Query 047851
Match_columns 120
No_of_seqs 105 out of 1041
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r5l_A Alpha-TTP, protein (alp 99.9 3.4E-23 1.2E-27 154.1 6.2 89 2-94 160-248 (262)
2 3hx3_A Retinaldehyde-binding p 99.9 5.8E-23 2E-27 158.2 6.3 88 2-94 219-306 (316)
3 1aua_A Phosphatidylinositol tr 99.9 1.7E-22 6E-27 153.3 7.8 78 2-82 191-268 (296)
4 3q8g_A CRAL-TRIO domain-contai 99.8 1.2E-21 4E-26 151.3 4.1 78 2-82 206-283 (320)
5 1olm_A SEC14-like protein 2; l 99.8 3.3E-21 1.1E-25 152.0 6.3 86 2-91 171-256 (403)
6 3pg7_A Neurofibromin; SEC lipi 97.4 4.7E-05 1.6E-09 56.9 1.5 65 2-71 79-144 (256)
7 3peg_A Neurofibromin; SEC14 do 95.6 0.00098 3.4E-08 50.6 -1.7 63 3-70 99-162 (290)
8 2oo3_A Protein involved in cat 30.5 22 0.00076 26.6 1.8 27 18-44 238-264 (283)
9 1pq1_B BCL2-like protein 11; B 23.9 61 0.0021 16.1 2.1 17 2-18 12-28 (33)
10 3sbx_A Putative uncharacterize 20.2 78 0.0027 22.0 2.9 45 18-67 139-188 (189)
No 1
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=99.88 E-value=3.4e-23 Score=154.10 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=79.3
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKATL 81 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 81 (120)
+|++++++|++||+||+++||||+|++|+++|++++|||+++|++||++++++ +.++|.++|| ++||++|||+++.
T Consensus 160 ~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~~---~~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 160 AKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNN---YKQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp HHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSS---CHHHHHHHST-TTSCGGGTCSSCC
T ss_pred HHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCCC---cHHHHHHHhh-hhCcHhhCCCCCC
Confidence 68899999999999999999999999999999999999999999999998653 4789999999 9999999999987
Q ss_pred CCCcHHHHHHHhH
Q 047851 82 QYDHEEFSRLMAQ 94 (120)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (120)
..+....|....+
T Consensus 236 ~~~~~~~w~~~l~ 248 (262)
T 1r5l_A 236 MEDICQEWTNFIM 248 (262)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655443
No 2
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=99.87 E-value=5.8e-23 Score=158.19 Aligned_cols=88 Identities=18% Similarity=0.437 Sum_probs=81.4
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKATL 81 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 81 (120)
+|++++++|++||+||+++||||+|++|.++|+++++||+++|++||.+++++ .++|.++||+++||++|||+++
T Consensus 219 ~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~----~~~L~~~I~~~~LP~eyGG~~~- 293 (316)
T 3hx3_A 219 LRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD----LSGFYQEIDENILPSDFGGTLP- 293 (316)
T ss_dssp HHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC----CHHHHHHSCGGGSBGGGTSSBC-
T ss_pred HHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC----HHHHHhhCCHhhCcHhhCCCCC-
Confidence 68999999999999999999999999999999999999999999999998653 4789999999999999999998
Q ss_pred CCCcHHHHHHHhH
Q 047851 82 QYDHEEFSRLMAQ 94 (120)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (120)
.+++..|++.+..
T Consensus 294 ~~d~~~~~~~l~~ 306 (316)
T 3hx3_A 294 KYDGKAVAEQLFG 306 (316)
T ss_dssp CCCHHHHHHHHC-
T ss_pred CcChhHHHHHHcC
Confidence 4899999988765
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=99.87 E-value=1.7e-22 Score=153.34 Aligned_cols=78 Identities=33% Similarity=0.557 Sum_probs=73.6
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKATL 81 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 81 (120)
+|++++++|++||+||+++||||+|++|.++|+++++||+++|++||+|++++ +.++|.++||+++||++|||++++
T Consensus 191 ~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~---~~~~L~~~i~~~~LP~~yGG~~~~ 267 (296)
T 1aua_A 191 VREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSS---YQKELLKQIPAENLPVKFGGKSEV 267 (296)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSC---CHHHHTTTSCSSSSBGGGTSCBCC
T ss_pred HHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcc---cHHHHHhhCCHhhCcHHhCCCCCC
Confidence 57889999999999999999999999999999999999999999999999764 478899999999999999999987
Q ss_pred C
Q 047851 82 Q 82 (120)
Q Consensus 82 ~ 82 (120)
.
T Consensus 268 ~ 268 (296)
T 1aua_A 268 D 268 (296)
T ss_dssp C
T ss_pred C
Confidence 5
No 4
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=99.83 E-value=1.2e-21 Score=151.34 Aligned_cols=78 Identities=32% Similarity=0.554 Sum_probs=73.5
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKATL 81 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 81 (120)
+|++++++|++||+||+++||||+|++|.++|+++++||+++|++||.|++++ +.++|.++||+++||++|||++++
T Consensus 206 ~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~~---~~~~L~~~i~~~~LP~~yGG~~~~ 282 (320)
T 3q8g_A 206 IKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSS---YKKELLKQIPIENLPVKYGGTSVL 282 (320)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCTT---HHHHHHHHSCGGGSBGGGTSCBCC
T ss_pred HHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCCC---cHHHHHhhCChhhCChhhCCCCCC
Confidence 57899999999999999999999999999999999999999999999999754 468999999999999999999997
Q ss_pred C
Q 047851 82 Q 82 (120)
Q Consensus 82 ~ 82 (120)
.
