Query 047848
Match_columns 360
No_of_seqs 137 out of 161
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:45:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1924 RhoA GTPase effector D 98.1 9.3E-06 2E-10 87.9 9.5 16 57-72 501-516 (1102)
2 KOG1924 RhoA GTPase effector D 97.8 8.2E-05 1.8E-09 80.9 9.7 43 8-50 474-519 (1102)
3 PF05308 Mito_fiss_reg: Mitoch 97.3 0.0016 3.4E-08 63.0 10.4 19 25-43 121-139 (253)
4 KOG1923 Rac1 GTPase effector F 96.0 0.014 3.1E-07 63.8 7.0 30 34-63 211-247 (830)
5 PF05308 Mito_fiss_reg: Mitoch 94.0 0.14 3E-06 49.8 6.5 11 166-176 238-248 (253)
6 KOG1925 Rac1 GTPase effector F 93.1 0.076 1.6E-06 56.4 3.4 39 82-120 225-264 (817)
7 PHA01732 proline-rich protein 93.1 0.29 6.2E-06 41.1 6.0 7 135-141 43-49 (94)
8 KOG2675 Adenylate cyclase-asso 91.7 0.1 2.3E-06 54.3 2.3 15 49-63 126-140 (480)
9 KOG1923 Rac1 GTPase effector F 91.0 1.1 2.4E-05 49.6 9.1 8 45-52 240-247 (830)
10 KOG2675 Adenylate cyclase-asso 90.2 0.36 7.7E-06 50.5 4.4 13 137-149 262-274 (480)
11 PF01213 CAP_N: Adenylate cycl 89.5 0.1 2.3E-06 52.0 0.0 14 136-149 259-272 (312)
12 KOG2391 Vacuolar sorting prote 89.2 9.2 0.0002 39.2 13.3 26 212-237 249-274 (365)
13 PRK13729 conjugal transfer pil 89.1 2.3 5E-05 45.0 9.4 41 9-49 77-120 (475)
14 COG5185 HEC1 Protein involved 88.3 6.7 0.00015 41.9 12.0 96 223-323 501-597 (622)
15 COG3883 Uncharacterized protei 86.6 2.5 5.5E-05 41.6 7.5 54 5-58 49-105 (265)
16 PF06637 PV-1: PV-1 protein (P 84.9 5.1 0.00011 41.6 8.9 7 139-145 418-424 (442)
17 PRK10884 SH3 domain-containing 84.7 2.8 6.1E-05 39.6 6.6 28 23-50 136-163 (206)
18 COG5178 PRP8 U5 snRNP spliceos 83.3 0.82 1.8E-05 53.0 2.7 25 233-258 121-145 (2365)
19 KOG3671 Actin regulatory prote 82.1 1.3 2.8E-05 47.2 3.5 7 85-91 374-380 (569)
20 PF01213 CAP_N: Adenylate cycl 81.2 0.48 1E-05 47.3 0.0 6 186-191 283-288 (312)
21 PRK10803 tol-pal system protei 80.3 6.4 0.00014 38.1 7.3 60 4-63 36-101 (263)
22 TIGR02449 conserved hypothetic 79.2 9.4 0.0002 30.3 6.6 54 10-63 2-58 (65)
23 PF02183 HALZ: Homeobox associ 77.7 8.7 0.00019 28.2 5.7 37 7-43 4-43 (45)
24 PF10146 zf-C4H2: Zinc finger- 77.3 27 0.00059 33.6 10.5 105 172-308 3-108 (230)
25 COG5178 PRP8 U5 snRNP spliceos 76.6 2 4.2E-05 50.1 2.9 8 231-238 138-145 (2365)
26 PRK02793 phi X174 lysis protei 75.1 14 0.0003 29.5 6.6 51 1-51 1-54 (72)
27 PF00170 bZIP_1: bZIP transcri 74.6 11 0.00025 28.5 5.9 34 15-48 29-62 (64)
28 PF00170 bZIP_1: bZIP transcri 73.4 14 0.0003 28.1 6.1 24 19-42 40-63 (64)
29 PF12709 Kinetocho_Slk19: Cent 72.3 13 0.00028 31.2 6.0 40 7-46 33-76 (87)
30 PF14282 FlxA: FlxA-like prote 72.0 21 0.00046 30.2 7.4 59 5-63 16-81 (106)
31 KOG3997 Major apurinic/apyrimi 71.5 10 0.00022 37.3 6.0 18 336-353 184-201 (281)
32 PRK13729 conjugal transfer pil 71.1 8 0.00017 41.1 5.6 35 312-346 360-413 (475)
33 PF01690 PLRV_ORF5: Potato lea 70.1 3.5 7.6E-05 43.5 2.8 11 215-225 213-223 (465)
34 smart00338 BRLZ basic region l 69.3 16 0.00035 27.8 5.6 28 19-46 33-60 (65)
35 PF06005 DUF904: Protein of un 69.2 21 0.00045 28.7 6.4 26 21-46 27-52 (72)
36 PF11285 DUF3086: Protein of u 69.1 21 0.00045 35.5 7.6 55 16-70 8-72 (283)
37 PF05667 DUF812: Protein of un 68.6 1.3E+02 0.0028 32.9 14.2 97 138-246 423-528 (594)
38 PHA03211 serine/threonine kina 68.5 4.3 9.4E-05 41.9 3.1 13 129-141 64-76 (461)
39 PF08172 CASP_C: CASP C termin 65.5 17 0.00036 35.4 6.2 41 12-52 83-126 (248)
40 PF03962 Mnd1: Mnd1 family; I 65.4 47 0.001 30.8 8.9 108 182-311 71-186 (188)
41 PRK14127 cell division protein 65.1 30 0.00064 30.0 7.0 40 6-45 28-70 (109)
42 PF09304 Cortex-I_coil: Cortex 64.4 37 0.0008 29.5 7.4 35 14-48 39-73 (107)
43 PRK11637 AmiB activator; Provi 64.1 26 0.00057 35.8 7.7 14 5-18 44-57 (428)
44 PF14282 FlxA: FlxA-like prote 60.5 35 0.00075 28.9 6.5 48 5-52 23-77 (106)
45 PF14389 Lzipper-MIP1: Leucine 60.5 31 0.00068 28.4 6.1 47 5-51 12-86 (88)
46 PF12718 Tropomyosin_1: Tropom 60.2 37 0.00081 30.2 7.0 30 19-48 35-64 (143)
47 PHA02562 46 endonuclease subun 60.1 2.2E+02 0.0047 29.6 16.3 16 336-351 506-521 (562)
48 PF15195 TMEM210: TMEM210 fami 59.1 5.9 0.00013 34.1 1.7 8 116-123 105-112 (116)
49 PF04102 SlyX: SlyX; InterPro 59.0 43 0.00094 26.2 6.4 44 7-50 3-49 (69)
50 smart00338 BRLZ basic region l 57.7 35 0.00077 25.9 5.6 33 20-52 27-59 (65)
51 KOG1830 Wiskott Aldrich syndro 54.9 14 0.0003 39.0 3.9 11 166-176 454-464 (518)
52 PF08006 DUF1700: Protein of u 54.3 17 0.00037 32.7 3.9 60 191-251 2-62 (181)
53 PF07106 TBPIP: Tat binding pr 54.1 32 0.0007 30.7 5.6 32 17-48 77-108 (169)
54 PF11932 DUF3450: Protein of u 53.9 45 0.00097 31.7 6.9 27 20-46 43-69 (251)
55 PRK00736 hypothetical protein; 53.7 63 0.0014 25.4 6.6 44 6-49 3-49 (68)
56 PF05377 FlaC_arch: Flagella a 53.5 36 0.00078 26.3 5.0 32 5-36 4-38 (55)
57 PF02183 HALZ: Homeobox associ 52.9 41 0.00088 24.7 5.0 36 13-48 3-41 (45)
58 TIGR02132 phaR_Bmeg polyhydrox 52.8 1.3E+02 0.0027 28.7 9.3 74 206-297 69-146 (189)
59 PRK00295 hypothetical protein; 52.8 72 0.0016 25.1 6.7 43 6-48 3-48 (68)
60 cd00632 Prefoldin_beta Prefold 52.6 48 0.001 27.5 6.1 40 12-51 63-102 (105)
61 TIGR03752 conj_TIGR03752 integ 52.4 41 0.00088 35.9 6.8 25 9-33 67-94 (472)
62 COG3074 Uncharacterized protei 51.5 68 0.0015 26.3 6.4 31 19-49 25-55 (79)
63 PF09849 DUF2076: Uncharacteri 50.6 59 0.0013 31.8 7.2 20 32-51 54-73 (247)
64 KOG0559 Dihydrolipoamide succi 49.6 61 0.0013 34.0 7.3 33 169-201 260-292 (457)
65 PF07106 TBPIP: Tat binding pr 49.5 51 0.0011 29.4 6.2 21 26-46 116-136 (169)
66 PF06156 DUF972: Protein of un 49.3 34 0.00074 29.3 4.8 26 21-46 10-35 (107)
67 PRK02119 hypothetical protein; 48.8 77 0.0017 25.3 6.4 43 6-48 7-52 (73)
68 KOG0162 Myosin class I heavy c 48.8 37 0.00081 38.5 6.0 9 55-63 906-914 (1106)
69 PRK00888 ftsB cell division pr 48.4 36 0.00078 28.9 4.7 29 19-47 34-62 (105)
70 COG4026 Uncharacterized protei 48.4 73 0.0016 31.4 7.3 44 5-48 132-178 (290)
71 PF10779 XhlA: Haemolysin XhlA 48.3 73 0.0016 24.9 6.1 44 5-48 3-49 (71)
72 PF08317 Spc7: Spc7 kinetochor 48.2 68 0.0015 31.9 7.4 46 8-53 209-264 (325)
73 PRK04406 hypothetical protein; 48.2 77 0.0017 25.5 6.4 25 21-45 27-51 (75)
74 COG4942 Membrane-bound metallo 47.6 68 0.0015 33.8 7.5 45 9-53 39-86 (420)
75 PRK14849 putative lipoprotein/ 47.4 15 0.00032 44.7 3.0 6 145-150 1502-1507(1806)
76 PF08700 Vps51: Vps51/Vps67; 47.3 98 0.0021 24.2 6.8 63 208-291 18-81 (87)
77 PRK09039 hypothetical protein; 47.1 55 0.0012 33.0 6.6 44 5-48 113-159 (343)
78 PF09304 Cortex-I_coil: Cortex 46.9 91 0.002 27.2 7.0 54 4-57 12-68 (107)
79 PF10152 DUF2360: Predicted co 46.9 2.1E+02 0.0046 25.5 9.9 27 19-45 21-47 (148)
80 PRK00888 ftsB cell division pr 46.8 40 0.00086 28.6 4.8 23 19-41 41-63 (105)
81 PLN03132 NADH dehydrogenase (u 46.6 11 0.00024 39.9 1.6 13 323-335 359-371 (461)
82 PRK14127 cell division protein 46.5 66 0.0014 27.9 6.1 48 4-51 22-69 (109)
83 PF02899 Phage_int_SAM_1: Phag 46.0 48 0.001 25.0 4.8 54 185-238 19-76 (84)
84 PF06005 DUF904: Protein of un 45.7 1.6E+02 0.0034 23.7 8.0 22 21-42 41-62 (72)
85 PRK04325 hypothetical protein; 45.6 96 0.0021 24.8 6.5 42 6-47 7-51 (74)
86 KOG1925 Rac1 GTPase effector F 45.6 25 0.00055 38.2 4.1 14 137-150 321-334 (817)
87 PF01698 FLO_LFY: Floricaula / 45.5 7 0.00015 40.5 0.0 14 185-198 109-122 (386)
88 PF04977 DivIC: Septum formati 44.8 50 0.0011 25.2 4.7 28 18-45 23-50 (80)
89 PRK15422 septal ring assembly 44.7 89 0.0019 25.9 6.3 30 19-48 25-54 (79)
90 PF11544 Spc42p: Spindle pole 44.7 71 0.0015 26.3 5.6 23 21-43 28-50 (76)
91 PRK00846 hypothetical protein; 44.4 1E+02 0.0022 25.3 6.5 42 6-47 11-55 (77)
92 PRK11637 AmiB activator; Provi 44.2 81 0.0017 32.3 7.4 13 34-46 104-116 (428)
93 PRK15422 septal ring assembly 44.2 76 0.0016 26.3 5.8 21 24-44 51-71 (79)
94 PF07716 bZIP_2: Basic region 43.7 75 0.0016 23.4 5.3 26 21-46 27-52 (54)
95 KOG4196 bZIP transcription fac 43.6 1.3E+02 0.0027 27.3 7.5 58 5-63 44-117 (135)
96 PF08826 DMPK_coil: DMPK coile 43.6 1.2E+02 0.0025 23.9 6.5 25 19-43 32-56 (61)
97 COG3883 Uncharacterized protei 43.5 68 0.0015 31.9 6.4 23 214-236 195-217 (265)
98 PF12938 M_domain: M domain of 43.2 66 0.0014 31.5 6.2 53 6-58 151-210 (235)
99 PF10018 Med4: Vitamin-D-recep 42.7 1.9E+02 0.0042 26.5 9.0 48 13-60 14-63 (188)
100 PRK13169 DNA replication intia 42.2 50 0.0011 28.6 4.7 8 35-42 24-31 (110)
101 KOG2129 Uncharacterized conser 42.2 47 0.001 35.3 5.3 36 29-67 182-217 (552)
102 PF10211 Ax_dynein_light: Axon 42.2 1E+02 0.0022 28.7 7.0 39 15-53 123-161 (189)
103 PF14688 DUF4461: Domain of un 41.8 60 0.0013 32.6 5.9 71 207-291 210-280 (313)
104 PF04977 DivIC: Septum formati 41.6 69 0.0015 24.4 5.0 20 19-38 31-50 (80)
105 PRK10884 SH3 domain-containing 41.4 81 0.0018 29.9 6.4 44 5-48 97-140 (206)
106 PF06156 DUF972: Protein of un 40.8 93 0.002 26.7 6.1 18 1-18 1-18 (107)
107 PF12312 NeA_P2: Nepovirus sub 40.8 16 0.00035 35.2 1.7 10 84-93 104-113 (258)
108 PF04111 APG6: Autophagy prote 40.7 85 0.0018 31.4 6.8 27 20-46 65-91 (314)
109 cd00890 Prefoldin Prefoldin is 40.5 94 0.002 25.8 6.1 35 14-48 89-123 (129)
110 KOG2077 JNK/SAPK-associated pr 40.3 2.6E+02 0.0057 31.2 10.6 25 131-155 506-530 (832)
111 cd00632 Prefoldin_beta Prefold 40.3 76 0.0016 26.3 5.4 33 21-53 65-97 (105)
112 KOG1922 Rho GTPase effector BN 39.6 41 0.00088 37.4 4.7 39 258-296 664-702 (833)
113 PF09755 DUF2046: Uncharacteri 39.3 57 0.0012 33.1 5.3 47 19-68 48-94 (310)
114 PF04799 Fzo_mitofusin: fzo-li 39.2 1.3E+02 0.0029 28.1 7.3 42 7-48 115-159 (171)
115 PF11932 DUF3450: Protein of u 39.1 1.1E+02 0.0025 29.0 7.1 26 21-46 72-97 (251)
116 PHA03395 p10 fibrous body prot 38.7 1.1E+02 0.0024 25.8 6.0 48 181-228 5-54 (87)
117 PRK09343 prefoldin subunit bet 38.4 1.1E+02 0.0024 26.4 6.3 27 19-45 85-111 (121)
118 PF10883 DUF2681: Protein of u 38.1 66 0.0014 27.0 4.6 30 17-46 28-57 (87)
119 PF14780 DUF4477: Domain of un 38.0 61 0.0013 29.9 4.9 113 213-340 31-153 (188)
120 PHA03211 serine/threonine kina 37.9 43 0.00093 34.7 4.3 9 230-238 209-217 (461)
121 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.9 1.1E+02 0.0023 26.5 6.2 26 24-49 96-121 (132)
122 PF08826 DMPK_coil: DMPK coile 36.9 1.1E+02 0.0024 24.0 5.5 28 21-48 27-54 (61)
123 PF15294 Leu_zip: Leucine zipp 36.6 1.1E+02 0.0023 30.7 6.6 60 4-63 193-252 (278)
124 PF13851 GAS: Growth-arrest sp 36.5 1.2E+02 0.0026 28.4 6.7 48 6-53 25-82 (201)
125 PF05103 DivIVA: DivIVA protei 36.4 35 0.00075 28.6 2.9 28 210-237 19-46 (131)
126 PF12329 TMF_DNA_bd: TATA elem 36.4 2E+02 0.0043 22.9 7.0 19 27-45 34-52 (74)
127 TIGR02338 gimC_beta prefoldin, 36.1 1E+02 0.0022 25.9 5.6 25 19-43 74-98 (110)
128 PRK05658 RNA polymerase sigma 35.9 3E+02 0.0066 29.8 10.5 138 169-323 260-421 (619)
129 PHA03247 large tegument protei 35.9 45 0.00098 42.4 4.6 24 280-303 3114-3137(3151)
130 smart00340 HALZ homeobox assoc 35.6 48 0.001 24.6 3.0 24 19-42 12-35 (44)
131 TIGR02338 gimC_beta prefoldin, 35.5 1.3E+02 0.0028 25.3 6.1 27 19-45 81-107 (110)
132 KOG1853 LIS1-interacting prote 35.4 76 0.0017 31.8 5.3 71 5-76 98-182 (333)
133 COG1382 GimC Prefoldin, chaper 35.4 99 0.0021 27.3 5.5 27 19-45 84-110 (119)
134 PF10458 Val_tRNA-synt_C: Valy 35.3 1.1E+02 0.0024 23.5 5.3 27 5-31 1-27 (66)
135 PF07334 IFP_35_N: Interferon- 35.2 61 0.0013 26.6 3.9 26 21-46 2-27 (76)
136 cd08818 CARD_MDA5_1 Caspase ac 35.1 70 0.0015 26.9 4.3 47 208-254 18-81 (88)
137 PF15290 Syntaphilin: Golgi-lo 35.1 1.2E+02 0.0026 30.7 6.7 27 6-32 87-114 (305)
138 PRK06798 fliD flagellar cappin 34.9 1.2E+02 0.0027 31.6 7.2 48 6-53 384-431 (440)
139 TIGR02894 DNA_bind_RsfA transc 34.9 1.2E+02 0.0025 28.3 6.1 27 20-46 105-131 (161)
140 PF02996 Prefoldin: Prefoldin 34.8 1.4E+02 0.0031 24.6 6.3 37 15-51 80-116 (120)
141 PF07716 bZIP_2: Basic region 34.6 82 0.0018 23.2 4.3 25 16-40 29-53 (54)
142 COG1392 Phosphate transport re 34.2 4.2E+02 0.0091 25.3 10.0 60 188-247 53-116 (217)
143 COG4942 Membrane-bound metallo 34.2 1.4E+02 0.0031 31.5 7.4 37 7-43 44-83 (420)
144 PF04111 APG6: Autophagy prote 34.0 1.6E+02 0.0034 29.5 7.5 30 19-48 57-86 (314)
145 PF01698 FLO_LFY: Floricaula / 33.9 14 0.0003 38.4 0.0 12 324-335 318-329 (386)
146 COG0621 MiaB 2-methylthioadeni 33.8 15 0.00032 38.7 0.2 103 249-355 183-321 (437)
147 PF14257 DUF4349: Domain of un 33.6 1.2E+02 0.0026 28.9 6.3 44 5-48 136-184 (262)
148 PHA03247 large tegument protei 33.5 55 0.0012 41.7 4.8 11 284-294 3111-3121(3151)
149 PF05103 DivIVA: DivIVA protei 33.1 21 0.00046 29.9 1.0 28 21-48 27-54 (131)
150 PF05377 FlaC_arch: Flagella a 33.0 1.5E+02 0.0033 23.0 5.5 25 19-43 14-38 (55)
151 PF10805 DUF2730: Protein of u 32.7 1.4E+02 0.003 25.2 5.9 26 21-46 67-92 (106)
152 COG1730 GIM5 Predicted prefold 32.7 1.5E+02 0.0033 26.8 6.5 44 5-48 91-137 (145)
153 PRK13922 rod shape-determining 32.7 84 0.0018 30.1 5.2 28 19-46 69-96 (276)
154 KOG1892 Actin filament-binding 32.7 94 0.002 36.5 6.1 41 196-238 1408-1449(1629)
155 KOG4672 Uncharacterized conser 32.4 1.1E+02 0.0024 32.5 6.2 10 54-63 102-111 (487)
156 PF15604 Toxin_43: Putative to 32.2 1.7E+02 0.0037 26.9 6.7 23 320-342 74-105 (152)
157 PF09744 Jnk-SapK_ap_N: JNK_SA 31.8 1.2E+02 0.0027 27.7 5.8 10 37-46 93-102 (158)
158 PF14197 Cep57_CLD_2: Centroso 31.7 2.4E+02 0.0053 22.4 6.8 44 6-49 3-49 (69)
159 PRK11020 hypothetical protein; 31.6 1.8E+02 0.004 25.8 6.5 58 6-63 3-68 (118)
160 TIGR00293 prefoldin, archaeal 31.4 1E+02 0.0022 26.0 4.9 39 10-48 84-122 (126)
161 TIGR02209 ftsL_broad cell divi 31.3 1.1E+02 0.0023 24.0 4.7 29 19-47 31-59 (85)
162 PF05130 FlgN: FlgN protein; 31.2 1.4E+02 0.0031 24.4 5.7 48 184-231 9-56 (143)
163 PF05531 NPV_P10: Nucleopolyhe 31.2 1.9E+02 0.0041 23.7 6.1 49 181-229 5-55 (75)
164 cd00890 Prefoldin Prefoldin is 31.0 1.2E+02 0.0027 25.1 5.3 39 7-45 89-127 (129)
165 TIGR00219 mreC rod shape-deter 30.8 92 0.002 30.6 5.1 38 19-56 66-107 (283)
166 PF04728 LPP: Lipoprotein leuc 30.6 1.7E+02 0.0038 22.7 5.5 32 16-47 7-38 (56)
167 KOG2391 Vacuolar sorting prote 30.6 2.3E+02 0.0049 29.5 7.9 36 14-49 234-269 (365)
168 KOG0559 Dihydrolipoamide succi 30.4 76 0.0016 33.3 4.6 19 203-221 254-272 (457)
169 PF09726 Macoilin: Transmembra 30.2 79 0.0017 35.2 5.0 42 6-47 423-481 (697)
170 PF11471 Sugarporin_N: Maltopo 29.8 1.2E+02 0.0025 23.7 4.5 29 17-45 30-58 (60)
