567788888888899999999999998865542 22233344333 244433 35788888888887322
Q ss_pred H-HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 907 H-ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 907 ~-L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
. +.....+.|+..+.+....||..++.+|..++...+.......+...++.-+.+++..|+..|..+|..+--
T Consensus 219 ~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 1 333467888999999999999999999999998777655555555556666667777899988888887743
No 49
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.16 E-value=0.48 Score=57.55 Aligned_cols=125 Identities=17% Similarity=0.237 Sum_probs=93.4
Q ss_pred hHHhHHHHHHHHH-HhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH--HHHHHHHHHHHHhCCCChhhh
Q 047845 853 IIRAKALRAVSII-VEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH--ILMLYFVKVAERIKDTGVSVR 928 (1801)
Q Consensus 853 ~vRSKALK~Ls~i-ve~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~--L~~~yy~~I~eRi~D~GVsVR 928 (1801)
..+...||-+-.+ +..||++|+. .+...+ .=-.|.++.||...+++|+. ...+ +..+..+.|..-+.|..+.|-
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~-fl~~il-~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~ 117 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDN-FLDEII-AFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVV 117 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGG-GHHHHH-GGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHH-HHHHHH-HhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 5688888888885 7799998843 333333 34558899999999999999 5544 778888888888899999999
Q ss_pred HHHHHHHHHHhh-------hCCCC--------cchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 929 KRAIKIIRDMCT-------SNTNF--------TESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 929 KRvIKilkdIy~-------~~p~~--------~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
||||..+-.||- .+|+. .....+-..|+..+..+-+|||=.+.+.++.+-.
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl 183 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 999998777772 23332 1223334667777776777999999998888774
No 50
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.96 E-value=15 Score=48.83 Aligned_cols=142 Identities=16% Similarity=0.074 Sum_probs=89.1
Q ss_pred hcCChHHHHHHHHHHHHHHhc-Ccchhchh----hHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhcccccCCCCc
Q 047845 1246 RMEDFSVKVRSLQALGFVLIA-RPEHMLEK----DIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMETDKGSGNE 1320 (1801)
Q Consensus 1246 ~~~d~~iR~~AL~aLG~lc~s-~P~l~~~~----~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~ 1320 (1801)
...+..+|..|..+|+.+|.. .|+..... ++..-+-..|.++.....+..++..|....
T Consensus 546 ~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa---------------- 609 (810)
T 3now_A 546 LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA---------------- 609 (810)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT----------------
T ss_pred ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh----------------
Confidence 345678899999999999975 56653321 122333334443322222222222222110
Q ss_pred ccccccCCccccccccCCCcchHHHHHH-HHHHHHHHHHcCCChhHHHHHHHHHHHHHh-----cCccCCCcccceeeec
Q 047845 1321 VEYTVEDGHSVPVAAGAGDTNICGGIIQ-LYWDKILGRCLDANEEVRQTALKIVEVVLR-----QGLVHPITCVPYLIAL 1394 (1801)
Q Consensus 1321 ~~~~~~~~k~~~v~~g~~Dsgv~s~ivQ-rYL~~IL~~~ls~~~~vr~~Al~vl~~ilr-----QGLVhP~~cvPtLIAL 1394 (1801)
..+| .....|++ ..|+.+.++..+.+..++..|+.+|..+.. .-++.=..++|.|+.|
T Consensus 610 ---------------~~~d-~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 610 ---------------SMNE-SVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL 673 (810)
T ss_dssp ---------------TSCH-HHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHG
T ss_pred ---------------cCCH-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHH
Confidence 0011 12223333 467888888899999999999999998742 2233223589999999
Q ss_pred ccCcchhhHHHHHHHHHHHHhhChh
Q 047845 1395 ETDPQEVNSKLAHHLLMNMNEKYPA 1419 (1801)
Q Consensus 1395 eTdp~~~Ir~~A~~lL~~L~eKyes 1419 (1801)
..+++..++.-|-..|..|-..++.
T Consensus 674 L~s~d~~vq~~Aa~ALanLt~~s~~ 698 (810)
T 3now_A 674 CEDEDEETATACAGALAIITSVSVK 698 (810)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHCHH
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999888775554
No 51
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.91 E-value=0.31 Score=66.37 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=55.1
Q ss_pred hhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHh-cCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 047845 832 FSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIVE-VDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH 907 (1801)
Q Consensus 832 f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive-~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~ 907 (1801)
+..-++..+.++...+..+.+.++.++|+||+.-+. .|++.+..+.+...+-+.+.| +.+|++|+|.+.-|..+
T Consensus 187 ~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 187 MSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNK 261 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHc
Confidence 344455555555555555788999999999999987 577777767777777777776 89999999998885443
No 52
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.38 E-value=0.15 Score=59.99 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=98.7
Q ss_pred HHHHH-HhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHH---H----
Q 047845 841 HLLLV-SLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFC-DSAISVREAALELLAGILL---H---- 907 (1801)
Q Consensus 841 ~~LL~-~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~---~---- 907 (1801)
..++. .|.++.+.||..|+.+|+.++.-+|. |+....+...+ ..|. |+++.||..|+--|+.+.. .
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll-~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL-RLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH-HHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 34555 77888999999999999999988773 33333333333 3454 5689999999999999432 1
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcc-hHH--HHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTE-STT--ACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~-~~~--i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
.....++.|..-+.+....||+++...+..++...++... ..+ ++..++.-+...+..|++-|..++..+-
T Consensus 163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237 (296)
T ss_dssp HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 2235788999999999999999999999999988665321 112 1334555556666689999888888775
No 53
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.33 E-value=0.89 Score=52.58 Aligned_cols=148 Identities=11% Similarity=0.087 Sum_probs=113.3
Q ss_pred hhhhhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHH----hcCccccCc--hhHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 047845 831 SFSRGFDKILHLLLVSLRENSPIIRAKALRAVSIIV----EVDPEVLCD--KRVQLAVEGRFCDSAISVREAALELLAGI 904 (1801)
Q Consensus 831 ~f~~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~iv----e~DPsIL~~--~~Vq~~I~~rl~DsS~sVRDAAldLIGkI 904 (1801)
.+....|-+++++---+.++.++|=.+++..|..++ +.++.+-+. ..+-..+..|+-|+...||+++-+++-.+
T Consensus 80 ~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l 159 (266)
T 2of3_A 80 SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVL 159 (266)
T ss_dssp HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 445667888888765666888888889999988875 445555542 34667777899999999999999999553
Q ss_pred HHH-HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHH---HHhhcccCCCchhHHHHHHHHHHhhccC
Q 047845 905 LLH-ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTAC---IEIISRVNDDESSIQDLVCKTFYEFWFE 980 (1801)
Q Consensus 905 ~~~-L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~---~~iL~Rv~DEEdsIkdLa~~tf~elWF~ 980 (1801)
..- -..+.++.|++.+....--+|=-++..+..+...+.--+. ... .-|..-++|.+.+||+-|..++.++|..
T Consensus 160 ~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~--~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 160 SDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPL--KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGG--GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCcc--ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 321 3367999999999999988999999999888877644221 122 3455778999999999999999999974
No 54
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=94.33 E-value=0.074 Score=54.21 Aligned_cols=86 Identities=21% Similarity=0.074 Sum_probs=68.7
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047845 841 HLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYFVKVAERI 920 (1801)
Q Consensus 841 ~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy~~I~eRi 920 (1801)
..|+..|.++.+.||..|+++|+.+- .+.....+...+.|+++.||.+|+.-+|++.. .+..+.|.+.+
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~--------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~a~~~L~~~l 113 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLEDDSGFVRSGAARSLEQIGG---ERVRAAMEKLA 113 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HHHHHHHHHHH
Confidence 66778888999999999999999864 24445556667889999999999999999543 24566777788
Q ss_pred CCCChhhhHHHHHHHHH
Q 047845 921 KDTGVSVRKRAIKIIRD 937 (1801)
Q Consensus 921 ~D~GVsVRKRvIKilkd 937 (1801)
.|+...||..++.-|..
T Consensus 114 ~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 114 ETGTGFARKVAVNYLET 130 (131)
T ss_dssp TSCCTHHHHHHHHHGGG
T ss_pred hCCCHHHHHHHHHHHHh
Confidence 89999999999887654
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.31 E-value=2.3 Score=56.52 Aligned_cols=139 Identities=9% Similarity=0.070 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHH-----
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSAI-SVREAALELLAGILLH----- 907 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS~-sVRDAAldLIGkI~~~----- 907 (1801)
..+..|+..|.++.+.+|..|+.+|..+...++. +.....|...| ..+.+.++ .++++|+.++..+...
T Consensus 276 g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv-~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~ 354 (780)
T 2z6g_A 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV-NIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 354 (780)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH-HHHTTCCCHHHHHHHHHHHHHHHTSTTHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH-HHHhcCCHHHHHHHHHHHHHHhhcChHHHH
Confidence 3466778888888899999999999877654432 22233333333 34555554 4566788887773221
Q ss_pred --HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 908 --ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 908 --L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+.....+.|...+.+....+++.++..|..++...+.+.....+...++.-+.+++..|+.-|..+|..+
T Consensus 355 ~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 355 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp HHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2334568888889999999999999999999987766555555555566666777778888888888776
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.51 E-value=0.97 Score=53.04 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=103.8
Q ss_pred HHHHHHhhhccchhhhhH---HHHHHHHHHHhcC-CChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCC
Q 047845 819 VKKITLALGQNNSFSRGF---DKILHLLLVSLRE-NSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSA 890 (1801)
Q Consensus 819 ~~~i~~~l~~~~~f~~sF---d~iL~~LL~~L~~-~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS 890 (1801)
+.++.-.++...+-++.. ...+..|+..|.+ +.+.+|.+|+.+|+.|+.-.|. +.....+. .+...+.+..
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~-~L~~lL~~~d 180 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS-VLMRAMQQQV 180 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH-HHHHHHHSSC
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH-HHHHHHcCCC
Confidence 444444444555544321 1345566666664 4789999999999999976543 22333333 4445677889
Q ss_pred hhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC--------cchHHHHHH
Q 047845 891 ISVREAALELLAGILLH--------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF--------TESTTACIE 954 (1801)
Q Consensus 891 ~sVRDAAldLIGkI~~~--------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~--------~~~~~i~~~ 954 (1801)
+.||..|+-+|+.+... ......+.|++-+..+...||..++..+..|....+.. .........
T Consensus 181 ~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~ 260 (296)
T 1xqr_A 181 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRH 260 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHH
Confidence 99999999999994321 34468899999999999999999999999987653320 011122222
Q ss_pred hhcccCCCc--hhHHHHHHHHHHhhcc
Q 047845 955 IISRVNDDE--SSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 955 iL~Rv~DEE--dsIkdLa~~tf~elWF 979 (1801)
.+..++.-| +-|.++|.++++..|=
T Consensus 261 ~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 261 RCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 334444222 4677888888887773
No 57
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.43 E-value=15 Score=49.47 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhccccccccccCccchhhhH
Q 047845 1160 LTVVHACIKCLCSVSKISGKGL-STVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNL 1238 (1801)
Q Consensus 1160 ~~vv~acv~CL~~l~~~~~~~~-~~v~~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l 1238 (1801)
-....++++||+++........ ..+..++. .|.....++.....++++++|-++++.... ...+..++
T Consensus 463 w~~~eaal~al~~i~~~~~~~~~~~l~~l~~----~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-------~~~l~~vl 531 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVNYSDVVPGLIG----LIPRISISNVQLADTVMFTIGALSEWLADH-------PVMINSVL 531 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSCCSHHHHHHH----HGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-------HHHHTTTH
T ss_pred hHHHHHHHHHHHHHHhhcCchhhHHHHHHHH----HHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-------HHHHHHHH
Confidence 4678899999999998776433 23333333 333333234334456777787666543210 02344555
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHH
Q 047845 1239 NLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILE 1281 (1801)
Q Consensus 1239 ~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~ 1281 (1801)
..+...+ .+..||..|..+|..+|..-++.+. +.+..++.
T Consensus 532 ~~l~~~l--~~~~V~~~A~~al~~l~~~~~~~l~-p~~~~il~ 571 (963)
T 2x19_B 532 PLVLHAL--GNPELSVSSVSTLKKICRECKYDLP-PYAANIVA 571 (963)
T ss_dssp HHHHHHT--TCGGGHHHHHHHHHHHHHHTGGGCT-TTHHHHHH
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 5554443 3478999999999999988776544 33444433
No 58
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.81 Score=52.69 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=81.0
Q ss_pred hHHHHHHHHHH-HhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH-----
Q 047845 835 GFDKILHLLLV-SLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH----- 907 (1801)
Q Consensus 835 sFd~iL~~LL~-~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~----- 907 (1801)
....++..|+. .|++..+.+|..|+.++..+++.... ...+...|..-+..-+|.||.+++..|.+ +...
T Consensus 99 ~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~ 175 (278)
T 4ffb_C 99 LISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNV 175 (278)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcC
Confidence 34566665654 47899999999999999999986532 24456677777888899999999999999 4332
Q ss_pred ----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhC
Q 047845 908 ----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSN 942 (1801)
Q Consensus 908 ----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~ 942 (1801)
....+.+.|...+.|+--.||+-+++++-++|.-.
T Consensus 176 ~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 176 NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 23446667777889999999999999999999543
No 59
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=91.69 E-value=0.49 Score=56.97 Aligned_cols=97 Identities=18% Similarity=0.222 Sum_probs=81.8
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHH---HHHHHHHHHHH
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGIL---LHILMLYFVKV 916 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~---~~L~~~yy~~I 916 (1801)
.|.|.+-+.++.+-+|+-||++|+.| .||+++. .+...|.+++.|.+|.||.+|+=-+.|+. +.+...|.+.+
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I--~~~~m~~--~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l 181 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQI--TDSTMLQ--AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEA 181 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH--CCTTTHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHH
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcC--CCHHHHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 36677788899999999999999999 4666654 47778888999999999999998888833 23778899999
Q ss_pred HHHhCCCChhhhHHHHHHHHHHhh
Q 047845 917 AERIKDTGVSVRKRAIKIIRDMCT 940 (1801)
Q Consensus 917 ~eRi~D~GVsVRKRvIKilkdIy~ 940 (1801)
.+.+.|...+|-=+++.++.+|+.
T Consensus 182 ~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 182 QEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCccHHHHHHHHHHHHHh
Confidence 999999998888899999999874
No 60
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.88 E-value=57 Score=43.91 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHhhhcCCCCChhhhhhHHHHHHHHHhhccccccccccCccchhhhHH
Q 047845 1160 LTVVHACIKCLCSVSKISGKGLSTVEHLILVFFKYLDSHNPDSKQVVGRSLFCLGLLIRYGSSLLTTSYEKNIDIVSNLN 1239 (1801)
Q Consensus 1160 ~~vv~acv~CL~~l~~~~~~~~~~v~~~i~~~~~~L~~~~~d~~~~l~R~L~~lGll~Ry~~~~~~~~~~k~~~v~~~l~ 1239 (1801)
..|-..++||++++...+..+......++..+...|. .....++-+.+.-||+-|...+. -+++..+.
