Query 047848
Match_columns 360
No_of_seqs 137 out of 161
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 05:58:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g6u_A Domain swapped dimer; d 87.4 0.86 2.9E-05 32.4 4.5 41 7-47 6-48 (48)
2 2xdj_A Uncharacterized protein 85.5 4.2 0.00014 32.3 8.3 60 4-63 2-67 (83)
3 1nkp_B MAX protein, MYC proto- 84.9 1.4 4.8E-05 34.2 5.2 43 5-47 40-82 (83)
4 3ra3_A P1C; coiled coil domain 80.7 1.1 3.8E-05 28.7 2.5 25 22-46 3-27 (28)
5 1jnm_A Proto-oncogene C-JUN; B 79.7 3.7 0.00013 30.4 5.6 36 15-50 25-60 (62)
6 3na7_A HP0958; flagellar bioge 79.3 20 0.00067 32.9 11.5 29 327-355 158-188 (256)
7 1hjb_A Ccaat/enhancer binding 77.8 3.6 0.00012 33.0 5.3 37 19-55 43-79 (87)
8 2w6a_A ARF GTPase-activating p 76.5 8.3 0.00028 29.3 6.6 46 7-52 12-60 (63)
9 1ci6_A Transcription factor AT 75.7 5.6 0.00019 29.7 5.6 28 19-46 30-57 (63)
10 1t2k_D Cyclic-AMP-dependent tr 73.3 8.3 0.00028 28.3 5.9 28 19-46 29-56 (61)
11 3nmd_A CGMP dependent protein 73.1 8.1 0.00028 30.2 6.0 29 27-55 41-69 (72)
12 2wt7_A Proto-oncogene protein 71.0 9.8 0.00033 28.2 5.9 28 19-46 30-57 (63)
13 3hnw_A Uncharacterized protein 70.4 9.4 0.00032 32.7 6.4 15 34-48 111-125 (138)
14 3mq7_A Bone marrow stromal ant 69.9 11 0.00038 32.1 6.5 35 19-53 71-105 (121)
15 2fxo_A Myosin heavy chain, car 69.3 11 0.00036 31.6 6.4 40 7-46 82-124 (129)
16 3efg_A Protein SLYX homolog; x 68.1 16 0.00055 28.5 6.8 49 3-51 9-60 (78)
17 1t2k_D Cyclic-AMP-dependent tr 67.9 12 0.00043 27.3 5.8 33 20-52 23-55 (61)
18 1gd2_E Transcription factor PA 67.7 8.9 0.00031 29.6 5.2 22 21-42 45-66 (70)
19 3m91_A Proteasome-associated A 67.4 17 0.00059 26.5 6.4 31 18-48 15-45 (51)
20 1gu4_A CAAT/enhancer binding p 67.0 9.6 0.00033 30.0 5.3 31 19-49 43-73 (78)
21 3swy_A Cyclic nucleotide-gated 66.8 14 0.00047 26.6 5.6 38 4-41 1-45 (46)
22 3i00_A HIP-I, huntingtin-inter 66.7 26 0.00089 29.5 8.3 49 5-53 12-60 (120)
23 3ra3_B P2F; coiled coil domain 66.6 6.5 0.00022 25.2 3.4 25 22-46 3-27 (28)
24 1ci6_A Transcription factor AT 65.3 14 0.00047 27.6 5.7 38 19-56 23-60 (63)
25 3hnw_A Uncharacterized protein 64.8 19 0.00067 30.7 7.3 28 21-48 105-132 (138)
26 3m91_A Proteasome-associated A 64.2 12 0.00042 27.3 5.0 40 7-46 8-50 (51)
27 3a7o_A Autophagy protein 16; c 63.7 34 0.0012 26.8 7.7 52 8-63 18-72 (75)
28 3m48_A General control protein 63.2 11 0.00039 25.4 4.3 27 16-42 4-30 (33)
29 1nlw_A MAD protein, MAX dimeri 62.8 16 0.00056 28.4 5.9 38 7-44 42-79 (80)
30 3vmx_A Voltage-gated hydrogen 62.6 26 0.00088 25.5 6.4 38 6-43 2-42 (48)
31 1gmj_A ATPase inhibitor; coile 62.2 18 0.00062 29.0 6.1 35 10-44 42-76 (84)
32 3qh9_A Liprin-beta-2; coiled-c 57.9 47 0.0016 26.5 7.7 50 11-61 22-74 (81)
33 2yy0_A C-MYC-binding protein; 57.4 15 0.00051 26.8 4.5 27 21-47 21-47 (53)
34 1nkp_A C-MYC, MYC proto-oncoge 57.4 18 0.00063 28.5 5.4 40 7-46 47-86 (88)
35 4emc_A Monopolin complex subun 57.1 22 0.00076 32.4 6.5 50 13-62 11-70 (190)
36 2k48_A Nucleoprotein; viral pr 56.9 33 0.0011 28.6 7.0 49 5-53 39-102 (107)
37 3nmd_A CGMP dependent protein 56.4 31 0.0011 26.9 6.3 29 19-47 40-68 (72)
38 2v71_A Nuclear distribution pr 55.3 27 0.00093 31.6 6.8 44 19-62 56-99 (189)
39 2yy0_A C-MYC-binding protein; 54.7 20 0.00068 26.1 4.8 25 19-43 26-50 (53)
40 2wt7_A Proto-oncogene protein 54.1 23 0.00079 26.2 5.2 37 19-55 23-59 (63)
41 2pnv_A Small conductance calci 54.0 27 0.00093 24.7 5.2 34 12-45 9-42 (43)
42 2lwd_A Probable ATP-dependent 53.2 9.2 0.00032 31.2 3.1 74 181-259 3-95 (100)
43 4emc_A Monopolin complex subun 53.1 12 0.00043 34.0 4.2 57 7-63 19-84 (190)
44 1uo4_A General control protein 52.3 24 0.00083 23.9 4.5 27 16-42 5-31 (34)
45 3m9b_A Proteasome-associated A 50.9 11 0.00038 35.6 3.6 38 10-47 56-96 (251)
46 1hjb_A Ccaat/enhancer binding 50.7 36 0.0012 27.2 6.1 34 20-53 37-70 (87)
47 3m9b_A Proteasome-associated A 49.5 19 0.00065 34.1 5.0 38 16-53 58-95 (251)
48 1p9i_A Cortexillin I/GCN4 hybr 49.5 23 0.00078 23.1 3.8 27 16-42 3-29 (31)
49 2ic6_A Nucleocapsid protein; h 49.1 59 0.002 25.7 7.0 49 5-53 9-72 (78)
50 2dgc_A Protein (GCN4); basic d 48.7 23 0.00078 26.5 4.4 32 20-51 31-62 (63)
51 4fi5_A Nucleoprotein; structur 48.7 40 0.0014 28.4 6.3 49 5-53 26-89 (113)
52 3pdy_A Plectin; cytoskeleton, 48.0 1.3E+02 0.0044 26.1 10.0 32 213-245 106-137 (210)
53 2jee_A YIIU; FTSZ, septum, coi 47.8 44 0.0015 26.6 6.1 22 20-41 28-49 (81)
54 1lwu_C Fibrinogen gamma chain; 47.7 33 0.0011 33.3 6.5 14 169-182 152-165 (323)
55 2zqm_A Prefoldin beta subunit 47.3 37 0.0013 26.8 5.8 31 14-44 79-109 (117)
56 1fxk_A Prefoldin; archaeal pro 47.0 37 0.0013 26.5 5.7 30 14-43 74-103 (107)
57 3c3g_A Alpha/beta peptide with 46.8 34 0.0012 23.1 4.5 27 16-42 4-30 (33)
58 1jnm_A Proto-oncogene C-JUN; B 46.7 23 0.0008 26.0 4.2 35 19-53 22-56 (62)
59 2oxj_A Hybrid alpha/beta pepti 46.1 32 0.0011 23.3 4.3 27 16-42 5-31 (34)
60 1nkp_B MAX protein, MYC proto- 46.1 20 0.00068 27.5 3.9 32 20-51 48-79 (83)
61 2ic9_A Nucleocapsid protein; h 45.9 65 0.0022 26.4 7.0 49 5-53 9-72 (96)
62 2dfs_A Myosin-5A; myosin-V, in 45.5 31 0.0011 38.4 6.6 17 24-40 1028-1044(1080)
63 2v66_B Nuclear distribution pr 44.0 68 0.0023 26.8 7.0 41 7-47 16-63 (111)
64 1gk4_A Vimentin; intermediate 43.3 1E+02 0.0035 23.8 7.7 11 33-43 33-43 (84)
65 1kd8_B GABH BLL, GCN4 acid bas 43.2 51 0.0017 22.6 5.0 28 16-43 5-32 (36)
66 2wq1_A General control protein 43.2 42 0.0014 22.7 4.5 25 16-40 4-28 (33)
67 2dgc_A Protein (GCN4); basic d 43.0 25 0.00086 26.2 3.9 27 16-42 34-60 (63)
68 1kd8_A GABH AIV, GCN4 acid bas 42.4 56 0.0019 22.4 5.1 28 16-43 5-32 (36)
69 3bas_A Myosin heavy chain, str 41.7 82 0.0028 24.7 6.9 37 7-43 20-59 (89)
70 3cve_A Homer protein homolog 1 41.0 55 0.0019 25.4 5.6 29 18-46 13-41 (72)
71 3s9g_A Protein hexim1; cyclin 41.0 84 0.0029 26.0 6.9 55 5-59 34-93 (104)
72 3ol1_A Vimentin; structural ge 40.8 59 0.002 26.8 6.2 12 37-48 87-98 (119)
73 1dh3_A Transcription factor CR 40.8 31 0.0011 25.1 4.0 27 21-47 24-50 (55)
74 2v66_B Nuclear distribution pr 40.5 40 0.0014 28.2 5.1 28 21-48 5-32 (111)
75 1fxk_C Protein (prefoldin); ar 40.2 71 0.0024 26.0 6.6 41 13-53 89-129 (133)
76 1gd2_E Transcription factor PA 40.1 43 0.0015 25.7 4.8 31 18-48 35-65 (70)
77 2oqq_A Transcription factor HY 39.9 47 0.0016 23.5 4.5 24 23-46 7-30 (42)
78 2ve7_A Kinetochore protein HEC 39.4 67 0.0023 30.6 7.2 34 19-52 185-218 (315)
79 1gu4_A CAAT/enhancer binding p 39.3 39 0.0013 26.4 4.6 34 20-53 37-70 (78)
80 3cvf_A Homer-3, homer protein 39.1 35 0.0012 27.0 4.3 28 19-46 20-47 (79)
81 2wt7_B Transcription factor MA 38.6 72 0.0025 25.7 6.1 25 21-45 50-74 (90)
82 3c3f_A Alpha/beta peptide with 38.6 50 0.0017 22.4 4.3 27 16-42 5-31 (34)
83 2ocy_A RAB guanine nucleotide 38.2 65 0.0022 28.3 6.3 51 6-56 84-145 (154)
84 3okq_A BUD site selection prot 36.9 1.4E+02 0.0046 26.0 8.0 28 33-61 61-88 (141)
85 2zqm_A Prefoldin beta subunit 36.5 90 0.0031 24.5 6.5 38 12-49 70-107 (117)
86 1fmh_A General control protein 36.1 55 0.0019 21.6 4.1 25 16-40 5-29 (33)
87 3viq_B Mating-type switching p 35.7 36 0.0012 27.3 3.9 28 16-43 5-32 (85)
88 2bni_A General control protein 35.6 63 0.0022 21.9 4.5 26 16-41 5-30 (34)
89 3tnu_B Keratin, type II cytosk 34.5 1.6E+02 0.0056 24.2 8.0 15 34-48 76-90 (129)
90 2wuj_A Septum site-determining 34.4 47 0.0016 24.2 4.1 33 9-41 24-56 (57)
91 1d7m_A Cortexillin I; coiled-c 34.1 89 0.003 25.6 6.0 35 9-43 22-56 (101)
92 2hy6_A General control protein 34.0 70 0.0024 21.7 4.5 25 16-40 5-29 (34)
93 4etp_A Kinesin-like protein KA 34.0 60 0.002 32.0 6.0 28 21-48 12-39 (403)
94 1j1d_B Troponin T, TNT; THIN f 33.8 95 0.0032 25.6 6.3 47 6-52 43-89 (106)
95 3qh9_A Liprin-beta-2; coiled-c 33.8 76 0.0026 25.3 5.4 39 5-43 37-78 (81)
96 1t3j_A Mitofusin 1; coiled coi 33.8 1.3E+02 0.0043 24.6 6.9 28 13-40 41-68 (96)
97 1deb_A APC protein, adenomatou 33.3 1.4E+02 0.0048 22.0 6.3 41 20-61 11-51 (54)
98 3ghg_A Fibrinogen alpha chain; 33.2 60 0.0021 33.8 6.0 38 5-42 114-154 (562)
99 4evy_A Aminoglycoside N(6')-ac 33.0 15 0.00052 28.9 1.3 12 133-144 29-40 (166)
100 3swf_A CGMP-gated cation chann 32.9 1.3E+02 0.0044 23.6 6.5 40 5-44 4-50 (74)
101 3tnu_A Keratin, type I cytoske 32.8 1.8E+02 0.0061 24.0 8.0 15 34-48 78-92 (131)
102 3u06_A Protein claret segregat 32.3 56 0.0019 32.4 5.6 48 12-63 7-57 (412)
103 2zdi_C Prefoldin subunit alpha 32.2 1.1E+02 0.0036 25.8 6.6 42 12-53 98-139 (151)
104 3trt_A Vimentin; cytoskeleton, 31.9 1.2E+02 0.0042 22.5 6.2 25 22-46 38-62 (77)
105 3htk_A Structural maintenance 31.7 1.4E+02 0.0047 21.2 6.4 19 27-45 34-52 (60)
106 3mov_A Lamin-B1; LMNB1, B-type 30.9 44 0.0015 26.9 3.7 29 10-38 28-56 (95)
107 2q6q_A Spindle POLE BODY compo 30.8 1.1E+02 0.0036 23.9 5.6 30 23-52 7-36 (74)
108 2h6f_A Protein farnesyltransfe 30.8 10 0.00036 36.1 0.0 8 327-334 314-321 (382)