171 PF12718 Tropomyosin_1: Tropom 29.8 2.2E+02 0.0047 25.4 6.9 10 23-32 18-27 (143)
172 PF05791 Bacillus_HBL: Bacillu 29.3 86 0.0019 28.8 4.4 66 183-252 113-178 (184)
173 PF08581 Tup_N: Tup N-terminal 29.3 2E+02 0.0044 23.5 6.1 29 33-61 39-67 (79)
174 PTZ00454 26S protease regulato 29.2 1E+02 0.0022 31.8 5.3 28 19-46 36-63 (398)
175 PF14208 DUF4320: Domain of un 29.2 96 0.0021 27.0 4.4 30 326-355 25-57 (116)
176 KOG0250 DNA repair protein RAD 29.1 1.7E+02 0.0036 34.4 7.4 61 3-63 656-719 (1074)
177 PF03960 ArsC: ArsC family; I 29.1 12 0.00025 31.1 -1.2 85 257-348 16-110 (110)
178 PF04201 TPD52: Tumour protein 28.9 1.6E+02 0.0034 27.5 5.9 35 19-53 29-63 (162)
179 PF08472 S6PP_C: Sucrose-6-pho 28.7 1.4 3E-05 39.5 -7.1 69 173-242 39-115 (133)
180 CHL00171 cpcB phycocyanin beta 28.6 37 0.00081 31.4 1.9 30 300-331 115-144 (172)
181 KOG4672 Uncharacterized conser 28.6 1.2E+02 0.0025 32.4 5.6 17 195-211 262-278 (487)
182 CHL00172 cpeB phycoerythrin be 28.5 34 0.00073 32.0 1.6 30 300-331 115-144 (177)
183 PF12711 Kinesin-relat_1: Kine 28.5 2.1E+02 0.0046 23.9 6.1 11 8-18 31-41 (86)
184 PF04108 APG17: Autophagy prot 28.5 4.1E+02 0.0089 27.4 9.6 98 137-238 206-323 (412)
185 PF04899 MbeD_MobD: MbeD/MobD 28.2 2.2E+02 0.0048 22.9 6.0 9 10-18 12-20 (70)
186 COG1579 Zn-ribbon protein, pos 28.0 2.2E+02 0.0049 27.8 7.2 14 137-150 174-187 (239)
187 PRK14954 DNA polymerase III su 27.9 3.1E+02 0.0067 30.2 8.9 9 264-272 567-575 (620)
188 PF11598 COMP: Cartilage oligo 27.7 1.9E+02 0.0041 21.5 5.1 37 169-205 4-40 (45)
189 PF00261 Tropomyosin: Tropomyo 27.7 2.8E+02 0.006 26.3 7.7 22 22-43 193-214 (237)
190 cd04444 DEP_PLEK2 DEP (Disheve 27.6 14 0.00031 32.0 -0.9 26 309-335 38-63 (109)
191 PF01920 Prefoldin_2: Prefoldi 27.6 2E+02 0.0044 22.9 5.9 25 19-43 76-100 (106)
192 smart00787 Spc7 Spc7 kinetocho 27.5 2.4E+02 0.0052 28.4 7.5 33 21-53 227-259 (312)
193 PF11544 Spc42p: Spindle pole 27.4 1.2E+02 0.0025 25.1 4.3 40 21-61 7-46 (76)
194 PF07798 DUF1640: Protein of u 27.4 2.2E+02 0.0048 25.8 6.7 12 52-63 121-132 (177)
195 PF03978 Borrelia_REV: Borreli 27.0 2.8E+02 0.0062 25.8 7.2 26 7-32 53-79 (160)
196 KOG0035 Ca2+-binding actin-bun 26.9 1E+02 0.0022 35.4 5.2 77 170-246 744-839 (890)
197 PF04102 SlyX: SlyX; InterPro 26.8 1.9E+02 0.0041 22.6 5.3 26 18-43 3-28 (69)
198 PF06008 Laminin_I: Laminin Do 26.5 5.7E+02 0.012 24.4 13.9 83 167-258 131-217 (264)
199 PRK13169 DNA replication intia 26.5 1.7E+02 0.0038 25.3 5.5 13 5-17 5-17 (110)
200 PF10224 DUF2205: Predicted co 26.3 2.4E+02 0.0053 23.2 6.1 11 8-18 23-33 (80)
201 KOG1945 Protein phosphatase 1 26.2 51 0.0011 34.2 2.5 7 245-251 305-311 (377)
202 PF03586 Herpes_UL36: Herpesvi 26.1 3.1E+02 0.0068 27.2 7.8 89 192-292 139-240 (253)
203 PRK09039 hypothetical protein; 26.1 2.3E+02 0.0049 28.7 7.1 10 133-142 290-299 (343)
204 TIGR01339 phycocy_beta phycocy 26.0 42 0.0009 31.2 1.7 29 300-330 113-141 (170)
205 PF04012 PspA_IM30: PspA/IM30 25.8 2E+02 0.0044 26.5 6.2 25 22-46 101-125 (221)
206 PF11365 DUF3166: Protein of u 25.8 2E+02 0.0043 24.6 5.6 39 5-43 5-46 (96)
207 KOG3119 Basic region leucine z 25.8 1.6E+02 0.0035 28.8 5.8 33 19-51 222-254 (269)
208 PF12329 TMF_DNA_bd: TATA elem 25.7 2.6E+02 0.0056 22.3 6.0 18 16-33 9-26 (74)
209 COG2900 SlyX Uncharacterized p 25.4 3.8E+02 0.0082 21.9 7.6 39 5-43 5-46 (72)
210 PF06428 Sec2p: GDP/GTP exchan 25.3 53 0.0012 28.0 2.1 30 24-53 49-78 (100)
211 PF04999 FtsL: Cell division p 25.3 1.8E+02 0.0038 23.6 5.1 35 18-52 41-76 (97)
212 PF02388 FemAB: FemAB family; 25.1 2.4E+02 0.0052 28.9 7.2 25 30-54 270-294 (406)
213 PF10046 BLOC1_2: Biogenesis o 25.1 2.8E+02 0.0061 23.0 6.4 49 214-272 5-53 (99)
214 smart00806 AIP3 Actin interact 25.1 8.6E+02 0.019 26.0 12.6 33 208-240 263-303 (426)
215 PF12830 Nipped-B_C: Sister ch 25.1 1.4E+02 0.0029 27.3 4.9 37 188-224 150-186 (187)
216 KOG0971 Microtubule-associated 24.9 1.6E+02 0.0034 34.4 6.1 41 8-48 396-439 (1243)
217 PF05478 Prominin: Prominin; 24.9 4E+02 0.0087 29.9 9.4 88 256-355 644-742 (806)
218 PF03962 Mnd1: Mnd1 family; I 24.8 3.5E+02 0.0075 25.2 7.6 22 26-47 110-131 (188)
219 COG3028 Uncharacterized protei 24.8 2E+02 0.0043 27.3 5.8 75 222-299 43-127 (187)
220 TIGR03689 pup_AAA proteasome A 24.7 1.2E+02 0.0025 32.7 5.0 32 318-349 439-472 (512)
221 TIGR00996 Mtu_fam_mce virulenc 24.7 6.1E+02 0.013 24.1 12.1 29 210-238 207-235 (291)
222 KOG1830 Wiskott Aldrich syndro 24.7 82 0.0018 33.6 3.7 12 177-188 455-466 (518)
223 PRK03947 prefoldin subunit alp 24.7 2.5E+02 0.0054 24.2 6.2 28 19-46 108-135 (140)
224 KOG1760 Molecular chaperone Pr 24.6 2.9E+02 0.0062 25.0 6.5 45 19-63 81-125 (131)
225 PF07888 CALCOCO1: Calcium bin 24.6 4.7E+02 0.01 28.7 9.4 23 21-43 433-455 (546)
226 CHL00090 apcD allophycocyanin 24.5 43 0.00092 30.6 1.5 27 300-328 114-140 (161)
227 TIGR02209 ftsL_broad cell divi 24.4 1.6E+02 0.0036 22.9 4.7 33 21-53 26-58 (85)
228 PF09738 DUF2051: Double stran 24.3 2.3E+02 0.005 28.6 6.7 51 6-56 82-135 (302)
229 PF13815 Dzip-like_N: Iguana/D 24.3 2.6E+02 0.0056 23.8 6.2 26 17-42 78-103 (118)
230 TIGR02894 DNA_bind_RsfA transc 24.2 3.5E+02 0.0076 25.2 7.3 25 23-47 101-125 (161)
231 CHL00089 apcF allophycocyanin 23.9 44 0.00095 30.9 1.5 29 300-330 115-143 (169)
232 PF06810 Phage_GP20: Phage min 23.9 2.5E+02 0.0053 25.4 6.2 17 34-50 52-68 (155)
233 PF03915 AIP3: Actin interacti 23.7 1.8E+02 0.0039 30.7 6.0 139 109-251 119-306 (424)
234 TIGR00293 prefoldin, archaeal 23.6 1.5E+02 0.0033 24.9 4.6 32 22-53 2-33 (126)
235 cd00584 Prefoldin_alpha Prefol 23.5 2.6E+02 0.0057 23.6 6.1 35 14-48 89-123 (129)
236 PF13794 MiaE_2: tRNA-(MS[2]IO 23.3 4.6E+02 0.0099 24.8 8.0 101 228-351 25-125 (185)
237 PF02074 Peptidase_M32: Carbox 23.3 3.8E+02 0.0081 28.8 8.4 34 316-349 172-213 (494)
238 PRK00766 hypothetical protein; 23.3 40 0.00087 31.8 1.1 23 230-253 114-136 (194)
239 PF06632 XRCC4: DNA double-str 23.2 3.4E+02 0.0073 27.8 7.7 31 15-45 140-170 (342)
240 PF00261 Tropomyosin: Tropomyo 22.9 2.7E+02 0.0059 26.3 6.6 28 19-46 134-161 (237)
241 PF04728 LPP: Lipoprotein leuc 22.8 2E+02 0.0043 22.4 4.6 29 21-49 5-33 (56)
242 PRK09343 prefoldin subunit bet 22.8 2.4E+02 0.0053 24.3 5.8 40 22-61 74-113 (121)
243 PF07307 HEPPP_synt_1: Heptapr 22.8 3E+02 0.0065 26.4 6.8 79 195-284 105-183 (212)
244 PF08317 Spc7: Spc7 kinetochor 22.5 3.8E+02 0.0082 26.7 7.8 23 220-242 273-295 (325)
245 PF06810 Phage_GP20: Phage min 22.5 2.6E+02 0.0057 25.2 6.2 11 8-18 27-37 (155)
246 PF01486 K-box: K-box region; 22.3 3.4E+02 0.0073 22.2 6.3 40 9-48 50-90 (100)
247 PF10046 BLOC1_2: Biogenesis o 22.3 4.6E+02 0.0099 21.8 7.6 17 32-48 65-81 (99)
248 PRK11530 hypothetical protein; 22.2 1.1E+02 0.0023 29.1 3.6 31 26-56 24-56 (183)
249 PRK15313 autotransport protein 22.1 91 0.002 36.1 3.7 9 181-189 704-712 (955)
250 PF13864 Enkurin: Calmodulin-b 22.1 2.4E+02 0.0053 23.2 5.4 12 32-43 80-91 (98)
251 PF04880 NUDE_C: NUDE protein, 22.0 54 0.0012 30.4 1.6 35 6-42 19-53 (166)
252 PF11712 Vma12: Endoplasmic re 21.9 3.1E+02 0.0067 24.0 6.3 16 136-151 21-36 (142)
253 COG4026 Uncharacterized protei 21.9 2.2E+02 0.0047 28.3 5.8 12 137-148 262-273 (290)
254 PF04568 IATP: Mitochondrial A 21.8 2E+02 0.0044 24.6 5.0 29 8-36 72-100 (100)
255 KOG4603 TBP-1 interacting prot 21.8 1.8E+02 0.0039 27.7 5.0 45 17-63 84-128 (201)
256 PF06840 DUF1241: Protein of u 21.7 1.3E+02 0.0028 27.7 4.0 20 169-188 106-125 (154)
257 PF05278 PEARLI-4: Arabidopsis 21.7 8.1E+02 0.017 24.6 9.7 15 316-330 235-249 (269)
258 CHL00088 apcB allophycocyanin 21.7 52 0.0011 30.1 1.5 27 300-328 114-140 (161)
259 KOG4603 TBP-1 interacting prot 21.6 2.6E+02 0.0057 26.6 6.0 43 21-63 118-174 (201)
260 PRK03947 prefoldin subunit alp 21.5 3.2E+02 0.007 23.5 6.3 43 10-52 92-134 (140)
261 PF13863 DUF4200: Domain of un 21.5 3.9E+02 0.0085 22.2 6.7 32 21-52 76-107 (126)
262 PF07407 Seadorna_VP6: Seadorn 21.4 1.1E+02 0.0023 31.8 3.7 29 20-48 33-61 (420)
263 PF05531 NPV_P10: Nucleopolyhe 21.4 2.9E+02 0.0063 22.7 5.5 26 31-56 40-65 (75)
264 KOG3335 Predicted coiled-coil 21.3 1.6E+02 0.0035 27.9 4.6 28 19-46 106-133 (181)
265 cd07621 BAR_SNX5_6 The Bin/Amp 21.3 4.1E+02 0.009 25.6 7.5 67 220-293 25-95 (219)
266 PRK14950 DNA polymerase III su 21.2 2.6E+02 0.0057 30.1 6.8 32 168-202 460-491 (585)
267 COG1792 MreC Cell shape-determ 21.2 1.3E+02 0.0029 29.6 4.3 42 21-67 68-112 (284)
268 PF07352 Phage_Mu_Gam: Bacteri 21.1 3E+02 0.0065 24.3 6.1 46 6-51 8-57 (149)
269 CHL00086 apcA allophycocyanin 21.0 54 0.0012 30.0 1.4 27 300-328 114-140 (161)
270 PF09340 NuA4: Histone acetylt 20.9 1.8E+02 0.0039 23.7 4.3 28 22-49 5-32 (80)
271 KOG4005 Transcription factor X 20.7 2.1E+02 0.0045 28.6 5.4 14 30-43 129-142 (292)
272 TIGR02977 phageshock_pspA phag 20.7 3.5E+02 0.0077 25.3 6.8 35 19-53 99-133 (219)
273 PF06698 DUF1192: Protein of u 20.6 2.6E+02 0.0056 21.9 4.9 33 15-47 24-56 (59)
274 PRK13922 rod shape-determining 20.6 1.8E+02 0.0039 27.8 5.0 22 15-36 72-93 (276)
275 PF07798 DUF1640: Protein of u 20.6 3.1E+02 0.0067 24.9 6.3 8 21-28 60-67 (177)
276 TIGR00998 8a0101 efflux pump m 20.5 3.7E+02 0.008 25.8 7.1 42 6-47 78-122 (334)
277 PF13600 DUF4140: N-terminal d 20.5 2.2E+02 0.0047 23.2 4.8 26 21-46 72-97 (104)
278 TIGR03185 DNA_S_dndD DNA sulfu 20.5 3.2E+02 0.0069 29.7 7.3 54 5-58 402-460 (650)
279 PF09763 Sec3_C: Exocyst compl 20.5 4.5E+02 0.0098 28.8 8.5 43 315-357 215-261 (701)
280 KOG4010 Coiled-coil protein TP 20.4 2.9E+02 0.0062 26.6 6.1 35 19-53 44-78 (208)
No 1
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=9.3e-06 Score=87.93 Aligned_cols=16 Identities=6% Similarity=0.057 Sum_probs=7.2
Q ss_pred HHHhhCCCCCCCCCCc
Q 047848 57 WKKLQNPNTDTSPQKQ 72 (360)
Q Consensus 57 ~Kkiq~~~~~~~~~~~ 72 (360)
..||+.+-+++...+.
T Consensus 501 e~Ki~~l~ae~~al~s 516 (1102)
T KOG1924|consen 501 EEKIKLLEAEKQALSS 516 (1102)
T ss_pred hhhcccCchhhhhccC
Confidence 3445555444444333
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.82 E-value=8.2e-05 Score=80.87 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=29.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047848 8 SRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDN 50 (360)
Q Consensus 8 ~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~ 50 (360)
.+-.++.++++ ..-++.+.|.+++++.|..+++.+++|.++..
T Consensus 474 qkA~e~~kk~~ke~ta~qe~qael~k~e~Ki~~l~ae~~al~s~~~ 519 (1102)
T KOG1924|consen 474 QKAAELEKKFDKELTARQEAQAELQKHEEKIKLLEAEKQALSSPSQ 519 (1102)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhhhcccCchhhhhccCccc
Confidence 34455666666 34677777777777777777777777776654
No 3
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=97.34 E-value=0.0016 Score=62.99 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047848 25 EKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 25 e~EnkkLeQel~~LksQI~ 43 (360)
.+++.-|+.||..|++||.
T Consensus 121 lqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIA 139 (253)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666
No 4
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.03 E-value=0.014 Score=63.76 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhhh-------hhhhhhHHHHHhhCC
Q 047848 34 EVLRLKAQISSLKAH-------DNERKSMLWKKLQNP 63 (360)
Q Consensus 34 el~~LksQI~sL~~q-------~~erqs~l~Kkiq~~ 63 (360)
....+..+++.+.-. .-.+++.+..+|..+
T Consensus 211 ~~~~~~dels~m~k~~~~~e~~lk~~~~~l~~ki~em 247 (830)
T KOG1923|consen 211 QRKALLDELSCMQKLSIEKERSLKAIARLLETKIGEM 247 (830)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 455566666655533 223344455555554
No 5
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=93.97 E-value=0.14 Score=49.77 Aligned_cols=11 Identities=0% Similarity=0.184 Sum_probs=6.9
Q ss_pred hhhhhHHHHHh
Q 047848 166 AFTRNMIGEIE 176 (360)
Q Consensus 166 ~~~~~iLgEIe 176 (360)
.+|-+||+.|.
T Consensus 238 PnMldVLKDmn 248 (253)
T PF05308_consen 238 PNMLDVLKDMN 248 (253)
T ss_pred ccHHHHHHhhh
Confidence 45566777664
No 6
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=93.14 E-value=0.076 Score=56.45 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=24.9
Q ss_pred ccCCCCCCCCCCCCcccccc-cccccCCCCCCCCCCCCCC
Q 047848 82 QNLDGETFRPRPGFQELEAG-KERSMKIQTPVAFPAPPPP 120 (360)
Q Consensus 82 ~~~~~~~p~p~p~~~~~~~~-~~~~~~~~~~~~~pppppp 120 (360)
..+..|.|||+|+..|+... ..|+++|||.++-||||||
T Consensus 225 ~~~~~P~~P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~ 264 (817)
T KOG1925|consen 225 PEPKEPLIPASPKELPTRDFLLSGVPPPPPKGPFPPPPPL 264 (817)
T ss_pred CCCCCCCCCCChhccCCchhhhcCCCCCCCCCCCCCCCCC
Confidence 34666777777766665443 6688777776666555554
No 7
>PHA01732 proline-rich protein
Probab=93.06 E-value=0.29 Score=41.08 Aligned_cols=7 Identities=29% Similarity=0.667 Sum_probs=3.1
Q ss_pred chHHHHH
Q 047848 135 RVPEVVE 141 (360)
Q Consensus 135 RspeVVe 141 (360)
-+|.|-+
T Consensus 43 ~apki~~ 49 (94)
T PHA01732 43 EAPKIRE 49 (94)
T ss_pred chhHHHH
Confidence 3444443
No 8
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=91.75 E-value=0.1 Score=54.28 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=9.1
Q ss_pred hhhhhhHHHHHhhCC
Q 047848 49 DNERKSMLWKKLQNP 63 (360)
Q Consensus 49 ~~erqs~l~Kkiq~~ 63 (360)
...|+|++|-.|--+
T Consensus 126 E~nRkS~~FNhLsav 140 (480)
T KOG2675|consen 126 EKNRKSPFFNHLSAV 140 (480)
T ss_pred hcccCchHHHHHHHH
Confidence 555667777666443
No 9
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=90.96 E-value=1.1 Score=49.64 Aligned_cols=8 Identities=25% Similarity=0.206 Sum_probs=3.1
Q ss_pred hhhhhhhh
Q 047848 45 LKAHDNER 52 (360)
Q Consensus 45 L~~q~~er 52 (360)
|+..++|-
T Consensus 240 l~~ki~em 247 (830)
T KOG1923|consen 240 LETKIGEM 247 (830)
T ss_pred ccCCcccc
Confidence 33334433
No 10
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=90.19 E-value=0.36 Score=50.48 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhh
Q 047848 137 PEVVELYRSLTRK 149 (360)
Q Consensus 137 peVVelY~sLkkk 149 (360)
..+..+|..|...
T Consensus 262 ~~~~AlFaqlNqG 274 (480)
T KOG2675|consen 262 GGRGALFAQLNQG 274 (480)
T ss_pred ccHHHHHHHHhcc
Confidence 4455566665543
No 11
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=89.54 E-value=0.1 Score=51.99 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhh
Q 047848 136 VPEVVELYRSLTRK 149 (360)
Q Consensus 136 speVVelY~sLkkk 149 (360)
.+.+..+|-.|.+.
