Query 047849
Match_columns 651
No_of_seqs 409 out of 2703
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 5E-130 1E-134 972.7 55.3 566 56-627 35-646 (663)
2 PTZ00186 heat shock 70 kDa pre 100.0 8E-104 2E-108 889.0 69.4 569 57-627 27-628 (657)
3 PRK00290 dnaK molecular chaper 100.0 4E-103 8E-108 891.2 72.4 591 58-651 3-625 (627)
4 PLN03184 chloroplast Hsp70; Pr 100.0 5E-103 1E-107 889.5 71.6 571 55-627 37-639 (673)
5 PTZ00400 DnaK-type molecular c 100.0 5E-103 1E-107 889.6 70.4 571 57-627 41-641 (663)
6 PTZ00009 heat shock 70 kDa pro 100.0 7E-103 1E-107 889.2 70.9 590 55-649 2-652 (653)
7 KOG0102 Molecular chaperones m 100.0 4E-105 8E-110 823.5 46.6 574 54-627 24-630 (640)
8 PRK13411 molecular chaperone D 100.0 4E-102 9E-107 881.5 70.8 569 58-628 3-605 (653)
9 PRK13410 molecular chaperone D 100.0 1E-101 3E-106 874.8 70.6 565 58-624 3-603 (668)
10 TIGR02350 prok_dnaK chaperone 100.0 9E-99 2E-103 852.9 69.9 563 59-624 2-595 (595)
11 CHL00094 dnaK heat shock prote 100.0 1.6E-98 3E-103 850.8 69.0 565 58-624 3-599 (621)
12 KOG0101 Molecular chaperones H 100.0 5E-100 1E-104 819.1 49.6 566 55-625 5-615 (620)
13 TIGR01991 HscA Fe-S protein as 100.0 9.6E-98 2E-102 839.2 69.3 558 59-625 1-586 (599)
14 PRK05183 hscA chaperone protei 100.0 1.7E-96 4E-101 830.6 68.2 558 56-626 18-603 (616)
15 PRK01433 hscA chaperone protei 100.0 2.1E-92 4.5E-97 790.2 64.6 533 57-624 19-587 (595)
16 COG0443 DnaK Molecular chapero 100.0 3.4E-90 7.4E-95 767.9 56.0 543 57-624 5-578 (579)
17 PF00012 HSP70: Hsp70 protein; 100.0 3.8E-88 8.1E-93 772.5 63.4 562 59-624 1-602 (602)
18 KOG0103 Molecular chaperones H 100.0 4.2E-78 9.1E-83 641.3 47.4 548 59-615 3-639 (727)
19 KOG0104 Molecular chaperones G 100.0 5.3E-70 1.1E-74 579.7 42.8 560 50-622 15-735 (902)
20 PRK11678 putative chaperone; P 100.0 1.9E-52 4.2E-57 452.9 33.6 309 59-402 2-448 (450)
21 PRK13928 rod shape-determining 100.0 5.5E-36 1.2E-40 317.0 27.3 298 60-402 6-324 (336)
22 PRK13929 rod-share determining 100.0 2E-35 4.4E-40 311.8 29.3 296 59-399 6-324 (335)
23 PRK13927 rod shape-determining 100.0 3.6E-33 7.7E-38 295.8 26.4 297 59-401 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 4.1E-33 9E-38 294.8 26.7 297 60-401 5-327 (333)
25 PRK13930 rod shape-determining 100.0 5.4E-32 1.2E-36 287.0 28.3 299 59-402 10-329 (335)
26 TIGR02529 EutJ ethanolamine ut 100.0 1.6E-28 3.5E-33 246.0 21.4 197 166-397 37-238 (239)
27 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.4E-28 5.3E-33 252.3 18.2 298 59-401 3-321 (326)
28 PRK15080 ethanolamine utilizat 99.9 2E-25 4.4E-30 227.6 24.2 197 168-399 66-267 (267)
29 COG1077 MreB Actin-like ATPase 99.9 9.3E-24 2E-28 209.7 24.9 301 59-402 8-332 (342)
30 TIGR01174 ftsA cell division p 99.9 1.3E-21 2.9E-26 210.0 22.8 188 204-398 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 4.6E-22 9.9E-27 216.2 18.4 190 206-401 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 6.3E-19 1.4E-23 186.8 17.5 232 160-402 97-381 (418)
33 COG4820 EutJ Ethanolamine util 99.7 1E-15 2.2E-20 141.4 14.2 192 173-399 76-272 (277)
34 PLN00130 succinate dehydrogena 99.6 3.3E-17 7.2E-22 147.1 -1.1 77 1-77 1-77 (213)
35 cd00012 ACTIN Actin; An ubiqui 99.6 3.3E-14 7.1E-19 153.0 16.0 292 60-401 2-347 (371)
36 smart00268 ACTIN Actin. ACTIN 99.5 7.1E-13 1.5E-17 142.8 16.8 286 59-401 3-347 (373)
37 PRK13917 plasmid segregation p 99.4 1.4E-11 3E-16 130.5 21.1 198 193-404 115-339 (344)
38 PTZ00280 Actin-related protein 99.3 4.7E-10 1E-14 122.4 24.1 273 58-378 5-337 (414)
39 TIGR03739 PRTRC_D PRTRC system 99.1 8.7E-10 1.9E-14 116.0 16.3 198 189-399 101-318 (320)
40 TIGR01175 pilM type IV pilus a 99.1 8E-10 1.7E-14 118.0 15.9 172 203-399 142-347 (348)
41 PTZ00452 actin; Provisional 99.1 5.4E-09 1.2E-13 112.2 21.4 293 55-401 3-349 (375)
42 PF00022 Actin: Actin; InterP 99.1 4.5E-09 9.8E-14 114.1 19.1 284 57-402 4-368 (393)
43 PF06406 StbA: StbA protein; 99.1 1.6E-10 3.4E-15 121.3 6.5 166 219-396 141-316 (318)
44 PTZ00281 actin; Provisional 99.0 5.6E-09 1.2E-13 112.4 17.2 203 190-401 101-350 (376)
45 PF11104 PilM_2: Type IV pilus 99.0 5.9E-09 1.3E-13 110.8 14.3 196 178-399 94-339 (340)
46 PTZ00004 actin-2; Provisional 99.0 4.4E-08 9.5E-13 105.6 20.4 287 57-401 6-352 (378)
47 PTZ00466 actin-like protein; P 98.9 6.1E-08 1.3E-12 104.2 19.0 203 190-401 106-354 (380)
48 COG4972 PilM Tfp pilus assembl 98.8 4.7E-07 1E-11 91.3 19.2 270 58-380 11-314 (354)
49 TIGR03192 benz_CoA_bzdQ benzoy 98.7 2.7E-07 5.8E-12 93.7 16.1 72 326-401 216-288 (293)
50 TIGR00241 CoA_E_activ CoA-subs 98.7 1.8E-07 4E-12 94.8 13.9 69 325-398 179-248 (248)
51 PRK10719 eutA reactivating fac 98.7 2.4E-07 5.1E-12 98.9 14.4 147 191-366 89-268 (475)
52 PF07520 SrfB: Virulence facto 98.5 2.6E-06 5.7E-11 97.9 17.5 91 314-409 729-842 (1002)
53 TIGR03286 methan_mark_15 putat 98.4 4E-06 8.8E-11 88.4 15.3 71 326-400 331-402 (404)
54 COG1924 Activator of 2-hydroxy 98.4 1.4E-05 3.1E-10 82.3 17.9 75 324-402 316-391 (396)
55 KOG0679 Actin-related protein 98.2 0.00018 3.9E-09 74.0 20.8 154 56-259 10-172 (426)
56 TIGR02261 benz_CoA_red_D benzo 98.2 6.5E-05 1.4E-09 75.4 17.1 71 326-399 187-262 (262)
57 PRK13317 pantothenate kinase; 98.0 0.00038 8.3E-09 71.3 17.6 48 353-400 222-273 (277)
58 COG5277 Actin and related prot 97.9 0.00065 1.4E-08 74.0 19.1 67 191-259 107-174 (444)
59 COG4457 SrfB Uncharacterized p 97.5 0.0036 7.7E-08 68.6 16.2 90 315-409 742-854 (1014)
60 PF08841 DDR: Diol dehydratase 97.5 0.00055 1.2E-08 67.9 9.3 180 213-398 105-328 (332)
61 PF06277 EutA: Ethanolamine ut 97.4 0.0069 1.5E-07 65.3 17.3 68 193-260 88-162 (473)
62 TIGR02259 benz_CoA_red_A benzo 97.4 0.00063 1.4E-08 71.4 8.8 71 326-399 357-432 (432)
63 KOG0797 Actin-related protein 97.1 0.0035 7.6E-08 66.9 11.0 94 162-259 194-293 (618)
64 KOG0676 Actin and related prot 96.9 0.0099 2.2E-07 62.8 12.2 61 191-256 100-160 (372)
65 PF02782 FGGY_C: FGGY family o 96.8 0.0014 3.1E-08 63.7 4.6 76 325-401 120-196 (198)
66 PRK15027 xylulokinase; Provisi 96.1 0.0097 2.1E-07 66.5 6.8 52 353-404 386-437 (484)
67 PLN02669 xylulokinase 96.0 0.017 3.6E-07 65.6 7.8 72 328-401 421-492 (556)
68 TIGR01315 5C_CHO_kinase FGGY-f 95.8 0.016 3.4E-07 65.7 6.8 84 319-403 409-492 (541)
69 PF01968 Hydantoinase_A: Hydan 95.4 0.026 5.6E-07 58.5 6.0 65 330-397 218-283 (290)
70 PRK00047 glpK glycerol kinase; 95.3 0.034 7.4E-07 62.4 7.0 78 326-404 375-453 (498)
71 PRK04123 ribulokinase; Provisi 95.2 0.037 8E-07 62.9 7.0 75 327-402 412-487 (548)
72 TIGR01311 glycerol_kin glycero 95.2 0.032 7E-07 62.5 6.3 78 326-404 371-449 (493)
73 TIGR01312 XylB D-xylulose kina 95.2 0.042 9E-07 61.4 7.2 79 325-404 361-440 (481)
74 TIGR02628 fuculo_kin_coli L-fu 95.1 0.036 7.7E-07 61.7 6.4 77 325-404 364-443 (465)
75 PTZ00294 glycerol kinase-like 95.1 0.041 8.8E-07 61.9 6.8 78 326-404 378-456 (504)
76 TIGR01234 L-ribulokinase L-rib 95.0 0.045 9.8E-07 62.0 6.8 77 327-404 409-486 (536)
77 PRK10331 L-fuculokinase; Provi 94.9 0.046 1E-06 60.9 6.5 77 327-404 362-439 (470)
78 TIGR01314 gntK_FGGY gluconate 94.7 0.056 1.2E-06 60.8 6.7 75 326-404 373-451 (505)
79 PLN02295 glycerol kinase 94.6 0.066 1.4E-06 60.3 6.8 79 325-404 378-462 (512)
80 TIGR02627 rhamnulo_kin rhamnul 94.6 0.054 1.2E-06 60.0 6.0 50 353-404 387-436 (454)
81 COG4819 EutA Ethanolamine util 94.5 0.57 1.2E-05 48.0 12.2 19 242-260 146-164 (473)
82 KOG2517 Ribulose kinase and re 94.4 0.089 1.9E-06 57.7 6.9 79 326-405 386-465 (516)
83 PRK10939 autoinducer-2 (AI-2) 94.4 0.075 1.6E-06 60.0 6.5 50 353-403 409-458 (520)
84 PRK10854 exopolyphosphatase; P 94.2 0.53 1.2E-05 53.0 12.7 53 206-259 99-155 (513)
85 smart00842 FtsA Cell division 94.2 0.15 3.2E-06 49.2 7.3 29 205-233 158-186 (187)
86 PRK10640 rhaB rhamnulokinase; 94.1 0.08 1.7E-06 58.9 5.9 50 353-404 375-424 (471)
87 PRK13321 pantothenate kinase; 93.8 2 4.4E-05 43.6 15.2 19 59-77 2-20 (256)
88 KOG2531 Sugar (pentulose and h 93.6 0.18 3.8E-06 53.8 6.9 56 345-401 434-489 (545)
89 PRK11031 guanosine pentaphosph 93.3 1.3 2.9E-05 49.6 13.9 54 205-259 93-150 (496)
90 PRK13318 pantothenate kinase; 93.2 5 0.00011 40.7 16.8 19 59-77 2-20 (258)
91 KOG0677 Actin-related protein 92.9 2.2 4.9E-05 42.3 12.8 205 189-404 100-364 (389)
92 PRK09698 D-allose kinase; Prov 92.8 6.7 0.00014 40.7 17.7 41 216-258 104-146 (302)
93 COG1548 Predicted transcriptio 92.8 0.55 1.2E-05 46.5 8.4 72 175-259 76-148 (330)
94 PF13941 MutL: MutL protein 92.8 0.58 1.2E-05 51.2 9.6 43 59-108 2-46 (457)
95 COG0248 GppA Exopolyphosphatas 92.8 1.2 2.6E-05 49.4 12.3 90 169-259 52-147 (492)
96 PF14450 FtsA: Cell division p 92.5 0.07 1.5E-06 47.5 1.8 19 243-261 1-19 (120)
97 COG1070 XylB Sugar (pentulose 92.4 0.3 6.5E-06 54.9 7.1 50 352-401 400-449 (502)
98 KOG0680 Actin-related protein 91.6 8.4 0.00018 39.7 15.3 27 58-84 4-30 (400)
99 TIGR03706 exo_poly_only exopol 90.5 4.6 0.0001 42.0 13.3 51 208-259 90-143 (300)
100 COG1521 Pantothenate kinase ty 90.4 17 0.00038 36.6 16.5 44 322-365 181-224 (251)
101 PF14450 FtsA: Cell division p 90.0 0.081 1.7E-06 47.1 -0.4 56 174-233 51-119 (120)
102 KOG1385 Nucleoside phosphatase 89.9 1.9 4E-05 45.9 9.5 151 56-259 66-231 (453)
103 COG1940 NagC Transcriptional r 89.9 21 0.00045 37.2 17.8 35 216-251 106-143 (314)
104 COG1069 AraB Ribulose kinase [ 88.9 0.75 1.6E-05 50.5 5.9 83 320-403 398-480 (544)
105 TIGR03281 methan_mark_12 putat 88.6 5.6 0.00012 40.8 11.5 178 223-412 128-322 (326)
106 PF01869 BcrAD_BadFG: BadF/Bad 88.5 1.5 3.2E-05 44.9 7.7 70 327-399 197-271 (271)
107 PF02541 Ppx-GppA: Ppx/GppA ph 88.0 1.8 3.8E-05 44.7 8.0 51 208-259 76-130 (285)
108 COG5026 Hexokinase [Carbohydra 86.7 3.6 7.8E-05 44.1 9.1 23 53-75 71-93 (466)
109 PLN02666 5-oxoprolinase 86.0 2.5 5.4E-05 52.3 8.7 58 337-397 472-530 (1275)
110 KOG0681 Actin-related protein 85.2 0.72 1.6E-05 50.3 3.2 67 336-402 539-615 (645)
111 PF07318 DUF1464: Protein of u 84.6 11 0.00024 39.6 11.4 53 352-404 259-318 (343)
112 TIGR00744 ROK_glcA_fam ROK fam 82.9 19 0.00041 37.6 12.9 90 167-258 33-140 (318)
113 TIGR00555 panK_eukar pantothen 82.5 2.1 4.6E-05 43.9 5.2 71 326-397 204-278 (279)
114 COG0554 GlpK Glycerol kinase [ 81.9 3.1 6.8E-05 45.2 6.4 87 317-404 364-452 (499)
115 PRK00976 hypothetical protein; 81.1 7.7 0.00017 40.5 8.7 57 353-411 263-321 (326)
116 PF00370 FGGY_N: FGGY family o 79.3 2.1 4.6E-05 42.9 4.0 20 58-77 1-20 (245)
117 COG0145 HyuA N-methylhydantoin 76.8 2.7 5.8E-05 48.6 4.2 41 219-259 254-296 (674)
118 smart00732 YqgFc Likely ribonu 76.2 2.7 5.8E-05 35.5 3.2 18 59-76 3-20 (99)
119 COG1070 XylB Sugar (pentulose 73.9 3.7 8E-05 46.1 4.4 24 55-78 2-25 (502)
120 PRK09557 fructokinase; Reviewe 73.8 35 0.00076 35.3 11.5 41 216-258 96-139 (301)
121 PLN02596 hexokinase-like 73.5 16 0.00034 40.7 9.0 51 207-258 209-261 (490)
122 PF03702 UPF0075: Uncharacteri 73.3 8.9 0.00019 41.0 6.8 73 326-401 260-337 (364)
123 KOG0681 Actin-related protein 73.1 25 0.00054 38.9 10.0 68 192-262 118-189 (645)
124 COG1382 GimC Prefoldin, chaper 72.7 63 0.0014 28.5 10.6 75 550-625 23-110 (119)
125 PRK09585 anmK anhydro-N-acetyl 71.4 14 0.00031 39.4 7.8 70 329-401 265-338 (365)
126 PF03652 UPF0081: Uncharacteri 68.4 5.7 0.00012 36.0 3.5 21 58-78 2-22 (135)
127 PRK14101 bifunctional glucokin 68.1 16 0.00036 42.3 8.1 50 328-377 244-296 (638)
128 PRK03011 butyrate kinase; Prov 67.9 6.7 0.00015 41.9 4.5 46 353-398 295-344 (358)
129 PLN02405 hexokinase 67.9 16 0.00035 40.8 7.5 50 206-256 208-259 (497)
130 TIGR03123 one_C_unchar_1 proba 67.6 5 0.00011 41.9 3.4 31 227-259 116-146 (318)
131 PRK00047 glpK glycerol kinase; 66.7 5.5 0.00012 44.7 3.8 21 57-77 5-25 (498)
132 PTZ00294 glycerol kinase-like 66.1 5.4 0.00012 44.8 3.6 21 58-78 3-23 (504)
133 PRK10939 autoinducer-2 (AI-2) 66.0 5.4 0.00012 45.0 3.5 20 58-77 4-23 (520)
134 PLN02362 hexokinase 66.0 18 0.00038 40.6 7.4 21 55-75 93-113 (509)
135 cd06007 R3H_DEXH_helicase R3H 65.5 19 0.00041 27.6 5.3 39 180-220 6-44 (59)
136 PRK10331 L-fuculokinase; Provi 64.8 6.1 0.00013 44.0 3.6 20 58-77 3-22 (470)
137 TIGR02628 fuculo_kin_coli L-fu 62.6 6.9 0.00015 43.5 3.5 20 58-77 2-21 (465)
138 PRK00109 Holliday junction res 62.1 9.8 0.00021 34.7 3.8 21 57-77 4-24 (138)
139 PRK15027 xylulokinase; Provisi 60.8 7.6 0.00016 43.4 3.5 19 59-77 2-20 (484)
140 PRK13310 N-acetyl-D-glucosamin 60.0 1.1E+02 0.0024 31.5 11.9 42 215-258 95-139 (303)
141 KOG1369 Hexokinase [Carbohydra 59.7 48 0.001 36.6 9.1 59 200-259 188-249 (474)
142 TIGR01314 gntK_FGGY gluconate 59.4 8.3 0.00018 43.4 3.5 20 58-77 1-20 (505)
143 TIGR00143 hypF [NiFe] hydrogen 58.8 18 0.0004 42.3 6.2 48 353-400 658-711 (711)
144 TIGR02259 benz_CoA_red_A benzo 58.5 8.1 0.00018 41.3 2.9 22 57-78 2-23 (432)
145 TIGR01311 glycerol_kin glycero 58.4 8.9 0.00019 43.0 3.5 20 58-77 2-21 (493)
146 PLN02920 pantothenate kinase 1 58.0 25 0.00054 37.7 6.4 50 351-400 295-351 (398)
147 PRK04123 ribulokinase; Provisi 57.8 9.2 0.0002 43.5 3.5 18 58-75 4-21 (548)
148 PF02543 CmcH_NodU: Carbamoylt 57.6 34 0.00073 36.7 7.5 82 318-404 131-216 (360)
149 PF14574 DUF4445: Domain of un 57.6 36 0.00079 37.0 7.8 58 324-381 54-111 (412)
150 PLN02295 glycerol kinase 57.4 9.5 0.00021 43.0 3.5 19 58-76 1-19 (512)
151 TIGR01234 L-ribulokinase L-rib 57.2 9.7 0.00021 43.2 3.6 18 58-75 2-19 (536)
152 TIGR01315 5C_CHO_kinase FGGY-f 56.7 9.8 0.00021 43.2 3.5 19 59-77 2-20 (541)
153 PF03646 FlaG: FlaG protein; 56.5 20 0.00043 31.0 4.6 45 491-542 54-99 (107)
154 PTZ00107 hexokinase; Provision 56.5 33 0.00072 38.0 7.4 21 55-75 72-92 (464)
155 PLN02669 xylulokinase 55.2 13 0.00028 42.4 4.1 24 54-77 5-28 (556)
156 cd00529 RuvC_resolvase Hollida 55.0 16 0.00034 33.9 4.0 17 59-75 2-18 (154)
157 PF00349 Hexokinase_1: Hexokin 54.3 63 0.0014 31.6 8.3 23 241-263 63-85 (206)
158 cd02640 R3H_NRF R3H domain of 54.1 61 0.0013 24.9 6.3 42 178-220 4-45 (60)
159 COG0816 Predicted endonuclease 53.5 14 0.0003 33.8 3.2 21 57-77 2-22 (141)
160 PRK09604 UGMP family protein; 52.6 21 0.00045 37.8 4.9 46 353-398 254-305 (332)
161 PLN02914 hexokinase 51.4 75 0.0016 35.5 9.1 21 55-75 93-113 (490)
162 COG3426 Butyrate kinase [Energ 49.3 32 0.0007 35.0 5.2 48 350-397 293-344 (358)
163 PRK05082 N-acetylmannosamine k 49.1 2.4E+02 0.0053 28.8 12.3 48 353-400 233-287 (291)
164 PF13941 MutL: MutL protein 49.0 71 0.0015 35.3 8.3 53 243-295 2-58 (457)
165 PRK00039 ruvC Holliday junctio 48.9 14 0.0003 34.8 2.6 20 57-76 2-21 (164)
166 COG0533 QRI7 Metal-dependent p 47.5 54 0.0012 34.5 6.8 72 320-396 229-306 (342)
167 COG2971 Predicted N-acetylgluc 47.4 3.5E+02 0.0075 28.1 18.6 64 331-401 227-291 (301)
168 TIGR03723 bact_gcp putative gl 47.1 31 0.00067 36.2 5.1 44 353-396 259-308 (314)
169 COG4020 Uncharacterized protei 46.7 2.1E+02 0.0046 28.7 10.3 172 223-410 134-326 (332)
170 PLN03184 chloroplast Hsp70; Pr 46.0 1E+02 0.0022 36.1 9.7 11 638-648 663-673 (673)
171 cd02641 R3H_Smubp-2_like R3H d 45.4 86 0.0019 24.0 6.0 43 178-221 4-46 (60)
172 PRK08868 flagellar protein Fla 44.8 59 0.0013 29.7 5.8 45 491-542 88-133 (144)
173 PRK07738 flagellar protein Fla 43.9 65 0.0014 28.4 5.8 44 492-542 64-108 (117)
174 PRK09343 prefoldin subunit bet 42.0 2.5E+02 0.0054 24.9 9.8 43 579-622 66-108 (121)
175 COG2192 Predicted carbamoyl tr 41.8 3.1E+02 0.0068 30.8 11.8 82 318-403 254-337 (555)
176 PLN03173 chalcone synthase; Pr 41.0 87 0.0019 33.9 7.6 52 330-381 100-152 (391)
177 PF08392 FAE1_CUT1_RppA: FAE1/ 40.8 88 0.0019 32.3 7.0 45 336-380 87-132 (290)
178 PLN02377 3-ketoacyl-CoA syntha 40.3 57 0.0012 36.5 6.1 56 325-380 165-221 (502)
179 cd02646 R3H_G-patch R3H domain 40.2 72 0.0016 24.1 4.9 42 176-220 2-43 (58)
180 PF03904 DUF334: Domain of unk 40.0 3.7E+02 0.008 26.6 10.6 14 526-539 39-52 (230)
181 PF07865 DUF1652: Protein of u 39.7 1.1E+02 0.0023 24.3 5.8 49 492-541 15-66 (69)
182 PTZ00340 O-sialoglycoprotein e 39.7 47 0.001 35.2 5.1 41 333-378 248-288 (345)
183 COG1334 FlaG Uncharacterized f 39.6 70 0.0015 28.3 5.3 42 492-540 67-109 (120)
184 PLN03172 chalcone synthase fam 39.3 95 0.0021 33.7 7.5 52 330-381 100-152 (393)
185 PF14574 DUF4445: Domain of un 39.0 72 0.0016 34.8 6.4 58 316-374 291-348 (412)
186 PRK08452 flagellar protein Fla 37.4 96 0.0021 27.7 5.9 43 492-541 71-114 (124)
187 PLN03170 chalcone synthase; Pr 37.2 82 0.0018 34.3 6.7 52 330-381 104-156 (401)
188 PLN03168 chalcone synthase; Pr 36.8 1.1E+02 0.0023 33.2 7.5 53 329-381 98-151 (389)
189 TIGR00250 RNAse_H_YqgF RNAse H 36.8 25 0.00055 31.6 2.2 17 60-76 1-17 (130)
190 PF02075 RuvC: Crossover junct 35.7 21 0.00045 33.0 1.5 18 59-76 1-18 (149)
191 KOG3838 Mannose lectin ERGIC-5 35.5 3.9E+02 0.0085 28.6 10.7 19 603-621 330-348 (497)
192 PF00349 Hexokinase_1: Hexokin 35.4 32 0.0007 33.6 2.9 22 54-75 60-81 (206)
193 PRK12408 glucokinase; Provisio 35.0 27 0.00059 37.0 2.5 24 53-76 12-35 (336)
194 PRK09605 bifunctional UGMP fam 34.7 71 0.0015 36.1 6.0 49 353-401 245-299 (535)
195 PRK05082 N-acetylmannosamine k 34.3 1.1E+02 0.0025 31.2 7.0 35 216-251 96-132 (291)
196 KOG1029 Endocytic adaptor prot 33.7 3E+02 0.0064 32.2 10.1 44 581-624 564-610 (1118)
197 TIGR02707 butyr_kinase butyrat 33.4 38 0.00083 36.1 3.3 45 353-397 293-341 (351)
198 PRK14878 UGMP family protein; 32.9 82 0.0018 33.1 5.7 25 353-377 241-265 (323)
199 PRK13331 pantothenate kinase; 32.4 56 0.0012 33.0 4.1 23 56-78 6-28 (251)
200 PLN02854 3-ketoacyl-CoA syntha 32.2 93 0.002 35.0 6.1 45 336-380 192-237 (521)
201 COG1940 NagC Transcriptional r 32.1 2.5E+02 0.0054 29.0 9.2 32 369-401 98-129 (314)
202 COG5185 HEC1 Protein involved 32.0 4.4E+02 0.0095 29.0 10.6 71 530-600 281-364 (622)
203 PRK00292 glk glucokinase; Prov 31.9 43 0.00094 34.9 3.4 44 214-258 88-144 (316)
204 PRK13328 pantothenate kinase; 31.8 1.5E+02 0.0033 30.0 7.1 70 322-400 183-252 (255)
205 PF06160 EzrA: Septation ring 31.8 5.3E+02 0.012 29.4 12.3 87 529-618 114-206 (560)
206 KOG2517 Ribulose kinase and re 31.7 47 0.001 37.0 3.7 21 56-76 5-25 (516)
207 cd02639 R3H_RRM R3H domain of 31.5 97 0.0021 23.8 4.3 30 192-221 17-46 (60)
208 PF00480 ROK: ROK family; Int 30.8 1.8E+02 0.0038 27.1 7.2 85 166-258 31-134 (179)
209 PRK13326 pantothenate kinase; 30.4 51 0.0011 33.6 3.5 21 58-78 7-27 (262)
210 PRK13320 pantothenate kinase; 30.2 55 0.0012 32.9 3.7 21 58-78 3-23 (244)
211 PRK13310 N-acetyl-D-glucosamin 29.9 1.1E+02 0.0024 31.6 6.1 68 331-399 224-300 (303)
212 PRK09557 fructokinase; Reviewe 29.3 1.4E+02 0.0031 30.7 6.8 47 353-399 244-299 (301)
213 PF02801 Ketoacyl-synt_C: Beta 29.2 66 0.0014 28.2 3.6 47 333-379 24-72 (119)
214 KOG1794 N-Acetylglucosamine ki 28.8 1.5E+02 0.0033 30.5 6.3 49 356-404 266-319 (336)
215 PRK10972 Z-ring-associated pro 28.1 4E+02 0.0088 23.2 9.1 63 553-620 28-95 (109)
216 PRK11637 AmiB activator; Provi 27.7 5.2E+02 0.011 28.2 11.1 68 552-624 66-135 (428)
217 cd07313 terB_like_2 tellurium 27.4 2.8E+02 0.0061 23.2 7.2 69 524-592 13-82 (104)
218 COG2433 Uncharacterized conser 27.2 5.1E+02 0.011 29.5 10.5 60 547-612 447-508 (652)
219 TIGR00329 gcp_kae1 metallohydr 26.8 1.4E+02 0.003 31.1 6.1 68 327-399 237-305 (305)
220 PRK07515 3-oxoacyl-(acyl carri 26.6 1.1E+02 0.0023 32.8 5.4 49 329-379 266-314 (372)
221 PLN02192 3-ketoacyl-CoA syntha 26.5 1.4E+02 0.0031 33.4 6.4 56 325-380 169-225 (511)
222 KOG0103 Molecular chaperones H 26.4 2.2E+02 0.0048 32.8 7.7 41 581-621 671-725 (727)
223 TIGR01312 XylB D-xylulose kina 26.0 43 0.00094 37.2 2.3 17 60-76 1-17 (481)
224 COG4012 Uncharacterized protei 26.0 1.7E+02 0.0038 29.6 6.0 39 221-259 207-245 (342)
225 PRK00488 pheS phenylalanyl-tRN 25.9 5.9E+02 0.013 27.0 10.4 76 530-613 3-81 (339)
226 KOG2707 Predicted metalloprote 25.4 2.1E+02 0.0045 30.3 6.7 47 332-378 284-330 (405)
227 smart00787 Spc7 Spc7 kinetocho 25.3 8E+02 0.017 25.7 11.5 80 527-614 201-286 (312)
228 PLN00078 photosystem I reactio 25.1 2.6E+02 0.0057 23.8 6.0 14 586-599 108-121 (122)
229 PRK00180 acetate kinase A/prop 25.1 2E+02 0.0044 31.2 7.0 47 329-378 302-349 (402)
230 TIGR01319 glmL_fam conserved h 25.0 38 0.00082 37.1 1.5 18 242-259 250-267 (463)
231 PF03484 B5: tRNA synthetase B 24.8 1.5E+02 0.0032 23.3 4.6 56 121-176 8-66 (70)
232 COG5026 Hexokinase [Carbohydra 24.4 81 0.0017 34.2 3.7 26 241-266 75-101 (466)
233 PRK01433 hscA chaperone protei 24.4 1.9E+02 0.004 33.4 7.0 19 553-571 534-552 (595)
234 TIGR02627 rhamnulo_kin rhamnul 24.3 36 0.00079 37.6 1.2 17 60-76 1-17 (454)
235 PRK12419 riboflavin synthase s 23.9 89 0.0019 29.1 3.5 73 317-401 12-84 (158)
236 PLN03171 chalcone synthase-lik 23.8 3.5E+02 0.0076 29.4 8.7 52 330-381 106-158 (399)
237 PRK09174 F0F1 ATP synthase sub 23.6 6.9E+02 0.015 24.3 10.3 17 606-622 164-180 (204)
238 PF01548 DEDD_Tnp_IS110: Trans 23.6 1.2E+02 0.0026 27.2 4.4 20 59-78 1-20 (144)
239 PRK13320 pantothenate kinase; 23.3 1.6E+02 0.0036 29.5 5.6 44 321-365 172-215 (244)
240 KOG0104 Molecular chaperones G 23.3 1E+03 0.022 28.1 12.0 49 576-624 774-837 (902)
241 cd01741 GATase1_1 Subgroup of 23.2 1.1E+02 0.0025 28.9 4.3 49 351-404 44-100 (188)
242 PF01765 RRF: Ribosome recycli 23.0 6.1E+02 0.013 23.6 9.1 59 526-593 86-146 (165)
243 PRK04778 septation ring format 22.6 8.8E+02 0.019 27.7 12.0 83 529-614 118-206 (569)
244 TIGR00671 baf pantothenate kin 22.1 2.3E+02 0.005 28.4 6.4 115 230-366 105-219 (243)
245 TIGR00555 panK_eukar pantothen 21.8 1.1E+02 0.0025 31.4 4.1 17 59-75 2-18 (279)
246 PF03309 Pan_kinase: Type III 21.8 1.1E+02 0.0023 29.9 3.9 20 59-78 1-20 (206)
247 PRK14878 UGMP family protein; 21.7 1.2E+02 0.0026 31.9 4.5 66 327-393 39-110 (323)
248 COG0554 GlpK Glycerol kinase [ 21.7 83 0.0018 34.6 3.2 21 56-76 4-24 (499)
249 PRK14143 heat shock protein Gr 21.7 8.2E+02 0.018 24.5 10.6 66 556-621 94-164 (238)
250 COG2410 Predicted nuclease (RN 21.6 1.4E+02 0.003 28.1 4.1 30 58-87 2-32 (178)
251 PRK12879 3-oxoacyl-(acyl carri 21.4 1.9E+02 0.0042 30.0 6.0 51 327-380 218-268 (325)
252 cd00529 RuvC_resolvase Hollida 21.2 1.8E+02 0.0039 26.9 5.0 135 242-395 1-148 (154)
253 PF08735 DUF1786: Putative pyr 21.1 3.4E+02 0.0074 27.4 7.2 109 158-272 83-200 (254)
254 PRK13326 pantothenate kinase; 21.0 2.2E+02 0.0048 28.9 6.1 70 322-400 185-254 (262)
255 PF15290 Syntaphilin: Golgi-lo 21.0 6.2E+02 0.013 25.9 8.8 25 546-570 81-105 (305)
256 PRK13324 pantothenate kinase; 20.9 3.2E+02 0.007 27.7 7.2 19 59-77 2-20 (258)
257 PF01869 BcrAD_BadFG: BadF/Bad 20.8 1.1E+02 0.0025 30.9 4.0 19 60-78 1-19 (271)
258 COG0533 QRI7 Metal-dependent p 20.8 2.1E+02 0.0046 30.2 5.9 46 326-371 44-89 (342)
259 PF04848 Pox_A22: Poxvirus A22 20.8 1.1E+02 0.0024 28.0 3.4 20 58-77 2-21 (143)
260 TIGR03722 arch_KAE1 universal 20.7 1.4E+02 0.0031 31.2 4.8 44 327-370 40-83 (322)
261 PRK10869 recombination and rep 20.6 1.2E+03 0.026 26.6 12.4 19 601-619 343-361 (553)
262 cd04036 C2_cPLA2 C2 domain pre 20.5 5.4E+02 0.012 22.0 8.3 69 435-508 44-115 (119)
263 COG5418 Predicted secreted pro 20.4 1.7E+02 0.0038 26.6 4.4 72 285-361 30-104 (164)
264 KOG3591 Alpha crystallins [Pos 20.3 7.2E+02 0.016 23.5 8.9 93 423-524 69-164 (173)
265 TIGR01865 cas_Csn1 CRISPR-asso 20.2 80 0.0017 37.7 3.0 20 58-77 2-21 (805)
266 PF00814 Peptidase_M22: Glycop 20.1 7.2E+02 0.016 25.2 9.7 201 167-377 22-245 (268)
267 PRK13324 pantothenate kinase; 20.0 1E+02 0.0022 31.3 3.3 68 323-400 184-251 (258)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-130 Score=972.72 Aligned_cols=566 Identities=52% Similarity=0.849 Sum_probs=544.9
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
...|||||||||||||+++++|+++||.|.+|+|.+||+|+|+++ ++++|++|+++...||+||+++.||+||+.|+++
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~ 113 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDK 113 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCCh
Confidence 457999999999999999999999999999999999999999866 9999999999999999999999999999999999
Q ss_pred HHHHHhhcceeEEEECCCCCeEEE--eC---CeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVE--AN---GQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~--~~---~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
.+|++.++|||+++. .+++++|+ .+ .+.|+|+++++|+|.++++.|+.|+|.+++++|+||||||+++||++++
T Consensus 114 ~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 114 SVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 999999999999986 56666655 22 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCCC--eEEEEEeCCcceEEEEEEEeccccc----------------------
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKEG--LIAVFDLGGGTFDVSILEISNGVFE---------------------- 266 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~--~vlVvD~GggT~Dvsv~~~~~~~~~---------------------- 266 (651)
+|..+|||+++|+|+||+|||++|+++++++ ++||||+||||||||++.+++|+|+
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHH
Confidence 9999999999999999999999999998875 9999999999999999999999987
Q ss_pred -------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHH
Q 047849 267 -------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAP 339 (651)
Q Consensus 267 -------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~ 339 (651)
+++.|++++.+++.+|+++||+||+.||++.++.+.|+.++++ .||+-++||+.||++.-+++..++.+
T Consensus 273 fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG----~DfSEtLtRAkFEElNmDLFr~TlkP 348 (663)
T KOG0100|consen 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDG----VDFSETLTRAKFEELNMDLFRKTLKP 348 (663)
T ss_pred HHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeecccc----ccccchhhhhHHHHhhhHHHHHhhHH
Confidence 6789999999999999999999999999999999999999987 89999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-cCCCCCcCCccchheehhHHHhhhccCC--cceeEEEeccc
Q 047849 340 CKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTP 416 (651)
Q Consensus 340 i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-~~~~~~~~~p~~aVA~GAa~~a~~l~~~--~~~~~~~d~~~ 416 (651)
++++|+++++.+.+|+.|+|||||+|||.||++|+++| |+++.+.+||++|||+|||.+|..+|+. ..++++.|++|
T Consensus 349 v~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~p 428 (663)
T KOG0100|consen 349 VQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNP 428 (663)
T ss_pred HHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeecc
Confidence 99999999999999999999999999999999999999 8999999999999999999999999984 57899999999
Q ss_pred CccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEE
Q 047849 417 LSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTF 496 (651)
Q Consensus 417 ~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f 496 (651)
+++|||+.+|.|..+|||||.||+++++.|+|+.|+|..+.|++|+||+++..+|+.||.|.+.|+||+|+|.|+|+|+|
T Consensus 429 LtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtF 508 (663)
T KOG0100|consen 429 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 (663)
T ss_pred ccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh---h
Q 047849 497 DIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG---E 572 (651)
Q Consensus 497 ~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~---~ 572 (651)
++|.||+|+|+|.|+.||++.+++|++. ++||+++|++|++++++|+++|+..+++.++||+||+|.|.+++.+. +
T Consensus 509 evDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkek 588 (663)
T KOG0100|consen 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEK 588 (663)
T ss_pred EEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhH
Confidence 9999999999999999999999999986 78999999999999999999999999999999999999999999995 3
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 573 YREKIPSEVAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+...+++++++.+..++++..+||+.+. .++++++.++|..++.||.+++|+.+|
T Consensus 589 Lg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag 646 (663)
T KOG0100|consen 589 LGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAG 646 (663)
T ss_pred hcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 6688999999999999999999998874 899999999999999999999999776
No 2
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=7.9e-104 Score=888.98 Aligned_cols=569 Identities=64% Similarity=1.009 Sum_probs=535.3
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
..+||||||||||+||+++++.+++++|..|.+.+||+|+|. ++.++||..|+.+...+|.++++.+||+||+.++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~-~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEEC-CCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 359999999999999999999999999999999999999996 5678999999999999999999999999999999999
Q ss_pred HHHHhhcceeEEEECCCCCeEEE-eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
++...+.+||.++...++..++. .+++.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 99999999999998888887776 35788999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||++++||+||+|||++|+.+...+ ++||||+||||||+||+++.++.|+
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~ 265 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFR 265 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999876544 9999999999999999998877664
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+++.|+..+++++.+|+.+||++|+.||....+.+.++.+..+.+|..++.+.|||++|+++++|+++++..+++++|+
T Consensus 266 ~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~ 345 (657)
T PTZ00186 266 KTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMK 345 (657)
T ss_pred hhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999999999999999999887665555567899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++++.+|+.|+||||+||||.|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++||+++.+
T Consensus 346 ~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~~~ 425 (657)
T PTZ00186 346 DAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLG 425 (657)
T ss_pred HcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
|.|.+|||||++||+++++.|++..|||+.+.|+|||||+..+.+|..||+|+|.++||.|+|.++|+|+|++|.||+|+
T Consensus 426 g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~ 505 (657)
T PTZ00186 426 GVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICH 505 (657)
T ss_pred CEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.++.||++..+.|..+..||+++|++++++++++.++|+..+++.+++|++|.+++.+++.+++. ..+++++++.+
T Consensus 506 V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 584 (657)
T PTZ00186 506 VTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENV 584 (657)
T ss_pred EEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHH
Confidence 99999999999999999888899999999999999999999999999999999999999999999753 46899999999
Q ss_pred HHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 586 EDAVADLRKAMGADN--VDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~--~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
...++.+++||.+++ .+++++++++|++.+.++..++|++++
T Consensus 585 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 628 (657)
T PTZ00186 585 KTLVAELRKAMENPNVAKDDLAAATDKLQKAVMECGRTEYQQAA 628 (657)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999754 599999999999999999999987553
No 3
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.9e-103 Score=891.22 Aligned_cols=591 Identities=66% Similarity=1.030 Sum_probs=551.1
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++++|.++++.|..|+|.+||+|+|.+++++++|..|+.+...+|.++++++||+||+. ++.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~~ 80 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEEV 80 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chHH
Confidence 58999999999999999999999999999999999999997678999999999999999999999999999999 5678
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
+...+.+||.++..++|...+..+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++||
T Consensus 81 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 160 (627)
T PRK00290 81 QKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 160 (627)
T ss_pred HHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 88889999999998888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-----------------------------c
Q 047849 218 LDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-----------------------------D 267 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-----------------------------~ 267 (651)
|++++||+||+|||++|+.....+ ++|||||||||||+|++++.++.++ +
T Consensus 161 l~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~ 240 (627)
T PRK00290 161 LEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKE 240 (627)
T ss_pred CceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876433 9999999999999999998876653 3
Q ss_pred cCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047849 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA 347 (651)
Q Consensus 268 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a 347 (651)
++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..|+.++.+.|||++|+++|+|+++++..+|+++|+++
T Consensus 241 ~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a 320 (627)
T PRK00290 241 NGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDA 320 (627)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667778899999999999999999999999999988766544557899999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCCe
Q 047849 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGI 427 (651)
Q Consensus 348 ~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~~ 427 (651)
++++.+|+.|+||||+||+|+|++.|++.||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.+|.
