Query 047848
Match_columns 360
No_of_seqs 137 out of 161
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 05:58:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047848.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047848hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkpb_ a.38.1.1 (B:) Max prot 68.6 3.9 0.00028 29.7 5.2 43 5-47 40-82 (83)
2 d1nkpa_ a.38.1.1 (A:) Myc prot 66.8 4.7 0.00034 29.5 5.4 41 6-46 46-86 (88)
3 d2gtsa1 a.25.5.1 (A:4-80) Hypo 52.9 5.4 0.00039 29.1 3.4 39 209-247 3-45 (77)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 44.3 30 0.0022 26.2 6.9 38 15-52 91-128 (133)
5 d1ivsa1 a.2.7.3 (A:797-862) Va 40.7 37 0.0027 23.2 6.3 27 5-31 1-27 (66)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 36.9 39 0.0028 23.7 6.1 35 7-41 42-76 (79)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 32.1 41 0.003 24.9 5.7 15 24-38 84-98 (107)
8 d1uklc_ a.38.1.1 (C:) SREBP-2 31.0 53 0.0039 22.1 5.7 22 21-42 35-56 (61)
9 d1nkpa_ a.38.1.1 (A:) Myc prot 27.5 30 0.0022 24.8 4.1 31 21-51 54-84 (88)
10 d1fxka_ a.2.5.1 (A:) Prefoldin 26.7 68 0.0049 23.6 6.1 33 13-45 66-98 (107)
11 d1am9a_ a.38.1.1 (A:) SREBP-1a 26.1 48 0.0035 23.4 4.9 24 21-44 52-75 (80)
12 d1uklc_ a.38.1.1 (C:) SREBP-2 25.8 31 0.0022 23.4 3.6 33 3-35 24-56 (61)
13 d1l6ja1 a.20.1.2 (A:29-105) Ge 25.0 25 0.0018 25.2 3.1 13 324-336 12-24 (77)
14 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.8 87 0.0063 23.4 6.4 32 22-53 4-35 (133)
15 d1eaka1 a.20.1.2 (A:32-107) Ge 23.6 27 0.002 25.5 3.1 17 324-341 14-30 (76)
16 d1siga_ a.177.1.1 (A:) Sigma70 23.5 93 0.0068 26.3 7.3 31 293-323 273-303 (334)
17 d1lrza1 a.2.7.4 (A:245-309) Me 22.7 1.2E+02 0.0085 21.2 7.8 26 28-53 32-57 (65)
18 d1ivsa1 a.2.7.3 (A:797-862) Va 20.4 85 0.0062 21.2 5.2 11 32-42 52-62 (66)
19 d1nlwa_ a.38.1.1 (A:) Mad prot 20.3 53 0.0038 22.9 4.1 29 20-48 48-76 (79)
No 1
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.58 E-value=3.9 Score=29.66 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLKA 47 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~~ 47 (360)
+++.....+-+.|...++.|..++..|.++...|..+|..|++
T Consensus 40 ~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~g 82 (83)
T d1nkpb_ 40 QILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444444555566666777777777777777777777777653
No 2
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.82 E-value=4.7 Score=29.50 Aligned_cols=41 Identities=20% Similarity=0.110 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 047848 6 DDSRIDSFQKERDARIALLEKENFELRQEVLRLKAQISSLK 46 (360)
Q Consensus 6 ~e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL~ 46 (360)
++..-..+-+.|...+.+|..+...|.++...|..++..|+
T Consensus 46 iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~ 86 (88)
T d1nkpa_ 46 ILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444455555566666666666666666666666554
No 3
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=52.94 E-value=5.4 Score=29.07 Aligned_cols=39 Identities=31% Similarity=0.479 Sum_probs=28.7
Q ss_pred cChHHHHHHHHhhHHHhhhhhhhHHhh-hhC---CCCCcchhh
Q 047848 209 DQISEVEAFVKWLDGELSSLVDERAVL-KHF---PQWPERKAD 247 (360)
Q Consensus 209 ~d~~~v~~Fv~wld~eLs~L~DEraVL-k~F---~~wPe~K~d 247 (360)
.|-++|-.||.+|+.--+-|-||---| .|| +.|-..+-|
T Consensus 3 mdteevr~fv~hlerfkellndevngls~hf~nl~swqd~~rd 45 (77)
T d2gtsa1 3 MDTEEVREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRD 45 (77)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcchHhhhhhhHh
Confidence 477899999999999888899997655 355 445544443
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=44.26 E-value=30 Score=26.24 Aligned_cols=38 Identities=11% Similarity=0.116 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 047848 15 KERDARIALLEKENFELRQEVLRLKAQISSLKAHDNER 52 (360)
Q Consensus 15 keLds~n~eLe~EnkkLeQel~~LksQI~sL~~q~~er 52 (360)
+-++.++.+|+...++|.+++..+++++..+...+.+.
