Query 047852
Match_columns 422
No_of_seqs 175 out of 949
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 9.7E-53 3.3E-57 385.9 13.3 163 2-170 4-171 (174)
2 1ut7_A No apical meristem prot 100.0 1.4E-52 4.9E-57 383.5 13.0 161 1-171 4-169 (171)
3 1cmb_A Met APO-repressor; DNA- 26.3 81 0.0028 26.3 4.5 37 21-61 50-86 (104)
4 1ldd_A APC2WHB, anaphase promo 15.9 81 0.0028 25.0 2.4 27 15-42 37-64 (74)
5 2c4b_A Barnase mcoeeti fusion; 13.1 1.7E+02 0.0058 26.0 3.9 33 23-58 4-38 (143)
6 3cpr_A Dihydrodipicolinate syn 7.7 1.2E+02 0.0041 29.0 1.0 18 14-32 118-135 (304)
7 2jv2_A Putative uncharacterize 7.6 1.9E+02 0.0064 23.1 2.0 29 24-53 26-54 (83)
8 3nr5_A MAF1, repressor of RNA 7.5 1E+02 0.0034 27.9 0.3 12 46-57 119-130 (164)
9 3fkr_A L-2-keto-3-deoxyarabona 7.5 1.7E+02 0.0057 28.1 1.9 19 13-32 109-130 (309)
10 3i9v_7 NADH-quinone oxidoreduc 7.3 9.6E+02 0.033 20.7 6.3 65 26-93 15-96 (129)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=9.7e-53 Score=385.86 Aligned_cols=163 Identities=48% Similarity=1.019 Sum_probs=130.8
Q ss_pred cccccccccCCCCCCCceECCChHHHHHHHHHHHHhCCCCCcCcceecccCCCCCCCCCC-----CCeeEEecccccccC
Q 047852 2 DERNENDKLDEILLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPR-----EKEWYFYCPRDRKYR 76 (422)
Q Consensus 2 ~e~~~m~k~~~~LPPGFRF~PTDEELV~~YLrpKI~g~pLp~~~I~evDVY~~ePWdLp~-----d~eWYFFtpr~rK~~ 76 (422)
+.+++++ ....|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+ +++||||+++++||+
T Consensus 4 ~~~~~~~-~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~ 82 (174)
T 3ulx_A 4 RRERDAE-AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYP 82 (174)
T ss_dssp -----CC-STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC---
T ss_pred ccccccc-cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccC
Confidence 3344444 3467999999999999999999999999999999999999999999999997 679999999999999
Q ss_pred CCCCCcccccCceeeecCCcccEEcCCCCEEEEEEEEEEeeeccCCCCCccCeEEEEEEcCCCCCCCCCccccCCCCCCC
Q 047852 77 NSARPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRLPSLIDSVPPKRFMDKTIPAN 156 (422)
Q Consensus 77 nG~R~~R~tGgG~WK~tG~~K~I~s~~Gg~vIG~KKtLvFY~Gr~~~g~KT~WvMhEY~L~~~~d~s~p~~~~d~~~~~~ 156 (422)
+|.|++|++++|+||++|++++|.+. +++||+||+|+||.|+++++.||+|+||||+|.+........ .......
T Consensus 83 ~g~R~nR~t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~---~~~~~~~ 157 (174)
T 3ulx_A 83 NGSRPNRAAGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGA---KKGSLRL 157 (174)
T ss_dssp --CCSCEEETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC--------------CC
T ss_pred CCCCceeecCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCccccc---ccCCCCC
Confidence 99999999999999999999999864 589999999999999999999999999999998753221000 1112345
Q ss_pred CcEEEEEEEecCCh
Q 047852 157 DSWAICRIFKKTNS 170 (422)
Q Consensus 157 de~VLCRIfkK~rs 170 (422)
++|||||||+|++.