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~------~~v~~~A~~al~~l~~~~~~~l~------p~~~~ll~ 587 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGLN------SSMSAQATLGLKELCRDCQLQLK------PYADPLLN 587 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHHH------SSCHHHHHHHHHHHHHHCHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhC------hHHHHHHHHHHHHHHHHHHHhcc------ccHHHHHH
Confidence 3566788899999988777665656666666666662 11233444455555543321111 12233333
Q ss_pred HHHHHhhc--CChHHHHHHHHHHHHHHhcCc
Q 047845 1240 LFKRYLRM--EDFSVKVRSLQALGFVLIARP 1268 (1801)
Q Consensus 1240 lf~~~~~~--~d~~iR~~AL~aLG~lc~s~P 1268 (1801)
.+...+.. .+...+..+++++|.+..+-|
T Consensus 588 ~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 588 ACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 33333333 467889999999999998765
No 61
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=90.15 E-value=0.66 Score=53.47 Aligned_cols=144 Identities=8% Similarity=0.059 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcC-ccccC--------chhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVD-PEVLC--------DKRVQLAVEGRFCDSAISVREAALELLAG-ILLH 907 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~D-PsIL~--------~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~ 907 (1801)
.+...+-..+.+..+.|-.+|+.+|..+++.= +.... ...+...|++++.|+.+.+|++|++.+-. +...
T Consensus 55 ~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 55 RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc
Confidence 34445556778999999999999999998742 22111 12234456667899999999999998877 3222
Q ss_pred -HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCC--Ccch---HHHHHHhhcccCCCchhHHHHHHHHHHhh--cc
Q 047845 908 -ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTN--FTES---TTACIEIISRVNDDESSIQDLVCKTFYEF--WF 979 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~--~~~~---~~i~~~iL~Rv~DEEdsIkdLa~~tf~el--WF 979 (1801)
....+.+.|..-+......||--++..|..+.....- .+-. ..++..+..-++|.+..||+-|.+++-++ |+
T Consensus 135 ~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 135 TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 3355678888888999999999999999998766322 1111 12223344556899999999999999887 66
Q ss_pred CC
Q 047845 980 EE 981 (1801)
Q Consensus 980 ~p 981 (1801)
.+
T Consensus 215 G~ 216 (278)
T 4ffb_C 215 GN 216 (278)
T ss_dssp --
T ss_pred Cc
Confidence 54
No 62
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.73 E-value=8.3 Score=52.81 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHhhccCCc-h-hHHHHHHHHHHHhhhcCCC-CChhhhh-hHHHHHHHHHhhccccccccccCccchh
Q 047845 1160 LTVVHACIKCLCSVSKISGKG-L-STVEHLILVFFKYLDSHNP-DSKQVVG-RSLFCLGLLIRYGSSLLTTSYEKNIDIV 1235 (1801)
Q Consensus 1160 ~~vv~acv~CL~~l~~~~~~~-~-~~v~~~i~~~~~~L~~~~~-d~~~~l~-R~L~~lGll~Ry~~~~~~~~~~k~~~v~ 1235 (1801)
-....+|++|+++|....... . ..+..++..+......... ++.+.+. +..+++|-+++++. . ....+.
T Consensus 467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~---~----~~~~l~ 539 (1049)
T 3m1i_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK---A----HWNFLR 539 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH---H----CHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH---h----HHHHHH
Confidence 467889999999998765433 1 2233344433332111111 2333333 45566665554332 1 012355
Q ss_pred hhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhc
Q 047845 1236 SNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHML 1272 (1801)
Q Consensus 1236 ~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~ 1272 (1801)
.++..+...+...+..||..|-.++..+|...+..+.
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~ 576 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV 576 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666555554445689999999999999987666553
No 63
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=89.53 E-value=65 Score=42.48 Aligned_cols=97 Identities=15% Similarity=0.343 Sum_probs=71.5
Q ss_pred hHHHHHH--HHHHHHHHHHcCCChhHHHHHHHHHHHHHhcC------ccC---CC--cccceeeecccCcchhhHHHHHH
Q 047845 1342 ICGGIIQ--LYWDKILGRCLDANEEVRQTALKIVEVVLRQG------LVH---PI--TCVPYLIALETDPQEVNSKLAHH 1408 (1801)
Q Consensus 1342 v~s~ivQ--rYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQG------LVh---P~--~cvPtLIALeTdp~~~Ir~~A~~ 1408 (1801)
+...|+. .+|+.|.++.++.+..+|.+|.++|..+..-. +.+ |. ..++.||+|..+.+..++.-|-.
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAag 676 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAA 676 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHH
Confidence 4556775 59999999999999999999999999996421 222 21 13778999999999999999999
Q ss_pred HHHHHHhhChhhhhhhhh--hHHHHHHHHHHH
Q 047845 1409 LLMNMNEKYPAFFESRLG--DGLQMSFVFIQS 1438 (1801)
Q Consensus 1409 lL~~L~eKyes~v~~~~~--~GI~~Af~yq~~ 1438 (1801)
.|..+..-++.....-+. .||......-+.
T Consensus 677 ALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 677 IFANIATTIPLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHccccHHHHHHHHhc
Confidence 998887777665443332 466655555444
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.45 E-value=26 Score=47.57 Aligned_cols=145 Identities=11% Similarity=0.120 Sum_probs=104.7
Q ss_pred hhHHHHHHhhhccchhhhhHHHHH----HHHHHHhcCCChhHHhHHHHHHHHHHhcCc-cccCchhHHHHHHhhcCCC-C
Q 047845 817 DTVKKITLALGQNNSFSRGFDKIL----HLLLVSLRENSPIIRAKALRAVSIIVEVDP-EVLCDKRVQLAVEGRFCDS-A 890 (1801)
Q Consensus 817 d~~~~i~~~l~~~~~f~~sFd~iL----~~LL~~L~~~s~~vRSKALK~Ls~ive~DP-sIL~~~~Vq~~I~~rl~Ds-S 890 (1801)
+.+..+..+++...+.+..+.+|| ..+|...++....||.-|-.++..|+..=| .-+ +.+-..+...+..+ .
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~k 147 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI--KALLPHLTNAIVETNK 147 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH--HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHhccccc
Confidence 455555666776666666777777 778888888889999988888888876543 222 45555666566333 2
Q ss_pred hhHHHHHHHHHHHHH---HH----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCc
Q 047845 891 ISVREAALELLAGIL---LH----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDE 963 (1801)
Q Consensus 891 ~sVRDAAldLIGkI~---~~----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEE 963 (1801)
=+.+-+|+++++++. +. ...+..|.+.+++-|+-.-|.|.+.+.+..+|.--.+ ..+....-.||.-+.+++
T Consensus 148 w~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n-~d~~~~~~~~~~~~~~p~ 226 (986)
T 2iw3_A 148 WQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN-KDIERFIPSLIQCIADPT 226 (986)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC-TTTGGGHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC-cchhhhHHHHHHHhcChh
Confidence 589999999999932 22 4567889999999999999999999999999976554 223333345566667776
Q ss_pred h
Q 047845 964 S 964 (1801)
Q Consensus 964 d 964 (1801)
+
T Consensus 227 ~ 227 (986)
T 2iw3_A 227 E 227 (986)
T ss_dssp H
T ss_pred h
Confidence 4
No 65
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=86.34 E-value=51 Score=44.39 Aligned_cols=89 Identities=9% Similarity=0.026 Sum_probs=60.1
Q ss_pred CChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcC--CCChhHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 047845 850 NSPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFC--DSAISVREAALELLAGILLH------ILMLYFVKVAER 919 (1801)
Q Consensus 850 ~s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~--DsS~sVRDAAldLIGkI~~~------L~~~yy~~I~eR 919 (1801)
....-|=-|+-+|+.|.+.=+.-.. -+.+...+ ..+. |..+.||.+|+..||++... +....++.|...
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~ 554 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG 554 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556788899999998775332111 12233333 3455 78999999999999994322 455566667777
Q ss_pred hCCCChhhhHHHHHHHHHHhhhC
Q 047845 920 IKDTGVSVRKRAIKIIRDMCTSN 942 (1801)
Q Consensus 920 i~D~GVsVRKRvIKilkdIy~~~ 942 (1801)
+ | ..|+.++...++++|...
T Consensus 555 l-~--~~v~~~A~~al~~l~~~~ 574 (971)
T 2x1g_F 555 L-N--SSMSAQATLGLKELCRDC 574 (971)
T ss_dssp H-H--SSCHHHHHHHHHHHHHHC
T ss_pred h-C--hHHHHHHHHHHHHHHHHH
Confidence 7 5 679999999999999664
No 66
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=85.25 E-value=2 Score=54.02 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=96.3
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccc---cCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEV---LCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-------- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsI---L~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------- 907 (1801)
++..|+..|.++.+.++..|+++|+.|+..++.. +....+...+..-+.++++.||..|.-.|+.|...
T Consensus 294 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v 373 (529)
T 3tpo_A 294 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 373 (529)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3456677788899999999999999998776532 11122223344567788999999999999995421
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHH-----HHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTAC-----IEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~-----~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
......+.|...+.+....|||.|+..+..++..... ..+..++ ..++.=+...+..|+..+.+.|..+.
T Consensus 374 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 374 VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2334788899999999999999999999998765322 2222221 22333334556678888888887765
No 67
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=85.04 E-value=5.1 Score=49.52 Aligned_cols=139 Identities=9% Similarity=0.053 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccc----cCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHH------
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEV----LCDKRVQLAVEGRFC-DSAISVREAALELLAGILL------ 906 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsI----L~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~------ 906 (1801)
..+..|+..|.++.+.+|..+..+|..+...++.. .....+...+. -+. ++...++.++..++..+..
T Consensus 143 g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~-ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 221 (529)
T 1jdh_A 143 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN-IMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221 (529)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH-HHHHCCCHHHHHHHHHHHHHHTTSTTHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH-HHHhCChHHHHHHHHHHHHHHhcCcccHH
Confidence 35677788888889999999999999887655421 22222322222 333 3345678888888877322
Q ss_pred H-HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 907 H-ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 907 ~-L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
. +.....+.+...+.+....||+.++..+..++...+.......+...++.-+.++++.|+.-|..+|..+
T Consensus 222 ~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L 293 (529)
T 1jdh_A 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp HHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 3346788899999999999999999999999987766554455555566666777778888888887776
No 68
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=82.79 E-value=1.9 Score=54.13 Aligned_cols=140 Identities=13% Similarity=0.116 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcccc---CchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVL---CDKRVQLAVEGRFCDSAISVREAALELLAGILLH-------- 907 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL---~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------- 907 (1801)
++..|+..|.++...++..|+++|+.|+..++..- ....+...+..-+.++++.||..|.-.++.+...
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v 354 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 34567777888999999999999999987765321 1111122233355688899999999999995421
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHH-----HHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTAC-----IEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~-----~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
......+.|...+.+....|||.+...+..++...+. ..+..++ ..++.-+...+..|+..+.+.|..+..
T Consensus 355 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3345788899999999999999999999998765332 2222221 223333445566788888888887754
No 69
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=82.08 E-value=4 Score=47.16 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHH-HHHH--HHHHHH
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAG-ILLH--ILMLYF 913 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I~~~--L~~~yy 913 (1801)
..+|=.|+.-+++++.+||.++-.+|.++.+. .....|-..+...+..-++=+|+..++.++. |-.+ --.++.
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v----~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l 206 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV----VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSL 206 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH----HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 35666778889999999999999988777653 2233355555557788889999999999999 6554 223566
Q ss_pred ---HHHHHHhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 914 ---VKVAERIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 914 ---~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
+.|+..+.|.-.+||.-|+..+-++|....+
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999977655
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=81.61 E-value=90 Score=42.71 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHHHHhcC-CChhHHhHHHHHHHHHHhc-CccccCchhHHHHHH-hhcCCCChhHHHHHHHHHHHHH
Q 047845 831 SFSRGFDKILHLLLVSLRE-NSPIIRAKALRAVSIIVEV-DPEVLCDKRVQLAVE-GRFCDSAISVREAALELLAGIL 905 (1801)
Q Consensus 831 ~f~~sFd~iL~~LL~~L~~-~s~~vRSKALK~Ls~ive~-DPsIL~~~~Vq~~I~-~rl~DsS~sVRDAAldLIGkI~ 905 (1801)
.++..|..++..+...|.. ..+.+...+||||...++- |.+.+..+.+-..+- ..+ +++.+|++|+|.+.-|.
T Consensus 187 ~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L--~~~~~r~~A~ecL~eIv 262 (1023)
T 4hat_C 187 SMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVS 262 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHc--CCHHHHHHHHHHHHHHH
Confidence 3455577777777777753 4677888999999987764 445444344444444 444 35789999999998743
No 71
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=78.75 E-value=13 Score=47.96 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=98.1
Q ss_pred hHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHhhhcccccCCCCcccccccCC
Q 047845 1250 FSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADS-SHIRLKMQALQNLYEYLLDAENQMETDKGSGNEVEYTVEDG 1328 (1801)
Q Consensus 1250 ~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~-~~~~lK~~vL~nl~eFL~~eE~r~~~~~~~~~~~~~~~~~~ 1328 (1801)
.+=|+.|+.+|-.+...||.-+-...+..+++ +|+.+ .+.++=..+|+.|...|...+.-..... +....
T Consensus 36 ~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~-~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~--------~~~~~ 106 (651)
T 3grl_A 36 LDDRRNAVRALKSLSKKYRLEVGIQAMEHLIH-VLQTDRSDSEIIGYALDTLYNIISNDEEEEVEEN--------STRQS 106 (651)
T ss_dssp HHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHH-HHHSCTTCHHHHHHHHHHHHHHHCCC---------------------
T ss_pred hhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHH-HHhcccccHHHHHHHHHHHHHHhCCCCccccccc--------ccccc
Confidence 45599999999999999997777665555554 55543 4556555688888765542221000000 00000
Q ss_pred ccccccccCCCcchHHHHHH--HHHHHHHHHHcCCChhHHHHHHHHHHHHHh------cC-cc-CCCcccceeeecccCc
Q 047845 1329 HSVPVAAGAGDTNICGGIIQ--LYWDKILGRCLDANEEVRQTALKIVEVVLR------QG-LV-HPITCVPYLIALETDP 1398 (1801)
Q Consensus 1329 k~~~v~~g~~Dsgv~s~ivQ--rYL~~IL~~~ls~~~~vr~~Al~vl~~ilr------QG-LV-hP~~cvPtLIALeTdp 1398 (1801)
.++ ..- .+-.++| ..+.-++++.-+.+..+|+.|++++..++. |. +. .| ..+|+||++-.|+
T Consensus 107 ~~~--~~~-----~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p-~gi~~Lv~lL~d~ 178 (651)
T 3grl_A 107 EDL--GSQ-----FTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSP-MGVSRLMDLLADS 178 (651)
T ss_dssp -CH--HHH-----HHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHST-THHHHHHGGGGCS
T ss_pred hHH--HHH-----HHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCc-ccHHHHHHHHhCc
Confidence 000 000 1112332 345666777778889999999999999963 22 22 45 6789999999999
Q ss_pred chhhHHHHHHHHHHHHhhChh
Q 047845 1399 QEVNSKLAHHLLMNMNEKYPA 1419 (1801)
Q Consensus 1399 ~~~Ir~~A~~lL~~L~eKyes 1419 (1801)
...||+.|..+|.+|-+.++.