T Consensus 91 ~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l 128 (133)
T d1fxkc_ 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777776654443
No 5
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=40.74 E-value=37 Score=23.18 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 5 DDDSRIDSFQKERDARIALLEKENFEL 31 (360)
Q Consensus 5 d~e~eI~~LKkeLds~n~eLe~EnkkL 31 (360)
|++.++..|.++|+....++..=.++|
T Consensus 1 D~~~E~~RL~K~l~kl~~~i~~~~~kL 27 (66)
T d1ivsa1 1 DVEEWRRRQEKRLKELLALAERSQRKL 27 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777775544444444444
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.88 E-value=39 Score=23.67 Aligned_cols=35 Identities=17% Similarity=0.041 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 7 DSRIDSFQKERDARIALLEKENFELRQEVLRLKAQ 41 (360)
Q Consensus 7 e~eI~~LKkeLds~n~eLe~EnkkLeQel~~LksQ 41 (360)
+..-..+-+.|...+..+..++..|..+...|+.+
T Consensus 42 L~~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~ 76 (79)
T d1nlwa_ 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.06 E-value=41 Score=24.94 Aligned_cols=15 Identities=7% Similarity=0.321 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHH
Q 047848 24 LEKENFELRQEVLRL 38 (360)
Q Consensus 24 Le~EnkkLeQel~~L 38 (360)
|+.+.+.++.++.++
T Consensus 84 l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 84 IERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 8
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.03 E-value=53 Score=22.11 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 047848 21 IALLEKENFELRQEVLRLKAQI 42 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI 42 (360)
+..|+.+++.|.+++..|+++.
T Consensus 35 I~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 35 IKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445544444444443
No 9
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.54 E-value=30 Score=24.81 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISSLKAHDNE 51 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~sL~~q~~e 51 (360)
+..|+.++..|..++..|..+...|..++.+
T Consensus 54 I~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~ 84 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777776666666666666555433
No 10
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.68 E-value=68 Score=23.61 Aligned_cols=33 Identities=9% Similarity=0.255 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 047848 13 FQKERDARIALLEKENFELRQEVLRLKAQISSL 45 (360)
Q Consensus 13 LKkeLds~n~eLe~EnkkLeQel~~LksQI~sL 45 (360)
+...|..+.+.++.++++|+.++..++.++..+
T Consensus 66 ~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~ 98 (107)
T d1fxka_ 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEM 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 11
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.08 E-value=48 Score=23.35 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 047848 21 IALLEKENFELRQEVLRLKAQISS 44 (360)
Q Consensus 21 n~eLe~EnkkLeQel~~LksQI~s 44 (360)
+..|+.+++.|.++...|+..+..
T Consensus 52 I~~L~~~~~~L~~e~~~lk~~~~~ 75 (80)
T d1am9a_ 52 IRFLQHSNQKLKQENLSLRTAVHK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443
No 12
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.81 E-value=31 Score=23.41 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=22.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047848 3 PEDDDSRIDSFQKERDARIALLEKENFELRQEV 35 (360)
Q Consensus 3 ~gd~e~eI~~LKkeLds~n~eLe~EnkkLeQel 35 (360)
..+++......-+.|+..+++|+.|+..|+.+.
