Query 047854
Match_columns 259
No_of_seqs 188 out of 1450
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047854.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047854hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 2.1E-35 7.3E-40 239.6 11.5 113 1-114 15-127 (128)
2 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.1E-34 1.1E-38 225.0 11.2 104 10-114 1-104 (105)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 5E-34 1.7E-38 225.1 10.0 103 13-116 1-103 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 1.2E-33 4E-38 230.5 10.9 107 12-119 1-107 (131)
5 3osg_A MYB21; transcription-DN 100.0 3.7E-33 1.3E-37 226.3 11.3 109 6-116 4-112 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 4.3E-33 1.5E-37 233.5 10.3 112 2-114 47-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.4E-32 4.7E-37 230.5 9.1 124 10-134 3-127 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 7.1E-24 2.4E-28 171.6 9.0 96 39-135 1-97 (128)
9 2dim_A Cell division cycle 5-l 99.9 1.3E-22 4.4E-27 148.4 4.8 67 7-74 3-69 (70)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 3.6E-19 1.2E-23 157.5 7.8 106 8-114 3-200 (246)
11 2d9a_A B-MYB, MYB-related prot 99.7 3.3E-18 1.1E-22 121.3 5.2 57 8-65 3-59 (60)
12 2llk_A Cyclin-D-binding MYB-li 99.7 4.9E-18 1.7E-22 125.6 5.7 59 53-112 10-68 (73)
13 2juh_A Telomere binding protei 99.7 4.9E-18 1.7E-22 136.8 4.9 83 7-90 11-103 (121)
14 1gvd_A MYB proto-oncogene prot 99.7 6.7E-18 2.3E-22 116.4 4.4 52 11-63 1-52 (52)
15 1guu_A C-MYB, MYB proto-oncoge 99.7 1E-17 3.5E-22 115.4 4.0 52 11-63 1-52 (52)
16 1ity_A TRF1; helix-turn-helix, 99.7 2.4E-17 8.1E-22 120.1 5.3 66 5-70 2-68 (69)
17 2dim_A Cell division cycle 5-l 99.7 2E-17 7E-22 120.7 4.3 64 61-124 4-68 (70)
18 2roh_A RTBP1, telomere binding 99.7 5.7E-17 2E-21 130.7 6.8 79 8-87 26-114 (122)
19 2din_A Cell division cycle 5-l 99.7 4.5E-17 1.6E-21 117.5 5.0 58 59-117 2-59 (66)
20 2din_A Cell division cycle 5-l 99.7 1.8E-17 6.3E-22 119.6 2.5 60 6-68 2-61 (66)
21 2d9a_A B-MYB, MYB-related prot 99.7 1.7E-16 5.9E-21 112.4 7.2 56 61-116 3-59 (60)
22 1x41_A Transcriptional adaptor 99.6 1.1E-16 3.7E-21 113.7 4.8 55 8-63 3-57 (60)
23 2cu7_A KIAA1915 protein; nucle 99.6 2.2E-16 7.4E-21 116.0 6.5 58 60-117 3-60 (72)
24 1guu_A C-MYB, MYB proto-oncoge 99.6 4.8E-16 1.6E-20 106.9 6.4 50 64-113 1-51 (52)
25 3sjm_A Telomeric repeat-bindin 99.6 2.5E-16 8.5E-21 113.5 4.1 58 8-65 6-64 (64)
26 1gvd_A MYB proto-oncogene prot 99.6 8.9E-16 3E-20 105.7 6.5 50 64-113 1-51 (52)
27 1gv2_A C-MYB, MYB proto-oncoge 99.6 2E-15 6.8E-20 117.7 8.5 73 63-135 1-74 (105)
28 2llk_A Cyclin-D-binding MYB-li 99.6 5.2E-16 1.8E-20 114.7 4.8 60 2-65 12-71 (73)
29 3osg_A MYB21; transcription-DN 99.6 2.4E-15 8.2E-20 121.3 8.8 75 61-135 6-80 (126)
30 3zqc_A MYB3; transcription-DNA 99.6 2.3E-16 8E-21 128.0 2.4 88 2-95 43-130 (131)
31 1x41_A Transcriptional adaptor 99.6 2.1E-15 7.2E-20 107.0 6.4 54 61-114 3-57 (60)
32 1ity_A TRF1; helix-turn-helix, 99.6 3.1E-15 1.1E-19 108.8 7.3 59 60-118 4-65 (69)
33 2yum_A ZZZ3 protein, zinc fing 99.6 6.1E-16 2.1E-20 114.2 3.5 60 8-68 3-67 (75)
34 2cu7_A KIAA1915 protein; nucle 99.6 7.3E-16 2.5E-20 113.1 3.7 59 6-66 2-60 (72)
35 1w0t_A Telomeric repeat bindin 99.6 4E-15 1.4E-19 102.9 6.7 49 65-113 1-52 (53)
36 2elk_A SPCC24B10.08C protein; 99.6 1.9E-15 6.5E-20 106.7 4.8 53 8-60 4-56 (58)
37 1w0t_A Telomeric repeat bindin 99.6 1.8E-15 6.1E-20 104.7 4.1 50 12-61 1-51 (53)
38 2k9n_A MYB24; R2R3 domain, DNA 99.6 8.4E-15 2.9E-19 114.9 8.1 69 66-134 1-70 (107)
39 2yum_A ZZZ3 protein, zinc fing 99.5 6.3E-15 2.2E-19 108.7 5.5 56 61-116 3-64 (75)
40 3sjm_A Telomeric repeat-bindin 99.5 1.3E-14 4.4E-19 104.5 6.9 52 64-115 9-63 (64)
41 2elk_A SPCC24B10.08C protein; 99.5 1.5E-14 5E-19 102.1 6.5 50 62-111 5-56 (58)
42 2ltp_A Nuclear receptor corepr 99.2 3.4E-15 1.2E-19 114.1 0.0 56 59-114 9-64 (89)
43 2ckx_A NGTRF1, telomere bindin 99.4 1E-13 3.6E-18 104.7 6.4 69 14-83 1-79 (83)
44 2aje_A Telomere repeat-binding 99.4 1.4E-13 4.8E-18 108.3 5.8 78 7-85 7-94 (105)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.4 4E-13 1.4E-17 99.2 5.6 52 62-113 14-69 (73)
46 2ltp_A Nuclear receptor corepr 99.1 3.9E-14 1.3E-18 108.2 0.0 54 6-61 9-62 (89)
47 2yus_A SWI/SNF-related matrix- 99.4 3E-13 1E-17 101.2 4.7 51 7-59 12-62 (79)