T Consensus 179 rE~iRneallLL~~Lt~~n~~ 199 (651)
T 3grl_A 179 REVIRNDGVLLLQALTRSNGA 199 (651)
T ss_dssp SHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999886654
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=78.42 E-value=22 Score=38.80 Aligned_cols=150 Identities=13% Similarity=0.211 Sum_probs=111.2
Q ss_pred cchhhhhHHHHHHHHHHHhc-CCChhHHhHHHHHHHHHHhcCccccCc--------------------------------
Q 047845 829 NNSFSRGFDKILHLLLVSLR-ENSPIIRAKALRAVSIIVEVDPEVLCD-------------------------------- 875 (1801)
Q Consensus 829 ~~~f~~sFd~iL~~LL~~L~-~~s~~vRSKALK~Ls~ive~DPsIL~~-------------------------------- 875 (1801)
....-..+++.++.++..+. +.++.+-.--=|.++++....|.+.+.
T Consensus 60 ~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP 139 (253)
T 2db0_A 60 AKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP 139 (253)
T ss_dssp HTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh
Confidence 34455778999988888865 445555444446666666666554332
Q ss_pred ---hhHHHHHHhhcCCCChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchH
Q 047845 876 ---KRVQLAVEGRFCDSAISVREAALELLAGIL---LHILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTEST 949 (1801)
Q Consensus 876 ---~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~---~~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~ 949 (1801)
+.|-+-|-.-+.|.-..=|=+|+..||-+. .++...|.+.|..-+.|..=-||-.++-.|-.+-..+| +..
T Consensus 140 ~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np---klR 216 (253)
T 2db0_A 140 MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND---KLR 216 (253)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH---HHH
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH---HHH
Confidence 234444555666777788889999999832 23788899999999999999999999999999987664 466
Q ss_pred HHHHHhhcccCCCchhHHHHHHHHHHhhccCC
Q 047845 950 TACIEIISRVNDDESSIQDLVCKTFYEFWFEE 981 (1801)
Q Consensus 950 ~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p 981 (1801)
.+....+.+.+|.-+-|++-|++-+..+-...
T Consensus 217 kii~~kl~e~~D~S~lv~~~V~egL~rl~l~e 248 (253)
T 2db0_A 217 KVVIKRLEELNDTSSLVNKTVKEGISRLLLLE 248 (253)
T ss_dssp HHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 67788899999999899999999888776543
No 73
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=76.64 E-value=14 Score=47.44 Aligned_cols=142 Identities=10% Similarity=0.103 Sum_probs=97.9
Q ss_pred HHHHHHHHhc-CCChhHHhHHHHHHHHHHhcCc-------cccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---
Q 047845 839 ILHLLLVSLR-ENSPIIRAKALRAVSIIVEVDP-------EVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH--- 907 (1801)
Q Consensus 839 iL~~LL~~L~-~~s~~vRSKALK~Ls~ive~DP-------sIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--- 907 (1801)
.+..++..|. ...+.++..|..+|..+..-+. .++.....-..+..-|...+..|+.+|+.+|+.+...
T Consensus 309 ~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~ 388 (584)
T 3l6x_A 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARN 388 (584)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhH
Confidence 4566666664 4578999999999999975441 1333334444555567788899999999999995432
Q ss_pred ---HHHHHHHHHHHHhCCC--------ChhhhHHHHHHHHHHhhhCCCCcchH-HH-H-HHhhcccCC--CchhHHHHHH
Q 047845 908 ---ILMLYFVKVAERIKDT--------GVSVRKRAIKIIRDMCTSNTNFTEST-TA-C-IEIISRVND--DESSIQDLVC 971 (1801)
Q Consensus 908 ---L~~~yy~~I~eRi~D~--------GVsVRKRvIKilkdIy~~~p~~~~~~-~i-~-~~iL~Rv~D--EEdsIkdLa~ 971 (1801)
+.....+.++..+... ...|+.-|++.|..|+..+++..+.. +. + .+++.=..+ ..+.|++.|.
T Consensus 389 ~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa 468 (584)
T 3l6x_A 389 KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468 (584)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHH
Confidence 6667888888888765 34678999999999997776633222 11 1 222222222 3569999999
Q ss_pred HHHHhhccC
Q 047845 972 KTFYEFWFE 980 (1801)
Q Consensus 972 ~tf~elWF~ 980 (1801)
.++..||=.
T Consensus 469 ~vL~nl~~~ 477 (584)
T 3l6x_A 469 LVLQTIWGY 477 (584)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHcC
Confidence 999999953
No 74
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=74.58 E-value=2.3 Score=55.66 Aligned_cols=60 Identities=27% Similarity=0.396 Sum_probs=50.3
Q ss_pred HHHhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 047845 844 LVSLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSAISVREAALELLAGI 904 (1801)
Q Consensus 844 L~~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI 904 (1801)
|.-|.++.+..|..|.-+|+.|++ ||+ ++....|...|...+.|++..||++|.+.++.+
T Consensus 40 l~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL 103 (684)
T 4gmo_A 40 LKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVL 103 (684)
T ss_dssp HHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 345788999999999999999997 765 334556777888889999999999999999873
No 75
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=74.16 E-value=10 Score=50.39 Aligned_cols=138 Identities=15% Similarity=0.102 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc---ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH--H-----H
Q 047845 839 ILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE---VLCDKRVQLAVEGRFCDSAISVREAALELLAGILL--H-----I 908 (1801)
Q Consensus 839 iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs---IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~--~-----L 908 (1801)
.+..|...|.++.+.||..|..+|+.|+.-++. +.....+-..+..-+......||.+|...|+.+.. . +
T Consensus 624 ~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~i 703 (810)
T 3now_A 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI 703 (810)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 456667777788999999999999999864331 11111222233334445578999999999999543 1 3
Q ss_pred H--HHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHH----HHHhhcccC---C-CchhHHHHHHHHHHhhc
Q 047845 909 L--MLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTA----CIEIISRVN---D-DESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 909 ~--~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i----~~~iL~Rv~---D-EEdsIkdLa~~tf~elW 978 (1801)
. ....+.|++-+......||++++..+..+....++ ....+ +...|.++. | .+..|.+.|.+.|+.+-
T Consensus 704 i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e--~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 704 LAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE--IAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp HTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH--HHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH--HHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 3 35888999999999999999999999998764433 22222 233444432 2 34578888888877664
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=72.88 E-value=33 Score=38.95 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchh---HHHHHHhhcCCCChhHHHHHHHHHHH--HHHHHHH
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKR---VQLAVEGRFCDSAISVREAALELLAG--ILLHILM 910 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~---Vq~~I~~rl~DsS~sVRDAAldLIGk--I~~~L~~ 910 (1801)
.+..|..|+..+.++-=+|==||+|||..+++--| |.... +-.++..-.....+..|+=|.|.+|+ +.. +..
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp--L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~-~~~ 149 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVP--MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLE-DSK 149 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-CCH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCccc-chH
Confidence 35555666666677777777889999999998776 44332 56677777779999999999999999 332 223
Q ss_pred HHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhccCCCC
Q 047845 911 LYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWFEEPS 983 (1801)
Q Consensus 911 ~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF~p~~ 983 (1801)
+...-|..-+.-+-..|.=-+++.+.+|-..+.|-+....+...|=.=++-|+.-|++.|...++++.=.|..
T Consensus 150 ~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 150 LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc
Confidence 3333333334555566777889999999887766444444432211111233556999999999999877765
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=72.41 E-value=28 Score=41.87 Aligned_cols=133 Identities=15% Similarity=0.110 Sum_probs=85.0
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 047845 841 HLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-ILMLYFVKVAER 919 (1801)
Q Consensus 841 ~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-L~~~yy~~I~eR 919 (1801)
-.+++.+.++-..+|-=.-=.+-.+....+.++ .|-..+.+=+.|+.+.||=.|+-.+|+|... +.+...+.|-..
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~ 147 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQA 147 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 344556666666555433333333333322222 2445555667799999999999999996554 888999999999
Q ss_pred hCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhc
Q 047845 920 IKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 920 i~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
+.|....|||.|+=..-.+|...|+. .......+-.-+.|...+|.--|...+.++.
T Consensus 148 L~d~~pyVRk~A~l~~~kL~~~~pe~--v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 148 IVDKVPSVSSSALVSSLHLLKCSFDV--VKRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp HTCSSHHHHHHHHHHHHHHTTTCHHH--HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 99999999999998877777665551 1111222223345555566655555555554
No 78
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=70.67 E-value=7 Score=48.38 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=70.5
Q ss_pred CChhHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchh
Q 047845 889 SAISVREAALELLAGILLH---ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESS 965 (1801)
Q Consensus 889 sS~sVRDAAldLIGkI~~~---L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEds 965 (1801)
.++.++.-|=.+|.|...+ |.++-++.+.+-+-|.-+.|||-|||=|-.+|-. ...+++.++...||. -||..
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kiaDvL~QlLq---tdd~~ 115 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVADILTQLLQ---TDDSA 115 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHHHHHHHHTT---CCCHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHHh---ccchH
Confidence 3577888888999994443 9999999999999999999999999999999966 333556666666665 34457
Q ss_pred HHHHHHHHHHhhccC
Q 047845 966 IQDLVCKTFYEFWFE 980 (1801)
Q Consensus 966 IkdLa~~tf~elWF~ 980 (1801)
-.+.|.+.|.++|=.
T Consensus 116 E~~~V~~sL~sllk~ 130 (507)
T 3u0r_A 116 EFNLVNNALLSIFKM 130 (507)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999999854
No 79
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=70.51 E-value=24 Score=47.76 Aligned_cols=107 Identities=10% Similarity=0.005 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhc------CCChhHHhHHHHHHHHHHhcC--cc--------ccC-chhHHHHHHhhcCCC---ChhHH
Q 047845 835 GFDKILHLLLVSLR------ENSPIIRAKALRAVSIIVEVD--PE--------VLC-DKRVQLAVEGRFCDS---AISVR 894 (1801)
Q Consensus 835 sFd~iL~~LL~~L~------~~s~~vRSKALK~Ls~ive~D--Ps--------IL~-~~~Vq~~I~~rl~Ds---S~sVR 894 (1801)
.++.++..+...+. .+....|--|+-+++.|.+.- +. .+. .+.+...|...+.|+ .|-||
T Consensus 396 v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr 475 (960)
T 1wa5_C 396 VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILR 475 (960)
T ss_dssp HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceeh
Confidence 34555555555554 344577888999999997631 11 011 122334455567787 99999
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhh
Q 047845 895 EAALELLAGILL----HILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTS 941 (1801)
Q Consensus 895 DAAldLIGkI~~----~L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~ 941 (1801)
.+|...||++.. ......++.|..++.|...-||-+|..-++.+|..
T Consensus 476 ~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 476 VDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 999999999432 26677788888999999999999999999998863
No 80
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=69.91 E-value=1.8 Score=40.14 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=35.0
Q ss_pred cccc-cccccccc-hhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 661 DLCC-VCLDGRVE-KRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~-~~l~~~~~-~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
...| .|....-+ .||.|+ +|.++||..|++......+...|.|..|..
T Consensus 18 ~~~C~~C~~~~~~~~mi~CD-~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 18 IWICPGCNKPDDGSPMIGCD-DCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp EECBTTTTBCCSSCCEEECS-SSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred CcCCCCCCCCCCCCCEEEcC-CCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3456 56654323 566665 999999999999876665556899999975
No 81
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=69.88 E-value=2.2e+02 Score=39.63 Aligned_cols=123 Identities=7% Similarity=-0.022 Sum_probs=69.3
Q ss_pred ChhHHhHHHHHHHHHHhcCc-ccc-Cc-hhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-------------HHHHHHH
Q 047845 851 SPIIRAKALRAVSIIVEVDP-EVL-CD-KRVQLAVEGRFCDSAISVREAALELLAGILLH-------------ILMLYFV 914 (1801)
Q Consensus 851 s~~vRSKALK~Ls~ive~DP-sIL-~~-~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-------------L~~~yy~ 914 (1801)
.+.++..||+|+...++--| +.. .. ..+...+-..+. .+.+|++|++-|..|..+ +...+..
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~ 297 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH 297 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence 45689999999987766433 332 22 123333333333 378999999999984321 1122222
Q ss_pred HHHHHh--------CCCChhhhHHHHHHHHHHh-------hhC---CCCcchHHHHHHhhcccCCCchhHHHHHHHHHHh
Q 047845 915 KVAERI--------KDTGVSVRKRAIKIIRDMC-------TSN---TNFTESTTACIEIISRVNDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 915 ~I~eRi--------~D~GVsVRKRvIKilkdIy-------~~~---p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~e 976 (1801)
.+.... .|....++|++.+++-.+. .+. +.-+....+..-|+.-..++++.|..++.+
T Consensus 298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~---- 373 (1204)
T 3a6p_A 298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQM---- 373 (1204)
T ss_dssp HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHH----
T ss_pred HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHH----
Confidence 344443 3334679999999887754 211 111223344444555556677666666555
Q ss_pred hcc
Q 047845 977 FWF 979 (1801)
Q Consensus 977 lWF 979 (1801)
+|.
T Consensus 374 fW~ 376 (1204)
T 3a6p_A 374 TWG 376 (1204)
T ss_dssp HHH
T ss_pred HHH
Confidence 575
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=65.80 E-value=3.6e+02 Score=36.24 Aligned_cols=129 Identities=12% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcC------CCChhHHHHHHHHHHHHHHH---------------
Q 047845 849 ENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFC------DSAISVREAALELLAGILLH--------------- 907 (1801)
Q Consensus 849 ~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~------DsS~sVRDAAldLIGkI~~~--------------- 907 (1801)
++.-++|.-|..+|..+....+..+- +.+...|...+. ++....||||+=++|-|...
T Consensus 372 ~d~~s~R~aa~~~L~~l~~~~~~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~ 450 (960)
T 1wa5_C 372 SDTDTRRRACTDFLKELKEKNEVLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL 450 (960)
T ss_dssp ----CHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred ccccCcHHHHHHHHHHHHHHcchhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence 34458999999999999988774332 223333333333 34457999999999986421
Q ss_pred HHHHHH-HHHHHHhCCC---ChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhhcc
Q 047845 908 ILMLYF-VKVAERIKDT---GVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEFWF 979 (1801)
Q Consensus 908 L~~~yy-~~I~eRi~D~---GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elWF 979 (1801)
-...|+ ..+...+.|+ -.-||.|+++.+..++...+. +....+...++..+.|++--|+.-|..+|..+-.
