Query 047850
Match_columns 236
No_of_seqs 259 out of 1019
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:47:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.5 6.2E-14 1.3E-18 97.9 5.4 52 118-169 6-60 (60)
2 smart00353 HLH helix loop heli 99.4 2.3E-13 5E-18 93.4 6.3 49 121-169 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.4 1.6E-13 3.5E-18 95.5 5.5 48 118-165 3-55 (55)
4 KOG1318 Helix loop helix trans 99.3 1.5E-12 3.1E-17 123.7 6.5 54 117-170 234-291 (411)
5 KOG1319 bHLHZip transcription 99.0 5.5E-10 1.2E-14 96.6 5.2 60 118-177 64-130 (229)
6 KOG4304 Transcriptional repres 98.8 4.3E-09 9.3E-14 94.8 3.7 54 119-172 35-96 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.6 7.8E-08 1.7E-12 98.1 5.6 50 118-167 22-75 (803)
8 KOG2483 Upstream transcription 98.4 9.3E-07 2E-11 79.0 7.5 59 114-172 57-118 (232)
9 KOG2588 Predicted DNA-binding 98.4 1.3E-07 2.9E-12 97.1 2.0 63 115-177 275-338 (953)
10 KOG0561 bHLH transcription fac 98.0 6E-06 1.3E-10 76.2 3.8 53 119-171 63-117 (373)
11 KOG3960 Myogenic helix-loop-he 97.9 2.7E-05 5.8E-10 70.3 6.9 58 118-175 120-179 (284)
12 PLN03217 transcription factor 97.6 0.00015 3.3E-09 55.7 5.4 50 128-177 19-74 (93)
13 KOG4029 Transcription factor H 97.6 7E-05 1.5E-09 66.1 4.0 58 118-175 111-172 (228)
14 KOG3910 Helix loop helix trans 97.4 0.00052 1.1E-08 67.2 8.2 55 118-172 528-586 (632)
15 KOG4447 Transcription factor T 96.6 0.0036 7.9E-08 53.0 5.1 50 120-169 82-133 (173)
16 KOG3560 Aryl-hydrocarbon recep 94.2 0.035 7.7E-07 55.4 3.0 39 125-163 34-76 (712)
17 KOG3558 Hypoxia-inducible fact 92.6 0.08 1.7E-06 54.1 2.6 43 121-163 51-97 (768)
18 KOG3898 Transcription factor N 91.9 0.47 1E-05 43.1 6.5 50 119-168 75-127 (254)
19 KOG4395 Transcription factor A 88.6 0.68 1.5E-05 42.4 4.5 53 118-170 176-231 (285)
20 KOG3559 Transcriptional regula 88.3 0.58 1.3E-05 45.7 4.1 43 122-164 7-53 (598)
21 KOG4447 Transcription factor T 69.3 3.3 7.3E-05 35.4 2.0 44 123-166 29-74 (173)
22 KOG3582 Mlx interactors and re 61.4 1.7 3.7E-05 44.8 -1.3 58 118-175 653-715 (856)
23 COG3416 Uncharacterized protei 49.4 84 0.0018 28.4 7.3 20 156-175 59-78 (233)
24 PRK13702 replication protein; 42.1 1E+02 0.0022 23.8 5.9 42 118-159 22-76 (85)
25 PF02344 Myc-LZ: Myc leucine z 40.5 32 0.00068 21.9 2.4 16 125-140 14-29 (32)
26 COG3074 Uncharacterized protei 36.7 44 0.00095 25.2 3.0 24 154-177 13-36 (79)
27 TIGR00986 3a0801s05tom22 mitoc 34.9 21 0.00046 30.1 1.3 18 129-146 49-66 (145)
28 PRK15422 septal ring assembly 32.4 55 0.0012 25.0 3.0 24 154-177 13-36 (79)
29 KOG3584 cAMP response element 31.8 25 0.00055 33.1 1.4 22 158-179 311-332 (348)
30 PF04281 Tom22: Mitochondrial 28.1 40 0.00086 28.1 1.8 16 130-145 52-67 (137)
31 PF06005 DUF904: Protein of un 26.3 79 0.0017 23.4 3.0 22 154-175 13-34 (72)
32 PRK11020 hypothetical protein; 23.1 99 0.0021 25.2 3.2 48 127-174 6-53 (118)
33 KOG1924 RhoA GTPase effector D 22.2 1.8E+02 0.0039 31.3 5.6 24 153-176 496-519 (1102)
34 PF09849 DUF2076: Uncharacteri 21.2 2.4E+02 0.0052 25.7 5.7 15 161-175 57-71 (247)
35 KOG3582 Mlx interactors and re 20.9 28 0.00061 36.4 -0.5 54 118-174 789-847 (856)
36 PF10465 Inhibitor_I24: PinA p 20.7 80 0.0017 26.2 2.2 19 150-168 121-139 (140)
37 PF05308 Mito_fiss_reg: Mitoch 20.7 2.4E+02 0.0052 25.7 5.6 27 151-177 114-140 (253)
38 COG1076 DjlA DnaJ-domain-conta 20.3 66 0.0014 27.2 1.7 57 118-175 114-170 (174)
39 PF10046 BLOC1_2: Biogenesis o 20.2 50 0.0011 25.5 0.9 42 129-170 52-98 (99)
40 PF12180 EABR: TSG101 and ALIX 20.1 1.1E+02 0.0023 20.0 2.2 13 159-171 23-35 (35)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.47 E-value=6.2e-14 Score=97.95 Aligned_cols=52 Identities=29% Similarity=0.562 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhHHHHHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG---TKMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~---~K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
..|+..||+||++||+.|..|+.+||.+ .|+||++||+.||+||+.|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5699999999999999999999999987 899999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.44 E-value=2.3e-13 Score=93.40 Aligned_cols=49 Identities=35% Similarity=0.582 Sum_probs=45.8
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850 121 SVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 121 s~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