T Consensus 259 ~~~~~AlFaeLN~G 272 (312)
T PF01213_consen 259 SGGMSALFAELNQG 272 (312)
T ss_dssp --------------
T ss_pred cccHHHHHHHHhcc
Confidence 46667777777553
No 12
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.21 E-value=9.2 Score=39.20 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=12.7
Q ss_pred HHHHHHHHhhHHHhhhhhhhHHhhhh
Q 047848 212 SEVEAFVKWLDGELSSLVDERAVLKH 237 (360)
Q Consensus 212 ~~v~~Fv~wld~eLs~L~DEraVLk~ 237 (360)
.++++-+.-||+++.+|---..||+.
T Consensus 249 ~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 249 QKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444455555555555555543
No 13
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=89.06 E-value=2.3 Score=44.96 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 9 RIDSFQKERDARIALLE---KENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 9 eI~~LKkeLds~n~eLe---~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
...+|+++|+.+.++++ .+++.+++.|+++++++..|+.|.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44566666665555555 666677777777777777776664
No 14
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=88.26 E-value=6.7 Score=41.91 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHhhhhhhh-HHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhhcchhhhhh
Q 047848 223 GELSSLVDE-RAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKK 301 (360)
Q Consensus 223 ~eLs~L~DE-raVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er~rd~~~~r 301 (360)
++|..|.+| ..|++.| -..|-.+=|+-...--..++||.|+...+......+-++=.++++.==+++++.... .
T Consensus 501 ~~l~~~e~~L~~a~s~~---~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~~--n 575 (622)
T COG5185 501 QILEKLELELSEANSKF---ELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVDL--N 575 (622)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHHH--H
Confidence 333444443 2355555 367777888888888889999999998877666666555444444332333333221 1
Q ss_pred hhccCCCccccccchhhHHHHH
Q 047848 302 YRDFQIPCDWMMDSGLIGQMKV 323 (360)
Q Consensus 302 yk~~~Ip~~wmld~gii~kiK~ 323 (360)
|+.++|+-.-.---|+++++|.
T Consensus 576 ~~r~~i~k~V~~v~~~~~~fk~ 597 (622)
T COG5185 576 RKRYKIHKQVIHVIDITSKFKI 597 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 2223333221112367777775
No 15
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.62 E-value=2.5 Score=41.61 Aligned_cols=54 Identities=28% Similarity=0.406 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWK 58 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~K 58 (360)
++..+|..|-.+.+ ..+++++.++.++.++++.|+.+|..++..|.+|+..+-+
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655 5578888889999999999999999999999999866655
No 16
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=84.87 E-value=5.1 Score=41.62 Aligned_cols=7 Identities=29% Similarity=0.377 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 047848 139 VVELYRS 145 (360)
Q Consensus 139 VVelY~s 145 (360)
+-||-+.
T Consensus 418 leefkrr 424 (442)
T PF06637_consen 418 LEEFKRR 424 (442)
T ss_pred HHHHHHH
Confidence 3444333
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.67 E-value=2.8 Score=39.59 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047848 23 LLEKENFELRQEVLRLKAQISSLKAHDN 50 (360)
Q Consensus 23 eLe~EnkkLeQel~~LksQI~sL~~q~~ 50 (360)
+|+++|++|.+++..+++++..|+.++.
T Consensus 136 ~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 136 GLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666665555533
No 18
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=83.26 E-value=0.82 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=14.9
Q ss_pred HhhhhCCCCCcchhhHHHHhhhhhhh
Q 047848 233 AVLKHFPQWPERKADTLREAACNYRD 258 (360)
Q Consensus 233 aVLk~F~~wPe~K~dalReAa~~y~~ 258 (360)
+||+-+++-|.. ++-.++.-++|.+
T Consensus 121 avlkLLeNmP~p-We~~~evkvlyh~ 145 (2365)
T COG5178 121 AVLKLLENMPSP-WEDVSEVKVLYHC 145 (2365)
T ss_pred HHHHHHhcCCCh-HhhhheeeEEeec
Confidence 566666666543 4445666666665
No 19
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=82.06 E-value=1.3 Score=47.17 Aligned_cols=7 Identities=14% Similarity=0.031 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 047848 85 DGETFRP 91 (360)
Q Consensus 85 ~~~~p~p 91 (360)
+.|+|||
T Consensus 374 r~PPPpp 380 (569)
T KOG3671|consen 374 RPPPPPP 380 (569)
T ss_pred CCCcCCC
Confidence 3333333
No 20
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=81.19 E-value=0.48 Score=47.35 Aligned_cols=6 Identities=17% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHH
Q 047848 186 KTDVKK 191 (360)
Q Consensus 186 k~Dve~ 191 (360)
-.|-+|
T Consensus 283 ~~~~~T 288 (312)
T PF01213_consen 283 TKDMMT 288 (312)
T ss_dssp ------
T ss_pred Ccchhc
Confidence 333333
No 21
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=80.25 E-value=6.4 Score=38.11 Aligned_cols=60 Identities=13% Similarity=0.283 Sum_probs=50.3
Q ss_pred CchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHhhCC
Q 047848 4 EDDDSRIDSFQKERDAR---IALLEKENFELRQEVLRLKAQISSLK---AHDNERKSMLWKKLQNP 63 (360)
Q Consensus 4 gd~e~eI~~LKkeLds~---n~eLe~EnkkLeQel~~LksQI~sL~---~q~~erqs~l~Kkiq~~ 63 (360)
|..+..|..|+..++.+ .-+|+.++..|++|+.+|..+|..+. .+..+||.-+.-+|.+.
T Consensus 36 ~~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 36 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888999888833 56899999999999999999999887 44888998888888775
No 22
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=79.15 E-value=9.4 Score=30.32 Aligned_cols=54 Identities=11% Similarity=0.171 Sum_probs=41.7
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 10 IDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 10 I~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
+..|..+++ .+-++|+.+|..|.++++.+.++=..|...+-...+....=|..+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RL 58 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRL 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556777777 668899999999999999998888888877666666666655554
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.72 E-value=8.7 Score=28.23 Aligned_cols=37 Identities=35% Similarity=0.472 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
|.....|+..+| +.+..|..+|..|..++..|+.++.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445556666666 4466666666666666666666553
No 24
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.26 E-value=27 Score=33.65 Aligned_cols=105 Identities=22% Similarity=0.330 Sum_probs=65.8
Q ss_pred HHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHH
Q 047848 172 IGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLRE 251 (360)
Q Consensus 172 LgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalRe 251 (360)
|+||.+.-..|..++.+| ..++.. ++....|+.-+..|...|.+||.=+ ++.||.
T Consensus 3 i~~ir~K~~~lek~k~~i----------~~e~~~-----~e~ee~~L~e~~kE~~~L~~Er~~h----------~eeLrq 57 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEI----------LQEVES-----LENEEKCLEEYRKEMEELLQERMAH----------VEELRQ 57 (230)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 555555555555555444 444443 3455578888889999999998543 356999
Q ss_pred hhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhhcchhhhhhhhc-cCCC
Q 047848 252 AACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRD-FQIP 308 (360)
Q Consensus 252 Aa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er~rd~~~~ryk~-~~Ip 308 (360)
....+..|..+. ++-..+ +....+.+..+.+-+.++++++-..=++ +|++
T Consensus 58 I~~DIn~lE~iI---kqa~~e----r~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~ 108 (230)
T PF10146_consen 58 INQDINTLENII---KQAESE----RNKRQEKIQRLYEEYKPLKDEINELRKEYLGLE 108 (230)
T ss_pred HHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 988777665554 433333 5666677777766655666655555555 5554
No 25
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=76.58 E-value=2 Score=50.08 Aligned_cols=8 Identities=50% Similarity=0.488 Sum_probs=3.4
Q ss_pred hHHhhhhC
Q 047848 231 ERAVLKHF 238 (360)
Q Consensus 231 EraVLk~F 238 (360)
|--||-|+
T Consensus 138 evkvlyh~ 145 (2365)
T COG5178 138 EVKVLYHC 145 (2365)
T ss_pred eeeEEeec
Confidence 33444444
No 26
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.09 E-value=14 Score=29.51 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=34.5
Q ss_pred CCCCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 1 MAPEDDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 1 ~~~gd~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
|...+.+..|..|+.++- ..+++|.+-.-+.+++|..|..++..|..+..+
T Consensus 1 m~~~~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 1 MQDSSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777877777765 557777777777777777777777766554433
No 27
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=74.63 E-value=11 Score=28.55 Aligned_cols=34 Identities=41% Similarity=0.579 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
..|+.....|+.+|..|..++..|+.++.+|..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555556666666666666666666655543
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=73.37 E-value=14 Score=28.09 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 19 ARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI 42 (360)
..|..|..++..|.+++..|++++
T Consensus 40 ~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 40 SENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555555555555543
No 29
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=72.26 E-value=13 Score=31.23 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 7 DSRIDSFQKERD----ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 7 e~eI~~LKkeLd----s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+..|..||+-++ .++.+|+.++..|.+++.+|+.++..-.
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788886666 7789999999999999999998887433
No 30
>PF14282 FlxA: FlxA-like protein
Probab=71.97 E-value=21 Score=30.17 Aligned_cols=59 Identities=25% Similarity=0.249 Sum_probs=36.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 5 DDDSRIDSFQKERDARIALLEKE-------NFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~E-------nkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
...+.|..|++++..+.++|..- .+...+.+..|.+||..|++|+.++|.-.-+.-+..
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667777777666433333221 123346777888888888888888876665554443
No 31
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=71.53 E-value=10 Score=37.27 Aligned_cols=18 Identities=50% Similarity=0.846 Sum_probs=16.2
Q ss_pred hcCCCCHHHHHHHHHHHh
Q 047848 336 FAGGFDAETIQAFEELKK 353 (360)
Q Consensus 336 faggfd~e~~~afeelr~ 353 (360)
||+|||--|-++|+|+=+
T Consensus 184 FaaGyDI~Tee~y~evmk 201 (281)
T KOG3997|consen 184 FAAGYDIRTEEAYEEVMK 201 (281)
T ss_pred hccccccchHHHHHHHHH
Confidence 999999999999998744
No 32
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=71.08 E-value=8 Score=41.07 Aligned_cols=35 Identities=31% Similarity=0.599 Sum_probs=26.2
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH-------------------hcCCCCHHHHH
Q 047848 312 MMDSGLIGQMKVSSLRLAKEYMKR-------------------FAGGFDAETIQ 346 (360)
Q Consensus 312 mld~gii~kiK~asv~la~~ymkr-------------------faggfd~e~~~ 346 (360)
++-+|+-+=+=-+.=+||.=|||| |--||.-++.+
T Consensus 360 i~~~g~g~G~s~aa~~LadyYik~Aeq~~PVIEi~aGr~V~iVf~kGf~L~~~~ 413 (475)
T PRK13729 360 VLKMGIGGGASKAAQTLSDYYIKRAEQYHPVIPIGAGNEVTVVFQDGFQLKTIE 413 (475)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHhCCeEEeCCCCEEEEEEeCCeecccHH
Confidence 444566666777888999999999 88888766653
No 33
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=70.07 E-value=3.5 Score=43.54 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=4.9
Q ss_pred HHHHHhhHHHh
Q 047848 215 EAFVKWLDGEL 225 (360)
Q Consensus 215 ~~Fv~wld~eL 225 (360)
|.+=.|.|.-+
T Consensus 213 VSYG~~Tdk~m 223 (465)
T PF01690_consen 213 VSYGGYTDKDM 223 (465)
T ss_pred EEeccccccce
Confidence 33444555443
No 34
>smart00338 BRLZ basic region leucin zipper.
Probab=69.27 E-value=16 Score=27.76 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
...+.|+.+|..|..++..|..++..|.
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555544444
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.25 E-value=21 Score=28.66 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+.+|+.+|..|.++...|+.+...|+
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 36
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=69.06 E-value=21 Score=35.53 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhh--hhh-----hhhHHHHHhhCC--CCCCCCC
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQIS-SLKAH--DNE-----RKSMLWKKLQNP--NTDTSPQ 70 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI~-sL~~q--~~e-----rqs~l~Kkiq~~--~~~~~~~ 70 (360)
+|+.+.+.|+.+.++|++.-.+++.++. ++-++ ++- -|.-|.-.||.| .++.++.
T Consensus 8 eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~RVqGFkdYLvGsLQDLa~saEqLeL 72 (283)
T PF11285_consen 8 ELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAIRVQGFKDYLVGSLQDLAQSAEQLEL 72 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Confidence 3444555555555555554455554544 33332 332 344555668888 6677776
No 37
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.56 E-value=1.3e+02 Score=32.95 Aligned_cols=97 Identities=24% Similarity=0.355 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhhhccccCCCCCCCchhhhhhhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhh--------hccc
Q 047848 138 EVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVES--------AVFD 209 (360)
Q Consensus 138 eVVelY~sLkkk~~k~d~~~~s~gk~~~~~~~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~--------~~~~ 209 (360)
.+++-|+.|+........ .....+.||++=-.-..+|.++++.+-+.+..|..++.. +=+.
T Consensus 423 pL~~e~r~lk~~~~~~~~-----------e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~ 491 (594)
T PF05667_consen 423 PLIEEYRRLKEKASNRES-----------ESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTR 491 (594)
T ss_pred HHHHHHHHHHHHHhhcch-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 467788888876653321 122344555554455555666666666666666655532 2244
Q ss_pred ChHHHHHHHHhhHHHhhh-hhhhHHhhhhCCCCCcchh
Q 047848 210 QISEVEAFVKWLDGELSS-LVDERAVLKHFPQWPERKA 246 (360)
Q Consensus 210 d~~~v~~Fv~wld~eLs~-L~DEraVLk~F~~wPe~K~ 246 (360)
.|-|+++.++.=+.++.. |.|=|.|-+.. ++=+.|+
T Consensus 492 RIlEIv~NI~KQk~eI~KIl~DTr~lQkei-N~l~gkL 528 (594)
T PF05667_consen 492 RILEIVKNIRKQKEEIEKILSDTRELQKEI-NSLTGKL 528 (594)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 566777777777777776 55555555544 4444444
No 38
>PHA03211 serine/threonine kinase US3; Provisional
Probab=68.47 E-value=4.3 Score=41.90 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=8.5
Q ss_pred CCccccchHHHHH
Q 047848 129 GSKTVRRVPEVVE 141 (360)
Q Consensus 129 ~~~~vrRspeVVe 141 (360)
.+..+.++-|+..
T Consensus 64 ~~~~~~~~~~~~~ 76 (461)
T PHA03211 64 EAARLCQIQELLA 76 (461)
T ss_pred HHHHHHHHHHHHH
Confidence 4556777777773
No 39
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.52 E-value=17 Score=35.38 Aligned_cols=41 Identities=29% Similarity=0.353 Sum_probs=35.1
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 12 SFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 12 ~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
=+..+-| .+|.||++|+.++.+++..|+++|.+|++-|+..
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 8899999999999999999999999999887654
No 40
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=65.39 E-value=47 Score=30.85 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhccc-----ChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHHhhhhh
Q 047848 182 LSAIKTDVKKQKEFINFLIKEVESAVFD-----QISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNY 256 (360)
Q Consensus 182 l~aIk~Dve~~~~~I~~L~~~i~~~~~~-----d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalReAa~~y 256 (360)
+..+..+++....-|..|..+|..+... +=+.+++-..-|..++..|--|-+ .+..|--.+++.+++....
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~---~~~~~Dp~~i~~~~~~~~~- 146 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE---KYSENDPEKIEKLKEEIKI- 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHH-
Confidence 3445667777777777777777665432 333455666666666666666644 3334444566666554432
Q ss_pred hhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhh---cchhhhhhhhccCCCccc
Q 047848 257 RDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRAC---WSKGTGKKYRDFQIPCDW 311 (360)
Q Consensus 257 ~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er---~rd~~~~ryk~~~Ip~~w 311 (360)
+...+-.|.|| |..+..=+-+ +...... +.||||-||
T Consensus 147 -----~~~~anrwTDN-----------I~~l~~~~~~k~~~~~~~i~--k~f~Ip~d~ 186 (188)
T PF03962_consen 147 -----AKEAANRWTDN-----------IFSLKSYLKKKFGMDEEDIR--KEFGIPEDF 186 (188)
T ss_pred -----HHHHHHHHHhh-----------HHHHHHHHHHhcCCCHHHHH--HHcCCcccc
Confidence 22344456666 3333322222 2222222 799999876
No 41
>PRK14127 cell division protein GpsB; Provisional
Probab=65.09 E-value=30 Score=30.01 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
.+.-+..+-+.++ .+|.+|+++|.+|++++.++++++...
T Consensus 28 VD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3333444444444 557777777777777777777776644
No 42
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=64.40 E-value=37 Score=29.54 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 14 QKERDARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 14 KkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
++.|.+.++.|+.++..+.|.+.+|+++|..+..+
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666667777777777777777777766655
No 43
>PRK11637 AmiB activator; Provisional
Probab=64.13 E-value=26 Score=35.76 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=6.4
Q ss_pred chhHHHHHHHHHHH
Q 047848 5 DDDSRIDSFQKERD 18 (360)
Q Consensus 5 d~e~eI~~LKkeLd 18 (360)
+...++.+++++++
T Consensus 44 ~~~~~l~~l~~qi~ 57 (428)
T PRK11637 44 DNRDQLKSIQQDIA 57 (428)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444444
No 44
>PF14282 FlxA: FlxA-like protein
Probab=60.52 E-value=35 Score=28.89 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 5 DDDSRIDSFQKERDAR-------IALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 5 d~e~eI~~LKkeLds~-------n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
.+..+|..|+++|... .++-+.+.+-|..+|..|.+||..|..+..+.
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888722 24556667777888888888888887665444
No 45
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=60.49 E-value=31 Score=28.39 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 5 DDDSRIDSFQKERD----------------------------ARIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 5 d~e~eI~~LKkeLd----------------------------s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
..+.+|..|+++|+ .-..+|..++--|+.+|..|+.++.+|..+..+
T Consensus 12 ~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~ 86 (88)
T PF14389_consen 12 ALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQ 86 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888887 124566667777777777777777777766543
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=60.19 E-value=37 Score=30.22 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
..+..|+..|+.|+.++..+..++..++..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666666666655533
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=60.07 E-value=2.2e+02 Score=29.58 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=13.1
Q ss_pred hcCCCCHHHHHHHHHH
Q 047848 336 FAGGFDAETIQAFEEL 351 (360)
Q Consensus 336 faggfd~e~~~afeel 351 (360)
|.||+|.++.+.|-++
T Consensus 506 ~~~~ld~~~~~~~~~~ 521 (562)
T PHA02562 506 FDGALDAEGTKALLSI 521 (562)
T ss_pred cCcccchhHHHHHHHH
Confidence 7899999988877554
No 48
>PF15195 TMEM210: TMEM210 family
Probab=59.14 E-value=5.9 Score=34.14 Aligned_cols=8 Identities=63% Similarity=1.464 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 047848 116 APPPPPLP 123 (360)
Q Consensus 116 pppppPpP 123 (360)
++||||||
T Consensus 105 ~~pppppP 112 (116)
T PF15195_consen 105 EEPPPPPP 112 (116)
T ss_pred CCCCcCcC
Confidence 34444444
No 49
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=59.04 E-value=43 Score=26.21 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDN 50 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~ 50 (360)
+..|..|+.++- ..+++|.+...+..++|..|+.++..|...+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 49 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLR 49 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554 45666666666666666666666665554433
No 50
>smart00338 BRLZ basic region leucin zipper.
Probab=57.66 E-value=35 Score=25.86 Aligned_cols=33 Identities=30% Similarity=0.316 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
.+.+|+.+...|+.+...|.+++..|..++...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777777777666655443
No 51
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=54.90 E-value=14 Score=39.05 Aligned_cols=11 Identities=9% Similarity=0.295 Sum_probs=6.5
Q ss_pred hhhhhHHHHHh
Q 047848 166 AFTRNMIGEIE 176 (360)
Q Consensus 166 ~~~~~iLgEIe 176 (360)
..+++.|+-|.
T Consensus 454 DaRsdLL~aIr 464 (518)
T KOG1830|consen 454 DARSDLLAAIR 464 (518)
T ss_pred chHHHHHHHHH
Confidence 45566666663
No 52
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=54.30 E-value=17 Score=32.71 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=46.2
Q ss_pred HhHHHHHHHHHHhhhhcccChHHHHHHH-HhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHH
Q 047848 191 KQKEFINFLIKEVESAVFDQISEVEAFV-KWLDGELSSLVDERAVLKHFPQWPERKADTLRE 251 (360)
Q Consensus 191 ~~~~~I~~L~~~i~~~~~~d~~~v~~Fv-~wld~eLs~L~DEraVLk~F~~wPe~K~dalRe 251 (360)
++.+|++.|.+.++.....|.+|++.|. .+.|+....=-+|-+|.+.+ |.|..=+..+..
T Consensus 2 ~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~L-G~P~~iA~~i~~ 62 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAEL-GSPKEIAREILA 62 (181)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHc-CCHHHHHHHHHH
Confidence 4678999999999988888888877654 46677666666789999999 999665554443
No 53
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=54.06 E-value=32 Score=30.72 Aligned_cols=32 Identities=41% Similarity=0.496 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 17 RDARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 17 Lds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
++..+.+|++++..|.++++.|++++.+|.+.
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445666666666666666666666666544
No 54
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.92 E-value=45 Score=31.70 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+++++.++.+.|.++|..++.++.+|+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~ 69 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLE 69 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 55
>PRK00736 hypothetical protein; Provisional
Probab=53.75 E-value=63 Score=25.44 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
.+..|..|+.++- ..+++|.+...+-.++|..|..++..|..+.