T Consensus 451 ~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 451 NVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 122333 4566667787 788999999999988765321 2344555678888889888899999999997653
No 83
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=65.63 E-value=2.3 Score=41.79 Aligned_cols=45 Identities=22% Similarity=0.583 Sum_probs=32.9
Q ss_pred cccccccccc-chhhhhccccccccccccccccccCCCCCCcchhhhh
Q 047845 662 LCCVCLDGRV-EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCL 708 (1801)
Q Consensus 662 l~~~~l~~~~-~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~ 708 (1801)
+.|.|..... ..||.|. +|.++||..|++......+. .|.|..|.
T Consensus 29 vrCiC~~~~~~~~mi~Cd-~C~~w~H~~C~~~~~~~~p~-~w~C~~C~ 74 (98)
T 2lv9_A 29 TRCICGFTHDDGYMICCD-KCSVWQHIDCMGIDRQHIPD-TYLCERCQ 74 (98)
T ss_dssp CCCTTSCCSCSSCEEEBT-TTCBEEETTTTTCCTTSCCS-SBCCTTTS
T ss_pred EEeECCCccCCCcEEEcC-CCCCcCcCcCCCCCccCCCC-CEECCCCc
Confidence 4577765433 4455554 99999999999986655554 79999985
No 84
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.03 E-value=5 Score=38.92 Aligned_cols=45 Identities=33% Similarity=0.711 Sum_probs=33.6
Q ss_pred ccccc-ccchhhhhccccccccccccccccccCCCCCCcchhhhhhh
Q 047845 665 VCLDG-RVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCR 710 (1801)
Q Consensus 665 ~~l~~-~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~~ 710 (1801)
.|... ..+.||.|. +|.+.||..|++..-.+.|...|.|..|...
T Consensus 21 vC~~~~~~~~ll~CD-~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 21 VCSRGDEDDKLLFCD-GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp SSCCSGGGGGCEECT-TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCcCCCCCEEEcC-CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 56544 334566665 9999999999996555667779999999763
No 85
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=62.64 E-value=16 Score=48.12 Aligned_cols=126 Identities=16% Similarity=0.294 Sum_probs=78.7
Q ss_pred HhHHHHHHHHHHhcCc--------cccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---HHHHH-----------
Q 047845 855 RAKALRAVSIIVEVDP--------EVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH---ILMLY----------- 912 (1801)
Q Consensus 855 RSKALK~Ls~ive~DP--------sIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---L~~~y----------- 912 (1801)
+--|+++|+.+...+. .|+....+-..|..-+.+.+++||.||.++|..+... ...+|
T Consensus 576 ~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~r 655 (778)
T 3opb_A 576 NYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRN 655 (778)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhcc
Confidence 6689999999998862 1444334556777788899999999999999994322 11122
Q ss_pred HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC-------cchHHHHHHhhcccCCCchhHHHHHHHHHHhhc-cCC
Q 047845 913 FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF-------TESTTACIEIISRVNDDESSIQDLVCKTFYEFW-FEE 981 (1801)
Q Consensus 913 y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~-------~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~elW-F~p 981 (1801)
++.+..-+.-....+|+.|...+--+....|.. .+-.+...+|+....|. ++++-=+.-+|..|| ..|
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~-~~l~~R~~~~l~NL~~~~~ 731 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDD-IELRQRLLMLFFGLFEVIP 731 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHhhc
Confidence 456666667777888888887776654333321 01122233344333333 366666666777776 554
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=60.61 E-value=64 Score=38.54 Aligned_cols=142 Identities=11% Similarity=0.114 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc-Ccc----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH---H-
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEV-DPE----VLCDKRVQLAVEGRFCDSAISVREAALELLAGILL---H- 907 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~-DPs----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~---~- 907 (1801)
...+..|+..|.++.+.+|..|..+|..+... |+. |...-.|...|.--+...++.|++.|+..++.+.. .
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 45577888888999999999999999999764 332 22222344444311234578999999999998443 1
Q ss_pred ---H--HHHHHHHHHHHhCCCCh----hhhHHHHHHHHHHhh---hCCCCcchH-H--HHHHhhcccCCCchhHHHHHHH
Q 047845 908 ---I--LMLYFVKVAERIKDTGV----SVRKRAIKIIRDMCT---SNTNFTEST-T--ACIEIISRVNDDESSIQDLVCK 972 (1801)
Q Consensus 908 ---L--~~~yy~~I~eRi~D~GV----sVRKRvIKilkdIy~---~~p~~~~~~-~--i~~~iL~Rv~DEEdsIkdLa~~ 972 (1801)
+ .....+.|.+.+.+..- .|++.+..+|+.+.. .+++..... + +...++.-+.+.++.|++-|.-
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 2 23456777777765543 599999999999875 344421111 1 1244555566666778888888
Q ss_pred HHHhhc
Q 047845 973 TFYEFW 978 (1801)
Q Consensus 973 tf~elW 978 (1801)
++..+=
T Consensus 286 aL~nLa 291 (354)
T 3nmw_A 286 TLWNLS 291 (354)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 887774
No 87
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=58.85 E-value=25 Score=43.26 Aligned_cols=141 Identities=10% Similarity=0.103 Sum_probs=91.3
Q ss_pred HHHHHHHHhcC-CChhHHhHHHHHHHHHHhcCcc--------ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--
Q 047845 839 ILHLLLVSLRE-NSPIIRAKALRAVSIIVEVDPE--------VLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH-- 907 (1801)
Q Consensus 839 iL~~LL~~L~~-~s~~vRSKALK~Ls~ive~DPs--------IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-- 907 (1801)
.+..++..|.. ..+.++..|..+|+.+..-+.. +.....+-..+.+-+.+...-||..|+.+|+.+...
T Consensus 284 ~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~ 363 (457)
T 1xm9_A 284 AIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG
T ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH
Confidence 34555555543 4588999999999999864421 222222223445577788899999999999985422
Q ss_pred ----HHHHHHHHHHHHhCCCCh------hhhHHHHHHHHHHhhhCCCCcchH---HHHHHhhcccCCC-chhHHHHHHHH
Q 047845 908 ----ILMLYFVKVAERIKDTGV------SVRKRAIKIIRDMCTSNTNFTEST---TACIEIISRVNDD-ESSIQDLVCKT 973 (1801)
Q Consensus 908 ----L~~~yy~~I~eRi~D~GV------sVRKRvIKilkdIy~~~p~~~~~~---~i~~~iL~Rv~DE-EdsIkdLa~~t 973 (1801)
+.....+.|++-+..... .|-.-++..+..|....+++.... ....+|+.=...+ -+.|++.|..+
T Consensus 364 ~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~ 443 (457)
T 1xm9_A 364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443 (457)
T ss_dssp GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 455677888888776532 466788888888886665532211 1112333222333 45899999999
Q ss_pred HHhhcc
Q 047845 974 FYEFWF 979 (1801)
Q Consensus 974 f~elWF 979 (1801)
+..+|=
T Consensus 444 L~~~~~ 449 (457)
T 1xm9_A 444 LSDMWS 449 (457)
T ss_dssp HHTTSS
T ss_pred HHHHHc
Confidence 999994
No 88
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=57.69 E-value=79 Score=39.19 Aligned_cols=141 Identities=12% Similarity=0.122 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCCChhHHhHHHHHHHHHHhc-Ccc----ccCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH---
Q 047845 837 DKILHLLLVSLRENSPIIRAKALRAVSIIVEV-DPE----VLCDKRVQLAVEGRFC-DSAISVREAALELLAGILLH--- 907 (1801)
Q Consensus 837 d~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~-DPs----IL~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~--- 907 (1801)
...+..|+..|.++.+.+|..|.-+|..|... |+. |.....|...|. .|. ..++.|++.|+..++.+..+
T Consensus 242 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~-lLl~s~~~~v~~~A~~aL~nLs~~~~~ 320 (458)
T 3nmz_A 242 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME-CALEVKKESTLKSVLSALWNLSAHCTE 320 (458)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH-HHTTCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred CCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH-HHhcCCCHHHHHHHHHHHHHHccCCHH
Confidence 45577888888999999999999999998763 432 222223444443 333 45789999999999985431
Q ss_pred ----H--HHHHHHHHHHHhCCCCh----hhhHHHHHHHHHHhh---hCCCCcchH-H--HHHHhhcccCCCchhHHHHHH
Q 047845 908 ----I--LMLYFVKVAERIKDTGV----SVRKRAIKIIRDMCT---SNTNFTEST-T--ACIEIISRVNDDESSIQDLVC 971 (1801)
Q Consensus 908 ----L--~~~yy~~I~eRi~D~GV----sVRKRvIKilkdIy~---~~p~~~~~~-~--i~~~iL~Rv~DEEdsIkdLa~ 971 (1801)
+ .....+.|.+.+....- .|++.+..+|+.+.. .+++..... + +...++.-+.+.+..|++-|.
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~ 400 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC 400 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHH
Confidence 2 12356666677665543 499999999999875 444422111 1 123455556666667888888
Q ss_pred HHHHhhc
Q 047845 972 KTFYEFW 978 (1801)
Q Consensus 972 ~tf~elW 978 (1801)
-++..+-
T Consensus 401 ~aL~nLa 407 (458)
T 3nmz_A 401 GTLWNLS 407 (458)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=57.35 E-value=3 Score=35.75 Aligned_cols=36 Identities=33% Similarity=0.758 Sum_probs=28.3
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCL 708 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~ 708 (1801)
+.|+.|+ +|.+.||.+|+.....+.|...|.|..|.
T Consensus 13 ~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 13 DKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQ 48 (51)
T ss_dssp SCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTS
T ss_pred CCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCcc
Confidence 4566666 99999999999765555676789998885
No 90
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=56.18 E-value=1.4e+02 Score=33.97 Aligned_cols=142 Identities=14% Similarity=0.195 Sum_probs=94.7
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHhhhcccccC
Q 047845 1239 NLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLA--DSSHIRLKMQALQNLYEYLLDAENQMETDKG 1316 (1801)
Q Consensus 1239 ~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~--~~~~~~lK~~vL~nl~eFL~~eE~r~~~~~~ 1316 (1801)
.++..++...|..++..||.+|+.+.-..|+-+.+..+..+|+.+.. .+.+.++.+.+++.|...|...
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v--------- 106 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV--------- 106 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------
Confidence 34444555678899999999999999999999999999999998763 2335566666777776654200
Q ss_pred CCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHhcCccCC-Ccccceeeecc
Q 047845 1317 SGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVVLRQGLVHP-ITCVPYLIALE 1395 (1801)
Q Consensus 1317 ~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~ilrQGLVhP-~~cvPtLIALe 1395 (1801)
|... .---+-.+.+...-.+.++-++.-|.+.++.+ --+.| ...+-.+..|.
T Consensus 107 ---------------pL~~---------~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---kv~~~~~~V~~~l~sLl 159 (265)
T 3b2a_A 107 ---------------PMGS---------KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---QPLEDSKLVRTYINELV 159 (265)
T ss_dssp ---------------CBCH---------HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---CBSCCCHHHHHHHHHHH
T ss_pred ---------------CCCH---------HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---CcccchHHHHHHHHHHH
Confidence 0010 11112223334444578888888888888877 23333 22345566677
Q ss_pred cCcchhhHHHHHHHHHHHHhh
Q 047845 1396 TDPQEVNSKLAHHLLMNMNEK 1416 (1801)
Q Consensus 1396 Tdp~~~Ir~~A~~lL~~L~eK 1416 (1801)
.|+++.+...|...+.++..+
T Consensus 160 ~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 160 VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp TCSSHHHHHHHHHHHHHHGGG
T ss_pred hCCChhHHHHHHHHHHHhhcc
Confidence 888888888888888877553
No 91
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=54.58 E-value=7.9 Score=35.30 Aligned_cols=50 Identities=18% Similarity=0.435 Sum_probs=33.6
Q ss_pred cccccccccc-cchhhhhcc-ccccccccccccccccCCC----CCCcchhhhhhh
Q 047845 661 DLCCVCLDGR-VEKRVFMCQ-GCQRLFHADCLGVREHEVP----NRGWNCQLCLCR 710 (1801)
Q Consensus 661 ~l~~~~l~~~-~~~lv~~~~-g~~r~~~~~~l~~~~~e~~----~~~w~~~~c~~~ 710 (1801)
.+.|.|.... -..||.|.. .|..|||..|+++...... ...|.|..|..+
T Consensus 10 ~v~C~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~ 65 (68)
T 2rsd_A 10 KVRCICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLS 65 (68)
T ss_dssp EECCTTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHH
T ss_pred CEEeECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCc
Confidence 4668886543 345666652 4999999999998543311 126999999764
No 92
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=54.14 E-value=66 Score=38.40 Aligned_cols=140 Identities=8% Similarity=0.025 Sum_probs=89.2
Q ss_pred HHHHHHh-cCCChhHHhHHHHHHHHHHhcC----ccccCchhHHHHHHhhcCCCCh----hHHHHHHHHHHHHHH-----
Q 047845 841 HLLLVSL-RENSPIIRAKALRAVSIIVEVD----PEVLCDKRVQLAVEGRFCDSAI----SVREAALELLAGILL----- 906 (1801)
Q Consensus 841 ~~LL~~L-~~~s~~vRSKALK~Ls~ive~D----PsIL~~~~Vq~~I~~rl~DsS~----sVRDAAldLIGkI~~----- 906 (1801)
..|+..| ......++..|+.+|..+...+ +.|.........+-..+.+.+. .|++.|...+..+..
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 3344432 3456788888888988887633 2333122223333345554444 488888888777442
Q ss_pred H------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcc-hHHH-H-HHhhcccCCCchhHHHHHHHHHHhh
Q 047845 907 H------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTE-STTA-C-IEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 907 ~------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~-~~~i-~-~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
. ......+.|.+.+.+....|+|.+...|..++..+++... +.+. + ..++.-+.+.++.|++-|..++..+
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 2234688899999999999999999999999865544211 1111 2 2344444566778999999999988
Q ss_pred ccC
Q 047845 978 WFE 980 (1801)
Q Consensus 978 WF~ 980 (1801)
-..
T Consensus 333 ~~~ 335 (354)
T 3nmw_A 333 MAN 335 (354)
T ss_dssp HTT
T ss_pred HcC
Confidence 764
No 93
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=53.58 E-value=4.8 Score=36.52 Aligned_cols=37 Identities=35% Similarity=0.816 Sum_probs=29.6
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
.+|+.|+ +|.+.||..|++....+.+...|.|..|..