T Consensus 321 ~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~~ 400 (627)
T PRK00290 321 GLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGV 400 (627)
T ss_pred CCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCCe
Confidence 99999999999999999999999999999998888999999999999999999999988999999999999999999999
Q ss_pred EEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEE
Q 047849 428 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507 (651)
Q Consensus 428 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 507 (651)
+.+|||+|+++|++++++|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|+
T Consensus 401 ~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~ 480 (627)
T PRK00290 401 MTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVS 480 (627)
T ss_pred EEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 047849 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIED 587 (651)
Q Consensus 508 ~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~ 587 (651)
+.+..+++...+++....+|++++++++++++.++.++|++.+++.+++|+||+|+|.+++.|+++.+.+++++++++.+
T Consensus 481 a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~ 560 (627)
T PRK00290 481 AKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEA 560 (627)
T ss_pred EEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999887789999999999999999999999999999999999999999999987778999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-CCCCCCCCCCCCCCchhhhhccC
Q 047849 588 AVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSG-G-GAASGGSQGGEQTPEAEYEEVKK 651 (651)
Q Consensus 588 ~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 651 (651)
.|+++++||+.++.+++++++++|++.+.++..++|++++ + +.++ ..++.++.+++||||||.
T Consensus 561 ~l~~~~~wL~~~~~~~i~~k~~~L~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 625 (627)
T PRK00290 561 AIKELKEALKGEDKEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAG-AAAKDDDVVDAEFEEVKD 625 (627)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-cCCCCCccccCceeecCC
Confidence 9999999999988999999999999999999999987433 1 1111 233346788999999983
No 4
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=5.2e-103 Score=889.53 Aligned_cols=571 Identities=58% Similarity=0.922 Sum_probs=536.7
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
.+..+||||||||||+||++.+|.+.+++|..|++++||+|+|..++++++|..|+.+...+|.++++++||+||+.+++
T Consensus 37 ~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 116 (673)
T PLN03184 37 VAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 116 (673)
T ss_pred cCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch
Confidence 34569999999999999999999999999999999999999997677899999999999999999999999999999875
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEE--eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDA 212 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~A 212 (651)
++...+.+||.++..+++.+.+. ..++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 117 --~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 --VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred --hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45667889999998888877765 45789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-------------------------
Q 047849 213 GRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE------------------------- 266 (651)
Q Consensus 213 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~------------------------- 266 (651)
|++|||+++++|+||+|||++|+.....+ ++|||||||||||+|++++.++.|+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999886554 9999999999999999998876654
Q ss_pred ----ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ----DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKN 342 (651)
Q Consensus 267 ----~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 342 (651)
.++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+.++..++.+.|||++|+++|+++++++..+|++
T Consensus 275 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~~ 354 (673)
T PLN03184 275 NFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVEN 354 (673)
T ss_pred HHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788999999999999999999999999998877654445568899999999999999999999999999
Q ss_pred HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCcccee
Q 047849 343 CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIE 422 (651)
Q Consensus 343 ~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~ 422 (651)
+|+++++++.+|+.|+||||+||||.|+++|++.||..+...+||++|||+|||++|+++++.++++.+.|++|++||++
T Consensus 355 ~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~slgi~ 434 (673)
T PLN03184 355 ALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLE 434 (673)
T ss_pred HHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccccceEE
Confidence 99999999999999999999999999999999999988888999999999999999999999888999999999999999
Q ss_pred ecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCe
Q 047849 423 TLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANG 502 (651)
Q Consensus 423 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G 502 (651)
+.++.+.+|||+|+++|++++++|++..|+|+.+.|+||||++.++.+|..||+|.|.++|++++|.++|+|+|++|.||
T Consensus 435 ~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~G 514 (673)
T PLN03184 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 514 (673)
T ss_pred ecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHH
Q 047849 503 IVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVA 582 (651)
Q Consensus 503 ~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~ 582 (651)
+|+|++.+..++++..+++.....||++++++++++++++.++|+..+++.+++|++|+|||.+++.|+++.++++++++
T Consensus 515 iL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer 594 (673)
T PLN03184 515 ILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK 594 (673)
T ss_pred eEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHH
Confidence 99999999999999999998877899999999999999999999999999999999999999999999878889999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 583 KEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 583 ~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+++.+.|+++++||++++.+++++++++|.+.+.++..++|+++|
T Consensus 595 ~~l~~~l~~~e~wL~~~d~~~ik~~~~~l~~~l~~l~~~~~~~~~ 639 (673)
T PLN03184 595 EKVEAKLKELKDAIASGSTQKMKDAMAALNQEVMQIGQSLYNQPG 639 (673)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998765
No 5
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=4.9e-103 Score=889.58 Aligned_cols=571 Identities=69% Similarity=1.063 Sum_probs=542.5
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
..+||||||||||+||++.++.+++++|..|+|.+||+|+|.+++++++|..|+.+..++|.++++++||+||+.++++.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 35999999999999999999999999999999999999999877899999999999999999999999999999999999
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
++...+.+||.++..+++...+..+++.|+|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 200 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIA 200 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 99999999999999888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-----------------------------
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----------------------------- 266 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----------------------------- 266 (651)
||+++++|+||+|||++|+.....+ ++|||||||||||+||+++.++.|+
T Consensus 201 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~ 280 (663)
T PTZ00400 201 GLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280 (663)
T ss_pred CCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999876554 9999999999999999998776554
Q ss_pred ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKD 346 (651)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~ 346 (651)
.++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..|..++.++|||++|+++|+|+++++.++++++|++
T Consensus 281 ~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~ 360 (663)
T PTZ00400 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKD 360 (663)
T ss_pred hcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999999999999988877665566789999999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCC
Q 047849 347 ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGG 426 (651)
Q Consensus 347 a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~ 426 (651)
+++.+.+|+.|+||||+||+|+|+++|++.||.++...+||+++||+|||++|+++++..+++.+.|++|++||+++.+|
T Consensus 361 a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~~g 440 (663)
T PTZ00400 361 AGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGG 440 (663)
T ss_pred cCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEecCC
Confidence 99999999999999999999999999999999888899999999999999999999998889999999999999999999
Q ss_pred eEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEE
Q 047849 427 IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTV 506 (651)
Q Consensus 427 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v 506 (651)
.|.+|||+|+++|++++++|++..|+|+.+.|+||||++.++.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 441 ~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v 520 (663)
T PTZ00400 441 VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNI 520 (663)
T ss_pred eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHH
Q 047849 507 SAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIE 586 (651)
Q Consensus 507 ~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~ 586 (651)
++.++.++++..++|....+||+++++++++++.++.++|++.+++.+++|++|+|+|.+++.|+++.+.+++++++++.
T Consensus 521 ~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~ 600 (663)
T PTZ00400 521 SAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELK 600 (663)
T ss_pred EEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHH
Confidence 99999999999999988788999999999999999999999999999999999999999999998788899999999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 587 DAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 587 ~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+.++++++||+.++.+++++++++|++.+.++..++|++++
T Consensus 601 ~~l~~~~~WL~~~d~~~i~~k~~eL~~~l~~l~~k~y~~~~ 641 (663)
T PTZ00400 601 QKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAYKQGN 641 (663)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999987554
No 6
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=6.8e-103 Score=889.18 Aligned_cols=590 Identities=49% Similarity=0.780 Sum_probs=542.4
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
....+||||||||||+||+++++.++++.|..|+|++||+|+|. ++++++|..|+.+..++|.++++++||+||+.+++
T Consensus 2 ~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~-~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 80 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDD 80 (653)
T ss_pred CcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEEC-CCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCc
Confidence 45569999999999999999999999999999999999999995 56899999999999999999999999999999999
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEE--e--CCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVE--A--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~--~--~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
+.++...+.+||.+....++...+. . ..+.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 160 (653)
T PTZ00009 81 SVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATK 160 (653)
T ss_pred hhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHH
Confidence 9999999999999988887766544 2 34789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCC---CeEEEEEeCCcceEEEEEEEeccccc---------------------
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKE---GLIAVFDLGGGTFDVSILEISNGVFE--------------------- 266 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~---~~vlVvD~GggT~Dvsv~~~~~~~~~--------------------- 266 (651)
+||++|||++++|++||+|||++|+..+.. .++|||||||||||+||+++.++.|+
T Consensus 161 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 161 DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 999999999999999999999999986532 38999999999999999998766554
Q ss_pred --------cc-CCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHH
Q 047849 267 --------DE-GIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTR 337 (651)
Q Consensus 267 --------~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~ 337 (651)
++ +.++..+++++.+|+.+||++|+.||.+.++.+.++.+.++ .++.++|||++|+++|+|+++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~ 316 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTL 316 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHH
Confidence 11 35666778999999999999999999999999999887665 689999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CCCCCcCCccchheehhHHHhhhccCC----cceeEEE
Q 047849 338 APCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAIQGGILRGD----VKELLLL 412 (651)
Q Consensus 338 ~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~l~~~----~~~~~~~ 412 (651)
.+|+++|+++++++.+|+.|+||||+||||.|+++|++.|+ ..+...+||++|||+|||++|+++++. ++++.+.
T Consensus 317 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~ 396 (653)
T PTZ00009 317 QPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLL 396 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEE
Confidence 99999999999999999999999999999999999999996 567889999999999999999999863 5789999
Q ss_pred ecccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCee
Q 047849 413 DVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQI 492 (651)
Q Consensus 413 d~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i 492 (651)
|++|++||++..+|.+.+|||+|+++|++++++|++..|+|+.+.|+||||++..+.+|..||+|.|.++|+.++|.++|
T Consensus 397 dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 476 (653)
T PTZ00009 397 DVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476 (653)
T ss_pred eecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047849 493 EVTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG 571 (651)
Q Consensus 493 ~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~ 571 (651)
+|+|++|.||+|+|++.++.++++..+++... ..|++++++++++++.++.++|+..+++.+++|+||+|||+++++|+
T Consensus 477 ~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~ 556 (653)
T PTZ00009 477 EVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQ 556 (653)
T ss_pred EEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999888754 67999999999999999999999999999999999999999999996
Q ss_pred h--cccCCCHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCCCCCCC-------
Q 047849 572 E--YREKIPSEVAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHMAGGSG---GGAASGGSQ------- 636 (651)
Q Consensus 572 ~--~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~~~~~~---~~~~~~~~~------- 636 (651)
+ +.+++++++++++.+.++++++||++++ .+++++++++|++.++++..|++++|| ||+++||.|
T Consensus 557 ~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (653)
T PTZ00009 557 DEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGA 636 (653)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCC
Confidence 3 7889999999999999999999999753 788999999999999999999998775 455555444
Q ss_pred ---CCCCCCchhhhhc
Q 047849 637 ---GGEQTPEAEYEEV 649 (651)
Q Consensus 637 ---~~~~~~~~~~~~~ 649 (651)
|+|...||++|||
T Consensus 637 ~~~~~~~~~~~~~~~~ 652 (653)
T PTZ00009 637 GPAGAGASSGPTVEEV 652 (653)
T ss_pred CCCCCCCCCCCccccC
Confidence 3456668999998
No 7
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-105 Score=823.54 Aligned_cols=574 Identities=71% Similarity=1.057 Sum_probs=557.6
Q ss_pred CCCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCC
Q 047849 54 PAGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFD 133 (651)
Q Consensus 54 ~~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~ 133 (651)
.....++|||+||||||++++.++++.++.|.+|.|.+||+|+|+.|+++++|..|+++...||.|+++..||+|||.++
T Consensus 24 ~~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~ 103 (640)
T KOG0102|consen 24 KVKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFD 103 (640)
T ss_pred CCCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhcc
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 134 DPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+++++.+.+..||++++..+|..|++..|+.++|.++.+++|.+++++|++|++..+..+|+||||||++.||+++++|.
T Consensus 104 d~evq~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 104 DPEVQKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred CHHHHHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc--------------------------
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-------------------------- 266 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------- 266 (651)
++||++++++++||+|||++|+++++.+ .++|||+||||||++++++.+++|+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 9999999999999999999999997765 9999999999999999999998887
Q ss_pred ---ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNC 343 (651)
Q Consensus 267 ---~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~ 343 (651)
..++|+..+..++.||++++|++|+.||+..+.++.++++..+..|+.++++++||.+||+++.++++|.++++.++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceee
Q 047849 344 LKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIET 423 (651)
Q Consensus 344 l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~ 423 (651)
|++|++...+|+.|+||||++|+|++++.+++.||+.+...+||+++||.|||++++.++++++++.+.|++|+++||++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCee
Q 047849 424 LGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGI 503 (651)
Q Consensus 424 ~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~ 503 (651)
.+|.|..|||+|+.||++++..|.++.|+|+.+.|.++|||++++.+|..+|+|.+.|+||.|+|.|+|+|+|.+|+||+
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHH
Q 047849 504 VTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAK 583 (651)
Q Consensus 504 l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~ 583 (651)
++|+|.|+.|+|..++++..+++||+++++.|+++++.+...|+.+++..+.+|..++++++.+..+.++.+.++.++..
T Consensus 504 ~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~ 583 (640)
T KOG0102|consen 504 GTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECE 583 (640)
T ss_pred eeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHH
Confidence 99999999999999999999989999999999999999999999999999999999999999999999899999999888
Q ss_pred HHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 047849 584 EIEDAVADLRKAMGA---DNVDDIKSKLDAANKAVSKIGQHMAGGSG 627 (651)
Q Consensus 584 ~~~~~l~~~~~wl~~---~~~~~~~~k~~~l~~~~~~i~~~~~~~~~ 627 (651)
+|...+.++.+.+.. .+.++++.+...|++...++++.+|..++
T Consensus 584 ~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~ 630 (640)
T KOG0102|consen 584 KLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMG 630 (640)
T ss_pred HHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 999999999888753 45899999999999999999999998655
No 8
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.3e-102 Score=881.53 Aligned_cols=569 Identities=60% Similarity=0.938 Sum_probs=535.0
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.+.++.|..|+|.+||+|+|.++++++||..|+.+...+|.++++++||+||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 5899999999999999999999999999999999999999777799999999999999999999999999999998764
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
...+.+||.++...++.+.+..+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++||
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AG 160 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAG 160 (653)
T ss_pred -HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHcC
Confidence 4567899999988888877888889999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccCC--CeEEEEEeCCcceEEEEEEEeccccc-----------------------------
Q 047849 218 LDVQRIINEPTAASLSYGMNNKE--GLIAVFDLGGGTFDVSILEISNGVFE----------------------------- 266 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~~--~~vlVvD~GggT~Dvsv~~~~~~~~~----------------------------- 266 (651)
|++++|++||+|||++|+..+.. .++|||||||||||+|++++.++.|+
T Consensus 161 l~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~ 240 (653)
T PRK13411 161 LEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQ 240 (653)
T ss_pred CCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987543 38999999999999999998876664
Q ss_pred ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKD 346 (651)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~ 346 (651)
.++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..++.++.+.|||++|+++++|+++++..+|+++|++
T Consensus 241 ~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 320 (653)
T PRK13411 241 QEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKD 320 (653)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999999999999999999999998876554455788999999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 347 ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 347 a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
+++.+.+|+.|+||||+||||+|++.|++.|+ ..+..++||++|||+|||++|+++++..+++.+.|++|++||+++.+
T Consensus 321 a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~~ 400 (653)
T PRK13411 321 AGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLG 400 (653)
T ss_pred cCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEecC
Confidence 99999999999999999999999999999996 67888999999999999999999998889999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
+.|.+|||||+++|++++++|++..|+|+.+.|+||||++..+.+|..||+|.|.++|++++|.++|+|+|++|.||+|+
T Consensus 401 ~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~ 480 (653)
T PRK13411 401 EVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILK 480 (653)
T ss_pred CceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.+..++++..+.+....+||++++++++++++++.++|+.++++.+++|++|+|+|.+++.|+++.+.+++++|+++
T Consensus 481 v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i 560 (653)
T PRK13411 481 VSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRA 560 (653)
T ss_pred EEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99999999999999988777899999999999999999999999999999999999999999999877889999999999
Q ss_pred HHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 047849 586 EDAVADLRKAMGADN--VDDIKSKLDAANKAVSKIGQHMAGGSGG 628 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~--~~~~~~k~~~l~~~~~~i~~~~~~~~~~ 628 (651)
.+.++++++||++++ .+++++++++|++.+.+++.++|+++|+
T Consensus 561 ~~~l~~~~~wL~~~~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 561 EQKVEQLEAALTDPNISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999864 8999999999999999999999987663
No 9
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.4e-101 Score=874.83 Aligned_cols=565 Identities=53% Similarity=0.873 Sum_probs=529.6
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.+.+|.|..|+++|||+|+|.+++++++|..|+.+...+|.++++.+||+||+++++ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 58999999999999999999999999999999999999997778999999999999999999999999999999865 5
Q ss_pred HHHhhcceeEEEECCCCCeEEEe--CCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEA--NGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~--~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
+...+.+||.+..+++|.+.+.. .++.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||++|++||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 160 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRI 160 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 56678899999988888877663 5688999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||+++++|+||+|||++|+..+..+ ++||||+||||||+|++++.++.|+
T Consensus 161 AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999886554 9999999999999999998877654
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+.++..++...|||++|+++|+++++++..+|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666788899999999999999999999999999888765555678899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++++.+|+.|+||||+||||+|+++|+++||.++...+||++|||+|||++|+++++.++++.+.|++|++||+++.+
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~~ 400 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIG 400 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999889999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
|.+.+|||+|++||++++.+|++..|||+.+.|+||||++..+.+|..||+|.|.++|++++|.++|+|+|++|.||+|+
T Consensus 401 g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~ 480 (668)
T PRK13410 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480 (668)
T ss_pred CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh----cccCCCHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGE----YREKIPSEV 581 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~----~~~~~~~~~ 581 (651)
|++.++.||++..++|....+||+++++++++++.++.++|+..+++.+++|++|+|+|.+++.|.+ +..++++++
T Consensus 481 V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~ 560 (668)
T PRK13410 481 VSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQ 560 (668)
T ss_pred EEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHH
Confidence 9999999999999999877889999999999999999999999999999999999999999999963 568899999
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 582 AKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 582 ~~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
|+++...++++++||+.++.+++++++++|.+.+.++..+++.
T Consensus 561 ~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 603 (668)
T PRK13410 561 RRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRA 603 (668)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999889999998888888888866643
No 10
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=9e-99 Score=852.93 Aligned_cols=563 Identities=66% Similarity=1.021 Sum_probs=530.5
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
+||||||||||+||++++|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.++ .++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HHH
Confidence 799999999999999999999999999999999999999877799999999999999999999999999999984 477
Q ss_pred HHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCC
Q 047849 139 KEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGL 218 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl 218 (651)
...+.+||. +..++|...+..+++.++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||++|||
T Consensus 80 ~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 158 (595)
T TIGR02350 80 EEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGL 158 (595)
T ss_pred HHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 778899999 5567788888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecchHHHhhhhcccc-CC-CeEEEEEeCCcceEEEEEEEeccccc-----------------------------c
Q 047849 219 DVQRIINEPTAASLSYGMNN-KE-GLIAVFDLGGGTFDVSILEISNGVFE-----------------------------D 267 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~~-~~-~~vlVvD~GggT~Dvsv~~~~~~~~~-----------------------------~ 267 (651)
+++++|+||+|||++|+..+ .. .++|||||||||||+|++++.++.++ +
T Consensus 159 ~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~ 238 (595)
T TIGR02350 159 EVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKE 238 (595)
T ss_pred ceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999875 33 39999999999999999998776553 3
Q ss_pred cCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 047849 268 EGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA 347 (651)
Q Consensus 268 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a 347 (651)
++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..|+.++.+.|||++|+++++|+++++.++++++|+++
T Consensus 239 ~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a 318 (595)
T TIGR02350 239 EGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDA 318 (595)
T ss_pred hCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45566778889999999999999999999999999888766555557889999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCCe
Q 047849 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGI 427 (651)
Q Consensus 348 ~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~~ 427 (651)
++++.+|+.|+||||+||+|+|++.|++.||.++..++||++|||+|||++|+.+++.++++.+.|++|++||+++.+|.
T Consensus 319 ~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~~ 398 (595)
T TIGR02350 319 GLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGV 398 (595)
T ss_pred CCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCCc
Confidence 99999999999999999999999999999998888999999999999999999999988999999999999999999999
Q ss_pred EEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEE
Q 047849 428 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507 (651)
Q Consensus 428 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 507 (651)
+.+|||+|+++|++++++|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|+
T Consensus 399 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 478 (595)
T TIGR02350 399 MTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVS 478 (595)
T ss_pred eEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 047849 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIED 587 (651)
Q Consensus 508 ~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~ 587 (651)
+.+..++++..+++....+||+++++++++++.++.++|+..+++.+++|+||+|||.+++.|+++.+.+++++++++.+
T Consensus 479 ~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~ 558 (595)
T TIGR02350 479 AKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEK 558 (595)
T ss_pred EEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 99999999999999887889999999999999999999999999999999999999999999976778899999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 588 AVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 588 ~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
.++++++||+.++.+++++++++|++.+.+++.++|+
T Consensus 559 ~l~~~~~wL~~~d~~~i~~~~~~l~~~~~~~~~~~~~ 595 (595)
T TIGR02350 559 AVAELKEALKGEDVEEIKAKTEELQQALQKLAEAMYQ 595 (595)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999988764
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.6e-98 Score=850.79 Aligned_cols=565 Identities=62% Similarity=0.956 Sum_probs=531.2
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
.+||||||||||+||++.+|.+.+++|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+.+++ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 58999999999999999999999999999999999999997777899999999999999999999999999999864 5
Q ss_pred HHHhhcceeEEEECCCCCeEEE--eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVE--ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~--~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
+...+.+||.+...++|.+.+. ..+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||++
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 160 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKI 160 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 5666789999998887877665 45788999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||+++++|+||+|||++|+.....+ ++|||||||||||+|++++.++.|+
T Consensus 161 AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~ 240 (621)
T CHL00094 161 AGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFK 240 (621)
T ss_pred cCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876554 9999999999999999998876654
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+++.++..+++++.+|+.+||++|+.||...++.+.++.+..+..|+.++...|||++|+++++++++++..+|+++|+
T Consensus 241 ~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 320 (621)
T CHL00094 241 KKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALK 320 (621)
T ss_pred HHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788899999999999999999999999988877654445567899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++.+.+|+.|+||||+||||.|++.|++.||.++...+||++|||+|||++|+.+++..+++.+.|++|++||+++.+
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~~ 400 (621)
T CHL00094 321 DAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLG 400 (621)
T ss_pred HcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeeccC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
|.+.+|||+|+++|++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+
T Consensus 401 ~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~ 480 (621)
T CHL00094 401 GVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILS 480 (621)
T ss_pred CEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.++.|+++..+.+....+|++++++++++++.++.++|+..+++.+++|++|+|+|.+++.|+++.+.+++++|+++
T Consensus 481 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~ 560 (621)
T CHL00094 481 VTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKI 560 (621)
T ss_pred EEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 99999999999999988777899999999999999999999999999999999999999999999877788999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 586 EDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
.+.++++++||+.++.+++++++++|++.+.+++.++|+
T Consensus 561 ~~~l~~~~~wl~~~~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 561 ENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987
No 12
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-100 Score=819.10 Aligned_cols=566 Identities=49% Similarity=0.788 Sum_probs=537.4
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
..+.+|||||||||||++++.++.++++.|..|+|.+||+|+|.+ .++++|..|+.+...||.++++.+||++|+.+++
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~-~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d 83 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTD-TERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDD 83 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecc-cccchhhhhhhhhhcCCcceeeehhhhcCccccc
Confidence 345689999999999999999999999999999999999999964 5899999999999999999999999999999999
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEE----eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~----~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
+.++.+.+.|||.+.....+.+.+. ...+.|+|+++++++|.++++.|+.++|..+.++|+|||+||++.||+++.
T Consensus 84 ~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~ 163 (620)
T KOG0101|consen 84 PEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATK 163 (620)
T ss_pred hhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHH
Confidence 9999999999999986666666655 334789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCC--C-eEEEEEeCCcceEEEEEEEeccccc---------------------
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKE--G-LIAVFDLGGGTFDVSILEISNGVFE--------------------- 266 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~--~-~vlVvD~GggT~Dvsv~~~~~~~~~--------------------- 266 (651)
+|+.+|||+++++|+||+|||++|+++++. . +|||+|+||||||+|++.+.+|.|.
T Consensus 164 ~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 164 DAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 999999999999999999999999988752 2 9999999999999999999987544
Q ss_pred --------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHH
Q 047849 267 --------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRA 338 (651)
Q Consensus 267 --------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~ 338 (651)
+++.++..+++++.+|+.+||.+|+.||+...+.+.+++++++ .++...|||.+|+.++.+++.++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g----~d~~~~itrarfe~l~~dlf~~~~~ 319 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRSTLE 319 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcc----ccccceeehhhhhhhhhHHHHHHHH
Confidence 6678889999999999999999999999999999999999887 7899999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-cCCCCCcCCccchheehhHHHhhhccC----CcceeEEEe
Q 047849 339 PCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVNPDEAVALGAAIQGGILRG----DVKELLLLD 413 (651)
Q Consensus 339 ~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-~~~~~~~~~p~~aVA~GAa~~a~~l~~----~~~~~~~~d 413 (651)
++.++|+++++++.+|+.|+||||++++|.+|..++++| ++.+..++|||++||+|||++|+.+++ ...++.++|
T Consensus 320 ~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid 399 (620)
T KOG0101|consen 320 PVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLID 399 (620)
T ss_pred HHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeee
Confidence 999999999999999999999999999999999999999 577889999999999999999999987 357899999
Q ss_pred cccCccceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeE
Q 047849 414 VTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIE 493 (651)
Q Consensus 414 ~~~~sigi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~ 493 (651)
+.|+++||++.+|.|.++|++||.+|++++++|+++.|||+.+.|.|||||+.+.++|..+|.|+|.|+||+|+|+++|+
T Consensus 400 ~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~Ie 479 (620)
T KOG0101|consen 400 VAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 479 (620)
T ss_pred cccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCeeEEEEEEecCCCceeeEEecCC-CCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047849 494 VTFDIDANGIVTVSAKDKATGKEQQITIRSS-GGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGE 572 (651)
Q Consensus 494 v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~ 572 (651)
++|.+|.+|+|+|++.|+.|||...++|.+. +.||.++|++|..+++.+..+|...+.+.+++|.||+|+|+++..+++
T Consensus 480 vtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~ 559 (620)
T KOG0101|consen 480 VTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVED 559 (620)
T ss_pred EEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999885 789999999999999999999999999999999999999999999987
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHhcC
Q 047849 573 YREKIPSEVAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHMAGG 625 (651)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~~~~ 625 (651)
..+.++++++.++.+.++++.+||+.++ .+++++|.++|+..|.|+++++|++
T Consensus 560 ~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 560 EKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 6689999999999999999999999875 8999999999999999999999996
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=9.6e-98 Score=839.18 Aligned_cols=558 Identities=42% Similarity=0.690 Sum_probs=522.0
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
+||||||||||+||++.+|.++++.|..|++.+||+|+|.++++++||..|+.+...+|.++++.+||+||+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999877799999999999999999999999999999987643
Q ss_pred HHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCC
Q 047849 139 KEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGL 218 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl 218 (651)
. .+.+||.+...++|.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++|||
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2 577899998888888888766678999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-------------------------ccCCCC
Q 047849 219 DVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-------------------------DEGIDL 272 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------~~~~~~ 272 (651)
+++++++||+|||++|+.....+ ++||||+||||||+|++++.++.|+ +++.+.
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~ 237 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISA 237 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999876544 9999999999999999998876654 334555
Q ss_pred ccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q 047849 273 SKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTK 352 (651)
Q Consensus 273 ~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~ 352 (651)
..++..+.+|+.+||++|+.||....+.+.++. ++ .++.++|||++|+++++|+++++.++|+++|+++++.+.
T Consensus 238 ~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g----~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~ 311 (599)
T TIGR01991 238 DLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DG----KDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVE 311 (599)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CC----cEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 567888999999999999999999988888764 22 678999999999999999999999999999999999999
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCC--cceeEEEecccCccceeecCCeEEE
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETLGGIFTR 430 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~--~~~~~~~d~~~~sigi~~~~~~~~~ 430 (651)
+|+.|+||||+||||+|+++|++.|+..+..++||++|||.|||++|+.+++. .+++.+.|++|++||+++.+|.+.+
T Consensus 312 ~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g~~~~ 391 (599)
T TIGR01991 312 EIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEK 391 (599)
T ss_pred hCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCCEEEE
Confidence 99999999999999999999999999888889999999999999999999874 3589999999999999999999999
Q ss_pred EEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEEEEe
Q 047849 431 LINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSAKD 510 (651)
Q Consensus 431 ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~ 510 (651)
|||||+++|+++++.|++..|+|+.+.|+||||++..+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+
T Consensus 392 ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~ 471 (599)
T TIGR01991 392 IIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQE 471 (599)
T ss_pred EEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 047849 511 KATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVA 590 (651)
Q Consensus 511 ~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~ 590 (651)
+.||++..+.|.....|++++++++++++.++..+|+..++..+++|++|+++|.+++.+.++...+++++|+++...++
T Consensus 472 ~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 551 (599)
T TIGR01991 472 QSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAAME 551 (599)
T ss_pred CCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 99999999999887789999999999999999999999999999999999999999999976667899999999999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q 047849 591 DLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGG 625 (651)
Q Consensus 591 ~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~ 625 (651)
++++||++++.++++++.++|++.+.+++.+.++.
T Consensus 552 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 586 (599)
T TIGR01991 552 ALQKALQGDDADAIKAAIEALEEATDNFAARRMDR 586 (599)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999877764
No 14
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.7e-96 Score=830.59 Aligned_cols=558 Identities=41% Similarity=0.683 Sum_probs=517.8
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
...+||||||||||+||++.+|.+++++|..|++.+||+|+|.++ .++||..|+.+...+|.++++.+||+||+.+++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 95 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLAD- 95 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh-
Confidence 346899999999999999999999999999999999999999755 599999999999999999999999999999875
Q ss_pred HHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
++.....+||.+....+|.+.+...+..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||++
T Consensus 96 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 174 (616)
T PRK05183 96 -IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARL 174 (616)
T ss_pred -hhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 4455678899998877888888766678999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc-------------------------ccC
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE-------------------------DEG 269 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------~~~ 269 (651)
|||+++++|+||+|||++|+.+...+ ++||||+||||||+|++++.++.|+ +.+
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999876544 9999999999999999998877654 334
Q ss_pred CCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 047849 270 IDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANI 349 (651)
Q Consensus 270 ~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~ 349 (651)
.+...++..+.+|+.+||++|+.||....+.+.+..+ ...|||++|+++++|+++++..+++++|+++++
T Consensus 255 ~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~ 324 (616)
T PRK05183 255 LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQFNALIAPLVKRTLLACRRALRDAGV 324 (616)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4455678889999999999999999998888877421 224999999999999999999999999999999
Q ss_pred CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCC--cceeEEEecccCccceeecCCe
Q 047849 350 TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGD--VKELLLLDVTPLSLGIETLGGI 427 (651)
Q Consensus 350 ~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~--~~~~~~~d~~~~sigi~~~~~~ 427 (651)
.+.+|+.|+||||+||||+|++.|+++||..+..++||++|||+|||++|+.+++. .+++.+.|++|++||+++.+|.
T Consensus 325 ~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g~ 404 (616)
T PRK05183 325 EADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGL 404 (616)
T ss_pred CcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccceecCCe
Confidence 99999999999999999999999999999888889999999999999999999875 4689999999999999999999
Q ss_pred EEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEE
Q 047849 428 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVS 507 (651)
Q Consensus 428 ~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~ 507 (651)
+.+|||+|+++|+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|+
T Consensus 405 ~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~ 484 (616)
T PRK05183 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVT 484 (616)
T ss_pred EEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHH
Q 047849 508 AKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIED 587 (651)
Q Consensus 508 ~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~ 587 (651)
+.++.+|++..+.|.+..+||++++++++++++++..+|+..+++.+++|++|.++|.+++.+.+..+.+++++|+++.+
T Consensus 485 a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 564 (616)
T PRK05183 485 AMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDA 564 (616)
T ss_pred EEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 99999999999999877789999999999999999999999999999999999999999999976667899999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 047849 588 AVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAGGS 626 (651)
Q Consensus 588 ~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~~~ 626 (651)
.++++++||++++.+++++++++|++.+.++..+.++.+
T Consensus 565 ~l~~~~~~l~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~ 603 (616)
T PRK05183 565 AMAALREVAQGDDADAIEAAIKALDKATQEFAARRMDRS 603 (616)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998877643
No 15
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.1e-92 Score=790.24 Aligned_cols=533 Identities=35% Similarity=0.545 Sum_probs=472.8
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh-
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP- 135 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~- 135 (651)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|.+ +.++||..| +++++||++|+.+++.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~-~~~~vG~~A----------ti~~~KrliG~~~~~~~ 87 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTS-NNFTIGNNK----------GLRSIKRLFGKTLKEIL 87 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcC-CCEEECchh----------hHHHHHHHhCCCchhhc
Confidence 3589999999999999999999999999999999999999964 469999987 7999999999998752
Q ss_pred ---HHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHH
Q 047849 136 ---QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDA 212 (651)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~A 212 (651)
.+....+. ......+...+..+++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 88 ~~~~~~~~~k~----~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~A 163 (595)
T PRK01433 88 NTPALFSLVKD----YLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLA 163 (595)
T ss_pred cchhhHhhhhh----eeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 22221111 12223334456677889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc---------ccCCCC----------
Q 047849 213 GRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------DEGIDL---------- 272 (651)
Q Consensus 213 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------~~~~~~---------- 272 (651)
|++|||+++++++||+|||++|+.+.... ++||||+||||||+|++++.++.|+ ..|.|+
T Consensus 164 a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~ 243 (595)
T PRK01433 164 AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCN 243 (595)
T ss_pred HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHH
Confidence 99999999999999999999999876544 8999999999999999999887766 111221
Q ss_pred ----ccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047849 273 ----SKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDAN 348 (651)
Q Consensus 273 ----~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~ 348 (651)
..+. +.+..||++|+.||......+ ..++|||++|+++++|+++++..+++++|++++
T Consensus 244 ~~~~~~~~----~~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~ 305 (595)
T PRK01433 244 KFDLPNSI----DTLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQECLEQAG 305 (595)
T ss_pred hcCCCCCH----HHHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1111 234469999999998764211 268999999999999999999999999999998
Q ss_pred CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecCCeE
Q 047849 349 ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIF 428 (651)
Q Consensus 349 ~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~~~~ 428 (651)
+.+|+.|+||||+||||+|+++|++.||.++..+.||++|||+|||++|+.+++...++.+.|++|++||+++.+|.+
T Consensus 306 --~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~~~~g~~ 383 (595)
T PRK01433 306 --NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIV 383 (595)
T ss_pred --cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEEecCCEE
Confidence 578999999999999999999999999988888999999999999999999988778899999999999999999999
Q ss_pred EEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEEEEE
Q 047849 429 TRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVTVSA 508 (651)
Q Consensus 429 ~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~v~~ 508 (651)
.+|||||++||+++++.|++..|+|+.+.|+|||||+..+.+|..||+|.|.++|+.|+|.++|+|+|++|.||+|+|++
T Consensus 384 ~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a 463 (595)
T PRK01433 384 EKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSA 463 (595)
T ss_pred EEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 047849 509 KDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDA 588 (651)
Q Consensus 509 ~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 588 (651)
.++.||++..+.|..+..||++|+++++++++++.++|..+++..+++|++|++++.+++.++++.+.+++++|+++...
T Consensus 464 ~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 543 (595)
T PRK01433 464 YEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSL 543 (595)
T ss_pred EEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 99999999999998777899999999999999999999999999999999999999999999877778999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHH--------HHHHHhc
Q 047849 589 VADLRKAMGADNVDDIKSKLDAANKAVSK--------IGQHMAG 624 (651)
Q Consensus 589 l~~~~~wl~~~~~~~~~~k~~~l~~~~~~--------i~~~~~~ 624 (651)
++++++||+.++...+++++++|++.+.+ ++.++|+
T Consensus 544 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 587 (595)
T PRK01433 544 LDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLLK 587 (595)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 99999999988877777666666655555 5555555
No 16
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-90 Score=767.95 Aligned_cols=543 Identities=62% Similarity=0.921 Sum_probs=513.1
Q ss_pred CcEEEEEcCCceEEEEEEeCC-ceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCCh
Q 047849 57 NDIIGIDLGTTNSCVALMEGK-NPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDP 135 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~-~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~ 135 (651)
..+|||||||||||||+++++ .+.++.|..|.|.+||+|+|.+++++++|..|+.+...+|.++++.+||++|+...