48 2yus_A SWI/SNF-related matrix- 99.4 5.8E-13 2E-17 99.7 5.5 48 63-110 15-62 (79)
49 2juh_A Telomere binding protei 99.4 2.1E-12 7.2E-17 103.9 8.6 71 60-130 11-92 (121)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.3 4.9E-13 1.7E-17 98.7 3.4 54 7-61 12-68 (73)
51 1ign_A Protein (RAP1); RAP1,ye 99.3 1.9E-12 6.4E-17 114.6 7.1 73 62-134 4-111 (246)
52 1x58_A Hypothetical protein 49 99.3 4E-12 1.4E-16 90.7 6.3 51 64-114 6-59 (62)
53 2ckx_A NGTRF1, telomere bindin 99.3 4.3E-12 1.5E-16 95.8 6.3 47 67-113 1-52 (83)
54 2aje_A Telomere repeat-binding 99.2 1.1E-11 3.7E-16 97.5 6.5 52 62-113 9-65 (105)
55 2roh_A RTBP1, telomere binding 99.2 1.5E-11 5.2E-16 99.0 7.0 63 62-124 27-99 (122)
56 2cjj_A Radialis; plant develop 99.2 2.8E-11 9.7E-16 93.2 5.8 49 65-113 7-59 (93)
57 2cjj_A Radialis; plant develop 99.1 2.3E-11 7.9E-16 93.7 3.1 48 12-60 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.0 4.4E-10 1.5E-14 79.8 6.6 48 65-112 11-58 (61)
59 2eqr_A N-COR1, N-COR, nuclear 98.9 1E-09 3.5E-14 77.9 4.6 50 8-59 7-56 (61)
60 3hm5_A DNA methyltransferase 1 98.9 2.3E-09 7.7E-14 82.4 6.6 61 50-114 18-83 (93)
61 1x58_A Hypothetical protein 49 98.9 1.2E-09 4.2E-14 77.8 3.5 49 11-61 6-57 (62)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.8 5E-09 1.7E-13 76.9 5.6 50 63-113 5-58 (72)
63 2iw5_B Protein corest, REST co 98.8 9.4E-09 3.2E-13 90.3 6.5 49 65-113 132-180 (235)
64 2xag_B REST corepressor 1; ami 98.7 1.2E-08 4E-13 98.6 5.8 47 67-113 381-427 (482)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.7 8.8E-09 3E-13 75.6 3.7 52 9-62 4-58 (72)
66 1wgx_A KIAA1903 protein; MYB D 98.6 2E-08 6.7E-13 74.0 4.2 50 12-62 7-59 (73)
67 1wgx_A KIAA1903 protein; MYB D 98.6 5.2E-08 1.8E-12 71.7 5.3 52 66-117 8-63 (73)
68 1fex_A TRF2-interacting telome 98.6 3E-08 1E-12 70.0 3.0 48 13-61 2-58 (59)
69 2iw5_B Protein corest, REST co 98.4 1.1E-07 3.8E-12 83.6 3.7 48 12-61 132-179 (235)
70 1fex_A TRF2-interacting telome 98.4 3.1E-07 1E-11 64.8 5.0 47 66-112 2-58 (59)
71 1ofc_X ISWI protein; nuclear p 98.3 2.3E-06 7.7E-11 78.5 9.4 99 14-113 111-275 (304)
72 4eef_G F-HB80.4, designed hema 98.3 1.6E-07 5.4E-12 68.9 0.9 44 13-57 20-66 (74)
73 2yqk_A Arginine-glutamic acid 98.3 2.6E-06 8.8E-11 60.6 7.1 49 61-109 4-53 (63)
74 1ug2_A 2610100B20RIK gene prod 98.1 2.6E-06 8.9E-11 64.8 5.4 46 68-113 35-83 (95)
75 2yqk_A Arginine-glutamic acid 98.1 3.5E-06 1.2E-10 59.9 4.4 50 7-58 3-53 (63)
76 2lr8_A CAsp8-associated protei 97.3 6.4E-07 2.2E-11 64.7 0.0 45 68-113 16-63 (70)
77 4eef_G F-HB80.4, designed hema 98.0 1.2E-06 4E-11 64.3 0.9 42 66-107 20-65 (74)
78 3hm5_A DNA methyltransferase 1 97.9 3.2E-06 1.1E-10 64.8 1.4 46 14-60 31-80 (93)
79 2crg_A Metastasis associated p 97.9 2.7E-05 9.1E-10 56.5 6.1 43 66-108 8-51 (70)
80 4a69_C Nuclear receptor corepr 97.8 3.1E-05 1.1E-09 59.3 6.2 44 66-109 43-86 (94)
81 4iej_A DNA methyltransferase 1 97.8 4.6E-05 1.6E-09 58.3 6.7 57 54-114 22-83 (93)
82 2xag_B REST corepressor 1; ami 97.6 3E-05 1E-09 74.9 3.8 46 12-59 379-424 (482)
83 2crg_A Metastasis associated p 97.6 4.1E-05 1.4E-09 55.5 3.4 45 12-58 7-52 (70)
84 4a69_C Nuclear receptor corepr 97.5 5.8E-05 2E-09 57.8 3.2 43 14-58 44-86 (94)
85 1ug2_A 2610100B20RIK gene prod 97.2 0.00037 1.3E-08 52.9 4.3 51 8-59 28-80 (95)
86 2ebi_A DNA binding protein GT- 97.1 0.0001 3.6E-09 54.9 1.0 49 12-60 3-63 (86)
87 2y9y_A Imitation switch protei 97.1 0.002 6.7E-08 60.5 9.4 99 14-113 124-291 (374)
88 2ebi_A DNA binding protein GT- 97.1 0.00032 1.1E-08 52.2 3.1 48 66-113 4-65 (86)
89 4b4c_A Chromodomain-helicase-D 97.0 0.0012 4E-08 56.5 6.2 41 11-52 5-49 (211)
90 2lr8_A CAsp8-associated protei 96.0 0.00014 4.8E-09 52.4 0.0 48 12-61 13-62 (70)
91 4iej_A DNA methyltransferase 1 96.0 0.0051 1.7E-07 46.9 3.7 48 12-60 29-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 95.5 0.033 1.1E-06 39.6 6.0 49 64-112 5-58 (64)
93 1ofc_X ISWI protein; nuclear p 93.5 0.33 1.1E-05 44.2 9.2 49 66-114 110-159 (304)
94 4b4c_A Chromodomain-helicase-D 92.2 0.19 6.5E-06 42.5 5.5 49 65-113 6-59 (211)
95 2xb0_X Chromo domain-containin 89.8 0.21 7.1E-06 44.8 3.5 28 14-41 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 85.9 1.1 3.8E-05 31.6 4.5 50 9-58 3-55 (64)
97 2xb0_X Chromo domain-containin 83.2 2.1 7.3E-05 38.2 6.3 49 66-114 3-56 (270)
98 2o8x_A Probable RNA polymerase 65.0 9.2 0.00032 25.4 4.4 41 72-113 18-58 (70)