T Consensus 18 g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 18 GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccC
Confidence 4677766 999999999999654556667899999975
No 94
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=52.26 E-value=5.5 Score=38.52 Aligned_cols=45 Identities=24% Similarity=0.648 Sum_probs=32.1
Q ss_pred cccccccccccchhhhhccccc---cccccccccccccCCCCCCcchhh-hh
Q 047845 661 DLCCVCLDGRVEKRVFMCQGCQ---RLFHADCLGVREHEVPNRGWNCQL-CL 708 (1801)
Q Consensus 661 ~l~~~~l~~~~~~lv~~~~g~~---r~~~~~~l~~~~~e~~~~~w~~~~-c~ 708 (1801)
.+.|.|....-..||.|+ +|. .|||..|+++... +...|.|.. |.
T Consensus 26 ~~yCiC~~~~~g~MI~CD-~c~C~~eWfH~~CVgl~~~--p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 26 EVYCFCRNVSYGPMVACD-NPACPFEWFHYGCVGLKQA--PKGKWYCSKDCK 74 (90)
T ss_dssp SCCSTTTCCCSSSEECCC-SSSCSCSCEETTTSSCSSC--TTSCCCSSHHHH
T ss_pred CcEEEeCCCCCCCEEEec-CCCCccccCcCccCCCCcC--CCCCccCChhhc
Confidence 456777654335677766 755 8999999997543 445899999 85
No 95
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=52.15 E-value=77 Score=33.29 Aligned_cols=91 Identities=9% Similarity=0.027 Sum_probs=63.8
Q ss_pred HHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCC------CCh
Q 047845 861 AVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH---------ILMLYFVKVAERIKD------TGV 925 (1801)
Q Consensus 861 ~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~---------L~~~yy~~I~eRi~D------~GV 925 (1801)
-|.-+|..+|. ...+..++|.+|+....|.|==.||.|+.-+..+ -..+|.+.+...+.+ +..
T Consensus 34 eicD~I~~~~~--~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~ 111 (149)
T 3g2s_A 34 GFCEQLNEDFE--GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSE 111 (149)
T ss_dssp HHHHHGGGSSS--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCH
T ss_pred HHHHHHHCCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCH
Confidence 34445555552 2345677888899988888888888888873322 234677777777765 567
Q ss_pred hhhHHHHHHHHHHhhhCCCCcchHHHHH
Q 047845 926 SVRKRAIKIIRDMCTSNTNFTESTTACI 953 (1801)
Q Consensus 926 sVRKRvIKilkdIy~~~p~~~~~~~i~~ 953 (1801)
.||+|++.++..-....++.+.+.++..
T Consensus 112 ~Vk~kil~li~~W~~~f~~~p~i~~~Y~ 139 (149)
T 3g2s_A 112 KVKNKILELLYSWTVGLPEEVKIAEAYQ 139 (149)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 8999999999999988877665444443
No 96
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=51.67 E-value=5.1 Score=35.74 Aligned_cols=46 Identities=24% Similarity=0.610 Sum_probs=31.8
Q ss_pred cccccccccccchhhhhccc--cc-cccccccccccccCCCCCCcchhhhhh
Q 047845 661 DLCCVCLDGRVEKRVFMCQG--CQ-RLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~~~~lv~~~~g--~~-r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
...|.|.+..-..|+.|. + |. ++||..|++... .+...|.|..|..
T Consensus 10 ~~~C~C~~~~~g~mi~CD-~cdC~~~wfH~~Cvgl~~--~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYCLCHQVSYGEMIGCD-NPDCSIEWFHFACVGLTT--KPRGKWFCPRCSQ 58 (60)
T ss_dssp CEETTTTEECCSEEEECS-CTTCSSCEEETGGGTCSS--CCSSCCCCHHHHC
T ss_pred CCEEECCCcCCCCEEEeC-CCCCCCceEehhcCCCCc--CCCCCEECcCccC
Confidence 356667654335677666 7 65 899999999654 3446899998864
No 97
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=50.95 E-value=5.9 Score=35.39 Aligned_cols=37 Identities=30% Similarity=0.732 Sum_probs=29.5
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
.+|+.|. +|.+.||.+|++..-.+.+...|.|..|..
T Consensus 19 g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 19 GELLCCD-TCPSSYHIHCLNPPLPEIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCBCCS-SSCCCBCSSSSSSCCSSCCSSCCCCTTTTT
T ss_pred CCEEEcC-CCCHHHcccccCCCcCcCCCCccCChhhcC
Confidence 4577666 999999999999655556667899999865
No 98
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=50.77 E-value=4.2 Score=37.07 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=29.9
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
.+|+.|+ +|.+.||.+|+...-.+.+...|.|..|..
T Consensus 22 ~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 22 TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CeEEECC-CCCCceecccCCCccCcCCCCCEECccccC
Confidence 4567665 999999999998666667778999999864
No 99
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=50.26 E-value=82 Score=35.69 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=100.0
Q ss_pred hhhhHHHHHHHhhcCChHHHHHHHHHHHHHHhcCcchhchhhHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhhhccc
Q 047845 1234 IVSNLNLFKRYLRMEDFSVKVRSLQALGFVLIARPEHMLEKDIGKILEATLADSSHIRLKMQALQNLYEYLLDAENQMET 1313 (1801)
Q Consensus 1234 v~~~l~lf~~~~~~~d~~iR~~AL~aLG~lc~s~P~l~~~~~v~~i~~~~l~~~~~~~lK~~vL~nl~eFL~~eE~r~~~ 1313 (1801)
.+.++.+|.......-.++|.-|...||.+ . ..+++...+...|..+..=.++-.+=.-+.+++...
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~------ 135 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI------ 135 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc------
Confidence 456777887766666679999999999988 2 235677778776665544333322222222222100
Q ss_pred ccCCCCcccccccCCccccccccCCCcchHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH--HhcCccCCCccccee
Q 047845 1314 DKGSGNEVEYTVEDGHSVPVAAGAGDTNICGGIIQLYWDKILGRCLDANEEVRQTALKIVEVV--LRQGLVHPITCVPYL 1391 (1801)
Q Consensus 1314 ~~~~~~~~~~~~~~~k~~~v~~g~~Dsgv~s~ivQrYL~~IL~~~ls~~~~vr~~Al~vl~~i--lrQGLVhP~~cvPtL 1391 (1801)
+ .+ +-++.+.+-+.+.+..||.+|++.+..- ...=-.+|...+|.|
T Consensus 136 ----------------------~-pe---------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL 183 (240)
T 3l9t_A 136 ----------------------E-YK---------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRI 183 (240)
T ss_dssp ----------------------C-TT---------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHH
T ss_pred ----------------------C-HH---------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHH
Confidence 0 00 1245567889999999999999886320 011247888889999
Q ss_pred eecccCcchhhHHHHHHHHHHHHhhChhhhhh
Q 047845 1392 IALETDPQEVNSKLAHHLLMNMNEKYPAFFES 1423 (1801)
Q Consensus 1392 IALeTdp~~~Ir~~A~~lL~~L~eKyes~v~~ 1423 (1801)
-.|-.|+..+|++-.---|+++-+++|..|-.
T Consensus 184 ~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 184 ADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp HTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 99999999999999999999999999997763
No 100
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=50.03 E-value=4.4 Score=36.19 Aligned_cols=37 Identities=24% Similarity=0.633 Sum_probs=30.1
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
.+|+.|. +|.+.||..|++....+.+...|.|..|..
T Consensus 21 g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 21 GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CcEEECC-CCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4677766 999999999999865566777999999864
No 101
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=49.95 E-value=78 Score=39.24 Aligned_cols=139 Identities=8% Similarity=0.023 Sum_probs=88.3
Q ss_pred HHHHHHh-cCCChhHHhHHHHHHHHHHhcC----ccccCchhHHHHHHhhcCCCCh----hHHHHHHHHHHHHHH-----
Q 047845 841 HLLLVSL-RENSPIIRAKALRAVSIIVEVD----PEVLCDKRVQLAVEGRFCDSAI----SVREAALELLAGILL----- 906 (1801)
Q Consensus 841 ~~LL~~L-~~~s~~vRSKALK~Ls~ive~D----PsIL~~~~Vq~~I~~rl~DsS~----sVRDAAldLIGkI~~----- 906 (1801)
..|+..| ....+.++..|+.+|..|..-. +.|.........+...+...+. .|++.|...|..+..
T Consensus 289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 368 (458)
T 3nmz_A 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368 (458)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence 3444432 4456788888888888887622 2333222233333345554444 388888887776442
Q ss_pred H------HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcc-hHHH-H-HHhhcccCCCchhHHHHHHHHHHhh
Q 047845 907 H------ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTE-STTA-C-IEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 907 ~------L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~-~~~i-~-~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
. ......+.|.+.+.+....|+|.+...+..++..+++... +.+. + ..++.-+...++.|++-|..+|..+
T Consensus 369 ~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 448 (458)
T ss_dssp HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 2334688899999999999999999999999866554221 1121 2 2234444556678999999999888
Q ss_pred cc
Q 047845 978 WF 979 (1801)
Q Consensus 978 WF 979 (1801)
--
T Consensus 449 ~~ 450 (458)
T 3nmz_A 449 MA 450 (458)
T ss_dssp HT
T ss_pred Hc
Confidence 64
No 102
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=49.94 E-value=8 Score=35.38 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=33.6
Q ss_pred cccccccccccc-hhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 661 DLCCVCLDGRVE-KRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~~~-~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
.+.|.|...... .||.|. +|..|||..|+++...+.+ ..|.|..|.-
T Consensus 19 ~~~CiC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~-~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTCFCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVP-EVFVCQKCRD 66 (68)
T ss_dssp CCCSTTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCC-SSCCCHHHHT
T ss_pred ceEeECCCcCCCCCEEECC-CCCccccccccCcCcccCC-CcEECCCCCC
Confidence 456777654334 356555 8999999999998765544 4799988853
No 103
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.39 E-value=10 Score=34.87 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=34.5
Q ss_pred cccccccccc-cc-hhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 661 DLCCVCLDGR-VE-KRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~-~~-~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
.+.|.|.... .. .||.|. .|..|||..|+++...+.....|.|..|..
T Consensus 16 ~~~C~C~~~~~~g~~mI~Cd-~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 16 KVDCKCGTKDDDGERMLACD-GCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp EECCTTCCCSCCSSCEEECS-SSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred ceEeeCCCccCCCCcEEECC-CCCCccCCeeeccCccccCCCcEECCCccC
Confidence 4667776542 23 466665 999999999999875443346899999865
No 104
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=49.05 E-value=85 Score=38.48 Aligned_cols=102 Identities=10% Similarity=0.048 Sum_probs=75.4
Q ss_pred HHHHHHhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH---H-----H
Q 047845 841 HLLLVSLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSAISVREAALELLAGILL---H-----I 908 (1801)
Q Consensus 841 ~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~---~-----L 908 (1801)
..++..|.++.+.+|..|..+|..+...++. |.....|...| +.|..+++.|++.|+..++.+.. . .
T Consensus 5 ~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv-~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLV-DLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHH-HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4566777788899999999999999866653 22222344444 46777889999999999999542 2 2
Q ss_pred HHHHHHHHHHHhC-CCChhhhHHHHHHHHHHhhhCCC
Q 047845 909 LMLYFVKVAERIK-DTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 909 ~~~yy~~I~eRi~-D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
.....+.+.+.+. .....||+.+...|..++.. ++
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~ 119 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE 119 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH
Confidence 3345778888888 56789999999999999865 44
No 105
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=48.98 E-value=26 Score=38.26 Aligned_cols=66 Identities=18% Similarity=0.260 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGI 904 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI 904 (1801)
--++|-.|...|.+.---||+-|+-.|..+.++.|. -++.|...+ .+|.|.|..|-..+.+=+||+
T Consensus 179 v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk--lRkii~~kl-~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 179 VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDK--LRKVVIKRL-EELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--HHHHHHHHH-HHCCCSCHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--HHHHHHHHH-HHhcCcHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999887 345555444 388999999999999999993
No 106
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=48.32 E-value=6.8 Score=34.74 Aligned_cols=37 Identities=27% Similarity=0.670 Sum_probs=29.4
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
..|+.|. +|.+.||..|++..-...|...|.|..|..
T Consensus 15 g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 15 GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 4667666 999999999999654456667899999975
No 107
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=47.97 E-value=6 Score=35.18 Aligned_cols=46 Identities=22% Similarity=0.608 Sum_probs=31.6
Q ss_pred cccccccccccchhhhhccc--cc-cccccccccccccCCCCCCcchhhhhh
Q 047845 661 DLCCVCLDGRVEKRVFMCQG--CQ-RLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~~~~lv~~~~g--~~-r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
...|.|.+..-..|+.|+ + |. .+||..|++.... +...|.|..|..
T Consensus 9 ~~yC~C~~~~~g~mi~CD-~~~C~~~wfH~~Cvgl~~~--p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYCLCHQVSYGEMIGCD-NPDCPIEWFHFACVDLTTK--PKGKWFCPRCVQ 57 (59)
T ss_dssp CEETTTTEECCSEEEECS-CTTCSSCEEETGGGTCSSC--CSSCCCCHHHHC
T ss_pred CcEEECCCCCCCCeeEee-CCCCCCCCEecccCCcccC--CCCCEECcCccC
Confidence 345666653335577666 7 76 6999999997543 445899998854
No 108
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=47.68 E-value=34 Score=39.28 Aligned_cols=68 Identities=12% Similarity=0.213 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+.++|++.|.+=..|..+-|||-++..+.+.|.+.++ -...+..-+..=++|++..|.+-|.+++..+
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~--l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE--LLPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7799999999999999999999999999999977655 2233322222223488889999888876554
No 109
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.00 E-value=7.1 Score=34.17 Aligned_cols=36 Identities=28% Similarity=0.718 Sum_probs=28.4
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCL 708 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~ 708 (1801)
..|+.|. +|.+.||..|++..-.+.+...|.|..|.
T Consensus 19 g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 19 GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhh
Confidence 4677666 99999999999965445666789999885
No 110
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=46.33 E-value=6.3 Score=35.44 Aligned_cols=46 Identities=22% Similarity=0.577 Sum_probs=32.0
Q ss_pred cccccccccccchhhhhccc--cc-cccccccccccccCCCCCCcchhhhhh
Q 047845 661 DLCCVCLDGRVEKRVFMCQG--CQ-RLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~~~~lv~~~~g--~~-r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
...|.|.+..-..|+.|+ + |. ++||..|++.... +...|.|..|..
T Consensus 11 ~~yC~C~~~~~g~MI~CD-~c~C~~~WfH~~Cvgl~~~--p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYCLCNQVSYGEMIGCD-NEQCPIEWFHFSCVSLTYK--PKGKWYCPKCRG 59 (62)
T ss_dssp CEETTTTEECCSEEEECS-CTTCSSCEEETGGGTCSSC--CSSCCCCHHHHT
T ss_pred CcEEECCCCCCCCeeeee-CCCCCcccEecccCCcCcC--CCCCEECcCccc
Confidence 356777653334567665 7 54 9999999997543 446899998864
No 111
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=45.80 E-value=11 Score=34.67 Aligned_cols=46 Identities=24% Similarity=0.610 Sum_probs=32.5
Q ss_pred cccccccccccchhhhhccc--cc-cccccccccccccCCCCCCcchhhhhh
Q 047845 661 DLCCVCLDGRVEKRVFMCQG--CQ-RLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~~~~lv~~~~g--~~-r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
...|.|....-..||.|. + |. .+||..|++... .+...|.|..|..