+..||+||++||++|..|+.+||. +.|+||++||++||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999994 6799999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.44 E-value=1.6e-13 Score=95.47 Aligned_cols=48 Identities=33% Similarity=0.578 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFLK 165 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-----~K~dkasIL~~AI~YIk~Lq 165 (236)
..|+..||+||++||+.|..|+.+||.+ .|++|++||+.||+||++||
T Consensus 3 ~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 3 QKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999976 78999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.34 E-value=1.5e-12 Score=123.69 Aligned_cols=54 Identities=26% Similarity=0.521 Sum_probs=49.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHHHHHH
Q 047850 117 DDPQSVAARHRREKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKRQIRL 170 (236)
Q Consensus 117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~~v~~ 170 (236)
++.|+.+|||||++||++|++|..|||.| .|..|.+||..++|||+.||+..++
T Consensus 234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998 4567999999999999999988774
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.98 E-value=5.5e-10 Score=96.55 Aligned_cols=60 Identities=28% Similarity=0.503 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC-------CCCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG-------GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~-------~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
.+|..+||+||+.||..+..|+.|||. |.|+.||.||.++||||.+|+.++.+.+.+...
T Consensus 64 ~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~ 130 (229)
T KOG1319|consen 64 RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST 130 (229)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999995 457889999999999999999998887766654
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.77 E-value=4.3e-09 Score=94.77 Aligned_cols=54 Identities=20% Similarity=0.419 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC--------CCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047850 119 PQSVAARHRREKISEKIRILQRLVPG--------GTKMDTASMLDEAIRYVKFLKRQIRLLQ 172 (236)
Q Consensus 119 ~hs~~ER~RR~kin~~~~~Lr~LVP~--------~~K~dkasIL~~AI~YIk~Lq~~v~~L~ 172 (236)
.+-++|||||+|||+.|..|++||+. -.|++||.||+.||+|+|.|+.....--
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~~ 96 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAAA 96 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccccc
Confidence 35699999999999999999999993 2788999999999999999998765543
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.55 E-value=7.8e-08 Score=98.12 Aligned_cols=50 Identities=26% Similarity=0.462 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKRQ 167 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~~ 167 (236)
++|+.+|||||+++|..|.+|.+|||.| .|+||.+||.+||++||.++..
T Consensus 22 e~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 22 ENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999999999999986 5999999999999999998875
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.38 E-value=9.3e-07 Score=78.99 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=49.2
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhccCCCC--CC-CChhHHHHHHHHHHHHHHHHHHHHh
Q 047850 114 RISDDPQSVAARHRREKISEKIRILQRLVPGG--TK-MDTASMLDEAIRYVKFLKRQIRLLQ 172 (236)
Q Consensus 114 r~~~~~hs~~ER~RR~kin~~~~~Lr~LVP~~--~K-~dkasIL~~AI~YIk~Lq~~v~~L~ 172 (236)
..++..|+..||+||..|+++|..|+.+||.+ .+ -+.++||+.|++||+.|+.+....+
T Consensus 57 ~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~ 118 (232)
T KOG2483|consen 57 ASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQ 118 (232)
T ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHH
Confidence 34567799999999999999999999999963 33 3379999999999999987765543
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.37 E-value=1.3e-07 Score=97.06 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=57.7
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850 115 ISDDPQSVAARHRREKISEKIRILQRLVPG-GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 115 ~~~~~hs~~ER~RR~kin~~~~~Lr~LVP~-~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
.++.+||++|||.|..|||+|.+|+++||+ ..|+.|..+|..||+||++|+...+.++.++..