99 2p7v_B Sigma-70, RNA polymeras 61.8 12 0.00041 25.2 4.5 43 72-115 8-54 (68)
100 1ku3_A Sigma factor SIGA; heli 61.2 12 0.0004 25.6 4.5 42 72-114 13-58 (73)
101 2rq5_A Protein jumonji; develo 56.7 7.6 0.00026 30.4 3.1 45 35-82 65-113 (121)
102 2y9y_A Imitation switch protei 55.1 38 0.0013 31.5 8.0 48 66-113 123-172 (374)
103 2li6_A SWI/SNF chromatin-remod 53.5 7.3 0.00025 30.0 2.4 39 23-62 53-98 (116)
104 2li6_A SWI/SNF chromatin-remod 51.9 12 0.00042 28.7 3.5 37 77-113 54-98 (116)
105 2p1m_A SKP1-like protein 1A; F 50.2 8.5 0.00029 31.1 2.5 36 36-79 118-153 (160)
106 2jrz_A Histone demethylase jar 48.5 27 0.00093 26.7 5.0 38 76-113 44-93 (117)
107 3hug_A RNA polymerase sigma fa 48.2 23 0.0008 25.2 4.4 41 72-113 40-80 (92)
108 2rq5_A Protein jumonji; develo 47.9 62 0.0021 25.1 7.1 38 77-114 47-97 (121)
109 2lm1_A Lysine-specific demethy 47.0 31 0.0011 25.7 5.1 38 76-113 48-97 (107)
110 1ig6_A MRF-2, modulator recogn 44.2 14 0.00047 27.9 2.6 40 23-62 37-87 (107)
111 1x3u_A Transcriptional regulat 44.1 52 0.0018 22.1 5.6 45 69-116 17-61 (79)
112 1kkx_A Transcription regulator 42.9 18 0.00061 28.2 3.2 37 77-113 53-97 (123)
113 2eqy_A RBP2 like, jumonji, at 42.3 39 0.0013 26.1 5.1 38 76-113 46-95 (122)
114 1tty_A Sigma-A, RNA polymerase 42.2 36 0.0012 24.0 4.6 42 73-115 22-67 (87)
115 2cxy_A BAF250B subunit, HBAF25 41.2 40 0.0014 26.1 5.0 38 76-113 55-104 (125)
116 2jrz_A Histone demethylase jar 41.1 12 0.00039 28.9 1.8 40 23-62 44-93 (117)
117 1c20_A DEAD ringer protein; DN 40.9 12 0.0004 29.3 1.8 40 23-62 56-106 (128)
118 3cz6_A DNA-binding protein RAP 40.2 24 0.00081 29.3 3.6 29 9-40 110-146 (168)
119 2ast_A S-phase kinase-associat 39.0 13 0.00045 29.8 1.9 36 36-79 119-154 (159)
120 1or7_A Sigma-24, RNA polymeras 38.2 46 0.0016 26.0 5.1 30 83-113 154-183 (194)
121 3v7d_A Suppressor of kinetocho 38.2 13 0.00046 30.3 1.9 35 36-78 126-160 (169)
122 1c20_A DEAD ringer protein; DN 36.9 50 0.0017 25.5 5.0 39 75-113 55-106 (128)
123 1je8_A Nitrate/nitrite respons 36.0 60 0.002 22.6 4.9 47 68-117 21-67 (82)
124 2jxj_A Histone demethylase jar 35.4 25 0.00086 25.7 2.8 37 77-113 41-89 (96)
125 2yqf_A Ankyrin-1; death domain 35.4 58 0.002 24.4 5.0 35 70-105 14-48 (111)
126 3c57_A Two component transcrip 35.4 51 0.0017 23.7 4.5 45 68-115 27-71 (95)
127 2cxy_A BAF250B subunit, HBAF25 35.1 16 0.00056 28.3 1.8 40 23-62 55-104 (125)
128 1xsv_A Hypothetical UPF0122 pr 35.0 63 0.0022 24.2 5.2 41 73-114 29-69 (113)
129 1fse_A GERE; helix-turn-helix 34.7 63 0.0022 21.3 4.7 47 67-116 10-56 (74)
130 2eqy_A RBP2 like, jumonji, at 33.1 21 0.00071 27.7 2.1 40 23-62 46-95 (122)
131 2kk0_A AT-rich interactive dom 32.8 63 0.0022 25.7 5.0 38 76-113 68-118 (145)
132 2jpc_A SSRB; DNA binding prote 32.8 86 0.0029 19.9 5.0 41 74-116 3-43 (61)
133 3i4p_A Transcriptional regulat 32.8 48 0.0017 26.1 4.4 41 72-113 3-44 (162)
134 3ulq_B Transcriptional regulat 32.6 81 0.0028 22.6 5.2 49 65-116 26-74 (90)
135 3cz6_A DNA-binding protein RAP 31.7 34 0.0012 28.3 3.2 17 62-78 110-126 (168)
136 2kk0_A AT-rich interactive dom 31.5 46 0.0016 26.5 4.0 40 23-62 68-118 (145)
137 1rp3_A RNA polymerase sigma fa 30.9 68 0.0023 25.8 5.1 38 75-113 193-230 (239)
138 2of5_H Leucine-rich repeat and 30.9 59 0.002 24.7 4.4 31 74-105 13-43 (118)
139 2o71_A Death domain-containing 30.3 68 0.0023 24.5 4.6 36 66-105 19-54 (115)
140 3mzy_A RNA polymerase sigma-H 29.8 59 0.002 24.4 4.3 30 83-113 122-151 (164)
141 2of5_A Death domain-containing 29.1 64 0.0022 24.6 4.3 39 63-105 16-54 (114)
142 3e7l_A Transcriptional regulat 28.5 99 0.0034 20.4 4.8 37 71-108 18-54 (63)
143 2k27_A Paired box protein PAX- 27.3 2.1E+02 0.0071 21.9 9.5 93 14-111 24-136 (159)
144 1u78_A TC3 transposase, transp 26.9 1.9E+02 0.0064 21.2 10.4 90 13-108 4-101 (141)
145 2rnj_A Response regulator prot 26.8 66 0.0023 22.7 3.8 45 69-116 30-74 (91)
146 1tc3_C Protein (TC3 transposas 26.0 1E+02 0.0035 17.9 5.2 38 68-107 5-42 (51)
147 1p4w_A RCSB; solution structur 25.6 1.7E+02 0.0058 21.3 6.1 48 66-116 32-79 (99)
148 1ntc_A Protein (nitrogen regul 25.3 1.1E+02 0.0038 21.8 4.8 36 71-107 50-85 (91)
149 2q1z_A RPOE, ECF SIGE; ECF sig 25.2 31 0.0011 26.9 1.9 30 83-113 149-178 (184)
150 1s7o_A Hypothetical UPF0122 pr 23.8 1.1E+02 0.0037 23.0 4.7 40 73-113 26-65 (113)