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 458999999999999999988 79999999999999999999877789999999999999999999999999998721
Q ss_pred HHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 047849 136 QTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRI 215 (651)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~ 215 (651)
.....+..+++.++|+++++++|++|++.|+.+++..++++||||||||++.||+++++|+++
T Consensus 83 -----------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~i 145 (579)
T COG0443 83 -----------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARI 145 (579)
T ss_pred -----------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 011235566789999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----------------------------
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE---------------------------- 266 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~---------------------------- 266 (651)
|||+++++++||+|||++|+.+...+ +|||||+||||||+|++++.++.|+
T Consensus 146 aGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~ 225 (579)
T COG0443 146 AGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFK 225 (579)
T ss_pred cCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhh
Confidence 99999999999999999999998765 9999999999999999999877665
Q ss_pred -ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 267 -DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 267 -~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
++++++..++..+.+|+.+||++|+.||+..++.+.++++..+ .++..+|||++||+++.+++.++..++.++|.
T Consensus 226 ~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~al~ 301 (579)
T COG0443 226 GKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQALK 301 (579)
T ss_pred ccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888999999999999999999999999999999877655 67889999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEEecccCccceeecC
Q 047849 346 DANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLLDVTPLSLGIETLG 425 (651)
Q Consensus 346 ~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~d~~~~sigi~~~~ 425 (651)
++++++.+|+.|+||||++|||.|++.++++|++++...+||+++||.|||++|+.+++...++.+.|++|+++|+++.+
T Consensus 302 ~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~~~ 381 (579)
T COG0443 302 DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLG 381 (579)
T ss_pred HcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeeccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999877999999999999999999
Q ss_pred CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCCeeEE
Q 047849 426 GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDANGIVT 505 (651)
Q Consensus 426 ~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~G~l~ 505 (651)
+.+..+|++|+.+|.++...|.+..|+|..+.+++++|++....+|..+|.|.+.++||.++|.++|+|+|.+|.||+++
T Consensus 382 ~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~ 461 (579)
T COG0443 382 GVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILN 461 (579)
T ss_pred chhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHH
Q 047849 506 VSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEI 585 (651)
Q Consensus 506 v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~ 585 (651)
|++.++.+|++..+.|..+.+|++++++.|.+.++.+.+.|++.++..+.+|.++.+++.++..|.+.. .+++++++++
T Consensus 462 v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~ 540 (579)
T COG0443 462 VTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKI 540 (579)
T ss_pred eeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHHH
Confidence 999999999999999998766999999999999999999999999999999999999999999998766 8999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 586 EDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 586 ~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
...+.++++||+++ .++++.+.++|+....++.++.|+
T Consensus 541 ~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 541 EEAITDLEEALEGE-KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999985 889999999999999999988775
No 17
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.8e-88 Score=772.52 Aligned_cols=562 Identities=47% Similarity=0.773 Sum_probs=505.4
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
|||||||||||+||++.++.++++.|..|+|++||+|+|.+ +++++|..|...+.++|.++++++||+||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~-~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSD-NERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEES-SCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEee-ecccCCcchhhhcccccccccccccccccccccccccc
Confidence 69999999999999999999999999999999999999965 48999999999999999999999999999999999999
Q ss_pred HHhhcceeEEEECCCCCeEEE--eCC--eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHH
Q 047849 139 KEMQMVSYKIVRAPNGDAWVE--ANG--QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGR 214 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~--~~~--~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~ 214 (651)
...+.+||.+..+++|...+. ..+ +.++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 999999999999888887765 334 4899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEeecchHHHhhhhccccCC-C-eEEEEEeCCcceEEEEEEEeccccc--------------------------
Q 047849 215 IAGLDVQRIINEPTAASLSYGMNNKE-G-LIAVFDLGGGTFDVSILEISNGVFE-------------------------- 266 (651)
Q Consensus 215 ~AGl~~~~li~Ep~AAAl~y~~~~~~-~-~vlVvD~GggT~Dvsv~~~~~~~~~-------------------------- 266 (651)
.|||++++||+||+|||++|+..+.. + ++|||||||||+|+|++++.++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999887655 3 9999999999999999998877654
Q ss_pred ---ccCCCCccCHHHHHHHHHHHHHhhhhcCC--CceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHH
Q 047849 267 ---DEGIDLSKDRLALQRLREAAEKAKIELSS--TTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCK 341 (651)
Q Consensus 267 ---~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 341 (651)
.++.++..+++.+.+|+.+||++|+.||. ..+..+.++.+.++ | .++.+.|||++|+++++|+++++..+++
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~--~-~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDD--G-EDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETT--T-EEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--c-cccccccccceecccccccccccccccc
Confidence 44667778899999999999999999999 56667777766652 1 7899999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC--CcceeEEEecccCcc
Q 047849 342 NCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDVTPLSL 419 (651)
Q Consensus 342 ~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~--~~~~~~~~d~~~~si 419 (651)
++|++++++..+|+.|+||||+||+|+|++.|++.|+..+..++||++|||+|||++|+.+++ ..+++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999987888999999999999999999887 567899999999999
Q ss_pred ceeecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEc
Q 047849 420 GIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDID 499 (651)
Q Consensus 420 gi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d 499 (651)
||+..+|.+.+++++|+++|+..+..|.+..++|+.+.|.||+|+.....+|..||++.|.++++.+.|.++|+|+|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCeeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCH
Q 047849 500 ANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPS 579 (651)
Q Consensus 500 ~~G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~ 579 (651)
.+|+|+|++.+..+++...+.+.....+++++++++.++++++...|+.+++..+++|++|+++|++++.+++..+.+++
T Consensus 477 ~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~ 556 (602)
T PF00012_consen 477 ENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFVSE 556 (602)
T ss_dssp TTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTH
T ss_pred eeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccCCH
Confidence 99999999999999999989888876699999999999999999999999999999999999999999999866778888
Q ss_pred HHH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 580 EVA-KEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 580 ~~~-~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
+++ +++++..+++.+|.+..+.+++++++++|++..+++..|+||
T Consensus 557 ~~~~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 557 EEKKKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 776 555555555555555556999999999999999999999875
No 18
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-78 Score=641.28 Aligned_cols=548 Identities=30% Similarity=0.525 Sum_probs=495.5
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHHH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQTQ 138 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~~ 138 (651)
++|||||..+|.+|+.+.+++++|.|..++|.||++|+|. ...|++|.+|+.+..+|+.|++..+||++|+.|+||.+|
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg-~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFG-PKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeec-cccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 8999999999999999999999999999999999999995 568999999999999999999999999999999999999
Q ss_pred HHhhcceeEEEECCCCCeEEE----eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHH
Q 047849 139 KEMQMVSYKIVRAPNGDAWVE----ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGR 214 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~g~~~v~----~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~ 214 (651)
.+.+.+|+.++..++|.+.+. ...+.|+|++|++|+|.+|+..|++.+..++.+|||+||+||++.||+++.+||+
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 999999999999999988766 4557899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEeecchHHHhhhhccccCC--------CeEEEEEeCCcceEEEEEEEeccccc--------------------
Q 047849 215 IAGLDVQRIINEPTAASLSYGMNNKE--------GLIAVFDLGGGTFDVSILEISNGVFE-------------------- 266 (651)
Q Consensus 215 ~AGl~~~~li~Ep~AAAl~y~~~~~~--------~~vlVvD~GggT~Dvsv~~~~~~~~~-------------------- 266 (651)
+|||+++++++|.+|+|++|++.+.+ .+|+++|+|++++.+|++.+..|.+.
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~ 241 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALI 241 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHH
Confidence 99999999999999999999998642 28999999999999999988766433
Q ss_pred ---------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHH
Q 047849 267 ---------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTR 337 (651)
Q Consensus 267 ---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~ 337 (651)
++++|...+++++.||+.+||+.|+.||++.....+|++++++ .|.+-.|+|++||+++.|+++|+.
T Consensus 242 ~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d----~dvs~~i~ReEfEel~~plL~rv~ 317 (727)
T KOG0103|consen 242 DHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMND----KDVSSKIKREEFEELSAPLLERVE 317 (727)
T ss_pred HHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeec----chhhhhccHHHHHHHHHHHHHhhh
Confidence 7788889999999999999999999999999999999999998 788999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC--CcceeEEEecc
Q 047849 338 APCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG--DVKELLLLDVT 415 (651)
Q Consensus 338 ~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~--~~~~~~~~d~~ 415 (651)
.++.++|++++++..+|+.|.+|||+||||.|+++|+++||++..+++|.++|||+|||+++|++|+ +++++.+.|+.
T Consensus 318 ~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~ 397 (727)
T KOG0103|consen 318 VPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIV 397 (727)
T ss_pred HHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 77899999999
Q ss_pred cCccceeec----C-CeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecC-ccccccCcceeEEEEeCCCCCCCC-
Q 047849 416 PLSLGIETL----G-GIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGE-REMASDNKSLGEFELVGIPPAPRG- 488 (651)
Q Consensus 416 ~~sigi~~~----~-~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge-~~~~~~n~~lg~~~l~~~~~~~~g- 488 (651)
||++.+.+. + +....+||+|.++|.++..+|.... .|.+.++++. ..++.....|+++.+.++.+...|
T Consensus 398 pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge 473 (727)
T KOG0103|consen 398 PYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGE 473 (727)
T ss_pred ceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCcccc
Confidence 999998864 2 5557899999999999999998875 4777777765 455656678999999999888774
Q ss_pred CCeeEEEEEEcCCeeEEEEEEe----------------------------cCCC----ceeeEEecC--CCCCCHHHHHH
Q 047849 489 MPQIEVTFDIDANGIVTVSAKD----------------------------KATG----KEQQITIRS--SGGLSEDEIEK 534 (651)
Q Consensus 489 ~~~i~v~f~~d~~G~l~v~~~~----------------------------~~t~----~~~~~~i~~--~~~ls~~~i~~ 534 (651)
..+++|..+++.+|+++|...- ...+ +...+.+.. .++|+..+++.
T Consensus 474 ~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~ 553 (727)
T KOG0103|consen 474 FSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELEL 553 (727)
T ss_pred ccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHH
Confidence 6789999999999999987320 0011 122333433 35799999999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh-hcccCCCHHHHHHHHHHHHHHHHHhccCC----HHHHHHHHH
Q 047849 535 MVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG-EYREKIPSEVAKEIEDAVADLRKAMGADN----VDDIKSKLD 609 (651)
Q Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~~~~~~k~~ 609 (651)
.++++.+|..+|+...++.+++|.||+|+|++|++|. .|.+++++++++++...|+++++|||.++ ...|..|+.
T Consensus 554 ~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~ 633 (727)
T KOG0103|consen 554 YIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLE 633 (727)
T ss_pred HHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 9999999999999999999999999999999999996 68899999999999999999999999875 566777777
Q ss_pred HHHHHH
Q 047849 610 AANKAV 615 (651)
Q Consensus 610 ~l~~~~ 615 (651)
+|+...
T Consensus 634 elk~~g 639 (727)
T KOG0103|consen 634 ELKKLG 639 (727)
T ss_pred HHHhhh
Confidence 777655
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-70 Score=579.68 Aligned_cols=560 Identities=28% Similarity=0.445 Sum_probs=477.7
Q ss_pred ccCCCCCCcEEEEEcCCceEEEEEEeCCceE-EEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhh
Q 047849 50 FSSKPAGNDIIGIDLGTTNSCVALMEGKNPK-VIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLI 128 (651)
Q Consensus 50 ~~~~~~~~~vvGID~GTt~s~va~~~~~~~~-ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~l 128 (651)
|.+......|++||+||.+++||++++|.|. |+.|..++|++|++|+| ++|+|++|.+|.....++|.+++..++.++
T Consensus 15 ~~~~~~~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vaf-k~~eR~fg~~A~~ma~r~P~~~~~~l~~ll 93 (902)
T KOG0104|consen 15 FVALSSALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAF-KGGERIFGEAAASMATRFPQSTYRQLKDLL 93 (902)
T ss_pred HhcccchhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEe-cCCceehhhhhhhhhhcCcHHHHHHHHHHh
Confidence 3334455679999999999999999999875 89999999999999999 688999999999999999999999999999
Q ss_pred CCCCCChHHHHHhhccee-EEEECC-CCCeEEEeCC-eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH
Q 047849 129 GRKFDDPQTQKEMQMVSY-KIVRAP-NGDAWVEANG-QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 129 g~~~~~~~~~~~~~~~~~-~~~~~~-~g~~~v~~~~-~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q 205 (651)
|+...++.++.+.+.+|| .++.++ .+.+.+..++ ..|++|++++|+|.+.+..|+.+...+|+++|||||.||++.|
T Consensus 94 gk~~~~~~v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qae 173 (902)
T KOG0104|consen 94 GKSLDDPTVDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAE 173 (902)
T ss_pred CcccCCcHHHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHH
Confidence 999999999998888775 566665 4455567666 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhhccccCC-----C-eEEEEEeCCcceEEEEEEEec------c----------
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE-----G-LIAVFDLGGGTFDVSILEISN------G---------- 263 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~-----~-~vlVvD~GggT~Dvsv~~~~~------~---------- 263 (651)
|+++.+||++||++++.||+|.+|||+.|+..+.. . +++|||||+|++.++++.+.- +
T Consensus 174 R~all~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~g 253 (902)
T KOG0104|consen 174 RRALLQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLG 253 (902)
T ss_pred HHHHHHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEe
Confidence 99999999999999999999999999999998632 2 999999999999999987531 1
Q ss_pred -ccc------------------------ccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEE
Q 047849 264 -VFE------------------------DEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNI 318 (651)
Q Consensus 264 -~~~------------------------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~ 318 (651)
.|+ +.+.++..+++++.+|.++|+++|..||.+.++.++|+.+.++ .||..
T Consensus 254 vGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~dd----iDFr~ 329 (902)
T KOG0104|consen 254 VGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDD----IDFRL 329 (902)
T ss_pred eccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhc----ccccc
Confidence 011 3345778899999999999999999999999999999999988 89999
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CCCCCcCCccchheehhHH
Q 047849 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 319 ~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~~~~~~~p~~aVA~GAa~ 397 (651)
.|||++||++|.++..++..+|.++|..++++.++|+.|+|.||+||+|.||+.|.++.| .++...+|.|||++.||++
T Consensus 330 kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~ 409 (902)
T KOG0104|consen 330 KVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVY 409 (902)
T ss_pred ceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997 5688999999999999999
Q ss_pred HhhhccC--CcceeEEEecccCccceeecCC--------eEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCccc
Q 047849 398 QGGILRG--DVKELLLLDVTPLSLGIETLGG--------IFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREM 467 (651)
Q Consensus 398 ~a~~l~~--~~~~~~~~d~~~~sigi~~~~~--------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~ 467 (651)
+|+.|+. +++++.+.|.++|+|-++..+. .-..+|++|.++|..+..+|+.+.|+ +.+.+-.|.-.
T Consensus 410 ~aA~LSksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~- 485 (902)
T KOG0104|consen 410 QAAHLSKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG- 485 (902)
T ss_pred HHHhhcccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-
Confidence 9999997 5789999999999988765432 22358999999999988888877763 44433333211
Q ss_pred cccCcceeEEEEeCCCCC----CC---CCCeeEEEEEEcCCeeEEEEEEec---------------------CC------
Q 047849 468 ASDNKSLGEFELVGIPPA----PR---GMPQIEVTFDIDANGIVTVSAKDK---------------------AT------ 513 (651)
Q Consensus 468 ~~~n~~lg~~~l~~~~~~----~~---g~~~i~v~f~~d~~G~l~v~~~~~---------------------~t------ 513 (651)
..+-+|++.++... +. ....|+++|.+|.+|++.|+..+. .+
T Consensus 486 ----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~ 561 (902)
T KOG0104|consen 486 ----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEET 561 (902)
T ss_pred ----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccc
Confidence 23346777776532 11 135699999999999999874320 00
Q ss_pred -----------------Cc--------------------------------------eeeEEecCC----CCCCHHHHHH
Q 047849 514 -----------------GK--------------------------------------EQQITIRSS----GGLSEDEIEK 534 (651)
Q Consensus 514 -----------------~~--------------------------------------~~~~~i~~~----~~ls~~~i~~ 534 (651)
++ .+.+.|... ..|++..++.
T Consensus 562 ~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~ 641 (902)
T KOG0104|consen 562 SDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDA 641 (902)
T ss_pred cccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHH
Confidence 00 002444432 4599999999
Q ss_pred HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh--hcccCCCHHHHHHHHHHHHHHHHHhccCC----HHHHHHHH
Q 047849 535 MVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG--EYREKIPSEVAKEIEDAVADLRKAMGADN----VDDIKSKL 608 (651)
Q Consensus 535 ~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~~~~~~k~ 608 (651)
....++.+.+.|+.+.+++++-|+||.++|.+++.|. +|.++.+++++.+|...+..+.+||+.+. ...+.+++
T Consensus 642 ~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~ 721 (902)
T KOG0104|consen 642 AVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKL 721 (902)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 9999999999999999999999999999999999996 57788999999999999999999998763 78889999
Q ss_pred HHHHHHHHHHHHHH
Q 047849 609 DAANKAVSKIGQHM 622 (651)
Q Consensus 609 ~~l~~~~~~i~~~~ 622 (651)
.+|++.+..+..|.
T Consensus 722 a~L~~l~~~~~~R~ 735 (902)
T KOG0104|consen 722 AELKKLETSKNFRE 735 (902)
T ss_pred HHHHHHHhhhhHHH
Confidence 99998888776553
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.9e-52 Score=452.90 Aligned_cols=309 Identities=27% Similarity=0.405 Sum_probs=264.1
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEe----------------------------------------
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFN---------------------------------------- 98 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~---------------------------------------- 98 (651)
++|||||||||+||++.+|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred eCCcEEEcHhHHhhhhhCCCch--hhhhhhhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHH
Q 047849 99 QKGELLVGTPAKRQAVTNPTNT--LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLT 176 (651)
Q Consensus 99 ~~~~~~vG~~A~~~~~~~p~~~--i~~~Kr~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~ 176 (651)
.++..++|..|+.+...+|+++ +..+|++||...-.+ +....++++++++|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHHH
Confidence 2457789999999999999998 679999999753211 122348999999999
Q ss_pred HHHHHHHHhhCCCCCeEEEEecCCCC-----HHHHHH---HHHHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEE
Q 047849 177 KMKETAESYLGKSVSKAVITVPAYFN-----DAQRQA---TKDAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFD 247 (651)
Q Consensus 177 ~l~~~a~~~~~~~~~~~VITVPa~f~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD 247 (651)
+|++.++.++|.++.++|||||++|+ +.||++ +++||+.|||+++++++||+|||++|+.....+ ++||||
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D 215 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVD 215 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEE
Confidence 99999999999999999999999998 778776 699999999999999999999999999765544 999999
Q ss_pred eCCcceEEEEEEEeccc----------------------cc------------------ccCCCCc--------------
Q 047849 248 LGGGTFDVSILEISNGV----------------------FE------------------DEGIDLS-------------- 273 (651)
Q Consensus 248 ~GggT~Dvsv~~~~~~~----------------------~~------------------~~~~~~~-------------- 273 (651)
+||||||+|++++.++. |+ +.+.++.
T Consensus 216 ~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~ 295 (450)
T PRK11678 216 IGGGTTDCSMLLMGPSWRGRADRSASLLGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVP 295 (450)
T ss_pred eCCCeEEEEEEEecCcccccCCcceeEEecCCCCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccc
Confidence 99999999999985421 11 0011000
Q ss_pred ---------------------cCHHHH------------HHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEe
Q 047849 274 ---------------------KDRLAL------------QRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITL 320 (651)
Q Consensus 274 ---------------------~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~i 320 (651)
.++..+ .+|+.+||++|+.||....+.+.++.+. .++...|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~~I 369 (450)
T PRK11678 296 AQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLATEI 369 (450)
T ss_pred hhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCcceee
Confidence 012222 3678999999999999999999887654 2467999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 321 TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 321 tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
||++|+++++|+++++.++++++|+++++. ++.|+||||+|+||.|++.|++.||.......+|.++||.|+|++|.
T Consensus 370 tR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 370 SQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQ 446 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHH
Confidence 999999999999999999999999999975 47999999999999999999999987777788999999999999987
Q ss_pred hc
Q 047849 401 IL 402 (651)
Q Consensus 401 ~l 402 (651)
.+
T Consensus 447 ~~ 448 (450)
T PRK11678 447 VV 448 (450)
T ss_pred hh
Confidence 53
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=5.5e-36 Score=317.03 Aligned_cols=298 Identities=22% Similarity=0.301 Sum_probs=220.7
Q ss_pred EEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC-c-EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChHH
Q 047849 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG-E-LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQT 137 (651)
Q Consensus 60 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~-~-~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~~ 137 (651)
+||||||+||+++.. ++..++. .||+|+|..++ . ..+|..|+.+..+.|.+.... +++
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~pi----- 65 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------RPL----- 65 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------ccC-----
Confidence 899999999999775 4445554 59999997542 3 479999988766666654321 111
Q ss_pred HHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC
Q 047849 138 QKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG 217 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG 217 (651)
.+ ..+...+++..+|+++.+.+..........+|||||++|++.||+++++|++.||
T Consensus 66 --------------~~---------G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 66 --------------RD---------GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred --------------CC---------CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 11 1223445667777887765543322334479999999999999999999999999
Q ss_pred CceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHH--H-----HHHHH
Q 047849 218 LDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLAL--Q-----RLREA 285 (651)
Q Consensus 218 l~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~--~-----~L~~~ 285 (651)
++.+.+++||+|||++|+.+...+ .++|||+||||||+++++.++-.+. ..|.+++..-... . .-...
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i~~~l~~~~~~~~~~~~ 202 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAIIRYIRKKYKLLIGERT 202 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHHHHHHHHHhchhcCHHH
Confidence 999999999999999999865444 8999999999999999987543222 1222222211110 0 01347
Q ss_pred HHHhhhhcCCCc----eeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCC-eEE
Q 047849 286 AEKAKIELSSTT----QTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDAN--ITTKDVD-EVL 358 (651)
Q Consensus 286 ~e~~K~~Ls~~~----~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~-~Vv 358 (651)
||++|+.++... ...+.+.. .+...+....+.|+|++|+++++++++++.+.+++.|+.++ +....++ .|+
T Consensus 203 ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~Iv 280 (336)
T PRK13928 203 AEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGII 280 (336)
T ss_pred HHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEE
Confidence 999999987642 12233221 11111245678999999999999999999999999999986 4456677 799
Q ss_pred EecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 359 LVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 359 LvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
|+||+|++|.|++.|++.|+.++....||+++||+|||+++..+
T Consensus 281 L~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 281 MTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred EECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999999999999999988888999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2e-35 Score=311.79 Aligned_cols=296 Identities=26% Similarity=0.316 Sum_probs=225.3
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCCc--EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKGE--LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~~--~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
.+||||||+|+++ +.+++.. +.| .||+|+|+.++. ..||..|+.+..++|.++... + ++.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi~--- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PMK--- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cCC---
Confidence 5999999999985 5555554 333 499999975543 679999999988888876542 1 111
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCC--eEEEEecCCCCHHHHHHHHHHHH
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVS--KAVITVPAYFNDAQRQATKDAGR 214 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~--~~VITVPa~f~~~qr~~l~~Aa~ 214 (651)
+| .+..-++++.+|++++..++..++..+. .+|||||++|++.||+++.+|++
T Consensus 68 ----------------~G---------~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 68 ----------------DG---------VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred ----------------CC---------ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 11 1122378899999999999888876554 79999999999999999999999
Q ss_pred HcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHHH-------HH
Q 047849 215 IAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLALQ-------RL 282 (651)
Q Consensus 215 ~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~~-------~L 282 (651)
.||++++.+++||+|||++|+....+. .++|+|+||||+|++++.+++-.+. -.|.++...-..+. .-
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 202 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRKKYNLLIG 202 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHHHHHHHHHhCcCcC
Confidence 999999999999999999998775554 8999999999999999986543322 11222211110000 00
Q ss_pred HHHHHHhhhhcCCCc----eeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCC-
Q 047849 283 REAAEKAKIELSSTT----QTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT--TKDVD- 355 (651)
Q Consensus 283 ~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~- 355 (651)
...||++|+.++... ...+.+... +........+.+++++|++++.+++.++.+.|.+.|+++... ...++
T Consensus 203 ~~~AE~iK~~l~~~~~~~~~~~~~v~g~--~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~ 280 (335)
T PRK13929 203 ERTAEQVKMEIGYALIEHEPETMEVRGR--DLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDR 280 (335)
T ss_pred HHHHHHHHHHHcCCCCCCCCceEEEeCC--ccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCC
Confidence 257999999998742 122222111 111123467899999999999999999999999999998643 35677
Q ss_pred eEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 356 EVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 356 ~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
.|+|+||+|++|.+++.|++.|+.++....||+++|+.||+..-
T Consensus 281 gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 281 GVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred CEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 69999999999999999999999988888999999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.6e-33 Score=295.76 Aligned_cols=297 Identities=24% Similarity=0.307 Sum_probs=211.1
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC-Cc-EEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-GE-LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~-~~-~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
.|||||||++++++.. +...++ .+||+|+|.++ +. .++|+.|+.+..++|.++... +-+
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~pi-------- 67 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--RPM-------- 67 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--ecC--------
Confidence 5999999999998443 333333 27999999755 33 589999998876666654321 001
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
.+| ..... +.+..+|+++......... .-..+|+|||++|++.||+++++|++.|
T Consensus 68 ---------------~~G--------~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~~~a 122 (334)
T PRK13927 68 ---------------KDG--------VIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESALGA 122 (334)
T ss_pred ---------------CCC--------eecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 111 11111 2234445554443332221 1248999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHH--H-----HHHH
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLAL--Q-----RLRE 284 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~--~-----~L~~ 284 (651)
|++.+.+++||+|||++|+...... .++|||+||||||+++++.++..+. ..|.+++..-..+ . .-..
T Consensus 123 g~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~ 202 (334)
T PRK13927 123 GAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYNLLIGER 202 (334)
T ss_pred CCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCCcCChHHHHHHHHHHHHHHHhCcCcCHH
Confidence 9999999999999999999865544 7899999999999999986653332 1122222111100 0 0135
Q ss_pred HHHHhhhhcCCCce----eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCC-eE
Q 047849 285 AAEKAKIELSSTTQ----TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT--TKDVD-EV 357 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~-~V 357 (651)
.||++|+.++.... ..+.+.. .+.....+..+.|+|++|++++.+.++++.+.|.++|++++.. ...++ .|
T Consensus 203 ~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~I 280 (334)
T PRK13927 203 TAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGI 280 (334)
T ss_pred HHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCE
Confidence 69999999986432 2233211 1111113457899999999999999999999999999998643 23344 59
Q ss_pred EEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 358 LLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 358 vLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+|+||+|++|.+++.|++.|+.++....||+++||+||++++..
T Consensus 281 vL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 281 VLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred EEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999988888899999999999999775
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=4.1e-33 Score=294.82 Aligned_cols=297 Identities=24% Similarity=0.295 Sum_probs=209.7
Q ss_pred EEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC----Cc--EEEcHhHHhhhhhCCCchhhhhhhhhCCCCC
Q 047849 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK----GE--LLVGTPAKRQAVTNPTNTLFGTKRLIGRKFD 133 (651)
Q Consensus 60 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~----~~--~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~ 133 (651)
+||||||+||++++... ..++ ..||+|+|..+ .. .++|+.|+.+..+.|.++.. ++-+.
T Consensus 5 ~giDlGt~~s~i~~~~~--~~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR--GIVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCC--CEEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecCC----
Confidence 89999999999877432 2333 37999999744 22 67999998876565655421 22121
Q ss_pred ChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 134 DPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+| ..... +.+..+++++........+.....+|+|||++|+..||+++++|+
T Consensus 70 -------------------~G--------~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 70 -------------------DG--------VIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred -------------------CC--------EEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 11 11122 223344444444333222222238999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHH--HHH-----
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLA--LQR----- 281 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~--~~~----- 281 (651)
+.||++.+.+++||+|||++|+...... .++|||+||||||+++++.++..+. ..|.+++..-.. ..+
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l~~~l~~~~~~~~ 201 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAIINYIRRTYNLLI 201 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999998765444 8999999999999999987654433 122222211100 001
Q ss_pred HHHHHHHhhhhcCCCce-----eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC-
Q 047849 282 LREAAEKAKIELSSTTQ-----TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITT-KDV- 354 (651)
Q Consensus 282 L~~~~e~~K~~Ls~~~~-----~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~-~~i- 354 (651)
-+..||++|+.++.... ..+.+.. .+........+.|++++|.+++.+.++++.+.+.+.|+.++... .++
T Consensus 202 ~~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~ 279 (333)
T TIGR00904 202 GEQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIV 279 (333)
T ss_pred CHHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhc
Confidence 13579999999976422 1222211 01001123457899999999999999999999999999976432 233
Q ss_pred C-eEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 355 D-EVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 355 ~-~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+ .|+|+||+|++|.+++.|++.|+.++....||+++||.||++++..
T Consensus 280 ~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 280 ERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred cCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 3 6999999999999999999999999988999999999999999764
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.4e-32 Score=287.01 Aligned_cols=299 Identities=25% Similarity=0.314 Sum_probs=215.4
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC-C-cEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK-G-ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~-~-~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
.+||||||++++++++..+ .++ .+||+|+|..+ + ..++|..|+......|.+... ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~---------- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--IR---------- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--ee----------
Confidence 4999999999999886332 232 25999999642 2 368999998876555544211 10
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
|+ .+| .. ..-+.+..+|+++.+.+..........+|+|+|++|++.+|+++.+|++.+
T Consensus 69 --------pi-----~~G--------~i-~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~ 126 (335)
T PRK13930 69 --------PL-----KDG--------VI-ADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHA 126 (335)
T ss_pred --------cC-----CCC--------eE-cCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHc
Confidence 10 111 11 122446677777776655544444678999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHHH--HH-----HHH
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLAL--QR-----LRE 284 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~~--~~-----L~~ 284 (651)
|++.+.+++||+|||++|+...... .++|||+||||||++++..+..... ..|.+++..-... .+ -..
T Consensus 127 g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~ 206 (335)
T PRK13930 127 GAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIVQYVRRKYNLLIGER 206 (335)
T ss_pred CCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEeecCcCchhHHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999998765443 7899999999999999986543221 2222222111100 00 126
Q ss_pred HHHHhhhhcCCCcee----EEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCe-E
Q 047849 285 AAEKAKIELSSTTQT----DINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT--TKDVDE-V 357 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~~----~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~--~~~i~~-V 357 (651)
.||++|+.++..... .+.+... +...+....+.|++++|++++.+.++++.+.+.+.|+.+... ...++. |
T Consensus 207 ~ae~~K~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~I 284 (335)
T PRK13930 207 TAEEIKIEIGSAYPLDEEESMEVRGR--DLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGI 284 (335)
T ss_pred HHHHHHHHhhcCcCCCCCceEEEECc--cCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCE
Confidence 799999999865321 2222211 111113357899999999999999999999999999987532 233454 9
Q ss_pred EEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 358 LLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 358 vLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
+|+||+|++|.+++.|++.|+.++....+|+++||+||++++...
T Consensus 285 vL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 285 VLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred EEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999999888888899999999999998653
No 26
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=1.6e-28 Score=246.01 Aligned_cols=197 Identities=23% Similarity=0.300 Sum_probs=163.9
Q ss_pred ChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEE
Q 047849 166 SPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAV 245 (651)
Q Consensus 166 s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlV 245 (651)
.--+..+++|+++++.++.+++.++.++|||||++|++.||+++.+|++.|||+++.+++||.|||++|+.. ..+|
T Consensus 37 ~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----~~~v 112 (239)
T TIGR02529 37 VDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----NGAV 112 (239)
T ss_pred EEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----CcEE
Confidence 345678899999999999999999999999999999999999999999999999999999999999998754 3599
Q ss_pred EEeCCcceEEEEEEEeccccc----ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEe
Q 047849 246 FDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITL 320 (651)
Q Consensus 246 vD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~i 320 (651)
+|+||||+|+++++.+.-.+. ..|.+++..- ..+..-+.+||++|+.++.
T Consensus 113 vDiGggtt~i~i~~~G~i~~~~~~~~GG~~it~~Ia~~~~i~~~~AE~~K~~~~~------------------------- 167 (239)
T TIGR02529 113 VDVGGGTTGISILKKGKVIYSADEPTGGTHMSLVLAGAYGISFEEAEEYKRGHKD------------------------- 167 (239)
T ss_pred EEeCCCcEEEEEEECCeEEEEEeeecchHHHHHHHHHHhCCCHHHHHHHHHhcCC-------------------------
Confidence 999999999999875443333 1222222211 1111235789999987541
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHH
Q 047849 321 TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 321 tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~ 397 (651)
.+++.++++++++++.+.+++.|++. .++.|+|+||+|++|.+++.+++.|+.++..+.||++++|.|||+
T Consensus 168 -~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 168 -EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 34577899999999999999999864 457999999999999999999999999999999999999999986
No 27
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.96 E-value=2.4e-28 Score=252.31 Aligned_cols=298 Identities=26% Similarity=0.317 Sum_probs=198.5
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC--cEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG--ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~--~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
-+||||||+++.++. . ++-.++. .||+|+|+.+. -..+|..|+.+..+.|.+...
T Consensus 3 ~igIDLGT~~t~i~~-~-~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-------------- 59 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-K-GKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-------------- 59 (326)
T ss_dssp EEEEEE-SSEEEEEE-T-TTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------
T ss_pred ceEEecCcccEEEEE-C-CCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------
Confidence 589999999998833 3 3333332 39999997643 345899998766555544311
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHc
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIA 216 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~A 216 (651)
..| .....+.=-++...+|+++.+.+.......-..++|+||+.-++-+|+++.+|+..|
T Consensus 60 ------~~P--------------l~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~a 119 (326)
T PF06723_consen 60 ------VRP--------------LKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQA 119 (326)
T ss_dssp ------E-S--------------EETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred ------Ecc--------------ccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 001 111222334567778888877776642334458999999999999999999999999
Q ss_pred CCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccC-------HHHHHHHHH
Q 047849 217 GLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKD-------RLALQRLRE 284 (651)
Q Consensus 217 Gl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~-------~~~~~~L~~ 284 (651)
|...+.+++||.|||+..+.+-.+. ..||+|+||||||++++..++-+.. ..|.++... .+.+..=..
T Consensus 120 Ga~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~DeaI~~~ir~~y~l~Ig~~ 199 (326)
T PF06723_consen 120 GARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEAIIRYIREKYNLLIGER 199 (326)
T ss_dssp T-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHSEE--HH
T ss_pred CCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHHHHHHHHHhhCcccCHH
Confidence 9999999999999999999886554 8899999999999999975443222 111111111 011112246
Q ss_pred HHHHhhhhcCCCce----eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCC--CeE
Q 047849 285 AAEKAKIELSSTTQ----TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITT-KDV--DEV 357 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~----~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~-~~i--~~V 357 (651)
.||++|+.+++... ..+.+. ..+...+..-.+.|+-+++.+.+++.+.+|.+.|+++|+...-.. .|| ++|
T Consensus 200 tAE~iK~~~g~~~~~~~~~~~~v~--Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel~~DI~~~GI 277 (326)
T PF06723_consen 200 TAEKIKIEIGSASPPEEEESMEVR--GRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPELAADILENGI 277 (326)
T ss_dssp HHHHHHHHH-BSS--HHHHEEEEE--EEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHH-E
T ss_pred HHHHHHHhcceeeccCCCceEEEE--CccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHCCE
Confidence 79999999986522 233332 222223356789999999999999999999999999999842110 122 479
Q ss_pred EEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 358 LLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 358 vLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+|+||+|+++.+.+.|++.++.++....||..+||.||......
T Consensus 278 ~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 278 VLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp EEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-
T ss_pred EEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999876543
No 28
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.94 E-value=2e-25 Score=227.58 Aligned_cols=197 Identities=27% Similarity=0.368 Sum_probs=162.8
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEE
Q 047849 168 SQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFD 247 (651)
Q Consensus 168 eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD 247 (651)
.+.....|+++++.++.++|.++..++++||++|+..+|+++.+|++.|||++..+++||.|++.+|... ..+|+|
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~----~~~vvD 141 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID----NGAVVD 141 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----CcEEEE
Confidence 4566778899999999999988999999999999999999999999999999999999999999988653 269999
Q ss_pred eCCcceEEEEEEEeccccc----ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecH
Q 047849 248 LGGGTFDVSILEISNGVFE----DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTR 322 (651)
Q Consensus 248 ~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr 322 (651)
+||||||+++++-+.-.+. ..+.+++.+- +.+..-+.+||++|+.++ ++
T Consensus 142 IGggtt~i~v~~~g~~~~~~~~~~GG~~it~~Ia~~l~i~~~eAE~lK~~~~--------------------------~~ 195 (267)
T PRK15080 142 IGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGAYGISFEEAEQYKRDPK--------------------------HH 195 (267)
T ss_pred eCCCcEEEEEEECCeEEEEecccCchHHHHHHHHHHhCCCHHHHHHHHhccC--------------------------CH
Confidence 9999999999864332322 1222222211 111223678899987652 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 323 SKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 323 ~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
+++.++++++++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|+.++....||++++|.|||+|+
T Consensus 196 ~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 196 KEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 6789999999999999999999863 67899999999999999999999999999899999999999999875
No 29
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.93 E-value=9.3e-24 Score=209.71 Aligned_cols=301 Identities=25% Similarity=0.316 Sum_probs=216.7
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC--C--cEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCC
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK--G--ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDD 134 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~--~--~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~ 134 (651)
.+||||||.|+.|..- ++. ++.| -||+|++..+ . -..+|.+|+.+.-+.|.+...
T Consensus 8 diGIDLGTanTlV~~k--~kg-IVl~------ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a------------ 66 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKG-IVLN------EPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA------------ 66 (342)
T ss_pred cceeeecccceEEEEc--Cce-EEec------CceEEEEeecCCCceEEEehHHHHHHhccCCCCceE------------
Confidence 6999999999998554 222 3332 3999999763 2 245899998765555554311
Q ss_pred hHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhC-CCCCeEEEEecCCCCHHHHHHHHHHH
Q 047849 135 PQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG-KSVSKAVITVPAYFNDAQRQATKDAG 213 (651)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~-~~~~~~VITVPa~f~~~qr~~l~~Aa 213 (651)
+.+..+| .+.--++...+|+|+.+.+....+ .....++|.||..-++-+|+++++|+
T Consensus 67 -------------iRPmkdG---------VIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~ 124 (342)
T COG1077 67 -------------IRPMKDG---------VIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA 124 (342)
T ss_pred -------------EeecCCc---------EeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH
Confidence 1111222 233445677778888777764333 34457999999999999999999999
Q ss_pred HHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCHHH-------HHH
Q 047849 214 RIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDRLA-------LQR 281 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~~~-------~~~ 281 (651)
+.||...+.++.||.|||+..+..-.+. .-||||+||||+|++++.+.+-+.. -.|..+..+.-. +..