T Consensus 16 ~~~C~C~~~~~g~MI~CD-~~~C~~~wfH~~Cvgl~~--~p~g~w~Cp~C~~ 64 (71)
T 1wen_A 16 PTYCLCHQVSYGEMIGCD-NPDCSIEWFHFACVGLTT--KPRGKWFCPRCSQ 64 (71)
T ss_dssp CCCSTTCCCSCSSEECCS-CSSCSCCCEETTTTTCSS--CCSSCCCCTTTSS
T ss_pred CCEEECCCCCCCCEeEee-CCCCCCccEecccCCcCc--CCCCCEECCCCCc
Confidence 456777654335677666 6 77 699999999754 3446899998864
No 112
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=45.62 E-value=98 Score=33.21 Aligned_cols=90 Identities=8% Similarity=0.071 Sum_probs=60.9
Q ss_pred HHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHhCC------CCh
Q 047845 861 AVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH--------I-LMLYFVKVAERIKD------TGV 925 (1801)
Q Consensus 861 ~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L-~~~yy~~I~eRi~D------~GV 925 (1801)
.|.-+|..++. ....+.++|.+|+....+.|.=-||.|+--+..+ + ..+|.+.+...+.. +..
T Consensus 36 eicD~I~~~~~--~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 113 (171)
T 1juq_A 36 GFCDQINKELE--GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSE 113 (171)
T ss_dssp HHHHHHHHSTT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCH
T ss_pred HHHHHHHcCCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCH
Confidence 34444444442 2345667888899988899999999998773322 2 23466666666653 457
Q ss_pred hhhHHHHHHHHHHhhhCCCCcchHHHH
Q 047845 926 SVRKRAIKIIRDMCTSNTNFTESTTAC 952 (1801)
Q Consensus 926 sVRKRvIKilkdIy~~~p~~~~~~~i~ 952 (1801)
.||+|++.++..-....++.+.+.++.
T Consensus 114 ~Vk~kil~li~~W~~~f~~~~~i~~~y 140 (171)
T 1juq_A 114 KVKTKVIELLYSWTMALPEEAKIKDAY 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 899999999999988877655444333
No 113
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=44.46 E-value=6.9 Score=37.61 Aligned_cols=46 Identities=33% Similarity=0.865 Sum_probs=34.0
Q ss_pred cccccccc---ccchhhhhccccccccccccccccccCCCCCCcchhhhhhh
Q 047845 662 LCCVCLDG---RVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCR 710 (1801)
Q Consensus 662 l~~~~l~~---~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~~ 710 (1801)
..+.|.++ ..+.|+.|+ +|.++||..|++... .|...|.|..|...
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD-~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCD-MCNLAVHQECYGVPY--IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECS-SSCCCCCHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECC-CCCchhhcccCCCCc--cCCCceECccccCc
Confidence 34456643 345677776 999999999999753 56668999999763
No 114
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=44.22 E-value=8.2 Score=35.64 Aligned_cols=37 Identities=30% Similarity=0.695 Sum_probs=29.4
Q ss_pred cchhhhhccccccccccccccccccCCCCCCcchhhhhhh
Q 047845 671 VEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCR 710 (1801)
Q Consensus 671 ~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~~ 710 (1801)
.+.|+.|+ +|.+.||..|++... .|...|.|..|...
T Consensus 30 ~~~ll~CD-~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 30 SNVILFCD-MCNLAVHQECYGVPY--IPEGQWLCRHCLQS 66 (71)
T ss_dssp SSCEEECS-SSCCEEEHHHHTCSS--CCSSCCCCHHHHHH
T ss_pred CCCEEECC-CCCCccccccCCCCc--CCCCCcCCccCcCc
Confidence 35667666 999999999999763 56668999999764
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=44.06 E-value=5.4 Score=39.63 Aligned_cols=39 Identities=31% Similarity=0.804 Sum_probs=29.5
Q ss_pred chhhhhccccccccccccccccccC------CCCCCcchhhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHE------VPNRGWNCQLCLCR 710 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e------~~~~~w~~~~c~~~ 710 (1801)
..++.|+++|.+|||..|+++.... .+...|.|..|...
T Consensus 17 ~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 17 QDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp SCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 4577776799999999999986422 23457999999763
No 116
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=43.62 E-value=37 Score=43.71 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc-----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH-----
Q 047845 838 KILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE-----VLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH----- 907 (1801)
Q Consensus 838 ~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs-----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~----- 907 (1801)
..+..|+..|.++.-.+|=-|+++|..++...|. ||..|.-...+-.-|.|+.--||..|+-|+..+...
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 3467889999999999999999999999999887 676554333444578899999999999999995432
Q ss_pred --HHH-HHHHHHHHHhCCCCh----hhhHHHHHHHHHHhhhCC
Q 047845 908 --ILM-LYFVKVAERIKDTGV----SVRKRAIKIIRDMCTSNT 943 (1801)
Q Consensus 908 --L~~-~yy~~I~eRi~D~GV----sVRKRvIKilkdIy~~~p 943 (1801)
++- .-|+.|..=|...|. -|=-+++.++..+...|+
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 222 357777777777665 566788999999887665
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=42.14 E-value=10 Score=36.69 Aligned_cols=47 Identities=23% Similarity=0.622 Sum_probs=33.0
Q ss_pred ccccccccccccchhhhhccc--cc-cccccccccccccCCCCCCcchhhhhh
Q 047845 660 KDLCCVCLDGRVEKRVFMCQG--CQ-RLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 660 ~~l~~~~l~~~~~~lv~~~~g--~~-r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
....|.|....-..||.|+ + |. .|||..|+++... +...|.|..|..
T Consensus 35 e~~yCiC~~~~~g~MI~CD-~~dC~~~WfH~~CVgl~~~--p~g~W~Cp~C~~ 84 (91)
T 1weu_A 35 EPTYCLCHQVSYGEMIGCD-NPDCSIEWFHFACVGLTTK--PRGKWFCPRCSQ 84 (91)
T ss_dssp CCBCSTTCCBCCSCCCCCS-CSSCSCCCCCSTTTTCSSC--CCSSCCCTTTCC
T ss_pred CCcEEECCCCCCCCEeEec-CCCCCCCCEecccCCcCcC--CCCCEECcCccC
Confidence 3466777664335677666 7 76 7999999997543 345799998864
No 118
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=41.82 E-value=95 Score=32.52 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=56.7
Q ss_pred chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHhCC------CChhhhHHHHHHHHHHh
Q 047845 875 DKRVQLAVEGRFCDSAISVREAALELLAGILLH--------I-LMLYFVKVAERIKD------TGVSVRKRAIKIIRDMC 939 (1801)
Q Consensus 875 ~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L-~~~yy~~I~eRi~D------~GVsVRKRvIKilkdIy 939 (1801)
..+..++|.+|+....|.|-=-||.|+--+..+ + ..+|.+.+...+.+ +...||+|++.++..-.
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345677888999988888888899998873322 2 35677777777765 46789999999999988
Q ss_pred hhCCCCcchHH
Q 047845 940 TSNTNFTESTT 950 (1801)
Q Consensus 940 ~~~p~~~~~~~ 950 (1801)
...++.+.+.+
T Consensus 116 ~~f~~~p~i~~ 126 (148)
T 1mhq_A 116 VWFPEDIKIRD 126 (148)
T ss_dssp HHCTTCHHHHH
T ss_pred HHcCCCchHHH
Confidence 88776554333
No 119
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=41.20 E-value=13 Score=34.86 Aligned_cols=49 Identities=16% Similarity=0.464 Sum_probs=33.3
Q ss_pred cccccccccc-cchhhhhcc-ccccccccccccccccC-----CCCCCcchhhhhh
Q 047845 661 DLCCVCLDGR-VEKRVFMCQ-GCQRLFHADCLGVREHE-----VPNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~-~~~lv~~~~-g~~r~~~~~~l~~~~~e-----~~~~~w~~~~c~~ 709 (1801)
.+.|.|.... -..||.|.+ .|..|||..|+++.... .....|.|..|..
T Consensus 16 ~~~CiC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 16 KVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCSSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CEEeECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 4567777652 344555543 89999999999986543 1224799998865
No 120
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=40.31 E-value=28 Score=42.21 Aligned_cols=68 Identities=15% Similarity=0.246 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 908 ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 908 L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+.++||+.|++=..|..+.|||=++.++.+.|...+++ ...+..-+..-++|++..|.+-|.+++..+
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el--~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL--LLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999876553 344433333334588889999998887654
No 121
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=40.18 E-value=57 Score=44.25 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCC-ChhHHhHHHHHHHHHHhcCccccC--chhHHHHHHhhcCCCChhHHHHHHHHHHH-H--HHH-HH
Q 047845 837 DKILHLLLVSLREN-SPIIRAKALRAVSIIVEVDPEVLC--DKRVQLAVEGRFCDSAISVREAALELLAG-I--LLH-IL 909 (1801)
Q Consensus 837 d~iL~~LL~~L~~~-s~~vRSKALK~Ls~ive~DPsIL~--~~~Vq~~I~~rl~DsS~sVRDAAldLIGk-I--~~~-L~ 909 (1801)
..+|-.|+..|... +=..+.-||++|..+++.-|..+. -|++-..|..++.|..+-|.+||.+-+-+ . ..+ =+
T Consensus 132 ~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~ 211 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI 211 (986)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch
Confidence 66778888888654 456788899999999988898887 57899999999999999999999999999 3 233 67
Q ss_pred HHHHHHHHHHhCCCChhhhHH
Q 047845 910 MLYFVKVAERIKDTGVSVRKR 930 (1801)
Q Consensus 910 ~~yy~~I~eRi~D~GVsVRKR 930 (1801)
+.|++.|++++.++. .|-+-
T Consensus 212 ~~~~~~~~~~~~~p~-~~~~~ 231 (986)
T 2iw3_A 212 ERFIPSLIQCIADPT-EVPET 231 (986)
T ss_dssp GGGHHHHHHHHHCTT-HHHHH
T ss_pred hhhHHHHHHHhcChh-hhHHH
Confidence 789999999999995 34443
No 122
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=40.09 E-value=11 Score=32.48 Aligned_cols=45 Identities=24% Similarity=0.619 Sum_probs=30.7
Q ss_pred ccccccccccc-hhhhhccccccccccccccccccCCCCCCcchhhhh
Q 047845 662 LCCVCLDGRVE-KRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCL 708 (1801)
Q Consensus 662 l~~~~l~~~~~-~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~ 708 (1801)
+.|.|...... .||.|. +|..+||..|+++...+.+ ..|.|..|.
T Consensus 5 ~~C~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~-~~~~C~~C~ 50 (52)
T 3o7a_A 5 VTCFCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50 (52)
T ss_dssp BCSTTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCC-SSCCCHHHH
T ss_pred eEEEeCCcCCCCCEEEcC-CCCccccccccCCCcccCC-CcEECcCCC
Confidence 34566543223 456555 8999999999998765443 479888774
No 123
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.98 E-value=6.4 Score=36.61 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=33.4
Q ss_pred ccccccccccc-chhhhhccccccccccccccccccCC-----CCCCcchhhhhh
Q 047845 661 DLCCVCLDGRV-EKRVFMCQGCQRLFHADCLGVREHEV-----PNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~~-~~lv~~~~g~~r~~~~~~l~~~~~e~-----~~~~w~~~~c~~ 709 (1801)
.+.|.|..... +.||.|. +|..|||..|+++..... ....|.|..|..
T Consensus 16 ~~~C~C~~~~~~~~MI~Cd-~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 16 ALYCICRQPHNNRFMICCD-RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CCCSTTCCCCCSSCEEECS-SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCEEECCCccCCCCEEEeC-CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 46788875533 3456665 999999999999854321 234799998865
No 124
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.43 E-value=11 Score=33.79 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=31.6
Q ss_pred ccc-cccccc--cchhhhhccccccccccccccccccCCC-CCCcchhhhhh
Q 047845 662 LCC-VCLDGR--VEKRVFMCQGCQRLFHADCLGVREHEVP-NRGWNCQLCLC 709 (1801)
Q Consensus 662 l~~-~~l~~~--~~~lv~~~~g~~r~~~~~~l~~~~~e~~-~~~w~~~~c~~ 709 (1801)
..| .|.... -..||.|. +|.+|||..|+++...+.. ...|.|..|..
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCD-LCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECS-SSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCCCEEEcc-CCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 345 555432 23456665 9999999999998654432 24799998865
No 125
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=37.62 E-value=8.6e+02 Score=32.19 Aligned_cols=139 Identities=9% Similarity=0.055 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHh----cCCChhHHhHHHHHHHHHHhcCccccCc--hhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--
Q 047845 836 FDKILHLLLVSL----RENSPIIRAKALRAVSIIVEVDPEVLCD--KRVQLAVEGRFCDSAISVREAALELLAGILLH-- 907 (1801)
Q Consensus 836 Fd~iL~~LL~~L----~~~s~~vRSKALK~Ls~ive~DPsIL~~--~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~-- 907 (1801)
++.++..+-..+ .......|--|+-+|+.|.+.=+.--.. +.|...+ ..+.++++.||.+|+..||++...
T Consensus 443 l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~ 521 (963)
T 2x19_B 443 LSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLA 521 (963)
T ss_dssp HHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 344455555555 4556677888999999998763221111 1232322 366778899999999999993322
Q ss_pred ----HHHHHHHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCC--cchHHHHH---HhhcccCCCchhHHHHHHHHHHhhc
Q 047845 908 ----ILMLYFVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNF--TESTTACI---EIISRVNDDESSIQDLVCKTFYEFW 978 (1801)
Q Consensus 908 ----L~~~yy~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~--~~~~~i~~---~iL~Rv~DEEdsIkdLa~~tf~elW 978 (1801)
+.....+.|...+.| ..||.++...+..+|...++. +-...+.. .++.+ .+.+...+..+.+++-.+-
T Consensus 522 ~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~-~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 522 DHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK-QIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHH
Confidence 444556677777777 679999999999999765431 22233332 33332 1233455666666666554
No 126
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=36.20 E-value=1.1e+02 Score=41.24 Aligned_cols=134 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 047845 834 RGFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLHILMLYF 913 (1801)
Q Consensus 834 ~sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~L~~~yy 913 (1801)
...|.++..+.. +..+-+|.-|+=+++.-=---.+ ...|+..++.+..|.+.-||.+||-=||.|...-.+..-
T Consensus 541 e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn---~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 541 ELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGN---NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCC---HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Q ss_pred HHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 914 VKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 914 ~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+.+.-...+...-||..|.--|--+|..+|+ .+..++..++ .+|.++-|+.-|...|-.+
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L---~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPL---TKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHH---HTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHH---ccCCCHHHHHHHHHHHHHH
No 127
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.93 E-value=11 Score=34.56 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=32.1
Q ss_pred ccccccccccchhhhhcccc---ccccccccccccccCCCCCCcchhhhhhh
Q 047845 662 LCCVCLDGRVEKRVFMCQGC---QRLFHADCLGVREHEVPNRGWNCQLCLCR 710 (1801)
Q Consensus 662 l~~~~l~~~~~~lv~~~~g~---~r~~~~~~l~~~~~e~~~~~w~~~~c~~~ 710 (1801)
+.|.|....-..||.|+ +| ..+||.+|+++... +...|.|..|...
