BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047848
         (360 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
           From Burkholderia Thailandensis
 pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
           From Burkholderia Thailandensis
          Length = 223

 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 280 ATRKMQALQDRRACWSKGTGKKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKEYMKRF--A 337
           A R +  L  R   W   TGK        CD      L  Q  +++LR  ++ +  +  A
Sbjct: 125 ARRPLTELDRRMIEWFAPTGKPIHSLLTKCD-----KLTRQESINALRATQKSLDAYRDA 179

Query: 338 GGFDAETIQAFEELKKVGL 356
           G     T+Q F  LK+ GL
Sbjct: 180 GYAGKLTVQLFSALKRTGL 198


>pdb|2AHE|A Chain A, Crystal Structure Of A Soluble Form Of Clic4.
           Intercellular Chloride Ion Channel
          Length = 267

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 38/177 (21%)

Query: 146 LTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLI----- 200
           L RK A ++N +  T  P I F               S +KTDV K +EF+  ++     
Sbjct: 59  LKRKPADLQNLAPGTHPPFITFN--------------SEVKTDVNKIEEFLEEVLCPPKY 104

Query: 201 -------KEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAA 253
                   E  +A  D  ++  A++K    E +  + ER +LK   +  E     L +  
Sbjct: 105 LKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEAL-ERGLLKTLQKLDEYLNSPLPD-E 162

Query: 254 CNYRDLKNLEQEVSSFEDNQKESLPQAT--RKMQALQDRRACWSKGTGKKYRDFQIP 308
            +   +++++     F D  + +L       K+  +        K   KKYR+F IP
Sbjct: 163 IDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIV--------KVVAKKYRNFDIP 211


>pdb|2D2Z|A Chain A, Crystal Structure Of Soluble Form Of Clic4
 pdb|2D2Z|B Chain B, Crystal Structure Of Soluble Form Of Clic4
 pdb|2D2Z|C Chain C, Crystal Structure Of Soluble Form Of Clic4
          Length = 261

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 38/177 (21%)

Query: 146 LTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLI----- 200
           L RK A ++N +  T  P I F               S +KTDV K +EF+  ++     
Sbjct: 59  LKRKPADLQNLAPGTHPPFITFN--------------SEVKTDVNKIEEFLEEVLCPPKY 104

Query: 201 -------KEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAA 253
                   E  +A  D  ++  A++K    E +  + ER +LK   +  E     L +  
Sbjct: 105 LKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEAL-ERGLLKTLQKLDEYLNSPLPDEI 163

Query: 254 CNYRDLKNLEQEVSSFEDNQKESLPQAT--RKMQALQDRRACWSKGTGKKYRDFQIP 308
            +   +++++     F D  + +L       K+  +        K   KKYR+F IP
Sbjct: 164 -DENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIV--------KVVAKKYRNFDIP 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,476,712
Number of Sequences: 62578
Number of extensions: 353328
Number of successful extensions: 935
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 932
Number of HSP's gapped (non-prelim): 10
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)