151 2dbb_A Putative HTH-type trans 22.8 1.4E+02 0.0047 22.8 5.3 41 72-113 9-50 (151)
152 2e1c_A Putative HTH-type trans 21.8 1.1E+02 0.0038 24.4 4.7 43 71-114 26-69 (171)
153 3i4p_A Transcriptional regulat 21.0 42 0.0014 26.5 1.9 43 19-63 3-45 (162)
154 1wxp_A THO complex subunit 1; 20.8 1E+02 0.0036 22.9 4.1 31 74-105 18-48 (110)
155 1k78_A Paired box protein PAX5 20.4 2.8E+02 0.0094 20.8 9.3 79 13-95 30-118 (149)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=2.1e-35 Score=239.56 Aligned_cols=113 Identities=42% Similarity=0.836 Sum_probs=103.3
Q ss_pred CCCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHH
Q 047854 1 MGWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIEL 80 (259)
Q Consensus 1 ~rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~ 80 (259)
.||.++++|++++|+||+|||++|+++|..||..+|..||..|+ |||+.||++||.++|+|.+++++||+|||.+|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 38999999999999999999999999999999878999999999 99999999999999999999999999999999999
Q ss_pred HHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 81 HALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 81 v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
+.+||++|+.||++|||||+++|++||+.++++.
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998764
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=3.1e-34 Score=224.98 Aligned_cols=104 Identities=44% Similarity=0.833 Sum_probs=99.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHH
Q 047854 10 GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWS 89 (259)
Q Consensus 10 ~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~ 89 (259)
++++|+||+|||++|+++|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999988999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 90 TIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 90 ~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
.||++|||||+++|++||+.++++.
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999998764
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=5e-34 Score=225.13 Aligned_cols=103 Identities=31% Similarity=0.614 Sum_probs=99.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHH
Q 047854 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIA 92 (259)
Q Consensus 13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia 92 (259)
||+||+|||++|+++|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhcccc
Q 047854 93 RYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 93 ~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
++|||||+++|++||+.++++..+
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999999887543
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=1.2e-33 Score=230.47 Aligned_cols=107 Identities=41% Similarity=0.707 Sum_probs=102.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHH
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTI 91 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~I 91 (259)
.||+||+|||++|+.+|..||..+|..||..|+ |||+.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 379999999999999999999889999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHhhhccccchh
Q 047854 92 ARYLPGRTDNEIKNYWRTHFKKEKSSQK 119 (259)
Q Consensus 92 a~~l~gRT~~qcknrw~~~lkk~~~~~~ 119 (259)
|++|||||+++|++||++++++......
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~ 107 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNS 107 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999998765543
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=3.7e-33 Score=226.25 Aligned_cols=109 Identities=35% Similarity=0.675 Sum_probs=103.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcC
Q 047854 6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWG 85 (259)
Q Consensus 6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G 85 (259)
...+..++|+||+|||++|+++|..||. +|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++.+||
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G 81 (126)
T 3osg_A 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG 81 (126)
T ss_dssp BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence 3467899999999999999999999999 9999999999 9999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 86 NKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 86 ~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
.+|+.||++|||||+++|++||..++++...
