Query 047850
Match_columns 236
No_of_seqs 259 out of 1019
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 06:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 3.2E-17 1.1E-21 123.0 6.5 60 118-177 8-68 (82)
2 4ati_A MITF, microphthalmia-as 99.7 1.4E-16 4.9E-21 127.1 7.2 59 117-175 28-90 (118)
3 4h10_B Circadian locomoter out 99.6 2.5E-16 8.5E-21 115.6 5.7 55 118-172 10-65 (71)
4 1an4_A Protein (upstream stimu 99.6 1.9E-16 6.3E-21 113.5 2.4 53 117-169 6-64 (65)
5 1a0a_A BHLH, protein (phosphat 99.6 1.1E-16 3.8E-21 114.8 0.8 53 117-169 3-62 (63)
6 1hlo_A Protein (transcription 99.6 2.3E-15 8E-20 112.0 5.5 60 118-177 14-75 (80)
7 1nkp_B MAX protein, MYC proto- 99.6 3.9E-15 1.3E-19 111.3 6.4 59 118-176 4-64 (83)
8 4h10_A ARYL hydrocarbon recept 99.6 8E-16 2.7E-20 113.4 2.0 49 118-166 11-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 8.5E-15 2.9E-19 111.2 6.4 58 118-175 8-68 (88)
10 3u5v_A Protein MAX, transcript 99.5 1.6E-14 5.6E-19 107.1 4.6 57 118-174 7-67 (76)
11 1nlw_A MAD protein, MAX dimeri 99.5 6.2E-14 2.1E-18 104.8 6.0 59 118-176 3-64 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.3 1.4E-12 4.6E-17 94.9 2.8 52 118-169 14-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.2 4.8E-11 1.6E-15 84.7 5.9 52 118-169 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.1 6.5E-11 2.2E-15 107.8 6.0 51 118-168 14-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 1.4E-10 4.7E-15 107.0 3.2 52 117-168 14-69 (387)
16 4ath_A MITF, microphthalmia-as 98.9 2.9E-09 9.9E-14 80.1 5.9 48 128-175 4-55 (83)
17 2lfh_A DNA-binding protein inh 98.8 1.5E-09 5.3E-14 78.7 1.9 45 122-166 20-67 (68)
18 4aya_A DNA-binding protein inh 98.3 1E-06 3.6E-11 67.9 6.6 50 124-173 33-85 (97)
19 3muj_A Transcription factor CO 59.3 12 0.0004 30.2 4.6 36 129-164 94-133 (138)
20 2wt7_A Proto-oncogene protein 54.1 21 0.00073 24.4 4.7 17 124-140 1-17 (63)
21 1xkm_B Distinctin chain B; por 36.9 42 0.0014 19.2 3.2 19 151-169 3-21 (26)
22 2jee_A YIIU; FTSZ, septum, coi 31.7 35 0.0012 25.1 3.0 24 154-177 15-38 (81)
23 1pd7_B MAD1; PAH2, SIN3, eukar 31.6 57 0.0019 19.0 3.2 20 147-166 1-20 (26)
24 1pyi_A Protein (pyrimidine pat 29.5 55 0.0019 23.2 3.8 21 158-178 47-67 (96)
25 2er8_A Regulatory protein Leu3 28.5 30 0.001 23.3 2.1 20 158-177 48-67 (72)
26 1dh3_A Transcription factor CR 28.0 32 0.0011 23.0 2.1 19 159-177 22-40 (55)
27 1hwt_C Protein (heme activator 28.0 37 0.0013 23.3 2.5 21 158-178 57-77 (81)
28 1m2x_A Class B carbapenemase B 27.5 28 0.00097 27.9 2.1 31 139-170 190-221 (223)
29 2jqq_A Conserved oligomeric go 26.9 33 0.0011 29.2 2.4 46 128-174 53-98 (204)
30 3fx7_A Putative uncharacterize 26.6 1.4E+02 0.0046 22.4 5.5 23 153-175 64-86 (94)
31 3he4_B Synzip5; heterodimeric 24.6 78 0.0027 20.3 3.3 21 154-174 5-25 (46)
32 2l5g_A GPS2 protein, G protein 24.4 87 0.003 19.8 3.4 28 148-175 4-31 (38)
33 1g70_B RSG-1.2 peptide; peptid 24.1 43 0.0015 19.1 1.8 11 120-130 9-19 (26)
34 1gd2_E Transcription factor PA 23.6 48 0.0016 23.5 2.4 17 158-174 28-44 (70)
35 1zme_C Proline utilization tra 21.5 49 0.0017 21.9 2.1 16 159-174 44-59 (70)
36 3coq_A Regulatory protein GAL4 20.8 39 0.0013 23.5 1.5 25 158-182 44-68 (89)
37 1a7t_A Metallo-beta-lactamase; 20.7 63 0.0021 26.0 3.0 30 139-169 200-230 (232)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.68 E-value=3.2e-17 Score=122.99 Aligned_cols=60 Identities=27% Similarity=0.490 Sum_probs=56.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG-TKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
..|+.+||+||++||++|.+|++|||++ .|+||++||++||+||++|+.+++.|+.+...
