BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047850
         (236 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 33.9 bits (76), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLLQSN 174
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R++  LQ +
Sbjct: 13  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTLQQD 64


>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
 pdb|1HLO|B Chain B, The Crystal Structure Of An Intact Human Max-Dna Complex:
           New Insights Into Mechanisms Of Transcriptional Control
          Length = 80

 Score = 30.4 bits (67), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQ 167
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R+
Sbjct: 21  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65


>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna
 pdb|1NKP|E Chain E, Crystal Structure Of Myc-Max Recognizing Dna
          Length = 83

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQ 167
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R+
Sbjct: 11  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55


>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna
 pdb|1NLW|E Chain E, Crystal Structure Of Mad-Max Recognizing Dna
          Length = 76

 Score = 30.0 bits (66), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQ 167
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R+
Sbjct: 10  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 54


>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric
           BHLHZ DOMAIN
          Length = 86

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 125 RHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQ 167
           R RR+ I +    L+  VP   G K   A +LD+A  Y+++++R+
Sbjct: 12  RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,687,024
Number of Sequences: 62578
Number of extensions: 121784
Number of successful extensions: 323
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 7
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)