Query 047846
Match_columns 181
No_of_seqs 120 out of 857
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00228 hypothetical protein; 100.0 6.5E-51 1.4E-55 328.7 15.3 165 3-179 22-190 (191)
2 COG1678 Putative transcription 100.0 1.7E-48 3.6E-53 311.5 14.5 164 3-179 25-192 (194)
3 PF02622 DUF179: Uncharacteriz 100.0 1.6E-48 3.5E-53 306.8 9.8 154 3-167 5-161 (161)
4 PF11097 DUF2883: Protein of u 69.1 4.1 8.8E-05 27.5 2.0 19 114-132 6-24 (75)
5 PF14237 DUF4339: Domain of un 47.4 23 0.00051 21.4 2.6 31 94-124 14-44 (45)
6 PRK12359 flavodoxin FldB; Prov 34.6 66 0.0014 25.4 4.0 19 114-132 48-66 (172)
7 PF14822 Vasohibin: Vasohibin 33.9 15 0.00032 31.0 0.2 60 6-68 144-211 (246)
8 PF06051 DUF928: Domain of Unk 25.4 35 0.00076 27.4 1.0 44 132-177 143-187 (189)
9 PF06613 KorB_C: KorB C-termin 24.3 48 0.001 21.9 1.3 24 9-37 7-31 (60)
10 PF08115 Toxin_28: SFI toxin f 23.0 1.1E+02 0.0023 17.8 2.4 26 7-36 5-30 (35)
No 1
>PRK00228 hypothetical protein; Validated
Probab=100.00 E-value=6.5e-51 Score=328.74 Aligned_cols=165 Identities=28% Similarity=0.515 Sum_probs=140.0
Q ss_pred CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCccccc---ccccCCceeecCcccCCe-EEEEeCCCCC
Q 047846 3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELA---TTFADCSLHFGGPLEASM-FLLKTGQSKL 78 (181)
Q Consensus 3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~---~~~~~~~v~~GGPV~~~~-~~lh~~~~~~ 78 (181)
.|++|+||||||| +|+++||+|||||||++.+++++.+++.... ..+.+.|||+||||++++ ++||+....+
T Consensus 22 ~d~~F~rSVIll~----eH~~~Ga~GlIlNrp~~~~l~~ll~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~~ 97 (191)
T PRK00228 22 QDPNFARSVIYIC----EHNENGAMGLVINRPSELDVAEVLPQLDILATPPEIRLDQPVFLGGPVQTDRGFVLHSPRDGF 97 (191)
T ss_pred CCCCcCccEEEEE----EeCCCCceEEEEcCCCCCCHHHHHHHhcccccCcccccCCeEEeCCCccCCcEEEEEECCCcC
Confidence 4899999999999 8999999999999999999988876653211 123468999999999998 8888765567
Q ss_pred CCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHH
Q 047846 79 PGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESL 158 (181)
Q Consensus 79 ~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~l 158 (181)
.++.+|.+|||++++ ++.+.. +..+ ..++++|||+|||||+|||||+||++|+|++++|++++|| +++.+++
T Consensus 98 ~~s~~v~~gl~l~~s--~d~l~~-l~~~-~~~~~~~~flGyaGW~~gQLe~Ei~~g~W~v~~a~~~~lf----~~~~~~~ 169 (191)
T PRK00228 98 DSSIRVSDGLVLTTS--RDVLEA-LATG-PGPEGVLVALGYAGWGAGQLEQEIEENAWLTAPADPEILF----DTPPEDR 169 (191)
T ss_pred CCceeecCCeEEeCC--HHHHHH-HhcC-CCCCcEEEEEEECCCCHHHHHHHHHcCCeEEccCCHHHhc----CCCHHHH
Confidence 789999999999974 444333 3344 4679999999999999999999999999999999999996 3455999
Q ss_pred HHHHHHHcCCChhhhhcCCCC
Q 047846 159 WEEILQLMGGHYSELSRKPKQ 179 (181)
Q Consensus 159 W~~~l~~~G~~~~~ls~~p~~ 179 (181)
|+++|+++|++|+.||+.|.+
T Consensus 170 W~~~l~~~G~~~~~ls~~~g~ 190 (191)
T PRK00228 170 WRAALRRLGIDLALLSTQAGH 190 (191)
T ss_pred HHHHHHHhCCCHHHhcCCccC
Confidence 999999999999999999865
No 2
>COG1678 Putative transcriptional regulator [Transcription]
Probab=100.00 E-value=1.7e-48 Score=311.47 Aligned_cols=164 Identities=27% Similarity=0.466 Sum_probs=138.4
Q ss_pred CCCcccceEEEEeeeCCCCCCCCceEEEecccch-hcccccCCCcccccc-cccCCceeecCcccCCe-EEEEeCCC-CC
Q 047846 3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLH-KKIKHMKPTNHELAT-TFADCSLHFGGPLEASM-FLLKTGQS-KL 78 (181)
Q Consensus 3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~-~~l~~~~~~~~~~~~-~~~~~~v~~GGPV~~~~-~~lh~~~~-~~ 78 (181)
.|++|+||||||| ||+++||||||||||++ .++.++......... ...+.+||+||||++++ |+||+... ..