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 357899999999999999999999999998 589999999999999999999999988766654
No 10
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.97 E-value=6e-06 Score=76.22 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHHHH
Q 047850 119 PQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLL 171 (236)
Q Consensus 119 ~hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~~L 171 (236)
--+..||||=.-||..|..||.|+|. +.|++||.||+.+.+||.+|+.+.-+|
T Consensus 63 IANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 63 IANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred hhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 35577999999999999999999996 899999999999999999998765554
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.91 E-value=2.7e-05 Score=70.32 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=50.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhc-cCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 118 DPQSVAARHRREKISEKIRILQR-LVPG-GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~-LVP~-~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
.+-.+-||||=.|+|+.|.+|++ -+++ -.++-|+.||..||+||..||.-++++....
T Consensus 120 KAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 120 KAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34668899999999999999987 4554 5789999999999999999999999986554
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.58 E-value=0.00015 Score=55.75 Aligned_cols=50 Identities=26% Similarity=0.483 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhccCCC------CCCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850 128 REKISEKIRILQRLVPG------GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 128 R~kin~~~~~Lr~LVP~------~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
-+.|++.+..|+.|+|. ..|...+-||++|..||+.|+.+|..|.+....
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~ 74 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE 74 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999994 467788899999999999999999999877654
No 13
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.57 E-value=7e-05 Score=66.13 Aligned_cols=58 Identities=17% Similarity=0.375 Sum_probs=51.4
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
..++..||.|=..+|..|..||.+||. ..|+.|..+|..||.||++|+.-++.-+...
T Consensus 111 ~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 111 QARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 456777999999999999999999994 5789999999999999999999888877554
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.42 E-value=0.00052 Score=67.20 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=46.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC---C-CCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG---G-TKMDTASMLDEAIRYVKFLKRQIRLLQ 172 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~-~K~dkasIL~~AI~YIk~Lq~~v~~L~ 172 (236)
.+.++-||-|=..||+.|++|.++.-- . ..-.|.-||..||.-|-.|++||++-.
T Consensus 528 ~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 528 MANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 567888999999999999999998753 2 224599999999999999999999754
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.61 E-value=0.0036 Score=53.03 Aligned_cols=50 Identities=26% Similarity=0.542 Sum_probs=45.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850 120 QSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 120 hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
|++-||+|-..+|+.|.+||.++|. ..|++|.--|.-|..||-+|=+-.+
T Consensus 82 anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 82 ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 8899999999999999999999996 7999999999999999999865443
No 16
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=94.23 E-value=0.035 Score=55.35 Aligned_cols=39 Identities=23% Similarity=0.502 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHH
Q 047850 125 RHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKF 163 (236)
Q Consensus 125 R~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~ 163 (236)
||-|+|+|..+..|.+|+|- ..|+||.+||.-+|-|++.
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 56699999999999999994 6999999999999999863
No 17
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.61 E-value=0.08 Score=54.07 Aligned_cols=43 Identities=35% Similarity=0.540 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHH
Q 047850 121 SVAARHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKF 163 (236)
Q Consensus 121 s~~ER~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~ 163 (236)
.-+.|.||.|-|+.|.+|..++|- ...+|||+|+.-||-|+|-
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 356799999999999999999993 4779999999999999974
No 18
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=91.93 E-value=0.47 Score=43.07 Aligned_cols=50 Identities=18% Similarity=0.357 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHH
Q 047850 119 PQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQI 168 (236)
Q Consensus 119 ~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v 168 (236)
.-+.-||+|=-.+|+-|..||.++|. ..|+.|...|.-|-.||..|+.-.
T Consensus 75 kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 75 KANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred cccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 35567888889999999999999993 689999999999999999998543
No 19
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=88.62 E-value=0.68 Score=42.42 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=45.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRL 170 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~ 170 (236)
.+-+..||+|=..+|..|..||.+||. ..|+.|-.-|+.|-.||-.|-..+..