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666555554 5566666666666666666666666554443
No 56
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=53.54 E-value=36 Score=26.34 Aligned_cols=32 Identities=3% Similarity=0.090 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVL 36 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~ 36 (360)
|+|+++..++-.+. +.|+++.+.+.++++.+.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555554 445555555555555443
No 57
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.92 E-value=41 Score=24.73 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 13 FQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 13 LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
|+..++ +.-+.|..++..|.++...|.++|..|...
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555 557888899999999999999999887753
No 58
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=52.82 E-value=1.3e+02 Score=28.68 Aligned_cols=74 Identities=23% Similarity=0.354 Sum_probs=49.9
Q ss_pred hcccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHH----HhhhhhhhhhhhHHHhhhcccccCCcHHHHH
Q 047848 206 AVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLR----EAACNYRDLKNLEQEVSSFEDNQKESLPQAT 281 (360)
Q Consensus 206 ~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalR----eAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L 281 (360)
-+-.||.+|-+.|--|+.-+..| +| .| +-+.|.|| .+..+-.++.+++..+.+ ++.-+
T Consensus 69 PSr~DiarvA~lvinlE~kvD~l-ee-----~f----dd~~d~l~~q~eq~~~~~~~v~~~~q~~~~--------l~~K~ 130 (189)
T TIGR02132 69 PTKEDIANVASLVINLEEKVDLI-EE-----FF----DDKFDELEAQQEQAPALKKDVTKLKQDIKS--------LDKKL 130 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HH-----HH----HHHHHHHHHHHhhCchHHhHHHHHHHHHHH--------HHHHH
Confidence 34456777777776666666665 32 34 55567777 677777788888877766 56668
Q ss_pred HHHHHHHHHHhhcchh
Q 047848 282 RKMQALQDRRACWSKG 297 (360)
Q Consensus 282 ~Km~~l~dk~Er~rd~ 297 (360)
|+|..|+++--.|.|+
T Consensus 131 D~~L~llE~~~~~~~~ 146 (189)
T TIGR02132 131 DKILELLEGQQKTQDE 146 (189)
T ss_pred HHHHHHHhcCccchhH
Confidence 8888888766666664
No 59
>PRK00295 hypothetical protein; Provisional
Probab=52.76 E-value=72 Score=25.13 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
.+..|..|+-++- -.+++|.+..-+..++|..|..++..|..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554 446666666666666666666666655443
No 60
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.62 E-value=48 Score=27.51 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 12 SFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 12 ~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
.+...|+.++..++.+.++++.++..+..++..++..+-+
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555544433
No 61
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=52.40 E-value=41 Score=35.93 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=15.2
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Q 047848 9 RIDSFQKERD---ARIALLEKENFELRQ 33 (360)
Q Consensus 9 eI~~LKkeLd---s~n~eLe~EnkkLeQ 33 (360)
++.+++++++ ..|+.|+.||++|++
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQK 94 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555 557777777777755
No 62
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.52 E-value=68 Score=26.30 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
-.+++|+++|..|+|+...+..+...|+..+
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~en 55 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALEREN 55 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 5688999999999988888887777777553
No 63
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=50.61 E-value=59 Score=31.81 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhhhhh
Q 047848 32 RQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 32 eQel~~LksQI~sL~~q~~e 51 (360)
++-|++++++|..|+.++.+
T Consensus 54 E~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 54 EQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777766644
No 64
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=49.63 E-value=61 Score=34.01 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=19.7
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 047848 169 RNMIGEIENRSTYLSAIKTDVKKQKEFINFLIK 201 (360)
Q Consensus 169 ~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~ 201 (360)
=||-.=|+=|+.|..++-..--.+-.|....++
T Consensus 260 vDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~K 292 (457)
T KOG0559|consen 260 VDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSK 292 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCceeeehhHHHH
Confidence 467777788999987774443333344444333
No 65
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=49.52 E-value=51 Score=29.42 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 047848 26 KENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 26 ~EnkkLeQel~~LksQI~sL~ 46 (360)
.++..|++++..+++++..|.
T Consensus 116 ~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 116 EEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 66
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.28 E-value=34 Score=29.35 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
..+++.+...+-+++.+|+.++..|-
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~ 35 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELL 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444333
No 67
>PRK02119 hypothetical protein; Provisional
Probab=48.82 E-value=77 Score=25.34 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
.+..|..|+.++- ..+++|.+-..+-.+++..|..++..|..+
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544 445555555555555666666666555433
No 68
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=48.77 E-value=37 Score=38.47 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=4.0
Q ss_pred HHHHHhhCC
Q 047848 55 MLWKKLQNP 63 (360)
Q Consensus 55 ~l~Kkiq~~ 63 (360)
+..|++-++
T Consensus 906 ~~~k~~~Ks 914 (1106)
T KOG0162|consen 906 KVLKDIYKS 914 (1106)
T ss_pred hhhccccce
Confidence 334444444
No 69
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=48.42 E-value=36 Score=28.88 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
..+.+++.+|++++++-.+|+.+|..|+.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44555555555555555555556665553
No 70
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.42 E-value=73 Score=31.44 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
|....++.+|.+|+ ..+.+|.+++..|+.++.+.+..+.+|+..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E 178 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666 556777777777776666666666666644
No 71
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=48.31 E-value=73 Score=24.94 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=29.1
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
|+...+..++..++ .++..|+.....+++++..+..+|..++..
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766 456666777777777777777777666544
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=48.24 E-value=68 Score=31.89 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=26.9
Q ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 8 SRIDSFQKERD----------ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 8 ~eI~~LKkeLd----------s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
.++..++.+|. ....+|+.+.+.+++++..+++++..+..++.+.+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555 23456666666666666666666666666655544
No 73
>PRK04406 hypothetical protein; Provisional
Probab=48.23 E-value=77 Score=25.54 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
+++|.+..-+..++|..|..++..|
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.62 E-value=68 Score=33.81 Aligned_cols=45 Identities=24% Similarity=0.328 Sum_probs=26.5
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 9 RIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 9 eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
++.+..+++. ..+.+-+++..+|+.+|++++..|.+++.++++-+
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 44555556666666667777777776666665555
No 75
>PRK14849 putative lipoprotein/autotransporter domain-containing protein; Provisional
Probab=47.45 E-value=15 Score=44.68 Aligned_cols=6 Identities=17% Similarity=0.108 Sum_probs=3.2
Q ss_pred HHhhhh
Q 047848 145 SLTRKD 150 (360)
Q Consensus 145 sLkkk~ 150 (360)
.|..|.
T Consensus 1502 tLhdR~ 1507 (1806)
T PRK14849 1502 RLHDRL 1507 (1806)
T ss_pred hHHHhc
Confidence 455554
No 76
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=47.28 E-value=98 Score=24.19 Aligned_cols=63 Identities=29% Similarity=0.398 Sum_probs=44.2
Q ss_pred ccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHH-hhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHH
Q 047848 208 FDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLRE-AACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQA 286 (360)
Q Consensus 208 ~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalRe-Aa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~ 286 (360)
..++.++..++.+|.++......| ||. ....|+++=....++...+.+ |......+..
T Consensus 18 ~~s~~~i~~~~~~L~~~i~~~~~e-----------------Lr~~V~~nY~~fI~as~~I~~m~~~----~~~l~~~l~~ 76 (87)
T PF08700_consen 18 NSSIKEIRQLENKLRQEIEEKDEE-----------------LRKLVYENYRDFIEASDEISSMEND----LSELRNLLSE 76 (87)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 566888888988888888777666 555 677888887777788887766 5554444444
Q ss_pred HHHHH
Q 047848 287 LQDRR 291 (360)
Q Consensus 287 l~dk~ 291 (360)
+...+
T Consensus 77 l~~~~ 81 (87)
T PF08700_consen 77 LQQSI 81 (87)
T ss_pred HHHHH
Confidence 44333
No 77
>PRK09039 hypothetical protein; Validated
Probab=47.13 E-value=55 Score=33.05 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+.+.++..|..+|. ....+..-+...|+++|..|+.|+.+|+..
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~ 159 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAA 159 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666 233334444444555555555555555444
No 78
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=46.92 E-value=91 Score=27.18 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 047848 4 EDDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLW 57 (360)
Q Consensus 4 gd~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~ 57 (360)
.+..+.+-.|...++ ..+.+|..++..|+..+..|.+|-.++...+.+.|..+.
T Consensus 12 ~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ 68 (107)
T PF09304_consen 12 NELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKID 68 (107)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888 447777777777777666666666666655555554433
No 79
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=46.85 E-value=2.1e+02 Score=25.53 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
.+..+++..+++++..+.=|++++.|.
T Consensus 21 ~kL~~~e~~Lq~~E~~l~iLEaKL~SI 47 (148)
T PF10152_consen 21 EKLSDMEQRLQRLEATLNILEAKLSSI 47 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555566666666666666666543
No 80
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.84 E-value=40 Score=28.61 Aligned_cols=23 Identities=30% Similarity=0.190 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 047848 19 ARIALLEKENFELRQEVLRLKAQ 41 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQ 41 (360)
.++++|+.+|+.|..++..|++-
T Consensus 41 ~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 41 QTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCc
Confidence 55566666666666666666653
No 81
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=46.57 E-value=11 Score=39.89 Aligned_cols=13 Identities=0% Similarity=-0.194 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q 047848 323 VSSLRLAKEYMKR 335 (360)
Q Consensus 323 ~asv~la~~ymkr 335 (360)
-+.|+++..||+-
T Consensus 359 ~~~v~~~~~~~~F 371 (461)
T PLN03132 359 TDVVDAIARLSYF 371 (461)
T ss_pred CCHHHHHHHHHHH
Confidence 3556666666655
No 82
>PRK14127 cell division protein GpsB; Provisional
Probab=46.49 E-value=66 Score=27.88 Aligned_cols=48 Identities=31% Similarity=0.339 Sum_probs=31.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 4 EDDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 4 gd~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
|=+..|+..+=.++-...+.|..+|..|..++.+|+.++..++.++..
T Consensus 22 GYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 22 GYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455555544444567777778888888888888877777765543
No 83
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=46.04 E-value=48 Score=24.99 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=35.9
Q ss_pred HHHHHHHhHHHHHHHHH-HhhhhcccChHHHHHHHHhhHHH-hh--hhhhhHHhhhhC
Q 047848 185 IKTDVKKQKEFINFLIK-EVESAVFDQISEVEAFVKWLDGE-LS--SLVDERAVLKHF 238 (360)
Q Consensus 185 Ik~Dve~~~~~I~~L~~-~i~~~~~~d~~~v~~Fv~wld~e-Ls--~L~DEraVLk~F 238 (360)
|+.=...-..|+.++.. .+......+..+|..|+.|+..+ ++ ++.--.++|++|
T Consensus 19 ~~~Y~~~l~~f~~~~~~~~~~~~~~i~~~~v~~f~~~~~~~~~s~~T~~~~~~alr~f 76 (84)
T PF02899_consen 19 IRSYRRDLRRFIRWLEEHGIIDWEDITEEDVRDFLEYLAKEGLSPSTINRRLSALRAF 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-CGGG--HHHHHHHHHHHHCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 44444455567777777 77778888889999999999884 43 466677777777
No 84
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.73 E-value=1.6e+02 Score=23.67 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047848 21 IALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI 42 (360)
+.+|+.+|++|.++......-|
T Consensus 41 ~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 41 NEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333
No 85
>PRK04325 hypothetical protein; Provisional
Probab=45.56 E-value=96 Score=24.81 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.+..|..|+.++- ..+++|.+-..+-.++|.+|..++..|..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444 44555555555555555566655554433
No 86
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=45.56 E-value=25 Score=38.18 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhh
Q 047848 137 PEVVELYRSLTRKD 150 (360)
Q Consensus 137 peVVelY~sLkkk~ 150 (360)
.-++.+|++-++++
T Consensus 321 ~r~~~LFEsr~~~~ 334 (817)
T KOG1925|consen 321 ARLEHLFESRAKEV 334 (817)
T ss_pred HHHHHHHHHhhhhh
Confidence 45777888877666
No 87
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=45.49 E-value=7 Score=40.48 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHH
Q 047848 185 IKTDVKKQKEFINF 198 (360)
Q Consensus 185 Ik~Dve~~~~~I~~ 198 (360)
||+-|..-..-+.+
T Consensus 109 IKAAvRAERRRl~e 122 (386)
T PF01698_consen 109 IKAAVRAERRRLEE 122 (386)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHhhc
Confidence 55555444444444
No 88
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.83 E-value=50 Score=25.17 Aligned_cols=28 Identities=43% Similarity=0.471 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 18 DARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 18 ds~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
+..+.+|+.++.+++++..+|+.+|..|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666677666
No 89
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.73 E-value=89 Score=25.91 Aligned_cols=30 Identities=30% Similarity=0.299 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
-++++|+.+|..|.+++..+.+.-..|...
T Consensus 25 mEieELKekn~~L~~e~~~~~~~r~~L~~e 54 (79)
T PRK15422 25 MEIEELKEKNNSLSQEVQNAQHQREELERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 447778888888877776655554444433
No 90
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=44.66 E-value=71 Score=26.31 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047848 21 IALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~ 43 (360)
++.|+.++.++++-=+.|+.+..
T Consensus 28 v~sLR~KLiKYt~LnkkLq~~~~ 50 (76)
T PF11544_consen 28 VGSLRGKLIKYTELNKKLQDQLL 50 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333443333
No 91
>PRK00846 hypothetical protein; Provisional
Probab=44.36 E-value=1e+02 Score=25.27 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.+..|..|+-++- ..+++|.+...+..+++..|+.++..|..
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~ 55 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444 44555555555555555555555554443
No 92
>PRK11637 AmiB activator; Provisional
Probab=44.20 E-value=81 Score=32.28 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=4.8
Q ss_pred HHHHHHHHHhhhh
Q 047848 34 EVLRLKAQISSLK 46 (360)
Q Consensus 34 el~~LksQI~sL~ 46 (360)
++..++.+|..++
T Consensus 104 ei~~l~~eI~~~q 116 (428)
T PRK11637 104 QIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 93
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.19 E-value=76 Score=26.32 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 047848 24 LEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 24 Le~EnkkLeQel~~LksQI~s 44 (360)
|+.+|++|.++-..-+..+.+
T Consensus 51 L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 51 LERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555554444444444443
No 94
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=43.72 E-value=75 Score=23.44 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
..+|+.++..|+.+...|..+|..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555554
No 95
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=43.64 E-value=1.3e+02 Score=27.31 Aligned_cols=58 Identities=29% Similarity=0.337 Sum_probs=40.9
Q ss_pred chhHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 5 DDDSRIDSFQKERD----------------ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 5 d~e~eI~~LKkeLd----------------s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
=...||..||+.-- ....+|+.++-.|.|++..|+..++.+....--.. ..++++++.
T Consensus 44 ~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k-~k~e~l~~~ 117 (135)
T KOG4196|consen 44 LSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK-SKYEALQNS 117 (135)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 34456777766533 22678899999999999999999988876655554 556666654
No 96
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.56 E-value=1.2e+02 Score=23.88 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
++.++-+..|+.|.++|..|+-++.
T Consensus 32 ~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 32 SKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555444443
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.50 E-value=68 Score=31.88 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=11.0
Q ss_pred HHHHHHhhHHHhhhhhhhHHhhh
Q 047848 214 VEAFVKWLDGELSSLVDERAVLK 236 (360)
Q Consensus 214 v~~Fv~wld~eLs~L~DEraVLk 236 (360)
....+.-+-..++.+.+|-+-|.
T Consensus 195 ~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 195 KNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 33334444444555555555554
No 98
>PF12938 M_domain: M domain of GW182
Probab=43.24 E-value=66 Score=31.46 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 047848 6 DDSRIDSFQKERDARIALLEK-------ENFELRQEVLRLKAQISSLKAHDNERKSMLWK 58 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~-------EnkkLeQel~~LksQI~sL~~q~~erqs~l~K 58 (360)
++++|+.--+.|+...++|.. +..++.-+|..+|.||+.|..++...|..+.|
T Consensus 151 LLnQLLq~I~~Lq~~Q~~L~~~~~~~~~~~~q~~~~I~~~kqqI~~lqnQIa~qQal~vK 210 (235)
T PF12938_consen 151 LLNQLLQQIKRLQQQQQNLQRQGNASGQEEQQLAVQINKTKQQIQQLQNQIAAQQALYVK 210 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 456666655666655555543 55566668899999999999999988887777
No 99
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.75 E-value=1.9e+02 Score=26.48 Aligned_cols=48 Identities=17% Similarity=0.122 Sum_probs=29.3
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHh
Q 047848 13 FQKERD--ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKL 60 (360)
Q Consensus 13 LKkeLd--s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kki 60 (360)
|.+.|+ ..-+++..++++|++++..+..+|..+-.+..+..+-|-.-+
T Consensus 14 L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 14 LSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444 445566666677777777777777766666666665555555
No 100
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=42.22 E-value=50 Score=28.65 Aligned_cols=8 Identities=38% Similarity=0.380 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 047848 35 VLRLKAQI 42 (360)
Q Consensus 35 l~~LksQI 42 (360)
+.+|+.++
T Consensus 24 l~~LK~~~ 31 (110)
T PRK13169 24 LGALKKQL 31 (110)
T ss_pred HHHHHHHH
Confidence 33333333
No 101
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=42.22 E-value=47 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCCCCCC
Q 047848 29 FELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNPNTDT 67 (360)
Q Consensus 29 kkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~~~~~ 67 (360)
++|+-+..+|+.++.+=+.-+ -+.|||+|++|++|+
T Consensus 182 eQLRre~V~lentlEQEqEal---vN~LwKrmdkLe~ek 217 (552)
T KOG2129|consen 182 EQLRREAVQLENTLEQEQEAL---VNSLWKRMDKLEQEK 217 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 555555555555544222112 257999999997664
No 102
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.21 E-value=1e+02 Score=28.68 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
..++..+.+|+.++..|+.++..++.++..++....+++
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~ 161 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR 161 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666666665555544
No 103
>PF14688 DUF4461: Domain of unknown function (DUF4461)
Probab=41.75 E-value=60 Score=32.58 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=35.7
Q ss_pred cccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHH
Q 047848 207 VFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQA 286 (360)
Q Consensus 207 ~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~ 286 (360)
++++...|+.|+.--=.+......+..-++ ...+.|+.....-..|..| ++ ||....++.+.-+++
T Consensus 210 ~~~~~~~L~~Fl~~~~~~A~~~~~~~~~~~-------~~e~~L~~~c~~~l~L~~L------~k-d~sit~~~mi~cc~r 275 (313)
T PF14688_consen 210 SSCPPPELVDFLSENADEARERMQRYNRLK-------EEEEQLIERCRKELGLRSL------TK-DPSITPDQMISCCRR 275 (313)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCchhc------cc-CCCCCHHHHHHHHHH
Confidence 467888888887532222222222211111 1223333333333333333 23 466777888888888
Q ss_pred HHHHH
Q 047848 287 LQDRR 291 (360)
Q Consensus 287 l~dk~ 291 (360)
|++..
T Consensus 276 Ll~~~ 280 (313)
T PF14688_consen 276 LLEQS 280 (313)
T ss_pred HHhcc
Confidence 87743
No 104
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.55 E-value=69 Score=24.39 Aligned_cols=20 Identities=50% Similarity=0.629 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 047848 19 ARIALLEKENFELRQEVLRL 38 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~L 38 (360)
..+++++.+|.+|++++..|
T Consensus 31 ~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 31 KEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555444
No 105
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.40 E-value=81 Score=29.90 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
..+.|+.+|+.+|+...+++.+....+++.+++.+.++..|+.+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777554555555555555444444444444444
No 106
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.81 E-value=93 Score=26.70 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=8.9
Q ss_pred CCCCchhHHHHHHHHHHH
Q 047848 1 MAPEDDDSRIDSFQKERD 18 (360)
Q Consensus 1 ~~~gd~e~eI~~LKkeLd 18 (360)
|..-++...|..++.++.
T Consensus 1 Mdk~~l~~~l~~le~~l~ 18 (107)
T PF06156_consen 1 MDKKELFDRLDQLEQQLG 18 (107)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 334445555555555544
No 107
>PF12312 NeA_P2: Nepovirus subgroup A polyprotein ; InterPro: IPR021081 Proteins in this entry are typically between 259 and 1110 amino acids in length. They are found in association with PF03688 from PFAM, PF03689 from PFAM and PF03391 from PFAM. This entry includes RNA2 polyprotein (Protein 2A) which is implicated in RNA2 replication.
Probab=40.75 E-value=16 Score=35.24 Aligned_cols=10 Identities=20% Similarity=0.142 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 047848 84 LDGETFRPRP 93 (360)
Q Consensus 84 ~~~~~p~p~p 93 (360)
+.+|.|||.|
T Consensus 104 v~ipspPp~P 113 (258)
T PF12312_consen 104 VVIPSPPPMP 113 (258)
T ss_pred cccCCCcCCC
Confidence 3445555443
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.66 E-value=85 Score=31.35 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
...+|+.+..++++++..++.+...|.
T Consensus 65 eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 65 ELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444
No 109
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.47 E-value=94 Score=25.81 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 14 QKERDARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 14 KkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
.+-++.+++.++.+..+++.++..+..++..+...
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666666666666666655544
No 110
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=40.31 E-value=2.6e+02 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=19.1
Q ss_pred ccccchHHHHHHHHHHhhhhhcccc
Q 047848 131 KTVRRVPEVVELYRSLTRKDAHMEN 155 (360)
Q Consensus 131 ~~vrRspeVVelY~sLkkk~~k~d~ 155 (360)
.--+|..+=-|.|+-.+-.+.|-|+
T Consensus 506 ~s~~RreqkREQYrqVreHV~keDG 530 (832)
T KOG2077|consen 506 SSASRREQKREQYRQVREHVQKEDG 530 (832)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccc
Confidence 4567889999999988877765554
No 111
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=40.29 E-value=76 Score=26.32 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
+..|+.....++.++..++.++..++.+..+.+
T Consensus 65 ~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 65 RTELKERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444443
No 112
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=39.55 E-value=41 Score=37.35 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=24.0
Q ss_pred hhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhhcch
Q 047848 258 DLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSK 296 (360)
Q Consensus 258 ~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er~rd 296 (360)
.+.++..++.++.+--+.-.+.....|..+..+++.++.