109 4b4t_K 26S protease regulatory 30.6 72 0.0025 31.7 6.0 41 5-45 46-89 (428)
110 1fxk_A Prefoldin; archaeal pro 30.5 1.1E+02 0.0039 23.6 6.1 36 12-47 65-100 (107)
111 1jcd_A Major outer membrane li 30.3 77 0.0027 23.1 4.6 26 22-47 7-32 (52)
112 1dh3_A Transcription factor CR 30.3 63 0.0021 23.4 4.1 28 15-42 25-52 (55)
113 1zxa_A CGMP-dependent protein 30.3 65 0.0022 24.7 4.4 29 18-46 24-52 (67)
114 1go4_E MAD1 (mitotic arrest de 30.2 63 0.0022 26.5 4.6 26 19-44 19-44 (100)
115 4h22_A Leucine-rich repeat fli 30.2 1.6E+02 0.0056 24.3 7.1 44 9-52 31-84 (103)
116 3s4r_A Vimentin; alpha-helix, 30.2 94 0.0032 24.7 5.6 10 34-43 57-66 (93)
117 2oqq_A Transcription factor HY 30.0 67 0.0023 22.7 4.0 16 19-34 24-39 (42)
118 1x8y_A Lamin A/C; structural p 29.9 64 0.0022 25.2 4.5 33 8-40 17-49 (86)
119 4fz4_A 0197-18KD, uncharacteri 29.6 77 0.0026 28.0 5.3 44 312-356 73-146 (154)
120 1lwu_B Fibrinogen beta chain; 29.4 49 0.0017 32.0 4.4 38 6-43 11-52 (323)
121 1f1m_A OSPC, outer surface pro 29.1 33 0.0011 30.6 2.9 34 171-205 8-41 (164)
122 1zme_C Proline utilization tra 29.1 46 0.0016 23.8 3.3 23 21-43 46-68 (70)
123 1yjg_A Surface protein VSPA; h 28.9 33 0.0011 30.3 2.9 31 174-205 3-33 (158)
124 2wg5_A General control protein 28.7 41 0.0014 27.4 3.2 29 20-48 8-36 (109)
125 3ez0_A Uncharacterized protein 28.7 2E+02 0.0068 26.7 8.2 101 228-351 34-134 (225)
126 1am9_A Srebp-1A, protein (ster 28.7 85 0.0029 24.1 4.9 24 21-44 52-75 (82)
127 2fxo_A Myosin heavy chain, car 28.7 1.2E+02 0.0042 25.0 6.3 38 8-45 20-60 (129)
128 1lwu_C Fibrinogen gamma chain; 28.4 1.2E+02 0.0042 29.3 7.0 26 24-49 24-49 (323)
129 3u06_A Protein claret segregat 28.4 84 0.0029 31.1 6.0 51 16-67 7-57 (412)
130 3u1c_A Tropomyosin alpha-1 cha 28.3 2.3E+02 0.0078 22.6 7.7 9 10-18 11-19 (101)
131 2ga0_A Surface protein VSPA; h 28.2 41 0.0014 30.3 3.4 35 170-205 10-44 (181)
132 1ic2_A Tropomyosin alpha chain 28.1 2E+02 0.0068 21.9 7.0 19 30-48 38-56 (81)
133 2v71_A Nuclear distribution pr 27.7 1.1E+02 0.0039 27.5 6.3 45 8-52 24-75 (189)
134 2wuj_A Septum site-determining 27.5 43 0.0015 24.4 2.8 28 210-237 21-48 (57)
135 3a2a_A Voltage-gated hydrogen 27.4 1.4E+02 0.0049 22.2 5.6 37 7-43 10-49 (58)
136 1ik9_A DNA repair protein XRCC 26.9 1.9E+02 0.0066 26.2 7.7 30 17-46 137-166 (213)
137 1nlw_A MAD protein, MAX dimeri 26.8 69 0.0023 24.8 4.1 31 19-49 47-77 (80)
138 1j1d_C Troponin I, TNI; THIN f 26.1 1.8E+02 0.0063 24.8 7.0 48 6-53 59-106 (133)
139 1fzc_C Fibrin; blood coagulati 25.7 33 0.0011 33.2 2.5 14 169-182 143-158 (319)
140 2a26_A Calcyclin-binding prote 25.6 1.3E+02 0.0045 21.6 5.1 37 2-38 5-46 (50)
141 1t3j_A Mitofusin 1; coiled coi 25.6 1.3E+02 0.0043 24.6 5.5 43 6-48 41-86 (96)
142 3na7_A HP0958; flagellar bioge 25.3 1.9E+02 0.0066 26.2 7.5 14 137-150 175-188 (256)
143 3ehr_A Osteoclast-stimulating 25.3 15 0.00053 30.8 0.1 9 193-201 86-94 (222)
144 2zvf_A Alanyl-tRNA synthetase; 25.1 95 0.0032 26.0 5.0 26 19-44 32-57 (171)
145 2wq1_A General control protein 25.1 72 0.0024 21.5 3.3 27 22-48 3-29 (33)
146 1nkp_A C-MYC, MYC proto-oncoge 25.0 82 0.0028 24.7 4.3 31 21-51 54-84 (88)
147 1deq_A Fibrinogen (alpha chain 24.9 4.6E+02 0.016 26.2 10.4 91 169-266 66-157 (390)
148 1ytz_T Troponin T; muscle, THI 24.8 87 0.003 25.8 4.5 47 6-52 43-89 (107)
149 1am9_A Srebp-1A, protein (ster 24.4 81 0.0028 24.3 4.1 29 8-36 46-74 (82)
150 1wt6_A Myotonin-protein kinase 24.4 2.1E+02 0.0071 22.8 6.4 42 6-47 29-73 (81)
151 2j76_E EIF-4B, EIF4B, eukaryot 24.1 14 0.00048 28.1 -0.3 8 137-144 34-41 (100)
152 3viq_B Mating-type switching p 24.1 84 0.0029 25.2 4.2 27 22-48 4-30 (85)
153 4abx_A DNA repair protein RECN 23.8 1.1E+02 0.0039 26.2 5.4 41 188-232 126-166 (175)
154 3he4_A Synzip6; heterodimeric 23.8 1.4E+02 0.0049 21.6 4.9 31 17-47 22-52 (56)
155 3gp4_A Transcriptional regulat 23.6 2.4E+02 0.0083 23.4 7.3 34 19-52 88-121 (142)
156 3o0z_A RHO-associated protein 23.6 2.5E+02 0.0086 24.9 7.6 54 5-58 66-132 (168)
157 1g5z_A Outer surface protein C 23.5 58 0.002 29.0 3.4 33 171-204 6-39 (164)
158 1d7m_A Cortexillin I; coiled-c 23.4 2.7E+02 0.0091 22.8 7.0 56 7-62 3-61 (101)
159 3a7p_A Autophagy protein 16; c 23.3 2.7E+02 0.0092 24.4 7.6 10 9-18 69-78 (152)
160 3r1f_A ESX-1 secretion-associa 23.2 3.1E+02 0.011 22.5 8.6 46 304-351 70-123 (135)
161 1ytz_I Troponin I; muscle, THI 23.1 2.2E+02 0.0077 25.6 7.2 48 6-53 56-103 (182)
162 1zme_C Proline utilization tra 23.1 64 0.0022 23.0 3.1 23 28-50 46-68 (70)
163 2v4h_A NF-kappa-B essential mo 23.0 1.9E+02 0.0065 24.2 6.2 42 7-48 23-70 (110)
164 3oja_B Anopheles plasmodium-re 22.6 2.5E+02 0.0085 27.7 8.2 14 19-32 516-529 (597)
165 2lf0_A Uncharacterized protein 22.6 2.8E+02 0.0094 23.6 7.2 59 5-63 7-73 (123)
166 3onj_A T-snare VTI1; helix, HA 21.6 1.4E+02 0.0048 23.6 5.1 56 177-232 31-96 (97)
167 1a93_B MAX protein, coiled coi 21.5 1.4E+02 0.0048 20.2 4.2 18 19-36 14-31 (34)
168 2pmy_A RAS and EF-hand domain- 21.3 23 0.0008 26.1 0.4 6 139-144 29-34 (91)
169 2z5i_A TM, general control pro 21.3 2.2E+02 0.0076 20.4 5.6 27 6-32 10-36 (52)
170 3u59_A Tropomyosin beta chain; 21.1 3.1E+02 0.011 21.6 7.7 9 10-18 11-19 (101)
171 1wlq_A Geminin; coiled-coil; 2 21.1 3E+02 0.01 21.9 6.8 27 20-46 39-65 (83)
172 2pnv_A Small conductance calci 21.0 1.1E+02 0.0039 21.4 3.9 25 22-46 12-36 (43)
173 2e7s_A RAB guanine nucleotide 20.9 69 0.0024 27.6 3.3 12 7-18 45-56 (135)
174 3ol1_A Vimentin; structural ge 20.9 71 0.0024 26.3 3.3 34 5-38 66-102 (119)
175 3hd7_B Syntaxin-1A; membrane p 20.5 1.4E+02 0.0047 24.1 4.9 38 167-204 8-45 (109)
176 2h6f_A Protein farnesyltransfe 20.4 21 0.00073 33.9 0.0 22 327-348 335-356 (382)
177 3cve_A Homer protein homolog 1 20.3 2.8E+02 0.0095 21.4 6.3 26 19-44 7-32 (72)
178 3okq_A BUD site selection prot 20.1 3E+02 0.01 23.9 7.1 41 197-238 57-105 (141)
179 2efr_A General control protein 20.0 3.3E+02 0.011 23.7 7.5 12 7-18 76-87 (155)
No 1
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=87.36 E-value=0.86 Score=32.41 Aligned_cols=41 Identities=29% Similarity=0.420 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 7 DSRIDSFQKERD--ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 7 e~eI~~LKkeLd--s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.+++..||++=. .+..-|+.+.+-|+..++.|+++++.|++
T Consensus 6 kselqalkkegfspeelaaleselqalekklaalksklqalkg 48 (48)
T 1g6u_A 6 KSELQALKKEGFSPEELAALESELQALEKKLAALKSKLQALKG 48 (48)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666665544 66788999999999999999999998763
No 2
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=85.53 E-value=4.2 Score=32.32 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=48.9
Q ss_pred CchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHhhCC
Q 047848 4 EDDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLK---AHDNERKSMLWKKLQNP 63 (360)
Q Consensus 4 gd~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~---~q~~erqs~l~Kkiq~~ 63 (360)
|+.+..+..|+..++ ...-+|..++..|++++.+|..+|..+. .+..++|.-+..+|.+.
T Consensus 2 ~s~e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~R 67 (83)
T 2xdj_A 2 GSVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSL 67 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887776 3467899999999999999999999887 44788888899888765
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.95 E-value=1.4 Score=34.18 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
+++..-..+-+.|...++.|+.++..|.++...|+.++.+|++
T Consensus 40 ~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~~ 82 (83)
T 1nkp_B 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444555556666677777888888888888888888877764
No 4
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=80.74 E-value=1.1 Score=28.74 Aligned_cols=25 Identities=48% Similarity=0.511 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+.|+=+|.-|+|.++.|+.+|.+|+
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 4577889999999999999999886
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.72 E-value=3.7 Score=30.36 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQISSLKAHDN 50 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~ 50 (360)
.+|+....+|+.+|..|..++..|..++..|..+..
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777776665543
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.33 E-value=20 Score=32.89 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=23.3
Q ss_pred HHHHHHHHH--hcCCCCHHHHHHHHHHHhhh
Q 047848 327 RLAKEYMKR--FAGGFDAETIQAFEELKKVG 355 (360)
Q Consensus 327 ~la~~ymkr--faggfd~e~~~afeelr~~~ 355 (360)
.++...-+| +++++|++.+..|+.||+..
T Consensus 158 e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~ 188 (256)
T 3na7_A 158 TQQIIFKKKEDLVEKTEPKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Confidence 345555566 99999999999999999853