T Consensus 283 ~ 283 (320)
T 3q8g_A 283 H 283 (320)
T ss_dssp S
T ss_pred C
Confidence 4
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=99.83 E-value=3.3e-21 Score=151.97 Aligned_cols=86 Identities=23% Similarity=0.442 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCCCcccCCCcCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENLPTEFGGKATL 81 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~LP~~~GG~~~~ 81 (120)
+|++++++|++||+||+++||||+|++|.++|++++|||+++|++||+|++++ +.++|.++||+++||++|||++++
T Consensus 171 ~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~~---~~~~L~~~I~~~~LP~~yGG~~~~ 247 (403)
T 1olm_A 171 YGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGAN---WKEVLLKHISPDQVPVEYGGTMTD 247 (403)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTT---HHHHHTTTSCGGGSBGGGTSSBCC
T ss_pred HHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEEChh---HHHHHHhhcChhhCchhhCCCcCC
Confidence 58999999999999999999999999999999999999999999999999652 578999999999999999999997
Q ss_pred CCCcHHHHHH
Q 047851 82 QYDHEEFSRL 91 (120)
Q Consensus 82 ~~~~~~~~~~ 91 (120)
. +++.+|..
T Consensus 248 ~-~~~~~c~~ 256 (403)
T 1olm_A 248 P-DGNPKCKS 256 (403)
T ss_dssp T-TCCTTCTT
T ss_pred C-CCCccccc
Confidence 3 55444443
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=97.38 E-value=4.7e-05 Score=56.88 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhhHHhhchheEEcCchHHHHHHHH-HHHhcCHhhhcceeEECCCChhhHHHHhccCCCCCC
Q 047851 2 IRDIIYIFQNHYPERLAISILYNPPKFFESIWKA-IRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVENL 71 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~~i-vk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~L 71 (120)
++++..++...|...++++|++|++++++..+.. .+++.+.+..+|+.++++ ..+|.++|+.++|
T Consensus 79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s-----l~eL~~~i~~~~L 144 (256)
T 3pg7_A 79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC-----PGKLAEHIEHEQQ 144 (256)
T ss_dssp HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS-----TTGGGGTSCGGGC
T ss_pred HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC-----HHHHHhhcCHHHc
Confidence 3556667788899999999999999999977665 467777789999999964 6889999976654
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=95.61 E-value=0.00098 Score=50.63 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhHHhhchheEEcCchHHHHHH-HHHHHhcCHhhhcceeEECCCChhhHHHHhccCCCCC
Q 047851 3 RDIIYIFQNHYPERLAISILYNPPKFFESIW-KAIRYFLDPRTTQKLKFIYPNNKESLAFMKSSFDVEN 70 (120)
Q Consensus 3 k~i~~~l~~~yP~rl~~i~iin~P~~~~~~~-~ivk~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~~~~ 70 (120)
+++..++...|+..++++|++|++.+|+... ...+++.+.+..+|+.+++. ...|.+++++++
T Consensus 99 ~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~-----~~~L~~~i~~~~ 162 (290)
T 3peg_A 99 SKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC-----PGKLAEHIEHEQ 162 (290)
T ss_dssp GGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS-----SCC---------
T ss_pred HHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC-----HHHHHhhCCHHH
Confidence 4556677889999999999999999998755 46678888899999999864 344777887664
No 8
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=30.54 E-value=22 Score=26.56 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=21.7
Q ss_pred chheEEcCchHHHHHHHHHHHhcCHhh
Q 047851 18 AISILYNPPKFFESIWKAIRYFLDPRT 44 (120)
Q Consensus 18 ~~i~iin~P~~~~~~~~ivk~~l~~~t 44 (120)
..++|||+||-+.....-+-|+|.+..
T Consensus 238 sGm~viNpP~~l~~~~~~~l~~l~~~l 264 (283)
T 2oo3_A 238 CGLWIINPPYTFPSEIKLVLETLTTYF 264 (283)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHHHHHS
T ss_pred eeEEEECCchhHHHHHHHHHHHHHHHh
Confidence 468999999999988888777776544
No 9
>1pq1_B BCL2-like protein 11; BCL-XL/BIM, apoptosis; 1.65A {Mus musculus}
Probab=23.91 E-value=61 Score=16.15 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=13.3
Q ss_pred HHHHHHHHhhhhHHhhc
Q 047851 2 IRDIIYIFQNHYPERLA 18 (120)
Q Consensus 2 ~k~i~~~l~~~yP~rl~ 18 (120)
+|+|-+-|..+||-|+-
T Consensus 12 LRRIGDeFNa~ypRR~~ 28 (33)
T 1pq1_B 12 LRRIGDEFNETYTRRVF 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhcccchHHH
Confidence 46777888999998863
No 10
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=20.20 E-value=78 Score=21.96 Aligned_cols=45 Identities=9% Similarity=0.143 Sum_probs=32.6
Q ss_pred chheEEcCchHHHHHHHHHH-----HhcCHhhhcceeEECCCChhhHHHHhccCC
Q 047851 18 AISILYNPPKFFESIWKAIR-----YFLDPRTTQKLKFIYPNNKESLAFMKSSFD 67 (120)
Q Consensus 18 ~~i~iin~P~~~~~~~~ivk-----~~l~~~t~~Ki~~~~~~~~~~~~~L~~~i~ 67 (120)
+-|+++|..-+.+-+..++. .|++++-++.+.+..+ .+++.+.+.
T Consensus 139 kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~-----~ee~~~~l~ 188 (189)
T 3sbx_A 139 KSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDN-----LDDALQACA 188 (189)
T ss_dssp CCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESS-----HHHHHHHHC
T ss_pred CCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCC-----HHHHHHHhc
Confidence 56889998766666665543 4899999999999853 667665543
Done!