T Consensus 24 Ka~iL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 56 (61)
T d1uklc_ 24 KSGVLRKAIDYIKYLQQVNHKLRQENMVLKLAN 56 (61)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777777777776554
No 13
>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.97 E-value=25 Score=25.17 Aligned_cols=13 Identities=38% Similarity=0.790 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q 047848 324 SSLRLAKEYMKRF 336 (360)
Q Consensus 324 asv~la~~ymkrf 336 (360)
+++++|+.|+++|
T Consensus 12 ~d~~~a~~yL~~f 24 (77)
T d1l6ja1 12 TDRQLAEEYLYRY 24 (77)
T ss_dssp CHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHc
Confidence 5788899999984
No 14
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.83 E-value=87 Score=23.37 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 22 ALLEKENFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 22 ~eLe~EnkkLeQel~~LksQI~sL~~q~~erq 53 (360)
++|..+.+.|++++..|.+++..++..+.+.+
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555556665555555554
No 15
>d1eaka1 a.20.1.2 (A:32-107) Gelatinase A (MMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.55 E-value=27 Score=25.47 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 047848 324 SSLRLAKEYMKRFAGGFD 341 (360)
Q Consensus 324 asv~la~~ymkrfaggfd 341 (360)
+.+.+|+.|+++| |++.
T Consensus 14 ~d~e~A~~YL~~f-gyl~ 30 (76)
T d1eaka1 14 TDKELAVQYLNTF-YGCP 30 (76)
T ss_dssp CHHHHHHHHHHHH-TCCC
T ss_pred ccHHHHHHHHHHh-CCCC
Confidence 4567777777775 4443
No 16
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Probab=23.50 E-value=93 Score=26.27 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=24.0
Q ss_pred hcchhhhhhhhccCCCccccccchhhHHHHH
Q 047848 293 CWSKGTGKKYRDFQIPCDWMMDSGLIGQMKV 323 (360)
Q Consensus 293 r~rd~~~~ryk~~~Ip~~wmld~gii~kiK~ 323 (360)
|+=-+..++|..-|++|+=+.--|.+|=||-
T Consensus 273 ~lv~~~~~~~~~~~~~~~dl~~~~~~~l~~~ 303 (334)
T d1siga_ 273 RLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 303 (334)
T ss_dssp HHHHHHHTTSTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHhhHHHHHHH
Confidence 3335778999999999887777888887763
No 17
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=22.68 E-value=1.2e+02 Score=21.16 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhh
Q 047848 28 NFELRQEVLRLKAQISSLKAHDNERK 53 (360)
Q Consensus 28 nkkLeQel~~LksQI~sL~~q~~erq 53 (360)
+++-..++.+|++|+.++..-+-|.+
T Consensus 32 skK~~nk~~el~~Q~~s~~~ki~Ea~ 57 (65)
T d1lrza1 32 NKKAHNKRDNLQQQLDANEQKIEEGK 57 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444578888888888887777665
No 18
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.41 E-value=85 Score=21.18 Aligned_cols=11 Identities=9% Similarity=0.344 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 047848 32 RQEVLRLKAQI 42 (360)
Q Consensus 32 eQel~~LksQI 42 (360)
..++..++.+|
T Consensus 52 ~~~~~~l~~~l 62 (66)
T d1ivsa1 52 LEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 19
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.32 E-value=53 Score=22.93 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 047848 20 RIALLEKENFELRQEVLRLKAQISSLKAH 48 (360)
Q Consensus 20 ~n~eLe~EnkkLeQel~~LksQI~sL~~q 48 (360)
-+..|+.+++.+.++...|..+...|...
T Consensus 48 yI~~L~~~~~~l~~~~~~L~~~~~~L~~~ 76 (79)
T d1nlwa_ 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777777666543
Done!