Query 047851
Match_columns 120
No_of_seqs 105 out of 1041
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1470 Phosphatidylinositol t 99.8 4.3E-21 9.3E-26 148.9 7.4 98 2-104 171-268 (324)
2 PF00650 CRAL_TRIO: CRAL/TRIO 99.8 2.6E-21 5.6E-26 134.6 5.4 75 2-78 85-159 (159)
3 KOG1471 Phosphatidylinositol t 99.8 1.5E-20 3.3E-25 145.1 6.2 78 2-82 183-260 (317)
4 smart00516 SEC14 Domain in hom 99.8 9E-20 1.9E-24 126.8 7.2 76 2-80 83-158 (158)
5 cd00170 SEC14 Sec14p-like lipi 99.8 1.6E-18 3.4E-23 118.7 7.0 73 2-78 85-157 (157)
6 PF13716 CRAL_TRIO_2: Divergen 98.8 2.4E-10 5.2E-15 79.3 -2.2 75 2-81 70-146 (149)
7 KOG4406 CDC42 Rho GTPase-activ 97.1 0.00081 1.8E-08 54.5 4.9 59 6-69 155-213 (467)
8 PF03907 Spo7: Spo7-like prote 74.0 4 8.7E-05 30.4 3.1 95 17-113 107-206 (207)
9 PF04378 RsmJ: Ribosomal RNA s 39.7 19 0.00041 27.5 1.5 29 18-46 206-234 (245)
10 PF04838 Baculo_LEF5: Baculovi 38.3 22 0.00048 25.3 1.6 75 3-82 18-106 (159)
11 COG2961 ComJ Protein involved 34.4 30 0.00064 26.9 1.9 27 18-44 237-263 (279)
12 PF03641 Lysine_decarbox: Poss 28.2 70 0.0015 21.6 2.8 41 19-64 86-131 (133)
13 PF08655 DASH_Ask1: DASH compl 26.8 10 0.00022 23.2 -1.4 36 59-94 19-56 (66)
14 KOG0534 NADH-cytochrome b-5 re 20.7 42 0.00092 26.2 0.6 38 2-42 202-239 (286)
15 PRK05287 hypothetical protein; 20.1 1.4E+02 0.0031 22.8 3.3 14 76-89 129-142 (250)
No 1
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]
Probab=99.84 E-value=4.3e-21 Score=148.94 Aligned_cols=98 Identities=40% Similarity=0.758 Sum_probs=89.3
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKATL 81 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 81 (120)
+|.++++||+||||||+..+++|+||+|..+|++++|||+++|+.||+|+.. .+++.++||+++||..+||+...
T Consensus 171 ~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~wkiikpflDp~t~~Kv~F~~~-----~~~l~~~~d~~~l~s~~GG~~~~ 245 (324)
T KOG1470|consen 171 LKELLHILQDHYPERLGKALLVNAPWIFQPFWKIIKPFLDPKTASKVKFVEP-----KDDLSEYFDESQLPSLFGGKLLF 245 (324)
T ss_pred HHHHHHHHHHhChHHhhhhhhcCChHHHHHHHHHhhhccChhhhceeEEecC-----hhHHHhhCCccccchhhCCCccc
Confidence 6889999999999999999999999999999999999999999999999864 46699999999999999999999
Q ss_pred CCCcHHHHHHHhHhhHHHhhhhc
Q 047851 82 QYDHEEFSRLMAQDDVKTARFWG 104 (120)
Q Consensus 82 ~~~~~~~~~~~~~~d~~~~~~~~ 104 (120)
.|.+..+|+.|.+.+...+..|.
T Consensus 246 ~y~~e~~~~~~~~~~~~~~~~~~ 268 (324)
T KOG1470|consen 246 EYTHEEYWPQMKEDDSSLRLEYE 268 (324)
T ss_pred ccCCcchhhhhhhhHHHHHHhHH
Confidence 99999999999988765444443
No 2
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....