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.78 E-value=3.6 Score=33.04 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSM 55 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~ 55 (360)
.+..+|+.+|..|..+|.+|+.++..|.....+....
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 5677777788888887888877777777665554433
No 8
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=76.51 E-value=8.3 Score=29.33 Aligned_cols=46 Identities=24% Similarity=0.257 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
..+..++|+.|- .++++|-.=|..|.+|+..+..+|+.|.+.++..
T Consensus 12 ~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 12 LQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 357788888887 7799999999999999999999999998776543
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.71 E-value=5.6 Score=29.71 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
...++|+.+|..|..++..|+.++..|.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 10
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=73.34 E-value=8.3 Score=28.31 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.....|+.+|..|..++..|..++..|.
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.14 E-value=8.1 Score=30.24 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 047848 27 ENFELRQEVLRLKAQISSLKAHDNERKSM 55 (360)
Q Consensus 27 EnkkLeQel~~LksQI~sL~~q~~erqs~ 55 (360)
.+..|+.++.+..+.|..|..+....||+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444444444444444444444443
No 12
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.99 E-value=9.8 Score=28.24 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.....|+.+|..|..++..|..++..|.
T Consensus 30 ~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 30 AETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.36 E-value=9.4 Score=32.73 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhhhhh
Q 047848 34 EVLRLKAQISSLKAH 48 (360)
Q Consensus 34 el~~LksQI~sL~~q 48 (360)
++.+|+.++..|+.+
T Consensus 111 e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 111 EIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 14
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.87 E-value=11 Score=32.09 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
.+.++|+.|++.|.|++..+.+++..|+.++...+
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~ 105 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLS 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 45888999999999999999999998888776554
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.29 E-value=11 Score=31.61 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+..|..+...|+ ..+.+|..+.+++++++..|+.+|..++
T Consensus 82 e~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 82 EAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 4466666666666666666666666554
No 16
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=68.06 E-value=16 Score=28.51 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=30.0
Q ss_pred CCchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 3 PEDDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 3 ~gd~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
..+.+..|..|+-++- ..+++|.....+-.++|..|..++..|.....+
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777666665 556666666666666777777777655544333
No 17
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=67.93 E-value=12 Score=27.33 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
.+++|+.+...|+.+-..|.++|..|..++...
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555554443
No 18
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=67.73 E-value=8.9 Score=29.57 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047848 21 IALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI 42 (360)
++.|..+|..|.+++..|.+++
T Consensus 45 ~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 45 HSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 19
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.44 E-value=17 Score=26.48 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 18 DARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 18 ds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
...+..|-.+|.+|...+.++..||..|+.+
T Consensus 15 ~~~l~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 15 EARIDSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443
No 20
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=67.04 E-value=9.6 Score=29.95 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
.+..+|+.+|..|..+|..|+.++..|....
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888887776543
No 21
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=66.76 E-value=14 Score=26.56 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=23.1
Q ss_pred CchhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 047848 4 EDDDSRIDSFQKERD-------ARIALLEKENFELRQEVLRLKAQ 41 (360)
Q Consensus 4 gd~e~eI~~LKkeLd-------s~n~eLe~EnkkLeQel~~LksQ 41 (360)
||.|..+..|+..|| ....++.+--.+|.|-+..|+.+
T Consensus 1 ~dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 1 GALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567777777776666 33555555555555655555544
No 22
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=66.67 E-value=26 Score=29.48 Aligned_cols=49 Identities=31% Similarity=0.375 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
+-+..|..|+.+++....+++.=...-+..+.+|+.+|..|++...+.+
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888888877666666666666778888888888888866664
No 23
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.60 E-value=6.5 Score=25.18 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.-|..+|.+|.|+++.|+-+|..|+
T Consensus 3 rrlkqknarlkqeiaaleyeiaale 27 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAALE 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 3477889999999999999998775
No 24
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.34 E-value=14 Score=27.58 Aligned_cols=38 Identities=26% Similarity=0.191 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSML 56 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l 56 (360)
.+.++|+.+.+.|+++-.+|+++|..|+.++....+.+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777778888888888888888887777766655443
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.79 E-value=19 Score=30.74 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+++++.++.+|..++..|+-++..|++.
T Consensus 105 ~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 105 AESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444445555555555544433
No 26
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=64.23 E-value=12 Score=27.28 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+..+-.|+.++. .+|..|.+-+++-+++|..|+++|-.|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556667788887 7799999999999999999999998774
No 27
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=63.65 E-value=34 Score=26.81 Aligned_cols=52 Identities=21% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 8 SRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 8 ~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
..|..|+++|. .+|..|++..+--.+.+.+|+.+|.++.-.+ +.|-.+++++
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIEN----NlL~~rl~~l 72 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIEN----NVLQQKLSDL 72 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHH----HHHHHHHHHH
Confidence 45668888888 6688888888888889999999999886433 3444555554
No 28
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=63.18 E-value=11 Score=25.38 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|+...++|..+|..|++++.+|++=+
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 466677788888888888888887644
No 29
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=62.83 E-value=16 Score=28.38 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 7 DSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 7 e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~s 44 (360)
+..-..+-+.|+..+.+|+.++.+|..+...|+.++.+
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333444444455555555555555555555555543
No 30
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=62.55 E-value=26 Score=25.50 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
.+.+|-+||.-++ .++++|+..+.+++|++.+|+.=+.
T Consensus 2 aeq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 2 SERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3567888888887 6799999999999999999887554
No 31
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=62.24 E-value=18 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 10 IDSFQKERDARIALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 10 I~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~s 44 (360)
|.+|++.+...+..-++++++|+.+|.+.+..|..