T Consensus 125 ~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~~~nl~I 204 (342)
T COG1077 125 ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRKKYNLLI 204 (342)
T ss_pred HhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHHHhCeee
Confidence 9999999999999999999888775554 5699999999999999987664433 222222222111 111
Q ss_pred HHHHHHHhhhhcCCCce---e-EEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCC
Q 047849 282 LREAAEKAKIELSSTTQ---T-DINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDAN--ITTKDVD 355 (651)
Q Consensus 282 L~~~~e~~K~~Ls~~~~---~-~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~--~~~~~i~ 355 (651)
=-..+|++|+....... . ...++.-..+...+..-.++++-+++.+.+++.+++|.+.++..|+... +..+-++
T Consensus 205 Ge~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~e 284 (342)
T COG1077 205 GERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVE 284 (342)
T ss_pred cHHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhh
Confidence 23568999999876422 1 1112222222222244578999999999999999999999999999843 3333445
Q ss_pred e-EEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 356 E-VLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 356 ~-VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
. ++|+||+|.+..+.+.|++..+.++....+|..+||.|+......+
T Consensus 285 rgivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 285 RGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred CceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 5 9999999999999999999999999999999999999998876654
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.89 E-value=1.3e-21 Score=210.02 Aligned_cols=188 Identities=19% Similarity=0.331 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCH-H
Q 047849 204 AQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-L 277 (651)
Q Consensus 204 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~ 277 (651)
...+.+.+|++.|||++..++.||.|+|++|....... .++|+|+||||||++++..+...|. ..|.+++.+- .
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~~~~i~~GG~~it~~i~~ 237 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRYTKVIPIGGNHITKDIAK 237 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEEEeeecchHHHHHHHHHH
Confidence 34677888999999999999999999999986543333 8999999999999999975443332 2233333332 2
Q ss_pred HHHHHHHHHHHhhhhcCCC------ceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHH-HHHHHcCCC
Q 047849 278 ALQRLREAAEKAKIELSST------TQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCK-NCLKDANIT 350 (651)
Q Consensus 278 ~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~-~~l~~a~~~ 350 (651)
.+...+.+||++|+.++.. .+..+.++.+. .+....++|++|++++++.++++.+.++ +.|++++.+
T Consensus 238 ~l~~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~ 311 (371)
T TIGR01174 238 ALRTPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELAEIIEARAEEILEIVKQKELRKSGFK 311 (371)
T ss_pred HhCCCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3345678999999999864 23455555432 2456899999999999999999999997 999998876
Q ss_pred CCCCCe-EEEecCccCcHhHHHHHHHHhcCCCCC------------cCCccchheehhHHH
Q 047849 351 TKDVDE-VLLVGGMTRVPKVQEVVSEIFGKSPSK------------GVNPDEAVALGAAIQ 398 (651)
Q Consensus 351 ~~~i~~-VvLvGGss~ip~i~~~l~~~f~~~~~~------------~~~p~~aVA~GAa~~ 398 (651)
.+++. |+|+||+|++|.|++.+++.|+.++.. ..+|..++|.|.++|
T Consensus 312 -~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 312 -EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTAVGLLLY 371 (371)
T ss_pred -ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHHHHHHhC
Confidence 56776 999999999999999999999865321 126788888888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=4.6e-22 Score=216.20 Aligned_cols=190 Identities=17% Similarity=0.238 Sum_probs=140.0
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccCH-HHH
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKDR-LAL 279 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~ 279 (651)
.+.+.+|++.|||++..++.||.|+|.++..+...+ .++|+|+||||||+++++-+.-.+. ..|.+++.+- ..+
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~~~~~i~~GG~~it~dIa~~l 247 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVTSDIAYAF 247 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEEEEeeeechHHHHHHHHHHHh
Confidence 344567999999999999999999999987665434 8999999999999999973321111 2333333322 122
Q ss_pred HHHHHHHHHhhhhcCCC------ceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHH-------HHHH
Q 047849 280 QRLREAAEKAKIELSST------TQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKN-------CLKD 346 (651)
Q Consensus 280 ~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~-------~l~~ 346 (651)
...+..||++|+.++.. .+..+.++.+.. .....++|.+|.+++++.++++.+.+++ .|..
T Consensus 248 ~i~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~ 321 (420)
T PRK09472 248 GTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQ 321 (420)
T ss_pred CcCHHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468899999776532 233455543321 1235889999999999977777777764 5566
Q ss_pred cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC------------cCCccchheehhHHHhhh
Q 047849 347 ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK------------GVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 347 a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~------------~~~p~~aVA~GAa~~a~~ 401 (651)
+++....++.|+|+||+|++|.|++.+++.|+.++.. ..+|..++|.|.++|+..
T Consensus 322 ~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 322 QGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred cCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHHHHHHHHHHhhh
Confidence 7887778899999999999999999999999865432 248999999999999773
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.81 E-value=6.3e-19 Score=186.80 Aligned_cols=232 Identities=24% Similarity=0.370 Sum_probs=173.2
Q ss_pred eCC-eeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCC-HHH---------------------------HHHHH
Q 047849 160 ANG-QQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFN-DAQ---------------------------RQATK 210 (651)
Q Consensus 160 ~~~-~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~-~~q---------------------------r~~l~ 210 (651)
..+ +.++.+++- .+.+.|......+-..++-..|-.|. |.| -+.+.
T Consensus 97 i~~~~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~gm~G~rL~v~vhvit~~~~~~~Nl~ 171 (418)
T COG0849 97 ISEEKEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPLGMSGVRLEVEVHVITGPKNILENLE 171 (418)
T ss_pred cCCCCccCHHHHH-----HHHHHHHhhccCCCceEEEEeeeEEEECCccccCCccccccceEEEEEEEEEcchHHHHHHH
Confidence 444 666777664 44444444333333556556665553 221 67789
Q ss_pred HHHHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEeccccc----ccCCCCccC-HHHHHHHHH
Q 047849 211 DAGRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFE----DEGIDLSKD-RLALQRLRE 284 (651)
Q Consensus 211 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~~~~~~-~~~~~~L~~ 284 (651)
+|.+.+||++..++.+|.|+|.+...+...+ +++++|+||||||+++++-+.-.+. -.|..++.+ .+.+..-+.
T Consensus 172 k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~vT~DIa~~l~t~~~ 251 (418)
T COG0849 172 KCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDHVTKDIAKGLKTPFE 251 (418)
T ss_pred HHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccHHHHHHHHHhCCCHH
Confidence 9999999999999999999999887766555 9999999999999999984433222 344445444 234445578
Q ss_pred HHHHhhhhcCCCce------eEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEE
Q 047849 285 AAEKAKIELSSTTQ------TDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVL 358 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~------~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~Vv 358 (651)
.||+.|+.+..... ..+.++...+ +....+||.++.+++++.+.++..+++..|++.++...-...|+
T Consensus 252 ~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~------~~~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvV 325 (418)
T COG0849 252 EAERIKIKYGSALISLADDEETIEVPSVGS------DIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVV 325 (418)
T ss_pred HHHHHHHHcCccccCcCCCcceEecccCCC------cccchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEE
Confidence 99999999976532 3355544432 23788999999999999999999999999999999866778999
Q ss_pred EecCccCcHhHHHHHHHHhcCCCC--C----------cCCccchheehhHHHhhhc
Q 047849 359 LVGGMTRVPKVQEVVSEIFGKSPS--K----------GVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 359 LvGGss~ip~i~~~l~~~f~~~~~--~----------~~~p~~aVA~GAa~~a~~l 402 (651)
|+||++.+|.+.+..++.|+.++. . ..+|..+.|.|..+|+...
T Consensus 326 lTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 326 LTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred EECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 999999999999999999985432 1 2368999999999998853
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.67 E-value=1e-15 Score=141.36 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcc
Q 047849 173 FVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGT 252 (651)
Q Consensus 173 ~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT 252 (651)
.+.+.+++.+++.+|..++++.-++|..--+...+...+..+.||++++.+++||+|||.-..++. -.|+|+||||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d----g~VVDiGGGT 151 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD----GGVVDIGGGT 151 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC----CcEEEeCCCc
Confidence 357899999999999999999999999987777788888999999999999999999997666553 3799999999
Q ss_pred eEEEEEEEeccccc----ccCCCCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHH
Q 047849 253 FDVSILEISNGVFE----DEGIDLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFET 327 (651)
Q Consensus 253 ~Dvsv~~~~~~~~~----~~~~~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~ 327 (651)
+-+|+++-++-.|. ..|..++.-- -.+..-+++||..|+.-... ++.-.
T Consensus 152 TGIsi~kkGkViy~ADEpTGGtHmtLvlAG~ygi~~EeAE~~Kr~~k~~--------------------------~Eif~ 205 (277)
T COG4820 152 TGISIVKKGKVIYSADEPTGGTHMTLVLAGNYGISLEEAEQYKRGHKKG--------------------------EEIFP 205 (277)
T ss_pred ceeEEEEcCcEEEeccCCCCceeEEEEEecccCcCHhHHHHhhhccccc--------------------------hhccc
Confidence 99999986554443 1111110000 00111236677776532111 12234
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 328 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
.+.|+++++.+.+.+.++.. .+..+.|+||+|.-|.+.+.+++.|+..+..+..|....-+|.|+-+
T Consensus 206 ~v~PV~eKMAeIv~~hie~~-----~i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 206 VVKPVYEKMAEIVARHIEGQ-----GITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred chhHHHHHHHHHHHHHhccC-----CCcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhhcc
Confidence 57899999999999999874 45689999999999999999999999999999999998888887643
No 34
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=99.62 E-value=3.3e-17 Score=147.11 Aligned_cols=77 Identities=48% Similarity=0.812 Sum_probs=73.7
Q ss_pred CchhhHHhHhhccccCCCCcccccccCCCCCCCCCccccccccccccccccCCCCCCcEEEEEcCCceEEEEEEeCC
Q 047849 1 MATSVLLRQLRRRDVASAPISAYKCFTSNIKPSWAPSNLGKSWASLTRPFSSKPAGNDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvGID~GTt~s~va~~~~~ 77 (651)
|||+||+||||||+++|+|||.|+|.+.+.+|+|.+++++++|+.|.+.|+..+...-+||+|+||+|++++...+.
T Consensus 1 ma~~al~rs~rrrdv~sapls~y~~~~~~~~p~w~~s~~~qn~a~~sra~~~kp~~~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 1 MAATALFRSIRRRDVVSAPLSVYKSLAGNAQPSWGSSYIGQNYASFSRAFGSKPVVNDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred CchHHHHHHHHhhhhhcCchHHHHHhhcCCCCCccccccccchHHHHHHhcCCCCccceeccCCCcchHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999887643
No 35
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.57 E-value=3.3e-14 Score=153.03 Aligned_cols=292 Identities=16% Similarity=0.133 Sum_probs=173.7
Q ss_pred EEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeC---------CcEEEcHhHHhhhhhCCCchhhhhhhhhCC
Q 047849 60 IGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQK---------GELLVGTPAKRQAVTNPTNTLFGTKRLIGR 130 (651)
Q Consensus 60 vGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~ 130 (651)
|.||+||.++++++..++.|..+ +||+++...+ ...++|+.|...... +
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------~- 59 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------G- 59 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC-------------c-
Confidence 78999999999999877656543 3777766432 356778776542100 0
Q ss_pred CCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHH
Q 047849 131 KFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATK 210 (651)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~ 210 (651)
.....|+ .+| .... -+....+++++...... ....-..+++++|..++..+|+.+.
T Consensus 60 ---------~~~~~P~-----~~G--------~i~d-~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~ 115 (371)
T cd00012 60 ---------LELIYPI-----EHG--------IVVD-WDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTT 115 (371)
T ss_pred ---------eEEcccc-----cCC--------EEeC-HHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHH
Confidence 0001111 111 1112 23344555555433211 1122457999999999988888887
Q ss_pred HH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc------ccCCCCccCHH------
Q 047849 211 DA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE------DEGIDLSKDRL------ 277 (651)
Q Consensus 211 ~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~------~~~~~~~~~~~------ 277 (651)
+. .+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.-+.-... ..|.++...-.
T Consensus 116 e~lfe~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~ 191 (371)
T cd00012 116 EIMFETFNVPALYVAIQAVLSLYASGR----TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRER 191 (371)
T ss_pred HHhhccCCCCEEEEechHHHHHHhcCC----CeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhc
Confidence 64 666899999999999999998875 37899999999999998752211110 11111111100
Q ss_pred ----HHHHHHHHHHHhhhhcCCCcee---E-----EEecceeccCCCCeeEEEEecHHHH---HHHHHH-----HHHHHH
Q 047849 278 ----ALQRLREAAEKAKIELSSTTQT---D-----INLPFITADASGAKHLNITLTRSKF---ETLVNN-----LIERTR 337 (651)
Q Consensus 278 ----~~~~L~~~~e~~K~~Ls~~~~~---~-----i~i~~~~~~~~g~~~~~~~itr~~f---e~l~~~-----~~~~i~ 337 (651)
....-...++..|+.+...... . ...........-++...+.++.+.| |-+++| ....+.
T Consensus 192 ~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~ 271 (371)
T cd00012 192 GYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGIS 271 (371)
T ss_pred CCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHH
Confidence 0011235577788776432110 0 0000000000000123455665544 223333 223677
Q ss_pred HHHHHHHHHcCC--CCCCCCeEEEecCccCcHhHHHHHHHHhcC----------CCCCcCCccchheehhHHHhhh
Q 047849 338 APCKNCLKDANI--TTKDVDEVLLVGGMTRVPKVQEVVSEIFGK----------SPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 338 ~~i~~~l~~a~~--~~~~i~~VvLvGGss~ip~i~~~l~~~f~~----------~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+.|.+.|..... ...-.+.|+|+||+|++|.+.+.|.+.+.. .+....+|..++-+||+++|..
T Consensus 272 ~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 272 EAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 888888877542 223467899999999999999999998852 1234568899999999999875
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.48 E-value=7.1e-13 Score=142.79 Aligned_cols=286 Identities=17% Similarity=0.158 Sum_probs=169.0
Q ss_pred EEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC--------cEEEcHhHHhhhhhCCCchhhhhhhhhCC
Q 047849 59 IIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG--------ELLVGTPAKRQAVTNPTNTLFGTKRLIGR 130 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~--------~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~ 130 (651)
.|.||+||.++++++..+..|.++. ||+|+...++ ..++|..|.... ...
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~---------- 60 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQVVF--------PSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL---------- 60 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcEEc--------cceeeEecccccccCCCcceEecchhhhcC----CCc----------
Confidence 6899999999999998777777653 8888875443 246677663211 000
Q ss_pred CCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCC--CCCeEEEEecCCCCHHHHHH
Q 047849 131 KFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGK--SVSKAVITVPAYFNDAQRQA 208 (651)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~--~~~~~VITVPa~f~~~qr~~ 208 (651)
.-.+|+ .+| .+.--+.+..+++++... .++. .-..+++|.|...+..+|+.
T Consensus 61 ----------~~~~P~-----~~G---------~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~~r~~ 113 (373)
T smart00268 61 ----------ELKYPI-----EHG---------IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKSNREK 113 (373)
T ss_pred ----------eecCCC-----cCC---------EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHHHHHH
Confidence 001111 111 122234455666666543 2322 23579999999999999999
Q ss_pred HHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc-------ccCCCCccCHH-H-
Q 047849 209 TKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE-------DEGIDLSKDRL-A- 278 (651)
Q Consensus 209 l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~-------~~~~~~~~~~~-~- 278 (651)
+.+.+ +..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.-+ .... ..|.++...-. .
T Consensus 114 ~~e~lfE~~~~~~v~~~~~~~~a~~~~g~----~~~lVVDiG~~~t~v~pv~~G-~~~~~~~~~~~~GG~~l~~~l~~~l 188 (373)
T smart00268 114 ILEIMFETFNFPALYIAIQAVLSLYASGR----TTGLVIDSGDGVTHVVPVVDG-YVLPHAIKRIDIAGRDLTDYLKELL 188 (373)
T ss_pred HHHHhhccCCCCeEEEeccHHHHHHhCCC----CEEEEEecCCCcceEEEEECC-EEchhhheeccCcHHHHHHHHHHHH
Confidence 98886 46799999999999999998872 378999999999999988622 1111 11111111000 0
Q ss_pred --------HHHHHHHHHHhhhhcCCCcee---EEE----------ecceeccCCCCeeEEEEecHHHH---HHHHHHH--
Q 047849 279 --------LQRLREAAEKAKIELSSTTQT---DIN----------LPFITADASGAKHLNITLTRSKF---ETLVNNL-- 332 (651)
Q Consensus 279 --------~~~L~~~~e~~K~~Ls~~~~~---~i~----------i~~~~~~~~g~~~~~~~itr~~f---e~l~~~~-- 332 (651)
...-...++.+|+.+...... ... ....+...+| . .+.+..+.| |.+++|-
T Consensus 189 ~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg-~--~~~~~~er~~~~E~lf~p~~~ 265 (373)
T smart00268 189 SERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDG-N--TIKVGNERFRIPEILFKPELI 265 (373)
T ss_pred HhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCC-C--EEEEChHHeeCchhcCCchhc
Confidence 011234567777765432110 000 0000000011 2 233333332 2233331
Q ss_pred ---HHHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC--------CCCCcCCccchheehhHHHh
Q 047849 333 ---IERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK--------SPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 333 ---~~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~a 399 (651)
...+.++|.++|..+..+ ..-.+.|+|+||+|++|.+.+.|.+.+.. .+....++..++=.||+++|
T Consensus 266 ~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~sila 345 (373)
T smart00268 266 GLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILA 345 (373)
T ss_pred CCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCccccc
Confidence 235677777777765321 12236799999999999999999988831 12234566778888999887
Q ss_pred hh
Q 047849 400 GI 401 (651)
Q Consensus 400 ~~ 401 (651)
..
T Consensus 346 s~ 347 (373)
T smart00268 346 SL 347 (373)
T ss_pred Cc
Confidence 75
No 37
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.42 E-value=1.4e-11 Score=130.45 Aligned_cols=198 Identities=16% Similarity=0.184 Sum_probs=118.7
Q ss_pred EEEEecCCCCHHH-HHHHHHHHHHc------C------CceEEeecchHHHhhhhccccC--------C-CeEEEEEeCC
Q 047849 193 AVITVPAYFNDAQ-RQATKDAGRIA------G------LDVQRIINEPTAASLSYGMNNK--------E-GLIAVFDLGG 250 (651)
Q Consensus 193 ~VITVPa~f~~~q-r~~l~~Aa~~A------G------l~~~~li~Ep~AAAl~y~~~~~--------~-~~vlVvD~Gg 250 (651)
++...|..+-..+ ++.+++..... | +..+.+++||.+|.+.+..+.. + +.++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 3458998775444 36666554221 1 2346789999999887765421 1 3789999999
Q ss_pred cceEEEEEEEecccccccCCCCccCHHHHHHHHHH-HHHhhhhcCCCceeEEEecceecc----CCCCeeEEEEecHHHH
Q 047849 251 GTFDVSILEISNGVFEDEGIDLSKDRLALQRLREA-AEKAKIELSSTTQTDINLPFITAD----ASGAKHLNITLTRSKF 325 (651)
Q Consensus 251 gT~Dvsv~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~e~~K~~Ls~~~~~~i~i~~~~~~----~~g~~~~~~~itr~~f 325 (651)
||+|++++. ++.+.... . ...+..+..+.+. ++..+.......-....++..... ..+.. .+.+ ++++
T Consensus 195 ~TtD~~v~~--~~~~~~~~-s-~s~~~G~~~~~~~I~~~i~~~~~~~~~~~~~ie~~l~~g~i~~~~~~--~id~-~~~~ 267 (344)
T PRK13917 195 GTTDLDTIQ--NLKRVEEE-S-FVIPKGTIDVYKRIASHISKKEEGASITPYMLEKGLEYGACKLNQKT--VIDF-KDEF 267 (344)
T ss_pred CcEEEEEEe--CcEEcccc-c-ccccchHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHcCcEEeCCCc--eEeh-HHHH
Confidence 999999986 22221100 0 0011222222222 222211110000000011111100 00001 1223 3557
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++++++++.+.+...+.. ..+++.|+|+||++++ +++.|++.|+.- ....||..|.|+|...+|..+.+
T Consensus 268 ~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 268 YKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCChHHHHHHHHHHHHHHHhc
Confidence 778899999998888887754 3578999999999987 899999999853 56789999999999999986654
No 38
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.29 E-value=4.7e-10 Score=122.35 Aligned_cols=273 Identities=14% Similarity=0.097 Sum_probs=154.1
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC------------cEEEcHhHHhhhhhCCCchhhhhh
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG------------ELLVGTPAKRQAVTNPTNTLFGTK 125 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~------------~~~vG~~A~~~~~~~p~~~i~~~K 125 (651)
..|.||+||.++++++.....|.++ +||+|+..+++ ..++|+.|.... .. .
T Consensus 5 ~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~~--~--- 67 (414)
T PTZ00280 5 PVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----KS--Y--- 67 (414)
T ss_pred CeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCc----CC--c---
Confidence 4799999999999999977777754 37887764321 234454443210 00 0
Q ss_pred hhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH
Q 047849 126 RLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 126 r~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q 205 (651)
.-.+|+ . +|..... +.+..+++++..... .....-..+++|.|..++..+
T Consensus 68 ---------------~l~~Pi-----~--------~G~I~dw-d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~ 117 (414)
T PTZ00280 68 ---------------TLTYPM-----K--------HGIVEDW-DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPEN 117 (414)
T ss_pred ---------------EEecCc-----c--------CCEeCCH-HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHH
Confidence 001111 1 1222222 344455555432211 112223468999999999999
Q ss_pred HHHHHHHHHH-cCCceEEeecchHHHhhhhccccC-----C-CeEEEEEeCCcceEEEEEEEeccccc-------ccCCC
Q 047849 206 RQATKDAGRI-AGLDVQRIINEPTAASLSYGMNNK-----E-GLIAVFDLGGGTFDVSILEISNGVFE-------DEGID 271 (651)
Q Consensus 206 r~~l~~Aa~~-AGl~~~~li~Ep~AAAl~y~~~~~-----~-~~vlVvD~GggT~Dvsv~~~~~~~~~-------~~~~~ 271 (651)
|+.+.+.+-. .+++-+.+..+|.+|++++..... . .+-||||+|.|+++++-+.-+. .+. ..|.+
T Consensus 118 Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~-~l~~~~~~~~~GG~~ 196 (414)
T PTZ00280 118 REYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGY-VIGSSIKHIPLAGRD 196 (414)
T ss_pred HHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCE-EcccceEEecCcHHH
Confidence 9998777654 489999999999999988733211 1 2669999999999998764211 111 11111
Q ss_pred CccCHHH----------HHHHHHHHHHhhhhcCCCcee-------------EEEecceeccCCCCeeEEEEecHHHHH--
Q 047849 272 LSKDRLA----------LQRLREAAEKAKIELSSTTQT-------------DINLPFITADASGAKHLNITLTRSKFE-- 326 (651)
Q Consensus 272 ~~~~~~~----------~~~L~~~~e~~K~~Ls~~~~~-------------~i~i~~~~~~~~g~~~~~~~itr~~fe-- 326 (651)
++..-.. ....+..++.+|+.++..... .........+..++....+.|..+.|.
T Consensus 197 lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~ 276 (414)
T PTZ00280 197 ITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGP 276 (414)
T ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCc
Confidence 1100000 001234577777776532110 000001111111112345677777663
Q ss_pred -HHHHHHH------HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhc
Q 047849 327 -TLVNNLI------ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFG 378 (651)
Q Consensus 327 -~l~~~~~------~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~ 378 (651)
-+++|-+ ..+.++|.+.|.++..+ ..-.+.|+|+||+|.+|.+.+.|++.+.
T Consensus 277 E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 277 EMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred ccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 3444422 14567777777775432 2234679999999999999999998885
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.14 E-value=8.7e-10 Score=115.99 Aligned_cols=198 Identities=12% Similarity=0.147 Sum_probs=113.8
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHc---------CCceEEeecchHHHhhhhcccc-----CCCeEEEEEeCCcceE
Q 047849 189 SVSKAVITVPAYFNDAQRQATKDAGRIA---------GLDVQRIINEPTAASLSYGMNN-----KEGLIAVFDLGGGTFD 254 (651)
Q Consensus 189 ~~~~~VITVPa~f~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AAAl~y~~~~-----~~~~vlVvD~GggT~D 254 (651)
.+..+|+..|..+...+|+.+++..... -+..+.+++||.+|.+.+..+. ....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4567999999999888999998876532 2355789999999988875532 2238999999999999
Q ss_pred EEEEEEecccccccCCCCccCHHHHHHHHHHH-HHhhhhcCCC-ceeEEEecc-eeccCCCCeeE--EEEecHHHHHHHH
Q 047849 255 VSILEISNGVFEDEGIDLSKDRLALQRLREAA-EKAKIELSST-TQTDINLPF-ITADASGAKHL--NITLTRSKFETLV 329 (651)
Q Consensus 255 vsv~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-e~~K~~Ls~~-~~~~i~i~~-~~~~~~g~~~~--~~~itr~~fe~l~ 329 (651)
+.++. ++.+... .. ...+..+..+.+.. +......... ....-.++. +..+. ....+ .+.|+ +..+..
T Consensus 181 ~~~~~--~~~~~~~-~s-~s~~~G~~~~~~~I~~~i~~~~g~~~~~~~~~i~~~l~~g~-~~~~~gk~~di~--~~~~~~ 253 (320)
T TIGR03739 181 WLVAR--GMRLVQK-RS-GSVNGGMSDIYRLLAAEISKDIGTPAYRDIDRIDLALRTGK-QPRIYQKPVDIK--RCLELA 253 (320)
T ss_pred eehcc--CCEEccc-cc-CCchhHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHhCC-ceeecceecCch--HHHHHH
Confidence 98774 2222110 00 01223344443332 2222222221 000001111 11110 00000 12222 222233
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC-CCCcCCccchheehhHHHh
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS-PSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~-~~~~~~p~~aVA~GAa~~a 399 (651)
+..++++...+.+.+ + ...+++.|+|+||++. .+++.|++.|+.. +....||..|.|+|-..+|
T Consensus 254 ~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 254 ETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 334444433333333 1 2346889999999986 6789999999763 3456899999999987765
No 40
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.14 E-value=8e-10 Score=117.96 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcCCceEEeecchHHHhhhhc-----cccC--CC-eEEEEEeCCcceEEEEEEEeccccc----ccCC
Q 047849 203 DAQRQATKDAGRIAGLDVQRIINEPTAASLSYG-----MNNK--EG-LIAVFDLGGGTFDVSILEISNGVFE----DEGI 270 (651)
Q Consensus 203 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~-----~~~~--~~-~vlVvD~GggT~Dvsv~~~~~~~~~----~~~~ 270 (651)
....+.+.++++.||+++..+..+|.|.+-.+. .... .. +++++|+|++++++++++-+.-.|. ..+.
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~~r~i~~G~~ 221 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLFTREVPFGTR 221 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEEEEEeechHH
Confidence 456788899999999999999999999986663 2211 22 4999999999999999974433332 1111
Q ss_pred CCccCH-HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc--
Q 047849 271 DLSKDR-LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDA-- 347 (651)
Q Consensus 271 ~~~~~~-~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a-- 347 (651)
++..+- ..+..-...||+.|...+... + .-.+++++.++++...|.+.|+-.
T Consensus 222 ~i~~~i~~~~~~~~~~Ae~~k~~~~~~~-----------------~--------~~~~~~~~~~~~l~~eI~~~l~~~~~ 276 (348)
T TIGR01175 222 QLTSELSRAYGLNPEEAGEAKQQGGLPL-----------------L--------YDPEVLRRFKGELVDEIRRSLQFFTA 276 (348)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcCCCCC-----------------c--------hhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 111110 111223467888887532111 0 012456677777777777777532
Q ss_pred CCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC-------------------cCCccchheehhHHHh
Q 047849 348 NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK-------------------GVNPDEAVALGAAIQG 399 (651)
Q Consensus 348 ~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~-------------------~~~p~~aVA~GAa~~a 399 (651)
......++.|+|+||+++++.+.+.+++.|+.++.. ..+|..++|.|+|+++
T Consensus 277 ~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 277 QSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred CCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhhhHHHHHHhhHhhcC
Confidence 223446899999999999999999999999854321 1345667788887764
No 41
>PTZ00452 actin; Provisional
Probab=99.12 E-value=5.4e-09 Score=112.25 Aligned_cols=293 Identities=15% Similarity=0.120 Sum_probs=164.1
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC---------cEEEcHhHHhhhhhCCCchhhhhh
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPTNTLFGTK 125 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~K 125 (651)
.+...|-||+|+.++++++..+..|.++ +||+|...++. ..++|+.|.... ....+
T Consensus 3 ~~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~~~~l- 67 (375)
T PTZ00452 3 AQYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------GVLAI- 67 (375)
T ss_pred CCCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhccc------cCcEE-
Confidence 3445789999999999999988888754 37777664321 234454442100 00000
Q ss_pred hhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH
Q 047849 126 RLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 126 r~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q 205 (651)
..|+ . +|..... +.+..+++|+....- .....-..+++|-|...+..+
T Consensus 68 -----------------~~Pi-----~--------~G~I~dw-d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~ 115 (375)
T PTZ00452 68 -----------------KEPI-----Q--------NGIINSW-DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFN 115 (375)
T ss_pred -----------------cccC-----c--------CCEEcCH-HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHH
Confidence 0010 1 1122222 233345555432211 122233568999999999999
Q ss_pred HHHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEe----cccc--cccCCCCccCHHH
Q 047849 206 RQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEIS----NGVF--EDEGIDLSKDRLA 278 (651)
Q Consensus 206 r~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~----~~~~--~~~~~~~~~~~~~ 278 (651)
|+.+.+.. +..+++.+.+.+.|.+++++++.. +-||+|+|.+.++++-+.-+ .... ...|.+++..-..
T Consensus 116 Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~----tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~ 191 (375)
T PTZ00452 116 RERMTQIMFETFNTPCLYISNEAVLSLYTSGKT----IGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQ 191 (375)
T ss_pred HHHHHHHHhhccCCceEEEechHHHHHHHCCCc----eeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHH
Confidence 98887765 556888899999999999887643 56999999999999866411 1100 0111111110000
Q ss_pred HH----------HHHHHHHHhhhhcCCCcee---EE-------EecceeccCCCCeeEEEEecHHHH---HHHHHHHH--
Q 047849 279 LQ----------RLREAAEKAKIELSSTTQT---DI-------NLPFITADASGAKHLNITLTRSKF---ETLVNNLI-- 333 (651)
Q Consensus 279 ~~----------~L~~~~e~~K~~Ls~~~~~---~i-------~i~~~~~~~~g~~~~~~~itr~~f---e~l~~~~~-- 333 (651)
+. .-...++.+|+.++-.... .. .....+.-.+ .-.+.+..+.| |-+++|-+
T Consensus 192 lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD---g~~i~l~~er~~~~E~LF~P~~~g 268 (375)
T PTZ00452 192 ILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD---GNILTIKSQKFRCSEILFQPKLIG 268 (375)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC---CCEEEeehHHhcCcccccChhhcC
Confidence 00 0022356666665422100 00 0000011111 12456666665 23334432
Q ss_pred ---HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CCCcCCccchheehhHHHhh
Q 047849 334 ---ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 334 ---~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~~~~~p~~aVA~GAa~~a~ 400 (651)
..+.++|.+.+..+..+ ..-.+.|+|+||+|.+|.+.+.|++.+.. . +..+.++..++=+|++++|.
T Consensus 269 ~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 269 LEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred CCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 23566777777765432 23347899999999999999999988731 1 22344666788889999887
Q ss_pred h
Q 047849 401 I 401 (651)
Q Consensus 401 ~ 401 (651)
.
T Consensus 349 l 349 (375)
T PTZ00452 349 L 349 (375)
T ss_pred c
Confidence 4
No 42
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.09 E-value=4.5e-09 Score=114.11 Aligned_cols=284 Identities=18% Similarity=0.229 Sum_probs=160.5
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC----cEEEcHhHHhhhhhCCCchhhhhhhhhCCCC
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG----ELLVGTPAKRQAVTNPTNTLFGTKRLIGRKF 132 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~----~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~ 132 (651)
..+|-||+|+.++++++..+..|..+ +||+++...+. ..++|..+...
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~-------------------- 55 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP-------------------- 55 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT--------------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc--------------------
Confidence 45789999999999999876667654 48888764433 35677663220
Q ss_pred CChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHH
Q 047849 133 DDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDA 212 (651)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~A 212 (651)
...+.+.. + + .++.... -+....+++++..... .....-..++++.|..++..+|+.+.+.
T Consensus 56 ----------~~~~~~~~-p-----~-~~g~i~~-~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 56 ----------RSNLELRS-P-----I-ENGVIVD-WDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp ----------GTGEEEEE-S-----E-ETTEESS-HHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred ----------hhheeeee-e-----c-ccccccc-cccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhh
Confidence 00011100 0 0 1122222 2344455555544321 1122335799999999999999887766
Q ss_pred H-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc----------------------ccC
Q 047849 213 G-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE----------------------DEG 269 (651)
Q Consensus 213 a-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~----------------------~~~ 269 (651)
+ +..|++.+.++++|.+|+++++.. +-||||+|.+.+.++-+. ++-.+. ..+
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~----tglVVD~G~~~t~v~pV~-dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~ 191 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT----TGLVVDIGYSSTSVVPVV-DGYVLPHSIKRSPIGGDDLTEYLKELLKERN 191 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS----SEEEEEESSS-EEEEEEE-TTEE-GGGBEEES-SHHHHHHHHHHHHHHT-
T ss_pred hhcccccceeeeeecccccccccccc----cccccccceeeeeeeeee-eccccccccccccccHHHHHHHHHHHHHhhc
Confidence 4 567999999999999999888755 569999999999998764 111110 111
Q ss_pred CCCc------------cCHHHHHHHHHHHHHhhhhcCC---------------CceeEEEecceeccCCCCeeEEEEecH
Q 047849 270 IDLS------------KDRLALQRLREAAEKAKIELSS---------------TTQTDINLPFITADASGAKHLNITLTR 322 (651)
Q Consensus 270 ~~~~------------~~~~~~~~L~~~~e~~K~~Ls~---------------~~~~~i~i~~~~~~~~g~~~~~~~itr 322 (651)
..+. ........-...++.+|+.+.. .....+.++ +| ..+.+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP------dg---~~i~~~~ 262 (393)
T PF00022_consen 192 IQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP------DG---QTIILGK 262 (393)
T ss_dssp SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T------TS---SEEEEST
T ss_pred cccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc------cc---ccccccc
Confidence 1100 0000001112223344433311 111122221 11 2556665
Q ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCC--CCCeEEEecCccCcHhHHHHHHHHhcC-----
Q 047849 323 SKFETLVNNLIE----------------RTRAPCKNCLKDANITTK--DVDEVLLVGGMTRVPKVQEVVSEIFGK----- 379 (651)
Q Consensus 323 ~~fe~l~~~~~~----------------~i~~~i~~~l~~a~~~~~--~i~~VvLvGGss~ip~i~~~l~~~f~~----- 379 (651)
+.| .+.+.+++ .+.++|.+++..+..+.. -.+.|+|+||+|++|.+.+.|.+.+..
T Consensus 263 er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~ 341 (393)
T PF00022_consen 263 ERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSS 341 (393)
T ss_dssp HHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTT
T ss_pred ccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhcc
Confidence 554 23333322 467778888877653321 147899999999999999999988742
Q ss_pred -C--CCCcC-CccchheehhHHHhhhc
Q 047849 380 -S--PSKGV-NPDEAVALGAAIQGGIL 402 (651)
Q Consensus 380 -~--~~~~~-~p~~aVA~GAa~~a~~l 402 (651)
. +.... +|..++=.||+++|..-
T Consensus 342 ~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 342 TKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp STEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccceeccCchhhhhcccccceeeeccc
Confidence 1 22334 78999999999998853
No 43
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.07 E-value=1.6e-10 Score=121.34 Aligned_cols=166 Identities=18% Similarity=0.198 Sum_probs=82.8
Q ss_pred ceEEeecchHHHhhhhccccCC-CeEEEEEeCCcceEEEEEEEeccccc-ccC-CCCccCHHHHHHHHHHHHHhhhhcCC
Q 047849 219 DVQRIINEPTAASLSYGMNNKE-GLIAVFDLGGGTFDVSILEISNGVFE-DEG-IDLSKDRLALQRLREAAEKAKIELSS 295 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~~~~-~~vlVvD~GggT~Dvsv~~~~~~~~~-~~~-~~~~~~~~~~~~L~~~~e~~K~~Ls~ 295 (651)
..+.+++||.||.+.+..+-.+ +.+||+|+||+|+|++++.-.-.... ..+ .++ .-......+.+...+.+..++.
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~-Gvs~~~~~I~~~l~~~~~~~s~ 219 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEI-GVSDLYDAIAQALRSAGIDTSE 219 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTS-STHHHHHHHHHHTT--SBHHHH
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCch-hHHHHHHHHHHHHHHhcCCCcH
Confidence 4578999999999988766433 48999999999999999862100111 111 111 0111112222211111111110
Q ss_pred CceeEEEecceeccCCCCeeEEEEe----cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHH
Q 047849 296 TTQTDINLPFITADASGAKHLNITL----TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQE 371 (651)
Q Consensus 296 ~~~~~i~i~~~~~~~~g~~~~~~~i----tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~ 371 (651)
. .++.+........-+...+ ..+++.+.++..++++.+.|.+.+.+ ..+++.|+||||++ ..+.+
T Consensus 220 ~-----~~~~ii~~~~~~~~~~~~i~~~~~~~~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA--~ll~~ 288 (318)
T PF06406_consen 220 L-----QIDDIIRNRKDKGYLRQVINDEDVIDDVSEVIEEAVEELINRILRELGD----FSDIDRIFFVGGGA--ILLKD 288 (318)
T ss_dssp H-----HHHHHHHTTT-HHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S-S-SEEEEESTTH--HHHHH
T ss_pred H-----HHHHHHHhhhccceecccccchhhHHHHHHHHHHHHHHHHHHHHHHHhh----hccCCeEEEECCcH--HHHHH
Confidence 0 0000000000000000000 12334444444444444444444432 35688999999998 57889
Q ss_pred HHHHHhc---CCCCCcCCccchheehhH
Q 047849 372 VVSEIFG---KSPSKGVNPDEAVALGAA 396 (651)
Q Consensus 372 ~l~~~f~---~~~~~~~~p~~aVA~GAa 396 (651)
.|++.|+ ..+....||+.|-|+|-+
T Consensus 289 ~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 289 AIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 9999987 346678899999999965
No 44
>PTZ00281 actin; Provisional
Probab=99.04 E-value=5.6e-09 Score=112.35 Aligned_cols=203 Identities=16% Similarity=0.175 Sum_probs=121.5
Q ss_pred CCeEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEeccccc--
Q 047849 190 VSKAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFE-- 266 (651)
Q Consensus 190 ~~~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~-- 266 (651)
-..+++|-|..++..+|+.+.+. .+..+++-+.+...|.+++++++.. +-+|||+|.+.+.++-+.-+-....
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~----tglVVDiG~~~t~v~PV~dG~~~~~~~ 176 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT----TGIVMDSGDGVSHTVPIYEGYALPHAI 176 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCc----eEEEEECCCceEEEEEEEecccchhhe
Confidence 35688999999999999988775 5667889999999999999887642 6699999999999875532111100
Q ss_pred ----ccCCCCccCHHH-H---------HHHHHHHHHhhhhcCCCce------------eEEEecceeccCCCCeeEEEEe
Q 047849 267 ----DEGIDLSKDRLA-L---------QRLREAAEKAKIELSSTTQ------------TDINLPFITADASGAKHLNITL 320 (651)
Q Consensus 267 ----~~~~~~~~~~~~-~---------~~L~~~~e~~K~~Ls~~~~------------~~i~i~~~~~~~~g~~~~~~~i 320 (651)
..|.+++..-+. + ..-...++.+|+.+..... ......+... +| ..+.+
T Consensus 177 ~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LP--dg---~~i~i 251 (376)
T PTZ00281 177 LRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELP--DG---QVITI 251 (376)
T ss_pred eeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECC--CC---CEEEe
Confidence 011111000000 0 0012346677777542110 0000011111 11 23555
Q ss_pred cHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CC
Q 047849 321 TRSKF---ETLVNNLI-----ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PS 382 (651)
Q Consensus 321 tr~~f---e~l~~~~~-----~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~ 382 (651)
..+.| |-+++|-+ ..+.++|.+.+..+..+ ..-.+.|+|+||+|.+|.+.+.|+..+.. . +.