T Consensus 82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 82 RQWAIIAKFFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999887543
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=4.3e-33 Score=233.51 Aligned_cols=112 Identities=42% Similarity=0.807 Sum_probs=108.5
Q ss_pred CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHH
Q 047854 2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELH 81 (259)
Q Consensus 2 rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v 81 (259)
||.++++|++++|+||+|||++|+.+|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|++++
T Consensus 47 Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~ 125 (159)
T 1h89_C 47 RWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAH 125 (159)
T ss_dssp HHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHH
T ss_pred HHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHH
Confidence 6899999999999999999999999999999878999999998 999999999999999999999999999999999999
Q ss_pred HHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 82 ALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 82 ~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
.+||++|+.||++|||||+++|++||+.++++.
T Consensus 126 ~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 126 KRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998864
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.4e-32 Score=230.47 Aligned_cols=124 Identities=29% Similarity=0.559 Sum_probs=80.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCC-CH
Q 047854 10 GWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGN-KW 88 (259)
Q Consensus 10 ~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W 88 (259)
.+++++||+|||++|+++|..||..+|..||..|+ +||+.||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 46789999999999999999999889999999999 99999999999999999999999999999999999999996 69
Q ss_pred HHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 047854 89 STIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQ 134 (259)
Q Consensus 89 ~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q 134 (259)
+.||.+|||||+.||++||.+++.+...+.+|+.+|+.++.+...+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~ 127 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 127 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888777654
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.90 E-value=7.1e-24 Score=171.64 Aligned_cols=96 Identities=26% Similarity=0.539 Sum_probs=70.5
Q ss_pred hhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854 39 VARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKEKSS 117 (259)
Q Consensus 39 IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~ 117 (259)
||+.|+ |||+.||++||.++|+|.+++++||+|||.+|+++|.+||. +|..||.+|||||+.||++||.+++.+...+
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence 789998 99999999999999999999999999999999999999996 6999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 047854 118 QKQEKRKALLLKQKQQQQ 135 (259)
Q Consensus 118 ~~~~k~e~~~l~~~~~q~ 135 (259)
++|+.+|+.++...+.+.
T Consensus 80 ~~WT~eEd~~L~~~~~~~ 97 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRL 97 (128)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999998887776553
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-22 Score=148.44 Aligned_cols=67 Identities=27% Similarity=0.613 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhH
Q 047854 7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEE 74 (259)
Q Consensus 7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED 74 (259)
..|.+++|+||+|||++|+++|..||..+|..||..|+ +||++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 47899999999999999999999999779999999999 99999999999999999999999999998
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.77 E-value=3.6e-19 Score=157.48 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=92.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhcccCCCccccchhhhhhccCCCc-----------------
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGEGR-----WSSVARSAGLNRSGKSCRLRWVNYLRPGLK----------------- 65 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~-----W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~----------------- 65 (259)
.+.+++++||+|||+.|+++|.++|..+ |..||+.|+ |||++|||+||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3567899999999999999999998743 999999999 99999999999999999886
Q ss_pred ------------CCCCCHHhHHHHHHHHHH-c--------------------------------CC--------------
Q 047854 66 ------------RGQLTPQEEGIIIELHAL-W--------------------------------GN-------------- 86 (259)
Q Consensus 66 ------------k~~WT~eED~~Ll~~v~~-~--------------------------------G~-------------- 86 (259)
+..||.+||-.|...+.+ | +.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998877 1 11
Q ss_pred -----------CHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 87 -----------KWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 87 -----------~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
.|..||+.+|+||.+++|+||+..++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 5999999999999999999999998764
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.3e-18 Score=121.28 Aligned_cols=57 Identities=30% Similarity=0.524 Sum_probs=54.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCc
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLK 65 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~ 65 (259)
+|.+++++||+|||++|+++|..||..+|..||+.|+ +||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 6899999999999999999999999779999999999 99999999999999999875
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=125.62 Aligned_cols=59 Identities=27% Similarity=0.377 Sum_probs=47.9
Q ss_pred chhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854 53 RLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK 112 (259)
Q Consensus 53 r~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lk 112 (259)
--||.++|+|.+++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 9999999999987544
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.71 E-value=4.9e-18 Score=136.75 Aligned_cols=83 Identities=25% Similarity=0.474 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----ccCCCccccchhhhhhcc-----CCCcCC-CCCHHhHHH
Q 047854 7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSA----GLNRSGKSCRLRWVNYLR-----PGLKRG-QLTPQEEGI 76 (259)
Q Consensus 7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l----~~gRt~~Qcr~Rw~~~L~-----p~l~k~-~WT~eED~~ 76 (259)
+.+..++++||+|||+.|+++|.+||.++|..|++.+ + +||..+|++||.+++. |.++++ +|+++|+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 5678899999999999999999999999999999985 6 9999999999999998 999999 999999999
Q ss_pred HHHHHHHcCCCHHH
Q 047854 77 IIELHALWGNKWST 90 (259)
Q Consensus 77 Ll~~v~~~G~~W~~ 90 (259)
|++++..+|++|++
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.70 E-value=6.7e-18 Score=116.37 Aligned_cols=52 Identities=48% Similarity=0.855 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854 11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG 63 (259)
Q Consensus 11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~ 63 (259)
+++|+||+|||++|+++|..||..+|..||..|+ |||+.||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999878999999998 999999999999999984
No 15
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=1e-17 Score=115.37 Aligned_cols=52 Identities=35% Similarity=0.629 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854 11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG 63 (259)
Q Consensus 11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~ 63 (259)
+++++||+|||++|+++|..||..+|..||+.|+ +||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5789999999999999999999989999999999 999999999999999984
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=2.4e-17 Score=120.12 Aligned_cols=66 Identities=26% Similarity=0.413 Sum_probs=60.0
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccc-CCCccccchhhhhhccCCCcCCCCC
Q 047854 5 ATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLRPGLKRGQLT 70 (259)