T Consensus 42 L~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 42 LAALKKHKENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333344444444444444444433
No 32
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.86 E-value=47 Score=26.50 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=37.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhh
Q 047848 11 DSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQ 61 (360)
Q Consensus 11 ~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq 61 (360)
+.|-+++. .+..++++|.-+++..++..+++|++|+.+..+.- --++-+|
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd-~ei~rL~ 74 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKD-AEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhH-HHHHHHH
Confidence 34444444 77899999999999999999999999998865553 2444443
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.44 E-value=15 Score=26.80 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.+.|+.||..|++++..|+.++..|++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555545544444444443
No 34
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=57.42 E-value=18 Score=28.49 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 7 DSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 7 e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+..-..+-+.|+..+..++.+...|.++-..|+.+|..|+
T Consensus 47 L~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444445555555555555666666666666666554
No 35
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=57.06 E-value=22 Score=32.38 Aligned_cols=50 Identities=34% Similarity=0.402 Sum_probs=23.2
Q ss_pred HHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhhHHHHHhhC
Q 047848 13 FQKERD---ARIALLEKENFELR-------QEVLRLKAQISSLKAHDNERKSMLWKKLQN 62 (360)
Q Consensus 13 LKkeLd---s~n~eLe~EnkkLe-------Qel~~LksQI~sL~~q~~erqs~l~Kkiq~ 62 (360)
++++|+ .+++.|+.||..|. +++..|+.|+.+++.+....++-+-|..++
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~ 70 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAEN 70 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Confidence 344444 44555666555554 455666666666665544444334343333
No 36
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=56.88 E-value=33 Score=28.61 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhhhhhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELR---------------QEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLe---------------Qel~~LksQI~sL~~q~~erq 53 (360)
+++.+|...+.+|-.-.+.|++..+.++ .++..++++|..|+.|..++.
T Consensus 39 eLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 39 ELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777766777777655554 367777888887777766554
No 37
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.36 E-value=31 Score=26.94 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.++.+|+.++..++.++..|++++-.+++
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56777777777777777777777766554
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=55.25 E-value=27 Score=31.63 Aligned_cols=44 Identities=27% Similarity=0.276 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhC
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQN 62 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~ 62 (360)
.++.+|+.++.+|..++..++.++.+...+....++.|-+.|..
T Consensus 56 k~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~ 99 (189)
T 2v71_A 56 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQ 99 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665555544445555555543
No 39
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.67 E-value=20 Score=26.13 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
..+.+|+.++..|.+++.+|++++.
T Consensus 26 ~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 26 LELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777777765
No 40
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.13 E-value=23 Score=26.18 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSM 55 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~ 55 (360)
..+.+|+.+...|+.+-..|+++|..|..+......+
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777776665555443
No 41
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=54.03 E-value=27 Score=24.66 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 12 SFQKERDARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 12 ~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
.+-.++.++.++|++....|+..+..|.+++++|
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~aL 42 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHAL 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445666778888888888888888887777765
No 42
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=53.17 E-value=9.2 Score=31.15 Aligned_cols=74 Identities=16% Similarity=0.270 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHhhhhcccChHHHHHHHH-hh-HHHhhh----------------hhhhHHhhh-hCCCC
Q 047848 181 YLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVK-WL-DGELSS----------------LVDERAVLK-HFPQW 241 (360)
Q Consensus 181 ~l~aIk~Dve~~~~~I~~L~~~i~~~~~~d~~~v~~Fv~-wl-d~eLs~----------------L~DEraVLk-~F~~w 241 (360)
+|+.|+.+ +.|..++.-+.-.|.. .-+..+|+.|.. || +++-+. |.| .+++ +=|||
T Consensus 3 ~~~~~e~~-ee~r~lL~~~~p~l~~--~I~p~~IL~~L~~~L~~~d~E~I~a~~~~~G~~~aa~~LL~--~L~r~~~~gW 77 (100)
T 2lwd_A 3 HMKKIEKL-EEYRLLLKRLQPEFKT--RIIPTDIISDLSECLINQECEEILQICSTKGMMAGAEKLVE--CLLRSDKENW 77 (100)
T ss_dssp --CCHHHH-HHHHHHHHHTHHHHHH--HCCTTTTHHHHTTTSCHHHHHHHHHHHHHTCHHHHHHHHHH--HHHHCCCTHH
T ss_pred cHHHHHhh-HHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHCCHHHHHHHHHHHHccChHHHHHHHHH--HHHhcCcCCc
Confidence 34445443 5566667666666654 456666666663 66 222222 222 1333 23699
Q ss_pred CcchhhHHHHhhhhhhhh
Q 047848 242 PERKADTLREAACNYRDL 259 (360)
Q Consensus 242 Pe~K~dalReAa~~y~~L 259 (360)
++.+++|||.....|+.|
T Consensus 78 f~~fl~AL~~~g~~~s~l 95 (100)
T 2lwd_A 78 PKTLKLALEKERNKFSEL 95 (100)
T ss_dssp HHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHcCCchHHH
Confidence 999999999988766654
No 43
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.07 E-value=12 Score=34.02 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhh------hhhhhhHHHHHhhCC
Q 047848 7 DSRIDSFQKERDARIA---LLEKENFELRQEVLRLKAQISSLKAH------DNERKSMLWKKLQNP 63 (360)
Q Consensus 7 e~eI~~LKkeLds~n~---eLe~EnkkLeQel~~LksQI~sL~~q------~~erqs~l~Kkiq~~ 63 (360)
+..|.+|..++..+++ ....+++.|..++..+++++.....+ +++-.--|+..|--+
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNV 84 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCc
Confidence 3445555555553333 33345556666666676666544422 455545566666555
No 44
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=52.27 E-value=24 Score=23.93 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|+...++|..+|..|++++.+|++=+
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455666777788888888888887643
No 45
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=50.94 E-value=11 Score=35.64 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 10 IDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 10 I~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
+..|+.+++ .+|..|..+++.+++++.+|+++|..|..
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444444444 33444555555555555555555555553
No 46
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=50.66 E-value=36 Score=27.22 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
++.+++.+...|+++-..|+.+|..|+.++....
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666655554
No 47
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=49.51 E-value=19 Score=34.06 Aligned_cols=38 Identities=21% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
+|...+..|..+|.+|.+++.+++.+|..|+.++-..+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455677777777777788888888887776654443
No 48
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=49.47 E-value=23 Score=23.14 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|......|+.+|++|...+.+|-+++
T Consensus 3 qlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667788888888888777777665
No 49
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=49.15 E-value=59 Score=25.71 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=32.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhhhhhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELR---------------QEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLe---------------Qel~~LksQI~sL~~q~~erq 53 (360)
+++.+|...+.+|-.-.+.|++..+.++ ..+..++++|..|+.+..++.
T Consensus 9 eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 9 EVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677666777777655554 366777778877777765553
No 50
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=48.72 E-value=23 Score=26.47 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
.+.+|+.+...|+.+-..|.++|..|..+..+
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36666666666666666666677666655443
No 51
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=48.70 E-value=40 Score=28.42 Aligned_cols=49 Identities=12% Similarity=0.145 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhhhhhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELR---------------QEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLe---------------Qel~~LksQI~sL~~q~~erq 53 (360)
+++.+|...+.+|-.-.+.|++..+.++ ..+..|+++|..|+.++.++.
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888877777777766654 356667777777776655554
No 52
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=48.04 E-value=1.3e+02 Score=26.06 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=23.7
Q ss_pred HHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcch
Q 047848 213 EVEAFVKWLDGELSSLVDERAVLKHFPQWPERK 245 (360)
Q Consensus 213 ~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K 245 (360)
.+..|+.-++.+++=|.+-..++..+ +||..-
T Consensus 106 ~L~~f~~~~~~~~~Wl~eke~~~~s~-d~g~~~ 137 (210)
T 3pdy_A 106 SLHSFVAAATKELMWLNEKEEEEVGF-DWSDRN 137 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc-ccCCCc
Confidence 56777777777777777777777776 787643
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.77 E-value=44 Score=26.60 Aligned_cols=22 Identities=36% Similarity=0.373 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047848 20 RIALLEKENFELRQEVLRLKAQ 41 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQ 41 (360)
++++|+.+|..|.++..++.+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~ 49 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQ 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4666777777766666664443
No 54
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=47.68 E-value=33 Score=33.27 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=8.7
Q ss_pred hhHHHHHhhhhhhH
Q 047848 169 RNMIGEIENRSTYL 182 (360)
Q Consensus 169 ~~iLgEIeNRS~~l 182 (360)
++-|--|++...|-
T Consensus 152 le~ih~LT~~~~~e 165 (323)
T 1lwu_C 152 NEKIHLLTGQQAYR 165 (323)
T ss_dssp HHHHHHHHTTSCEE
T ss_pred ccceeccccCCCeE
Confidence 35566677666664
No 55
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.29 E-value=37 Score=26.84 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 14 QKERDARIALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 14 KkeLds~n~eLe~EnkkLeQel~~LksQI~s 44 (360)
++.++..+..|+.+...++.++.+++.++..
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555555555555555555543
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=47.01 E-value=37 Score=26.46 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 14 QKERDARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 14 KkeLds~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
++.++..+..|+.+...++.++.+++.++.
T Consensus 74 ~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 74 LETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555555555555443
No 57
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=46.81 E-value=34 Score=23.08 Aligned_cols=27 Identities=7% Similarity=0.313 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|+...++|-.+|..|+.++.+|++=+
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455556677778888888888877644
No 58
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=46.72 E-value=23 Score=25.95 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
..+++|+.+...|+.+-..|.++|..|..++....
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777777777777776655544
No 59
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=46.11 E-value=32 Score=23.33 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|+...++|-.+|..|+.++.+|++=+
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455666777778888888888777644
No 60
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=46.06 E-value=20 Score=27.52 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
-+..|+.+++.|++++.+|+.++..|+.++..
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888889988888888888888776543
No 61
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=45.95 E-value=65 Score=26.40 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhhhhhhhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELR---------------QEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLe---------------Qel~~LksQI~sL~~q~~erq 53 (360)
++..+|...+.+|-.-.+.|++..+.++ ..+..|+++|..|+.++.++.
T Consensus 9 eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 9 EVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777766777777655554 367778888888877766654
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.53 E-value=31 Score=38.36 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047848 24 LEKENFELRQEVLRLKA 40 (360)
Q Consensus 24 Le~EnkkLeQel~~Lks 40 (360)
|+++|++|+|++.+|++
T Consensus 1028 L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=44.00 E-value=68 Score=26.75 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 7 DSRIDSFQKERD-------ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 7 e~eI~~LKkeLd-------s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
..++..++.+++ +.+..|+.++..|.+.-..+...|..|+.
T Consensus 16 ~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 16 KYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555 33556666666666666666666666653
No 64
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=43.29 E-value=1e+02 Score=23.79 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 047848 33 QEVLRLKAQIS 43 (360)
Q Consensus 33 Qel~~LksQI~ 43 (360)
..+..+++++.