T Consensus 252 ~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~ 331 (376)
T PTZ00281 252 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII 331 (376)
T ss_pred eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEe
Confidence 55544 34444422 14556677777665332 12236899999999999999999888741 1 22
Q ss_pred CcCCccchheehhHHHhhh
Q 047849 383 KGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 383 ~~~~p~~aVA~GAa~~a~~ 401 (651)
.+.++..++=+|++++|..
T Consensus 332 ~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 332 APPERKYSVWIGGSILASL 350 (376)
T ss_pred cCCCCceeEEECcccccCc
Confidence 3456778889999998874
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.98 E-value=5.9e-09 Score=110.77 Aligned_cols=196 Identities=20% Similarity=0.237 Sum_probs=112.2
Q ss_pred HHHHHHHhhCCCCCeEEEEec---CC-------------CCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccc----
Q 047849 178 MKETAESYLGKSVSKAVITVP---AY-------------FNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN---- 237 (651)
Q Consensus 178 l~~~a~~~~~~~~~~~VITVP---a~-------------f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~---- 237 (651)
+.-.+++++..++.++++-.= .. ......+...++++.|||++..+--+|.|.+-.|...
T Consensus 94 I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~ 173 (340)
T PF11104_consen 94 IRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQL 173 (340)
T ss_dssp HHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTS
T ss_pred HHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhC
Confidence 455677787766665443211 00 0134467778999999999988877888877665442
Q ss_pred c-C-C-CeEEEEEeCCcceEEEEEEEecccccccCCCCccCH------HHHHHHHHHHHHhhhhcCCCceeEEEecceec
Q 047849 238 N-K-E-GLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDR------LALQRLREAAEKAKIELSSTTQTDINLPFITA 308 (651)
Q Consensus 238 ~-~-~-~~vlVvD~GggT~Dvsv~~~~~~~~~~~~~~~~~~~------~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~ 308 (651)
. . . +.++++|+|+.++.+.+++-+.-.|... +.+..+. ..+..-..++|+.|..-+-..
T Consensus 174 ~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f~R~-i~~G~~~l~~~i~~~~~i~~~~Ae~~k~~~~l~~----------- 241 (340)
T PF11104_consen 174 PDEEDAETVALVDIGASSTTVIIFQNGKPIFSRS-IPIGGNDLTEAIARELGIDFEEAEELKRSGGLPE----------- 241 (340)
T ss_dssp T----T-EEEEEEE-SS-EEEEEEETTEEEEEEE-ES-SHHHHHHHHHHHTT--HHHHHHHHHHT---------------
T ss_pred CcccccceEEEEEecCCeEEEEEEECCEEEEEEE-EeeCHHHHHHHHHHhcCCCHHHHHHHHhcCCCCc-----------
Confidence 1 1 1 3799999999999999987444333311 1111110 111122466777776421100
Q ss_pred cCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC---
Q 047849 309 DASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKD--ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK--- 383 (651)
Q Consensus 309 ~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~--a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~--- 383 (651)
+...+.+++.++++...|++.++- .......|+.|+|+||++++|.|.+.|++.++.++..
T Consensus 242 --------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p 307 (340)
T PF11104_consen 242 --------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINP 307 (340)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--G
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcCh
Confidence 223456677777777777777662 2334568999999999999999999999999854321
Q ss_pred ------c----------CCccchheehhHHHh
Q 047849 384 ------G----------VNPDEAVALGAAIQG 399 (651)
Q Consensus 384 ------~----------~~p~~aVA~GAa~~a 399 (651)
+ ..|..++|.|.|+.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 308 FKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp GGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 1 136778999999864
No 46
>PTZ00004 actin-2; Provisional
Probab=98.96 E-value=4.4e-08 Score=105.60 Aligned_cols=287 Identities=14% Similarity=0.136 Sum_probs=162.1
Q ss_pred CcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEeeCC---------cEEEcHhHHhhhhhCCCchhhhhhhh
Q 047849 57 NDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFNQKG---------ELLVGTPAKRQAVTNPTNTLFGTKRL 127 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~~~~---------~~~vG~~A~~~~~~~p~~~i~~~Kr~ 127 (651)
...|-||+||.++++++..+..|.++ +||+++..++. ..++|+.+.... .. ..+
T Consensus 6 ~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~-~~l--- 68 (378)
T PTZ00004 6 TNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKR-----GI-LTL--- 68 (378)
T ss_pred CCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhccc-----cc-ceE---
Confidence 34689999999999999877777654 37777663321 234555443210 00 000
Q ss_pred hCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhC--CCCCeEEEEecCCCCHHH
Q 047849 128 IGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLG--KSVSKAVITVPAYFNDAQ 205 (651)
Q Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~--~~~~~~VITVPa~f~~~q 205 (651)
..|+ . +|..... +....+++++.. ..++ .....+++|-|..++..+
T Consensus 69 ---------------~~Pi-----~--------~G~i~d~-d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~ 116 (378)
T PTZ00004 69 ---------------KYPI-----E--------HGIVTNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKAN 116 (378)
T ss_pred ---------------cccC-----c--------CCEEcCH-HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHH
Confidence 0111 1 1122222 334445555322 2232 233468899999999999
Q ss_pred HHHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEec----ccc--cccCCCCccCHHH
Q 047849 206 RQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISN----GVF--EDEGIDLSKDRLA 278 (651)
Q Consensus 206 r~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~----~~~--~~~~~~~~~~~~~ 278 (651)
|+.+.+.+ +..|++.+.++++|.+|+++++. .+-+|+|+|.+.++++-+.-+- ... ...|.+++..-+.
T Consensus 117 r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~ 192 (378)
T PTZ00004 117 REKMTQIMFETHNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMK 192 (378)
T ss_pred HHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----ceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHH
Confidence 98776654 56799999999999999988764 2669999999999998764110 000 0111111000000
Q ss_pred ----------HHHHHHHHHHhhhhcCCCce-------------eEEEecceeccCCCCeeEEEEecHHHH---HHHHHHH
Q 047849 279 ----------LQRLREAAEKAKIELSSTTQ-------------TDINLPFITADASGAKHLNITLTRSKF---ETLVNNL 332 (651)
Q Consensus 279 ----------~~~L~~~~e~~K~~Ls~~~~-------------~~i~i~~~~~~~~g~~~~~~~itr~~f---e~l~~~~ 332 (651)
...-...++..|+.+..... ......+... +| -.+.+..+.| |-+++|-
T Consensus 193 lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP--dg---~~i~l~~er~~~~E~LF~P~ 267 (378)
T PTZ00004 193 ILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP--DG---TIITVGSERFRCPEALFQPS 267 (378)
T ss_pred HHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC--CC---CEEEEcHHHeeCcccccChh
Confidence 00012335666666532110 0000011111 11 2345555554 2344553
Q ss_pred ------HHHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CCCcCCccchheehhH
Q 047849 333 ------IERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PSKGVNPDEAVALGAA 396 (651)
Q Consensus 333 ------~~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~~~~~p~~aVA~GAa 396 (651)
...+.++|.+++.++..+ ..-...|+|+||+|.+|.+.+.|...+.. . +....++..++=+||+
T Consensus 268 ~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggs 347 (378)
T PTZ00004 268 LIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGS 347 (378)
T ss_pred hcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcc
Confidence 234566777777765432 22346899999999999999999988741 1 2234567788888999
Q ss_pred HHhhh
Q 047849 397 IQGGI 401 (651)
Q Consensus 397 ~~a~~ 401 (651)
++|..
T Consensus 348 ilas~ 352 (378)
T PTZ00004 348 ILSSL 352 (378)
T ss_pred cccCc
Confidence 88764
No 47
>PTZ00466 actin-like protein; Provisional
Probab=98.91 E-value=6.1e-08 Score=104.25 Aligned_cols=203 Identities=14% Similarity=0.117 Sum_probs=121.8
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHH-HHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEec----cc
Q 047849 190 VSKAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISN----GV 264 (651)
Q Consensus 190 ~~~~VITVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~----~~ 264 (651)
-..+++|-|..++..+|+.+.+.+ +..+++.+.+.+.|.+|+++++.. +-+|||+|.+.+.++-+.-+- ..
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~----tglVVD~G~~~t~v~PV~~G~~~~~~~ 181 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKT----NGTVLDCGDGVCHCVSIYEGYSITNTI 181 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCc----eEEEEeCCCCceEEEEEECCEEeecce
Confidence 346889999999999999886654 557888899999999999887642 679999999999997654110 00
Q ss_pred c--cccCCCCccCHHH----------HHHHHHHHHHhhhhcCCCce-----------eEEEecceeccCCCCeeEEEEec
Q 047849 265 F--EDEGIDLSKDRLA----------LQRLREAAEKAKIELSSTTQ-----------TDINLPFITADASGAKHLNITLT 321 (651)
Q Consensus 265 ~--~~~~~~~~~~~~~----------~~~L~~~~e~~K~~Ls~~~~-----------~~i~i~~~~~~~~g~~~~~~~it 321 (651)
. ...|.+++..-+. ...-+..++.+|+.+.-... ......+... +...+.+.
T Consensus 182 ~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LP-----dg~~i~l~ 256 (380)
T PTZ00466 182 TRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILP-----DGSQILIG 256 (380)
T ss_pred eEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECC-----CCcEEEEc
Confidence 0 0111111110000 00112345666766532100 0000111111 11245566
Q ss_pred HHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEecCccCcHhHHHHHHHHhcC----C----CCC
Q 047849 322 RSKF---ETLVNNLI-----ERTRAPCKNCLKDANIT--TKDVDEVLLVGGMTRVPKVQEVVSEIFGK----S----PSK 383 (651)
Q Consensus 322 r~~f---e~l~~~~~-----~~i~~~i~~~l~~a~~~--~~~i~~VvLvGGss~ip~i~~~l~~~f~~----~----~~~ 383 (651)
.+.| |-+++|-+ ..+.++|.+.+.++..+ ..-...|+|+||+|.+|.+.+.|+..+.. . +..
T Consensus 257 ~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~ 336 (380)
T PTZ00466 257 SERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA 336 (380)
T ss_pred hHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEec
Confidence 6655 33444421 13556666777665432 22347899999999999999999988732 1 223
Q ss_pred cCCccchheehhHHHhhh
Q 047849 384 GVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 384 ~~~p~~aVA~GAa~~a~~ 401 (651)
+.++..++=+|++++|..
T Consensus 337 ~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 337 PPERKFSTFIGGSILASL 354 (380)
T ss_pred CCCCceeEEECchhhcCc
Confidence 456777888899998874
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=4.7e-07 Score=91.33 Aligned_cols=270 Identities=19% Similarity=0.255 Sum_probs=151.0
Q ss_pred cEEEEEcCCceEEEEEEeC-CceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCCCCCChH
Q 047849 58 DIIGIDLGTTNSCVALMEG-KNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGRKFDDPQ 136 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~-~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~~~~~~~ 136 (651)
..||||+|++..+++.... |+.--+. ......+|--+. .+| ...+++.+...+|+++.+.--.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe-~y~~~~lp~~iv--~dg-----------~ivd~~av~~~Lk~ala~~gi~-- 74 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLE-KYASEPLPENIV--ADG-----------KIVDYDAVASALKRALAKLGIK-- 74 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeee-eeeecccCcccc--ccC-----------CcccHHHHHHHHHHHHHhcCcc--
Confidence 5899999999999987763 2221111 111122222111 121 2345666777778877543211
Q ss_pred HHHHhhcceeEEEECCCCCeEEEeCCeeeC-hhhHHHHHHHH-HHHHHHHhhCCCCC-----eEEEEecCCCC-------
Q 047849 137 TQKEMQMVSYKIVRAPNGDAWVEANGQQYS-PSQIGAFVLTK-MKETAESYLGKSVS-----KAVITVPAYFN------- 202 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s-~eev~a~~L~~-l~~~a~~~~~~~~~-----~~VITVPa~f~------- 202 (651)
.+......| +...+. +.++ |.++...=|+. +...|..++..++. -.+++-++.=.
T Consensus 75 ~k~aa~AVP--------~s~ait---k~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll 143 (354)
T COG4972 75 SKNAATAVP--------GSAAIT---KTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLL 143 (354)
T ss_pred hhhhhhhcC--------ccceee---EEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEE
Confidence 011111111 111111 1111 22233322332 33456666664443 24555554443
Q ss_pred ----HHHHHHHHHHHHHcCCceEEeecchHHHhhhhccc-----cCCC--eEEEEEeCCcceEEEEEEEecccccccCCC
Q 047849 203 ----DAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMN-----NKEG--LIAVFDLGGGTFDVSILEISNGVFEDEGID 271 (651)
Q Consensus 203 ----~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~-----~~~~--~vlVvD~GggT~Dvsv~~~~~~~~~~~~~~ 271 (651)
.+......+|.+.|||....+--|.-|.--+|..- .... +++|+|+|+..+.+.++.-+...|.+. ..
T Consensus 144 ~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly~r~-~~ 222 (354)
T COG4972 144 VATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILYTRE-VP 222 (354)
T ss_pred EEeehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeeeEee-cc
Confidence 22345567899999999988888888887777622 1222 689999999999999998555555421 11
Q ss_pred CccC------HHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 272 LSKD------RLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLK 345 (651)
Q Consensus 272 ~~~~------~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~ 345 (651)
+..+ .+.+.--...++.+|....-.. +.-.++..++++.+.+.|++.|+
T Consensus 223 ~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~-------------------------~y~~~vl~~f~~~l~~ei~Rslq 277 (354)
T COG4972 223 VGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPT-------------------------DYGSEVLRPFLGELTQEIRRSLQ 277 (354)
T ss_pred CcHHHHHHHHHHHhCCChhHhHHHHhCCCCCC-------------------------chhHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111112345666665443221 12245666666666666666665
Q ss_pred H--cCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC
Q 047849 346 D--ANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS 380 (651)
Q Consensus 346 ~--a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~ 380 (651)
- +.-...+|+.|+|.||++.+-.+.+++.+.++.+
T Consensus 278 fy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 278 FYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 3 2224568999999999999999999999998754
No 49
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.75 E-value=2.7e-07 Score=93.71 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC-CcCCccchheehhHHHhhh
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS-KGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~-~~~~p~~aVA~GAa~~a~~ 401 (651)
++++..+...+...+...+++.++. +.|+|+||.++.|.+++.+++.++.++. .+.+|..+-|+|||++|..
T Consensus 216 edI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 216 NMVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3444455555554444444443332 3699999999999999999999998876 5778999999999999864
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.71 E-value=1.8e-07 Score=94.76 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-eEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHH
Q 047849 325 FETLVNNLIERTRAPCKNCLKDANITTKDVD-EVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~-~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~ 398 (651)
.++++..+++.+...+.+.+...+ ++ .|+|+||.++.|++.+.+++.++.++..+.+|..+.|+|||++
T Consensus 179 ~~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 179 KEDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 356777777777777777665543 44 7999999999999999999999999999999999999999973
No 51
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.70 E-value=2.4e-07 Score=98.90 Aligned_cols=147 Identities=15% Similarity=0.173 Sum_probs=86.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH------------cCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEE
Q 047849 191 SKAVITVPAYFNDAQRQATKDAGRI------------AGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~ 258 (651)
.-.+||.+... ++.++++++. ||+++..++. |.|++.+...+.++..++++|+||||++++++
T Consensus 89 ~ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLseEke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 89 GAVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSEERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred cEEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhhhccCceEEEEeCCCceEEEEE
Confidence 45788887654 5556666665 6777666666 99999877755333399999999999999999
Q ss_pred EEeccccc----ccCCCCccCH--------HHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCeeEEEEecHHHHH
Q 047849 259 EISNGVFE----DEGIDLSKDR--------LALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKHLNITLTRSKFE 326 (651)
Q Consensus 259 ~~~~~~~~----~~~~~~~~~~--------~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe 326 (651)
+-+.-.+. -.|..++.|. ...+++.+. .-.. ...--.++.+++.
T Consensus 164 ~~G~l~~T~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~---~~~~---------------------~~~G~~~~~~~L~ 219 (475)
T PRK10719 164 DAGKVIDTACLNVGGRLIETDSQGRVTYISPPGQMILDE---LGLA---------------------ITDGRSLTGEQLQ 219 (475)
T ss_pred ECCEEEEEEEEecccceEEECCCCCEEEEChHHHHHHHH---cCCC---------------------ccccccCCHHHHH
Confidence 74432222 2222222221 111222211 1110 1122346667788
Q ss_pred HHHHHHHHHHHHHHHHH-------HHH-cCCC-CCCCCeEEEecCccCc
Q 047849 327 TLVNNLIERTRAPCKNC-------LKD-ANIT-TKDVDEVLLVGGMTRV 366 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~-------l~~-a~~~-~~~i~~VvLvGGss~i 366 (651)
.+|+-..+-+.+.+... |-. ..+. ...++.|.+.||-+..
T Consensus 220 ~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 220 QVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred HHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 87777666666655411 111 1222 3568999999998764
No 52
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.52 E-value=2.6e-06 Score=97.93 Aligned_cols=91 Identities=19% Similarity=0.235 Sum_probs=68.4
Q ss_pred eeEEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC--------
Q 047849 314 KHLNITLTRSKFETLVN---NLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS-------- 382 (651)
Q Consensus 314 ~~~~~~itr~~fe~l~~---~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~-------- 382 (651)
.+..+.|+..++...+- -.+..++..+-+++.. .+.|.++|+|--||+|.||..+++..+.++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~-----Y~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHH-----YDCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHH-----hCCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 35668899999988774 5667777777777766 4567999999999999999999999865432
Q ss_pred ------------CcCCccchheehhHHHhhhccCCccee
Q 047849 383 ------------KGVNPDEAVALGAAIQGGILRGDVKEL 409 (651)
Q Consensus 383 ------------~~~~p~~aVA~GAa~~a~~l~~~~~~~ 409 (651)
+-.||...||.||.+.......+..++
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF 842 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNF 842 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCc
Confidence 234899999999988665443233333
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.45 E-value=4e-06 Score=88.45 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 326 ETLVNNLIERTRAPCKN-CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~-~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
++++..+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|+.+-|+|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 44455555555444442 34443322 3699999999999999999999999999999999999999999985
No 54
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.41 E-value=1.4e-05 Score=82.33 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 324 KFETLVNNLIERTRAPCKN-CLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 324 ~fe~l~~~~~~~i~~~i~~-~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
..|+++..+...+...+-. +++.-.+.+ -|+|+||.+....+.+++++.++.++.++.+|...-|+|||+++...
T Consensus 316 ~~EdI~AGl~~Sv~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 316 SPEDILAGLAYSVAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhhh
Confidence 3467777777666655544 555543322 39999999999999999999999999999999999999999998753
No 55
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.23 E-value=0.00018 Score=74.03 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCceEEEEEEeCCceEEEeCCCCCccceEEEEEe--------eCCcEEEcHhHHhhhhhCCCchhhhhhhh
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKNPKVIENSEGSRTTPSVVAFN--------QKGELLVGTPAKRQAVTNPTNTLFGTKRL 127 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~~~ii~~~~g~~~~PS~V~~~--------~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~ 127 (651)
....|-||.|+..+.++|....-|..+. ||++... +.+..+++..|...- ++...+..-+|
T Consensus 10 Ev~alViDpGS~~traGyaged~Pk~il--------PS~~G~~tk~~~d~~~~~~~y~~~~ai~~p-r~gmEv~~~i~-- 78 (426)
T KOG0679|consen 10 EVSALVIDPGSHTTRAGYAGEDSPKAIL--------PSVYGKVTKTDGDAEDKKGYYVDENAIHVP-RPGMEVKTPIK-- 78 (426)
T ss_pred ccceEEEeCCCceEeccccCCCCccccc--------cceeeeeecccCccccccceEeechhccCC-CCCCeeccchh--
Confidence 3457899999999999999887777553 7777641 011234555443210 00000111111
Q ss_pred hCCCCCChHHHHHhhcceeEEEECCCCCeEEEeCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHH
Q 047849 128 IGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQ 207 (651)
Q Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~ 207 (651)
+| - +.-=++..+.++|..+.-. +....-.-++||-|++=+.+.|+
T Consensus 79 -------------------------nG--------l-v~dWD~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Re 123 (426)
T KOG0679|consen 79 -------------------------NG--------L-VEDWDLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANRE 123 (426)
T ss_pred -------------------------cC--------C-cccHHHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHH
Confidence 11 1 1111344455555553221 12233346899999988888888
Q ss_pred HHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 208 ATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 208 ~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.+.+. .+...++...|..+|+++|++-+.. +.||+|+|++++.++-+.
T Consensus 124 k~~ElmFE~~nvPAf~L~k~~v~~AFA~Grs----talVvDiGa~~~svsPV~ 172 (426)
T KOG0679|consen 124 KLTELMFEKLNVPAFYLAKTAVCTAFANGRS----TALVVDIGATHTSVSPVH 172 (426)
T ss_pred HHHHHHHhhcCCceEEEechHHHHHHhcCCC----ceEEEEecCCCceeeeee
Confidence 76655 5667888889999999999876632 789999999999999654
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.21 E-value=6.5e-05 Score=75.45 Aligned_cols=71 Identities=20% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-CC----CCCcCCccchheehhHHHh
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-KS----PSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-~~----~~~~~~p~~aVA~GAa~~a 399 (651)
++++..+...+...+...+++.+.. -+.|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 4455555555555554555543321 1369999999999999999999994 22 4456789999999999975
No 57
>PRK13317 pantothenate kinase; Provisional
Probab=97.98 E-value=0.00038 Score=71.30 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=42.7
Q ss_pred CCCeEEEec-CccCcHhHHHHHHHHh---cCCCCCcCCccchheehhHHHhh
Q 047849 353 DVDEVLLVG-GMTRVPKVQEVVSEIF---GKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 353 ~i~~VvLvG-Gss~ip~i~~~l~~~f---~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456999999 7999999999999988 56677889999999999999876
No 58
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=97.92 E-value=0.00065 Score=74.02 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=52.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 191 SKAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
..+++|-|..+...+|..+.+. .+...++.+.+..++.+++.+.+... .+.+|+|+|.+.++++=+-
T Consensus 107 ~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~--~~g~ViD~G~~~t~v~PV~ 174 (444)
T COG5277 107 HPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD--ETGLVIDSGDSVTHVIPVV 174 (444)
T ss_pred CceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC--CceEEEEcCCCceeeEeee
Confidence 4699999999999888776554 56667777788888888877665432 3679999999999999653
No 59
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.49 E-value=0.0036 Score=68.63 Aligned_cols=90 Identities=18% Similarity=0.220 Sum_probs=59.3
Q ss_pred eEEEEecHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCC---------
Q 047849 315 HLNITLTRSKFETLVNNL---IERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPS--------- 382 (651)
Q Consensus 315 ~~~~~itr~~fe~l~~~~---~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~--------- 382 (651)
++.+.|.-.++++.+-.. +......+-+++.. .+.|.++|+|--+|+|.+|..++...+.++.
T Consensus 742 d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yr 816 (1014)
T COG4457 742 DVPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYR 816 (1014)
T ss_pred ccceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEecccee
Confidence 344666666666555332 33333334444433 4567999999999999999999988754322
Q ss_pred -----------CcCCccchheehhHHHhhhccCCccee
Q 047849 383 -----------KGVNPDEAVALGAAIQGGILRGDVKEL 409 (651)
Q Consensus 383 -----------~~~~p~~aVA~GAa~~a~~l~~~~~~~ 409 (651)
+-.||...+|.||-+.+..+.-+..++
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF 854 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNF 854 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHHhhccCcce
Confidence 235899999999988776655444443
No 60
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.48 E-value=0.00055 Score=67.89 Aligned_cols=180 Identities=21% Similarity=0.213 Sum_probs=91.6
Q ss_pred HHHcCCceEEeecchHHHhhhhccccCCC-eEEEEEeCCcceEEEEEEEecccccc----cC--------CCCccCHHHH
Q 047849 213 GRIAGLDVQRIINEPTAASLSYGMNNKEG-LIAVFDLGGGTFDVSILEISNGVFED----EG--------IDLSKDRLAL 279 (651)
Q Consensus 213 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~~----~~--------~~~~~~~~~~ 279 (651)
-+..|.++.--=-|+.+|.+.......-+ .+.++|+||||+|.+++.-.+.+..- .| ..+..+
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~~iHlAGAG~mVTmlI~sELGl~---- 180 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVTAIHLAGAGNMVTMLINSELGLE---- 180 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EEEEEEE-SHHHHHHHHHHHCT-S----
T ss_pred HHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEEEEEecCCchhhHHHHHHhhCCC----
Confidence 34568888777889999998776665444 89999999999999999754433220 00 000011
Q ss_pred HHHHHHHHHhhhhcCC-----------CceeEEEecceeccCCCC-----eeEEEEec----HHHHHHHHHHHHHHH-HH
Q 047849 280 QRLREAAEKAKIELSS-----------TTQTDINLPFITADASGA-----KHLNITLT----RSKFETLVNNLIERT-RA 338 (651)
Q Consensus 280 ~~L~~~~e~~K~~Ls~-----------~~~~~i~i~~~~~~~~g~-----~~~~~~it----r~~fe~l~~~~~~~i-~~ 338 (651)
-+.-+|..|+-=-. .....+.-+.+..+.-+. .+..+.|+ -+++..+=+..-+++ ..
T Consensus 181 --d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lEkir~vRr~AK~kVFVt 258 (332)
T PF08841_consen 181 --DRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLEKIRSVRREAKEKVFVT 258 (332)
T ss_dssp ---HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHHHHHHHHHHhhhhhhHH
Confidence 13457777764210 011111111111110000 01122332 222222222221211 11
Q ss_pred HHHHHHHHc--CCCCCCCCeEEEecCccCcHhHHHHHHHHhcC--------CCCCcCCccchheehhHHH
Q 047849 339 PCKNCLKDA--NITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK--------SPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 339 ~i~~~l~~a--~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~--------~~~~~~~p~~aVA~GAa~~ 398 (651)
-.-++|++- .-+..+|+.|+|||||+.=--|-+++.+.+.. ++.-..-|..|||.|.++.
T Consensus 259 Na~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvls 328 (332)
T PF08841_consen 259 NALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLS 328 (332)
T ss_dssp HHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHh
Confidence 222333332 22346899999999999988888888888732 2333567999999999874
No 61
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.41 E-value=0.0069 Score=65.31 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=42.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHcCCceEEe---ecchHHHhhhhccc---cCCC-eEEEEEeCCcceEEEEEEE
Q 047849 193 AVITVPAYFNDAQRQATKDAGRIAGLDVQRI---INEPTAASLSYGMN---NKEG-LIAVFDLGGGTFDVSILEI 260 (651)
Q Consensus 193 ~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~AAAl~y~~~---~~~~-~vlVvD~GggT~Dvsv~~~ 260 (651)
+.||==+-=.+..|..+..-+..||==++.- =.|..-|+...+.. +... .|+=+|+||||+.+++++-
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEEC
Confidence 5666555556677777777777777433322 12444444322221 2223 8999999999999999873
No 62
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.38 E-value=0.00063 Score=71.38 Aligned_cols=71 Identities=13% Similarity=0.124 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc-----CCCCCcCCccchheehhHHHh
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG-----KSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~-----~~~~~~~~p~~aVA~GAa~~a 399 (651)
++++..+...+..-+...+.+.+ ..-+.|+|+||.++.+.+.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 357 eDIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 357 EDILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 34555555555555555555431 112479999999999999999999994 456788999999999999985
No 63
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.12 E-value=0.0035 Score=66.90 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=70.7
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHhhCCCCC-----eEEEEecCCCCHHHH-HHHHHHHHHcCCceEEeecchHHHhhhhc
Q 047849 162 GQQYSPSQIGAFVLTKMKETAESYLGKSVS-----KAVITVPAYFNDAQR-QATKDAGRIAGLDVQRIINEPTAASLSYG 235 (651)
Q Consensus 162 ~~~~s~eev~a~~L~~l~~~a~~~~~~~~~-----~~VITVPa~f~~~qr-~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~ 235 (651)
...+|..++++++-+-+.-.....+..+.+ .+|+-||-.|..... +.+.--....||....++-|..||.+..|
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 455677777777644444444555555544 589999999986664 45555577889999999999999998766
Q ss_pred cccCCCeEEEEEeCCcceEEEEEE
Q 047849 236 MNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 236 ~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
+. .-.|||+|+-+|.|+.++
T Consensus 274 ls----s~CVVdiGAQkTsIaCVE 293 (618)
T KOG0797|consen 274 LS----SACVVDIGAQKTSIACVE 293 (618)
T ss_pred cc----ceeEEEccCcceeEEEee
Confidence 65 458999999999999886
No 64
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=96.91 E-value=0.0099 Score=62.78 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=38.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEE
Q 047849 191 SKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVS 256 (651)
Q Consensus 191 ~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvs 256 (651)
..+++|=|..+...-|+.+.+..-.. |++-.+.-.- .|.+ |+.... +=+|+|+|.|-+++.
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g~t--tG~VvD~G~gvt~~v 160 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASGRT--TGLVVDSGDGVTHVV 160 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcCCe--eEEEEEcCCCceeee
Confidence 57999999999999998887654332 2333332222 3322 443322 459999999966544
No 65
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.78 E-value=0.0014 Score=63.70 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 325 FETLVNNLIERTRAPCKNCLKDANIT-TKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~~~-~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
..++++.+++.+.-.++..++...-. ...++.|+++||.++.|.+.+++.+.|+.++.+..+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 44555556655555555555543111 235789999999999999999999999987766555 88999999999874
No 66
>PRK15027 xylulokinase; Provisional
Probab=96.14 E-value=0.0097 Score=66.53 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=45.9
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|+++||+++++...+++.+.||.++....+.+++.++|||+.|+.-.+
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G 437 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAAN 437 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcC
Confidence 4789999999999999999999999999876667777889999999986544
No 67
>PLN02669 xylulokinase
Probab=95.99 E-value=0.017 Score=65.64 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 328 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+++.+++.+.=.++..++..+.. ..++.|+++||+|+.+.+.+++.+.||.++.+...+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555555555555554432 457899999999999999999999999987665555 6889999999985
No 68
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.84 E-value=0.016 Score=65.73 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=62.9
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHH
Q 047849 319 TLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 319 ~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~ 398 (651)
.-+|..+..+++.+++.+.=.++..++...-....++.|.++||.++++...+++.+.||.++.+..++ ++.++|||++
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHH
Confidence 335666677777777777666665555432112357899999999999999999999999988766555 5789999999
Q ss_pred hhhcc
Q 047849 399 GGILR 403 (651)
Q Consensus 399 a~~l~ 403 (651)
|+.-.
T Consensus 488 A~~~~ 492 (541)
T TIGR01315 488 GAKAA 492 (541)
T ss_pred HHHhc
Confidence 98643
No 69
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.43 E-value=0.026 Score=58.54 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC-CCCcCCccchheehhHH
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS-PSKGVNPDEAVALGAAI 397 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~-~~~~~~p~~aVA~GAa~ 397 (651)
+-..+++.+.|+......+.++.+. .++.+||.+ |.+-..|.+.+|.+ +..+..+.-+-|+||++
T Consensus 218 ~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 218 RIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 3344444455555544445544322 345556665 78888888888865 44555678888999986
No 70
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.32 E-value=0.034 Score=62.40 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++.+++.+.-.++..++... .....++.|.++||.++++.+.+++.+.||.++.... ..++.|+|||+.|+.-.+
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhcC
Confidence 34455555555444444443321 1122478999999999999999999999999886544 456889999999886443
No 71
>PRK04123 ribulokinase; Provisional
Probab=95.22 E-value=0.037 Score=62.93 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCc-cCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhc
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGM-TRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGs-s~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
++++.+++.+.-.++..++...-....++.|+++||. ++++.+.+++.+.||.++.+.. +.++.++|||+.|+.-
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~ 487 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVA 487 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHH
Confidence 4555555555544443333321112357899999999 9999999999999999885544 4568899999999863
No 72
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.21 E-value=0.032 Score=62.53 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++++.+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++.... ..++.|+|||+.|+.-.+
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~-~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPK-VTETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecC-CCcchHHHHHHHHHhhcC
Confidence 34444444444444444443321 1123478999999999999999999999999886544 456889999999886443
No 73
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.20 E-value=0.042 Score=61.39 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 325 FETLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
...+++.+++.+.-.++..++... .....++.|+++||.++.+.+.+++.+.||.++.... ..++.++|||+.|+.-.
T Consensus 361 ~~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 361 RADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhc
Confidence 334444444444444444433321 1113578999999999999999999999999876554 56688999999998654
Q ss_pred C
Q 047849 404 G 404 (651)
Q Consensus 404 ~ 404 (651)
+
T Consensus 440 g 440 (481)
T TIGR01312 440 G 440 (481)
T ss_pred C
Confidence 4
No 74
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.15 E-value=0.036 Score=61.68 Aligned_cols=77 Identities=21% Similarity=0.203 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 325 FETLVNNLIERTRAPCKNCL---KDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l---~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
-.++++.+++.+.-.++..+ ++.+ ...++.|.++||++++|...+++.+.||.++.+..++ ++.++|||+.|+.
T Consensus 364 ~~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~a~~ 440 (465)
T TIGR02628 364 RGHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHHHHH
Confidence 34455555655544444443 3332 1246899999999999999999999999988665554 6789999999986
Q ss_pred ccC
Q 047849 402 LRG 404 (651)
Q Consensus 402 l~~ 404 (651)
-.+
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 443
No 75
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.12 E-value=0.041 Score=61.88 Aligned_cols=78 Identities=21% Similarity=0.336 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANI-TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~-~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
..+++.+++.+.-.++..++...- ....++.|.++||.++++.+.+++.+.||.++.... ..++.++|||+.|+.-.+
T Consensus 378 ~~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 378 AHIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcC
Confidence 344455555544444444433210 112378999999999999999999999999886555 445789999999986444
No 76
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.01 E-value=0.045 Score=62.02 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCc-cCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGM-TRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGs-s~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
++++.+++.+.-.++..++...-....++.|+++||. ++.+.+.+++.+.||.++.+..++ ++.|+|||+.|+.-.+
T Consensus 409 ~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 409 LLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcC
Confidence 3444444444433333333321112357899999999 999999999999999988666654 5789999999886443
No 77
>PRK10331 L-fuculokinase; Provisional
Probab=94.92 E-value=0.046 Score=60.89 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 327 TLVNNLIERTRAPCKNCLKDAN-ITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~-~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
++++.+++.+.-.++..++... .....++.|.++||.++++...+++.+.||.++..... .++.++|||+.|+.-.+
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~-~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDD-AETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCc-ccchHHHHHHHHHHhcC
Confidence 3445555554444444443321 11235789999999999999999999999998865554 46889999999986443
No 78
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.75 E-value=0.056 Score=60.80 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 326 ETLVNNLIERTRAPCK----NCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~----~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
.++++.+++.+.-.++ ...+..+ ..++.|.++||.++.+...+++.+.||.++....++ ++.++|||+.|+.
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~ 448 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLK 448 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHH
Confidence 3445555544444433 3333233 257899999999999999999999999988665555 5889999999986
Q ss_pred ccC
Q 047849 402 LRG 404 (651)
Q Consensus 402 l~~ 404 (651)
-.+
T Consensus 449 ~~G 451 (505)
T TIGR01314 449 ALG 451 (505)
T ss_pred hcC
Confidence 443
No 79
>PLN02295 glycerol kinase
Probab=94.62 E-value=0.066 Score=60.30 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CC--CCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHH
Q 047849 325 FETLVNNLIERTRAPCKNCLKDA----NI--TTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a----~~--~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~ 398 (651)
-.++++.+++.+.-.++..++.. +. ....++.|.++||++++|.+.+++.+.||.++.... ..++.|+|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHH
Confidence 34455555555544444444432 21 223578999999999999999999999999885544 457889999999
Q ss_pred hhhccC
Q 047849 399 GGILRG 404 (651)
Q Consensus 399 a~~l~~ 404 (651)
|+.-.+
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 886443
No 80
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.60 E-value=0.054 Score=60.03 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.++||+++.+...+++.+.+|.++... +.++.|+|||+.|+.-.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999988543 356889999999886544
No 81
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.48 E-value=0.57 Score=47.99 Aligned_cols=19 Identities=32% Similarity=0.651 Sum_probs=17.2
Q ss_pred eEEEEEeCCcceEEEEEEE
Q 047849 242 LIAVFDLGGGTFDVSILEI 260 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~~ 260 (651)
.|+=+|+||||+..|++.-
T Consensus 146 ~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 146 RVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred EEEEEeccCCccceeeecc
Confidence 8899999999999999863
No 82
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.089 Score=57.74 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITT-KDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~-~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
+.+....++.+.-.++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+|.++.++.+++. ++.|||+.|+..++
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcC
Confidence 44444555555544445544433333 57889999999999999999999999999999888887 99999999998776
Q ss_pred C
Q 047849 405 D 405 (651)
Q Consensus 405 ~ 405 (651)
.
T Consensus 465 ~ 465 (516)
T KOG2517|consen 465 K 465 (516)
T ss_pred C
Confidence 4
No 83
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.35 E-value=0.075 Score=59.99 Aligned_cols=50 Identities=24% Similarity=0.323 Sum_probs=43.1
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhcc
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILR 403 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~ 403 (651)
.++.|+++||.++++...+++.+.||.++.+..++ ++.++|||+.|+.-.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~ 458 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGA 458 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHh
Confidence 47899999999999999999999999988766555 578999999988643
No 84
>PRK10854 exopolyphosphatase; Provisional
Probab=94.18 E-value=0.53 Score=52.96 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCceEEeecchHHHhhhh-ccccC---CCeEEEEEeCCcceEEEEEE
Q 047849 206 RQATKDAGRIAGLDVQRIINEPTAASLSY-GMNNK---EGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 206 r~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~---~~~vlVvD~GggT~Dvsv~~ 259 (651)
...+.++-+..|+++ ++|+..+=|.+.| +.... .++.+|+|+|||++.+++++
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEec
Confidence 444555666679998 6777766666655 32221 13689999999999999986
No 85
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.17 E-value=0.15 Score=49.25 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCCceEEeecchHHHhhh
Q 047849 205 QRQATKDAGRIAGLDVQRIINEPTAASLS 233 (651)
Q Consensus 205 qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~ 233 (651)
..+.+.++.+.|||++..++.+|.|++.+
T Consensus 158 ~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 158 AIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 47788999999999999999999999864
No 86
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.07 E-value=0.08 Score=58.93 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=42.5
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.++.|.++||+++++...+++.+.+|.++.... .++.++|||+.|+.-.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999885543 37889999999886444
No 87
>PRK13321 pantothenate kinase; Reviewed
Probab=93.83 E-value=2 Score=43.58 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=17.4
Q ss_pred EEEEEcCCceEEEEEEeCC
Q 047849 59 IIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~ 77 (651)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999865
No 88
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.60 E-value=0.18 Score=53.79 Aligned_cols=56 Identities=18% Similarity=0.388 Sum_probs=47.8
Q ss_pred HHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 345 KDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 345 ~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+..+......+.|++|||.|+-..|-+.|.+.||.++... +..++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 3456666678899999999999999999999999987765 7778899999998774
No 89
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=93.30 E-value=1.3 Score=49.56 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCceEEeecchHHHhhhh-cccc---CCCeEEEEEeCCcceEEEEEE
Q 047849 205 QRQATKDAGRIAGLDVQRIINEPTAASLSY-GMNN---KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 205 qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~---~~~~vlVvD~GggT~Dvsv~~ 259 (651)
....+.++-+..|+++ ++|+..+=|-+.| +... ..+..+|+|+|||++.+++++
T Consensus 93 ~~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 93 ADEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec
Confidence 3455666667789998 6777666666555 2222 113689999999999999986
No 90
>PRK13318 pantothenate kinase; Reviewed
Probab=93.17 E-value=5 Score=40.74 Aligned_cols=19 Identities=42% Similarity=0.789 Sum_probs=17.3
Q ss_pred EEEEEcCCceEEEEEEeCC
Q 047849 59 IIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~ 77 (651)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 7899999999999999854
No 91
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=92.89 E-value=2.2 Score=42.26 Aligned_cols=205 Identities=18% Similarity=0.196 Sum_probs=112.4
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHH-HHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEEEec--cc-
Q 047849 189 SVSKAVITVPAYFNDAQRQATKDA-GRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILEISN--GV- 264 (651)
Q Consensus 189 ~~~~~VITVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~--~~- 264 (651)
+-.++.+|=|.--....|+.|.+. .+.-||.-+.+.-...-+ -|+..-- .=+|+|-|.|-+-+.-+.-+- ..