T Consensus 158 ~~wVlCrvf~K~~~ 171 (174)
T 3ulx_A 158 DDWVLCRLYNKKNE 171 (174)
T ss_dssp SSEEEEEEEESCC-
T ss_pred CCEEEEEEEEcCCC
Confidence 79999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.4e-52 Score=383.49 Aligned_cols=161 Identities=52% Similarity=0.972 Sum_probs=129.3
Q ss_pred CcccccccccCCCCCCCceECCChHHHHHHHHHHHHhCCCCCcCcceecccCCCCCCCCCC-----CCeeEEeccccccc
Q 047852 1 MDERNENDKLDEILLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPR-----EKEWYFYCPRDRKY 75 (422)
Q Consensus 1 M~e~~~m~k~~~~LPPGFRF~PTDEELV~~YLrpKI~g~pLp~~~I~evDVY~~ePWdLp~-----d~eWYFFtpr~rK~ 75 (422)
|+.++.-......|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+ +++||||+++++|+
T Consensus 4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence 5555443344567999999999999999999999999999999999999999999999997 78999999999999
Q ss_pred CCCCCCcccccCceeeecCCcccEEcCCCCEEEEEEEEEEeeeccCCCCCccCeEEEEEEcCCCCCCCCCccccCCCCCC
Q 047852 76 RNSARPNRVTGAGFWKATGTDRPIYSSEGNKCIGLKKSLVFYKGKAAKGIKTDWMMHEFRLPSLIDSVPPKRFMDKTIPA 155 (422)
Q Consensus 76 ~nG~R~~R~tGgG~WK~tG~~K~I~s~~Gg~vIG~KKtLvFY~Gr~~~g~KT~WvMhEY~L~~~~d~s~p~~~~d~~~~~ 155 (422)
++|.|++|++++|+||++|++++|... +++||+||+|+||+|+++++.||+|+||||+|...... .....
T Consensus 84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~--------~~~~~ 153 (171)
T 1ut7_A 84 PNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR--------NGSTK 153 (171)
T ss_dssp -----CCEEETTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC---------------
T ss_pred CCCCcccccCCCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc--------cCccc
Confidence 999999999999999999999999974 48999999999999999999999999999999864210 11234
Q ss_pred CCcEEEEEEEecCChh
Q 047852 156 NDSWAICRIFKKTNST 171 (422)
Q Consensus 156 ~de~VLCRIfkK~rs~ 171 (422)
.++|||||||+|+++.
T Consensus 154 ~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 154 LDDWVLCRIYKKQSSA 169 (171)
T ss_dssp -CCEEEEEEEECC---
T ss_pred CCCEEEEEEEEcCCCC
Confidence 5799999999998753
No 3
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=26.27 E-value=81 Score=26.29 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHHHhCCCCCcCcceecccCCCCCCCCCC
Q 047852 21 HPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPR 61 (422)
Q Consensus 21 ~PTDEELV~~YLrpKI~g~pLp~~~I~evDVY~~ePWdLp~ 61 (422)
|-|..||+..-...-..|+|||. +.|+-+..|.++|.
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~ 86 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPE 86 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchH
Confidence 57888988877777789999997 67899999999885
No 4
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=15.90 E-value=81 Score=24.96 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCCceECC-ChHHHHHHHHHHHHhCCCCC
Q 047852 15 LPGFRFHP-TDEELVGFYLKRKIQQRPLS 42 (422)
Q Consensus 15 PPGFRF~P-TDEELV~~YLrpKI~g~pLp 42 (422)
|.|+.|.. |++||-. ||.+|+....|.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 56899998 8888887 799999877654
No 5
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=13.09 E-value=1.7e+02 Score=26.00 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHhCCCCCcCcce--ecccCCCCCCC
Q 047852 23 TDEELVGFYLKRKIQQRPLSIELIK--QLDIYKYDPWD 58 (422)
Q Consensus 23 TDEELV~~YLrpKI~g~pLp~~~I~--evDVY~~ePWd 58 (422)
|+.+-|..||+. ...||..+|. +++--+.+|.+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGG
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCc
Confidence 455666678876 4568888775 56667777754
No 6
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=7.67 E-value=1.2e+02 Score=29.00 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=14.4
Q ss_pred CCCCceECCChHHHHHHHH
Q 047852 14 LLPGFRFHPTDEELVGFYL 32 (422)
Q Consensus 14 LPPGFRF~PTDEELV~~YL 32 (422)
+|| |.|.|++++|+.||-
T Consensus 118 ~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 556 568899999999863
No 7
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=7.64 E-value=1.9e+02 Score=23.11 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhCCCCCcCcceecccCC
Q 047852 24 DEELVGFYLKRKIQQRPLSIELIKQLDIYK 53 (422)
Q Consensus 24 DEELV~~YLrpKI~g~pLp~~~I~evDVY~ 53 (422)
+.++ ..||++++.|+|+...-+..+++++
T Consensus 26 ~~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 26 PPDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp CHHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred CccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 3555 4689999999998765444566654
No 8
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=7.54 E-value=1e+02 Score=27.93 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=10.3
Q ss_pred ceecccCCCCCC
Q 047852 46 IKQLDIYKYDPW 57 (422)
Q Consensus 46 I~evDVY~~ePW 57 (422)
+.++|||.+.|.