T Consensus 33 ~~i~~lE~eL~ 43 (84)
T 1gk4_A 33 DTIGRLQDEIQ 43 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 65
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=43.25 E-value=51 Score=22.60 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+|+...++|..++..|++++.+|++-+-
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4555566777777777777777776553
No 66
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=43.23 E-value=42 Score=22.65 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKA 40 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~Lks 40 (360)
+|+...++|..++..|++++.+|++
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555566666666667766666654
No 67
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=42.95 E-value=25 Score=26.24 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|+....+|+.+|..|..++..|+.++
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666554
No 68
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=42.36 E-value=56 Score=22.42 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+|+...++|..++..|++++.+|++-+-
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4555566677777777777777766543
No 69
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=41.67 E-value=82 Score=24.70 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+.++..++..|. ....+|+..+.+|.++...|..|+.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ 59 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMK 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554 4456666667777666666666633
No 70
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=40.98 E-value=55 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 18 DARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 18 ds~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+.+|.+|+.+.+.|++++..-+++=..++
T Consensus 13 E~~N~~Le~~v~~le~~Le~s~~~q~~~~ 41 (72)
T 3cve_A 13 EIRNKDLEGQLSEMEQRLEKSQSEQDAFR 41 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666555554444444333
No 71
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=40.97 E-value=84 Score=26.04 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhhHHHHH
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHD--NERKSMLWKK 59 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~--~erqs~l~Kk 59 (360)
|+-.+.+.|++.++ ..+.-|+...+.....+.+|.++|..|...| .-+++.+|-+
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44556666666666 3455555555555667888888888887553 3344666654
No 72
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.84 E-value=59 Score=26.83 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=5.5
Q ss_pred HHHHHHhhhhhh
Q 047848 37 RLKAQISSLKAH 48 (360)
Q Consensus 37 ~LksQI~sL~~q 48 (360)
+|+++|.+|...
T Consensus 87 dLE~~iesL~eE 98 (119)
T 3ol1_A 87 DLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 73
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.83 E-value=31 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.++|+.+...|+.+-..|..++..|..
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 74
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.48 E-value=40 Score=28.19 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+.+|+..+.+|..++..++.++.+....
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e 32 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQ 32 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444433
No 75
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=40.20 E-value=71 Score=26.04 Aligned_cols=41 Identities=10% Similarity=0.064 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 13 FQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 13 LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
-.+-|+.++..|+...++++.++..+++++..+...+-+.+
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566777777777777777777777777766655543
No 76
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.13 E-value=43 Score=25.72 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 18 DARIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 18 ds~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+....+|+..+..+..+...|..+|..|...
T Consensus 35 E~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 35 ETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555554443
No 77
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=39.90 E-value=47 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 23 LLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 23 eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+|+.+-+.|+...++|++.|+.|.
T Consensus 7 eLE~r~k~le~~naeLEervstLq 30 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQ 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555444
No 78
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.39 E-value=67 Score=30.58 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
..++.|+.+++.|++++.+|+.++.++...+.++
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r 218 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANKANAER 218 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 4788899999999999999988888877644333
No 79
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=39.28 E-value=39 Score=26.43 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
+..+++.....|+++=..|+.+|..|+.++.-.+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666677777777777777776666554443
No 80
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=39.11 E-value=35 Score=26.96 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.+|.+|+.+...|++++..-+++=..++
T Consensus 20 ~rN~~Le~~v~~le~~Le~s~~~q~~~~ 47 (79)
T 3cvf_A 20 TRNAELEHQLRAMERSLEEARAERERAR 47 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444333333
No 81
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=38.58 E-value=72 Score=25.70 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
+.+|+.++..|..++..|..+...+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~ 74 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRL 74 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 82
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=38.55 E-value=50 Score=22.40 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
+|+...++|-.+|..|+.++.+|++=+
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344455666677777777777776543
No 83
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=38.22 E-value=65 Score=28.30 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHH
Q 047848 6 DDSRIDSFQKERD-----------ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSML 56 (360)
Q Consensus 6 ~e~eI~~LKkeLd-----------s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l 56 (360)
++.+++.|...|. ..-..++..|.+|+.++.+...-|.+++.|..+.+.++
T Consensus 84 ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~ 145 (154)
T 2ocy_A 84 LNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 12445666777777777777777777777777666443
No 84
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=36.93 E-value=1.4e+02 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHhh
Q 047848 33 QEVLRLKAQISSLKAHDNERKSMLWKKLQ 61 (360)
Q Consensus 33 Qel~~LksQI~sL~~q~~erqs~l~Kkiq 61 (360)
.++..+...+..++..+..- .|.||||=
T Consensus 61 kdi~~a~~eL~~m~~~i~~e-kP~WKKiW 88 (141)
T 3okq_A 61 KDLENAQADVLKLQEFIDTE-KPHWKKTW 88 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-CchhHHHH
Confidence 46667777777777665544 49999984
No 85
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.50 E-value=90 Score=24.54 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 12 SFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 12 ~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
.....|+.+.+.++.+.+.|+.++..+..++..++.++
T Consensus 70 ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 70 KAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555554443
No 86
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=36.07 E-value=55 Score=21.60 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKA 40 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~Lks 40 (360)
+|+....+.+.+|-+|+|++++|+-
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444556667788888888887764
No 87
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=35.69 E-value=36 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
.|+.++.+|+.+..+|++++.++.+++.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555555555555555555443
No 88
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.63 E-value=63 Score=21.90 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQ 41 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQ 41 (360)
+|+...++|-.+|..|+.++++|++=
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34455566777777777777777653
No 89
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.53 E-value=1.6e+02 Score=24.17 Aligned_cols=15 Identities=7% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHhhhhhh
Q 047848 34 EVLRLKAQISSLKAH 48 (360)
Q Consensus 34 el~~LksQI~sL~~q 48 (360)
++..++.+|..|+.+
T Consensus 76 ~l~~~q~~i~~lE~e 90 (129)
T 3tnu_B 76 ALKDARNKLAELEEA 90 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 444455555555544
No 90
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=34.44 E-value=47 Score=24.20 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 9 RIDSFQKERDARIALLEKENFELRQEVLRLKAQ 41 (360)
Q Consensus 9 eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQ 41 (360)
++..+=.++-...+.|..+|..|++++.+|+.+
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333333344444555555555555554443
No 91
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.10 E-value=89 Score=25.57 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 9 RIDSFQKERDARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 9 eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
++.+-|++|++....++.+|...++-+.+++++|-
T Consensus 22 eL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 22 QLIKQKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666654
No 92
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=34.03 E-value=70 Score=21.68 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 16 ERDARIALLEKENFELRQEVLRLKA 40 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~Lks 40 (360)
+|+...++|..+|..|++++.+|++
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4555566677777777777777765
No 93
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.00 E-value=60 Score=31.97 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+.+|+.++.+|++++++++.++..+..+
T Consensus 12 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 39 (403)
T 4etp_A 12 IAALKEKIAALKEKIKDTELGMKELNEI 39 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 94
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=33.83 E-value=95 Score=25.60 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
.+.+|..+=++|+.++..|+++.=.|+..+..-.-+|..|...+.+.
T Consensus 43 ~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 43 NEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 35577777788888888888887777665555555555555444443
No 95
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=33.80 E-value=76 Score=25.30 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 047848 5 DDDSRIDSFQKERDARIA---LLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~---eLe~EnkkLeQel~~LksQI~ 43 (360)
|.++|=.+.+++|.+... .|+.++.--+.++..|.+++.
T Consensus 37 elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 37 ELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 455566666666664433 333333333445556655554
No 96
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.79 E-value=1.3e+02 Score=24.64 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 13 FQKERDARIALLEKENFELRQEVLRLKA 40 (360)
Q Consensus 13 LKkeLds~n~eLe~EnkkLeQel~~Lks 40 (360)
|..+.+....+|+.|+++|++++..|+.
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 97
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=33.33 E-value=1.4e+02 Score=21.98 Aligned_cols=41 Identities=29% Similarity=0.396 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQ 61 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq 61 (360)
..+.|+.||--|++++..-.++++.|+...-.-+ -+.|.+|
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK-evlk~lq 51 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMK-EVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH-HHHHHHc
Confidence 3455666666777666666666666665433332 3344444
No 98
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.25 E-value=60 Score=33.85 Aligned_cols=38 Identities=29% Similarity=0.344 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI 42 (360)
|++..|+.||.+++ ..+.-||+-+..+..+|.+|+.-|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777778887777 445555555555555555554433
No 99
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A 4e8o_A
Probab=32.96 E-value=15 Score=28.90 Aligned_cols=12 Identities=17% Similarity=0.182 Sum_probs=7.4
Q ss_pred ccchHHHHHHHH
Q 047848 133 VRRVPEVVELYR 144 (360)
Q Consensus 133 vrRspeVVelY~ 144 (360)
..-.+++.++|+
T Consensus 29 ~~D~~~~~~l~~ 40 (166)
T 4evy_A 29 EASLKDWLELRN 40 (166)
T ss_dssp GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345667777764
No 100
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.88 E-value=1.3e+02 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=23.5
Q ss_pred chhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 5 DDDSRIDSFQKERD-------ARIALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 5 d~e~eI~~LKkeLd-------s~n~eLe~EnkkLeQel~~LksQI~s 44 (360)
|+|..+..|+..|+ .+..++.+--++|.|.|..|+.++..
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55666666666655 34555555566666666666665554
No 101
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.79 E-value=1.8e+02 Score=24.03 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhhhh
Q 047848 34 EVLRLKAQISSLKAH 48 (360)
Q Consensus 34 el~~LksQI~sL~~q 48 (360)
++..++.+|..|+.+
T Consensus 78 ~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQ 92 (131)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555544
No 102
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=32.32 E-value=56 Score=32.37 Aligned_cols=48 Identities=23% Similarity=0.171 Sum_probs=25.2
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 12 SFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 12 ~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
.|+.+|+ .++.+|+.+++++..++..++.|+.. ..++|+ .|.-.||.+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---~~~~rr-~l~n~~~~l 57 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ---SNMERK-ELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHh
Confidence 4444444 44556666666666666666655543 234443 555555544
No 103
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=32.16 E-value=1.1e+02 Score=25.77 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 12 SFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 12 ~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
+-++-|+.+++.|+...++++.++..+++++..+...+-+.+
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777888888888888888888887776655554
No 104
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=31.87 E-value=1.2e+02 Score=22.54 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
++|+....+-..++...+.+|+.|+
T Consensus 38 eel~~~~~~~~~~l~~~k~Ei~elr 62 (77)
T 3trt_A 38 ADLSEAANRNNDALRQAKQESTEYR 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3343333333333333444444333
No 105
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.68 E-value=1.4e+02 Score=21.17 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 047848 27 ENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 27 EnkkLeQel~~LksQI~sL 45 (360)
...++..++......|+.+
T Consensus 34 ~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 34 KINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444433
No 106
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.85 E-value=44 Score=26.90 Aligned_cols=29 Identities=7% Similarity=0.027 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 10 IDSFQKERDARIALLEKENFELRQEVLRL 38 (360)
Q Consensus 10 I~~LKkeLds~n~eLe~EnkkLeQel~~L 38 (360)
|..++..+.....+++..+..|+.++.++
T Consensus 28 l~e~E~~~~~e~~~~q~~i~~lE~eL~~~ 56 (95)
T 3mov_A 28 IQELEDLLAKEKDNSRRMLTDKEREMAEI 56 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 107
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.82 E-value=1.1e+02 Score=23.93 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 23 LLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 23 eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
+|..+...-+.||.+|+.=|-+|.+-.+-+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKY 36 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKY 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444443333
No 108
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=30.80 E-value=10 Score=36.14 Aligned_cols=8 Identities=25% Similarity=0.210 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 047848 327 RLAKEYMK 334 (360)
Q Consensus 327 ~la~~ymk 334 (360)
.||.-|++
T Consensus 314 ~La~~~~~ 321 (382)
T 2h6f_A 314 FLVDIYED 321 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 109
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.63 E-value=72 Score=31.67 Aligned_cols=41 Identities=17% Similarity=0.327 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
|+..+++.|+.+++ ..++.++++.+.+..++..++.++..+
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544 334444444555555555555554443
No 110
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=30.51 E-value=1.1e+02 Score=23.58 Aligned_cols=36 Identities=8% Similarity=0.251 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 12 SFQKERDARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 12 ~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
.....|+.+.+.++.+.+.|+.++..++.++..++.