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLt--LYAQGL~--tGvVvDSGDGVTHi~PVye~~~l~HL 175 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLT--LYAQGLL--TGVVVDSGDGVTHIVPVYEGFVLPHL 175 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHH--HHHhccc--ceEEEecCCCeeEEeeeecceehhhh
Confidence 334789999998888888877665 567788876554333222 2432211 348999999988776442110 00
Q ss_pred ---ccccCCCCccCHHHHHHH-------------HHHHHHhhhhcCCC-----------ceeEEEecceeccCCCCeeEE
Q 047849 265 ---FEDEGIDLSKDRLALQRL-------------REAAEKAKIELSST-----------TQTDINLPFITADASGAKHLN 317 (651)
Q Consensus 265 ---~~~~~~~~~~~~~~~~~L-------------~~~~e~~K~~Ls~~-----------~~~~i~i~~~~~~~~g~~~~~ 317 (651)
.+-.|-|++. -+.+| .+..+..|+.|.-- -++++-++... -. +.-.
T Consensus 176 trRldvAGRdiTr---yLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Yt-LP---DGRv 248 (389)
T KOG0677|consen 176 TRRLDVAGRDITR---YLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYT-LP---DGRV 248 (389)
T ss_pred hhhccccchhHHH---HHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeee-cC---CCcE
Confidence 0011111111 01111 23455666666421 11122111110 00 1123
Q ss_pred EEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCeEEEecCccCcHhHHHHHHHHhcC--------
Q 047849 318 ITLTRSKFE---TLVNNLI-----ERTRAPCKNCLKDANITTK--DVDEVLLVGGMTRVPKVQEVVSEIFGK-------- 379 (651)
Q Consensus 318 ~~itr~~fe---~l~~~~~-----~~i~~~i~~~l~~a~~~~~--~i~~VvLvGGss~ip~i~~~l~~~f~~-------- 379 (651)
+.+--+.|| .+++|.+ ..+.+++-.+++.+.++.. --.+|+|.||++.-|.+-..|++.+..
T Consensus 249 IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~ 328 (389)
T KOG0677|consen 249 IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLK 328 (389)
T ss_pred EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHc
Confidence 555555564 5566533 2355566677777655432 236899999999999988877765421
Q ss_pred -----------CCCCcCCccchheehhHHHhhhccC
Q 047849 380 -----------SPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 380 -----------~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.+..++.-...|-+|.|.+|.++..
T Consensus 329 ~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 329 GDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred CChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 1122344467888898888887654
No 92
>PRK09698 D-allose kinase; Provisional
Probab=92.84 E-value=6.7 Score=40.74 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=26.6
Q ss_pred cCCceEEeecchHHHhhhhcccc--CCCeEEEEEeCCcceEEEEE
Q 047849 216 AGLDVQRIINEPTAASLSYGMNN--KEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~--~~~~vlVvD~GggT~Dvsv~ 258 (651)
.|++ +.+.|+-.|+|++-.... ...+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEE
Confidence 4776 479999999987643221 1237888888866 444444
No 93
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.77 E-value=0.55 Score=46.51 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhCCCCCeEEEEecCCCCHH-HHHHHHHHHHHcCCceEEeecchHHHhhhhccccCCCeEEEEEeCCcce
Q 047849 175 LTKMKETAESYLGKSVSKAVITVPAYFNDA-QRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTF 253 (651)
Q Consensus 175 L~~l~~~a~~~~~~~~~~~VITVPa~f~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~ 253 (651)
.+.|.+.+++.++.++ .++++-..|... .....++.|. - ...|.-.+......+.+++||+|..|+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA---a--------NW~Ata~~~~e~~~dsci~VD~GSTTt 142 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA---A--------NWVATARFLAEEIKDSCILVDMGSTTT 142 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH---h--------hhHHHHHHHHHhcCCceEEEecCCccc
Confidence 4567777888777765 888998888754 2221222110 0 011111122222334799999999999
Q ss_pred EEEEEE
Q 047849 254 DVSILE 259 (651)
Q Consensus 254 Dvsv~~ 259 (651)
|+.=+.
T Consensus 143 DIIPi~ 148 (330)
T COG1548 143 DIIPIK 148 (330)
T ss_pred ceEeec
Confidence 998765
No 94
>PF13941 MutL: MutL protein
Probab=92.77 E-value=0.58 Score=51.21 Aligned_cols=43 Identities=26% Similarity=0.577 Sum_probs=31.5
Q ss_pred EEEEEcCCceEEEEEEe--CCceEEEeCCCCCccceEEEEEeeCCcEEEcHh
Q 047849 59 IIGIDLGTTNSCVALME--GKNPKVIENSEGSRTTPSVVAFNQKGELLVGTP 108 (651)
Q Consensus 59 vvGID~GTt~s~va~~~--~~~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~ 108 (651)
++-+||||||+++..++ .+..+++. .-..||.| - + +.+..|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv-~-~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV-E-P-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc-C-c-ccHHHHHH
Confidence 68899999999999998 77777764 44567777 2 3 44555553
No 95
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.76 E-value=1.2 Score=49.38 Aligned_cols=90 Identities=20% Similarity=0.275 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCC--HHHHHHHHHHHHHcCCceEEeecchHHHhhhh-ccc--cC-CCe
Q 047849 169 QIGAFVLTKMKETAESYLGKSVSKAVITVPAYFN--DAQRQATKDAGRIAGLDVQRIINEPTAASLSY-GMN--NK-EGL 242 (651)
Q Consensus 169 ev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~--~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~--~~-~~~ 242 (651)
+.+...+..|+..++...+..+.++.+---+.+- ...-+.+..+-+..|+++ .+|+.-+=|-+.| +.- -. .+.
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~vATsA~R~A~N~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~~~~~~~ 130 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRVVATSALRDAPNGDEFLARVEKELGLPI-EVISGEEEARLIYLGVASTLPRKGD 130 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEEehhHHHHcCCCHHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhcCCCCCC
Confidence 3445555556665555555555553221111111 223456788888889998 5555444443333 322 12 348
Q ss_pred EEEEEeCCcceEEEEEE
Q 047849 243 IAVFDLGGGTFDVSILE 259 (651)
Q Consensus 243 vlVvD~GggT~Dvsv~~ 259 (651)
.+|+|+|||+|.+++..
T Consensus 131 ~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 131 GLVIDIGGGSTELVLGD 147 (492)
T ss_pred EEEEEecCCeEEEEEec
Confidence 99999999999999986
No 96
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=92.47 E-value=0.07 Score=47.48 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.2
Q ss_pred EEEEEeCCcceEEEEEEEe
Q 047849 243 IAVFDLGGGTFDVSILEIS 261 (651)
Q Consensus 243 vlVvD~GggT~Dvsv~~~~ 261 (651)
|+++|+|++++.+++++.+
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 6899999999999999863
No 97
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.36 E-value=0.3 Score=54.87 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=37.9
Q ss_pred CCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 352 KDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 352 ~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
..++.|.++||+++.+...+++.+.||.++..+...+.+.+.||++.+..
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH
Confidence 45669999999999999999999999998875555555445555544443
No 98
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=91.55 E-value=8.4 Score=39.66 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=22.9
Q ss_pred cEEEEEcCCceEEEEEEeCCceEEEeC
Q 047849 58 DIIGIDLGTTNSCVALMEGKNPKVIEN 84 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~~~ii~~ 84 (651)
..|-+|=|.-+.+++...+..|.+++|
T Consensus 4 ~tiVlDNGay~~KiG~s~~~~p~~vpN 30 (400)
T KOG0680|consen 4 TTIVLDNGAYNIKIGPSTNKKPFVVPN 30 (400)
T ss_pred ceEEEcCCceeEEeccCCCCCceeccc
Confidence 468899999999999998888887754
No 99
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=90.53 E-value=4.6 Score=42.04 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=35.4
Q ss_pred HHHHHHHHcCCceEEeecchHHHhhhhcc-cc--CCCeEEEEEeCCcceEEEEEE
Q 047849 208 ATKDAGRIAGLDVQRIINEPTAASLSYGM-NN--KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 208 ~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~-~~--~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.+...-+..|+++ ++|+..+=|.+.|.- .. .....+++|+|||++.++++.
T Consensus 90 ~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 90 FLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEec
Confidence 3334445679988 688888777776632 11 112459999999999999876
No 100
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=90.42 E-value=17 Score=36.57 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccC
Q 047849 322 RSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTR 365 (651)
Q Consensus 322 r~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ 365 (651)
++..+.+...++.....+|+..+++....-..-+.++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45667777777777777777777765433224469999999864
No 101
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.98 E-value=0.081 Score=47.08 Aligned_cols=56 Identities=16% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcC---CceEE---------eecch-HHHhhh
Q 047849 174 VLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAG---LDVQR---------IINEP-TAASLS 233 (651)
Q Consensus 174 ~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AG---l~~~~---------li~Ep-~AAAl~ 233 (651)
.|+...+.|++..+.++..+.+++ .....+.+.++++.++ +.+-. ++..| .|+|++
T Consensus 51 ~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 51 AIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 344445556665555556666655 3344555666777776 77766 78888 787764
No 102
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=89.95 E-value=1.9 Score=45.85 Aligned_cols=151 Identities=19% Similarity=0.283 Sum_probs=80.4
Q ss_pred CCcEEEEEcCCceEEEEEEe-CC----ceEEEeCCCCCccceEEEEEeeCCcEEEcHhHHhhhhhCCCchhhhhhhhhCC
Q 047849 56 GNDIIGIDLGTTNSCVALME-GK----NPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTLFGTKRLIGR 130 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~-~~----~~~ii~~~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~lg~ 130 (651)
..++|-||=|+|-|.|-++. +. .+-.+..+.=....|=.-+| ..+|+.....++.|+.+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsf----------------addp~~aA~Sl~~LLd~ 129 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSF----------------ADDPEEAANSLRPLLDV 129 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCccccc----------------CCChHHHHHhHHHHHHH
Confidence 45789999999999998874 11 11111110001111222233 23455556666666633
Q ss_pred CCCChHHHHHhhcceeEEEECCCCCeEEE-eCCeeeChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHH
Q 047849 131 KFDDPQTQKEMQMVSYKIVRAPNGDAWVE-ANGQQYSPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQRQAT 209 (651)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l 209 (651)
. ...+|.+..+ ...+.++ .-|-+..|.+-+..+|+.++++.++...-.+..-.
T Consensus 130 A---------~~~vP~~~~~--kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~--------------- 183 (453)
T KOG1385|consen 130 A---------EAFVPREHWK--KTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDA--------------- 183 (453)
T ss_pred H---------HhhCCHhHhc--cCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCc---------------
Confidence 2 2233333221 1111222 44667889999999999999988743332222111
Q ss_pred HHHHHHcCCceEEeec---chHHHh--hhhcccc---C-CCeEEEEEeCCcceEEEEEE
Q 047849 210 KDAGRIAGLDVQRIIN---EPTAAS--LSYGMNN---K-EGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 210 ~~Aa~~AGl~~~~li~---Ep~AAA--l~y~~~~---~-~~~vlVvD~GggT~Dvsv~~ 259 (651)
+.+++ |-.-|- +.|.... . .+.+.|+|+|||+|.++..-
T Consensus 184 -----------VsIm~GtdEGv~aWiTiN~Llg~L~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 184 -----------VSIMDGTDEGVYAWITINYLLGTLGAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred -----------eeeccCcccceeeeeehhhhhcccCCCCCCceEEEEcCCceEEEEEec
Confidence 22222 111111 2233321 1 23899999999999999875
No 103
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=89.91 E-value=21 Score=37.24 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=24.6
Q ss_pred cCCceEEeecchHHHhhhhccccC---CCeEEEEEeCCc
Q 047849 216 AGLDVQRIINEPTAASLSYGMNNK---EGLIAVFDLGGG 251 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~~~~---~~~vlVvD~Ggg 251 (651)
.|+++ .+-|+-.|+|++-..... .++++.+-+|-|
T Consensus 106 ~~~Pv-~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLPV-FVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred HCCCE-EEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
Confidence 45555 899999999998654432 237777777766
No 104
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=88.87 E-value=0.75 Score=50.51 Aligned_cols=83 Identities=19% Similarity=0.314 Sum_probs=58.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHh
Q 047849 320 LTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 320 itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a 399 (651)
=+.+.+-.+....+.-+.--.+..++...-..-.|+.|+..||-.+.|.+.+.+.+..|+++..+ ..+++++.|+|+.|
T Consensus 398 T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~ 476 (544)
T COG1069 398 TSPESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFA 476 (544)
T ss_pred CCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHH
Confidence 34444445555555554433333333322234578999999999999999999999999877665 66789999999999
Q ss_pred hhcc
Q 047849 400 GILR 403 (651)
Q Consensus 400 ~~l~ 403 (651)
+.-.
T Consensus 477 avAa 480 (544)
T COG1069 477 AVAA 480 (544)
T ss_pred HHHh
Confidence 8644
No 105
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=88.63 E-value=5.6 Score=40.80 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=93.9
Q ss_pred eecchHHHhhhhccccCC--CeEEEEEeCCcceEEEEEE--EecccccccC-CCCccCHH--HHHHHHHHHHHh-hhhcC
Q 047849 223 IINEPTAASLSYGMNNKE--GLIAVFDLGGGTFDVSILE--ISNGVFEDEG-IDLSKDRL--ALQRLREAAEKA-KIELS 294 (651)
Q Consensus 223 li~Ep~AAAl~y~~~~~~--~~vlVvD~GggT~Dvsv~~--~~~~~~~~~~-~~~~~~~~--~~~~L~~~~e~~-K~~Ls 294 (651)
-+..|+=..++|...... ++++|.|+-.-|..+.|-. +-++.=-.-+ .-+...+. .+.++....+.- -..+|
T Consensus 128 H~aSpEKi~iay~a~~~~~~~~~ivsDiSSNTVtlaVk~GKIVggidaciGAPG~lhGpLDlE~ir~Id~g~~tan~aFs 207 (326)
T TIGR03281 128 HIASPEKVSIAYNAYCLTGFKDFIVSDISSNTVTLLIKDGKIIGGFDACVGAPGVLHGPLDLEAIRNIDAGKKTANEAFS 207 (326)
T ss_pred ccCCHHHHHHHHHHHHHcCCCCEEEEecCCCeEEEEEECCEEEccccccccCcccccCcccHHHHHhcccCcccHHHHHh
Confidence 356777777877654432 4899999999988887653 1111000000 00001111 122222221111 12232
Q ss_pred CCceeEEEecceeccCCCCeeEEEEecHHHHHHHHH---HHHHHHHHHHHHHH---HHcCCCCCCCCeEEEecC--ccCc
Q 047849 295 STTQTDINLPFITADASGAKHLNITLTRSKFETLVN---NLIERTRAPCKNCL---KDANITTKDVDEVLLVGG--MTRV 366 (651)
Q Consensus 295 ~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~---~~~~~i~~~i~~~l---~~a~~~~~~i~~VvLvGG--ss~i 366 (651)
..--..+. .++. ....+++||.+.+. +....+..++.-+. ..........+.|+|.|- +.+.
T Consensus 208 ~aGa~kIa--~~~~--------~~~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~ 277 (326)
T TIGR03281 208 HAGAVKIA--CADK--------GVENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLRE 277 (326)
T ss_pred hcCeeEEe--cccc--------cccCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccC
Confidence 22222221 1111 12566777776652 22222222222222 221111123348999986 9999
Q ss_pred H-hHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEEE
Q 047849 367 P-KVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLLL 412 (651)
Q Consensus 367 p-~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~~ 412 (651)
| .+++.|++.|..++. .++. +..|.|+|+.|.-+.+..++++=+
T Consensus 278 ~~~v~~~I~~~L~~~V~-~L~~-ksAA~G~AiIA~dI~gGk~~iLGi 322 (326)
T TIGR03281 278 PINFSGKIKRVLSCKVL-VLDS-ESAAIGLALIAEDIFSGKREILGI 322 (326)
T ss_pred chHHHHHHHHHhCCCeE-Eecc-hhhhhhHHHHHHHHhCCcceEeee
Confidence 9 999999999985443 2333 788999999998888766765433
No 106
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=88.50 E-value=1.5 Score=44.88 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-----cCCCCCcCCccchheehhHHHh
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-----GKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-----~~~~~~~~~p~~aVA~GAa~~a 399 (651)
++++...+.+.+.+..++.+...... .|+|+||....+.+++.+++.+ ..++..+..|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34455555566666666666543322 2999999999977777664444 2345567889999999999986
No 107
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=88.02 E-value=1.8 Score=44.75 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCceEEeecchHHHhhhhc-cc--c-CCCeEEEEEeCCcceEEEEEE
Q 047849 208 ATKDAGRIAGLDVQRIINEPTAASLSYG-MN--N-KEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 208 ~l~~Aa~~AGl~~~~li~Ep~AAAl~y~-~~--~-~~~~vlVvD~GggT~Dvsv~~ 259 (651)
.+...-+..|+++ .+|+..+=|.+.|. .. . ..+..+|+|+|||++.+++++
T Consensus 76 ~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~ 130 (285)
T PF02541_consen 76 FLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFE 130 (285)
T ss_dssp HHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEE
Confidence 3445556679988 66766665555441 11 1 234899999999999999986
No 108
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=86.67 E-value=3.6 Score=44.11 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.4
Q ss_pred CCCCCcEEEEEcCCceEEEEEEe
Q 047849 53 KPAGNDIIGIDLGTTNSCVALME 75 (651)
Q Consensus 53 ~~~~~~vvGID~GTt~s~va~~~ 75 (651)
......++.||||.||..++.+.
T Consensus 71 g~e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 71 GNESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCCCEEEEecCCceEEEEEEE
Confidence 34567899999999999999885
No 109
>PLN02666 5-oxoprolinase
Probab=85.99 E-value=2.5 Score=52.32 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC-CCCcCCccchheehhHH
Q 047849 337 RAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS-PSKGVNPDEAVALGAAI 397 (651)
Q Consensus 337 ~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~-~~~~~~p~~aVA~GAa~ 397 (651)
.+.|+......|+++.+. .++..||.+ |...-.|.+.+|.+ +..+.+|.-..|+|+++
T Consensus 472 ~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 472 CRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred HHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 334455555556655432 344455554 88888899999976 77788888888999975
No 110
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=85.24 E-value=0.72 Score=50.28 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCCC--CCCeEEEecCccCcHhHHHHHHHHh-cC-------CCCCcCCccchheehhHHHhhhc
Q 047849 336 TRAPCKNCLKDANITTK--DVDEVLLVGGMTRVPKVQEVVSEIF-GK-------SPSKGVNPDEAVALGAAIQGGIL 402 (651)
Q Consensus 336 i~~~i~~~l~~a~~~~~--~i~~VvLvGGss~ip~i~~~l~~~f-~~-------~~~~~~~p~~aVA~GAa~~a~~l 402 (651)
+.+++...|...-.+-. .+..|+|+||.|.+|.+.+.|++.+ +. .+....||...+=+||+.+|+..
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~ 615 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANP 615 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCc
Confidence 34445555554322222 2789999999999999999999876 32 24557799999999999999863
No 111
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=84.61 E-value=11 Score=39.58 Aligned_cols=53 Identities=26% Similarity=0.446 Sum_probs=39.0
Q ss_pred CCCCeEEEecCccCcHhHHHHHHHHhcCC---CCCcCCc----cchheehhHHHhhhccC
Q 047849 352 KDVDEVLLVGGMTRVPKVQEVVSEIFGKS---PSKGVNP----DEAVALGAAIQGGILRG 404 (651)
Q Consensus 352 ~~i~~VvLvGGss~ip~i~~~l~~~f~~~---~~~~~~p----~~aVA~GAa~~a~~l~~ 404 (651)
.+++.|+|.|-.+++|-+.+.+++.|+.- ....+.+ ....|.|||+.|.-+.+
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 46789999999999999998888888431 1122222 23478999999987776
No 112
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=82.94 E-value=19 Score=37.59 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHHHHHHh--hCCCCCeEEEEecCCCCHHH------------HHHHHHHH-HHcCCceEEeecchHHHh
Q 047849 167 PSQIGAFVLTKMKETAESY--LGKSVSKAVITVPAYFNDAQ------------RQATKDAG-RIAGLDVQRIINEPTAAS 231 (651)
Q Consensus 167 ~eev~a~~L~~l~~~a~~~--~~~~~~~~VITVPa~f~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~AAA 231 (651)
++++...+.+.+.+..++. ...++..+.|++|...+... ...+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 4444444444444433322 12345667888887553211 11233332 334776 47999999999
Q ss_pred hhhccc---cCCCeEEEEEeCCcceEEEEE
Q 047849 232 LSYGMN---NKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 232 l~y~~~---~~~~~vlVvD~GggT~Dvsv~ 258 (651)
++-... +..++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 864332 222488999999875 55555
No 113
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=82.50 E-value=2.1 Score=43.87 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecC-ccCcHhHHHHHHHHhc---CCCCCcCCccchheehhHH
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGG-MTRVPKVQEVVSEIFG---KSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGG-ss~ip~i~~~l~~~f~---~~~~~~~~p~~aVA~GAa~ 397 (651)
|+++..++.-+...|-..-. ..-....+..|+++|| .+..|.+++.+...+. .+...+.|+...+|+||++
T Consensus 204 eDiAaSLl~mV~~nIg~lA~-~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 204 EDIAASLLGLIGNNIGQIAY-LCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45555555544443322111 1112346789999999 6789999999998874 5567788999999999986
No 114
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=81.93 E-value=3.1 Score=45.19 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=61.5
Q ss_pred EEEecHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheeh
Q 047849 317 NITLTRS-KFETLVNNLIERTRAPCKNCLKDANITTK-DVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALG 394 (651)
Q Consensus 317 ~~~itr~-~fe~l~~~~~~~i~~~i~~~l~~a~~~~~-~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~G 394 (651)
-+-|||. .-+.+++..++.+.=..+++++...-+.. .++.+-+=||.++..++.+...+.+|.++.++.+. |..|+|
T Consensus 364 i~Gltrgt~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlG 442 (499)
T COG0554 364 IFGLTRGTTKAHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALG 442 (499)
T ss_pred EEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHH
Confidence 3455554 23456666666665555555554222211 57888899999999999999999999988776655 568999
Q ss_pred hHHHhhhccC
Q 047849 395 AAIQGGILRG 404 (651)
Q Consensus 395 Aa~~a~~l~~ 404 (651)
||+.|..-.+
T Consensus 443 aA~lAGla~G 452 (499)
T COG0554 443 AAYLAGLAVG 452 (499)
T ss_pred HHHHHhhhhC
Confidence 9999987554
No 115
>PRK00976 hypothetical protein; Provisional
Probab=81.06 E-value=7.7 Score=40.53 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCeEEEecCccCcH--hHHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeEE
Q 047849 353 DVDEVLLVGGMTRVP--KVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELLL 411 (651)
Q Consensus 353 ~i~~VvLvGGss~ip--~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~~ 411 (651)
+++.|+|-||.++.+ .+.+.+++.+... ...-..++-++|||+.|..+.+..++++=
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~ilg 321 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDILG 321 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceeee
Confidence 467999999999998 7888888888543 22334578999999998877665566543
No 116
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=79.33 E-value=2.1 Score=42.94 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.5
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
+++|||+|||++++++++..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 47999999999999999843
No 117
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.76 E-value=2.7 Score=48.58 Aligned_cols=41 Identities=32% Similarity=0.506 Sum_probs=28.7
Q ss_pred ceEEeecchHHHhhhhccc--cCCCeEEEEEeCCcceEEEEEE
Q 047849 219 DVQRIINEPTAASLSYGMN--NKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 219 ~~~~li~Ep~AAAl~y~~~--~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
++..|.+-|.|..+....- ...++++++|+||.|||++++.
T Consensus 254 pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 254 PVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTSTDVALII 296 (674)
T ss_pred CeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcceeeeeee
Confidence 3445677777766654333 1112599999999999999986
No 118
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=76.22 E-value=2.7 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=16.5
Q ss_pred EEEEEcCCceEEEEEEeC
Q 047849 59 IIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~ 76 (651)
++|||+|.|++.+|+++.
T Consensus 3 ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred EEEEccCCCeEEEEEECC
Confidence 799999999999999864
No 119
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=73.88 E-value=3.7 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=20.4
Q ss_pred CCCcEEEEEcCCceEEEEEEeCCc
Q 047849 55 AGNDIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~~~~ 78 (651)
.+++++|||+|||++++.+++.+.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~~~ 25 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDEDG 25 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeCCC
Confidence 356799999999999999987653
No 120
>PRK09557 fructokinase; Reviewed
Probab=73.81 E-value=35 Score=35.31 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=26.6
Q ss_pred cCCceEEeecchHHHhhhhcc---ccCCCeEEEEEeCCcceEEEEE
Q 047849 216 AGLDVQRIINEPTAASLSYGM---NNKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~---~~~~~~vlVvD~GggT~Dvsv~ 258 (651)
.|++ +.+.|+..|+|++-.. .+..++++.+.+|.| +-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 3776 4799999999987433 222347788888755 344444
No 121
>PLN02596 hexokinase-like
Probab=73.53 E-value=16 Score=40.71 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCC--ceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEE
Q 047849 207 QATKDAGRIAGL--DVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 207 ~~l~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~ 258 (651)
+.+.+|.+.-|+ +++.|+|+.++..++.+....+ ..+=+=+|.||=-+.+-
T Consensus 209 ~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~~-~~iG~I~GTGtNacY~E 261 (490)
T PLN02596 209 NDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNKD-TVAAVTLGMGTNAAYVE 261 (490)
T ss_pred HHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCCC-eEEEEEEecccceEEEE
Confidence 334444444454 5788999999988776655332 22323366665444433
No 122
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=73.35 E-value=8.9 Score=40.98 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcC-CCCC----cCCccchheehhHHHhh
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK-SPSK----GVNPDEAVALGAAIQGG 400 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~-~~~~----~~~p~~aVA~GAa~~a~ 400 (651)
++++.-+.+-+...|.+.++... .+++.|+++||+++.|.|.+.|++.++. ++.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 44444455555555666666543 2378999999999999999999999965 3321 24455444555566665
Q ss_pred h
Q 047849 401 I 401 (651)
Q Consensus 401 ~ 401 (651)
.
T Consensus 337 ~ 337 (364)
T PF03702_consen 337 R 337 (364)
T ss_dssp H
T ss_pred H
Confidence 4
No 123
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=73.11 E-value=25 Score=38.85 Aligned_cols=68 Identities=9% Similarity=-0.059 Sum_probs=41.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHH-HHcCCceEEeecchHHHhhhhccccC-C-C-eEEEEEeCCcceEEEEEEEec
Q 047849 192 KAVITVPAYFNDAQRQATKDAG-RIAGLDVQRIINEPTAASLSYGMNNK-E-G-LIAVFDLGGGTFDVSILEISN 262 (651)
Q Consensus 192 ~~VITVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~-~-~-~vlVvD~GggT~Dvsv~~~~~ 262 (651)
.+++|=+..=...+|+.|-+-. +.-|++-+.+=-+..-+ |..+.. . + ..||+++|..+|.|-.+--+.
T Consensus 118 PIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS---~~hN~~~~~~~~~liis~g~~~T~vipvldG~ 189 (645)
T KOG0681|consen 118 PIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFS---FYHNYGKSSNKSGLIISMGHSATHVIPVLDGR 189 (645)
T ss_pred CeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHH---HhhccCcccCcceEEEecCCCcceeEEEecCc
Confidence 4777777766677888876654 44588765442222222 111111 1 2 689999999999988775333
No 124
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=72.67 E-value=63 Score=28.52 Aligned_cols=75 Identities=12% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-------------cCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Q 047849 550 KALIDIRNQADTTIYSIEKSLGEYR-------------EKIPSEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVS 616 (651)
Q Consensus 550 ~~~~~~~n~le~~i~~~~~~l~~~~-------------~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~ 616 (651)
......+-.+|.-+.++...++++. +.+-.-.++++.+.|++=.+.|+-. ...++..-+.++..+.
T Consensus 23 ~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~r-i~tLekQe~~l~e~l~ 101 (119)
T COG1382 23 QKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELR-IKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3344455566666666666665431 1222335666666666666666543 4444444455555555
Q ss_pred HHHHHHhcC
Q 047849 617 KIGQHMAGG 625 (651)
Q Consensus 617 ~i~~~~~~~ 625 (651)
.+-+.+++.
T Consensus 102 eLq~~i~~~ 110 (119)
T COG1382 102 ELQSEIQKA 110 (119)
T ss_pred HHHHHHHHH
Confidence 555555443
No 125
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=71.41 E-value=14 Score=39.38 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCC----cCCccchheehhHHHhhh
Q 047849 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSK----GVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 329 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~----~~~p~~aVA~GAa~~a~~ 401 (651)
+.-+.+-+...|.+.+.... ...+.|+++||+++.|+|.+.|++.++.++.. ..+++.-=|..-|++|..
T Consensus 265 ~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 265 QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33344444445555554432 23468999999999999999999999633322 245554445555666653
No 126
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.42 E-value=5.7 Score=36.04 Aligned_cols=21 Identities=29% Similarity=0.503 Sum_probs=18.6
Q ss_pred cEEEEEcCCceEEEEEEeCCc
Q 047849 58 DIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~ 78 (651)
.++|||+|+..+.+|+.+...
T Consensus 2 riL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTT
T ss_pred eEEEEEeCCCeEEEEEecCCC
Confidence 489999999999999998754
No 127
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=68.10 E-value=16 Score=42.32 Aligned_cols=50 Identities=14% Similarity=0.110 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCc--HhHHH-HHHHHh
Q 047849 328 LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV--PKVQE-VVSEIF 377 (651)
Q Consensus 328 l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~i--p~i~~-~l~~~f 377 (651)
++...++.+...+-..+...-+.....+.|+|-||-+.- +++.+ .+.+.|
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f 296 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARF 296 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHH
Confidence 344566666665555555433333336789999998733 66653 666666
No 128
>PRK03011 butyrate kinase; Provisional
Probab=67.94 E-value=6.7 Score=41.91 Aligned_cols=46 Identities=28% Similarity=0.331 Sum_probs=35.7
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcC----CCCCcCCccchheehhHHH
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGK----SPSKGVNPDEAVALGAAIQ 398 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~----~~~~~~~p~~aVA~GAa~~ 398 (651)
++|.|+|.||.+..+.+.+.|++.+.. .+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 688999999999999999999888752 2333445567999998754
No 129
>PLN02405 hexokinase
Probab=67.90 E-value=16 Score=40.75 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCC--ceEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEE
Q 047849 206 RQATKDAGRIAGL--DVQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVS 256 (651)
Q Consensus 206 r~~l~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvs 256 (651)
.+.+.+|.+.-|+ +++.|+|+.++..++......+ ..+=+=+|-||=-+-
T Consensus 208 v~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~~-~~iG~IlGTGtNacY 259 (497)
T PLN02405 208 VGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNPD-VVAAVILGTGTNAAY 259 (497)
T ss_pred HHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCCC-ceEEEEEeCCeeeEE
Confidence 3445555555555 5678999999988766554332 334444566554333
No 130
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=67.59 E-value=5 Score=41.93 Aligned_cols=31 Identities=16% Similarity=0.011 Sum_probs=22.2
Q ss_pred hHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 227 PTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 227 p~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
+.|.|...+.. .++++++||||.|+|++++.
T Consensus 116 ~~a~A~~la~~--~~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 116 WLATAQLIAKR--IPECLFVDMGSTTTDIIPII 146 (318)
T ss_pred HHHHHHHHHhc--CCCEEEEEcCccceeeEEec
Confidence 45534333322 34799999999999999986
No 131
>PRK00047 glpK glycerol kinase; Provisional
Probab=66.69 E-value=5.5 Score=44.71 Aligned_cols=21 Identities=29% Similarity=0.465 Sum_probs=18.2
Q ss_pred CcEEEEEcCCceEEEEEEeCC
Q 047849 57 NDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~ 77 (651)
.+++|||+|||++++++++..
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred CEEEEEecCCCceEEEEECCC
Confidence 468999999999999998643
No 132
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=66.08 E-value=5.4 Score=44.82 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=18.3
Q ss_pred cEEEEEcCCceEEEEEEeCCc
Q 047849 58 DIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~ 78 (651)
.++|||+|||++++++++..+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEEecCCCceEEEEECCCC
Confidence 589999999999999997543
No 133
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=66.02 E-value=5.4 Score=45.05 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=18.0
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
+++|||+|||++++++++..
T Consensus 4 ~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 69999999999999999754
No 134
>PLN02362 hexokinase
Probab=65.99 E-value=18 Score=40.55 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=18.3
Q ss_pred CCCcEEEEEcCCceEEEEEEe
Q 047849 55 AGNDIIGIDLGTTNSCVALME 75 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~ 75 (651)
....+++||||.||..|+.+.
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~ 113 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQ 113 (509)
T ss_pred cceeEEEEecCCceEEEEEEE
Confidence 456789999999999999885
No 135
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=65.53 E-value=19 Score=27.55 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=31.6
Q ss_pred HHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCce
Q 047849 180 ETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDV 220 (651)
Q Consensus 180 ~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~ 220 (651)
+..+++.... ...++.|+.++..+|..+.+.|...||..
T Consensus 6 ~~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 6 KALEDFRASD--NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred HHHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 3344454443 67899999999999999999999999965
No 136
>PRK10331 L-fuculokinase; Provisional
Probab=64.76 E-value=6.1 Score=43.97 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.6
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
.++|||+|||++++++++..
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred eEEEEecCCCceEEEEEcCC
Confidence 58999999999999999743
No 137
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=62.57 E-value=6.9 Score=43.48 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=17.7
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
.++|||+|||++++++++..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 48999999999999999754
No 138
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=62.12 E-value=9.8 Score=34.67 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=18.1
Q ss_pred CcEEEEEcCCceEEEEEEeCC
Q 047849 57 NDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~ 77 (651)
+.++|||+|+..+.+|+.+..
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 349999999999999998763
No 139
>PRK15027 xylulokinase; Provisional
Probab=60.83 E-value=7.6 Score=43.42 Aligned_cols=19 Identities=47% Similarity=0.716 Sum_probs=17.0
Q ss_pred EEEEEcCCceEEEEEEeCC
Q 047849 59 IIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~ 77 (651)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 7999999999999999753
No 140
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=59.97 E-value=1.1e+02 Score=31.51 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=27.3
Q ss_pred HcCCceEEeecchHHHhhhhccc---cCCCeEEEEEeCCcceEEEEE
Q 047849 215 IAGLDVQRIINEPTAASLSYGMN---NKEGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 215 ~AGl~~~~li~Ep~AAAl~y~~~---~~~~~vlVvD~GggT~Dvsv~ 258 (651)
..|++ +.+.|+-.|+|++-... +..++++++.+|.| +-.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEE
Confidence 34776 47999999999874332 22248888888866 333443
No 141
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=59.69 E-value=48 Score=36.57 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHcCCc---eEEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 200 YFNDAQRQATKDAGRIAGLD---VQRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 200 ~f~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
-....-.+.+.+|.+.-|+. ++.++|+.++..++...... ++++=+=+|.||--+-+.+
T Consensus 188 ~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~-~~~igvI~GTGtNacY~e~ 249 (474)
T KOG1369|consen 188 CEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDP-NCEIGVIFGTGTNACYMED 249 (474)
T ss_pred hhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCC-CcEEEEEECCCccceeeee
Confidence 33344478899999999985 67899999998887665544 3566666788776655544
No 142
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=59.45 E-value=8.3 Score=43.37 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=17.4
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
+++|||+|||++++++++..
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred CEEEEeccccceEEEEEcCC
Confidence 37999999999999999753
No 143
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=58.76 E-value=18 Score=42.29 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=37.2
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhc---CCCCCc---CCccchheehhHHHhh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFG---KSPSKG---VNPDEAVALGAAIQGG 400 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~---~~~~~~---~~p~~aVA~GAa~~a~ 400 (651)
.++.|+|+||..+..++++.|.+.++ .++..+ .-.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999998874 333222 3457789999988764
No 144
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=58.48 E-value=8.1 Score=41.34 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=19.1
Q ss_pred CcEEEEEcCCceEEEEEEeCCc
Q 047849 57 NDIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~~ 78 (651)
.+++|||+|+|.+++.+++.++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 4689999999999999988764
No 145
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=58.44 E-value=8.9 Score=42.97 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.5
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
+++|||+|||++++++++..
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 48999999999999999743
No 146
>PLN02920 pantothenate kinase 1
Probab=58.03 E-value=25 Score=37.71 Aligned_cols=50 Identities=14% Similarity=0.008 Sum_probs=36.6
Q ss_pred CCCCCeEEEecCccCcH-hHHHHHHHHh---c---CCCCCcCCccchheehhHHHhh
Q 047849 351 TKDVDEVLLVGGMTRVP-KVQEVVSEIF---G---KSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 351 ~~~i~~VvLvGGss~ip-~i~~~l~~~f---~---~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
..+++.|+++|.+.+.+ ..++.|.-.. . .+....-+....-|+||.+...
T Consensus 295 ~~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 295 RFGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred HcCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 36788999999999998 7776554332 2 3445567888899999987644
No 147
>PRK04123 ribulokinase; Provisional
Probab=57.76 E-value=9.2 Score=43.50 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=17.0
Q ss_pred cEEEEEcCCceEEEEEEe
Q 047849 58 DIIGIDLGTTNSCVALME 75 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~ 75 (651)
+++|||+|||++++++++
T Consensus 4 ~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEEecCCCceEEEEEE
Confidence 689999999999999998
No 148
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=57.64 E-value=34 Score=36.66 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=55.4
Q ss_pred EEecHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCe-EEEecCccCcHhHHHHHHHHhcC-CCCC-cCCccchhee
Q 047849 318 ITLTRSKFETLVNNLIERTR-APCKNCLKDANITTKDVDE-VLLVGGMTRVPKVQEVVSEIFGK-SPSK-GVNPDEAVAL 393 (651)
Q Consensus 318 ~~itr~~fe~l~~~~~~~i~-~~i~~~l~~a~~~~~~i~~-VvLvGGss~ip~i~~~l~~~f~~-~~~~-~~~p~~aVA~ 393 (651)
..-.+.++...++..+++++ ..++..+++.+ ++. +.|.||....-.....|.+..+. ++.. +.-.|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 34566677777777776654 45566666655 345 99999999999999988888543 3433 4456788999
Q ss_pred hhHHHhhhccC
Q 047849 394 GAAIQGGILRG 404 (651)
Q Consensus 394 GAa~~a~~l~~ 404 (651)
|||+++.....