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~ 68 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999997 89999999999999999999999999987654
No 2
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.65 E-value=1.4e-16 Score=127.06 Aligned_cols=59 Identities=22% Similarity=0.490 Sum_probs=52.1
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCCC----CCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 117 DDPQSVAARHRREKISEKIRILQRLVPGGT----KMDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~~----K~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
+..|+++||+||++||++|.+|++|||+|. |++|++||++||+||++||.+++.|+...
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999864 68899999999999999999999998653
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.63 E-value=2.5e-16 Score=115.63 Aligned_cols=55 Identities=24% Similarity=0.469 Sum_probs=51.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHh
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG-TKMDTASMLDEAIRYVKFLKRQIRLLQ 172 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~-~K~dkasIL~~AI~YIk~Lq~~v~~L~ 172 (236)
.+|+.+||+||++||++|.+|++|||++ .|+||++||++||+||++||.++.=|+
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 6799999999999999999999999974 699999999999999999999987765
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=1.9e-16 Score=113.48 Aligned_cols=53 Identities=23% Similarity=0.426 Sum_probs=48.8
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCCC------CCChhHHHHHHHHHHHHHHHHHH
Q 047850 117 DDPQSVAARHRREKISEKIRILQRLVPGGT------KMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~~------K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
+..|+.+||+||++||+.|..|++|||.+. |+||++||++||+||++|+.+++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 377999999999999999999999999865 78999999999999999998753
No 5
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=1.1e-16 Score=114.79 Aligned_cols=53 Identities=21% Similarity=0.424 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCC-------CCCChhHHHHHHHHHHHHHHHHHH
Q 047850 117 DDPQSVAARHRREKISEKIRILQRLVPGG-------TKMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP~~-------~K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
+..|+.+||+||++||..|..|+.|||.+ .|++||+||+.||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999999999953 577899999999999999998763
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.56 E-value=2.3e-15 Score=111.99 Aligned_cols=60 Identities=25% Similarity=0.447 Sum_probs=55.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC--CCCChhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG--TKMDTASMLDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~--~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
..|+..||+||.+||+.|..|+++||.+ .|++|++||..||+||+.|+.+++.|+.+...
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999975 79999999999999999999999999887543
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.56 E-value=3.9e-15 Score=111.31 Aligned_cols=59 Identities=27% Similarity=0.504 Sum_probs=54.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQC 176 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~ 176 (236)
..|+..||+||++||+.|..|+++||. +.|++|++||..||+||++|+.+++.|+.+..
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~ 64 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999997 48999999999999999999999999887654
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=8e-16 Score=113.44 Aligned_cols=49 Identities=31% Similarity=0.455 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKR 166 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~ 166 (236)
..|+.+||+||++||+.|.+|+.|||.| .|+|||+||+.||+|||.|+.