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555555554443
No 111
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.34 E-value=77 Score=23.11 Aligned_cols=26 Identities=0% Similarity=-0.024 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
++|-++.+.|..++.+|+++|..|++
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 112
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.30 E-value=63 Score=23.41 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI 42 (360)
.+|+....+|+.+|..|.+++..|...+
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556667777777777777666544
No 113
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=30.27 E-value=65 Score=24.72 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 18 DARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 18 ds~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
+.++.+|+..+..-+.++.+|++++..+.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37788888888777777777777776543
No 114
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.25 E-value=63 Score=26.53 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~s 44 (360)
..+++|+.++.+|++++..|+.++..
T Consensus 19 ~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 19 LKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55778889999999999999999875
No 115
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=30.22 E-value=1.6e+02 Score=24.30 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=22.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhhhh
Q 047848 9 RIDSFQKERD---ARIALLEKENFELRQ-------EVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 9 eI~~LKkeLd---s~n~eLe~EnkkLeQ-------el~~LksQI~sL~~q~~er 52 (360)
+|..||..|+ ....+++.++..... ....|+.++..|+.++.+|
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777 223333333333333 4444555555555555444
No 116
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.22 E-value=94 Score=24.70 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=3.8
Q ss_pred HHHHHHHHHh
Q 047848 34 EVLRLKAQIS 43 (360)
Q Consensus 34 el~~LksQI~ 43 (360)
+|..|..+|.
T Consensus 57 ~i~~Lr~~i~ 66 (93)
T 3s4r_A 57 EMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 117
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.97 E-value=67 Score=22.73 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 047848 19 ARIALLEKENFELRQE 34 (360)
Q Consensus 19 s~n~eLe~EnkkLeQe 34 (360)
.++.-|++||+=|+|-
T Consensus 24 ervstLq~EN~mLRqv 39 (42)
T 2oqq_A 24 ERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHH
Confidence 4444555555555543
No 118
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=29.95 E-value=64 Score=25.21 Aligned_cols=33 Identities=9% Similarity=0.134 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 8 SRIDSFQKERDARIALLEKENFELRQEVLRLKA 40 (360)
Q Consensus 8 ~eI~~LKkeLds~n~eLe~EnkkLeQel~~Lks 40 (360)
..|..++..+.....+++..+..++.++.++++
T Consensus 17 ~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~ 49 (86)
T 1x8y_A 17 AKLRDLEDSLARERDTSRRLLAEKEREMAEMRA 49 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 119
>4fz4_A 0197-18KD, uncharacterized protein conserved in bacteria; surface antigen, immune system; 2.44A {Streptococcus suis}
Probab=29.64 E-value=77 Score=27.97 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=33.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHH------------------------------hcCCCCHHHHHHHHHHHhhhc
Q 047848 312 MMDSGLIGQMKVSSLRLAKEYMKR------------------------------FAGGFDAETIQAFEELKKVGL 356 (360)
Q Consensus 312 mld~gii~kiK~asv~la~~ymkr------------------------------faggfd~e~~~afeelr~~~~ 356 (360)
++|+|+..+|=. ..+-+-.||+. |.+-||-+...+|+.+.+++.
T Consensus 73 L~dFg~h~k~E~-~tRqVa~YrkKYp~n~eIe~eyk~~l~qt~~~~YaSqEG~~l~~y~~~e~~~afnKI~~iV~ 146 (154)
T 4fz4_A 73 LNDFKYQIKVEN-YIRQVAELRKKYPGDNTIEEEYNAHLKQDEGKSIASQEGATLRDYVDREASEAMGRIKQRVA 146 (154)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHSCSCHHHHHHHHHHTCCCSSSSTTSCCHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhCCCchHHHHHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677766643 34445578887 888899999999999999874
No 120
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=29.39 E-value=49 Score=32.00 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 6 DDSRIDSFQKERD----ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 6 ~e~eI~~LKkeLd----s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+|......+..++ ..+..|+..+.+|+++|.+|+++|.
T Consensus 11 le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~ 52 (323)
T 1lwu_B 11 IENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIK 52 (323)
T ss_dssp HHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445544 3344455555444444444444443
No 121
>1f1m_A OSPC, outer surface protein C; LYME disease, HB19, helical bundle, dimer, immune system; 1.80A {Borrelia burgdorferi} SCOP: a.24.12.1 PDB: 1ggq_A
Probab=29.14 E-value=33 Score=30.55 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhh
Q 047848 171 MIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVES 205 (360)
Q Consensus 171 iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~ 205 (360)
|=.-|+...+|.+++|+ ||+-...|.+|+++|..
T Consensus 8 ISKKItdsnafv~aVKE-VetLv~SIDELAKAIGK 41 (164)
T 1f1m_A 8 ISKKITESNAVVLAVKE-VETLLTSIDELAKAIGK 41 (164)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTTTTE
T ss_pred HHHHhccHHHHHHHHHH-HHHHHhhHHHHHHHHhh
Confidence 45568889999999999 99999999999988843
No 122
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=29.06 E-value=46 Score=23.81 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 047848 21 IALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+++|+.++..|++.+..|.+.|.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666655543
No 123
>1yjg_A Surface protein VSPA; helical bundle, immune system; 2.22A {Borrelia turicatae}
Probab=28.86 E-value=33 Score=30.35 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=27.3
Q ss_pred HHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhh
Q 047848 174 EIENRSTYLSAIKTDVKKQKEFINFLIKEVES 205 (360)
Q Consensus 174 EIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~ 205 (360)
-|+...+|.+++|+ ||+-...|.+|+++|..
T Consensus 3 KItdsnafv~aVKE-VetLv~SIDELAKAIGK 33 (158)
T 1yjg_A 3 NITDAVAFAKSVKD-VHTLVKSIDELAKAIGK 33 (158)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHTTTTE
T ss_pred cchhHHHHHHHHHH-HHHHHhhHHHHHHHHhh
Confidence 37889999999999 99999999999988853
No 124
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=28.73 E-value=41 Score=27.40 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
+-.+|+.+++.|++++..++.+|..|++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45678888888888888888888888755
No 125
>3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP}
Probab=28.71 E-value=2e+02 Score=26.71 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=64.2
Q ss_pred hhhhHHhhhhCCCCCcchhhHHHHhhhhhhhhhhhHHHhhhcccccCCcHHHHHHHHHHHHHHHhhcchhhhhhhhccCC
Q 047848 228 LVDERAVLKHFPQWPERKADTLREAACNYRDLKNLEQEVSSFEDNQKESLPQATRKMQALQDRRACWSKGTGKKYRDFQI 307 (360)
Q Consensus 228 L~DEraVLk~F~~wPe~K~dalReAa~~y~~L~~l~~e~s~~~d~p~~p~~~~L~Km~~l~dk~Er~rd~~~~ryk~~~I 307 (360)
|+++...==.+ ..|+.-.|+|+.++.....|...+..-..|| .. -|+.+.+-++ .|-..=-
T Consensus 34 La~da~~AP~L----~~r~ala~mAaae~~hf~~L~~~l~~~G~D~----~~---am~pf~~~ld--------~fh~~T~ 94 (225)
T 3ez0_A 34 FSADARYSPTL----HDRAVLGRIAVVEFRHYELVSARLEAMGIDA----ED---AMLPFQAAVD--------YFHSRTR 94 (225)
T ss_dssp HHHHHTTCSSS----TTHHHHHHHHHHHHHHHHHHHHHHHHTTCCH----HH---HHGGGHHHHH--------HHHHTCC
T ss_pred HHHHHhhCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HH---HHHHHHHHHH--------HHHhcCC
Confidence 55554333344 6788889999999999999999999888774 22 2444443332 2333334
Q ss_pred CccccccchhhHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 047848 308 PCDWMMDSGLIGQMKVSSLRLAKEYMKRFAGGFDAETIQAFEEL 351 (360)
Q Consensus 308 p~~wmld~gii~kiK~asv~la~~ymkrfaggfd~e~~~afeel 351 (360)
|-+|. -++| |- .-..-||..|..+.|.++|+++.....++
T Consensus 95 P~dW~--E~Lv-Ka-YVgdgla~DFy~~ia~~L~~~~r~~v~~v 134 (225)
T 3ez0_A 95 PADWY--ESLM-KA-YVIDTVSADFYRAISRYVDAGTRDVIEQI 134 (225)
T ss_dssp CSSHH--HHHH-HH-HHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCChH--HHHH-HH-HHHhhHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 77771 0111 00 11234778888889999999998866543
No 126
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.70 E-value=85 Score=24.13 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~s 44 (360)
+..|+.+++.|.++..+|+.++.+
T Consensus 52 I~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555566666655555555553
No 127
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=28.67 E-value=1.2e+02 Score=25.02 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=21.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 8 SRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 8 ~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
.+|..|+..|. ....+|+.++.+|.++...|..|+.+=
T Consensus 20 eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E 60 (129)
T 2fxo_A 20 EEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAE 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554 445566666666666666665555543
No 128
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.39 E-value=1.2e+02 Score=29.32 Aligned_cols=26 Identities=12% Similarity=-0.002 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 24 LEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 24 Le~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
.+.+++.|+..+..++++|+.|+.++
T Consensus 24 ~~~~i~~L~~~l~~~~~~i~~l~~~i 49 (323)
T 1lwu_C 24 HDAQIQELSEMWRVNQQFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555444443
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.37 E-value=84 Score=31.12 Aligned_cols=51 Identities=20% Similarity=0.150 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCCCCCC
Q 047848 16 ERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNPNTDT 67 (360)
Q Consensus 16 eLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~~~~~ 67 (360)
.|+.+..+|++++++|+++++++++++..+..+..+. ..+-++++|-..|-
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~-~~~rr~l~n~~~~l 57 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS-NMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 4556777777888888888888888888887777665 47777787765543
No 130
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.27 E-value=2.3e+02 Score=22.61 Aligned_cols=9 Identities=0% Similarity=0.427 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 047848 10 IDSFQKERD 18 (360)
Q Consensus 10 I~~LKkeLd 18 (360)
+..|+.+.+
T Consensus 11 m~~lk~e~e 19 (101)
T 3u1c_A 11 MQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444444
No 131
>2ga0_A Surface protein VSPA; helical bundle, NI(II) binding sites, immune system; 2.70A {Borrelia turicatae}
Probab=28.24 E-value=41 Score=30.33 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.2
Q ss_pred hHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhh
Q 047848 170 NMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVES 205 (360)
Q Consensus 170 ~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~ 205 (360)
-|=.-|+...+|.+++|+ ||+-...|.+|+++|..