T Consensus 25 ~d~~F~RSVvyic----eH~e~GamGliiNrp~~~~~~~~l~~~~~~~~~~~~~~~~v~~GGPv~~~rgfvLh~~~~~~~ 100 (194)
T COG1678 25 QDPIFARSVVYIC----EHNENGAMGLIINRPSETLTLAELLEKLKLEIKILRLPKPVYLGGPVQRDRGFVLHSSDYGAF 100 (194)
T ss_pred CCCccceeEEEEE----EeCCCCcEEEEecCCccccCHHHHHHHhcccccccccCceEEeCCcccccceEEEEeCCCCCC
Confidence 4899999999999 89999999999999999 777776543211000 13468999999999998 99998554 34
Q ss_pred CCceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHH
Q 047846 79 PGFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESL 158 (181)
Q Consensus 79 ~~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~l 158 (181)
+.+++|.++++++++.|+.+++. .+ ..|+++++++|||||++||||+||++|.|++++|++++|| +.+.|++
T Consensus 101 ~ssl~v~~~~~lt~s~Dvl~~i~---~~-~~p~~~l~~lGYagW~~GQLE~Ei~~n~WL~~pA~~~~lF----~~~~edr 172 (194)
T COG1678 101 QSSLRVSDGLALTTSLDVLEAIA---AG-KGPEKALVALGYAGWAAGQLEEEIEDNDWLTVPADPEILF----DTPPEDR 172 (194)
T ss_pred cccceecCCEEEEecHhHHHHHh---cc-CCCCceEEEEEecccccchhHHHHhhCCEEEecCCHHHhc----CCCHHHH
Confidence 67899999999998777766664 33 5789999999999999999999999999999999999996 4566999
Q ss_pred HHHHHHHcCCChhhhhcCCCC
Q 047846 159 WEEILQLMGGHYSELSRKPKQ 179 (181)
Q Consensus 159 W~~~l~~~G~~~~~ls~~p~~ 179 (181)
|.++++++|+++..||. |.+
T Consensus 173 w~~al~~lGi~~~~lst-~ag 192 (194)
T COG1678 173 WARALRRLGIDLALLST-PAG 192 (194)
T ss_pred HHHHHHHcCCCHHHcCC-CcC
Confidence 99999999999999998 654
No 3
>PF02622 DUF179: Uncharacterized ACR, COG1678; InterPro: IPR003774 This entry describes proteins of unknown function.; PDB: 2DO8_A 2EW0_A 2GS5_A 2HRX_A 2AJ2_A 2HAF_A 2GZO_A.
Probab=100.00 E-value=1.6e-48 Score=306.81 Aligned_cols=154 Identities=40% Similarity=0.751 Sum_probs=129.6
Q ss_pred CCCcccceEEEEeeeCCCCCCCCceEEEecccchhcccccCCCccccc-ccccCCceeecCcccCCe-EEEEeCCCC-CC
Q 047846 3 GIRTFERTVVLLLRSGTRHPQEGPFGVVINRPLHKKIKHMKPTNHELA-TTFADCSLHFGGPLEASM-FLLKTGQSK-LP 79 (181)
Q Consensus 3 ~d~~F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~~~l~~~~~~~~~~~-~~~~~~~v~~GGPV~~~~-~~lh~~~~~-~~ 79 (181)
+|++|+||||||| +|+++||+|||||||++.++.++.+...... .++.+++||+||||++++ ++||+.... .+
T Consensus 5 ~d~~F~~sVVli~----~h~~~Ga~GlILNrp~~~~l~~~~~~~~~~~~~~~~~~~v~~GGPV~~~~~~~Lh~~~~~~~~ 80 (161)
T PF02622_consen 5 NDPNFHRSVVLIC----EHDEEGAMGLILNRPTNITLSELLEELELLPISAFSDQPVYFGGPVEPDRGFVLHSIPDLEGP 80 (161)
T ss_dssp TSTTTTTEEEEEE----EEETTEEEEEESSSEEEEEHHHHHHHTTCCSSTTCCCSEEEES-SEEEEEEEEEEEC-TTGCS
T ss_pred CCCCcCceEEEEE----EECCCCcEEEEecCCCCCCHHHHHHhhccccccccccCeEEECCCcccCeEEEEEECCCCCCC
Confidence 6899999999999 8999999999999999988888765443221 235789999999999996 888876554 47
