BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047852
         (422 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  174 bits (442), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 122/176 (69%), Gaps = 17/176 (9%)

Query: 5   NENDKLDEILLP-GFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPR-- 61
            E D L ++ LP GFRF+PTDEEL+  YL RK      S++LI ++D+YK+DPW LP   
Sbjct: 7   QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 66

Query: 62  ---EKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYK 118
              EKEWYF+ PRDRKY N +RPNRV G+G+WKATGTD+ I S+EG + +G+KK+LVFY 
Sbjct: 67  LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQR-VGIKKALVFYI 124

Query: 119 GKAAKGIKTDWMMHEFRLPSLIDSVPPKRFMDKTIPANDSWAICRIFKKTNSTAQR 174
           GKA KG KT+W+MHE+RL      + P R    T    D W +CRI+KK  S+AQ+
Sbjct: 125 GKAPKGTKTNWIMHEYRL------IEPSRRNGST--KLDDWVLCRIYKK-QSSAQK 171


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  174 bits (442), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 122/176 (69%), Gaps = 17/176 (9%)

Query: 5   NENDKLDEILLP-GFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPR-- 61
            E D L ++ LP GFRF+PTDEEL+  YL RK      S++LI ++D+YK+DPW LP   
Sbjct: 10  QETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKA 69

Query: 62  ---EKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYK 118
              EKEWYF+ PRDRKY N +RPNRV G+G+WKATGTD+ I S+EG + +G+KK+LVFY 
Sbjct: 70  LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTEGQR-VGIKKALVFYI 127

Query: 119 GKAAKGIKTDWMMHEFRLPSLIDSVPPKRFMDKTIPANDSWAICRIFKKTNSTAQR 174
           GKA KG KT+W+MHE+RL      + P R    T    D W +CRI+KK  S+AQ+
Sbjct: 128 GKAPKGTKTNWIMHEYRL------IEPSRRNGST--KLDDWVLCRIYKK-QSSAQK 174


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  168 bits (425), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 113/176 (64%), Gaps = 11/176 (6%)

Query: 1   MDERNENDKLDEI-LLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDL 59
           M  R E D   E+ L PGFRFHPTD+ELV  YL RK   + L + +I ++D+YK+DPWDL
Sbjct: 1   MGMRRERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDL 60

Query: 60  PRE-----KEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSL 114
           P       +EWYF+ PRDRKY N +RPNR  G G+WKATG D+P+  +   + +G+KK+L
Sbjct: 61  PERALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV--APRGRTLGIKKAL 118

Query: 115 VFYKGKAAKGIKTDWMMHEFRLPSLIDSVPPKRFMDKTIPANDSWAICRIFKKTNS 170
           VFY GKA +G+KTDW+MHE+RL     +    +     +   D W +CR++ K N 
Sbjct: 119 VFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRL---DDWVLCRLYNKKNE 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,686,466
Number of Sequences: 62578
Number of extensions: 520772
Number of successful extensions: 1453
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 6
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)