T Consensus 10 ~ISKKItdsnafv~aVKE-VetLv~SIDELAKAIGK 44 (181)
T 2ga0_A 10 TITKNITDAVAFAKSVKD-VHTLVKSIDELAKAIGK 44 (181)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTE
T ss_pred HHHHHhccHHHHHHHHHH-HHHHHhhHHHHHHHHhh
Confidence 355668889999999999 99999999999998854
No 132
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.08 E-value=2e+02 Score=21.90 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 047848 30 ELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 30 kLeQel~~LksQI~sL~~q 48 (360)
+.++++..|+-+|+.|+..
T Consensus 38 ~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3445666666666666554
No 133
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.66 E-value=1.1e+02 Score=27.53 Aligned_cols=45 Identities=20% Similarity=0.058 Sum_probs=25.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 8 SRIDSFQKERD-------ARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 8 ~eI~~LKkeLd-------s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
.++..++.+|+ ....+|+.++..++.....|++++..|.....+.
T Consensus 24 q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 3355666666666666666666666555544443
No 134
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=27.48 E-value=43 Score=24.40 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=24.3
Q ss_pred ChHHHHHHHHhhHHHhhhhhhhHHhhhh
Q 047848 210 QISEVEAFVKWLDGELSSLVDERAVLKH 237 (360)
Q Consensus 210 d~~~v~~Fv~wld~eLs~L~DEraVLk~ 237 (360)
|.++|..|.+-|-.++..|..|-.=|+.
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~~~L~~ 48 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKKTELEA 48 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999998776653
No 135
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=27.45 E-value=1.4e+02 Score=22.24 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 047848 7 DSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQIS 43 (360)
Q Consensus 7 e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~ 43 (360)
+.++.+||..-. .-+++|+..+.+.+||+.+|..=+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665444 5588888888888888888876543
No 136
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=26.95 E-value=1.9e+02 Score=26.19 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 17 RDARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 17 Lds~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
++..+..|+.+|.+|++++.++.+|+..+-
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666666666666666666655444
No 137
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=26.83 E-value=69 Score=24.79 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHD 49 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~ 49 (360)
.-|..|+.+++++.++..+|+.+...|..+.
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3488889999999998888888888877553
No 138
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=26.08 E-value=1.8e+02 Score=24.82 Aligned_cols=48 Identities=13% Similarity=0.304 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
.+.++..+=++|+.++..|+++.=.++..+..-.-+|..|+..+.+.+
T Consensus 59 s~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~ 106 (133)
T 1j1d_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHH
Confidence 467788888899988888888887777666666666666666655554
No 139
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=25.68 E-value=33 Score=33.25 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=7.8
Q ss_pred hhHHHHHhh--hhhhH
Q 047848 169 RNMIGEIEN--RSTYL 182 (360)
Q Consensus 169 ~~iLgEIeN--RS~~l 182 (360)
++-|--|++ .-.|-
T Consensus 143 le~ih~LT~~~~~~~e 158 (319)
T 1fzc_C 143 NEKIHLISTQSAIPYA 158 (319)
T ss_dssp HHHHHHHHTSTTCCEE
T ss_pred cccEEEeeccCCCCEE
Confidence 345666666 44554
No 140
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=25.62 E-value=1.3e+02 Score=21.59 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=19.4
Q ss_pred CCCchhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 047848 2 APEDDDSRIDSFQKERD-----ARIALLEKENFELRQEVLRL 38 (360)
Q Consensus 2 ~~gd~e~eI~~LKkeLd-----s~n~eLe~EnkkLeQel~~L 38 (360)
+-+++...+.+|+.-+. +-.+-|..+..+++.+++.+
T Consensus 5 ~~eeL~~DL~El~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~~ 46 (50)
T 2a26_A 5 ASEELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEIKNK 46 (50)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555 33455555566666555543
No 141
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=25.60 E-value=1.3e+02 Score=24.63 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQ---EVLRLKAQISSLKAH 48 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQ---el~~LksQI~sL~~q 48 (360)
++.++...+.+|+.++.+|+.+..+|+. ..+-|+.+-..|...
T Consensus 41 Lc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~e 86 (96)
T 1t3j_A 41 LCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESE 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566777777777777777777777763 455555555555544
No 142
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.32 E-value=1.9e+02 Score=26.16 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhh
Q 047848 137 PEVVELYRSLTRKD 150 (360)
Q Consensus 137 peVVelY~sLkkk~ 150 (360)
+.+..+|..++++.
T Consensus 175 ~~lL~~Yerir~~~ 188 (256)
T 3na7_A 175 PKIYSFYERIRRWA 188 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 67788888887643
No 143
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=25.30 E-value=15 Score=30.77 Aligned_cols=9 Identities=0% Similarity=0.102 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 047848 193 KEFINFLIK 201 (360)
Q Consensus 193 ~~~I~~L~~ 201 (360)
.+.+..|..
T Consensus 86 ~~~v~~Ll~ 94 (222)
T 3ehr_A 86 LSWLRECLD 94 (222)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 344444443
No 144
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.12 E-value=95 Score=26.03 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~s 44 (360)
.+++.|+++++.++.++.+|+.++..
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666655555555543
No 145
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.09 E-value=72 Score=21.50 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
.+|+++...|-++...|+++|..|+.-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455555556655555666665555443
No 146
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.01 E-value=82 Score=24.70 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
|..|+.+++++.+++..|+.+...|..++-+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777777776655443
No 147
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.87 E-value=4.6e+02 Score=26.23 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=53.2
Q ss_pred hhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhhHHhhhhCCCCCcchhhH
Q 047848 169 RNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDERAVLKHFPQWPERKADT 248 (360)
Q Consensus 169 ~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DEraVLk~F~~wPe~K~da 248 (360)
.+-|.+|.|+-.++++--.++-.+...|..+-+....-....-.-+-.|-.-|+....+|- +-|-.+| | -+..
T Consensus 66 ~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk--~~V~~q~---~--~ir~ 138 (390)
T 1deq_A 66 TSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILR--RKVIEQV---Q--RINL 138 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH--HHHHHHh---H--HHHH
Confidence 4568888888888888777777777777655555443332222333445555555555542 2344444 2 4445
Q ss_pred HHH-hhhhhhhhhhhHHHh
Q 047848 249 LRE-AACNYRDLKNLEQEV 266 (360)
Q Consensus 249 lRe-Aa~~y~~L~~l~~e~ 266 (360)
||- .-..+.++++||..+
T Consensus 139 Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 139 LQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 555 344566677777666
No 148
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=24.75 E-value=87 Score=25.84 Aligned_cols=47 Identities=17% Similarity=0.315 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
.+.+|..+=++|+.++..|+++.=.|+..+..-.-+|..|...+.+.
T Consensus 43 ~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 43 NEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34577888888888888888887777765555555555555444333
No 149
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=24.41 E-value=81 Score=24.25 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 8 SRIDSFQKERDARIALLEKENFELRQEVL 36 (360)
Q Consensus 8 ~eI~~LKkeLds~n~eLe~EnkkLeQel~ 36 (360)
..-..+-+.|+..++.|+.++..|.+.+.
T Consensus 46 ~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 46 RKAIDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555554443
No 150
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.37 E-value=2.1e+02 Score=22.76 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 6 DDSRIDSFQKERD---ARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 6 ~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
+-.++...+..+. +...+.+.+|+.|.+++..++.++-.|..
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 151
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=24.15 E-value=14 Score=28.09 Aligned_cols=8 Identities=25% Similarity=0.688 Sum_probs=3.8
Q ss_pred HHHHHHHH
Q 047848 137 PEVVELYR 144 (360)
Q Consensus 137 peVVelY~ 144 (360)
-+|.++|.
T Consensus 34 ~~l~~~F~ 41 (100)
T 2j76_E 34 ESIKEFFR 41 (100)
T ss_dssp SHHHHHSC
T ss_pred HHHHHHHH
Confidence 34555554
No 152
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.07 E-value=84 Score=25.16 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
..|+.+++.|++++.+|+++|..+.++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666654
No 153
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=23.83 E-value=1.1e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=32.6
Q ss_pred HHHHhHHHHHHHHHHhhhhcccChHHHHHHHHhhHHHhhhhhhhH
Q 047848 188 DVKKQKEFINFLIKEVESAVFDQISEVEAFVKWLDGELSSLVDER 232 (360)
Q Consensus 188 Dve~~~~~I~~L~~~i~~~~~~d~~~v~~Fv~wld~eLs~L~DEr 232 (360)
.|+.....|+.|.++-+ .++++|..|..-+..+|+.|.+--
T Consensus 126 ~ie~RL~~l~~L~RKyg----~~~eell~~~~~~~~eL~~l~~~~ 166 (175)
T 4abx_A 126 RVEARLSALSKLKNKYG----PTLEDVVEFGAQAAEELAGLEEDE 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHC----SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHhCcH
Confidence 55666677777777765 689999999999999999986543
No 154
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.81 E-value=1.4e+02 Score=21.62 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 17 RDARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 17 Lds~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
|+....-|++.|..|+.+++.|+..|..|+.
T Consensus 22 lenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 4445556666777777777777766666553
No 155
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.64 E-value=2.4e+02 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
....+++.+..+|++.+..|...|...+.....+
T Consensus 88 ~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~ 121 (142)
T 3gp4_A 88 KQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPA 121 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333
No 156
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=23.60 E-value=2.5e+02 Score=24.94 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhhhhhHHHH
Q 047848 5 DDDSRIDSFQKERD----------ARIALLEKENFELRQEVLRLKAQISSLKAH---DNERKSMLWK 58 (360)
Q Consensus 5 d~e~eI~~LKkeLd----------s~n~eLe~EnkkLeQel~~LksQI~sL~~q---~~erqs~l~K 58 (360)
.++.++..|...|+ .++.+|+..+.-|..++.+++..++.+... ..++-+.+.|
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 157
>1g5z_A Outer surface protein C; alpha helix protein, immune system; 2.51A {Borrelia burgdorferi} SCOP: a.24.12.1
Probab=23.50 E-value=58 Score=28.98 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHHhHHHHHHHH-HHhh
Q 047848 171 MIGEIENRSTYLSAIKTDVKKQKEFINFLI-KEVE 204 (360)
Q Consensus 171 iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~-~~i~ 204 (360)
|=.-|+...+|.+++|+ ||+-...|.+|+ ++|.