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999885443
No 149
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=57.58 E-value=36 Score=37.00 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCC
Q 047849 324 KFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSP 381 (651)
Q Consensus 324 ~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~ 381 (651)
.++++-+-+++.+..++.+.+.++++++++|..++++|-++..-.+.-.=-+.++..+
T Consensus 54 ~~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~~P 111 (412)
T PF14574_consen 54 GLEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGRAP 111 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSSTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhccCC
Confidence 4677778888999999999999999999999999999977655554433333333333
No 150
>PLN02295 glycerol kinase
Probab=57.36 E-value=9.5 Score=42.99 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=16.9
Q ss_pred cEEEEEcCCceEEEEEEeC
Q 047849 58 DIIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~ 76 (651)
.++|||+|||++++++++.
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 3799999999999999974
No 151
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=57.24 E-value=9.7 Score=43.17 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=16.9
Q ss_pred cEEEEEcCCceEEEEEEe
Q 047849 58 DIIGIDLGTTNSCVALME 75 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~ 75 (651)
+++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 489999999999999998
No 152
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=56.68 E-value=9.8 Score=43.20 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=16.9
Q ss_pred EEEEEcCCceEEEEEEeCC
Q 047849 59 IIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~ 77 (651)
++|||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 7999999999999999743
No 153
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=56.53 E-value=20 Score=30.98 Aligned_cols=45 Identities=24% Similarity=0.391 Sum_probs=32.2
Q ss_pred eeEEEEEEcCC-eeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHh
Q 047849 491 QIEVTFDIDAN-GIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELH 542 (651)
Q Consensus 491 ~i~v~f~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~ 542 (651)
...+.|.+|.+ |.+.|++.|..||+... .++++++-++.+.+.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR-------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR-------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE-------EE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE-------eCCcHHHHHHHHHHHHH
Confidence 35799999886 78999999999999764 56778877776665553
No 154
>PTZ00107 hexokinase; Provisional
Probab=56.52 E-value=33 Score=37.97 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=18.1
Q ss_pred CCCcEEEEEcCCceEEEEEEe
Q 047849 55 AGNDIIGIDLGTTNSCVALME 75 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~ 75 (651)
....+++||||.||..|+.+.
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~ 92 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVS 92 (464)
T ss_pred ccceEEEEecCCceEEEEEEE
Confidence 455689999999999999885
No 155
>PLN02669 xylulokinase
Probab=55.16 E-value=13 Score=42.36 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.9
Q ss_pred CCCCcEEEEEcCCceEEEEEEeCC
Q 047849 54 PAGNDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 54 ~~~~~vvGID~GTt~s~va~~~~~ 77 (651)
+...+++|||+||+.+++++++..
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcCC
Confidence 445679999999999999998743
No 156
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=55.03 E-value=16 Score=33.92 Aligned_cols=17 Identities=41% Similarity=0.751 Sum_probs=15.9
Q ss_pred EEEEEcCCceEEEEEEe
Q 047849 59 IIGIDLGTTNSCVALME 75 (651)
Q Consensus 59 vvGID~GTt~s~va~~~ 75 (651)
|+|||.|++++.+|+.+
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999985
No 157
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=54.35 E-value=63 Score=31.58 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.8
Q ss_pred CeEEEEEeCCcceEEEEEEEecc
Q 047849 241 GLIAVFDLGGGTFDVSILEISNG 263 (651)
Q Consensus 241 ~~vlVvD~GggT~Dvsv~~~~~~ 263 (651)
+.+|++|+||.++-+.++++.+.
T Consensus 63 G~~LalDlGGTnlRv~~V~L~g~ 85 (206)
T PF00349_consen 63 GDFLALDLGGTNLRVALVELSGN 85 (206)
T ss_dssp EEEEEEEESSSSEEEEEEEEESS
T ss_pred ceEEEEeecCcEEEEEEEEEcCC
Confidence 38999999999999999998764
No 158
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=54.07 E-value=61 Score=24.88 Aligned_cols=42 Identities=12% Similarity=0.224 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCce
Q 047849 178 MKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDV 220 (651)
Q Consensus 178 l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~ 220 (651)
+.+..+++.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 4 ~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 4 YRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 344455555433 467899999999999999999999999976
No 159
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=53.48 E-value=14 Score=33.79 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.4
Q ss_pred CcEEEEEcCCceEEEEEEeCC
Q 047849 57 NDIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~~ 77 (651)
+.++|||+||-.+.||+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 458999999999999998764
No 160
>PRK09604 UGMP family protein; Validated
Probab=52.57 E-value=21 Score=37.79 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=34.8
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHh---cCCCCCcC---CccchheehhHHH
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIF---GKSPSKGV---NPDEAVALGAAIQ 398 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f---~~~~~~~~---~p~~aVA~GAa~~ 398 (651)
.++.|+|.||.+...++++.|.+.+ +.++..+. -.|.++++|++=+
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~ 305 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGY 305 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHH
Confidence 5678999999999999999999988 43333322 3467788888743
No 161
>PLN02914 hexokinase
Probab=51.37 E-value=75 Score=35.48 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=18.0
Q ss_pred CCCcEEEEEcCCceEEEEEEe
Q 047849 55 AGNDIIGIDLGTTNSCVALME 75 (651)
Q Consensus 55 ~~~~vvGID~GTt~s~va~~~ 75 (651)
....+++||||.||..|+.+.
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~ 113 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQ 113 (490)
T ss_pred eeeEEEEEecCCceEEEEEEE
Confidence 345689999999999999885
No 162
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=49.25 E-value=32 Score=34.99 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=36.9
Q ss_pred CCCCCCeEEEecCccCcHhHHHHHHHHhc----CCCCCcCCccchheehhHH
Q 047849 350 TTKDVDEVLLVGGMTRVPKVQEVVSEIFG----KSPSKGVNPDEAVALGAAI 397 (651)
Q Consensus 350 ~~~~i~~VvLvGGss~ip~i~~~l~~~f~----~~~~~~~~p~~aVA~GAa~ 397 (651)
-+..+|.|+|+||.++...+-++|.+... .-+.-..|-.+|.|.|+-.
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 45689999999999999999999998864 1223345666788888854
No 163
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=49.14 E-value=2.4e+02 Score=28.79 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=30.8
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcCC-------CCCcCCccchheehhHHHhh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGKS-------PSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~~-------~~~~~~p~~aVA~GAa~~a~ 400 (651)
+++.|+|-|+.+..+.+.+.+++.+... +........+.++|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 4578888888777666666666665321 11223346678899998754
No 164
>PF13941 MutL: MutL protein
Probab=48.99 E-value=71 Score=35.28 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=30.9
Q ss_pred EEEEEeCCcceEEEEEEEeccccc--ccCCCCcc-C-HHHHHHHHHHHHHhhhhcCC
Q 047849 243 IAVFDLGGGTFDVSILEISNGVFE--DEGIDLSK-D-RLALQRLREAAEKAKIELSS 295 (651)
Q Consensus 243 vlVvD~GggT~Dvsv~~~~~~~~~--~~~~~~~~-~-~~~~~~L~~~~e~~K~~Ls~ 295 (651)
+|++|||..+|-++++....+..+ ..+...+. . .....-+..+.++++..+..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHHHHHHHhcCC
Confidence 799999999999999995444333 11111111 1 12334455556666666543
No 165
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=48.88 E-value=14 Score=34.76 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=17.4
Q ss_pred CcEEEEEcCCceEEEEEEeC
Q 047849 57 NDIIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 57 ~~vvGID~GTt~s~va~~~~ 76 (651)
+.|+|||-|++++.+|+.+.
T Consensus 2 m~iLGIDPgl~~tG~avi~~ 21 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEV 21 (164)
T ss_pred CEEEEEccccCceeEEEEEe
Confidence 35999999999999999864
No 166
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=47.47 E-value=54 Score=34.50 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=44.9
Q ss_pred ecHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC--CCCcCCccchhee
Q 047849 320 LTRSKFETLVNN----LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS--PSKGVNPDEAVAL 393 (651)
Q Consensus 320 itr~~fe~l~~~----~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~--~~~~~~p~~aVA~ 393 (651)
+..++.++++.. .++-+.+..+++|+.. ..+.++++||-+....+|+++++..... ...-..+..|.--
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~-----~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDN 303 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHT-----GKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDN 303 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccch
Confidence 334445555544 4455555666666664 3568999999999999999999877422 1223344444444
Q ss_pred hhH
Q 047849 394 GAA 396 (651)
Q Consensus 394 GAa 396 (651)
||-
T Consensus 304 aaM 306 (342)
T COG0533 304 AAM 306 (342)
T ss_pred HHH
Confidence 443
No 167
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=47.40 E-value=3.5e+02 Score=28.10 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCc-HhHHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 331 NLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV-PKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 331 ~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~i-p~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
.++++....|...++...+ ......+.|.||.... |+..+..++..-.++ ..-+..||.+.|..
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~ 291 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALG 291 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHH
Confidence 4666666777777776532 2345689999999876 888887777664333 45577888888764
No 168
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=47.12 E-value=31 Score=36.19 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=32.8
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHh---cCCCCCc---CCccchheehhH
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIF---GKSPSKG---VNPDEAVALGAA 396 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f---~~~~~~~---~~p~~aVA~GAa 396 (651)
.++.|+|.||.+...++++.|.+.+ +.++..+ +-.|.++++|++
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 5678999999999999999999988 4333322 234667777765
No 169
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.72 E-value=2.1e+02 Score=28.72 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=85.1
Q ss_pred eecchHHHhhhhcccc--CCCeEEEEEeCCcceEEEEEEEeccccc-----ccCCCCccCHHHHHHHH---HHHHHhhhh
Q 047849 223 IINEPTAASLSYGMNN--KEGLIAVFDLGGGTFDVSILEISNGVFE-----DEGIDLSKDRLALQRLR---EAAEKAKIE 292 (651)
Q Consensus 223 li~Ep~AAAl~y~~~~--~~~~vlVvD~GggT~Dvsv~~~~~~~~~-----~~~~~~~~~~~~~~~L~---~~~e~~K~~ 292 (651)
-+..|+-..++|.... ..+.++|.|+-..|..+.+.. +.++. -.-.-+...|..+..++ .--..|-..
T Consensus 134 H~aSpEKlgiay~a~~~~g~ed~VvsDiSSNTVtllvkd--GkviG~iDACigA~GvlhGPlDLeaiR~ID~ge~tANea 211 (332)
T COG4020 134 HVASPEKLGIAYLAYLLSGSEDFVVSDISSNTVTLLVKD--GKVIGGIDACIGAPGVLHGPLDLEAIRRIDAGELTANEA 211 (332)
T ss_pred ccCCHHHhhHHHHHHHHcCccceEEEeccCCeEEEEEEc--CeEeechhhhcCCcccccCcccHHHHhhcccccchhhhh
Confidence 4556777777665322 223799999988887766542 32222 00001111122222221 111223334
Q ss_pred cCCCceeEEEecceeccCCCCeeEEEEecHHHHHHHHHH------HHHHHHHHHHHHHHHcCC--CCCCCCeEEEecCcc
Q 047849 293 LSSTTQTDINLPFITADASGAKHLNITLTRSKFETLVNN------LIERTRAPCKNCLKDANI--TTKDVDEVLLVGGMT 364 (651)
Q Consensus 293 Ls~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~------~~~~i~~~i~~~l~~a~~--~~~~i~~VvLvGGss 364 (651)
+|......+. ... -.++-+|++|-+.+.. -++-+.-.+ +++-+++ -....+.|+|.|--+
T Consensus 212 Fs~aGavKia--~~~--------~~ve~arEEli~~~~k~ekarlaldtlal~v--amEIagL~~~~~~~d~v~laGsvg 279 (332)
T COG4020 212 FSTAGAVKIA--NCA--------GEVESAREELIQRYGKGEKARLALDTLALLV--AMEIAGLLMVVYGCDGVVLAGSVG 279 (332)
T ss_pred hhccCeEEEe--ccC--------ccchhHHHHHHHHhcCChhhhHHHHHHHHHH--HHHHhhhhceecCCceEEEecccc
Confidence 4444333321 111 1234456666555421 122222222 2233333 345678999999777
Q ss_pred CcHh---HHHHHHHHhcCCCCCcCCccchheehhHHHhhhccCCcceeE
Q 047849 365 RVPK---VQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRGDVKELL 410 (651)
Q Consensus 365 ~ip~---i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~~~~~~~ 410 (651)
-+.. +++.|+.....++ ..-|-++.+.|.|+.|.-++...+++.
T Consensus 280 ~~~ep~dv~~ri~~~v~~k~--~~l~~esaaiG~a~IA~DI~~Gkr~IL 326 (332)
T COG4020 280 GDREPMDVLKRIKSKVFNKV--AVLPPESAAIGLALIARDIASGKRSIL 326 (332)
T ss_pred cccchhhHHHHHHHHHHHHH--hhcCchhhhhhhHHHHHHHHcCcccee
Confidence 6666 6666665543221 233455689999999987765545543
No 170
>PLN03184 chloroplast Hsp70; Provisional
Probab=45.98 E-value=1e+02 Score=36.05 Aligned_cols=11 Identities=18% Similarity=0.700 Sum_probs=6.6
Q ss_pred CCCCCchhhhh
Q 047849 638 GEQTPEAEYEE 648 (651)
Q Consensus 638 ~~~~~~~~~~~ 648 (651)
++|..+++|++
T Consensus 663 ~~~~~~~~~~~ 673 (673)
T PLN03184 663 GDDVIDADFTD 673 (673)
T ss_pred CCceeccccCC
Confidence 44566677654
No 171
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=45.36 E-value=86 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCceE
Q 047849 178 MKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQ 221 (651)
Q Consensus 178 l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~ 221 (651)
+.+....+.... ....+..|+.++..||..+.+.|+..||...
T Consensus 4 ~~~~i~~F~~~~-~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 4 LKAMVKAFMKDP-KATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred HHHHHHHHHcCC-CcCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 344444444433 3478899999999999999999999999663
No 172
>PRK08868 flagellar protein FlaG; Provisional
Probab=44.83 E-value=59 Score=29.73 Aligned_cols=45 Identities=16% Similarity=0.338 Sum_probs=35.8
Q ss_pred eeEEEEEEcCC-eeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHh
Q 047849 491 QIEVTFDIDAN-GIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELH 542 (651)
Q Consensus 491 ~i~v~f~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~ 542 (651)
...+.|++|.+ |.+.|++.|..||.... .++++++-++.+.+.++
T Consensus 88 n~~L~F~vdeetgr~VVkViD~~T~EVIR-------QIP~Ee~L~la~~l~e~ 133 (144)
T PRK08868 88 NKGLSFRVDEESGRDVVTIYEASTGDIIR-------QIPDEEMLEVLRRLAEQ 133 (144)
T ss_pred cCceEEEEecCCCCEEEEEEECCCCceee-------eCCCHHHHHHHHHHHHh
Confidence 34799999886 88999999999998764 67888888887766543
No 173
>PRK07738 flagellar protein FlaG; Provisional
Probab=43.89 E-value=65 Score=28.39 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=35.3
Q ss_pred eEEEEEEcCC-eeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHHh
Q 047849 492 IEVTFDIDAN-GIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELH 542 (651)
Q Consensus 492 i~v~f~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~ 542 (651)
..+.|++|.+ |.+.|.+.|..|++... .++++++-++.+.+.++
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVIR-------QIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVIR-------EIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeeee-------eCCCHHHHHHHHHHHHH
Confidence 4789999885 89999999999998764 57788887777666553
No 174
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.98 E-value=2.5e+02 Score=24.87 Aligned_cols=43 Identities=2% Similarity=0.140 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Q 047849 579 SEVAKEIEDAVADLRKAMGADNVDDIKSKLDAANKAVSKIGQHM 622 (651)
Q Consensus 579 ~~~~~~~~~~l~~~~~wl~~~~~~~~~~k~~~l~~~~~~i~~~~ 622 (651)
..++.++.+.+++-.+.++.. .+.++.+.+.|+..+......+
T Consensus 66 ~qd~~e~~~~l~~r~E~ie~~-ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 66 KVDKTKVEKELKERKELLELR-SRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred hccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 446666666666666666643 4455555555555555544443
No 175
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=41.78 E-value=3.1e+02 Score=30.84 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=57.2
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHH-HHHHHHhcCCCCCcC-Cccchheehh
Q 047849 318 ITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQ-EVVSEIFGKSPSKGV-NPDEAVALGA 395 (651)
Q Consensus 318 ~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~-~~l~~~f~~~~~~~~-~p~~aVA~GA 395 (651)
....-.++...++..++++...+-.-+.+.. ..+.+.+.||.+..-... +.+.+-+...+...+ -.|.-.|.||
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHH
Confidence 3344456667777777777776666666532 156899999998877777 667766666665544 4567889999
Q ss_pred HHHhhhcc
Q 047849 396 AIQGGILR 403 (651)
Q Consensus 396 a~~a~~l~ 403 (651)
|+++....
T Consensus 330 Al~~~~~~ 337 (555)
T COG2192 330 ALAVKREL 337 (555)
T ss_pred HHHHHHHh
Confidence 99987543
No 176
>PLN03173 chalcone synthase; Provisional
Probab=41.04 E-value=87 Score=33.94 Aligned_cols=52 Identities=6% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCcc-CcHhHHHHHHHHhcCCC
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMT-RVPKVQEVVSEIFGKSP 381 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss-~ip~i~~~l~~~f~~~~ 381 (651)
+...+-..+.++++|+++++++.+||.|+++.-+. ..|.+--.|.+.+|.+.
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 34445556678999999999999999998876444 58999999999998654
No 177
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=40.81 E-value=88 Score=32.25 Aligned_cols=45 Identities=11% Similarity=0.306 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEE-ecCccCcHhHHHHHHHHhcCC
Q 047849 336 TRAPCKNCLKDANITTKDVDEVLL-VGGMTRVPKVQEVVSEIFGKS 380 (651)
Q Consensus 336 i~~~i~~~l~~a~~~~~~i~~VvL-vGGss~ip~i~~~l~~~f~~~ 380 (651)
+...|+++|+++++++.+||.+|. +..+.-.|.+-.+|-+.||..
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 456678899999999999998654 678899999999999999854
No 178
>PLN02377 3-ketoacyl-CoA synthase
Probab=40.32 E-value=57 Score=36.54 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEE-ecCccCcHhHHHHHHHHhcCC
Q 047849 325 FETLVNNLIERTRAPCKNCLKDANITTKDVDEVLL-VGGMTRVPKVQEVVSEIFGKS 380 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvL-vGGss~ip~i~~~l~~~f~~~ 380 (651)
++...+...+-+...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|.+
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 34444444555566778999999999999999987 445556899999999999864
No 179
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=40.15 E-value=72 Score=24.13 Aligned_cols=42 Identities=17% Similarity=0.348 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCce
Q 047849 176 TKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRIAGLDV 220 (651)
Q Consensus 176 ~~l~~~a~~~~~~~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~ 220 (651)
+.+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 2 ~~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 2 EDIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred hHHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 34556666666544 55779999 89999999999999999865
No 180
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=39.95 E-value=3.7e+02 Score=26.58 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=7.8
Q ss_pred CCCHHHHHHHHHHH
Q 047849 526 GLSEDEIEKMVKEA 539 (651)
Q Consensus 526 ~ls~~~i~~~~~~~ 539 (651)
.|+.+|++++..+.
T Consensus 39 ~l~nee~~eLk~qn 52 (230)
T PF03904_consen 39 SLENEEIQELKRQN 52 (230)
T ss_pred HHhHHHHHHHHHhh
Confidence 35566666665443
No 181
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=39.72 E-value=1.1e+02 Score=24.32 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=36.8
Q ss_pred eEEEEEEcCCeeEEEEEEecCCCceeeEEecC---CCCCCHHHHHHHHHHHHH
Q 047849 492 IEVTFDIDANGIVTVSAKDKATGKEQQITIRS---SGGLSEDEIEKMVKEAEL 541 (651)
Q Consensus 492 i~v~f~~d~~G~l~v~~~~~~t~~~~~~~i~~---~~~ls~~~i~~~~~~~~~ 541 (651)
....+.++.+|.++|...|..+|... +.++. ..-.|..+|.+++.+++.
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eLr~ 66 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAELRA 66 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHHHH
Confidence 46788899999999999999999862 33433 344677888888777654
No 182
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=39.70 E-value=47 Score=35.22 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc
Q 047849 333 IERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG 378 (651)
Q Consensus 333 ~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~ 378 (651)
++.+.+.+.++++.. .++.|+++||-+...+||+.|++.+.
T Consensus 248 ~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 248 FAMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 333444444555442 46789999999999999999999873
No 183
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=39.60 E-value=70 Score=28.26 Aligned_cols=42 Identities=21% Similarity=0.322 Sum_probs=31.5
Q ss_pred eEEEEEEcC-CeeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHH
Q 047849 492 IEVTFDIDA-NGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAE 540 (651)
Q Consensus 492 i~v~f~~d~-~G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~ 540 (651)
-.+.|++|. -|.+.|++.|..||+... .++++++-++.+.+.
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVIR-------qIPpee~L~l~~r~~ 109 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVIR-------QIPPEEALELAARMR 109 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcchh-------hCChHHHHHHHHHHH
Confidence 368899965 589999999999998763 567777666655443
No 184
>PLN03172 chalcone synthase family protein; Provisional
Probab=39.29 E-value=95 Score=33.69 Aligned_cols=52 Identities=8% Similarity=0.227 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCcc-CcHhHHHHHHHHhcCCC
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMT-RVPKVQEVVSEIFGKSP 381 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss-~ip~i~~~l~~~f~~~~ 381 (651)
+...+-..+.++++|+++++++.+||.|+++-.+. .+|.+--.|.+.+|.+.
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 44455566678999999999999999998776554 69999999999998654
No 185
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=38.97 E-value=72 Score=34.78 Aligned_cols=58 Identities=22% Similarity=0.320 Sum_probs=41.1
Q ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHH
Q 047849 316 LNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVS 374 (651)
Q Consensus 316 ~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~ 374 (651)
-.+.||..+++++.. --..+..-++-.|++++++..+|+.|+|.||+..---+++++.
T Consensus 291 ~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 468899999976643 2344666778889999999999999999999998777777665
No 186
>PRK08452 flagellar protein FlaG; Provisional
Probab=37.36 E-value=96 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=33.7
Q ss_pred eEEEEEEcCC-eeEEEEEEecCCCceeeEEecCCCCCCHHHHHHHHHHHHH
Q 047849 492 IEVTFDIDAN-GIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAEL 541 (651)
Q Consensus 492 i~v~f~~d~~-G~l~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~ 541 (651)
..+.|.+|.+ |.+.|++.|..|++... .++++++-++.+...+
T Consensus 71 ~~L~F~~de~~~~~vVkVvD~~T~eVIR-------qIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 71 TNIRFGYNDKIKGLVVSVKEANGGKVIR-------EIPSKEAIELMEYMRD 114 (124)
T ss_pred CceEEEEcCCCCcEEEEEEECCCCceee-------eCCCHHHHHHHHHHHH
Confidence 4788999775 78999999999998764 5777887777666554
No 187
>PLN03170 chalcone synthase; Provisional
Probab=37.19 E-value=82 Score=34.26 Aligned_cols=52 Identities=10% Similarity=0.250 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCcc-CcHhHHHHHHHHhcCCC
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMT-RVPKVQEVVSEIFGKSP 381 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss-~ip~i~~~l~~~f~~~~ 381 (651)
+...+-..+..+++|+++|+++++||.|+++-.+. .+|.+.-.|.+.+|.+.
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 156 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRP 156 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCc
Confidence 44455566778999999999999999988776544 69999999999998654
No 188
>PLN03168 chalcone synthase; Provisional
Probab=36.85 E-value=1.1e+02 Score=33.24 Aligned_cols=53 Identities=11% Similarity=0.299 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCc-cCcHhHHHHHHHHhcCCC
Q 047849 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGM-TRVPKVQEVVSEIFGKSP 381 (651)
Q Consensus 329 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGs-s~ip~i~~~l~~~f~~~~ 381 (651)
.+...+-..+..+++|+++++++++||.|+++-.+ -.+|.+--.|.+.+|.+.
T Consensus 98 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 98 VVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 34455556778899999999999999999876432 358999999999998654
No 189
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=36.77 E-value=25 Score=31.62 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=15.2
Q ss_pred EEEEcCCceEEEEEEeC
Q 047849 60 IGIDLGTTNSCVALMEG 76 (651)
Q Consensus 60 vGID~GTt~s~va~~~~ 76 (651)
+|||+|+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998765
No 190
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=35.70 E-value=21 Score=32.99 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=14.3
Q ss_pred EEEEEcCCceEEEEEEeC
Q 047849 59 IIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~ 76 (651)
|+|||-|++++..|+.+.
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 689999999999999854
No 191
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.45 E-value=3.9e+02 Score=28.61 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047849 603 DIKSKLDAANKAVSKIGQH 621 (651)
Q Consensus 603 ~~~~k~~~l~~~~~~i~~~ 621 (651)
.+...+++|...++.|+.+
T Consensus 330 ~i~~~l~ql~rql~~il~~ 348 (497)
T KOG3838|consen 330 AIHKQLAQLERQLDKILGP 348 (497)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 4666777788888877755
No 192
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=35.40 E-value=32 Score=33.64 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=18.5
Q ss_pred CCCCcEEEEEcCCceEEEEEEe
Q 047849 54 PAGNDIIGIDLGTTNSCVALME 75 (651)
Q Consensus 54 ~~~~~vvGID~GTt~s~va~~~ 75 (651)
.....+++||||.||..|+++.
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEE
Confidence 3455789999999999999874
No 193
>PRK12408 glucokinase; Provisional
Probab=34.98 E-value=27 Score=36.97 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.0
Q ss_pred CCCCCcEEEEEcCCceEEEEEEeC
Q 047849 53 KPAGNDIIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 53 ~~~~~~vvGID~GTt~s~va~~~~ 76 (651)
++++..++|||+|.|++++++++.
T Consensus 12 ~~~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 12 VPRPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred CcccccEEEEEcChhhhheeEEec
Confidence 445566899999999999999964
No 194
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=34.73 E-value=71 Score=36.15 Aligned_cols=49 Identities=24% Similarity=0.228 Sum_probs=35.9
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHh---cCCCCCcC---CccchheehhHHHhhh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIF---GKSPSKGV---NPDEAVALGAAIQGGI 401 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f---~~~~~~~~---~p~~aVA~GAa~~a~~ 401 (651)
.++.|+|+||.+...++++.|.+.+ +.++..+. -.|.++++|++.+...
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~ 299 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMY 299 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHH
Confidence 4568999999999999999999766 33333332 4577888888765443
No 195
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=34.32 E-value=1.1e+02 Score=31.24 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=24.4
Q ss_pred cCCceEEeecchHHHhhhhcc--ccCCCeEEEEEeCCc
Q 047849 216 AGLDVQRIINEPTAASLSYGM--NNKEGLIAVFDLGGG 251 (651)
Q Consensus 216 AGl~~~~li~Ep~AAAl~y~~--~~~~~~vlVvD~Ggg 251 (651)
.|++ +.+.|+..|+|++-.. .+..++++++-+|.|
T Consensus 96 ~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G 132 (291)
T PRK05082 96 TDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG 132 (291)
T ss_pred hCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC
Confidence 4776 4799999999986432 222237888888855
No 196
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.69 E-value=3e+02 Score=32.20 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 581 VAKEIEDAVADLRKAMGADN---VDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 581 ~~~~~~~~l~~~~~wl~~~~---~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
+-+.++..+.++.+-++... .+.|+..++.|+..-.++.+++++
T Consensus 564 eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~lel~~~ 610 (1118)
T KOG1029|consen 564 EIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKALELIGE 610 (1118)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555566655555542 566777777777666666666664
No 197
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=33.41 E-value=38 Score=36.09 Aligned_cols=45 Identities=24% Similarity=0.260 Sum_probs=32.8
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcC--CCC--CcCCccchheehhHH
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGK--SPS--KGVNPDEAVALGAAI 397 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~--~~~--~~~~p~~aVA~GAa~ 397 (651)
++|.|++.||.+..+.+.+.+.+.+.. ++. ...+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 678999999999999999999988852 222 223445677777753
No 198
>PRK14878 UGMP family protein; Provisional
Probab=32.90 E-value=82 Score=33.14 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.9
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIF 377 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f 377 (651)
.+..|+|+||.+...++++.+.+.+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 199
>PRK13331 pantothenate kinase; Reviewed
Probab=32.35 E-value=56 Score=33.03 Aligned_cols=23 Identities=13% Similarity=0.357 Sum_probs=19.6
Q ss_pred CCcEEEEEcCCceEEEEEEeCCc
Q 047849 56 GNDIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~~~ 78 (651)
.+.++.||.|+|+++++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECCE
Confidence 44589999999999999998653
No 200
>PLN02854 3-ketoacyl-CoA synthase
Probab=32.16 E-value=93 Score=35.01 Aligned_cols=45 Identities=4% Similarity=0.206 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEE-ecCccCcHhHHHHHHHHhcCC
Q 047849 336 TRAPCKNCLKDANITTKDVDEVLL-VGGMTRVPKVQEVVSEIFGKS 380 (651)
Q Consensus 336 i~~~i~~~l~~a~~~~~~i~~VvL-vGGss~ip~i~~~l~~~f~~~ 380 (651)
+...++++|+++|+++++||.||+ +.+....|.+-.+|.+.+|.+
T Consensus 192 ~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 192 MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 445567888999999999999987 445556899999999999864
No 201
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=32.11 E-value=2.5e+02 Score=29.05 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCCCCcCCccchheehhHHHhhh
Q 047849 369 VQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGI 401 (651)
Q Consensus 369 i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~ 401 (651)
+++.|++.|+.++...-| -.++|.|=.++++.
T Consensus 98 l~~~L~~~~~~Pv~veND-an~aalaE~~~g~~ 129 (314)
T COG1940 98 LAEELEARLGLPVFVEND-ANAAALAEAWFGAG 129 (314)
T ss_pred HHHHHHHHHCCCEEEecH-HHHHHHHHHHhCCC
Confidence 799999999976554333 34677887777764
No 202
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=31.98 E-value=4.4e+02 Score=28.96 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHHHHHHHHHHhhcccC---------CCHHHHHHHHHHHHHHHHHh
Q 047849 530 DEIEKMVKEAELHAQ----RDNERKALIDIRNQADTTIYSIEKSLGEYREK---------IPSEVAKEIEDAVADLRKAM 596 (651)
Q Consensus 530 ~~i~~~~~~~~~~~~----~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~---------~~~~~~~~~~~~l~~~~~wl 596 (651)
+++.++++++.++.+ -+++.|+...--|.++++...|+.+..++... ..+++.+.+.+..+++..-+
T Consensus 281 ~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 445555555555443 35556666666788888888888776543211 22445555555555555555
Q ss_pred ccCC
Q 047849 597 GADN 600 (651)
Q Consensus 597 ~~~~ 600 (651)
..++
T Consensus 361 ~kq~ 364 (622)
T COG5185 361 RKQG 364 (622)
T ss_pred HhcC
Confidence 5443
No 203
>PRK00292 glk glucokinase; Provisional
Probab=31.90 E-value=43 Score=34.94 Aligned_cols=44 Identities=34% Similarity=0.368 Sum_probs=29.1
Q ss_pred HHcCCceEEeecchHHHhhhhcc-----------ccC--CCeEEEEEeCCcceEEEEE
Q 047849 214 RIAGLDVQRIINEPTAASLSYGM-----------NNK--EGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 214 ~~AGl~~~~li~Ep~AAAl~y~~-----------~~~--~~~vlVvD~GggT~Dvsv~ 258 (651)
+..|++.+.+.|+-.|+|++-.. .+. .++++++-+|.| +-.+++
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 34588767999999999997432 221 137888888866 333433
No 204
>PRK13328 pantothenate kinase; Reviewed
Probab=31.77 E-value=1.5e+02 Score=30.02 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 322 RSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 322 r~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
++.-+.+-..++..+...|+..+++..-...+--.|+++||.+. .|...+.. ....+|+ -|-.|..+++.
T Consensus 183 ~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~~~~vi~TGGda~------~l~~~l~~--~~~~~p~-LvL~GL~~i~~ 252 (255)
T PRK13328 183 DDTPDAISAGCLAAQAGLIERAWRDLAARWQAPVRLVLSGGAAD------AVAPALTV--PHTRHDN-LVLLGLALIAA 252 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHH------HHHhhCCC--CCEECCC-cHHHHHHHHHh
Confidence 44445555566666666666555543211111237999999974 23333322 1233455 57777766543
No 205
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.76 E-value=5.3e+02 Score=29.42 Aligned_cols=87 Identities=13% Similarity=0.279 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCCC--HHHHHHHHHHHHHHHHHhccCCHH
Q 047849 529 EDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG----EYREKIP--SEVAKEIEDAVADLRKAMGADNVD 602 (651)
Q Consensus 529 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~----~~~~~~~--~~~~~~~~~~l~~~~~wl~~~~~~ 602 (651)
++++..+...+..+...+++.+... ..|......+++.+. .|...++ ++....+....+++.+|..+.|..
T Consensus 114 e~~i~~i~~~l~~L~~~e~~nr~~i---~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~ 190 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKNREEI---EELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYL 190 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3455566666666555544433322 223333334444442 2222222 445666777777778888887755
Q ss_pred HHHHHHHHHHHHHHHH
Q 047849 603 DIKSKLDAANKAVSKI 618 (651)
Q Consensus 603 ~~~~k~~~l~~~~~~i 618 (651)
+-++.+..++..+..+
T Consensus 191 ~A~eil~~l~~~~~~l 206 (560)
T PF06160_consen 191 EAREILEKLKEETDEL 206 (560)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555544444443
No 206
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=31.70 E-value=47 Score=37.00 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCceEEEEEEeC
Q 047849 56 GNDIIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~ 76 (651)
...++|||.|||.+.+++++.
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~ 25 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNA 25 (516)
T ss_pred cceEEEEEcCCCceEEEEEec
Confidence 345899999999999999973
No 207
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=31.49 E-value=97 Score=23.81 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=26.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCceE
Q 047849 192 KAVITVPAYFNDAQRQATKDAGRIAGLDVQ 221 (651)
Q Consensus 192 ~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~ 221 (651)
.-.++.|+.++..+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 566777999999999999999999999763
No 208
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=30.77 E-value=1.8e+02 Score=27.13 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHHHHHHHhhCCCCCeEEEEecCCCCHHH----------------HHHHHHHHHHcCCceEEeecchHH
Q 047849 166 SPSQIGAFVLTKMKETAESYLGKSVSKAVITVPAYFNDAQ----------------RQATKDAGRIAGLDVQRIINEPTA 229 (651)
Q Consensus 166 s~eev~a~~L~~l~~~a~~~~~~~~~~~VITVPa~f~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~A 229 (651)
+++++...+.+.+.+...++-.. .+.|++|..++... .+.+.+ ..++++ .+.++-.|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~~~---gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~pv-~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYGRS---GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVPV-IIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCE---EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSEE-EEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcccc---cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceEE-EEecCCCc
Confidence 56777776666666555544211 56666665443221 233333 336655 79999999
Q ss_pred HhhhhccccC---CCeEEEEEeCCcceEEEEE
Q 047849 230 ASLSYGMNNK---EGLIAVFDLGGGTFDVSIL 258 (651)
Q Consensus 230 AAl~y~~~~~---~~~vlVvD~GggT~Dvsv~ 258 (651)
+|++...... .++++.+-+|-| +-.+++
T Consensus 104 ~a~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCccCCcceEEEEEeecC-CCccee
Confidence 9988655322 238888888876 455555
No 209
>PRK13326 pantothenate kinase; Reviewed
Probab=30.39 E-value=51 Score=33.57 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.5
Q ss_pred cEEEEEcCCceEEEEEEeCCc
Q 047849 58 DIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~ 78 (651)
.++.||.|+|+++++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 478999999999999998754
No 210
>PRK13320 pantothenate kinase; Reviewed
Probab=30.17 E-value=55 Score=32.93 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.4
Q ss_pred cEEEEEcCCceEEEEEEeCCc
Q 047849 58 DIIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~~ 78 (651)
.++.||.|+|+++.+++++++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 389999999999999998653
No 211
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=29.86 E-value=1.1e+02 Score=31.57 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC---------CCCcCCccchheehhHHHh
Q 047849 331 NLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS---------PSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 331 ~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~---------~~~~~~p~~aVA~GAa~~a 399 (651)
.++++....+-..|...- ..-+++.|+|-||.+..+.+.+.|++.+... +....-.+.+.++|||..+
T Consensus 224 ~~~~~~~~~la~~l~n~~-~~ldP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 224 AHVERYLDLLAICLGNIL-TIVDPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcCCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 344444444444443311 1134568888777776666666666665311 1122344567888998765
No 212
>PRK09557 fructokinase; Reviewed
Probab=29.26 E-value=1.4e+02 Score=30.70 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCeEEEecCccCcHhHHHHHHHHhcC---------CCCCcCCccchheehhHHHh
Q 047849 353 DVDEVLLVGGMTRVPKVQEVVSEIFGK---------SPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 353 ~i~~VvLvGGss~ip~i~~~l~~~f~~---------~~~~~~~p~~aVA~GAa~~a 399 (651)
+++.|+|-||.+..+.+.+.|++.+.. ++....-.+.+.++||++..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 456888888887776666556655521 11122334567888988753
No 213
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=29.19 E-value=66 Score=28.16 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCc--HhHHHHHHHHhcC
Q 047849 333 IERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV--PKVQEVVSEIFGK 379 (651)
Q Consensus 333 ~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~i--p~i~~~l~~~f~~ 379 (651)
-......|+++|+++++++.+|+.|..-|-++.. +.=.+.|++.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3455677899999999999999999998866664 3334568888864
No 214
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=28.76 E-value=1.5e+02 Score=30.52 Aligned_cols=49 Identities=27% Similarity=0.323 Sum_probs=32.0
Q ss_pred eEEEecCcc-CcHhHHHHHHHHhcC----CCCCcCCccchheehhHHHhhhccC
Q 047849 356 EVLLVGGMT-RVPKVQEVVSEIFGK----SPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 356 ~VvLvGGss-~ip~i~~~l~~~f~~----~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
.|++|||.- ....+++-....+.. +-.....|.++-|.|||++|+.+.+
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 699999974 344444443333311 2234568899999999999997543
No 215
>PRK10972 Z-ring-associated protein; Provisional
Probab=28.13 E-value=4e+02 Score=23.17 Aligned_cols=63 Identities=2% Similarity=0.048 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHH
Q 047849 553 IDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGAD-----NVDDIKSKLDAANKAVSKIGQ 620 (651)
Q Consensus 553 ~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~-----~~~~~~~k~~~l~~~~~~i~~ 620 (651)
.++-+.|+.-+.++++. ..+...|+-.+..+|+=..+++... +..++++++..|.+.++..+.