Q Consensus 5 ~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~-gRt~~Qcr~Rw~~~L~p~l~k~~WT 70 (259)
+..++..++++||+|||++|+.+|..||.++|..||..|+. +||+.||++||.++|+|.+.++..+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 34678899999999999999999999998799999999975 8999999999999999999988764
No 17
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2e-17 Score=120.70 Aligned_cols=64 Identities=20% Similarity=0.316 Sum_probs=60.1
Q ss_pred cCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHH
Q 047854 61 RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRK 124 (259)
Q Consensus 61 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e 124 (259)
.|.+++++||+|||.+|+++|.+|| ++|..||.+|++||+.||++||.++|++.+++++|+.+|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 5678999999999999999999999 799999999999999999999999999999888888655
No 18
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=5.7e-17 Score=130.70 Aligned_cols=79 Identities=32% Similarity=0.529 Sum_probs=73.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----ccCCCccccchhhhhhc-----cCCCcCCCCCHHh-HHHH
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSA----GLNRSGKSCRLRWVNYL-----RPGLKRGQLTPQE-EGII 77 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l----~~gRt~~Qcr~Rw~~~L-----~p~l~k~~WT~eE-D~~L 77 (259)
....++++||+|||+.|+++|.+||.++|..|++.+ + +||..+|++||.+++ +|.++++.|+++| +.+|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 456688999999999999999999999999999974 5 999999999999999 8999999999999 8999
Q ss_pred HHHHHHcCCC
Q 047854 78 IELHALWGNK 87 (259)
Q Consensus 78 l~~v~~~G~~ 87 (259)
++++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.5e-17 Score=117.54 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=54.7
Q ss_pred hccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854 59 YLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSS 117 (259)
Q Consensus 59 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~ 117 (259)
+|+|.+++++||+|||.+|++++.+||.+|..||+ |+|||++||++||..++++..++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcC
Confidence 69999999999999999999999999999999999 88999999999999999986543
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-17 Score=119.61 Aligned_cols=60 Identities=20% Similarity=0.403 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCC
Q 047854 6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQ 68 (259)
Q Consensus 6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~ 68 (259)
+|+|.+++++||+|||++|+++|..||. +|..||+ ++ |||+.||++||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 6899999999999999999999999999 9999999 87 89999999999999999776653
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.7e-16 Score=112.36 Aligned_cols=56 Identities=21% Similarity=0.376 Sum_probs=52.5
Q ss_pred cCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 61 RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 61 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
+|.+++++||+|||.+|+++|.+|| ++|+.||++|+|||+.||++||+++|++..+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5788999999999999999999999 5999999999999999999999999998653
No 22
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=113.68 Aligned_cols=55 Identities=24% Similarity=0.453 Sum_probs=52.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG 63 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~ 63 (259)
.+.+++++||+|||++|+++|..||..+|..||+.|+ +||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 5789999999999999999999999779999999999 999999999999999875
No 23
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.64 E-value=2.2e-16 Score=115.98 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=54.3
Q ss_pred ccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854 60 LRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSS 117 (259)
Q Consensus 60 L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~ 117 (259)
++|.+++++||+|||.+|++++.+||.+|..||++|||||++|||+||+.++++....
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999885543
No 24
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.62 E-value=4.8e-16 Score=106.95 Aligned_cols=50 Identities=30% Similarity=0.576 Sum_probs=46.6
Q ss_pred CcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 64 LKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 64 l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
+++++||+|||.+|+++|.+||. +|+.||++|+|||+.||++||.++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 899999999999999999999999876
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.61 E-value=2.5e-16 Score=113.54 Aligned_cols=58 Identities=28% Similarity=0.544 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc-cCCCccccchhhhhhccCCCc
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG-LNRSGKSCRLRWVNYLRPGLK 65 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~-~gRt~~Qcr~Rw~~~L~p~l~ 65 (259)
....+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 6 TNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 3446899999999999999999999889999999854 389999999999999998763
No 26
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=8.9e-16 Score=105.67 Aligned_cols=50 Identities=32% Similarity=0.675 Sum_probs=47.4
Q ss_pred CcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 64 LKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 64 l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
+++++||+|||.+|+++|.+||. +|+.||++|+|||+.||++||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999997 699999999999999999999999876
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.60 E-value=2e-15 Score=117.71 Aligned_cols=73 Identities=25% Similarity=0.498 Sum_probs=67.4
Q ss_pred CCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 047854 63 GLKRGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQ 135 (259)
Q Consensus 63 ~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q~ 135 (259)
.+++++||+|||.+|+++|.+||. +|..||.+|||||+.||+.||.+++.+...+++|+.+|+.++...+.+.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~ 74 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL 74 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999997 6999999999999999999999999999999999999998888776553
No 28
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.60 E-value=5.2e-16 Score=114.73 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=48.0
Q ss_pred CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCc
Q 047854 2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLK 65 (259)
Q Consensus 2 rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~ 65 (259)
||.++++|++++|+||+|||++|+++|..||. .|..||+.| |||+.||++||.. |.....
T Consensus 12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp -------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred ceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 78999999999999999999999999999999 699999999 8999999999984 544433
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.59 E-value=2.4e-15 Score=121.34 Aligned_cols=75 Identities=24% Similarity=0.413 Sum_probs=69.3
Q ss_pred cCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 047854 61 RPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQQ 135 (259)
Q Consensus 61 ~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q~ 135 (259)
.+..++++||+|||++|+++|.+||.+|..||..|+|||+.||+.||.+++.+...+++|+.+|+.++...+.+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~ 80 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEY 80 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999999999999988877654
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.59 E-value=2.3e-16 Score=128.03 Aligned_cols=88 Identities=20% Similarity=0.355 Sum_probs=67.5
Q ss_pred CCccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHHHH
Q 047854 2 GWGATTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIELH 81 (259)
Q Consensus 2 rW~~~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v 81 (259)
||.++|+|.+++|+||+|||++|+.+|..||. .|..||+.|+ |||..||+.||.++|++.+..++|+.+- +...