T Consensus 6 ISKKItdsnafvlaVKE-VetLv~SIDELA~KAIG 39 (164)
T 1g5z_A 6 ISKKITESNAVVLAVKE-VETLLASIDELATKAIG 39 (164)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred HhHHhccHHHHHHHHHH-HHHHHhhHHHHHHHHhh
Confidence 44568899999999999 999999999999 6553
No 158
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=23.40 E-value=2.7e+02 Score=22.76 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhC
Q 047848 7 DSRIDSFQKERDA---RIALLEKENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQN 62 (360)
Q Consensus 7 e~eI~~LKkeLds---~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~ 62 (360)
-+.+-.|+.-|++ -.++|..+.+.|+.-++.+.++-.+-+..+.+-|+.+-..+.+
T Consensus 3 an~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~ 61 (101)
T 1d7m_A 3 ANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKN 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556666666762 3566777777777777777766666666666666655444433
No 159
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.27 E-value=2.7e+02 Score=24.44 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 047848 9 RIDSFQKERD 18 (360)
Q Consensus 9 eI~~LKkeLd 18 (360)
.|..|+.++.
T Consensus 69 ~I~~L~~El~ 78 (152)
T 3a7p_A 69 TLAILQKELK 78 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 160
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=23.24 E-value=3.1e+02 Score=22.47 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=27.8
Q ss_pred ccCCCccccccchhhHHHHHHHHHHH--------HHHHHHhcCCCCHHHHHHHHHH
Q 047848 304 DFQIPCDWMMDSGLIGQMKVSSLRLA--------KEYMKRFAGGFDAETIQAFEEL 351 (360)
Q Consensus 304 ~~~Ip~~wmld~gii~kiK~asv~la--------~~ymkrfaggfd~e~~~afeel 351 (360)
-|||+++|+++.....++-. -+.+. ...+-|+ .|++.|++++.-.+
T Consensus 70 ~f~V~~~yl~~~~~~~~~~~-el~ll~~~rd~~v~~l~~r~-~~Ls~e~~~~l~~i 123 (135)
T 3r1f_A 70 FFRIKAAYFTDDEYYEKLDK-ELQWLCTMRDDGVRRIAQRA-HGLPSAAQQKVLDR 123 (135)
T ss_dssp HHTSCTHHHHCHHHHHHHHH-HHHHHHHTTSTTHHHHHHHH-TSCCHHHHHHHHHH
T ss_pred HhCCCHHHHcCCcchhhHHH-HHHHHHHHhhhhHHHHHHHH-cCCCHHHHHHHHHH
Confidence 36999999998765544321 11111 2334444 57999998776554
No 161
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=23.15 E-value=2.2e+02 Score=25.59 Aligned_cols=48 Identities=10% Similarity=0.262 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
.+.+|..+=++|+..+..|+++.=.|+..+..-.-+|..|..++.+.+
T Consensus 56 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rVnDLr 103 (182)
T 1ytz_I 56 SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQKLFDLR 103 (182)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 677888888899999999999988888877777777777777766664
No 162
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.14 E-value=64 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.040 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhh
Q 047848 28 NFELRQEVLRLKAQISSLKAHDN 50 (360)
Q Consensus 28 nkkLeQel~~LksQI~sL~~q~~ 50 (360)
...|++.+..|+.+|..|++.+.
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666655443
No 163
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.96 E-value=1.9e+02 Score=24.20 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHhhhhhh
Q 047848 7 DSRIDSFQKERDA---RIALLEKENFELRQEVLRLKA---QISSLKAH 48 (360)
Q Consensus 7 e~eI~~LKkeLds---~n~eLe~EnkkLeQel~~Lks---QI~sL~~q 48 (360)
..+|..|+.+|.. ....-+.++.+|.+++.+++. +|.=|++|
T Consensus 23 ~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQ 70 (110)
T 2v4h_A 23 SMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQ 70 (110)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777772 244445556666666666666 66666666
No 164
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.64 E-value=2.5e+02 Score=27.69 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 047848 19 ARIALLEKENFELR 32 (360)
Q Consensus 19 s~n~eLe~EnkkLe 32 (360)
.+.+.++.++++..
T Consensus 516 ~~~~~~~~~~~~~~ 529 (597)
T 3oja_B 516 ERQAFKLRETQARR 529 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHH
Confidence 33333333333333
No 165
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.60 E-value=2.8e+02 Score=23.62 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhCC
Q 047848 5 DDDSRIDSFQKERDARIALLE--------KENFELRQEVLRLKAQISSLKAHDNERKSMLWKKLQNP 63 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe--------~EnkkLeQel~~LksQI~sL~~q~~erqs~l~Kkiq~~ 63 (360)
-...||..|-..||..+..|- .-..+++.|+..|..+|.+|+.+-...=|..-++|+++
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l~~l 73 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKLMKM 73 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Confidence 345677788888873322221 12344555666666666666654333334555566665
No 166
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.55 E-value=1.4e+02 Score=23.58 Aligned_cols=56 Identities=18% Similarity=0.270 Sum_probs=39.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHhhhh--cccChHHHH----HH---HHh-hHHHhhhhhhhH
Q 047848 177 NRSTYLSAIKTDVKKQKEFINFLIKEVESA--VFDQISEVE----AF---VKW-LDGELSSLVDER 232 (360)
Q Consensus 177 NRS~~l~aIk~Dve~~~~~I~~L~~~i~~~--~~~d~~~v~----~F---v~w-ld~eLs~L~DEr 232 (360)
-|...+..|+..++...+.|..+--+|+++ ....-..+. .| ++- |..+|-.|+|.|
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d~~ 96 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVDSG 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 577889999999999999999999999988 443333333 22 333 445666666654
No 167
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.52 E-value=1.4e+02 Score=20.21 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 047848 19 ARIALLEKENFELRQEVL 36 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~ 36 (360)
..|++|+.+|..|++++.
T Consensus 14 qDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334555555555554443
No 168
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.30 E-value=23 Score=26.10 Aligned_cols=6 Identities=0% Similarity=0.351 Sum_probs=2.2
Q ss_pred HHHHHH
Q 047848 139 VVELYR 144 (360)
Q Consensus 139 VVelY~ 144 (360)
+.+.|+
T Consensus 29 l~~~F~ 34 (91)
T 2pmy_A 29 LRSVFA 34 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 169
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.26 E-value=2.2e+02 Score=20.39 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELR 32 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLe 32 (360)
++..+.+|++..|.+..+|..+..++.
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~ 36 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYK 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455566666666655555555544443
No 170
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.14 E-value=3.1e+02 Score=21.63 Aligned_cols=9 Identities=0% Similarity=0.427 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 047848 10 IDSFQKERD 18 (360)
Q Consensus 10 I~~LKkeLd 18 (360)
+..|+.+.+
T Consensus 11 m~~lk~e~e 19 (101)
T 3u59_A 11 MQMLKLDKE 19 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 171
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.10 E-value=3e+02 Score=21.90 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.|.+|..++..++.+++.|+.....|.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555554444
No 172
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.04 E-value=1.1e+02 Score=21.45 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
.+++.....|+..+..|+.++.+|.
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444
No 173
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.94 E-value=69 Score=27.63 Aligned_cols=12 Identities=8% Similarity=0.382 Sum_probs=5.0
Q ss_pred hHHHHHHHHHHH
Q 047848 7 DSRIDSFQKERD 18 (360)
Q Consensus 7 e~eI~~LKkeLd 18 (360)
+.++..|...|.
T Consensus 45 ~~e~~~L~~~l~ 56 (135)
T 2e7s_A 45 DDEVKRLREDIA 56 (135)
T ss_dssp HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 174
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.85 E-value=71 Score=26.32 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 047848 5 DDDSRIDSFQKERD---ARIALLEKENFELRQEVLRL 38 (360)
Q Consensus 5 d~e~eI~~LKkeLd---s~n~eLe~EnkkLeQel~~L 38 (360)
+.+++|-.|++.+| ....+|+.+.+-|.+++.=|
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL 102 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888 33556666666665555444
No 175
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=20.48 E-value=1.4e+02 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.338 Sum_probs=30.5
Q ss_pred hhhhHHHHHhhhhhhHHHHHHHHHHhHHHHHHHHHHhh
Q 047848 167 FTRNMIGEIENRSTYLSAIKTDVKKQKEFINFLIKEVE 204 (360)
Q Consensus 167 ~~~~iLgEIeNRS~~l~aIk~Dve~~~~~I~~L~~~i~ 204 (360)
.++..+.||+.|..-+..|+.++..-.+..+.|..-|.
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~ 45 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVE 45 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999887777777766664
No 176
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.36 E-value=21 Score=33.94 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHH
Q 047848 327 RLAKEYMKRFAGGFDAETIQAF 348 (360)
Q Consensus 327 ~la~~ymkrfaggfd~e~~~af 348 (360)
.-|..+.++.+--.|+.-...+
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHH
Confidence 4455555554333444443333
No 177
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=20.33 E-value=2.8e+02 Score=21.43 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 19 ARIALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 19 s~n~eLe~EnkkLeQel~~LksQI~s 44 (360)
.+.++++.+|+.|+..+..|+.++..
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556666666666666666665553
No 178
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.13 E-value=3e+02 Score=23.88 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHHHHHhhhhcccChHHHHHHHHh--------hHHHhhhhhhhHHhhhhC
Q 047848 197 NFLIKEVESAVFDQISEVEAFVKW--------LDGELSSLVDERAVLKHF 238 (360)
Q Consensus 197 ~~L~~~i~~~~~~d~~~v~~Fv~w--------ld~eLs~L~DEraVLk~F 238 (360)
..+.++|.. ..+++..+..|++- -+.||...|+|++-|.|-
T Consensus 57 ~~v~kdi~~-a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~Q 105 (141)
T 3okq_A 57 ETVSKDLEN-AQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQ 105 (141)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333344433 24556666666643 478999999999998887
No 179
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=20.01 E-value=3.3e+02 Score=23.72 Aligned_cols=12 Identities=8% Similarity=0.252 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHH
Q 047848 7 DSRIDSFQKERD 18 (360)
Q Consensus 7 e~eI~~LKkeLd 18 (360)
+.+|..|+.+|+
T Consensus 76 EeqIk~L~~kLK 87 (155)
T 2efr_A 76 EEEIKVLSDKLK 87 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
Done!