T Consensus 119 l~dC~IYsY~Pd 130 (164)
T 3nr5_A 119 LAECDIYSYNPD 130 (164)
T ss_dssp GGGCEEEEECCC
T ss_pred ccCCeEEEEcCC
Confidence 468899999998
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=7.45 E-value=1.7e+02 Score=28.09 Aligned_cols=19 Identities=21% Similarity=0.684 Sum_probs=14.6
Q ss_pred CCCCCce---ECCChHHHHHHHH
Q 047852 13 ILLPGFR---FHPTDEELVGFYL 32 (422)
Q Consensus 13 ~LPPGFR---F~PTDEELV~~YL 32 (422)
.+|| |. |.||+++|+.||-
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHH
T ss_pred EcCC-CCccCCCCCHHHHHHHHH
Confidence 3566 54 8999999999764
No 10
>3i9v_7 NADH-quinone oxidoreductase subunit 15; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_7* 2fug_7* 3iam_7* 3ias_7* 3m9s_7*
Probab=7.26 E-value=9.6e+02 Score=20.70 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCCCCCcCcceecc----cCCC-CCCCCCC----------CCeeEEecccccccCCCCCC-ccccc-Cc
Q 047852 26 ELVGFYLKRKIQQRPLSIELIKQLD----IYKY-DPWDLPR----------EKEWYFYCPRDRKYRNSARP-NRVTG-AG 88 (422)
Q Consensus 26 ELV~~YLrpKI~g~pLp~~~I~evD----VY~~-ePWdLp~----------d~eWYFFtpr~rK~~nG~R~-~R~tG-gG 88 (422)
||+. +|+.-+..+.+.. =.++| ||.. -|+|||- .++=||+.-...+...-++. -|.-| --
T Consensus 15 ell~-Wl~eyA~~~g~~F--ekeaDFPDyIYRMeRPydLPTtvMsvsLS~~~geP~l~a~vSprha~lK~islr~~g~h~ 91 (129)
T 3i9v_7 15 ELLS-WMREYAQAKGVRF--EKEADFPDFIYRMERPYDLPTTIMTASLSDGLGEPFLLADVSPRHAKLKRIGLRLPRAHI 91 (129)
T ss_dssp HHHH-HHHHHHHHTTCCE--EEEEECHHHHSCCSSCCCCSCSEEEEEEECSSSCEEEEEEECCSSSSSCCEEEEETTTTE
T ss_pred HHHH-HHHHHHHhcCCce--eecccccHHHHhhcCcccCCceeEEEEeccCCCCeeEEEecCcchhhhcceEEecCCCcc
Confidence 4443 5666665554442 23455 8886 5999997 36777775432211111121 13333 35
Q ss_pred eeeec
Q 047852 89 FWKAT 93 (422)
Q Consensus 89 ~WK~t 93 (422)
.||..
T Consensus 92 hwh~h 96 (129)
T 3i9v_7 92 HLHAH 96 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 89886
Done!