T Consensus 43 Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~ 116 (131)
T 3zqc_A 43 RWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPD 116 (131)
T ss_dssp HHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCC
T ss_pred HHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCch
Confidence 68899999999999999999999999999998 8999999999 9999999999999999999999888763 1111
Q ss_pred HHcCCCHHHHHhhC
Q 047854 82 ALWGNKWSTIARYL 95 (259)
Q Consensus 82 ~~~G~~W~~Ia~~l 95 (259)
.....+|+.|++.+
T Consensus 117 ~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 117 RSKKRKAADVPKKL 130 (131)
T ss_dssp CC------------
T ss_pred hhhhhhhhhcchhc
Confidence 22245588777765
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2.1e-15 Score=107.00 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=50.4
Q ss_pred cCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 61 RPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 61 ~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
.|.+.+++||+|||.+|+++|.+|| ++|..||++|++||+.||++||.+++.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4678899999999999999999999 79999999999999999999999998753
No 32
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=3.1e-15 Score=108.82 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=53.9
Q ss_pred ccCCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhccccch
Q 047854 60 LRPGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLP--GRTDNEIKNYWRTHFKKEKSSQ 118 (259)
Q Consensus 60 L~p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~qcknrw~~~lkk~~~~~ 118 (259)
..|..++++||+|||.+|+++|.+|| ++|+.||.+|+ |||+.||++||++++++...+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~ 65 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCC
Confidence 45677899999999999999999999 69999999999 9999999999999999876543
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-16 Score=114.20 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=55.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhcccCCCccccchhhhhhccCCCcCCC
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGE-----GRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQ 68 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~-----~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~ 68 (259)
+|++++++||+|||++|+++|..||. .+|..||+.|+ +||..||++||.++|.+.++.+.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999995 58999999999 99999999999999998777664
No 34
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.58 E-value=7.3e-16 Score=113.14 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCCCcC
Q 047854 6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKR 66 (259)
Q Consensus 6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k 66 (259)
+.+|.+++++||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999 9999999999 999999999999999876655
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=4e-15 Score=102.91 Aligned_cols=49 Identities=29% Similarity=0.339 Sum_probs=46.2
Q ss_pred cCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhc
Q 047854 65 KRGQLTPQEEGIIIELHALWG-NKWSTIARYLP--GRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 65 ~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~qcknrw~~~lkk 113 (259)
++++||+|||.+|+++|.+|| ++|+.||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=1.9e-15 Score=106.66 Aligned_cols=53 Identities=25% Similarity=0.516 Sum_probs=48.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhc
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYL 60 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L 60 (259)
+..+.+++||+|||++|+++|.+||..+|..||+.|+.+||+.||++||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 34566899999999999999999997799999999976799999999999875
No 37
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.56 E-value=1.8e-15 Score=104.67 Aligned_cols=50 Identities=32% Similarity=0.554 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhccc-CCCccccchhhhhhcc
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGL-NRSGKSCRLRWVNYLR 61 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~-gRt~~Qcr~Rw~~~L~ 61 (259)
++++||+|||++|+++|..||.++|..||..++. +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 5899999999999999999998799999999964 6999999999999875
No 38
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.55 E-value=8.4e-15 Score=114.92 Aligned_cols=69 Identities=17% Similarity=0.353 Sum_probs=64.6
Q ss_pred CCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhccccchhhhHHHHHHHHHHHHH
Q 047854 66 RGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALLLKQKQQQ 134 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~~~~~k~e~~~l~~~~~q 134 (259)
+++||+|||.+|+++|.+||. +|..||..|||||+.||+.||.+++.+...+++|+.+|+.++...+.+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~ 70 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAE 70 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHH
Confidence 579999999999999999996 799999999999999999999999999999999999999888777655
No 39
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.3e-15 Score=108.69 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=52.0
Q ss_pred cCCCcCCCCCHHhHHHHHHHHHHcC------CCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 61 RPGLKRGQLTPQEEGIIIELHALWG------NKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 61 ~p~l~k~~WT~eED~~Ll~~v~~~G------~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
+|.+.+++||+|||.+|++++.+|| .+|..||.+|+|||+.||++||++++.+..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 6899999999999999999999999887544
No 40
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=1.3e-14 Score=104.50 Aligned_cols=52 Identities=27% Similarity=0.437 Sum_probs=46.9
Q ss_pred CcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhccc
Q 047854 64 LKRGQLTPQEEGIIIELHALWG-NKWSTIARYLP--GRTDNEIKNYWRTHFKKEK 115 (259)
Q Consensus 64 l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~--gRT~~qcknrw~~~lkk~~ 115 (259)
.++++||+|||++|+++|.+|| ++|+.||+.++ |||+.||++||++++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4788999999999999999999 58999999865 9999999999999988753
No 41
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.52 E-value=1.5e-14 Score=102.08 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=46.5
Q ss_pred CCCcCCCCCHHhHHHHHHHHHHcC-CCHHHHHhhCC-CCCHHHHHHHHHHhh
Q 047854 62 PGLKRGQLTPQEEGIIIELHALWG-NKWSTIARYLP-GRTDNEIKNYWRTHF 111 (259)
Q Consensus 62 p~l~k~~WT~eED~~Ll~~v~~~G-~~W~~Ia~~l~-gRT~~qcknrw~~~l 111 (259)
..+.+++||++||.+|+++|.+|| ++|..||++|+ +||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998875
No 42
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.21 E-value=3.4e-15 Score=114.06 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=53.0