T Consensus 11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 7799999999999999999999999976 799999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.53 E-value=8.5e-15 Score=111.25 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=53.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCC---CCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPGG---TKMDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~~---~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
..|+..||+||++||++|..|+++||.+ .|++|++||.+||+||++|+.+++.|..+.
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~ 68 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999974 699999999999999999999998876543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.49 E-value=1.6e-14 Score=107.13 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=50.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC---CCCC-ChhHHHHHHHHHHHHHHHHHHHHhhc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG---GTKM-DTASMLDEAIRYVKFLKRQIRLLQSN 174 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~-dkasIL~~AI~YIk~Lq~~v~~L~~~ 174 (236)
..|++.||+||++||++|..|+.+||. +.|. +|++||..||+||++|++++++++..
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~ 67 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLN 67 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 679999999999999999999999994 4565 79999999999999999999998754
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=6.2e-14 Score=104.85 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=54.2
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHhhccc
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRLLQSNQC 176 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~~ 176 (236)
..|+..||+||..||++|..|+++||. +.|++|+.||.+|++||+.|+.+.+.|+.+..
T Consensus 3 ~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~ 64 (80)
T 1nlw_A 3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQID 64 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999995 47899999999999999999999999887653
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.27 E-value=1.4e-12 Score=94.90 Aligned_cols=52 Identities=25% Similarity=0.467 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC--CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG--GTKMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~--~~K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
..|+..||+|+..||+.|..||++||. ..|++|+.||..||+||.+|++.++
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 569999999999999999999999996 5799999999999999999998653
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.15 E-value=4.8e-11 Score=84.68 Aligned_cols=52 Identities=21% Similarity=0.308 Sum_probs=47.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
..|+.-||+|+..||+.|..||.+||. ..|++|+.||..||+||+.|+..++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999999996 5799999999999999999998764
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.10 E-value=6.5e-11 Score=107.83 Aligned_cols=51 Identities=22% Similarity=0.449 Sum_probs=43.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCC-CCCCCChhHHHHHHHHHHHHHHHHH
Q 047850 118 DPQSVAARHRREKISEKIRILQRLVP-GGTKMDTASMLDEAIRYVKFLKRQI 168 (236)
Q Consensus 118 ~~hs~~ER~RR~kin~~~~~Lr~LVP-~~~K~dkasIL~~AI~YIk~Lq~~v 168 (236)
.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+..-
T Consensus 14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999999999 4689999999999999999998643
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=1.4e-10 Score=106.98 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=47.5
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCC----CCCCCChhHHHHHHHHHHHHHHHHH
Q 047850 117 DDPQSVAARHRREKISEKIRILQRLVP----GGTKMDTASMLDEAIRYVKFLKRQI 168 (236)
Q Consensus 117 ~~~hs~~ER~RR~kin~~~~~Lr~LVP----~~~K~dkasIL~~AI~YIk~Lq~~v 168 (236)
+++|+.+||+||++||+.|.+|+.||| ...|+||++||..||+|||.|+...
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 378999999999999999999999999 5689999999999999999998543
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.86 E-value=2.9e-09 Score=80.07 Aligned_cols=48 Identities=21% Similarity=0.474 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhccCCCC----CCCChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 128 REKISEKIRILQRLVPGG----TKMDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 128 R~kin~~~~~Lr~LVP~~----~K~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
|..||++|.+|..|||.+ .|.+|++||..|||||++||++++.+....