Q ss_pred CceEeeCceEecccCCHHHHHHHHHcCCCCCCceEEEEeecCCCcchHHHHHhcCCeEEecCChhhhccccCCCChHHHH
Q 047846 80 GFEEVIPGLCFGARNSLDEAAALVKKGVLKPQDFRFFVGYAGWQLDQLREEIESDYWYVAACSSDLICGATSDTSSESLW 159 (181)
Q Consensus 80 ~~~~v~~gl~lg~~~~~~~~~~~v~~g~~~~~~~~~f~GyagW~pGQLe~Ei~~g~W~v~~a~~~~lf~~~~~~~~~~lW 159 (181)
++.+|.+|+|+++ +.+.+.++++++ .++.+||||+|||||+|||||+||++|+|++++|++++||+ . +.+++|
T Consensus 81 ~s~~v~~gl~~~~--~~~~~~~~i~~~-~~~~~~~~f~GysgW~~gQLe~Ei~~g~W~~~~a~~~~vf~---~-~~~~~W 153 (161)
T PF02622_consen 81 GSIEVSPGLYLGG--SLDALEALIAEG-AGPEDFRFFLGYSGWGPGQLEDEIARGSWLVAPASPDIVFE---T-PPEELW 153 (161)
T ss_dssp SEEECSSSEEEEE--STHHHHHHHTST-TSCSSEEEEEEEEEECTTHHHHHHHTTTEEEEE--HHHHCT---S-TSSHHH
T ss_pred CceEEeCCeEEec--cHHHHHHHHhCC-CCCceEEEEEEECCCCHHHHHHHHHcCCEEEeeCCHHHhhC---C-CHHHHH
Confidence 8999999999997 666777678887 78999999999999999999999999999999999999963 3 348999
Q ss_pred HHHHHHcC
Q 047846 160 EEILQLMG 167 (181)
Q Consensus 160 ~~~l~~~G 167 (181)
+++|++||
T Consensus 154 ~~~l~~~G 161 (161)
T PF02622_consen 154 REALRRLG 161 (161)
T ss_dssp HHHHHCTT
T ss_pred HHHHHHCc
Confidence 99999998
No 4
>PF11097 DUF2883: Protein of unknown function (DUF2883); InterPro: IPR020112 This group of proteins currently have no known function and are found primarily in the T4-like bacteriophages.
Probab=69.14 E-value=4.1 Score=27.54 Aligned_cols=19 Identities=21% Similarity=0.510 Sum_probs=15.9
Q ss_pred EEEEeecCCCcchHHHHHh
Q 047846 114 RFFVGYAGWQLDQLREEIE 132 (181)
Q Consensus 114 ~~f~GyagW~pGQLe~Ei~ 132 (181)
.+++||-||.+.-||+=|.
T Consensus 6 ~VYLg~pg~p~nKle~LMl 24 (75)
T PF11097_consen 6 DVYLGYPGLPPNKLEGLML 24 (75)
T ss_pred eEEEeCCCCChHHHHHHHH
Confidence 5899999999999996443
No 5
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=47.42 E-value=23 Score=21.38 Aligned_cols=31 Identities=26% Similarity=0.545 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHcCCCCCCceEEEEeecCCCc
Q 047846 94 NSLDEAAALVKKGVLKPQDFRFFVGYAGWQL 124 (181)
Q Consensus 94 ~~~~~~~~~v~~g~~~~~~~~~f~GyagW~p 124 (181)
.+++++.+++++|...+..+.---|.+.|.|
T Consensus 14 ~s~~el~~l~~~g~i~~~tlvw~~g~~~W~p 44 (45)
T PF14237_consen 14 FSLEELRQLISSGEIDPDTLVWKEGMSDWKP 44 (45)
T ss_pred cCHHHHHHHHHcCCCCCCCeEeCCChhhceE
Confidence 4789999999999999999988889999976
No 6
>PRK12359 flavodoxin FldB; Provisional
Probab=34.63 E-value=66 Score=25.43 Aligned_cols=19 Identities=21% Similarity=0.688 Sum_probs=15.5
Q ss_pred EEEEeecCCCcchHHHHHh
Q 047846 114 RFFVGYAGWQLDQLREEIE 132 (181)
Q Consensus 114 ~~f~GyagW~pGQLe~Ei~ 132 (181)
.+++|++-|+.|+|..+..