T Consensus 664 ~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~~~~~ 702 (833)
T KOG1922|consen 664 SLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLEKVKR 702 (833)
T ss_pred hhhcccchhcccchhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655555666777777777776664444
No 113
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.33 E-value=57 Score=33.12 Aligned_cols=47 Identities=30% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCCCCCCC
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNPNTDTS 68 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~~~~~~ 68 (360)
.+...|+.+|+.|.+.-..+.++.-.=+..+. +.|+|+||.++.++-
T Consensus 48 ~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is---N~LlKkl~~l~keKe 94 (310)
T PF09755_consen 48 ARCKHLQEENRALREASVRIQAKAEQEEEFIS---NTLLKKLQQLKKEKE 94 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44566666666666555555544443333332 579999999866543
No 114
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=39.18 E-value=1.3e+02 Score=28.10 Aligned_cols=42 Identities=24% Similarity=0.300 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhh
Q 047848 7 DSRIDSFQKERDARIALLEKENFELRQ---EVLRLKAQISSLKAH 48 (360)
Q Consensus 7 e~eI~~LKkeLds~n~eLe~EnkkLeQ---el~~LksQI~sL~~q 48 (360)
+.++...+.+|+.++.+|..+.++|+. ..+.|+.+..-|..+
T Consensus 115 ~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 115 CQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555444432 333444444444433
No 115
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.06 E-value=1.1e+02 Score=28.97 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
|..++......++++++|+.+|.++.
T Consensus 72 ~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 72 NEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 116
>PHA03395 p10 fibrous body protein; Provisional
Probab=38.72 E-value=1.1e+02 Score=25.82 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhc--ccChHHHHHHHHhhHHHhhhh
Q 047848 181 YLSAIKTDVKKQKEFINFLIKEVESAV--FDQISEVEAFVKWLDGELSSL 228 (360)
Q Consensus 181 ~l~aIk~Dve~~~~~I~~L~~~i~~~~--~~d~~~v~~Fv~wld~eLs~L 228 (360)
-|+.|.+||..-..-+..|-..|.... ..|++++-.+.+-+...|..+
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti 54 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTI 54 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHH
Confidence 578999999999999999998887755 678888888776666666443
No 117
>PRK09343 prefoldin subunit beta; Provisional
Probab=38.41 E-value=1.1e+02 Score=26.40 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
.++..|+++...|+..+.+++.+|..+
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555433
No 118
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=38.15 E-value=66 Score=26.95 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 17 RDARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 17 Lds~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+..+|+.|+.||++|..|.+..+.|+...+
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~qvkn~~ 57 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQVKNAK 57 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346688888888888888887777776444
No 119
>PF14780 DUF4477: Domain of unknown function (DUF4477)
Probab=38.01 E-value=61 Score=29.94 Aligned_cols=113 Identities=18% Similarity=0.329 Sum_probs=58.0
Q ss_pred HHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhh-HHHHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHH
Q 047848 213 EVEAFVKWLDGELSSLVDERAVLKHFPQWPERKAD-TLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRR 291 (360)
Q Consensus 213 ~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~d-alReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~ 291 (360)
++..++..+++ +..|..|.+||.++ --|-- -.| -+..|+.|+++++.+..+..- -++..+..+...+..
T Consensus 31 ~l~~~~~~l~s-~~~l~~E~avL~rl----~Yk~~nq~R-~~k~f~~L~qV~r~L~rl~~m---~L~~~l~~l~~~l~~- 100 (188)
T PF14780_consen 31 ALKSVLNQLSS-LPQLQTEAAVLERL----MYKNKNQHR-RAKFFQALKQVRRCLRRLKSM---NLERTLNDLRSLLPD- 100 (188)
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHH----HHHccCccc-CChHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHhCcc-
Confidence 34445666666 77788899999877 11110 011 123355566666666555422 244444444333322
Q ss_pred hhcchhhhhhhhccCCCc----ccccc-----chhhHHHHHHHHHHHHHHHHHhcCCC
Q 047848 292 ACWSKGTGKKYRDFQIPC----DWMMD-----SGLIGQMKVSSLRLAKEYMKRFAGGF 340 (360)
Q Consensus 292 Er~rd~~~~ryk~~~Ip~----~wmld-----~gii~kiK~asv~la~~ymkrfaggf 340 (360)
+....-..+-+|. +|++. ..++.+|-..+.+-|.-++..++.||
T Consensus 101 -----~~~~~~~~~~lps~~~~e~vl~rllg~~kLl~ri~~~~~~aa~~~~~~l~~~~ 153 (188)
T PF14780_consen 101 -----SKSEEDKMCLLPSRPSLEYVLVRLLGFAKLLERILECCLKAAELFVQQLRLGF 153 (188)
T ss_pred -----ccccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222332 34332 34556777888888888888765554
No 120
>PHA03211 serine/threonine kinase US3; Provisional
Probab=37.94 E-value=43 Score=34.70 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=4.3
Q ss_pred hhHHhhhhC
Q 047848 230 DERAVLKHF 238 (360)
Q Consensus 230 DEraVLk~F 238 (360)
.|..+|+++
T Consensus 209 ~E~~iL~~L 217 (461)
T PHA03211 209 HEARLLRRL 217 (461)
T ss_pred HHHHHHHHC
Confidence 444555444
No 121
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.87 E-value=1.1e+02 Score=26.55 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 24 LEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 24 Le~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
...+...|+.++..++..+..|..||
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN 121 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQN 121 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555443
No 122
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.95 E-value=1.1e+02 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.177 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
|..++.+++.-+.....|..+|..|+-+
T Consensus 27 n~~~e~kLqeaE~rn~eL~~ei~~L~~e 54 (61)
T PF08826_consen 27 NLAFESKLQEAEKRNRELEQEIERLKKE 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 123
>PF15294 Leu_zip: Leucine zipper
Probab=36.56 E-value=1.1e+02 Score=30.74 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=50.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 4 EDDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 4 gd~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
+|.++.+..+|.+++....++.+.++.|..++...+.++-.+..+.....+.+.||.|..
T Consensus 193 ~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqqT 252 (278)
T PF15294_consen 193 SDLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQT 252 (278)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCcc
Confidence 367888889999999888888889999999999999999888888777777888887754
No 124
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=36.51 E-value=1.2e+02 Score=28.42 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 6 DDSRIDSFQKERD----------ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 6 ~e~eI~~LKkeLd----------s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
+...|..||.+.. ....++..+|++|.+-+..+..++..|+.+..++.
T Consensus 25 NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 25 NLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554 45677788888888888888888887777765554
No 125
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.40 E-value=35 Score=28.65 Aligned_cols=28 Identities=39% Similarity=0.452 Sum_probs=24.4
Q ss_pred ChHHHHHHHHhhHHHhhhhhhhHHhhhh
Q 047848 210 QISEVEAFVKWLDGELSSLVDERAVLKH 237 (360)
Q Consensus 210 d~~~v~~Fv~wld~eLs~L~DEraVLk~ 237 (360)
|.++|..|+++|..++..|.+|.+=|+.
T Consensus 19 d~~eVD~fl~~l~~~~~~l~~e~~~L~~ 46 (131)
T PF05103_consen 19 DPDEVDDFLDELAEELERLQRENAELKE 46 (131)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999988776554
No 126
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.40 E-value=2e+02 Score=22.95 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 047848 27 ENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 27 EnkkLeQel~~LksQI~sL 45 (360)
.+++|++.+.+++.++..|
T Consensus 34 ~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 34 TIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 127
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=36.09 E-value=1e+02 Score=25.89 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
.+++.++...+.|+.++..++.++.
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~ 98 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLK 98 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 128
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=35.94 E-value=3e+02 Score=29.82 Aligned_cols=138 Identities=16% Similarity=0.270 Sum_probs=69.7
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhhh---cccChHHHHHHH-------HhhHHHhhhhhhhHHhhhhC
Q 047848 169 RNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESA---VFDQISEVEAFV-------KWLDGELSSLVDERAVLKHF 238 (360)
Q Consensus 169 ~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~~---~~~d~~~v~~Fv-------~wld~eLs~L~DEraVLk~F 238 (360)
.+.+.+|.=....+..|-..+.....-|..+-..|... .-..-.++.+.. .|++..+.. -
T Consensus 260 ~~~l~~lkL~~k~id~Lv~~lr~~~~rIr~~Er~i~~~~~~~~m~R~~Fi~~f~gnEt~~~w~~~~~~~----------~ 329 (619)
T PRK05658 260 KEELKSLRLTSKQIDELVEQLRDINKRVRGQERELLRLVERLKMPRKDFLKLFQGNELDITWLEKEIAS----------G 329 (619)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHccCCcCCHHHHHHHHhc----------c
Confidence 56677777777777777777766666666665555431 111222332222 244444321 1
Q ss_pred CCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHH--------------HHHHhhcchhhhhhhhc
Q 047848 239 PQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQAL--------------QDRRACWSKGTGKKYRD 304 (360)
Q Consensus 239 ~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l--------------~dk~Er~rd~~~~ryk~ 304 (360)
..|. +++... +.++..+...+......+..+......-+..+ +..=-|+=-+..++|..
T Consensus 330 ~~~a----~~l~~~---~~~I~~lq~~L~~ie~~~~Ls~eElk~l~~~i~~g~~~~~~a~~~Li~~nlrlV~~iA~ky~~ 402 (619)
T PRK05658 330 KPWS----EFLVRV---YDEIKKLQQELEAIEEETGLTIEELKEINRQISKGEAKARRAKKEMVEANLRLVISIAKKYTN 402 (619)
T ss_pred CchH----HHHHHH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1232 222221 22333333344433333334443322211111 11111444577889999
Q ss_pred cCCCccccccchhhHHHHH
Q 047848 305 FQIPCDWMMDSGLIGQMKV 323 (360)
Q Consensus 305 ~~Ip~~wmld~gii~kiK~ 323 (360)
.|++++=|..-|.||=||-
T Consensus 403 ~gl~~~DLiQeG~iGL~~A 421 (619)
T PRK05658 403 RGLQFLDLIQEGNIGLMKA 421 (619)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999988888888886653
No 129
>PHA03247 large tegument protein UL36; Provisional
Probab=35.85 E-value=45 Score=42.38 Aligned_cols=24 Identities=0% Similarity=-0.126 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhcchhhhhhhh
Q 047848 280 ATRKMQALQDRRACWSKGTGKKYR 303 (360)
Q Consensus 280 ~L~Km~~l~dk~Er~rd~~~~ryk 303 (360)
++.-|..+.++|.+||.-.+.+-.
T Consensus 3114 Li~ACr~i~r~lr~TR~~L~~~~~ 3137 (3151)
T PHA03247 3114 LIEACRRIRRQLRRTRHALLDRSG 3137 (3151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344466667778888876555433
No 130
>smart00340 HALZ homeobox associated leucin zipper.
Probab=35.59 E-value=48 Score=24.62 Aligned_cols=24 Identities=33% Similarity=0.306 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 19 ARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI 42 (360)
.--+.|.+||++|+.++.+|++.-
T Consensus 12 rcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 12 RCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 446778899999999998887643
No 131
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=35.49 E-value=1.3e+02 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
.++..|+++.+.++.++.++++++..+
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666543
No 132
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=35.44 E-value=76 Score=31.85 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=37.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhhhhhhhhhHHHHHhhCCCCCCCCC
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELR--------------QEVLRLKAQISSLKAHDNERKSMLWKKLQNPNTDTSPQ 70 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLe--------------Qel~~LksQI~sL~~q~~erqs~l~Kkiq~~~~~~~~~ 70 (360)
|+.++....+.+|...+.+|+.-|..|+ |.+.++=..+.=|++..-|++ .+..-.|.|.-++-+.
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke-~llesvqRLkdEardl 176 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKE-VLLESVQRLKDEARDL 176 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666554 233333333444444455554 4555667775554444
Q ss_pred Cccccc
Q 047848 71 KQTDFV 76 (360)
Q Consensus 71 ~~~~~~ 76 (360)
.+...|
T Consensus 177 rqelav 182 (333)
T KOG1853|consen 177 RQELAV 182 (333)
T ss_pred HHHHHH
Confidence 333333
No 133
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=99 Score=27.33 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
.++.-|+++-++++.++.+|++.|.++
T Consensus 84 ~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 84 LRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555543
No 134
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.32 E-value=1.1e+02 Score=23.49 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=14.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFEL 31 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkL 31 (360)
|.+.++..|.++++....++..-.++|
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777664444444443333
No 135
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=35.20 E-value=61 Score=26.63 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+.+++++|.+|..++..|++.++.+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877777554
No 136
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=35.09 E-value=70 Score=26.95 Aligned_cols=47 Identities=17% Similarity=0.410 Sum_probs=29.8
Q ss_pred ccChHHHHHHHHhhHHHhhh--hhhhH-------------Hhhh--hCCCCCcchhhHHHHhhh
Q 047848 208 FDQISEVEAFVKWLDGELSS--LVDER-------------AVLK--HFPQWPERKADTLREAAC 254 (360)
Q Consensus 208 ~~d~~~v~~Fv~wld~eLs~--L~DEr-------------aVLk--~F~~wPe~K~dalReAa~ 254 (360)
+-+.+.|+.|..||+.+--. ...++ .|++ +=|||=..++||||.+.+
T Consensus 18 ~i~v~~VL~~l~~L~~e~ke~I~a~~~~~Gn~~AA~~LL~~l~~~~~~~GWf~~FldAL~~~G~ 81 (88)
T cd08818 18 YIRVEPVLDYLTFLEAEVKERIRAAAATRGNIAAAELLLSTLEKGTWDPGWFREFVTALEQGGC 81 (88)
T ss_pred hccHHHHhhhcccCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHhccCCchHHHHHHHHHhcCC
Confidence 44555666666666555322 22222 3455 567999999999998775
No 137
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.08 E-value=1.2e+02 Score=30.68 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047848 6 DDSRIDSFQKERD-ARIALLEKENFELR 32 (360)
Q Consensus 6 ~e~eI~~LKkeLd-s~n~eLe~EnkkLe 32 (360)
-++||..||.+|- -+.+=.++|+.+++
T Consensus 87 RetEI~eLksQL~RMrEDWIEEECHRVE 114 (305)
T PF15290_consen 87 RETEIDELKSQLARMREDWIEEECHRVE 114 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666555 22233334444443
No 138
>PRK06798 fliD flagellar capping protein; Validated
Probab=34.92 E-value=1.2e+02 Score=31.62 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
++.+|..+.++++..+..|+..-++|..++.+|+..+..|++|-.-.+
T Consensus 384 l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~ 431 (440)
T PRK06798 384 IDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIK 431 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555666667777777777666644333
No 139
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=34.87 E-value=1.2e+02 Score=28.29 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.+..|+.++.+|.+++..|+.++..|.
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 140
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=34.81 E-value=1.4e+02 Score=24.56 Aligned_cols=37 Identities=30% Similarity=0.309 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
+-++.++..|+++..++++++..+++++..+...+-+
T Consensus 80 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 80 EFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777888888888888888888777655433
No 141
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=34.63 E-value=82 Score=23.24 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKA 40 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~Lks 40 (360)
.|+....+|+.+|..|.+++..|+.
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446677777777777777777664
No 142
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=34.17 E-value=4.2e+02 Score=25.27 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=39.1
Q ss_pred HHHHhHHHH-HHHHHHh--hhhcccChHHHHHHHHhhHHHhhhhhhhHHhhhhC-CCCCcchhh
Q 047848 188 DVKKQKEFI-NFLIKEV--ESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHF-PQWPERKAD 247 (360)
Q Consensus 188 Dve~~~~~I-~~L~~~i--~~~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F-~~wPe~K~d 247 (360)
+.|.+|+-| +.+...+ ..|.+-|=+|++.++.-+|..+...-|=..-|--+ +.-|+.-.|
T Consensus 53 ~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e 116 (217)
T COG1392 53 DLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDE 116 (217)
T ss_pred HHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHH
Confidence 345555544 3444445 35778899999999999999998876655544444 257844433
No 143
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.16 E-value=1.4e+02 Score=31.51 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
..+|..+++++. -.-.+|+.++++++.+++.+..++.
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~ 83 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLI 83 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 2344444444444444444444444
No 144
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.97 E-value=1.6e+02 Score=29.46 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
....+|..+++.|+++..++..++.+|+.+
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 145
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=33.90 E-value=14 Score=38.42 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 047848 324 SSLRLAKEYMKR 335 (360)
Q Consensus 324 asv~la~~ymkr 335 (360)
+|=.|=+.|-.|
T Consensus 318 ~sn~lrr~~ker 329 (386)
T PF01698_consen 318 ASNALRRAFKER 329 (386)
T ss_dssp HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHh
Confidence 344444444444
No 146
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.85 E-value=15 Score=38.65 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=70.7
Q ss_pred HHHhhhhhhhhhhhHHHhhhcccc-c--CCcHHHHHHHHHHHHHHHhhcc----------hhhh-------hhhhccCCC
Q 047848 249 LREAACNYRDLKNLEQEVSSFEDN-Q--KESLPQATRKMQALQDRRACWS----------KGTG-------KKYRDFQIP 308 (360)
Q Consensus 249 lReAa~~y~~L~~l~~e~s~~~d~-p--~~p~~~~L~Km~~l~dk~Er~r----------d~~~-------~ryk~~~Ip 308 (360)
-+-++.+|.++--+.+.+.+|..| + ..-+..+|+.+.. ++.++|+| |..+ +=|.-++||
T Consensus 183 ~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~-I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlP 261 (437)
T COG0621 183 KRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK-IPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLP 261 (437)
T ss_pred HHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-CCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCc
Confidence 344778899988888888999866 3 3668888888888 66677766 3333 345557899
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHH----------------hcCCCCHHHHHHHHHHHhhh
Q 047848 309 CDWMMDSGLIGQMKVSSLRLAKEYMKR----------------FAGGFDAETIQAFEELKKVG 355 (360)
Q Consensus 309 ~~wmld~gii~kiK~asv~la~~ymkr----------------faggfd~e~~~afeelr~~~ 355 (360)
+.= =|.-|+-.||..- -+..|+.+ |--||=+||-+.||+.-+..
T Consensus 262 vQs-Gsd~ILk~M~R~y--t~e~~~~~i~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv 321 (437)
T COG0621 262 VQS-GSDRILKRMKRGY--TVEEYLEIIEKLRAARPDIAISTDIIVGFPGETEEDFEETLDLV 321 (437)
T ss_pred ccc-CCHHHHHHhCCCc--CHHHHHHHHHHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHH
Confidence 763 2334666666542 12334433 88899999999999986553
No 147
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=33.55 E-value=1.2e+02 Score=28.88 Aligned_cols=44 Identities=25% Similarity=0.552 Sum_probs=24.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLE-----KENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe-----~EnkkLeQel~~LksQI~sL~~q 48 (360)
|.+.+|..++.+.++..+-|. ++.-+++++|.+.+++|.+++++
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666654444332 22334556666666666666655
No 148
>PHA03247 large tegument protein UL36; Provisional
Probab=33.52 E-value=55 Score=41.69 Aligned_cols=11 Identities=9% Similarity=0.006 Sum_probs=4.5
Q ss_pred HHHHHHHHhhc
Q 047848 284 MQALQDRRACW 294 (360)
Q Consensus 284 m~~l~dk~Er~ 294 (360)
|.-|++.-+|+
T Consensus 3111 lAlLi~ACr~i 3121 (3151)
T PHA03247 3111 LAVLIEACRRI 3121 (3151)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 149
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=33.10 E-value=21 Score=29.93 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+..+..+...|..++..|+.++..|+.+
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~ 54 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQ 54 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333334444444444444433
No 150
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.00 E-value=1.5e+02 Score=22.97 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+.+..++.+|+.+..++..++.-|.
T Consensus 14 ~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 14 SSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667666666666665553
No 151
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.74 E-value=1.4e+02 Score=25.21 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
..+|+.+..+++-+++.+++++.++.
T Consensus 67 v~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 67 VHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 152
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.73 E-value=1.5e+02 Score=26.81 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+.+.-|..|+++.+ ..++++++.+++|.+.+.++..+++.+...
T Consensus 91 ~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 91 SADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544 667778888888887777777777766543
No 153
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.73 E-value=84 Score=30.06 Aligned_cols=28 Identities=36% Similarity=0.544 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
....++.+||++|++++++|++++..++
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~ 96 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELE 96 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888664
No 154
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=32.68 E-value=94 Score=36.52 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=19.9
Q ss_pred HHHHHHHhhhhcccChHHHHHHHHhhHHH-hhhhhhhHHhhhhC
Q 047848 196 INFLIKEVESAVFDQISEVEAFVKWLDGE-LSSLVDERAVLKHF 238 (360)
Q Consensus 196 I~~L~~~i~~~~~~d~~~v~~Fv~wld~e-Ls~L~DEraVLk~F 238 (360)
|..|.++.+.. .-.+++-+=.+.+|.| =+.+.||..-+.-.