T Consensus 176 ~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~~ 231 (285)
T KOG4395|consen 176 LAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLDL 231 (285)
T ss_pred cccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhcC
Confidence 345678999999999999999999996 47899999999999999998877644
No 20
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=88.28 E-value=0.58 Score=45.66 Aligned_cols=43 Identities=35% Similarity=0.468 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHHH
Q 047850 122 VAARHRREKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKFL 164 (236)
Q Consensus 122 ~~ER~RR~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~L 164 (236)
-+.|.||++-|-.|.+|..|+|- ...+||++|+.-|..|||.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 45699999999999999999994 35699999999999999853
No 21
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=69.28 E-value=3.3 Score=35.39 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHH
Q 047850 123 AARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKR 166 (236)
Q Consensus 123 ~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~ 166 (236)
.|+.|..++++.+.-|+.|+|+ ..++.+---|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 4788889999999999999997 3444433335555566655543
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=61.43 E-value=1.7 Score=44.83 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC-----CCCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG-----GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~-----~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
-.|+-+|.+||++|+-+|..|-+++-. ..|+.++.-+..+++||..++.+...+.++.
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 559999999999999999999999975 3567788889999999998888776665443
No 23
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.44 E-value=84 Score=28.35 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 047850 156 EAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 156 ~AI~YIk~Lq~~v~~L~~~~ 175 (236)
.+--.||+||.+|+.|+.+.
T Consensus 59 ~a~~~i~eLe~ri~~lq~~~ 78 (233)
T COG3416 59 KASTQIKELEKRIAILQAGE 78 (233)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 33457999999999999874
No 24
>PRK13702 replication protein; Provisional
Probab=42.10 E-value=1e+02 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=30.6
Q ss_pred CcccHHHHHHH--HHHHHHHHHHhccCCC-----------CCCCChhHHHHHHHH
Q 047850 118 DPQSVAARHRR--EKISEKIRILQRLVPG-----------GTKMDTASMLDEAIR 159 (236)
Q Consensus 118 ~~hs~~ER~RR--~kin~~~~~Lr~LVP~-----------~~K~dkasIL~~AI~ 159 (236)
.+.+.+||.|. -|..+.-++|.-+|+. ...+..|.+|+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 78999999884 4555666778777774 245678888887775
No 25
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=40.47 E-value=32 Score=21.94 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 047850 125 RHRREKISEKIRILQR 140 (236)
Q Consensus 125 R~RR~kin~~~~~Lr~ 140 (236)
|+||+.++.++..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6889999999999985
No 26
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.66 E-value=44 Score=25.15 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 047850 154 LDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 154 L~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
+..|||-|.-||.+|.+|++.+..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~ 36 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 567999999999999999877653
No 27
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=34.89 E-value=21 Score=30.11 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhccCCCCC
Q 047850 129 EKISEKIRILQRLVPGGT 146 (236)
Q Consensus 129 ~kin~~~~~Lr~LVP~~~ 146 (236)
+-|-+||.+|+++||...
T Consensus 49 ETl~ERi~ALkDm~Pp~~ 66 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTT 66 (145)
T ss_pred CcHHHHHHHHHhhCCHHH
Confidence 456778999999999543
No 28
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.35 E-value=55 Score=24.98 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 047850 154 LDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 154 L~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
++.|||-|.-||.+|.+|++.+..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~ 36 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999877654
No 29
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=31.83 E-value=25 Score=33.06 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhccccCC
Q 047850 158 IRYVKFLKRQIRLLQSNQCNIV 179 (236)
Q Consensus 158 I~YIk~Lq~~v~~L~~~~~~~~ 179 (236)
-+|||.|+.+|.-||.++..+.
T Consensus 311 KEYVKCLENRVAVLENQNKaLI 332 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNKALI 332 (348)
T ss_pred hHHHHHHHhHHHHHhcccHHHH
Confidence 3899999999999998876543
No 30
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=28.08 E-value=40 Score=28.13 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=12.4
Q ss_pred HHHHHHHHHhccCCCC
Q 047850 130 KISEKIRILQRLVPGG 145 (236)
Q Consensus 130 kin~~~~~Lr~LVP~~ 145 (236)
-|-+||-+|+++||..