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999974 478999999999999999999888876543
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.78 E-value=1.5e-09 Score=78.75 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHH
Q 047850 122 VAARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKR 166 (236)
Q Consensus 122 ~~ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~ 166 (236)
.-||+|+..||+.|..||++||. ..|++|..||..||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 34788899999999999999996 5799999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.32 E-value=1e-06 Score=67.93 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhccCCC---CCCCChhHHHHHHHHHHHHHHHHHHHHhh
Q 047850 124 ARHRREKISEKIRILQRLVPG---GTKMDTASMLDEAIRYVKFLKRQIRLLQS 173 (236)
Q Consensus 124 ER~RR~kin~~~~~Lr~LVP~---~~K~dkasIL~~AI~YIk~Lq~~v~~L~~ 173 (236)
||.|=..||+.|..||.+||. ..|+.|..+|..||+||+.|+..++.-..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467778899999999999995 57999999999999999999998876443
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=59.30 E-value=12 Score=30.22 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhccCCC----CCCCChhHHHHHHHHHHHHH
Q 047850 129 EKISEKIRILQRLVPG----GTKMDTASMLDEAIRYVKFL 164 (236)
Q Consensus 129 ~kin~~~~~Lr~LVP~----~~K~dkasIL~~AI~YIk~L 164 (236)
-.|.-.|..|+.+||. ..++-|..||..|.|++..|
T Consensus 94 PtId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 94 PTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CCHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred CccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 3577899999999994 47788999999999998876
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.06 E-value=21 Score=24.38 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 047850 124 ARHRREKISEKIRILQR 140 (236)
Q Consensus 124 ER~RR~kin~~~~~Lr~ 140 (236)
||++|.+...++.+.+.
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 45555555566666553
No 21
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=36.86 E-value=42 Score=19.18 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 047850 151 ASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 151 asIL~~AI~YIk~Lq~~v~ 169 (236)
.+-|-+|-.|+.+|+.+++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4567788888888887665
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=31.69 E-value=35 Score=25.05 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc
Q 047850 154 LDEAIRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 154 L~~AI~YIk~Lq~~v~~L~~~~~~ 177 (236)
++.||+-|.-||.+|.+|+.++..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~ 38 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNS 38 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999877644
No 23
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=31.62 E-value=57 Score=19.02 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHHHHHHHH
Q 047850 147 KMDTASMLDEAIRYVKFLKR 166 (236)
Q Consensus 147 K~dkasIL~~AI~YIk~Lq~ 166 (236)
++...-+|-+|.+||...++
T Consensus 1 ~~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 35667789999999987765
No 24
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.48 E-value=55 Score=23.16 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhccccC
Q 047850 158 IRYVKFLKRQIRLLQSNQCNI 178 (236)
Q Consensus 158 I~YIk~Lq~~v~~L~~~~~~~ 178 (236)
..||+.|+.+|+.||......
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 359999999999999876553
No 25
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.55 E-value=30 Score=23.32 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhhcccc
Q 047850 158 IRYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 158 I~YIk~Lq~~v~~L~~~~~~ 177 (236)
-.||..|+.+|..|+.....
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999877654
No 26
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=28.00 E-value=32 Score=23.03 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 047850 159 RYVKFLKRQIRLLQSNQCN 177 (236)
Q Consensus 159 ~YIk~Lq~~v~~L~~~~~~ 177 (236)
.||..|+.+|..|+.++..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~ 40 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKT 40 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6777777777777766543
No 27
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=27.98 E-value=37 Score=23.31 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhccccC
Q 047850 158 IRYVKFLKRQIRLLQSNQCNI 178 (236)
Q Consensus 158 I~YIk~Lq~~v~~L~~~~~~~ 178 (236)
-.||..|+.+|+.||.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999876543
No 28
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=27.45 E-value=28 Score=27.88 Aligned_cols=31 Identities=13% Similarity=0.243 Sum_probs=22.2
Q ss_pred hccCCC-CCCCChhHHHHHHHHHHHHHHHHHHH
Q 047850 139 QRLVPG-GTKMDTASMLDEAIRYVKFLKRQIRL 170 (236)
Q Consensus 139 r~LVP~-~~K~dkasIL~~AI~YIk~Lq~~v~~ 170 (236)
..++|+ +...+ ...|..+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~~-~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWKD-QRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCCS-TTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcCC-HHHHHHHHHHHHHHHHHHhc
Confidence 346776 44444 56899999999999998864
No 29
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=26.90 E-value=33 Score=29.17 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 047850 128 REKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSN 174 (236)
Q Consensus 128 R~kin~~~~~Lr~LVP~~~K~dkasIL~~AI~YIk~Lq~~v~~L~~~ 174 (236)
|..++.-...|+.|+-. .=..+-.++.+||+|+|.|-.-+..|+..