T Consensus 7 ~yC~C~~~~~g~MI~CD-~cdC~~~WfH~~Cvgl~~~--p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 7 GYCICNQVSYGEMVGCD-NQDCPIEWFHYGCVGLTEA--PKGKWYCPQCTAA 55 (70)
T ss_dssp CCSTTSCCCCSSEECCS-CTTCSCCCEEHHHHTCSSC--CSSCCCCHHHHHH
T ss_pred eEEEcCCCCCCCEeEeC-CCCCCccCCcccccccCcC--CCCCEECCCCCcc
Confidence 45666544334667666 65 58999999998543 4458999998753
No 128
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=35.93 E-value=13 Score=40.28 Aligned_cols=43 Identities=26% Similarity=0.637 Sum_probs=31.5
Q ss_pred cccccccchhhhhccccccccccccccccccCCCCCCcchhhhhhh
Q 047845 665 VCLDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCR 710 (1801)
Q Consensus 665 ~~l~~~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~~ 710 (1801)
.|.++ ++++.|+ +|.+.||..|+.......+...|.|..|...
T Consensus 9 ~C~~~--g~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 9 VCQNG--GELLCCE-KCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp TTCCC--SSCEECS-SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred cCCCC--CeeeecC-CCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 45433 3466555 9999999999976555566678999999763
No 129
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=35.42 E-value=7.3 Score=41.86 Aligned_cols=49 Identities=22% Similarity=0.538 Sum_probs=33.9
Q ss_pred cccccccccc--cchhhhhccccccccccccccccccC-CCCCCcchhhhhhh
Q 047845 661 DLCCVCLDGR--VEKRVFMCQGCQRLFHADCLGVREHE-VPNRGWNCQLCLCR 710 (1801)
Q Consensus 661 ~l~~~~l~~~--~~~lv~~~~g~~r~~~~~~l~~~~~e-~~~~~w~~~~c~~~ 710 (1801)
...|.|.... .+.++-|+ +|.+|||..|++....+ .....|.|..|...
T Consensus 8 ~~~C~C~~~~~~~~~mi~Cd-~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 8 KLYCICKTPEDESKFYIGCD-RCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CEETTTTEECCTTSCEEECT-TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CcEeeCCCCCCCCCCEeECC-CCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3567776532 23456555 99999999999975433 22347999999864
No 130
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=35.30 E-value=2e+02 Score=29.74 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=54.2
Q ss_pred HHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHhCCCChhhhHHHH
Q 047845 862 VSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH--------I-LMLYFVKVAERIKDTGVSVRKRAI 932 (1801)
Q Consensus 862 Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L-~~~yy~~I~eRi~D~GVsVRKRvI 932 (1801)
|.-+|..+|. ...++.++|.+|+....|.|-=-||.|+.-+..+ + ..+|.+.+...+..+...||+|++
T Consensus 29 icD~I~~~~~--~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil 106 (140)
T 3ldz_A 29 ICDKVGQSRT--GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLK 106 (140)
T ss_dssp HHHHHTTSTT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHH
Confidence 3444555552 2345677888889888888877788888763222 1 133444444444446779999999
Q ss_pred HHHHHHhhhCCCCcc
Q 047845 933 KIIRDMCTSNTNFTE 947 (1801)
Q Consensus 933 KilkdIy~~~p~~~~ 947 (1801)
.++..-....++.+.
T Consensus 107 ~li~~W~~~f~~~~~ 121 (140)
T 3ldz_A 107 ALMVEWTDEFKNDPQ 121 (140)
T ss_dssp HHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhCCCCC
Confidence 999887766555444
No 131
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.25 E-value=13 Score=35.70 Aligned_cols=38 Identities=26% Similarity=0.595 Sum_probs=29.5
Q ss_pred chhhhhccccccccccccccccccC----CCCCCcchhhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHE----VPNRGWNCQLCLCR 710 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e----~~~~~w~~~~c~~~ 710 (1801)
+.|+.|. +|.+.||.+|++..-.+ .+...|.|..|...
T Consensus 31 ~~ll~CD-~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 31 NQLVECQ-ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCEEECS-SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CceEECC-CCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 4677766 99999999999964332 56678999999764
No 132
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=34.74 E-value=12 Score=41.42 Aligned_cols=43 Identities=26% Similarity=0.615 Sum_probs=31.9
Q ss_pred cccccccchhhhhccccccccccccccccccCCCCCCcchhhhhhh
Q 047845 665 VCLDGRVEKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCR 710 (1801)
Q Consensus 665 ~~l~~~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~~ 710 (1801)
.|.++ ++++.|+ +|.+.||..|+...-.+.|...|.|..|...
T Consensus 12 ~C~~~--g~ll~Cd-~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 54 (207)
T 3u5n_A 12 VCQNG--GDLLCCE-KCPKVFHLTCHVPTLLSFPSGDWICTFCRDI 54 (207)
T ss_dssp TTCCC--EEEEECS-SSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCCC--CceEEcC-CCCCccCCccCCCCCCCCCCCCEEeCceeCc
Confidence 45543 3466555 9999999999976555567778999999753
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=34.25 E-value=2.5e+02 Score=29.73 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=54.9
Q ss_pred HHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHhCC-CChhhhHH
Q 047845 861 AVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH--------IL-MLYFVKVAERIKD-TGVSVRKR 930 (1801)
Q Consensus 861 ~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L~-~~yy~~I~eRi~D-~GVsVRKR 930 (1801)
-|.-+|..+|. ...+..++|.+|+....|.|.=-||.|+.-+..+ ++ .+|.+.+...+.. +...||+|
T Consensus 38 eicD~I~~~~~--~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~k 115 (163)
T 1x5b_A 38 DICDKVGSTPN--GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEK 115 (163)
T ss_dssp HHHHHHHHSSS--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHhCCCc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHH
Confidence 34444444441 2345667888899988899988899999763222 11 3455444433333 45689999
Q ss_pred HHHHHHHHhhhCCCCcch
Q 047845 931 AIKIIRDMCTSNTNFTES 948 (1801)
Q Consensus 931 vIKilkdIy~~~p~~~~~ 948 (1801)
++.++..-....++.+..
T Consensus 116 il~li~~W~~~f~~~~~l 133 (163)
T 1x5b_A 116 LKSLMVEWSEEFQKDPQF 133 (163)
T ss_dssp HHHHHHHHHHHTTTCSTT
T ss_pred HHHHHHHHHHHhcCCccc
Confidence 999998877666554433
No 134
>2jby_A M11L protein; apoptosis; 2.41A {Myxoma virus} PDB: 2jbx_A 2o42_A
Probab=33.31 E-value=41 Score=33.86 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=28.5
Q ss_pred chhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH
Q 047845 875 DKRVQLAVEGRFCDSAISVREAALELLAGILLH 907 (1801)
Q Consensus 875 ~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~ 907 (1801)
-..|+++|.--+.|++|||.=|++.|++.|..+
T Consensus 74 I~nvkn~l~~~l~D~rPSVkLAtisLLSiIIkK 106 (145)
T 2jby_A 74 IVNIKNTLTFALRDASPSVKLATLTLLASVIKK 106 (145)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence 467899998899999999999999999985444
No 135
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=32.79 E-value=12 Score=36.08 Aligned_cols=37 Identities=32% Similarity=0.713 Sum_probs=29.3
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
.+|+.|+ +|.+.||.+|+...-.+.|...|.|..|..
T Consensus 35 g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 35 GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 3577665 999999999997555556777899999975
No 136
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.44 E-value=2.4e+02 Score=29.71 Aligned_cols=94 Identities=15% Similarity=0.145 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCccccCchhHHHHHHhhcC-CCChhHHHHHHHHHHHHHHH--------H-HHHHHHH-HHHHhC---CC
Q 047845 858 ALRAVSIIVEVDPEVLCDKRVQLAVEGRFC-DSAISVREAALELLAGILLH--------I-LMLYFVK-VAERIK---DT 923 (1801)
Q Consensus 858 ALK~Ls~ive~DPsIL~~~~Vq~~I~~rl~-DsS~sVRDAAldLIGkI~~~--------L-~~~yy~~-I~eRi~---D~ 923 (1801)
.+--|.-+|..++. ...++.++|.+|+. ...+.|.=-||.|+--+..+ + ..+|.+. +...+. ++
T Consensus 36 ~~leicD~I~~~~~--~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~ 113 (157)
T 1elk_A 36 LNMEICDIINETEE--GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNP 113 (157)
T ss_dssp HHHHHHHHHHHSSS--HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCC
T ss_pred HHHHHHHHHhCCCc--cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCC
Confidence 34455566666653 34567788999997 57788888899999873322 2 2346666 455554 45
Q ss_pred ChhhhHHHHHHHHHHhhhC---CCCcchHHHHH
Q 047845 924 GVSVRKRAIKIIRDMCTSN---TNFTESTTACI 953 (1801)
Q Consensus 924 GVsVRKRvIKilkdIy~~~---p~~~~~~~i~~ 953 (1801)
...||+|++.++..-.... |++..+.++..
T Consensus 114 ~~~Vk~kil~li~~W~~~f~~~p~l~~i~~~Y~ 146 (157)
T 1elk_A 114 PTIVHDKVLNLIQSWADAFRSSPDLTGVVTIYE 146 (157)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHH
Confidence 5689999999988876654 44444444433
No 137
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=31.06 E-value=62 Score=44.05 Aligned_cols=110 Identities=16% Similarity=0.005 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHhcC---CChhHHhHHHHHHHHHHhcCcccc--------CchhHHHHHHhhcC-----CCChhHHHHHH
Q 047845 835 GFDKILHLLLVSLRE---NSPIIRAKALRAVSIIVEVDPEVL--------CDKRVQLAVEGRFC-----DSAISVREAAL 898 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~---~s~~vRSKALK~Ls~ive~DPsIL--------~~~~Vq~~I~~rl~-----DsS~sVRDAAl 898 (1801)
.|+.+...+-..+.. ..-.-+=-||-+|+.+-|.=+... ..|.+...+...+. |+.|.||-++.
T Consensus 437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~ 516 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYM 516 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 344444444444431 112335557777777666533211 12334444433322 89999999999
Q ss_pred HHHHHHH----HH--HHHHHHHHHHH--HhCCCChhhhHHHHHHHHHHhhhCCC
Q 047845 899 ELLAGIL----LH--ILMLYFVKVAE--RIKDTGVSVRKRAIKIIRDMCTSNTN 944 (1801)
Q Consensus 899 dLIGkI~----~~--L~~~yy~~I~e--Ri~D~GVsVRKRvIKilkdIy~~~p~ 944 (1801)
++||+.. .+ +.+.-.+.+.. .+.|+...||-|+...++.+|..+..
T Consensus 517 ~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 517 EILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 9999933 33 33344444444 45557788999999999999988765
No 138
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.03 E-value=8.3 Score=36.16 Aligned_cols=48 Identities=23% Similarity=0.521 Sum_probs=33.3
Q ss_pred cccccccccc--cchhhhhccccccccccccccccccCC-CCCCcchhhhhh
Q 047845 661 DLCCVCLDGR--VEKRVFMCQGCQRLFHADCLGVREHEV-PNRGWNCQLCLC 709 (1801)
Q Consensus 661 ~l~~~~l~~~--~~~lv~~~~g~~r~~~~~~l~~~~~e~-~~~~w~~~~c~~ 709 (1801)
.+.|.|.... -..||.|. .|..|||..|+++...+. ....|.|..|..
T Consensus 12 ~~~C~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 12 PVYCLCRQPYNVNHFMIECG-LCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp CCCSTTSCSCCSSSCEEEBT-TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred ccEEEcCCccCCCCceEEcC-CCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 3567776542 34566665 899999999999855432 124799998865
No 139
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=30.37 E-value=16 Score=39.92 Aligned_cols=37 Identities=32% Similarity=0.700 Sum_probs=28.6
Q ss_pred hhhhhccccccccccccccccccCCCCCCcchhhhhhh
Q 047845 673 KRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLCR 710 (1801)
Q Consensus 673 ~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~~ 710 (1801)
+++.|. +|.+.||.+|+.-.-...+...|.|..|...
T Consensus 13 ~ll~Cd-~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 13 DLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp SCCCCT-TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred ceeECC-CCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 466555 9999999999975444556678999999764
No 140
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=29.57 E-value=3.4e+02 Score=29.90 Aligned_cols=83 Identities=8% Similarity=0.076 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCccccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHHH--------H-HHHHHHHHHHHhC-CCChhhh
Q 047845 859 LRAVSIIVEVDPEVLCDKRVQLAVEGRFCDSAISVREAALELLAGILLH--------I-LMLYFVKVAERIK-DTGVSVR 928 (1801)
Q Consensus 859 LK~Ls~ive~DPsIL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~~--------L-~~~yy~~I~eRi~-D~GVsVR 928 (1801)
+--|.-+|..+|. ...+..++|.+|+....|.|---||.|+.-+..+ + ..+|.+.+...+. .+...||
T Consensus 26 ~leicd~i~~~~~--~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk 103 (220)
T 1dvp_A 26 ILLICDEINQKDV--TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVR 103 (220)
T ss_dssp HHHHHHHHHTTSS--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHhhcCCCc--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHH
Confidence 4456667777765 4456777899999999999999999999873322 1 1124444333332 4567899
Q ss_pred HHHHHHHHHHhhhCC
Q 047845 929 KRAIKIIRDMCTSNT 943 (1801)
Q Consensus 929 KRvIKilkdIy~~~p 943 (1801)
+|++.++..-....+
T Consensus 104 ~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 104 QKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999887765543
No 141
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=28.87 E-value=14 Score=33.11 Aligned_cols=37 Identities=19% Similarity=0.536 Sum_probs=28.4
Q ss_pred chhhhhccccccccccccccccccC--C-CCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHE--V-PNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e--~-~~~~w~~~~c~~ 709 (1801)
..|+.|. +|.+.||..|++..... . +...|.|..|..
