BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047854
(259 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
KGPWT EED+ + EHV G RWS +A+ R GK CR RW N+L P +K+ T +
Sbjct: 27 KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
E+ II + H GN+W+ IA+ LPGRTDN +KN+W
Sbjct: 86 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHW 120
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 46 NRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIK 104
NR+ C+ RW L P L +G T +E+ +IE +G K WS IA++L GR + +
Sbjct: 7 NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCR 66
Query: 105 NYWRTHF 111
W H
Sbjct: 67 ERWHNHL 73
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
KGPWT EED+ + E V G +W+ +A+ R GK CR RW N+L P +K+ T +
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
E+ II E H + GN+W+ IA+ LPGRTDN +KN+W
Sbjct: 66 EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHW 100
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 62 PGLKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHF 111
P L +G T +E+ +IEL +G K W+ IA++L GR + + W H
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL 53
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVAR 41
+K WT EED+++ E +LG RW+ +A+
Sbjct: 58 KKSSWTEEEDRIIFEAHKVLG-NRWAEIAK 86
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
KGPWT EED+ + + V G RWS +A+ R GK CR RW N+L P +K+ T +
Sbjct: 58 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 116
Query: 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
E+ II + H GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 117 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 151
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
K WT EED+ L + V G W +A NR+ C+ RW L P L +G T +
Sbjct: 6 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKE 64
Query: 73 EEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHF 111
E+ +I+L +G K WS IA++L GR + + W H
Sbjct: 65 EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
KGPWT EED+ + + V G RWS +A+ R GK CR RW N+L P +K+ T +
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
E+ II + H GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 97
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 64 LKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHF 111
L +G T +E+ +I+L +G K WS IA++L GR + + W H
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
KGPWT EED+ + + V G RWS +A+ R GK CR RW N+L P +K+ T +
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
E+ II + H GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 63 EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 97
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 64 LKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHF 111
L +G T +E+ +I+L +G K WS IA++L GR + + W H
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
KGP+T ED L+ E+V G W + S NRS K CR RW N+L P + + TP+
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
E+ I + G+KWS IA+ +PGRTDN IKN W
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRW 95
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTP 71
+K +TPEED++L V G W +A + NR+ + CR RW NYL P + T
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 72 QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109
+E+ ++++ +G +W+ IA++ PGRTD IKN W T
Sbjct: 68 EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHF 111
K+ + TP+E+ ++ A G+ W IA P R + ++ W+ +
Sbjct: 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQ 72
K +T EED L + V G W ++ + R+ + CR RW NY+ P L+ +P+
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
E+ ++ + +A +G KW+ I+++L R+DN I+N W
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 3 WGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWV 57
W R PW+PEED LL + G +W+ +++ NRS + R RW+
Sbjct: 43 WNNYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLK-NRSDNNIRNRWM 95
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 64 LKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
+K+ T +E+ II + H GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 44
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 64 LKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107
+K+ T +E+ I+ + H GN+W+ IA+ LPGRTDN IKN+W
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHW 46
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 47.8 bits (112), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
KGPWT EED+ + E V G RWS +A+ R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 64 LKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHF 111
L +G T +E+ +IEL +G K WS IA++L GR + + W H
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 47.4 bits (111), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
KGPWT EED+ L + V G RWS +A+ R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 30.8 bits (68), Expect = 0.71, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 64 LKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHF 111
L +G T +E+ +I+L +G K WS IA++L GR + + W H
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
KGPWT EED+ + + V G RWS +A+ R GK CR RW N+L P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
Score = 31.2 bits (69), Expect = 0.52, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 64 LKRGQLTPQEEGIIIELHALWGNK-WSTIARYLPGRTDNEIKNYWRTHF 111
L +G T +E+ +I+L +G K WS IA++L GR + + W H
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 16 WTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQ 68
W ED++L V G+ +WS +A S +S K C+ RW +L P +K+ +
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLDPSIKKTE 63
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60
K WT EED+ L V G+ W +A S NR+ + C+ RW+ L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARS-AGLNRSGKSCRLRWVNYLRPGL 64
+K WT EE + + V GEG W++++++ +NR+ + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARS-AGLNRSGKSCRLRWVNYLRPGL 64
+K WT EE + + V GEG W++++++ +NR+ + RW R G+
Sbjct: 13 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 66
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARS-AGLNRSGKSCRLRWVNYLRPGL 64
+K WT EE + + V GEG W++++++ +NR+ + RW R G+
Sbjct: 9 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 62
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARS-AGLNRSGKSCRLRWVNYLRPGL 64
+K WT EE + + V GEG W++++++ +NR+ + RW R G+
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARS-AGLNRSGKSCRLRWVNYLRPGL 64
+K WT EE + + V GEG W++++++ +NR+ + RW R G+
Sbjct: 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54
>pdb|2ROH|A Chain A, The Dna Binding Domain Of Rtbp1
Length = 122
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLN---RSGKSCRLRWVNYLR-----PGL 64
+ P+T E +LL E V LG GRW V A N R+ + +W + P
Sbjct: 31 RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQ 90
Query: 65 KRGQLTPQE 73
+RG PQE
Sbjct: 91 RRGAPVPQE 99
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 16 WTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCR 53
W +E+ LL + LG G W+ +A G R+ + CR
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECR 49
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 67 GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWR 108
G+ TP+E + EL GN W+TI L GR+ + +K+ R
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1
Length = 121
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLN---RSGKSCRLRWVNYLR-----PGL 64
+ P++ E + L E V LG GRW V A N R+ + +W + P
Sbjct: 17 RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ 76
Query: 65 KRGQLTPQE-EGIIIELHALWGNK 87
+RG+ PQ+ ++ HA W +
Sbjct: 77 RRGEPVPQDLLDRVLAAHAYWSQQ 100
>pdb|2CKX|A Chain A, Crystal Structure Of Ngtrf1, Double-Stranded Telomeric
Repeat Binding Factor From Nicotiana Tabacum
Length = 83
Score = 28.1 bits (61), Expect = 5.2, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGLN---RSGKSCRLRWVNYLR-----PGLKR 66
P++ E + L E V LG GRW V A N R+ + +W + P +R
Sbjct: 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61
Query: 67 GQLTPQE-EGIIIELHALWGNK 87
G+ PQ+ ++ HA W +
Sbjct: 62 GEPVPQDLLDRVLAAHAYWSQQ 83
>pdb|2QHB|A Chain A, Crystal Structure Of Ngtrf Complexed With Telomeric Dna
pdb|2QHB|B Chain B, Crystal Structure Of Ngtrf Complexed With Telomeric Dna
Length = 86
Score = 28.1 bits (61), Expect = 5.3, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 9/79 (11%)
Query: 15 PWTPEEDKLLTEHVNLLGEGRWSSVARSAGLN---RSGKSCRLRWVNYLR-----PGLKR 66
P++ E + L E V LG GRW V A N R+ + +W + P +R
Sbjct: 6 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 65
Query: 67 GQLTPQE-EGIIIELHALW 84
G+ PQ+ ++ HA W
Sbjct: 66 GEPVPQDLLDRVLAAHAYW 84
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 27.7 bits (60), Expect = 6.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
K WT EED+ L + V G W +A NR+ C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 27.7 bits (60), Expect = 6.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRP 62
K WT EED+ L + V G W +A NR+ C+ RW L P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,808,005
Number of Sequences: 62578
Number of extensions: 298508
Number of successful extensions: 774
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 56
length of query: 259
length of database: 14,973,337
effective HSP length: 97
effective length of query: 162
effective length of database: 8,903,271
effective search space: 1442329902
effective search space used: 1442329902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)