Probab=99.84 E-value=2.6e-21 Score=134.64 Aligned_cols=75 Identities=40% Similarity=0.763 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGK 78 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~ 78 (120)
+|.++++++++||+|++++|++|+|++++++|+++++||++++++||.++++.+ +.++|.++||+++||.+|||+
T Consensus 85 ~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~~--~~~~l~~~i~~~~lP~~~GG~ 159 (159)
T PF00650_consen 85 LKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREKIVFHSGSD--WKAKLKEYIDPEQLPVEYGGT 159 (159)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCTEEEECTTC--HCHHHCCCSTGGGSBGGGTSS
T ss_pred hhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhheeEEEECCcc--cHHHHHhhCCHhHCchhcCCC
Confidence 578999999999999999999999999999999999999999999999996544 447999999999999999996
No 3
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]
Probab=99.82 E-value=1.5e-20 Score=145.06 Aligned_cols=78 Identities=31% Similarity=0.606 Sum_probs=72.7
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKATL 81 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 81 (120)
+|+++.++|++||++++++||||+|++|+++|++++|||+++|++||++.+++ +.++|.++|++++||.+|||++++
T Consensus 183 ~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~---~~~~L~k~i~~~~LP~~yGG~~~~ 259 (317)
T KOG1471|consen 183 LKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSK---DKESLLKYIPPEVLPEEYGGTCGD 259 (317)
T ss_pred HHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCC---chhhhhhhCCHhhCccccCCCccc
Confidence 68899999999999999999999999999999999999999999999944444 489999999999999999999997
Q ss_pred C
Q 047851 82 Q 82 (120)
Q Consensus 82 ~ 82 (120)
.
T Consensus 260 ~ 260 (317)
T KOG1471|consen 260 L 260 (317)
T ss_pred c
Confidence 4
No 4
>smart00516 SEC14 Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.80 E-value=9e-20 Score=126.76 Aligned_cols=76 Identities=42% Similarity=0.798 Sum_probs=71.7
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKAT 80 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~ 80 (120)
+|+++++++++||+|++++||+|+|++++++|+++++|+++++++||++++++ +.+.|.++||+++||++|||++.
T Consensus 83 lk~~~~~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~---~~~~L~~~i~~~~lP~~~GG~~~ 158 (158)
T smart00516 83 LRKILKILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDEKTREKIRFVGND---SKEELLEYIDPEQLPEELGGTLD 158 (158)
T ss_pred HHHHHHHHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcChhhhccEEEeCCC---CHHHHHhhCCHhhCcHhhCCCCC
Confidence 68899999999999999999999999999999999999999999999999764 37889999999999999999974
No 5
>cd00170 SEC14 Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.
Probab=99.76 E-value=1.6e-18 Score=118.71 Aligned_cols=73 Identities=37% Similarity=0.760 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGK 78 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~ 78 (120)
+|+++++++++||++++++|++|+|++++++|+++++|+++++++||.+++++ .++|.++||+++||.+|||+
T Consensus 85 ~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~~~~~ki~~~~~~----~~~L~~~i~~~~Lp~~~GG~ 157 (157)
T cd00170 85 LKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKKIVFLGSD----KEELLKYIDKEQLPEEYGGT 157 (157)
T ss_pred HHHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCHhhhhhEEEecCC----HHHHHhhCChhhCcHhhCCC
Confidence 58899999999999999999999999999999999999999999999999642 68999999999999999996
No 6
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A.
Probab=98.82 E-value=2.4e-10 Score=79.35 Aligned_cols=75 Identities=17% Similarity=0.400 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHH-HHHHHhcCHhh-hcceeEECCCChhhHHHHhccCCCCCCCcccCCCc
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIW-KAIRYFLDPRT-TQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKA 79 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~-~ivk~~l~~~t-~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~ 79 (120)
++++.+++...|+..|+++||+|++++++.+. .+.+++.+.+. ..||.++.+ .++|.++||+++||+.+||+.