T Consensus 1408 vrnleKe~~~l--~~le~~nE~ldr~~~ernt~~i~~Q~r~r~l 1449 (1629)
T KOG1892|consen 1408 VRNLEKENTAL--MSLEAVNEELDRLDAERNTMTIDEQRRYREL 1449 (1629)
T ss_pred hhhHHHhhhhc--cchhhHHHHHHhhhhhhcchhhHHHHHHhhc
Confidence 56666666553 3334444444445422 23456665444433
No 155
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=32.39 E-value=1.1e+02 Score=32.50 Aligned_cols=10 Identities=20% Similarity=0.508 Sum_probs=8.6
Q ss_pred hHHHHHhhCC
Q 047848 54 SMLWKKLQNP 63 (360)
Q Consensus 54 s~l~Kkiq~~ 63 (360)
+.+|+.||++
T Consensus 102 p~~~~~L~r~ 111 (487)
T KOG4672|consen 102 PVMFSHLQRR 111 (487)
T ss_pred hHHHHHHHHH
Confidence 5889999888
No 156
>PF15604 Toxin_43: Putative toxin 43
Probab=32.20 E-value=1.7e+02 Score=26.86 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHH---------hcCCCCH
Q 047848 320 QMKVSSLRLAKEYMKR---------FAGGFDA 342 (360)
Q Consensus 320 kiK~asv~la~~ymkr---------faggfd~ 342 (360)
..+..+...|+++|+- +|||.|.
T Consensus 74 ~a~~~A~~~A~~~m~tlAALHNPD~iAGG~~~ 105 (152)
T PF15604_consen 74 EAEIQAEKQAKEWMKTLAALHNPDMIAGGKDS 105 (152)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhcCCCcc
Confidence 3677889999999999 9999997
No 157
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=31.78 E-value=1.2e+02 Score=27.67 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=3.7
Q ss_pred HHHHHHhhhh
Q 047848 37 RLKAQISSLK 46 (360)
Q Consensus 37 ~LksQI~sL~ 46 (360)
.|.++|.+|+
T Consensus 93 ~L~~~v~~Le 102 (158)
T PF09744_consen 93 DLQSQVEQLE 102 (158)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 158
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=31.67 E-value=2.4e+02 Score=22.36 Aligned_cols=44 Identities=20% Similarity=0.241 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
.+.++..|...|+ ..++-.+.+|+.|.++-.....++......+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~ 49 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEEN 49 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888 4467777777777765555555555444333
No 159
>PRK11020 hypothetical protein; Provisional
Probab=31.60 E-value=1.8e+02 Score=25.76 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 6 DDSRIDSFQKERDARIALLE--------KENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe--------~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
...||..|-..||..+..|- .-..++..|+..|..+|.+|+.+-...=|..-++|+.+
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~l 68 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKL 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45678888888882222221 22445566777777788777766433335555666666
No 160
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=31.42 E-value=1e+02 Score=26.01 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 10 IDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 10 I~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+.+-++-|+.++..|+...++|++.+..+..++..+...
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666778888888888888888888888876644
No 161
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.32 E-value=1.1e+02 Score=23.98 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
..++.++.++.+++++..+|+.++..|..
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566666666666666666666666664
No 162
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=31.23 E-value=1.4e+02 Score=24.37 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhh
Q 047848 184 AIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDE 231 (360)
Q Consensus 184 aIk~Dve~~~~~I~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DE 231 (360)
.++...+-+..++.-|..+-......|+++|...+.....-+..|..-
T Consensus 9 ~L~~~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~l 56 (143)
T PF05130_consen 9 LLEEQIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELREL 56 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888888888889999998888877666555443
No 163
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=31.18 E-value=1.9e+02 Score=23.74 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhc--ccChHHHHHHHHhhHHHhhhhh
Q 047848 181 YLSAIKTDVKKQKEFINFLIKEVESAV--FDQISEVEAFVKWLDGELSSLV 229 (360)
Q Consensus 181 ~l~aIk~Dve~~~~~I~~L~~~i~~~~--~~d~~~v~~Fv~wld~eLs~L~ 229 (360)
-|+.|.+||..-..-+..|-..|.... ..+++++.+-++-+...|..|.
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~ 55 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLN 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999998886654 6777777776666666666554
No 164
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.98 E-value=1.2e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 7 DSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 7 e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
...+.+-.+.|+....+++++..++++++..++.++..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444778899999999999999999888765
No 165
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.77 E-value=92 Score=30.62 Aligned_cols=38 Identities=34% Similarity=0.523 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhhhhhhhHH
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISS----LKAHDNERKSML 56 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~s----L~~q~~erqs~l 56 (360)
....+|++||++|++++.+|+++... ++..|.+.+..|
T Consensus 66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 166
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.59 E-value=1.7e+02 Score=22.74 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
+|.+.+++|..+..+|.+++..+++.++..+.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777777777765553
No 167
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.57 E-value=2.3e+02 Score=29.49 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 14 QKERDARIALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 14 KkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
...|..+.++|..-.++|+.++.+|+.|.++|..++
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 333446778888888888888888888888887764
No 168
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=30.38 E-value=76 Score=33.33 Aligned_cols=19 Identities=11% Similarity=-0.027 Sum_probs=15.0
Q ss_pred hhhhcccChHHHHHHHHhh
Q 047848 203 VESAVFDQISEVEAFVKWL 221 (360)
Q Consensus 203 i~~~~~~d~~~v~~Fv~wl 221 (360)
++.|.-.||+-|.+|.+--
T Consensus 254 LTTFNEvDMS~lm~mRk~y 272 (457)
T KOG0559|consen 254 LTTFNEVDMSNLMEMRKQY 272 (457)
T ss_pred hhhhhhhhHHHHHHHHHHH
Confidence 4677888999999988743
No 169
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.17 E-value=79 Score=35.20 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHH--------------HHHHHHHHHHHHHHHhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKE--------------NFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~E--------------nkkLeQel~~LksQI~sL~~ 47 (360)
+|.+|++|+.+|. ...+||+.+ +.+++++..+|+.+++.|..
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~ 481 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ 481 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888777 335556555 44455555555555555553
No 170
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.84 E-value=1.2e+02 Score=23.68 Aligned_cols=29 Identities=21% Similarity=0.176 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 17 RDARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 17 Lds~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
++.|...|+.+++..+++....+.++...
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566667777777777777777776654
No 171
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=29.78 E-value=2.2e+02 Score=25.40 Aligned_cols=10 Identities=30% Similarity=0.208 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 047848 23 LLEKENFELR 32 (360)
Q Consensus 23 eLe~EnkkLe 32 (360)
+++.+++.++
T Consensus 18 ~~e~~~K~le 27 (143)
T PF12718_consen 18 ELEAKVKQLE 27 (143)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 172
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=29.34 E-value=86 Score=28.79 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=47.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHHh
Q 047848 183 SAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREA 252 (360)
Q Consensus 183 ~aIk~Dve~~~~~I~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalReA 252 (360)
..+...|.+.-+-+..++.++..|...=..|+-.|-...+.--+.|.++.+.+..+ +..++.+|.+
T Consensus 113 ~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L----~~~I~~~~~~ 178 (184)
T PF05791_consen 113 EDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQL----QKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHH----HHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHH----HHHHHHHHHH
Confidence 34456667777777777788888887777888888888888888888888888877 6666666653
No 173
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=29.32 E-value=2e+02 Score=23.51 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHhh
Q 047848 33 QEVLRLKAQISSLKAHDNERKSMLWKKLQ 61 (360)
Q Consensus 33 Qel~~LksQI~sL~~q~~erqs~l~Kkiq 61 (360)
+++..++.+|..|+.+-..-++...+.|-
T Consensus 39 ~Em~~ir~~v~eLE~~h~kmK~~YEeEI~ 67 (79)
T PF08581_consen 39 QEMQQIRQKVYELEQAHRKMKQQYEEEIA 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555443333334444443
No 174
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=29.24 E-value=1e+02 Score=31.76 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.++..++++++++++++..+++++..|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 36 IQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555555554
No 175
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=29.19 E-value=96 Score=26.96 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=23.8
Q ss_pred HHHHHHHHHH---hcCCCCHHHHHHHHHHHhhh
Q 047848 326 LRLAKEYMKR---FAGGFDAETIQAFEELKKVG 355 (360)
Q Consensus 326 v~la~~ymkr---faggfd~e~~~afeelr~~~ 355 (360)
++-...++-| -.|||+.|++..|++|++.-
T Consensus 25 l~~~a~e~v~~aE~~Gg~~~e~~~~~~~l~~k~ 57 (116)
T PF14208_consen 25 LNTFAQELVRQAEREGGVTSETVDRIEDLSEKT 57 (116)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3444555666 78999999999999999873
No 176
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.15 E-value=1.7e+02 Score=34.44 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=49.5
Q ss_pred CCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 3 PEDDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 3 ~gd~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
+++.+++|..|+.++. ..+.+|+.+..+.+..+..++..+..|..++.+.++.+-++..+.
T Consensus 656 ~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em 719 (1074)
T KOG0250|consen 656 EFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEM 719 (1074)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999998888 445678888888888999999999999999988887777766655
No 177
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=29.11 E-value=12 Score=31.07 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=48.9
Q ss_pred hhhhhhHHHhhhcccccCCcHHHHHHHHHHHHH-HHhhcchhhhhhhhccC-CCccccccchhhHHHHHHHHHHHHHHHH
Q 047848 257 RDLKNLEQEVSSFEDNQKESLPQATRKMQALQD-RRACWSKGTGKKYRDFQ-IPCDWMMDSGLIGQMKVSSLRLAKEYMK 334 (360)
Q Consensus 257 ~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~d-k~Er~rd~~~~ryk~~~-Ip~~wmld~gii~kiK~asv~la~~ymk 334 (360)
.+-.+++-+.-+|..+| |....|..|.++++ .++.+-+.....|++.+ +..+.|-|..++.-|-.-- ..||
T Consensus 16 L~~~gi~~~~~d~~k~p--~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p-----~Lik 88 (110)
T PF03960_consen 16 LEENGIEYEFIDYKKEP--LSREELRELLSKLGNGPDDLINTRSKTYKELGKLKKDDLSDEELIELLLENP-----KLIK 88 (110)
T ss_dssp HHHTT--EEEEETTTS-----HHHHHHHHHHHTSSGGGGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSG-----GGB-
T ss_pred HHHcCCCeEeehhhhCC--CCHHHHHHHHHHhcccHHHHhcCccchHhhhhhhhhhhhhhHHHHHHHHhCh-----hhee
Confidence 33344443444555553 55666777777766 35666666668999998 6666655555544433221 2366
Q ss_pred H--------hcCCCCHHHHHHH
Q 047848 335 R--------FAGGFDAETIQAF 348 (360)
Q Consensus 335 r--------faggfd~e~~~af 348 (360)
| +.-||+.+.+++|
T Consensus 89 RPIi~~~~~~~iG~~~~~~~~f 110 (110)
T PF03960_consen 89 RPIIVDGKKAVIGFNEEEIQEF 110 (110)
T ss_dssp SSEEEETTEEEESSSGGGGGGG
T ss_pred CCEEEECCEEEEeCCHHHHhhC
Confidence 6 7779999988776
No 178
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=28.87 E-value=1.6e+02 Score=27.46 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
.+.++|+.|+.+++.+|..|..-+.+.+.+..+.+
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLK 63 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELK 63 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34556666666666666666666666555544444
No 179
>PF08472 S6PP_C: Sucrose-6-phosphate phosphohydrolase C-terminal; InterPro: IPR013679 This is the Sucrose-6-phosphate phosphohydrolase (S6PP or SPP) C-terminal domain [] as found in plant sucrose phosphatases. These enzymes irreversibly catalyse the last step in sucrose synthesis following the formation of Sucrose-6-Phosphate via sucrose-phosphate synthase (SPS). ; GO: 0000287 magnesium ion binding, 0050307 sucrose-phosphate phosphatase activity, 0005986 sucrose biosynthetic process
Probab=28.67 E-value=1.4 Score=39.48 Aligned_cols=69 Identities=23% Similarity=0.476 Sum_probs=48.0
Q ss_pred HHHhhhhhhHHHHHHHHHHhHHHH------HHHHHHhhhhc--ccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCC
Q 047848 173 GEIENRSTYLSAIKTDVKKQKEFI------NFLIKEVESAV--FDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWP 242 (360)
Q Consensus 173 gEIeNRS~~l~aIk~Dve~~~~~I------~~L~~~i~~~~--~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wP 242 (360)
||++|-..|++-+|+.+-..|.|| ..|-..|.... |-|. +=-.|.-|+|..++.=+.----|.+|..|=
T Consensus 39 gEVe~se~~~~~LK~~~~~~g~~vhPsGvE~slh~~Id~Lr~~yGdk-qgK~frvWVDrv~~~~v~~~~WLvkFdkWE 115 (133)
T PF08472_consen 39 GEVENSEEYFQRLKSVCHPNGTFVHPSGVEKSLHDSIDALRSCYGDK-QGKKFRVWVDRVRSTQVGSDTWLVKFDKWE 115 (133)
T ss_pred cccCCcHHHHHHhhhhhccCcCEEccccccccHHHHHHHHHHHhhhh-cCcEEEEEEEeeeEEeecCccEEEEeeehh
Confidence 688999999999999998888887 34555554443 2221 224688899998887555555667776663
No 180
>CHL00171 cpcB phycocyanin beta subunit; Reviewed
Probab=28.64 E-value=37 Score=31.42 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=24.8
Q ss_pred hhhhccCCCccccccchhhHHHHHHHHHHHHH
Q 047848 300 KKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKE 331 (360)
Q Consensus 300 ~ryk~~~Ip~~wmld~gii~kiK~asv~la~~ 331 (360)
--|+.+|+|..||.. =+..||.+|+.++..
T Consensus 115 E~Y~~lgvP~~~~i~--al~~mk~~al~~~~~ 144 (172)
T CHL00171 115 ETYQALGVPGSSVAV--AVQKMKEAAVSLAND 144 (172)
T ss_pred HHHHHhCCCchHHHH--HHHHHHHHHHHHhcC
Confidence 458999999999887 567899999888743
No 181
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=28.56 E-value=1.2e+02 Score=32.36 Aligned_cols=17 Identities=29% Similarity=-0.031 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhhcccCh
Q 047848 195 FINFLIKEVESAVFDQI 211 (360)
Q Consensus 195 ~I~~L~~~i~~~~~~d~ 211 (360)
-|++=+.+|.-+...++
T Consensus 262 ~i~e~~~~v~~~~~~~~ 278 (487)
T KOG4672|consen 262 RINENITSVPLLPPPGI 278 (487)
T ss_pred ccccccccccccCCCCC
Confidence 34444455544444443
No 182
>CHL00172 cpeB phycoerythrin beta subunit; Provisional
Probab=28.53 E-value=34 Score=32.04 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=25.5
Q ss_pred hhhhccCCCccccccchhhHHHHHHHHHHHHH
Q 047848 300 KKYRDFQIPCDWMMDSGLIGQMKVSSLRLAKE 331 (360)
Q Consensus 300 ~ryk~~~Ip~~wmld~gii~kiK~asv~la~~ 331 (360)
--|+++|+|..||.. -+..||.+++..+..
T Consensus 115 E~Y~sLgVP~~~~~~--~~~~mk~aa~~~~~~ 144 (177)
T CHL00172 115 ETYIALGVPANSSAR--AVSIMKASAVAFINN 144 (177)
T ss_pred HHHHHHCCCchHHHH--HHHHHHHHHHHHhcC
Confidence 469999999999887 678999999887754
No 183
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=28.51 E-value=2.1e+02 Score=23.93 Aligned_cols=11 Identities=9% Similarity=0.320 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 047848 8 SRIDSFQKERD 18 (360)
Q Consensus 8 ~eI~~LKkeLd 18 (360)
.||.-|..+++
T Consensus 31 eEI~~Lr~qve 41 (86)
T PF12711_consen 31 EEIQLLREQVE 41 (86)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 184
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=28.50 E-value=4.1e+02 Score=27.45 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhhhh-----hccccCCCCCCC-----------chhhhhhhHHHHHhhhhhhHHHHHHH----HHHhHHHH
Q 047848 137 PEVVELYRSLTRKD-----AHMENRSNTTAA-----------PVIAFTRNMIGEIENRSTYLSAIKTD----VKKQKEFI 196 (360)
Q Consensus 137 peVVelY~sLkkk~-----~k~d~~~~s~gk-----------~~~~~~~~iLgEIeNRS~~l~aIk~D----ve~~~~~I 196 (360)
.+|+++-.||++.= +-....|..... ..+....+|+.||+.+-....+.-+. +..+.+-+
T Consensus 206 ~ema~lL~sLt~HfDqC~~a~~~~eg~~~~~~e~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~ 285 (412)
T PF04108_consen 206 QEMASLLESLTNHFDQCVTAVRHTEGEPMSEEERQEMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHI 285 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998853 111100111110 11223468899999886665555555 44444444
Q ss_pred HHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhhHHhhhhC
Q 047848 197 NFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHF 238 (360)
Q Consensus 197 ~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F 238 (360)
..+...+ ..-+..+..|-.++.+-+....|=..+++.|
T Consensus 286 ~~~~~~~----~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~ 323 (412)
T PF04108_consen 286 RELYNAL----SEALEELRKFGERLPSYLAAFHDFEERWEEE 323 (412)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 3334555556666655555544444444333
No 185
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=28.16 E-value=2.2e+02 Score=22.89 Aligned_cols=9 Identities=11% Similarity=0.482 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 047848 10 IDSFQKERD 18 (360)
Q Consensus 10 I~~LKkeLd 18 (360)
++.|.+.+.
T Consensus 12 le~Lq~~y~ 20 (70)
T PF04899_consen 12 LEELQQSYE 20 (70)
T ss_pred HHHHHHHHH
Confidence 334444443
No 186
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.03 E-value=2.2e+02 Score=27.83 Aligned_cols=14 Identities=21% Similarity=0.638 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhhh
Q 047848 137 PEVVELYRSLTRKD 150 (360)
Q Consensus 137 peVVelY~sLkkk~ 150 (360)
|++..+|+.+++.-
T Consensus 174 ~ell~~yeri~~~~ 187 (239)
T COG1579 174 PELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999988754
No 187
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.85 E-value=3.1e+02 Score=30.22 Aligned_cols=9 Identities=0% Similarity=-0.079 Sum_probs=3.8
Q ss_pred HHhhhcccc
Q 047848 264 QEVSSFEDN 272 (360)
Q Consensus 264 ~e~s~~~d~ 272 (360)
..+.+|..+
T Consensus 567 ~~~~~~~~~ 575 (620)
T PRK14954 567 ESFYGIPLK 575 (620)
T ss_pred HHHhcCCce
Confidence 344444433
No 188
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=27.67 E-value=1.9e+02 Score=21.50 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=31.0
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhh
Q 047848 169 RNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVES 205 (360)
Q Consensus 169 ~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~ 205 (360)
..+++.|.-=..-+..+|+++..+..-+.+|+..|..
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777888999999999999999998865
No 189
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.67 E-value=2.8e+02 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 047848 22 ALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~ 43 (360)
...+...++|+.++..|+..|.
T Consensus 193 e~aE~~v~~Le~~id~le~eL~ 214 (237)
T PF00261_consen 193 EFAERRVKKLEKEIDRLEDELE 214 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 190
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=27.64 E-value=14 Score=32.01 Aligned_cols=26 Identities=19% Similarity=0.566 Sum_probs=23.8
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHH
Q 047848 309 CDWMMDSGLIGQMKVSSLRLAKEYMKR 335 (360)
Q Consensus 309 ~~wmld~gii~kiK~asv~la~~ymkr 335 (360)
+|||+|.+.++ =+.-+|.||...|..
T Consensus 38 VDWLv~~~~~i-~R~EAv~l~q~Lmd~ 63 (109)
T cd04444 38 VDWLISNSFAA-SRLEAVTLASMLMEE 63 (109)
T ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhC
Confidence 58999999988 788899999999997
No 191
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.63 E-value=2e+02 Score=22.91 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
..+..|+.+.+.++.++.+++.++.
T Consensus 76 ~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 76 KEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554
No 192
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.49 E-value=2.4e+02 Score=28.37 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
..+++.+.+.++..|....+++..+..++.+.+
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555544444
No 193
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=27.41 E-value=1.2e+02 Score=25.10 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQ 61 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq 61 (360)
|.+|..++...++||.+|+.-+.+|++-.+-+ +.+-|++|
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKY-t~LnkkLq 46 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLIKY-TELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 44555555555556666666666666554444 34455544
No 194
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=27.36 E-value=2.2e+02 Score=25.81 Aligned_cols=12 Identities=17% Similarity=0.028 Sum_probs=5.0
Q ss_pred hhhHHHHHhhCC
Q 047848 52 RKSMLWKKLQNP 63 (360)
Q Consensus 52 rqs~l~Kkiq~~ 63 (360)
-++.+..+|+.+
T Consensus 121 e~~~~~~ki~e~ 132 (177)
T PF07798_consen 121 EQAKQELKIQEL 132 (177)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 195
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=26.97 E-value=2.8e+02 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047848 7 DSRIDSFQKERD-ARIALLEKENFELR 32 (360)
Q Consensus 7 e~eI~~LKkeLd-s~n~eLe~EnkkLe 32 (360)
..+|..|++.|. +.|.||+++...|+
T Consensus 53 k~ki~eLke~lK~~~NAEleekll~lq 79 (160)
T PF03978_consen 53 KKKINELKEDLKDVSNAELEEKLLKLQ 79 (160)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456778888888 88888888876665
No 196
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=26.90 E-value=1e+02 Score=35.43 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=57.9
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhh----------------hcccCh---HHHHHHHHhhHHHhhhhhh
Q 047848 170 NMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVES----------------AVFDQI---SEVEAFVKWLDGELSSLVD 230 (360)
Q Consensus 170 ~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~----------------~~~~d~---~~v~~Fv~wld~eLs~L~D 230 (360)
-+++||+.---|+.+|..-.-..-+|...|+.-..+ .....+ -.+++|-+.|+.+.+.|..