T Consensus 52 Tl~ERl~aLkdi~P~~ 67 (137)
T PF04281_consen 52 TLLERLWALKDIFPPS 67 (137)
T ss_pred cHHHHHHHHhccCCHH
Confidence 4566899999999943
No 31
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=26.31 E-value=79 Score=23.41 Aligned_cols=22 Identities=14% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 047850 154 LDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 154 L~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
+..||+-|.-|+.+|.+|+.++
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999998764
No 32
>PRK11020 hypothetical protein; Provisional
Probab=23.07 E-value=99 Score=25.25 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 047850 127 RREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSN 174 (236)
Q Consensus 127 RR~kin~~~~~Lr~LVP~~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~ 174 (236)
-=.++|+++..++.=.+....-..+.|+.+-.+-|..|..+|..|+..
T Consensus 6 Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 53 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEV 53 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999887776655666677777777778888888877644
No 33
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.15 E-value=1.8e+02 Score=31.26 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Q 047850 153 MLDEAIRYVKFLKRQIRLLQSNQC 176 (236)
Q Consensus 153 IL~~AI~YIk~Lq~~v~~L~~~~~ 176 (236)
=|.+-++-|+.|+...+.|.++..
T Consensus 496 el~k~e~Ki~~l~ae~~al~s~~~ 519 (1102)
T KOG1924|consen 496 ELQKHEEKIKLLEAEKQALSSPSQ 519 (1102)
T ss_pred HHHHhhhhcccCchhhhhccCccc
Confidence 344444445555555555544443
No 34
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=21.24 E-value=2.4e+02 Score=25.67 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhcc
Q 047850 161 VKFLKRQIRLLQSNQ 175 (236)
Q Consensus 161 Ik~Lq~~v~~L~~~~ 175 (236)
||.|+.||++||.+.
T Consensus 57 L~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 57 LKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 577888888888774
No 35
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=20.93 E-value=28 Score=36.38 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-----CCCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFLKRQIRLLQSN 174 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-----~K~dkasIL~~AI~YIk~Lq~~v~~L~~~ 174 (236)
..|.-.+||||-.+.++|..|-.|.|.. .++.+++||. |.+|.+++.-+.+.+.
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~ 847 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEK 847 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhh
Confidence 3477789999999999999999999953 5678999998 8899999888887653
No 36
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=20.74 E-value=80 Score=26.18 Aligned_cols=19 Identities=21% Similarity=0.632 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 047850 150 TASMLDEAIRYVKFLKRQI 168 (236)
Q Consensus 150 kasIL~~AI~YIk~Lq~~v 168 (236)
-..+.+.|.+||..|+.|+
T Consensus 121 EgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 121 EGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred hhhHHHHHHHHHHHHHhhc
Confidence 6778999999999999886
No 37
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.66 E-value=2.4e+02 Score=25.72 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850 151 ASMLDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 151 asIL~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
...=++||.-|-.||.++..|.++.+.
T Consensus 114 ~~~~~~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 114 LPANEAALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999988764
No 38
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.28 E-value=66 Score=27.15 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=46.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
+.....+...+..+....++++.++-.-. .|+++.+..=.+|++.|+.++++++...
T Consensus 114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~-~d~a~~~~~~~e~~~~~~~~~~~i~~a~ 170 (174)
T COG1076 114 DALKVLGVEIKADQDAIKKAYRKLLSEQH-PDKAAAKGLKLEFIEKLKEKLQEIQEAY 170 (174)
T ss_pred hHHHHhcCchhhhHHHHHHHHHHHHHhcC-HHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 44556667778888888888888886555 8999999999999999999999998654
No 39
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.17 E-value=50 Score=25.49 Aligned_cols=42 Identities=19% Similarity=0.338 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhccCCCCCCCC-hhHHHHHHHH----HHHHHHHHHHH
Q 047850 129 EKISEKIRILQRLVPGGTKMD-TASMLDEAIR----YVKFLKRQIRL 170 (236)
Q Consensus 129 ~kin~~~~~Lr~LVP~~~K~d-kasIL~~AI~----YIk~Lq~~v~~ 170 (236)
+.+|.+...|+..+=....++ +.+-|+.++. |.+.|+.+++.
T Consensus 52 ~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 52 EDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555554432222222 4455555554 56666666554
No 40
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=20.06 E-value=1.1e+02 Score=19.97 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHH
Q 047850 159 RYVKFLKRQIRLL 171 (236)
Q Consensus 159 ~YIk~Lq~~v~~L 171 (236)
+||+.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 6888888888765
Done!