T Consensus 21 ~~ll~Cd-~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 21 NEMVICD-KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp BCEEECS-SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCEEECC-CCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 5667666 99999999999974332 2 556899999975
No 142
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=28.14 E-value=23 Score=39.86 Aligned_cols=44 Identities=27% Similarity=0.615 Sum_probs=28.7
Q ss_pred ccccc-ccchhhhhccccccccccccccccccCCCCC-Ccchhhhhh
Q 047845 665 VCLDG-RVEKRVFMCQGCQRLFHADCLGVREHEVPNR-GWNCQLCLC 709 (1801)
Q Consensus 665 ~~l~~-~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~-~w~~~~c~~ 709 (1801)
.|... ..+.|+.|. +|.+.||..|++..-...|.. .|.|..|..
T Consensus 179 vC~~~~~~~~lL~CD-~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 179 LCGGRQDPDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SSCCCCC--CCEECS-SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCCCCCCCeEEcC-CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 45443 345666665 999999999999654556665 899999964
No 143
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=26.81 E-value=23 Score=32.44 Aligned_cols=38 Identities=29% Similarity=0.644 Sum_probs=28.8
Q ss_pred cchhhhhccccccccccccccccccCCCCC-Ccchhhhhh
Q 047845 671 VEKRVFMCQGCQRLFHADCLGVREHEVPNR-GWNCQLCLC 709 (1801)
Q Consensus 671 ~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~-~w~~~~c~~ 709 (1801)
.+.|+.++ +|.+.||.+|++..-.+.|.. .|.|..|..
T Consensus 30 ~~~ll~CD-~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 30 PDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp GGGEEECT-TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCEEEcC-CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 45667665 999999999999544455655 899998853
No 144
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.50 E-value=13 Score=46.52 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=34.7
Q ss_pred ccccccccc-c-cchhhhhccccccccccccccccccCCCC-CCcchhhhhhh
Q 047845 661 DLCCVCLDG-R-VEKRVFMCQGCQRLFHADCLGVREHEVPN-RGWNCQLCLCR 710 (1801)
Q Consensus 661 ~l~~~~l~~-~-~~~lv~~~~g~~r~~~~~~l~~~~~e~~~-~~w~~~~c~~~ 710 (1801)
.+.|.|... . -+.|+.|+ +|..|||..|+++...+... ..|.|..|...
T Consensus 37 ~~yC~C~~~~d~~~~MIqCd-~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYCVCRQPYDVNRFMIECD-ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEETTTTEECCTTSCEEEBT-TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEEeCCCcCCCCCCeEEcc-CCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 467888753 2 24456665 99999999999986554321 37999999763
No 145
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=24.04 E-value=9.4 Score=32.92 Aligned_cols=35 Identities=31% Similarity=0.643 Sum_probs=22.9
Q ss_pred hhhhhccccccccccccccccccCCCCCCcchhhh
Q 047845 673 KRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLC 707 (1801)
Q Consensus 673 ~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c 707 (1801)
.+|.+.++|.++||..|+++.........|.|..|
T Consensus 17 ~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C 51 (52)
T 2kgg_A 17 DWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINC 51 (52)
T ss_dssp CEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC
T ss_pred cEEEeCCCCCccCcccccCCCccccCCCCEECCCC
Confidence 35555437999999999998544321246776654
No 146
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=24.01 E-value=13 Score=33.79 Aligned_cols=36 Identities=28% Similarity=0.768 Sum_probs=25.0
Q ss_pred hhhhhccccccccccccccccccC------CCCCCcchhhhh
Q 047845 673 KRVFMCQGCQRLFHADCLGVREHE------VPNRGWNCQLCL 708 (1801)
Q Consensus 673 ~lv~~~~g~~r~~~~~~l~~~~~e------~~~~~w~~~~c~ 708 (1801)
.++.|+.+|.++||..|+++.... .+...|.|..|.
T Consensus 23 ~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 23 DAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp CEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 344443389999999999986532 244578888774
No 147
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.80 E-value=26 Score=32.87 Aligned_cols=38 Identities=24% Similarity=0.586 Sum_probs=28.8
Q ss_pred ccchhhhhccccccccccccccccccCCCCC-Ccchhhhh
Q 047845 670 RVEKRVFMCQGCQRLFHADCLGVREHEVPNR-GWNCQLCL 708 (1801)
Q Consensus 670 ~~~~lv~~~~g~~r~~~~~~l~~~~~e~~~~-~w~~~~c~ 708 (1801)
..+.|+.|+ +|.+.||.+|++..-.+.|.. .|.|..|.
T Consensus 37 ~~~~ll~CD-~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 37 EPNMQLLCD-ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp CSTTEEECS-SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCCCEEEcC-CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 345677666 999999999999544455655 89998875
No 148
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.31 E-value=32 Score=34.44 Aligned_cols=37 Identities=32% Similarity=0.783 Sum_probs=29.7
Q ss_pred chhhhhccccccccccccccccccCCCCCCcchhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVPNRGWNCQLCLC 709 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~~~~w~~~~c~~ 709 (1801)
+.|+.|+ +|.+.||.+|++..-.+.|...|.|..|..
T Consensus 71 ~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 71 DQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp TTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CceEEcC-CCCccccccccCCCccCCCCCCeECccccc
Confidence 4566666 999999999999655566777999998865
No 149
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=23.28 E-value=5e+02 Score=29.36 Aligned_cols=132 Identities=15% Similarity=0.168 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCccccCchhHHHHHHhhc-CCCChhHHHHHHHHHHH-HHHH-HHHHH
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPEVLCDKRVQLAVEGRF-CDSAISVREAALELLAG-ILLH-ILMLY 912 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPsIL~~~~Vq~~I~~rl-~DsS~sVRDAAldLIGk-I~~~-L~~~y 912 (1801)
-+.++.+......+++=.+|-=|.+.|++. . ..+.+-..|...+ .|.+=-|||.+=..+++ +... .+ +.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-~~ 140 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-KA 140 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-TT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-HH
Confidence 355566666667788889999999988887 3 2345555565433 48888999999888888 4322 21 24
Q ss_pred HHHHHHHhCCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhccc-CCCchhHHHHHHHHHHh
Q 047845 913 FVKVAERIKDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRV-NDDESSIQDLVCKTFYE 976 (1801)
Q Consensus 913 y~~I~eRi~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv-~DEEdsIkdLa~~tf~e 976 (1801)
.+.+.+=..|...=||+=|+.-++--| ..|.+...++.+..+|... .|+|.-|++-+-..|.+
T Consensus 141 l~~~~~W~~d~n~~VRR~Ase~~rpW~-~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 141 LPIIDEWLKSSNLHTRRAATEGLRIWT-NRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHTCSGG-GSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHhhHHHh-ccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 456677888999999999998877544 3466666677766666544 67777777776665554
No 150
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=23.09 E-value=4.7e+02 Score=29.22 Aligned_cols=99 Identities=9% Similarity=0.036 Sum_probs=67.7
Q ss_pred HHHHHHhcCCCh--hHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH---H----
Q 047845 841 HLLLVSLRENSP--IIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSAISVREAALELLAGILL---H---- 907 (1801)
Q Consensus 841 ~~LL~~L~~~s~--~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~---~---- 907 (1801)
..++..|.++.+ .++.-|..+|..+...|+. |...-.|...| +-|...++.|++.|+.-++.+.. .
T Consensus 11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV-~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLL-QLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHH-HGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHH-HHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455667777777 8888888999888866642 33333344444 46667789999999999998542 1
Q ss_pred -HHHHHHHHHHHHhCC-CChhhhHHHHHHHHHHhh
Q 047845 908 -ILMLYFVKVAERIKD-TGVSVRKRAIKIIRDMCT 940 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D-~GVsVRKRvIKilkdIy~ 940 (1801)
...--.+.|..-+.. ....||+.+...|+.+-.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc
Confidence 222356666666654 457899999999998853
No 151
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.69 E-value=1.4e+02 Score=31.09 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCc
Q 047845 835 GFDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDP 870 (1801)
Q Consensus 835 sFd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DP 870 (1801)
.|..|+..|+.-|.+..+-+.-||||+|-.++..-+
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 358899999999999999999999999999986543
No 152
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=21.51 E-value=1.2e+03 Score=30.10 Aligned_cols=211 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc----------ccCchhHHHHHHhhcCCCChh-----HHHHHHHH
Q 047845 836 FDKILHLLLVSLRENSPIIRAKALRAVSIIVEVDPE----------VLCDKRVQLAVEGRFCDSAIS-----VREAALEL 900 (1801)
Q Consensus 836 Fd~iL~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs----------IL~~~~Vq~~I~~rl~DsS~s-----VRDAAldL 900 (1801)
|+ +...|+.-|-+++=-+|--|-=+|-.|+..-.. =|+-.-+--....||.|=..- |||+|=..
T Consensus 173 fq-fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQt 251 (800)
T 3oc3_A 173 LD-FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYL 251 (800)
T ss_dssp GG-TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHH
T ss_pred HH-HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHh---CCCChhhhHHHHHHHHHHhhhCCCCcchHHHHHHhhcccCCCchhHHHHHHHHHHhh
Q 047845 901 LAGILLHILMLYFVKVAERI---KDTGVSVRKRAIKIIRDMCTSNTNFTESTTACIEIISRVNDDESSIQDLVCKTFYEF 977 (1801)
Q Consensus 901 IGkI~~~L~~~yy~~I~eRi---~D~GVsVRKRvIKilkdIy~~~p~~~~~~~i~~~iL~Rv~DEEdsIkdLa~~tf~el 977 (1801)
+|.+ .++..+ +..|..-+ ...-=.||=-.+=-+| |. ..-......++..++.-..|.||-|+..|-++|..+
T Consensus 252 LGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLK--YL-~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 252 LSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALG--YL-KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHF 326 (800)
T ss_dssp HHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHH--HT-GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTS
T ss_pred HHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHH--HH-HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhh
Q ss_pred ccCCCCCCcccccCCCCCchHHHHHHHHHHHHHHhcCCChhhHHHHHHHhhhcccCcchhhhhCCCcchhhHHHHHHHHH
Q 047845 978 WFEEPSGLQTQYFGDGSSVPLEVAKKTEQIVEMSRGLPNHQLLVTVIKRNLALDFFPQSAKAAGINPMSLASVRRRCELM 1057 (1801)
Q Consensus 978 WF~p~~~~~~~~~~d~ss~~~~~~~k~~~iv~vl~~~~~~~~lv~~~k~~l~~d~l~~~~k~~~~~~~~~~~v~~~c~~i 1057 (1801)
= .|.. ...+
T Consensus 327 A-~p~~----------------------------------------------------------------------l~~L 335 (800)
T 3oc3_A 327 P-ITDS----------------------------------------------------------------------LDLV 335 (800)
T ss_dssp C-CSST----------------------------------------------------------------------HHHH
T ss_pred c-chhh----------------------------------------------------------------------HHHH
Q ss_pred HHHHHHHHHhhcccccccccccchhHHHHHHhhhccccCccCCCCCccchhhhhccccccccCh--HHHHHhhccee
Q 047845 1058 CKCLLERILQVEEMNNEGMEMRTLPYVLVLHAFCVVDPTLCAPVSDPSQFVITLQPYLKSQVDN--RVVAKFLESVI 1132 (1801)
Q Consensus 1058 vd~LVe~ll~lee~~~~~~~~~~~~~l~~L~~Fak~~P~L~~~~~~~~~~i~~L~PYL~~~~~~--~~~~~il~~Vv 1132 (1801)
.+.|-+.+.++|+.++. ..+.+.+|..++...+...... .-+..|.|++.+..++ ..+++.+...+
T Consensus 336 L~iLWd~L~~LDDLSAS-----TgSVMdLLAkL~s~p~~a~~dp----~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 336 LEKCWKNIESEELISVS-----KTSNLSLLTKIYRENPELSIPP----ERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTCCSCCTT-----HHHHHHHHHHHHHHCTTCCCCS----GGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhhcccchh-----hHHHHHHHHHHHcCCcccccCh----HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
No 153
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=20.63 E-value=26 Score=43.87 Aligned_cols=39 Identities=23% Similarity=0.550 Sum_probs=28.3
Q ss_pred chhhhhccccccccccccccccccCCC-CCCcchhhhhhh
Q 047845 672 EKRVFMCQGCQRLFHADCLGVREHEVP-NRGWNCQLCLCR 710 (1801)
Q Consensus 672 ~~lv~~~~g~~r~~~~~~l~~~~~e~~-~~~w~~~~c~~~ 710 (1801)
+.+++++++|..|||..|+++...+.. ...|.|+.|...
T Consensus 55 ~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 55 DFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp TTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred CCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 334444459999999999998765432 247999999763
No 154
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=20.51 E-value=3.6e+02 Score=34.42 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCChhHHhHHHHHHHHHHhcCcc----ccCchhHHHHHHhhcCCCChhHHHHHHHHHHHHHH----H----
Q 047845 840 LHLLLVSLRENSPIIRAKALRAVSIIVEVDPE----VLCDKRVQLAVEGRFCDSAISVREAALELLAGILL----H---- 907 (1801)
Q Consensus 840 L~~LL~~L~~~s~~vRSKALK~Ls~ive~DPs----IL~~~~Vq~~I~~rl~DsS~sVRDAAldLIGkI~~----~---- 907 (1801)
+..++..|.++.+.++..|..+|..+...++. |...-.|...| +.|...++.|++.|+.-++.+.. .
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV-~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~ 128 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLV-GLLDHPKKEVHLGACGALKNISFGRDQDNKIA 128 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH-HGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHH-HHHCCCCHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 55677778888899999999999888865542 33333444444 46777889999999999999432 1
Q ss_pred -HHHHHHHHHHHHhCC-CChhhhHHHHHHHHHHhh
Q 047845 908 -ILMLYFVKVAERIKD-TGVSVRKRAIKIIRDMCT 940 (1801)
Q Consensus 908 -L~~~yy~~I~eRi~D-~GVsVRKRvIKilkdIy~ 940 (1801)
...--.+.|+.-+.. ....|++.+...|+.+..
T Consensus 129 I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC
Confidence 222345666666654 457789999999988864
No 155
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.15 E-value=26 Score=32.43 Aligned_cols=47 Identities=30% Similarity=0.656 Sum_probs=33.0
Q ss_pred cccccccc-c-cchhhhhccccccccccccccccccCCCC-CCcchhhhhh
Q 047845 662 LCCVCLDG-R-VEKRVFMCQGCQRLFHADCLGVREHEVPN-RGWNCQLCLC 709 (1801)
Q Consensus 662 l~~~~l~~-~-~~~lv~~~~g~~r~~~~~~l~~~~~e~~~-~~w~~~~c~~ 709 (1801)
+.|.|... . ...||.|. .|..+||..|+++...+.+. ..|.|..|..
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd-~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECD-ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp EETTTTEECCTTSCEEECT-TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred eEEECCCcCCCCCCEEEcC-CCCCCEecccccccccccCCCCEEECCCCcc
Confidence 56777643 2 23566665 89999999999987654322 4799999865
Done!