T Consensus 744 ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~ 823 (890)
T KOG0035|consen 744 YVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDT 823 (890)
T ss_pred HHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcH
Confidence 468888888888888887655555666555543322 222222 5678999999999999999
Q ss_pred hHHhhhhCCCCCcchh
Q 047848 231 ERAVLKHFPQWPERKA 246 (360)
Q Consensus 231 EraVLk~F~~wPe~K~ 246 (360)
|.+|...|++|-..|.
T Consensus 824 ~~r~i~s~~d~~ktk~ 839 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA 839 (890)
T ss_pred HHHHHHHHHHHHcchh
Confidence 9999999999998888
No 197
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=26.83 E-value=1.9e+02 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 18 DARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 18 ds~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+.|+.+|+....=.+..+.+|+..|.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~ 28 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVT 28 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444444444444444
No 198
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=26.49 E-value=5.7e+02 Score=24.38 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=51.7
Q ss_pred hhhhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhhhc---ccChHHH-HHHHHhhHHHhhhhhhhHHhhhhCCCCC
Q 047848 167 FTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAV---FDQISEV-EAFVKWLDGELSSLVDERAVLKHFPQWP 242 (360)
Q Consensus 167 ~~~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~~~---~~d~~~v-~~Fv~wld~eLs~L~DEraVLk~F~~wP 242 (360)
....||.||++|. |...+..++..-..-..|-.+|...= ..+-..+ ....++|...-+.|.|=+..|..=
T Consensus 131 ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA---- 204 (264)
T PF06008_consen 131 EAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEA---- 204 (264)
T ss_pred HHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3468999999996 88888888887777788877777642 1222233 334555555555666666555443
Q ss_pred cchhhHHHHhhhhhhh
Q 047848 243 ERKADTLREAACNYRD 258 (360)
Q Consensus 243 e~K~dalReAa~~y~~ 258 (360)
.+..|+|...+..
T Consensus 205 ---~~~~~ea~~ln~~ 217 (264)
T PF06008_consen 205 ---QNKTREAEDLNRA 217 (264)
T ss_pred ---HHHHHHHHHHHHH
Confidence 3444555544443
No 199
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.45 E-value=1.7e+02 Score=25.34 Aligned_cols=13 Identities=8% Similarity=0.161 Sum_probs=5.2
Q ss_pred chhHHHHHHHHHH
Q 047848 5 DDDSRIDSFQKER 17 (360)
Q Consensus 5 d~e~eI~~LKkeL 17 (360)
|+...+..++.++
T Consensus 5 elfd~l~~le~~l 17 (110)
T PRK13169 5 EIFDALDDLEQNL 17 (110)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 200
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.29 E-value=2.4e+02 Score=23.20 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 047848 8 SRIDSFQKERD 18 (360)
Q Consensus 8 ~eI~~LKkeLd 18 (360)
.+|+.|+..|+
T Consensus 23 ~ei~~LQ~sL~ 33 (80)
T PF10224_consen 23 QEILELQDSLE 33 (80)
T ss_pred HHHHHHHHHHH
Confidence 34444444444
No 201
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=26.21 E-value=51 Score=34.16 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=2.6
Q ss_pred hhhHHHH
Q 047848 245 KADTLRE 251 (360)
Q Consensus 245 K~dalRe 251 (360)
++..|++
T Consensus 305 ~k~~L~~ 311 (377)
T KOG1945|consen 305 KKKLLGR 311 (377)
T ss_pred HHHHhhc
Confidence 3333333
No 202
>PF03586 Herpes_UL36: Herpesvirus UL36 tegument protein; InterPro: IPR005210 The UL36 open reading frame (ORF) encodes the largest Human herpesvirus 1 (HHV-1) protein, a 270 kDa polypeptide designated VP1/2, which is also a component of the virion tegument. A null mutation in the UL36 gene of herpes simplex virus type 1 results in accumulation of unenveloped DNA-filled capsids in the cytoplasm of infected cells []. The region which defines these sequences only covers a small central part of this large protein.; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity
Probab=26.11 E-value=3.1e+02 Score=27.24 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhccc
Q 047848 192 QKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFED 271 (360)
Q Consensus 192 ~~~~I~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d 271 (360)
+-++|..|...+.. +-.|.+||++--.=-....+|++.|... ++|+++-...--.+|..-+.+++.-.
T Consensus 139 y~~~V~~l~~dL~~-----vP~L~kYVdFYrrgy~~F~~~~~~L~~l------Radv~~A~G~~~~El~~AlE~~t~vr- 206 (253)
T PF03586_consen 139 YYDAVGRLSGDLMQ-----VPELAKYVDFYRRGYEEFEEERARLSAL------RADVLQASGSVPLELSRALEEVTRVR- 206 (253)
T ss_pred HHHHHHHHHHHHHh-----ChhHHHHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHcCcchHHHHHHHHHHHHHc-
Confidence 44566666665544 6678888888888888889999998866 78888777766666655555555443
Q ss_pred cc-------------CCcHHHHHHHHHHHHHHHh
Q 047848 272 NQ-------------KESLPQATRKMQALQDRRA 292 (360)
Q Consensus 272 ~p-------------~~p~~~~L~Km~~l~dk~E 292 (360)
+| ..|-..+|.++-.++++..
T Consensus 207 ~pe~A~~~L~~GV~l~~PS~~~l~~~~~~Le~~d 240 (253)
T PF03586_consen 207 DPEAAKRALEYGVSLIIPSEDALREAVAYLERFD 240 (253)
T ss_pred CHHHHHHHHHcCCcccCChHHHHHHHHHHHHhhc
Confidence 22 2356777777777776654
No 203
>PRK09039 hypothetical protein; Validated
Probab=26.10 E-value=2.3e+02 Score=28.69 Aligned_cols=10 Identities=30% Similarity=0.361 Sum_probs=5.2
Q ss_pred ccchHHHHHH
Q 047848 133 VRRVPEVVEL 142 (360)
Q Consensus 133 vrRspeVVel 142 (360)
..|+-.|..+
T Consensus 290 ~~RA~aV~~~ 299 (343)
T PRK09039 290 SARAISVVKF 299 (343)
T ss_pred HHHHHHHHHH
Confidence 4455555533
No 204
>TIGR01339 phycocy_beta phycocyanin, beta subunit. This model excludes the closely related phycoerythrocyanin beta subunit.
Probab=25.98 E-value=42 Score=31.18 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=24.2
Q ss_pred hhhhccCCCccccccchhhHHHHHHHHHHHH
Q 047848 300 KKYRDFQIPCDWMMDSGLIGQMKVSSLRLAK 330 (360)
Q Consensus 300 ~ryk~~~Ip~~wmld~gii~kiK~asv~la~ 330 (360)
--|+.+|+|..||.. -+..||.+|+.+..
T Consensus 113 E~Y~aLgVP~~~~v~--al~~mK~~~~~~~~ 141 (170)
T TIGR01339 113 ETYLALGTPGSSVAA--GVQKMKDAALAIVN 141 (170)
T ss_pred HHHHHhCCCchHHHH--HHHHHHHHHHHHhc
Confidence 458999999999877 57789999988775
No 205
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=25.83 E-value=2e+02 Score=26.50 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
..|+.+...+...+..|+.+|..|+
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~ 125 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELE 125 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 206
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.81 E-value=2e+02 Score=24.58 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
|+..++.=.+.+.+ .-+.+++++|+.|++++.+.+++.-
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444455555 3488899999999998888777553
No 207
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=25.75 E-value=1.6e+02 Score=28.78 Aligned_cols=33 Identities=39% Similarity=0.463 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
.++.+|+.||..|+.++.+|+.++..|.....+
T Consensus 222 ~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 222 HRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 668888888888888888888888877655443
No 208
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=25.68 E-value=2.6e+02 Score=22.32 Aligned_cols=18 Identities=39% Similarity=0.503 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQ 33 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQ 33 (360)
+-|..|.+|..|.++|..
T Consensus 9 EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334566666666666653
No 209
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.43 E-value=3.8e+02 Score=21.95 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+.+..|..|+-.+- ..+++|..........+.++..|+.
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr 46 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLR 46 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444433 3344444444444444555555444
No 210
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=25.32 E-value=53 Score=27.95 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 24 LEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 24 Le~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
++.++.+|+.++.+....|.+|+.|..+.+
T Consensus 49 ~e~k~~~le~~l~e~~~~l~~lq~qL~~LK 78 (100)
T PF06428_consen 49 LEEKNEQLEKQLKEKEALLESLQAQLKELK 78 (100)
T ss_dssp HHHHHHHHHHCTTHHCHCCCHCTSSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555554443
No 211
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=25.30 E-value=1.8e+02 Score=23.58 Aligned_cols=35 Identities=34% Similarity=0.355 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhh
Q 047848 18 DARIALLEKENFELRQEVLRLKAQISSLKAH-DNER 52 (360)
Q Consensus 18 ds~n~eLe~EnkkLeQel~~LksQI~sL~~q-~~er 52 (360)
...+++++.+..+|+.+..+|+.++..|..+ .+|+
T Consensus 41 ~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~ 76 (97)
T PF04999_consen 41 FYELQQLEKEIDQLQEENERLRLEIATLSSPSRIER 76 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 3557888888888888888888888888854 4443
No 212
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.12 E-value=2.4e+02 Score=28.91 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh
Q 047848 30 ELRQEVLRLKAQISSLKAHDNERKS 54 (360)
Q Consensus 30 kLeQel~~LksQI~sL~~q~~erqs 54 (360)
+.+.++++++.|+.+++..+.+.+.
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888877766666653
No 213
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.11 E-value=2.8e+02 Score=23.00 Aligned_cols=49 Identities=12% Similarity=0.359 Sum_probs=36.4
Q ss_pred HHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccc
Q 047848 214 VEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDN 272 (360)
Q Consensus 214 v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~ 272 (360)
+-+..+.++++|.--+.+-..|... -+.++.-|.+++.+...+..+-.+
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~m----------N~~~~~kY~~~~~~~~~l~~~~~~ 53 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENM----------NKATSLKYKKMKDIAAGLEKNLED 53 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999888888888777 677888888887776666655444
No 214
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=25.10 E-value=8.6e+02 Score=25.97 Aligned_cols=33 Identities=15% Similarity=0.359 Sum_probs=24.9
Q ss_pred ccChHHHHHHHHh--------hHHHhhhhhhhHHhhhhCCC
Q 047848 208 FDQISEVEAFVKW--------LDGELSSLVDERAVLKHFPQ 240 (360)
Q Consensus 208 ~~d~~~v~~Fv~w--------ld~eLs~L~DEraVLk~F~~ 240 (360)
.++..++..|++- -+.||...|.|++-|.+-++
T Consensus 263 ~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQed 303 (426)
T smart00806 263 RKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQED 303 (426)
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666642 47999999999999999833
No 215
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=25.09 E-value=1.4e+02 Score=27.27 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=33.1
Q ss_pred HHHHhHHHHHHHHHHhhhhcccChHHHHHHHHhhHHH
Q 047848 188 DVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGE 224 (360)
Q Consensus 188 Dve~~~~~I~~L~~~i~~~~~~d~~~v~~Fv~wld~e 224 (360)
+...+..|+.|+..-+-.+.|..++||+-.++.+|..
T Consensus 150 ~~~~~l~~~~Fla~nLA~l~y~~~~E~l~vi~~i~~i 186 (187)
T PF12830_consen 150 SSPSDLDFLLFLAENLATLPYQTQDEVLYVIHHIDRI 186 (187)
T ss_pred cchhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhh
Confidence 3567788999999999999999999999999999864
No 216
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=24.92 E-value=1.6e+02 Score=34.44 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 8 SRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 8 ~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
..+.++.++++ +++.+|+....+|..++..++++|..|+.|
T Consensus 396 ~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 396 QDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666 566666666666666666666666666655
No 217
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=24.90 E-value=4e+02 Score=29.94 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=54.2
Q ss_pred hhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhhcchhhhhhhhccCCCccccccchhhHH-----------HHHH
Q 047848 256 YRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRDFQIPCDWMMDSGLIGQ-----------MKVS 324 (360)
Q Consensus 256 y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er~rd~~~~ryk~~~Ip~~wmld~gii~k-----------iK~a 324 (360)
...|++....++.++.+-..|+...+.+|..-+.+|+++ ...|+-.++ +++.+ .+.-
T Consensus 644 ~~~L~~~a~~l~~~~~~~v~pl~~~~~~L~~~l~~L~~~-------~~~l~~~i~-----~ll~~v~~aq~fL~~~~~~i 711 (806)
T PF05478_consen 644 RNALKNEAQNLRAIQKELVSPLEQLVSKLNQSLKKLDSL-------SSNLQNSIN-----ILLDAVQRAQDFLRNNGSEI 711 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh-------cchHHHHHH-----HHHHHHHHHHHHHHHhhHHH
Confidence 345566666777777766678888888888877777755 122222221 22222 2333
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Q 047848 325 SLRLAKEYMKRFAGGFDAETIQAFEELKKVG 355 (360)
Q Consensus 325 sv~la~~ymkrfaggfd~e~~~afeelr~~~ 355 (360)
--.+++.|+.+..|-|+.=.-.+.++++..+
T Consensus 712 i~~~~~~~~~~~~~~~~qY~~~v~~~~~~~v 742 (806)
T PF05478_consen 712 INNESKNFTDRILGYFDQYIDWVISEITNDV 742 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3446777777777888877777777776543
No 218
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=24.81 E-value=3.5e+02 Score=25.15 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 047848 26 KENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 26 ~EnkkLeQel~~LksQI~sL~~ 47 (360)
.+++.|++++.+|++++..+..
T Consensus 110 ~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 110 EELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555554443
No 219
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.76 E-value=2e+02 Score=27.33 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=44.0
Q ss_pred HHHhhhhhhhHHhhhhCCCCCcchhhHHHHhhhhhhhh--hhhHHH-hhhcccccCCcHHHHHHHHH-------HHHHHH
Q 047848 222 DGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDL--KNLEQE-VSSFEDNQKESLPQATRKMQ-------ALQDRR 291 (360)
Q Consensus 222 d~eLs~L~DEraVLk~F~~wPe~K~dalReAa~~y~~L--~~l~~e-~s~~~d~p~~p~~~~L~Km~-------~l~dk~ 291 (360)
-.+|..|+ -+-|+++ .-||.=++|+.+|--.-..+ +.-... ..-+.+--..|...+|+|+. +++.++
T Consensus 43 Ge~L~~L~--~~~L~Ki-PL~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~DvepI~~~Ldkl~~~~~q~~a~lHkl 119 (187)
T COG3028 43 GEELVDLT--KAALAKI-PLDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRDVEPIRAALDKLRNRHNQQVALLHKL 119 (187)
T ss_pred HHHHHhcC--HHHHhhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444 2568889 78888777777765444331 000001 11122222368999999975 679999
Q ss_pred hhcchhhh
Q 047848 292 ACWSKGTG 299 (360)
Q Consensus 292 Er~rd~~~ 299 (360)
|+.||..+
T Consensus 120 E~~RdrLi 127 (187)
T COG3028 120 EQLRDRLI 127 (187)
T ss_pred HHHHHHHH
Confidence 98886433
No 220
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=24.75 E-value=1.2e+02 Score=32.70 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHH-HHHH-hcCCCCHHHHHHHH
Q 047848 318 IGQMKVSSLRLAKE-YMKR-FAGGFDAETIQAFE 349 (360)
Q Consensus 318 i~kiK~asv~la~~-ymkr-faggfd~e~~~afe 349 (360)
-|.|=..-|+-|++ +++| +.||=++-++..|.
T Consensus 439 sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~ 472 (512)
T TIGR03689 439 SGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLL 472 (512)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHH
Confidence 35555566666664 4566 66666666665554
No 221
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=24.70 E-value=6.1e+02 Score=24.13 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=22.3
Q ss_pred ChHHHHHHHHhhHHHhhhhhhhHHhhhhC
Q 047848 210 QISEVEAFVKWLDGELSSLVDERAVLKHF 238 (360)
Q Consensus 210 d~~~v~~Fv~wld~eLs~L~DEraVLk~F 238 (360)
...+|..+++-+..-.+.|++.+.-|..+
T Consensus 207 ~~~~l~~~v~~l~~~~~~l~~~~~~l~~~ 235 (291)
T TIGR00996 207 RSDQLDRLLDNLATLTAQLADRDDALDDA 235 (291)
T ss_pred hhHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 56778888888888888888877776555
No 222
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=24.68 E-value=82 Score=33.60 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=7.8
Q ss_pred hhhhhHHHHHHH
Q 047848 177 NRSTYLSAIKTD 188 (360)
Q Consensus 177 NRS~~l~aIk~D 188 (360)
-||--|.||..-
T Consensus 455 aRsdLL~aIr~G 466 (518)
T KOG1830|consen 455 ARSDLLAAIRSG 466 (518)
T ss_pred hHHHHHHHHHhc
Confidence 367777777653
No 223
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.66 E-value=2.5e+02 Score=24.19 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.....++.+..++.+++.++..++..+.
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 108 KALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544443
No 224
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=24.57 E-value=2.9e+02 Score=24.96 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
..+..|+.....+..++..|+++..+..+..-+.+++|.-|..-.
T Consensus 81 ~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdn 125 (131)
T KOG1760|consen 81 KLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFGDN 125 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 445666666677777777777777777777777777777666543
No 225
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.56 E-value=4.7e+02 Score=28.72 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047848 21 IALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~ 43 (360)
.++|+.|++.|-+.+.+|+..+.
T Consensus 433 KEql~~EkQeL~~yi~~Le~r~~ 455 (546)
T PF07888_consen 433 KEQLQEEKQELLEYIERLEQRLD 455 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 226
>CHL00090 apcD allophycocyanin gamma subunit
Probab=24.52 E-value=43 Score=30.63 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=21.4
Q ss_pred hhhhccCCCccccccchhhHHHHHHHHHH
Q 047848 300 KKYRDFQIPCDWMMDSGLIGQMKVSSLRL 328 (360)
Q Consensus 300 ~ryk~~~Ip~~wmld~gii~kiK~asv~l 328 (360)
--|+.+|+|..||.. =|..||.+++.+
T Consensus 114 E~Y~~LgvP~~~~v~--al~~mk~~~~~~ 140 (161)
T CHL00090 114 EMYNSLGVPIIGMVD--SIQCLKEAALEV 140 (161)
T ss_pred HHHHHhCCChHHHHH--HHHHHHHHHHHh
Confidence 469999999999887 466788887543
No 227
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.43 E-value=1.6e+02 Score=22.92 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
..++..+..++++++.+++++...|+.++....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 335555555556666666666666555544443
No 228
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=24.33 E-value=2.3e+02 Score=28.55 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSML 56 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l 56 (360)
+..++..++.++. ..|.+|-++...|-.++.-|+.++..++....+.|...
T Consensus 82 lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 82 LKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555 55666666666666666666666666555544444333
No 229
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.25 E-value=2.6e+02 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 17 RDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 17 Lds~n~eLe~EnkkLeQel~~LksQI 42 (360)
|...+..|+++++.+.++..+++..+
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~ 103 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKL 103 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444443333333333333
No 230
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.16 E-value=3.5e+02 Score=25.21 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 23 LLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 23 eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.++.+|++|..++.+|+.++..|+.
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~ 125 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEK 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 231
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=23.92 E-value=44 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=22.9
Q ss_pred hhhhccCCCccccccchhhHHHHHHHHHHHH
Q 047848 300 KKYRDFQIPCDWMMDSGLIGQMKVSSLRLAK 330 (360)
Q Consensus 300 ~ryk~~~Ip~~wmld~gii~kiK~asv~la~ 330 (360)
--|+.+|+|..||.. =+..||.+|+....
T Consensus 115 E~Y~~LgvP~~~~i~--al~~mk~~~~~~~~ 143 (169)
T CHL00089 115 DTYNSLGVPIAPTVR--SIELLKEIIKEEIK 143 (169)
T ss_pred HHHHHhCCCHHHHHH--HHHHHHHHHHHHhC
Confidence 359999999999887 46678888876654
No 232
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=23.87 E-value=2.5e+02 Score=25.43 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhhhhh
Q 047848 34 EVLRLKAQISSLKAHDN 50 (360)
Q Consensus 34 el~~LksQI~sL~~q~~ 50 (360)
...+|+.+|..|+..+-
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444445555554433
No 233
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=23.71 E-value=1.8e+02 Score=30.71 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCccCCCCccccchHHHHHHHHHHhhhhhccccCCCCCCCchhhhhhhHHHHHhh-----------
Q 047848 109 QTPVAFPAPPPPPLPSKFLAGSKTVRRVPEVVELYRSLTRKDAHMENRSNTTAAPVIAFTRNMIGEIEN----------- 177 (360)
Q Consensus 109 ~~~~~~ppppppPpP~~~l~~~~~vrRspeVVelY~sLkkk~~k~d~~~~s~gk~~~~~~~~iLgEIeN----------- 177 (360)
..+..+.|+..||+.+.+.....+....+.-..--++|++-.+-..---+..-........++...|.+
T Consensus 119 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~ 198 (424)
T PF03915_consen 119 AAKPVARPAAAPPPSSAPSSSSSPQSTSKSDLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGD 198 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcccccccccCCCCCcccccccCcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q ss_pred --h----------hhhHHHHHHHHHHhHHHHHHHHHHh------------------hhhcccChHHHHHHH--------H
Q 047848 178 --R----------STYLSAIKTDVKKQKEFINFLIKEV------------------ESAVFDQISEVEAFV--------K 219 (360)
Q Consensus 178 --R----------S~~l~aIk~Dve~~~~~I~~L~~~i------------------~~~~~~d~~~v~~Fv--------~ 219 (360)
| +..-..+-..|..--+.|..|.+.| -....+++.++..|+ +
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkK 278 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKK 278 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Q ss_pred hhHHHhhhhhhhHHhhhhCCCCCcchhhHHHH
Q 047848 220 WLDGELSSLVDERAVLKHFPQWPERKADTLRE 251 (360)
Q Consensus 220 wld~eLs~L~DEraVLk~F~~wPe~K~dalRe 251 (360)
+.+.||...|.|++.|.+- |.-+..|++
T Consensus 279 iWE~EL~~V~eEQqfL~~Q----edL~~DL~e 306 (424)
T PF03915_consen 279 IWESELQKVCEEQQFLKLQ----EDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHH
No 234
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.63 E-value=1.5e+02 Score=24.92 Aligned_cols=32 Identities=38% Similarity=0.313 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
++|..+.++|++++..+.+++..|...+.+.+
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~ 33 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELE 33 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888888888777766665
No 235
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.51 E-value=2.6e+02 Score=23.56 Aligned_cols=35 Identities=34% Similarity=0.407 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 14 QKERDARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 14 KkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
++-++.++..|++...++++++..++.++..+...