T Consensus 70 l~~~~~~l~~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~s-----l~~L~~~i~~~qL~~~lp~~~ 144 (149)
T PF13716_consen 70 LKQLYKLLPRKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSS-----LSELSKHIDPSQLPESLPGVL 144 (149)
T ss_dssp HHHTTTSS-HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESS-----TCGGGGTSGGGG------HHH
T ss_pred HHHHHHHHHHHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECC-----HHHHHhhCCHHHhcccCCCEE
Confidence 46677788899999999999999999999999 55577788888 999998864 789999999999999999888
Q ss_pred CC
Q 047851 80 TL 81 (120)
Q Consensus 80 ~~ 81 (120)
++
T Consensus 145 ~~ 146 (149)
T PF13716_consen 145 QY 146 (149)
T ss_dssp --
T ss_pred ec
Confidence 73
No 7
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=97.12 E-value=0.00081 Score=54.49 Aligned_cols=59 Identities=15% Similarity=0.358 Sum_probs=50.5
Q ss_pred HHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCC
Q 047851 6 IYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVE 69 (120)
Q Consensus 6 ~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~ 69 (120)
..-+-.+|-.-++.+|+|.+.|+.+++|++++||++.+..+||.-+. ..++|.+++.-+
T Consensus 155 Yke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~rKi~Y~n-----~lseL~~~l~l~ 213 (467)
T KOG4406|consen 155 YKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFTRKIIYFN-----SLSELFEALKLN 213 (467)
T ss_pred HHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhhceeEEee-----hHHHHHHhhhhh
Confidence 33445567788999999999999999999999999999999999885 389999987643
No 8
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=74.04 E-value=4 Score=30.41 Aligned_cols=95 Identities=20% Similarity=0.255 Sum_probs=52.1
Q ss_pred hchheEEcCchHHHHHHHHHHHh---cCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCC-cCCCCCcHHHHHHH
Q 047851 17 LAISILYNPPKFFESIWKAIRYF---LDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGK-ATLQYDHEEFSRLM 92 (120)
Q Consensus 17 l~~i~iin~P~~~~~~~~ivk~~---l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~-~~~~~~~~~~~~~~ 92 (120)
--+++++..||.=.+ +..++-+ .......++...+..++.......+.......|. -||. .+.......+.+.+
T Consensus 107 N~kLV~i~~p~~~~~-~d~i~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~pr-~G~~~vKLlL~pk~Fs~~f 184 (207)
T PF03907_consen 107 NVKLVKIKSPWWDEL-TDWIRFISRRVALFFLHKGLPSSEQNRSSIYRFWSSVQSRSQPR-PGGDDVKLLLNPKSFSPEF 184 (207)
T ss_pred eeEEEEecCcHHHHH-HHHHHHHhhccccccccccccCCCCCcchHHHHhhhhhccCCCC-CCCCceEEEecCCcCChHH
Confidence 345688888887665 6666532 2211222222222122112123333334445555 4444 44555666666677
Q ss_pred hHh-hHHHhhhhccCCCCCCcc
Q 047851 93 AQD-DVKTARFWGLDDQRPRKI 113 (120)
Q Consensus 93 ~~~-d~~~~~~~~~~~~~~~~~ 113 (120)
.|. |.-+..||..|+.||+..
T Consensus 185 REgWE~YR~efW~rE~~RR~~~ 206 (207)
T PF03907_consen 185 REGWEIYRSEFWERENERRRQL 206 (207)
T ss_pred HhhHHHHHHHHHHhccHhhhhc
Confidence 764 567999999999998864
No 9
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=39.67 E-value=19 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=20.7
Q ss_pred chheEEcCchHHHHHHHHHHHhcCHhhhc
Q 047851 18 AISILYNPPKFFESIWKAIRYFLDPRTTQ 46 (120)
Q Consensus 18 ~~i~iin~P~~~~~~~~ivk~~l~~~t~~ 46 (120)
..++|||+||-+.....-+-++|.+.+.+
T Consensus 206 SGm~iiNPPw~l~~~l~~~l~~L~~~L~~ 234 (245)
T PF04378_consen 206 SGMLIINPPWTLDEELEEILPWLAETLAQ 234 (245)
T ss_dssp EEEEEES--TTHHHHHHHHHHHHHHHSST
T ss_pred ceEEEEcCCccHHHHHHHHHHHHHHHhCc
Confidence 46899999999998888887777665443
No 10
>PF04838 Baculo_LEF5: Baculoviridae late expression factor 5 ; InterPro: IPR006923 This is a family of Baculoviridae late expression factor 5, required for late and very late gene expression.; GO: 0006355 regulation of transcription, DNA-dependent
Probab=38.33 E-value=22 Score=25.30 Aligned_cols=75 Identities=13% Similarity=0.254 Sum_probs=50.2
Q ss_pred HHHHHHHhhhhHHhhc--hheEEcCchHHHHHHHHHHHhcCH--hhhcceeE----------ECCCChhhHHHHhccCCC
Q 047851 3 RDIIYIFQNHYPERLA--ISILYNPPKFFESIWKAIRYFLDP--RTTQKLKF----------IYPNNKESLAFMKSSFDV 68 (120)
Q Consensus 3 k~i~~~l~~~yP~rl~--~i~iin~P~~~~~~~~ivk~~l~~--~t~~Ki~~----------~~~~~~~~~~~L~~~i~~ 68 (120)
+.++..+..+||..++ ...++|+.=.|.++|+-+- -++. +-|+-|++ ...++-....+|.+.++.