T Consensus 48 ~iIlG~pTw~~Gel~~d~~ 66 (172)
T PRK12359 48 VLILGIPTWDFGEIQEDWE 66 (172)
T ss_pred EEEEEecccCCCcCcHHHH
Confidence 4778999999999976554
No 7
>PF14822 Vasohibin: Vasohibin
Probab=33.89 E-value=15 Score=31.03 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=33.5
Q ss_pred cccceEEEEeeeCCCCCCCCceEE-----Eecccchh-cccccCCCcccccccc--cCCceeecCcccCCe
Q 047846 6 TFERTVVLLLRSGTRHPQEGPFGV-----VINRPLHK-KIKHMKPTNHELATTF--ADCSLHFGGPLEASM 68 (181)
Q Consensus 6 ~F~rSVVLi~~~~~eH~~~Ga~Gl-----ILNrp~~~-~l~~~~~~~~~~~~~~--~~~~v~~GGPV~~~~ 68 (181)
...|.|||.+. .+..-||+|+ ..+||+.. ++.++..++...-..- .-..|.+|.||..+.
T Consensus 144 ~~~~HIVL~v~---~~~~~GalGlSRr~~Lm~k~l~~~sls~li~~y~~sY~~~~H~l~kvkiGlpV~HD~ 211 (246)
T PF14822_consen 144 RVFRHIVLGVR---CGGKYGALGLSRRSDLMYKPLEFRSLSDLIFDYKESYEKYGHTLKKVKIGLPVPHDP 211 (246)
T ss_pred cEEEEEEEEEE---ECCeecccccccchhhcccchhhHHHHHHHHHHHHHHHHhCeEEEEEecccccCCCc
Confidence 34588999984 2334688886 24555553 3555544322100000 013588899998764
No 8
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=25.35 E-value=35 Score=27.39 Aligned_cols=44 Identities=30% Similarity=0.579 Sum_probs=28.4
Q ss_pred hcCCeEEe-cCChhhhccccCCCChHHHHHHHHHHcCCChhhhhcCC
Q 047846 132 ESDYWYVA-ACSSDLICGATSDTSSESLWEEILQLMGGHYSELSRKP 177 (181)
Q Consensus 132 ~~g~W~v~-~a~~~~lf~~~~~~~~~~lW~~~l~~~G~~~~~ls~~p 177 (181)
+.|-|+-+ ..-.++.-....+....+.|+++|+..|. ..+++.|
T Consensus 143 e~GiWyDaL~~La~lr~~~p~d~~l~~~W~~LL~svgL--~~ia~~p 187 (189)
T PF06051_consen 143 ENGIWYDALATLAELRRSQPNDPQLAQDWQELLESVGL--EEIAQEP 187 (189)
T ss_pred HhCchHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCc--hhhhhCc
Confidence 57889876 33344443333333446899999997665 5777776
No 9
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=24.31 E-value=48 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=13.6
Q ss_pred ceEEEEeeeCCCCCCCCceEEEec-ccchh
Q 047846 9 RTVVLLLRSGTRHPQEGPFGVVIN-RPLHK 37 (181)
Q Consensus 9 rSVVLi~~~~~eH~~~Ga~GlILN-rp~~~ 37 (181)
+.-|+.| +|+.. .--|+|| ||+..
T Consensus 7 KKaiv~V----~~d~R-~arllLnrRps~~ 31 (60)
T PF06613_consen 7 KKAIVQV----EHDGR-PARLLLNRRPSSE 31 (60)
T ss_dssp SSEEEEE----EETTE-EEEE-TTB--SST
T ss_pred hccEEEE----EECCc-hhhhhhccCCCcC
Confidence 4445556 58755 6789999 55653
No 10
>PF08115 Toxin_28: SFI toxin family; InterPro: IPR012633 This family consists of the SFI family of spider toxins. This family of toxins might share structural, evolutionary and functional relationships with other small, highly structurally constrained spider neurotoxins. These toxins are highly selective agonists/antagonists of different voltage-dependent calcium channels and are extremely valuable reagents in the analysis of neuromuscular function.; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=22.96 E-value=1.1e+02 Score=17.83 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=20.3
Q ss_pred ccceEEEEeeeCCCCCCCCceEEEecccch
Q 047846 7 FERTVVLLLRSGTRHPQEGPFGVVINRPLH 36 (181)
Q Consensus 7 F~rSVVLi~~~~~eH~~~Ga~GlILNrp~~ 36 (181)
-..||.||- .||..+-.-|-.|-|..
T Consensus 5 vdetvcyi~----n~n~~~G~CL~~~~~~A 30 (35)
T PF08115_consen 5 VDETVCYIH----NHNDCCGSCLCSNGPHA 30 (35)
T ss_pred ccCcEEEEe----cCCCcccceeccCCccC
Confidence 357999998 89988777777777654
Done!