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 123 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666665544
No 236
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=23.32 E-value=4.6e+02 Score=24.84 Aligned_cols=101 Identities=18% Similarity=0.346 Sum_probs=60.2
Q ss_pred hhhhHHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhhcchhhhhhhhccCC
Q 047848 228 LVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRDFQI 307 (360)
Q Consensus 228 L~DEraVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er~rd~~~~ryk~~~I 307 (360)
|+.+.+-==.+ ..|+.-.|+|+.++...+.|...+..-..||. .-|+-+.+.++ .|-..=-
T Consensus 25 La~da~~AP~l----~~r~ala~mAaae~~hf~~L~~~l~~~G~d~~-------~am~pf~~~ld--------~f~~rT~ 85 (185)
T PF13794_consen 25 LAEDARMAPTL----ADRIALARMAAAEFGHFERLEARLAERGVDPE-------EAMEPFVGALD--------AFHARTR 85 (185)
T ss_dssp HHHHHCC-SSS----TTHHHHHHHHHHHHHHHHHHHHHHHHTT--HH-------HHHGGGHHHHH--------HHHHTT-
T ss_pred HHHHHhhCcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-------HHHHHHHHHHH--------HHHhcCC
Confidence 44444333344 67888999999999999999999988887742 12333333332 2222234
Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 047848 308 PCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEEL 351 (360)
Q Consensus 308 p~~wmld~gii~kiK~asv~la~~ymkrfaggfd~e~~~afeel 351 (360)
|.+|. .+++ |. .-..-|+..|..+.|.++|+++......+
T Consensus 86 P~dW~--E~Lv-Ka-YVg~gla~DFy~~va~~L~~~~r~~v~~v 125 (185)
T PF13794_consen 86 PSDWL--ESLV-KA-YVGDGLAADFYREVASGLDPETRALVLDV 125 (185)
T ss_dssp -SSHH--HHHH-HH-HHHHHHHHHHHHHHCCCS-HHHHHHHHHH
T ss_pred CCChH--HHHH-HH-HHHHhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 77881 1111 00 12345788889999999999998877655
No 237
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=23.29 E-value=3.8e+02 Score=28.83 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH--------hcCCCCHHHHHHHH
Q 047848 316 GLIGQMKVSSLRLAKEYMKR--------FAGGFDAETIQAFE 349 (360)
Q Consensus 316 gii~kiK~asv~la~~ymkr--------faggfd~e~~~afe 349 (360)
.|..+||..-+.|..+-+.+ +.|-||.+...+|-
T Consensus 172 ~~F~~lk~~l~~l~~~i~~~~~~~~~~~l~~~~~~~~Q~~~~ 213 (494)
T PF02074_consen 172 EIFAELKAFLVPLLQKILEKQKQPDDSFLHGPFPEEKQKAFS 213 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHCHTCCHTGGGGGSB--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccCCCCCCHHHHHHHH
Confidence 35557777777777766654 56677777766664
No 238
>PRK00766 hypothetical protein; Provisional
Probab=23.26 E-value=40 Score=31.80 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=17.5
Q ss_pred hhHHhhhhCCCCCcchhhHHHHhh
Q 047848 230 DERAVLKHFPQWPERKADTLREAA 253 (360)
Q Consensus 230 DEraVLk~F~~wPe~K~dalReAa 253 (360)
=|.|+.+||++|.+ ++..+|.+.
T Consensus 114 ie~AL~k~f~~~~~-R~~~~~~~g 136 (194)
T PRK00766 114 IESALKKHFSDWEE-RIKLIKKAG 136 (194)
T ss_pred HHHHHHHHCCCHHH-HHHHHHhCC
Confidence 37888999999954 677777654
No 239
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.24 E-value=3.4e+02 Score=27.83 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
..|+..+..|+.+|.+|.++..++.+|+..+
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~ 170 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEKF 170 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666555555433
No 240
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.85 E-value=2.7e+02 Score=26.31 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.+...++..++.|++++..+...+.+|+
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555555444
No 241
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.83 E-value=2e+02 Score=22.42 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
+++|..+.+.|..++.+|.+.|..+++.+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555443
No 242
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.79 E-value=2.4e+02 Score=24.29 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQ 61 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq 61 (360)
.++.+...-++.++..|+.+...|+.+..+.|+.+-+-++
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444443333
No 243
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=22.77 E-value=3e+02 Score=26.44 Aligned_cols=79 Identities=22% Similarity=0.210 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccccC
Q 047848 195 FINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQK 274 (360)
Q Consensus 195 ~I~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~p~ 274 (360)
-||+++-.+......+++++..-+.-++..|=. .+..|| +.|+ --.....+.-++.|..|...|...-.
T Consensus 105 eiNE~K~~ly~~~~~~~e~~~~~~~~ies~l~~-----~~~~~f-~~~~-----w~~l~~~~l~~~rL~~E~~~~~~~~~ 173 (212)
T PF07307_consen 105 EINELKMSLYQKKKETAEEYLESVVTIESALFQ-----SFAEHF-GKPE-----WKELIEEFLLLKRLLKERELYQEGGN 173 (212)
T ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHH-----HHHHHH-hHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 378888888877788889988888888887754 334566 4443 34456667778999999999988766
Q ss_pred CcHHHHHHHH
Q 047848 275 ESLPQATRKM 284 (360)
Q Consensus 275 ~p~~~~L~Km 284 (360)
.|+..+++.+
T Consensus 174 s~l~~~~~~~ 183 (212)
T PF07307_consen 174 SPLFEALKHI 183 (212)
T ss_pred cHHHHHHHHH
Confidence 7888888776
No 244
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.54 E-value=3.8e+02 Score=26.65 Aligned_cols=23 Identities=22% Similarity=0.577 Sum_probs=12.0
Q ss_pred hhHHHhhhhhhhHHhhhhCCCCC
Q 047848 220 WLDGELSSLVDERAVLKHFPQWP 242 (360)
Q Consensus 220 wld~eLs~L~DEraVLk~F~~wP 242 (360)
|-..|+..|-++-.-|.++-||=
T Consensus 273 ~t~~Ev~~Lk~~~~~Le~~~gw~ 295 (325)
T PF08317_consen 273 WTRSEVKRLKAKVDALEKLTGWK 295 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHHCcE
Confidence 44555555555555555554553
No 245
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.54 E-value=2.6e+02 Score=25.22 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 047848 8 SRIDSFQKERD 18 (360)
Q Consensus 8 ~eI~~LKkeLd 18 (360)
.++..|+.+|.
T Consensus 27 ~e~~~~k~ql~ 37 (155)
T PF06810_consen 27 EERDNLKTQLK 37 (155)
T ss_pred HHHHHHHHHHH
Confidence 35555555555
No 246
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.33 E-value=3.4e+02 Score=22.23 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=16.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 9 RIDSFQKERD-ARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 9 eI~~LKkeLd-s~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
++..|+..|+ +...=...+.+.+.+++..|+.+...|...
T Consensus 50 eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e 90 (100)
T PF01486_consen 50 ELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE 90 (100)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555 222222222333344444444444444433
No 247
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.29 E-value=4.6e+02 Score=21.76 Aligned_cols=17 Identities=18% Similarity=0.374 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhhhh
Q 047848 32 RQEVLRLKAQISSLKAH 48 (360)
Q Consensus 32 eQel~~LksQI~sL~~q 48 (360)
-++|.++..+|+.|+.-
T Consensus 65 l~~Id~Ie~~V~~LE~~ 81 (99)
T PF10046_consen 65 LQQIDQIEEQVTELEQT 81 (99)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555566666666643
No 248
>PRK11530 hypothetical protein; Provisional
Probab=22.17 E-value=1.1e+02 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh--hhhhhhHH
Q 047848 26 KENFELRQEVLRLKAQISSLKAH--DNERKSML 56 (360)
Q Consensus 26 ~EnkkLeQel~~LksQI~sL~~q--~~erqs~l 56 (360)
.|..++.+++.+|+.|.+.|..| .+|+|+.|
T Consensus 24 ~ev~ql~~~vs~LNqem~~Lt~qa~aleqQn~L 56 (183)
T PRK11530 24 SEVRQMHNSVSTLNQEMTQLTQQAVAIEQQNRL 56 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555556666666666666544 56666554
No 249
>PRK15313 autotransport protein MisL; Provisional
Probab=22.07 E-value=91 Score=36.07 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=4.5
Q ss_pred hHHHHHHHH
Q 047848 181 YLSAIKTDV 189 (360)
Q Consensus 181 ~l~aIk~Dv 189 (360)
|..||=.|+
T Consensus 704 y~lQLGgDl 712 (955)
T PRK15313 704 YVLQLGGDL 712 (955)
T ss_pred EEEEeeeeh
Confidence 445555554
No 250
>PF13864 Enkurin: Calmodulin-binding
Probab=22.06 E-value=2.4e+02 Score=23.20 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 047848 32 RQEVLRLKAQIS 43 (360)
Q Consensus 32 eQel~~LksQI~ 43 (360)
++++++++.-|.
T Consensus 80 E~~L~qlE~dI~ 91 (98)
T PF13864_consen 80 EKELKQLEKDIK 91 (98)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 251
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=21.97 E-value=54 Score=30.39 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|+||.+ |..|...+|-|++|...|.||+ .++.++
T Consensus 19 LE~ELdE-KE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 19 LESELDE-KENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHH-HHHHHHCH---------------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHh
No 252
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.89 E-value=3.1e+02 Score=24.04 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhhhhh
Q 047848 136 VPEVVELYRSLTRKDA 151 (360)
Q Consensus 136 speVVelY~sLkkk~~ 151 (360)
+||+.+.=+.|+.+.+
T Consensus 21 s~E~~a~le~Lr~~~e 36 (142)
T PF11712_consen 21 SPELKARLERLRAEQE 36 (142)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5888887777777765
No 253
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.85 E-value=2.2e+02 Score=28.27 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhh
Q 047848 137 PEVVELYRSLTR 148 (360)
Q Consensus 137 peVVelY~sLkk 148 (360)
-++++.|.+-.+
T Consensus 262 ve~l~iik~a~~ 273 (290)
T COG4026 262 VEELEIIKEAIE 273 (290)
T ss_pred HHHHHHHHHHHH
Confidence 356666665443
No 254
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.82 E-value=2e+02 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 8 SRIDSFQKERDARIALLEKENFELRQEVL 36 (360)
Q Consensus 8 ~eI~~LKkeLds~n~eLe~EnkkLeQel~ 36 (360)
.+|.+|+++|+.++..-++++++|+..|.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 255
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.76 E-value=1.8e+02 Score=27.66 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 17 RDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 17 Lds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
||..|..|+.+.+.|.++..-.+++|..|.+..+--+ +-+.||+|
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~ee--mQe~i~~L 128 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEE--MQEEIQEL 128 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH--HHHHHHHH
Confidence 4455666666666666666666666666665522221 33556655
No 256
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=21.74 E-value=1.3e+02 Score=27.72 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=17.4
Q ss_pred hhHHHHHhhhhhhHHHHHHH
Q 047848 169 RNMIGEIENRSTYLSAIKTD 188 (360)
Q Consensus 169 ~~iLgEIeNRS~~l~aIk~D 188 (360)
+.|=.||.+|++||..||+=
T Consensus 106 SrIPdei~dR~~FL~tIK~I 125 (154)
T PF06840_consen 106 SRIPDEISDRRTFLETIKEI 125 (154)
T ss_dssp HTHHHHTTSHHHHHHHHHHH
T ss_pred hcCcHhhcchHHHHHHHHHH
Confidence 56789999999999998863
No 257
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.71 E-value=8.1e+02 Score=24.59 Aligned_cols=15 Identities=40% Similarity=0.782 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHHH
Q 047848 316 GLIGQMKVSSLRLAK 330 (360)
Q Consensus 316 gii~kiK~asv~la~ 330 (360)
|=+++++.-|.+|.+
T Consensus 235 ~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 235 GRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666555
No 258
>CHL00088 apcB allophycocyanin beta subunit
Probab=21.69 E-value=52 Score=30.06 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=21.5
Q ss_pred hhhhccCCCccccccchhhHHHHHHHHHH
Q 047848 300 KKYRDFQIPCDWMMDSGLIGQMKVSSLRL 328 (360)
Q Consensus 300 ~ryk~~~Ip~~wmld~gii~kiK~asv~l 328 (360)
--|+++|+|..||.. -+..||.+++.+
T Consensus 114 E~y~~Lgvp~~~~i~--al~~mk~~~~~~ 140 (161)
T CHL00088 114 ETYNSLGVPIGATIQ--AIQAMKEVTASL 140 (161)
T ss_pred HHHHHhCCCHHHHHH--HHHHHHHHHHHH
Confidence 359999999999887 566788887655
No 259
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.63 E-value=2.6e+02 Score=26.62 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh--------------hhhhhhHHHHHhhCC
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAH--------------DNERKSMLWKKLQNP 63 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q--------------~~erqs~l~Kkiq~~ 63 (360)
+.++|++.++|..+++.-...|.++++- --++.+..|+|+...
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krm 174 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRM 174 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777666643 223447888888765
No 260
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.53 E-value=3.2e+02 Score=23.48 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 10 IDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 10 I~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
+..-.+-|+.++..|+...+++++++..+..++..+...+.+.
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667788888888888888888888888777665543
No 261
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=21.51 E-value=3.9e+02 Score=22.24 Aligned_cols=32 Identities=31% Similarity=0.264 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
..+...++++|..++..|++.++.++..+.+.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~ 107 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEEY 107 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666665555544
No 262
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.38 E-value=1.1e+02 Score=31.80 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
++..|+.||.+|.+|..+|+.++..|+..
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777543
No 263
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=21.38 E-value=2.9e+02 Score=22.68 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHH
Q 047848 31 LRQEVLRLKAQISSLKAHDNERKSML 56 (360)
Q Consensus 31 LeQel~~LksQI~sL~~q~~erqs~l 56 (360)
|+..+..+.+++.+|+.+..+-|++|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555544444443
No 264
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=21.31 E-value=1.6e+02 Score=27.85 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
..+.+|+.+..+|++++.+++.++..|.
T Consensus 106 ~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 106 QEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777665
No 265
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=21.27 E-value=4.1e+02 Score=25.56 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=48.9
Q ss_pred hhHHHhhhhhhhHHhhhhCCCCCcchhhHH----HHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhh
Q 047848 220 WLDGELSSLVDERAVLKHFPQWPERKADTL----REAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRAC 293 (360)
Q Consensus 220 wld~eLs~L~DEraVLk~F~~wPe~K~dal----ReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er 293 (360)
|.+.+..+|.+--.-|+.. ..+.|.| |+.|..|.++-+=..-+++-.+ .+++.+|.++..+++++..
T Consensus 25 ~Fe~~k~~l~~l~~~Lk~~----~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~---t~L~~~ls~lae~~ek~~~ 95 (219)
T cd07621 25 FFEQEKNFLVEYHNRIKDA----TAKADKMTRKHKDVADSYIKISAALTQLATSEP---TPLDKFLLKVAETFEKLRK 95 (219)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHH
Confidence 7788888888877778887 7777777 7777777777555556666543 3678888888877777663
No 266
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.21 E-value=2.6e+02 Score=30.07 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=21.1
Q ss_pred hhhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 047848 168 TRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKE 202 (360)
Q Consensus 168 ~~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~ 202 (360)
..+++.+|++ ...+|..||..+..-+..|...
T Consensus 460 ~~~~~~~~~~---~w~~~~~~~~~~~~~~~~~~~~ 491 (585)
T PRK14950 460 DGDVLEQLEA---IWKQILRDVPPRSPAVQALLSS 491 (585)
T ss_pred cchhHHHHHH---HHHHHHHHHhhcCHHHHHHHhC
Confidence 3467777773 3556777777777777666554
No 267
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=21.16 E-value=1.3e+02 Score=29.64 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHhhhhhhhhhhhhHHHHHhhCCCCCC
Q 047848 21 IALLEKENFELRQEVLR---LKAQISSLKAHDNERKSMLWKKLQNPNTDT 67 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~---LksQI~sL~~q~~erqs~l~Kkiq~~~~~~ 67 (360)
-.++..+|+.|..++++ +..++.+|+.++ ..++++.++....
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN-----~~Lr~lL~~~~~~ 112 (284)
T COG1792 68 LKDLALENEELKKELAELEQLLEEVESLEEEN-----KRLKELLDFKESS 112 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhCCcccc
Confidence 33444445444443333 444455555444 4455665554443
No 268
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.07 E-value=3e+02 Score=24.25 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFEL----RQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkL----eQel~~LksQI~sL~~q~~e 51 (360)
...+|..++.++.....++++++.++ +++++.++++|..|++.+.+
T Consensus 8 al~ki~~l~~~~~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 8 ALRKIAELQREIARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777776666666665444 34566667777666655433
No 269
>CHL00086 apcA allophycocyanin alpha subunit
Probab=21.01 E-value=54 Score=30.00 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=21.8
Q ss_pred hhhhccCCCccccccchhhHHHHHHHHHH
Q 047848 300 KKYRDFQIPCDWMMDSGLIGQMKVSSLRL 328 (360)
Q Consensus 300 ~ryk~~~Ip~~wmld~gii~kiK~asv~l 328 (360)
--|+.+|+|..||.. -|..||.+++++
T Consensus 114 E~Y~aLgvP~~~~v~--ai~~mk~~~~~~ 140 (161)
T CHL00086 114 EMYNSLGTPISGVAE--GVRSMKSVACSL 140 (161)
T ss_pred HHHHHhCCCHHHHHH--HHHHHHHHHHHH
Confidence 358999999999887 567888888654
No 270
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=20.93 E-value=1.8e+02 Score=23.67 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
.+|..+.++|+.+++.|+.||-.+++.-
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~Y 32 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSY 32 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777653
No 271
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=20.72 E-value=2.1e+02 Score=28.60 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q 047848 30 ELRQEVLRLKAQIS 43 (360)
Q Consensus 30 kLeQel~~LksQI~ 43 (360)
+|.+++..+...+.
T Consensus 129 el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 129 ELDSELELLRQELA 142 (292)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 272
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.66 E-value=3.5e+02 Score=25.30 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
.....|+.+...+...+.+|+.+|..|+..+.+.+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666666666555544443
No 273
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.61 E-value=2.6e+02 Score=21.87 Aligned_cols=33 Identities=33% Similarity=0.386 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.+|+.+|..|+.|+.++++++..-.+.-.+-.+
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAea 56 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAKKSASRAAAEA 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 274
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=20.61 E-value=1.8e+02 Score=27.81 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047848 15 KERDARIALLEKENFELRQEVL 36 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~ 36 (360)
.++..+|.+|++|+.+|+.++.
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777788888877776555
No 275
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.60 E-value=3.1e+02 Score=24.87 Aligned_cols=8 Identities=50% Similarity=0.364 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 047848 21 IALLEKEN 28 (360)
Q Consensus 21 n~eLe~En 28 (360)
..+|+.+.
T Consensus 60 ~~eLr~el 67 (177)
T PF07798_consen 60 IAELRSEL 67 (177)
T ss_pred HHHHHHHH
Confidence 33333333
No 276
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=20.51 E-value=3.7e+02 Score=25.83 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
...++...+.++. .....++.+.+.+++++..+++++...+.
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~ 122 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQARE 122 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445454444 22333444444455555555555544443
No 277
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.50 E-value=2.2e+02 Score=23.21 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
..+|+++.+.|++++..+.+++..++
T Consensus 72 ~~~l~~~l~~l~~~~~~~~~~~~~~~ 97 (104)
T PF13600_consen 72 LKELEEELEALEDELAALQDEIQALE 97 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443
No 278
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.50 E-value=3.2e+02 Score=29.69 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 047848 5 DDDSRIDSFQKERD-----ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWK 58 (360)
Q Consensus 5 d~e~eI~~LKkeLd-----s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~K 58 (360)
+++.+|..+.++|. ..+.+|+++...++.++.+++.++..+..++.+.+....+
T Consensus 402 ~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 402 ELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 279
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=20.45 E-value=4.5e+02 Score=28.77 Aligned_cols=43 Identities=33% Similarity=0.312 Sum_probs=31.8
Q ss_pred chhhHHHHHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHhhhcc
Q 047848 315 SGLIGQMKVSS----LRLAKEYMKRFAGGFDAETIQAFEELKKVGLS 357 (360)
Q Consensus 315 ~gii~kiK~as----v~la~~ymkrfaggfd~e~~~afeelr~~~~~ 357 (360)
+|++-=+|..+ ..|.+.|...+..-|+.|....|+.+|+...+
T Consensus 215 s~Li~~lK~~d~~~y~~L~~~Y~~~~~~ly~~e~~~~~~~~k~~~~k 261 (701)
T PF09763_consen 215 SGLILWLKEVDPESYQALIKAYNSSMSKLYEREIRDFFEALKKSISK 261 (701)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555566554 45677777778888888999999999987764
No 280
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=20.45 E-value=2.9e+02 Score=26.61 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
.+.++|..|+.++++||..|+.=+.+-+.|..|.+
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELK 78 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELK 78 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888888877777755554
Done!