T Consensus 18 ~~LI~fL~~nyp~nVKNkTFNF~nTGHlFHsLYAYvP-~~s~~~kERKQIRLs~dcI~kL~~nT~NdfKLY~Elf~~i~~ 96 (159)
T PF04838_consen 18 KELIDFLITNYPKNVKNKTFNFANTGHLFHSLYAYVP-SVSNVEKERKQIRLSEDCIEKLFVNTINDFKLYEELFDMIDD 96 (159)
T ss_pred HHHHHHHHhhcccccccCeeecCCCchhhhhhhhccC-CCchHhHHHHHhhhhHHHHHHHHHhcCchHHHHHHHHHHHHc
Confidence 5789999999999999 9999999999999998874 3444 44444544 112222344566666653
Q ss_pred CCCCcccCCCcCCC
Q 047851 69 ENLPTEFGGKATLQ 82 (120)
Q Consensus 69 ~~LP~~~GG~~~~~ 82 (120)
+.+. .+|+|+
T Consensus 97 ~~~~----~~CPCe 106 (159)
T PF04838_consen 97 NKLK----EKCPCE 106 (159)
T ss_pred cCCC----CCCCHH
Confidence 3332 357764
No 11
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=34.44 E-value=30 Score=26.90 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=21.7
Q ss_pred chheEEcCchHHHHHHHHHHHhcCHhh
Q 047851 18 AISILYNPPKFFESIWKAIRYFLDPRT 44 (120)
Q Consensus 18 ~~i~iin~P~~~~~~~~ivk~~l~~~t 44 (120)
..++|||+||-+.--...+-|+|...+
T Consensus 237 SGMivINPPwtle~ql~~~LP~L~~~L 263 (279)
T COG2961 237 SGMIVINPPWTLEQQLRAALPWLTTLL 263 (279)
T ss_pred eeEEEECCCccHHHHHHHHHHHHHHHh
Confidence 368999999999988888888775543
No 12
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=28.24 E-value=70 Score=21.56 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=30.8
Q ss_pred hheEEcCchHHHHHHHHH-----HHhcCHhhhcceeEECCCChhhHHHHhc
Q 047851 19 ISILYNPPKFFESIWKAI-----RYFLDPRTTQKLKFIYPNNKESLAFMKS 64 (120)
Q Consensus 19 ~i~iin~P~~~~~~~~iv-----k~~l~~~t~~Ki~~~~~~~~~~~~~L~~ 64 (120)
-++++|..-+.+-++..+ ..|+++.....+.++.+ .+++.+
T Consensus 86 Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~-----~~e~~~ 131 (133)
T PF03641_consen 86 PIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDD-----PEEALE 131 (133)
T ss_dssp EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESS-----HHHHHH
T ss_pred CEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCC-----HHHHHh
Confidence 589999876667777766 46899999999999853 555544
No 13
>PF08655 DASH_Ask1: DASH complex subunit Ask1; InterPro: IPR013964 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.76 E-value=10 Score=23.19 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=29.1
Q ss_pred HHHHhccCCCCCCC--cccCCCcCCCCCcHHHHHHHhH
Q 047851 59 LAFMKSSFDVENLP--TEFGGKATLQYDHEEFSRLMAQ 94 (120)
Q Consensus 59 ~~~L~~~i~~~~LP--~~~GG~~~~~~~~~~~~~~~~~ 94 (120)
....+..|..+.|| ++||..|....+...||+.+-+
T Consensus 19 ~s~~~~iit~~IlP~v~rY~~~s~~i~~~~~fwk~fFe 56 (66)
T PF08655_consen 19 FSRCHRIITDKILPAVERYGESSEKIWDSAKFWKQFFE 56 (66)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566677788899 7999999988888899988755
No 14
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=20.73 E-value=42 Score=26.19 Aligned_cols=38 Identities=24% Similarity=0.554 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCH
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDP 42 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~ 42 (120)
.|+-+.-++..||+|++.-++++.|. -.|+--.+++++
T Consensus 202 lr~eL~~la~~~p~rf~~~y~v~~~~---~~w~~~~g~It~ 239 (286)
T KOG0534|consen 202 LREELEELASKYPERFKVWYVVDQPP---EIWDGSVGFITK 239 (286)
T ss_pred hHHHHHHHHhhCcceEEEEEEEcCCc---ccccCccCccCH
Confidence 57888999999999999999999998 555544444433
No 15
>PRK05287 hypothetical protein; Provisional
Probab=20.09 E-value=1.4e+02 Score=22.84 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=8.9
Q ss_pred CCCcCCCCCcHHHH
Q 047851 76 GGKATLQYDHEEFS 89 (120)
Q Consensus 76 GG~~~~~~~~~~~~ 89 (120)
||+|......=-+|
T Consensus 129 GG~C~FDLP~yh~W 142 (250)
T PRK05287 129 GGCCSFDLPALHAW 142 (250)
T ss_pred CcccCCCCHHHHHH
Confidence 99999654443344
Done!