T Consensus 53 ~~Dl~~F~~QL~qL~~~-~i~~Tre~v~d~l~YLkkLD~l~~~Lq~h 98 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKD-DISNTQEIIKDVLEYLKKLDEIYGSLRNH 98 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-SCSTTHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777632 22357788999999999998888777644
No 30
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.63 E-value=1.4e+02 Score=22.43 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 047850 153 MLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 153 IL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
..+.|=+||.+|.++|+-|+...
T Consensus 64 f~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 64 FDEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhHHHHHHHHHhHHHH
Confidence 34578899999999999998764
No 31
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.62 E-value=78 Score=20.25 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 047850 154 LDEAIRYVKFLKRQIRLLQSN 174 (236)
Q Consensus 154 L~~AI~YIk~Lq~~v~~L~~~ 174 (236)
+.+--+||++|+++..+|+.-
T Consensus 5 vkelknyiqeleernaelknl 25 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhH
Confidence 345668999999888887643
No 32
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.44 E-value=87 Score=19.76 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHhhcc
Q 047850 148 MDTASMLDEAIRYVKFLKRQIRLLQSNQ 175 (236)
Q Consensus 148 ~dkasIL~~AI~YIk~Lq~~v~~L~~~~ 175 (236)
|..+.-|+++-+-|..|+.+++.|+.++
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEK 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567889999999999999999998764
No 33
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=24.09 E-value=43 Score=19.14 Aligned_cols=11 Identities=45% Similarity=0.480 Sum_probs=7.5
Q ss_pred ccHHHHHHHHH
Q 047850 120 QSVAARHRREK 130 (236)
Q Consensus 120 hs~~ER~RR~k 130 (236)
-+-+||+||..
T Consensus 9 psgaerrrrra 19 (26)
T 1g70_B 9 PSGAERRRRRA 19 (26)
T ss_pred CchHHHHHHHH
Confidence 45778888754
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.60 E-value=48 Score=23.46 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhc
Q 047850 158 IRYVKFLKRQIRLLQSN 174 (236)
Q Consensus 158 I~YIk~Lq~~v~~L~~~ 174 (236)
-.||+.|+.+|..|+..
T Consensus 28 ~~~i~~LE~~v~~le~~ 44 (70)
T 1gd2_E 28 EDHLKALETQVVTLKEL 44 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35777777777777643
No 35
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=21.49 E-value=49 Score=21.94 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 047850 159 RYVKFLKRQIRLLQSN 174 (236)
Q Consensus 159 ~YIk~Lq~~v~~L~~~ 174 (236)
.||..|+.+|+.|+..
T Consensus 44 ~~~~~L~~ri~~Le~~ 59 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEE 59 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555544
No 36
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.79 E-value=39 Score=23.50 Aligned_cols=25 Identities=8% Similarity=-0.014 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCc
Q 047850 158 IRYVKFLKRQIRLLQSNQCNIVGDD 182 (236)
Q Consensus 158 I~YIk~Lq~~v~~L~~~~~~~~~~~ 182 (236)
..||..|+.+|+.||.....+.+..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~~~ 68 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFPRE 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3588888888888887766554433
No 37
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=20.69 E-value=63 Score=25.99 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=22.5
Q ss_pred hccCCC-CCCCChhHHHHHHHHHHHHHHHHHH
Q 047850 139 QRLVPG-GTKMDTASMLDEAIRYVKFLKRQIR 169 (236)
Q Consensus 139 r~LVP~-~~K~dkasIL~~AI~YIk~Lq~~v~ 169 (236)
..++|+ +...+ ...++.+++||+.|.+++.
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhc
Confidence 457787 44444 4788999999999988774
Done!