T Consensus 28 ~~AA~~Ld~km~~ir~~-----~kv~~~EriavmaALNl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~AL~ 95 (109)
T PRK10972 28 NQAAEDLNQRLQDLKER-----TRVTNTEQLVFIAALNICYELAQEKAKTRDYAANMEQRIRMLQQTIEQALL 95 (109)
T ss_pred HHHHHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443 2456678888999999999998542 367889999999999988764
No 216
>PRK11637 AmiB activator; Provisional
Probab=27.74 E-value=5.2e+02 Score=28.23 Aligned_cols=68 Identities=10% Similarity=0.130 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 552 LIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGAD--NVDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 552 ~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~--~~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
.....++++.-+..+...|... ..+.+.+...+++++.-+..- .....+.+++.+++.+...+..+|.
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~-----~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQA-----SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444422 222233334444443333221 2556677777777778877777776
No 217
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=27.36 E-value=2.8e+02 Score=23.25 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHH
Q 047849 524 SGGLSEDEIEKMVKEAEL-HAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADL 592 (651)
Q Consensus 524 ~~~ls~~~i~~~~~~~~~-~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 592 (651)
++..+++|++.+..-... +...+.+..+..+.-+....-..++......+...++.+.|..+.+.+-.+
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~v 82 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEV 82 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467889998888777665 444444444444433333222223333333333344666776666555443
No 218
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.22 E-value=5.1e+02 Score=29.53 Aligned_cols=60 Identities=8% Similarity=0.235 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHH
Q 047849 547 NERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADN--VDDIKSKLDAAN 612 (651)
Q Consensus 547 ~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~--~~~~~~k~~~l~ 612 (651)
+.++++.+++++|+++...++.... -.-+.+.....++.++.-|.+.. .+.++.++.+|+
T Consensus 447 e~k~eie~L~~~l~~~~r~~~~~~~------~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 447 ELKREIEKLESELERFRREVRDKVR------KDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666655554332 12344445566666666665543 667777777777
No 219
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=26.84 E-value=1.4e+02 Score=31.14 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh-cCCCCCcCCccchheehhHHHh
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF-GKSPSKGVNPDEAVALGAAIQG 399 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f-~~~~~~~~~p~~aVA~GAa~~a 399 (651)
.+-+-+.+-+.+.+++.++. ..++.|+|.||.+...++++.|.+.+ ......-..|..-.--|+++.|
T Consensus 237 sfq~~l~~~l~~~~~~~~~~-----~g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~DnGiMIa 305 (305)
T TIGR00329 237 SFQETAFDHLIEKTKRALKD-----TGPKELVLVGGVSANKRLREMLETLCQELNVEFYYPPLEFCSDNGAMIA 305 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----cCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCccHHhcC
No 220
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.57 E-value=1.1e+02 Score=32.85 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcC
Q 047849 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGK 379 (651)
Q Consensus 329 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~ 379 (651)
++...+.+...|+++|+++++++.+||.+++-+++.++- ...+++.||.
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~--d~~~~~llg~ 314 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN--QLIGKKVLGR 314 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH--HHHHHHhccC
Confidence 455667777889999999999999999999999987632 2234444663
No 221
>PLN02192 3-ketoacyl-CoA synthase
Probab=26.54 E-value=1.4e+02 Score=33.42 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEec-CccCcHhHHHHHHHHhcCC
Q 047849 325 FETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVG-GMTRVPKVQEVVSEIFGKS 380 (651)
Q Consensus 325 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvG-Gss~ip~i~~~l~~~f~~~ 380 (651)
+++..++...-+...++++|+++|+++.+||.||... +....|.+-.+|.+.+|..
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 3444444444456677899999999999999887653 3345899999999999864
No 222
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=26.37 E-value=2.2e+02 Score=32.80 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhccCC--------------HHHHHHHHHHHHHHHHHHHHH
Q 047849 581 VAKEIEDAVADLRKAMGADN--------------VDDIKSKLDAANKAVSKIGQH 621 (651)
Q Consensus 581 ~~~~~~~~l~~~~~wl~~~~--------------~~~~~~k~~~l~~~~~~i~~~ 621 (651)
+.++....+++.+.|++... ..+++.+.++|.+.+.++..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 66778888899999997641 377888888888888887643
No 223
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=25.98 E-value=43 Score=37.18 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=15.4
Q ss_pred EEEEcCCceEEEEEEeC
Q 047849 60 IGIDLGTTNSCVALMEG 76 (651)
Q Consensus 60 vGID~GTt~s~va~~~~ 76 (651)
||||+|||++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 59999999999999974
No 224
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.98 E-value=1.7e+02 Score=29.56 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=29.2
Q ss_pred EEeecchHHHhhhhccccCCCeEEEEEeCCcceEEEEEE
Q 047849 221 QRIINEPTAASLSYGMNNKEGLIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 221 ~~li~Ep~AAAl~y~~~~~~~~vlVvD~GggT~Dvsv~~ 259 (651)
..+++.-.||+.....+......||+|+|-|.+..+++.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvd 245 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVD 245 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEec
Confidence 345666666666666665555899999999999998885
No 225
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=25.91 E-value=5.9e+02 Score=27.01 Aligned_cols=76 Identities=24% Similarity=0.398 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHHHH---HHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 047849 530 DEIEKMVKEAELHAQRDNERKALIDIRNQA---DTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADNVDDIKS 606 (651)
Q Consensus 530 ~~i~~~~~~~~~~~~~d~~~~~~~~~~n~l---e~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~ 606 (651)
++++.+.+++..--+.-....++.+.|+.+ ...+..+-+.|. .++.++|.++-..++++++-++. .+.+
T Consensus 3 ~~~~~~~~~~~~~i~~~~~~~~l~~~r~~~lgkkg~l~~~~~~l~----~l~~eer~~~G~~~n~~k~~~~~----~~~~ 74 (339)
T PRK00488 3 EDLEELVEEALAAIAAASDLEALEALRVKYLGKKGELTELLKGLG----KLPPEERKEAGALINELKQAIEA----ALEE 74 (339)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCchHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 445555554433322222334455555543 233444433433 46899999999999999877654 3444
Q ss_pred HHHHHHH
Q 047849 607 KLDAANK 613 (651)
Q Consensus 607 k~~~l~~ 613 (651)
+.++|+.
T Consensus 75 ~~~~l~~ 81 (339)
T PRK00488 75 RKEELEA 81 (339)
T ss_pred HHHHHHH
Confidence 4444443
No 226
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=2.1e+02 Score=30.33 Aligned_cols=47 Identities=11% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhc
Q 047849 332 LIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFG 378 (651)
Q Consensus 332 ~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~ 378 (651)
.+..+.+-...+++.+.+.++.+...|+.||-++..+|+.+|....+
T Consensus 284 v~~Hi~~Kt~~ai~~~~l~~~~~~~lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 284 VFRHISSKTHRAIKSLLLQPKNVKQLVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCceEEEcCCccchHHHHHHHHHHHH
Confidence 44444445555555555667778899999999999999999998764
No 227
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.29 E-value=8e+02 Score=25.67 Aligned_cols=80 Identities=10% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccCC------
Q 047849 527 LSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGADN------ 600 (651)
Q Consensus 527 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~------ 600 (651)
.+++++.++.+++.+.. .+.........+++.-+..++..+++ ..+++.++.+.+++++.-++...
T Consensus 201 ~d~~eL~~lk~~l~~~~---~ei~~~~~~l~e~~~~l~~l~~~I~~-----~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 201 CDPTELDRAKEKLKKLL---QEIMIKVKKLEELEEELQELESKIED-----LTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 45666666664444332 22222222222333333344444442 24567777888888877665432
Q ss_pred HHHHHHHHHHHHHH
Q 047849 601 VDDIKSKLDAANKA 614 (651)
Q Consensus 601 ~~~~~~k~~~l~~~ 614 (651)
...++.+++.|+..
T Consensus 273 i~~Lk~~~~~Le~l 286 (312)
T smart00787 273 IEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555543
No 228
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=25.13 E-value=2.6e+02 Score=23.82 Aligned_cols=14 Identities=0% Similarity=0.107 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhccC
Q 047849 586 EDAVADLRKAMGAD 599 (651)
Q Consensus 586 ~~~l~~~~~wl~~~ 599 (651)
.+.-..+.+||+.+
T Consensus 108 sEsEK~IleWL~KN 121 (122)
T PLN00078 108 TESEKGILEWLDKN 121 (122)
T ss_pred CHHHHHHHHHHHcc
Confidence 33444567788765
No 229
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=25.12 E-value=2e+02 Score=31.19 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCcc-CcHhHHHHHHHHhc
Q 047849 329 VNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMT-RVPKVQEVVSEIFG 378 (651)
Q Consensus 329 ~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss-~ip~i~~~l~~~f~ 378 (651)
++-++.++.+.|-...... ...+|.|+++||.+ ..+.|++.|.+.+.
T Consensus 302 ~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 302 LDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3445555555555444443 14699999999999 99999999998764
No 230
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=24.95 E-value=38 Score=37.15 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.6
Q ss_pred eEEEEEeCCcceEEEEEE
Q 047849 242 LIAVFDLGGGTFDVSILE 259 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~ 259 (651)
.+|++|+||-|||+-.+.
T Consensus 250 ~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 250 DFILIDIGGATTDVHSAA 267 (463)
T ss_pred CEEEEEcCccccchhhcc
Confidence 599999999999987654
No 231
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.78 E-value=1.5e+02 Score=23.26 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=31.9
Q ss_pred hhhhhhhhCCCCCChHHHHHhhcceeEEEECCCCCeEEEe---CCeeeChhhHHHHHHH
Q 047849 121 LFGTKRLIGRKFDDPQTQKEMQMVSYKIVRAPNGDAWVEA---NGQQYSPSQIGAFVLT 176 (651)
Q Consensus 121 i~~~Kr~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~---~~~~~s~eev~a~~L~ 176 (651)
...+++++|...+...+.+.++.+.|.+....++...+.. ......+++++.++++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHH
Confidence 3467899999998888888899999988764333333331 2223455555555543
No 232
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=24.38 E-value=81 Score=34.25 Aligned_cols=26 Identities=31% Similarity=0.749 Sum_probs=22.8
Q ss_pred CeEEEEEeCCcceEEEEEEEe-ccccc
Q 047849 241 GLIAVFDLGGGTFDVSILEIS-NGVFE 266 (651)
Q Consensus 241 ~~vlVvD~GggT~Dvsv~~~~-~~~~~ 266 (651)
+.+|++|+||..+-++++++. ++.|+
T Consensus 75 g~~LaiD~GGTnlRvc~V~l~g~gt~~ 101 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVVLGGDGTFD 101 (466)
T ss_pred CCEEEEecCCceEEEEEEEeCCCCCcc
Confidence 489999999999999999998 45665
No 233
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=24.38 E-value=1.9e+02 Score=33.37 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 047849 553 IDIRNQADTTIYSIEKSLG 571 (651)
Q Consensus 553 ~~~~n~le~~i~~~~~~l~ 571 (651)
.+.++.++..+.++++.|+
T Consensus 534 ~~~~~~i~~~~~~~~~~l~ 552 (595)
T PRK01433 534 ESEISIINSLLDNIKEAVH 552 (595)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456777888888888886
No 234
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=24.26 E-value=36 Score=37.61 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.2
Q ss_pred EEEEcCCceEEEEEEeC
Q 047849 60 IGIDLGTTNSCVALMEG 76 (651)
Q Consensus 60 vGID~GTt~s~va~~~~ 76 (651)
+|||+|||++++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999999864
No 235
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=23.86 E-value=89 Score=29.14 Aligned_cols=73 Identities=15% Similarity=0.285 Sum_probs=48.4
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhH
Q 047849 317 NITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAA 396 (651)
Q Consensus 317 ~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa 396 (651)
.+-|-.++|++. +.+++.+-..+.|...|....++ .|+-|=|+=-+|++-+.+.+. -+.|-.|+.||.
T Consensus 12 riaIV~srfn~~---It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~--------~~yDaiIaLG~V 79 (158)
T PRK12419 12 RIAFIQARWHAD---IVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT--------GRYAAIVAAALV 79 (158)
T ss_pred EEEEEEecCCHH---HHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc--------CCCCEEEEEEEE
Confidence 444444455433 33344444456677888766667 777899999999998777532 346778999998
Q ss_pred HHhhh
Q 047849 397 IQGGI 401 (651)
Q Consensus 397 ~~a~~ 401 (651)
+.+..
T Consensus 80 IrGeT 84 (158)
T PRK12419 80 VDGGI 84 (158)
T ss_pred EcCCC
Confidence 87653
No 236
>PLN03171 chalcone synthase-like protein; Provisional
Probab=23.79 E-value=3.5e+02 Score=29.37 Aligned_cols=52 Identities=13% Similarity=0.292 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCc-cCcHhHHHHHHHHhcCCC
Q 047849 330 NNLIERTRAPCKNCLKDANITTKDVDEVLLVGGM-TRVPKVQEVVSEIFGKSP 381 (651)
Q Consensus 330 ~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGs-s~ip~i~~~l~~~f~~~~ 381 (651)
+...+-..+..+++|+++++++++||.|+++-.+ -..|...-.|.+.+|.+.
T Consensus 106 ~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LGl~~ 158 (399)
T PLN03171 106 DAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLGLRP 158 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhCCCc
Confidence 4566667778899999999999999999883221 237999999999998643
No 237
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.61 E-value=6.9e+02 Score=24.32 Aligned_cols=17 Identities=0% Similarity=0.093 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047849 606 SKLDAANKAVSKIGQHM 622 (651)
Q Consensus 606 ~k~~~l~~~~~~i~~~~ 622 (651)
..+.+|+.....+...+
T Consensus 164 ~A~~el~~~a~e~A~~I 180 (204)
T PRK09174 164 KAMADVGSIAEETAAAI 180 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544433
No 238
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=23.57 E-value=1.2e+02 Score=27.23 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=17.7
Q ss_pred EEEEEcCCceEEEEEEeCCc
Q 047849 59 IIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~ 78 (651)
+||||+|-....+++...++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 58999999999999987665
No 239
>PRK13320 pantothenate kinase; Reviewed
Probab=23.33 E-value=1.6e+02 Score=29.50 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccC
Q 047849 321 TRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTR 365 (651)
Q Consensus 321 tr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ 365 (651)
-++.-+.+-..++......|+..+++..-...+ -.|+++||.+.
T Consensus 172 g~~T~~ai~sG~~~~~~~~i~~~i~~~~~~~~~-~~vi~TGG~a~ 215 (244)
T PRK13320 172 GRSTEECIRSGVVWGCVAEIEGLIEAYKSKLPE-LLVILTGGDAP 215 (244)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCCHH
Confidence 344455555555555555555554442211112 37999999974
No 240
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=23.27 E-value=1e+03 Score=28.12 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccC-----------C----HHHHHHHHHHHHHHHHHHHHHHhc
Q 047849 576 KIPSEVAKEIEDAVADLRKAMGAD-----------N----VDDIKSKLDAANKAVSKIGQHMAG 624 (651)
Q Consensus 576 ~~~~~~~~~~~~~l~~~~~wl~~~-----------~----~~~~~~k~~~l~~~~~~i~~~~~~ 624 (651)
.++..+...|.+.+++...|+... + .+++.+|.+.|...+...+.++..
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~ 837 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKI 837 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 356778899999999999998542 1 678889999999999999988764
No 241
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=23.15 E-value=1.1e+02 Score=28.95 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=33.6
Q ss_pred CCCCCeEEEecCccCc-----Hh---HHHHHHHHhcCCCCCcCCccchheehhHHHhhhccC
Q 047849 351 TKDVDEVLLVGGMTRV-----PK---VQEVVSEIFGKSPSKGVNPDEAVALGAAIQGGILRG 404 (651)
Q Consensus 351 ~~~i~~VvLvGGss~i-----p~---i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~l~~ 404 (651)
..++|.|+|.||.... ++ +.+.|+...... -|-.+++.|+-+.+..+.+
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~-----~pilgiC~G~q~l~~~lGG 100 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAG-----KPVLGICLGHQLLARALGG 100 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCC-----CCEEEECccHHHHHHHhCC
Confidence 4678999999998644 33 444555554322 4778999999888776654
No 242
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=23.01 E-value=6.1e+02 Score=23.61 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCCHHHHHHHHHHHHHHH
Q 047849 526 GLSEDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLGEYR--EKIPSEVAKEIEDAVADLR 593 (651)
Q Consensus 526 ~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~ 593 (651)
.+|.|--+.+.+.+..+.++-+ ...|| .-.+..+.+.... ..+++++...+.+.++++-
T Consensus 86 ~~T~E~R~~l~k~~k~~~E~~k-----~~iR~----iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~ 146 (165)
T PF01765_consen 86 PPTEERRKELVKQAKKIAEEAK-----VSIRN----IRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLT 146 (165)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH-----HHHHH----HHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-----HHHHH----HHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHH
Confidence 5788888888877776553322 22222 2222223332222 2377888777777777764
No 243
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=22.59 E-value=8.8e+02 Score=27.69 Aligned_cols=83 Identities=13% Similarity=0.248 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHh----hcccCCC--HHHHHHHHHHHHHHHHHhccCCHH
Q 047849 529 EDEIEKMVKEAELHAQRDNERKALIDIRNQADTTIYSIEKSLG----EYREKIP--SEVAKEIEDAVADLRKAMGADNVD 602 (651)
Q Consensus 529 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~le~~i~~~~~~l~----~~~~~~~--~~~~~~~~~~l~~~~~wl~~~~~~ 602 (651)
++++..+...+..+...+++.+.. ...+...-..+++.+- .|.+.++ +.....+....+.+.+|..+.|..
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr~~---v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~ 194 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNREE---VEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYV 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 455666666666665555443332 2233333444555553 2323222 446667777778888888887744
Q ss_pred HHHHHHHHHHHH
Q 047849 603 DIKSKLDAANKA 614 (651)
Q Consensus 603 ~~~~k~~~l~~~ 614 (651)
+-+..+..++..
T Consensus 195 ~A~e~l~~l~~~ 206 (569)
T PRK04778 195 EAREILDQLEEE 206 (569)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 244
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=22.09 E-value=2.3e+02 Score=28.43 Aligned_cols=115 Identities=17% Similarity=0.037 Sum_probs=0.0
Q ss_pred HhhhhccccCCCeEEEEEeCCcceEEEEEEEecccccccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceecc
Q 047849 230 ASLSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEDEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITAD 309 (651)
Q Consensus 230 AAl~y~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~ 309 (651)
|+...+.....+.++|+|+| |-+++--+....--..|.=...-...+..|.....+....-.
T Consensus 105 a~~~aA~~~~~~~~lViD~G---TA~Tid~v~~~g~~~GG~I~PG~~l~~~aL~~~Ta~Lp~v~~--------------- 166 (243)
T TIGR00671 105 ANALAAIKFYGFNVVVVDAG---TALTIDLVDQEGKFLGGAIAPGLGISLHALKDRAAALPKFEI--------------- 166 (243)
T ss_pred HHHHHHHHHcCCCEEEEEcC---CceEEEEEcCCCeEEEEEECccHHHHHHHHHhhHhcCCCCCc---------------
Q ss_pred CCCCeeEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCc
Q 047849 310 ASGAKHLNITLTRSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRV 366 (651)
Q Consensus 310 ~~g~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~i 366 (651)
......+-++.-+.+-..++......|+..+++..-....--.|+++||.+..
T Consensus 167 ----~~~~~~~g~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 167 ----ARPDEVLGKSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred ----CCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
No 245
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=21.81 E-value=1.1e+02 Score=31.37 Aligned_cols=17 Identities=47% Similarity=0.495 Sum_probs=15.5
Q ss_pred EEEEEcCCceEEEEEEe
Q 047849 59 IIGIDLGTTNSCVALME 75 (651)
Q Consensus 59 vvGID~GTt~s~va~~~ 75 (651)
.||||.|+|.+++++..
T Consensus 2 ~iGiDiGgT~~Kiv~~~ 18 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEE 18 (279)
T ss_pred eEEEEeCcceEEEEEEc
Confidence 58999999999999975
No 246
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=21.80 E-value=1.1e+02 Score=29.86 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=16.6
Q ss_pred EEEEEcCCceEEEEEEeCCc
Q 047849 59 IIGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~~ 78 (651)
++-||+|+|+++++++++++
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 47899999999999998764
No 247
>PRK14878 UGMP family protein; Provisional
Probab=21.72 E-value=1.2e+02 Score=31.86 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHH------HHHHHhcCCCCCcCCccchhee
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQE------VVSEIFGKSPSKGVNPDEAVAL 393 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~------~l~~~f~~~~~~~~~p~~aVA~ 393 (651)
...+...+.+...++++|++++++..+||.|.++-|-...+.++- .|...++.+ ...++..++=+.
T Consensus 39 ~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p-~~~v~h~~~Ha~ 110 (323)
T PRK14878 39 EAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKP-LVPVNHCIAHIE 110 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCC-ccccchHHHHHH
Confidence 344566677888999999999999999999999988777777763 333444543 344555554443
No 248
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=21.70 E-value=83 Score=34.60 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.2
Q ss_pred CCcEEEEEcCCceEEEEEEeC
Q 047849 56 GNDIIGIDLGTTNSCVALMEG 76 (651)
Q Consensus 56 ~~~vvGID~GTt~s~va~~~~ 76 (651)
+.+|++||-|||.|.+.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 578999999999999888764
No 249
>PRK14143 heat shock protein GrpE; Provisional
Probab=21.65 E-value=8.2e+02 Score=24.49 Aligned_cols=66 Identities=11% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHHHHH
Q 047849 556 RNQADTTIYSIEKSLGEYREKIPSEVAKEIEDAVADLRKAMGAD-----NVDDIKSKLDAANKAVSKIGQH 621 (651)
Q Consensus 556 ~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~-----~~~~~~~k~~~l~~~~~~i~~~ 621 (651)
.-++|.|...+++..++...+....-...|...++.++..+..- +...+..-++.+.+.+..++.+
T Consensus 94 ~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~k 164 (238)
T PRK14143 94 AADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLKR 164 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555544444455556666777777777776531 1334444455554555555444
No 250
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=21.65 E-value=1.4e+02 Score=28.06 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.0
Q ss_pred cEEEEEcCCce-EEEEEEeCCceEEEeCCCC
Q 047849 58 DIIGIDLGTTN-SCVALMEGKNPKVIENSEG 87 (651)
Q Consensus 58 ~vvGID~GTt~-s~va~~~~~~~~ii~~~~g 87 (651)
.+.|||+|--. +++|++..+..+++..+..
T Consensus 2 my~GIDla~k~~tavavl~~~~~~~i~~~s~ 32 (178)
T COG2410 2 MYAGIDLAVKRSTAVAVLIEGRIEIISAWSS 32 (178)
T ss_pred cccccccccCCCceEEEEECCEEEEEEcccc
Confidence 47899998765 4888999999998876555
No 251
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.41 E-value=1.9e+02 Score=30.02 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCC
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKS 380 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~ 380 (651)
+++...++.+...++++|+++++++.+|+.+++-.++ +.+.+.+.+.+|.+
T Consensus 218 ~~~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~ 268 (325)
T PRK12879 218 EVFKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCC
Confidence 3444455667788999999999999999999998776 44556778887754
No 252
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=21.21 E-value=1.8e+02 Score=26.87 Aligned_cols=135 Identities=15% Similarity=0.182 Sum_probs=65.4
Q ss_pred eEEEEEeCCcceEEEEEEEeccccc--cc-CCCCc---cCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCCee
Q 047849 242 LIAVFDLGGGTFDVSILEISNGVFE--DE-GIDLS---KDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGAKH 315 (651)
Q Consensus 242 ~vlVvD~GggT~Dvsv~~~~~~~~~--~~-~~~~~---~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~~~ 315 (651)
+||=+|.|-..|=+++++..++.+. .. -+... .....+..+.+..++.-..... ..+.+|.+.-.
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~~rl~~I~~~l~~~i~~~~P---d~vaiE~~~~~------ 71 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSRLKTIYDGLNEVIDQFQP---DVVAIERVFFA------ 71 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHHHHHHHHHHHHHHHHHHhCC---CEEEEEEhhcc------
Confidence 3677888988888888887665433 11 11111 1122334444444444443322 23333332211
Q ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCCeEEEec-CccCcHhHHHHHHHHhcCCCC-CcCCcc
Q 047849 316 LNITLTRSKFETLVNNLIERTRAPCKNCLKDANIT-----TKDVDEVLLVG-GMTRVPKVQEVVSEIFGKSPS-KGVNPD 388 (651)
Q Consensus 316 ~~~~itr~~fe~l~~~~~~~i~~~i~~~l~~a~~~-----~~~i~~VvLvG-Gss~ip~i~~~l~~~f~~~~~-~~~~p~ 388 (651)
+ ..+..+ .+......+..++...++. +..+... ++| |.+.=.-++.++++.++.+.. .+.|..
T Consensus 72 ------~-n~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~-~tG~G~A~KeqV~~mv~~~l~~~~~~~~~d~a 141 (154)
T cd00529 72 ------K-NPDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKA-VTGYGKADKDQVQHMVKRLLNLSEIPKPDDAA 141 (154)
T ss_pred ------c-ChHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEE-EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH
Confidence 0 011111 1233444555555555543 4444443 345 444445688999999986543 333444
Q ss_pred chheehh
Q 047849 389 EAVALGA 395 (651)
Q Consensus 389 ~aVA~GA 395 (651)
.|.|.+.
T Consensus 142 DAlaiA~ 148 (154)
T cd00529 142 DALAVAI 148 (154)
T ss_pred HHHHHHH
Confidence 4444443
No 253
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=21.10 E-value=3.4e+02 Score=27.42 Aligned_cols=109 Identities=24% Similarity=0.297 Sum_probs=60.9
Q ss_pred EEeCCeeeChhhHHHHHHH--HHHHHHHHhhCCCCCeEEE--EecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhh
Q 047849 158 VEANGQQYSPSQIGAFVLT--KMKETAESYLGKSVSKAVI--TVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLS 233 (651)
Q Consensus 158 v~~~~~~~s~eev~a~~L~--~l~~~a~~~~~~~~~~~VI--TVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~ 233 (651)
+-.....++|. .+-...+ ++++..+ -+..+..++. .+|.+|+- -+++++++...|.+. -+++--.||.+.
T Consensus 83 vAvQDHG~~p~-~SnR~~RF~~~~~~L~--~g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlG 156 (254)
T PF08735_consen 83 VAVQDHGFSPG-QSNRIFRFELWREFLE--EGGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLG 156 (254)
T ss_pred EEecccCCCCC-CccHHHHHHHHHHHHh--cCCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhh
Confidence 44455556665 3333333 3333332 2445567777 88998763 345666666666666 344444444443
Q ss_pred hccccC---CCeEEEEEeCCcceEEEEEEEe--cccccccCCCC
Q 047849 234 YGMNNK---EGLIAVFDLGGGTFDVSILEIS--NGVFEDEGIDL 272 (651)
Q Consensus 234 y~~~~~---~~~vlVvD~GggT~Dvsv~~~~--~~~~~~~~~~~ 272 (651)
...+.. ...++++|+|-|.|-..+++-. -++|+.+-..+
T Consensus 157 al~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~GvfEHHT~~l 200 (254)
T PF08735_consen 157 ALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIYGVFEHHTGML 200 (254)
T ss_pred hhcChhhhccCCeEEEEeCCccEEEEEEeCCEEEEEEecccCCC
Confidence 333322 2389999999998888888421 24566444333
No 254
>PRK13326 pantothenate kinase; Reviewed
Probab=21.01 E-value=2.2e+02 Score=28.94 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 322 RSKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 322 r~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
++.-+.+-..++......|+..+++..-....--.|+++||.+.+ +...+. .....+|+. +-.|..+++.
T Consensus 185 ~nT~~aI~sGi~~g~~~~I~g~i~~~~~e~~~~~~vv~TGG~a~~------l~~~~~--~~~~~~~~L-vL~GL~~i~~ 254 (262)
T PRK13326 185 LSTSDSVNSGVIYQYKYLIEGVYHDLKRNYDREFNLIITGGNSNL------ILPLIS--VDFIFNLYL-TLEGIRILGN 254 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCHHH------HHhhCC--CCcEECccc-HHHHHHHHHh
Confidence 344455555555555555555544421111111279999998642 333222 122344543 6677766654
No 255
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=21.01 E-value=6.2e+02 Score=25.88 Aligned_cols=25 Identities=4% Similarity=0.056 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 047849 546 DNERKALIDIRNQADTTIYSIEKSL 570 (651)
Q Consensus 546 d~~~~~~~~~~n~le~~i~~~~~~l 570 (651)
.....++....-+|.+-++.|+.-+
T Consensus 81 ~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 81 ENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3334444444556666777776433
No 256
>PRK13324 pantothenate kinase; Reviewed
Probab=20.88 E-value=3.2e+02 Score=27.72 Aligned_cols=19 Identities=16% Similarity=0.629 Sum_probs=17.2
Q ss_pred EEEEEcCCceEEEEEEeCC
Q 047849 59 IIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 59 vvGID~GTt~s~va~~~~~ 77 (651)
++.||.|+|+++.++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 6899999999999999854
No 257
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=20.82 E-value=1.1e+02 Score=30.89 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=16.3
Q ss_pred EEEEcCCceEEEEEEeCCc
Q 047849 60 IGIDLGTTNSCVALMEGKN 78 (651)
Q Consensus 60 vGID~GTt~s~va~~~~~~ 78 (651)
||||-|.|.+.+.+++.++
T Consensus 1 lGIDgGgTkt~~vl~d~~g 19 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENG 19 (271)
T ss_dssp EEEEECSSEEEEEEEETTS
T ss_pred CEEeeChheeeeEEEeCCC
Confidence 7999999999998887543
No 258
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=20.82 E-value=2.1e+02 Score=30.19 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHH
Q 047849 326 ETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQE 371 (651)
Q Consensus 326 e~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~ 371 (651)
|...+...+.+..+++++|++++++..+||.|-.+=|-..++.+.-
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~V 89 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLV 89 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHH
Confidence 4566788999999999999999999999999999999999888874
No 259
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=20.82 E-value=1.1e+02 Score=27.98 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.6
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
.|++||.|+-|.+.++.+..
T Consensus 2 ii~sIDiGikNlA~~iie~~ 21 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIEFE 21 (143)
T ss_pred eEEEEecCCCceeEEEEEcC
Confidence 58999999999999998743
No 260
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=20.68 E-value=1.4e+02 Score=31.24 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHH
Q 047849 327 TLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQ 370 (651)
Q Consensus 327 ~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~ 370 (651)
...+...+.+...++++|+++++++.+||.|.++-|-...+.++
T Consensus 40 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 40 EAAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 34456777788889999999999999999999999877777766
No 261
>PRK10869 recombination and repair protein; Provisional
Probab=20.56 E-value=1.2e+03 Score=26.56 Aligned_cols=19 Identities=0% Similarity=0.165 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 047849 601 VDDIKSKLDAANKAVSKIG 619 (651)
Q Consensus 601 ~~~~~~k~~~l~~~~~~i~ 619 (651)
.++++++++.+++.+....
T Consensus 343 l~~Le~e~~~l~~~l~~~A 361 (553)
T PRK10869 343 LETLALAVEKHHQQALETA 361 (553)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 262
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=20.54 E-value=5.4e+02 Score=21.99 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=39.5
Q ss_pred CCCCCC-cceeeeeecccCcceEEEEEeecCccccccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCC--eeEEEEE
Q 047849 435 NTTIPT-KKSQVFSTAADNQTQVGIKVLQGEREMASDNKSLGEFELVGIPPAPRGMPQIEVTFDIDAN--GIVTVSA 508 (651)
Q Consensus 435 ~~~iP~-~~~~~~~~~~d~q~~~~i~i~~ge~~~~~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~--G~l~v~~ 508 (651)
++.=|. ..+..|....+....+.|.+|.-+.. .+..||++.+.- .....| ..+...|.+... |.|+++.
T Consensus 44 ~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~l-~~l~~g-~~~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 44 NSINPVWNETFEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFDV-SKLKLG-EKVRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred CCCCCccceEEEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEEH-HHCCCC-CcEEEEEECCCCCCceEEEEE
Confidence 344454 23344544333344688888875442 567899988752 222333 346777777653 7777654
No 263
>COG5418 Predicted secreted protein [Function unknown]
Probab=20.38 E-value=1.7e+02 Score=26.65 Aligned_cols=72 Identities=17% Similarity=0.332 Sum_probs=43.1
Q ss_pred HHHHhhhhcCCCce--eEEEecceeccCCCCeeEEEEecHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEec
Q 047849 285 AAEKAKIELSSTTQ--TDINLPFITADASGAKHLNITLTRSKFETL-VNNLIERTRAPCKNCLKDANITTKDVDEVLLVG 361 (651)
Q Consensus 285 ~~e~~K~~Ls~~~~--~~i~i~~~~~~~~g~~~~~~~itr~~fe~l-~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvG 361 (651)
.+..++..|.+++. .-+.+++-.-..-| --.-.+||++|+.. .+.+++++.+.|-+.|++-.- +.+ .++++|
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg--~~R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k~--d~~-kii~IG 104 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLG--WPRPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEKP--DGI-KIIFIG 104 (164)
T ss_pred HHHHHHHhhccCCCCCceEeccCchHHhhC--CCCCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhCc--CCc-eEEEEe
Confidence 56677777777743 23455442111000 01246889999865 477888888888888887432 112 677777
No 264
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=20.32 E-value=7.2e+02 Score=23.55 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=50.6
Q ss_pred ecCCeEEEEEeCCCCCCCcceeeeeecccCcceEEEEEeecCcccc-ccCcceeEEEEeCCCCCCCCCCeeEEEEEEcCC
Q 047849 423 TLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMA-SDNKSLGEFELVGIPPAPRGMPQIEVTFDIDAN 501 (651)
Q Consensus 423 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~~~i~i~~ge~~~~-~~n~~lg~~~l~~~~~~~~g~~~i~v~f~~d~~ 501 (651)
..++.|.+-+.-....|..-+. .+ +++ .+. .+|+++.- .+.-.+..- +.---..|+|..--.|+-.|+.+
T Consensus 69 ~~~~~F~V~lDV~~F~PeEl~V--k~--~~~-~l~---V~gkHeer~d~~G~v~R~-F~R~y~LP~~vdp~~V~S~LS~d 139 (173)
T KOG3591|consen 69 NDKDKFEVNLDVHQFKPEELKV--KT--DDN-TLE---VEGKHEEKEDEHGYVSRS-FVRKYLLPEDVDPTSVTSTLSSD 139 (173)
T ss_pred cCCCcEEEEEEcccCcccceEE--Ee--CCC-EEE---EEeeeccccCCCCeEEEE-EEEEecCCCCCChhheEEeeCCC
Confidence 3456677777777777755332 11 111 233 34554332 222222211 11111245666556899999999
Q ss_pred eeEEEEEEecCCCc--eeeEEecCC
Q 047849 502 GIVTVSAKDKATGK--EQQITIRSS 524 (651)
Q Consensus 502 G~l~v~~~~~~t~~--~~~~~i~~~ 524 (651)
|+|+|+|....... +..+.|...
T Consensus 140 GvLtI~ap~~~~~~~~er~ipI~~~ 164 (173)
T KOG3591|consen 140 GVLTIEAPKPPPKQDNERSIPIEQV 164 (173)
T ss_pred ceEEEEccCCCCcCccceEEeEeec
Confidence 99999997665443 566666543
No 265
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=20.18 E-value=80 Score=37.74 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.7
Q ss_pred cEEEEEcCCceEEEEEEeCC
Q 047849 58 DIIGIDLGTTNSCVALMEGK 77 (651)
Q Consensus 58 ~vvGID~GTt~s~va~~~~~ 77 (651)
++||+|+||+.++.|+++..
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 58999999999999999744
No 266
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=20.11 E-value=7.2e+02 Score=25.22 Aligned_cols=201 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhhCC------CCCeEEEEecCCCCHHHHHHHHHHHHHcCCceEEeecchHHHhhhhccccCC
Q 047849 167 PSQIGAFVLTKMKETAESYLGK------SVSKAVITVPAYFNDAQRQATKDAGRIAGLDVQRIINEPTAASLSYGMNNKE 240 (651)
Q Consensus 167 ~eev~a~~L~~l~~~a~~~~~~------~~~~~VITVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~ 240 (651)
|+.....-.+.|....++.+.. .++.+++|+=......-|-.+--|--+|-.-.+-++.=++-.++++.....+
T Consensus 22 P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~~~Pli~v~~l~a~a~~~~~~~ 101 (268)
T PF00814_consen 22 PEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALALNIPLIGVSHLEAHALSARLSE 101 (268)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHhCCCeEeeccHHHHHHhHhhhc
Q ss_pred Ce----EEEEEeCCcceEEE---EEEEecccccccCCCCccCHHHHHHHHHHHHHhhhhcCCCceeEEEecceeccCCCC
Q 047849 241 GL----IAVFDLGGGTFDVS---ILEISNGVFEDEGIDLSKDRLALQRLREAAEKAKIELSSTTQTDINLPFITADASGA 313 (651)
Q Consensus 241 ~~----vlVvD~GggT~Dvs---v~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~g~ 313 (651)
+. ++++|-|.+.+=.. .++..++..+...-+.-.....+..+.......-+.|.... ..+.++....+
T Consensus 102 ~~~~P~~~~isa~~~~vy~~~~~~~~~~~~t~d~~~ge~~dk~~~~l~l~~~~g~~le~la~~~-~~~~~p~~~~~---- 176 (268)
T PF00814_consen 102 GLKFPLVLLISAGHTEVYLAEGGDYEILGETLDDAIGEAFDKVARLLGLPYPGGPALEKLASEG-EAFKFPRPLKN---- 176 (268)
T ss_dssp TEESEEEEEEECSTCEEEEEETTEEEEECCBSSSCHHHHHHHHHHHTT--SSHHHHHHHHHCT--S------SEET----
T ss_pred cccCceEEEEECCCccEEEEEeeEEEeeccccccccHHHHhhHHHHhccccccCcHHHHHHHhC-Ccceeccceee----
Q ss_pred eeEEEEecHHHHHH----------HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHh
Q 047849 314 KHLNITLTRSKFET----------LVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIF 377 (651)
Q Consensus 314 ~~~~~~itr~~fe~----------l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f 377 (651)
.++.+.=....... +-+-+++.+...+..+++. ..+..++++||-+...+||+.+++..
T Consensus 177 ~~~sFsG~~t~~~~~i~~~~iA~s~q~~~~~~l~~~~~~a~~~-----~~~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 177 CDFSFSGLKTAVYRLIEKADIAASFQEAIADHLAKKAPRALEK-----PRAKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp TEEEEHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCSEEEEESGGGGHHHHHHHHHHHH
T ss_pred eeEEEEcccHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-----hcccccchHHHHHHHHHHHHHHHHHH
No 267
>PRK13324 pantothenate kinase; Reviewed
Probab=20.04 E-value=1e+02 Score=31.34 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEecCccCcHhHHHHHHHHhcCCCCCcCCccchheehhHHHhh
Q 047849 323 SKFETLVNNLIERTRAPCKNCLKDANITTKDVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVALGAAIQGG 400 (651)
Q Consensus 323 ~~fe~l~~~~~~~i~~~i~~~l~~a~~~~~~i~~VvLvGGss~ip~i~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~ 400 (651)
+.-+.+-..++-.....|+..+++..-....--.|+++||.+.+ +.. . ......+|+ -+-.|..+.+.
T Consensus 184 nT~~ai~sG~~~g~~~~i~~~~~~~~~~~~~~~~vi~TGG~a~~--~~~-----~--~~~~~~~~~-LvL~GL~~i~~ 251 (258)
T PRK13324 184 DTKTNIRSGLYYGHLGALKELKRRSVEEFGSPVYTIATGGFAGL--FKE-----E--DIFNEISPD-LILRGIRIAFL 251 (258)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCChHH--hcc-----c--CCcceECcC-hHHHHHHHHHH
Confidence 33444445555555555555544421111111269999998732 211 1 122233444 36677766654
Done!