Q ss_pred hccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 59 YLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 59 ~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
.++|.+.+++||+|||.+|++++.+||.+|+.||.+|+|||++||++||+.++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 56788999999999999999999999999999999999999999999999998873
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.45 E-value=1e-13 Score=104.72 Aligned_cols=69 Identities=28% Similarity=0.497 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhh----cccCCCccccchhhhhhc-----cCCCcCC-CCCHHhHHHHHHHHHH
Q 047854 14 GPWTPEEDKLLTEHVNLLGEGRWSSVARS----AGLNRSGKSCRLRWVNYL-----RPGLKRG-QLTPQEEGIIIELHAL 83 (259)
Q Consensus 14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~----l~~gRt~~Qcr~Rw~~~L-----~p~l~k~-~WT~eED~~Ll~~v~~ 83 (259)
++||+|||+.|+++|.+||.++|..|++. |+ +||..+|++||.+++ +|.++++ +..++...+++.+...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999996 77 999999999999988 6776665 6777777888888764
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.42 E-value=1.4e-13 Score=108.27 Aligned_cols=78 Identities=28% Similarity=0.520 Sum_probs=67.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc----ccCCCccccchhhhhhc-----cCCCcCCCCCHHhHHH-
Q 047854 7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSA----GLNRSGKSCRLRWVNYL-----RPGLKRGQLTPQEEGI- 76 (259)
Q Consensus 7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l----~~gRt~~Qcr~Rw~~~L-----~p~l~k~~WT~eED~~- 76 (259)
..+..++++||+|||+.|+++|.+||.++|..|++.+ + +||..+|++||.+++ +|.++++.-++.|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 3577889999999999999999999999999999965 5 999999999999998 6899999888877555
Q ss_pred HHHHHHHcC
Q 047854 77 IIELHALWG 85 (259)
Q Consensus 77 Ll~~v~~~G 85 (259)
++++...+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776655
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.38 E-value=4e-13 Score=99.17 Aligned_cols=52 Identities=12% Similarity=0.251 Sum_probs=47.7
Q ss_pred CCCcCCCCCHHhHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 62 PGLKRGQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 62 p~l~k~~WT~eED~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
+...+++||.+||.+|++++..|| .+|.+||++|||||.++|++||..++..
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456788999999999999999999 6799999999999999999999988764
No 46
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.08 E-value=3.9e-14 Score=108.21 Aligned_cols=54 Identities=24% Similarity=0.446 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhcc
Q 047854 6 TTEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR 61 (259)
Q Consensus 6 ~l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~ 61 (259)
++.|.+++|+||+|||++|+++|..||. +|..||..|+ |||..||+.||.++|.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKK 62 (89)
Confidence 4679999999999999999999999999 8999999999 9999999999998875
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.37 E-value=3e-13 Score=101.24 Aligned_cols=51 Identities=24% Similarity=0.534 Sum_probs=47.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854 7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY 59 (259)
Q Consensus 7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~ 59 (259)
..+...+++||+|||++|+++|..|| .+|.+||++|+ +||..||+.||.++
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 34566789999999999999999999 59999999999 99999999999987
No 48
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=5.8e-13 Score=99.67 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 047854 63 GLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTH 110 (259)
Q Consensus 63 ~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~ 110 (259)
...+++||+|||.+|++++.+||.+|..||+++++||+.||+.||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999887
No 49
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.35 E-value=2.1e-12 Score=103.88 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=57.3
Q ss_pred ccCCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhhh-----ccccch-hhhHHHHHHH
Q 047854 60 LRPGLKRGQLTPQEEGIIIELHALWGN-KWSTIARY----LPGRTDNEIKNYWRTHFK-----KEKSSQ-KQEKRKALLL 128 (259)
Q Consensus 60 L~p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~qcknrw~~~lk-----k~~~~~-~~~k~e~~~l 128 (259)
+.+..++++||+|||+.|+++|.+||. +|+.|++. |++||+.+||+||+++++ +..+++ ++...+...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456778999999999999999999997 99999997 599999999999999998 544443 4445444444
Q ss_pred HH
Q 047854 129 KQ 130 (259)
Q Consensus 129 ~~ 130 (259)
..
T Consensus 91 ~~ 92 (121)
T 2juh_A 91 LA 92 (121)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.33 E-value=4.9e-13 Score=98.72 Aligned_cols=54 Identities=22% Similarity=0.445 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhcc
Q 047854 7 TEQGWRKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYLR 61 (259)
Q Consensus 7 l~p~~rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~ 61 (259)
..+...+++||++||++|+.+|..||. .+|.+||+.|| |||..||+.||..++.
T Consensus 12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 346678899999999999999999993 47999999999 9999999999998764
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.32 E-value=1.9e-12 Score=114.64 Aligned_cols=73 Identities=19% Similarity=0.376 Sum_probs=61.8
Q ss_pred CCCcCCCCCHHhHHHHHHHHHHcCCC------HHHHHhhCCCCCHHHHHHHHHHhhhcccc-------------------
Q 047854 62 PGLKRGQLTPQEEGIIIELHALWGNK------WSTIARYLPGRTDNEIKNYWRTHFKKEKS------------------- 116 (259)
Q Consensus 62 p~l~k~~WT~eED~~Ll~~v~~~G~~------W~~Ia~~l~gRT~~qcknrw~~~lkk~~~------------------- 116 (259)
+.+++++||+|||++|+++|.+||++ |..||++|||||+++||+||+.+|++...
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ 83 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL 83 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence 35688999999999999999999985 99999999999999999999999999875
Q ss_pred ----------chhhhHHHHHHHHHHHHH
Q 047854 117 ----------SQKQEKRKALLLKQKQQQ 134 (259)
Q Consensus 117 ----------~~~~~k~e~~~l~~~~~q 134 (259)
+.+++.+++..|......
T Consensus 84 ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 84 IKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp CEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred eeeeccCccccCccchhccHHHHHHHHH
Confidence 678888888777665544
No 52
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=4e-12 Score=90.68 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=47.1
Q ss_pred CcCCCCCHHhHHHHHHHHHHcCCCHHHHH---hhCCCCCHHHHHHHHHHhhhcc
Q 047854 64 LKRGQLTPQEEGIIIELHALWGNKWSTIA---RYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 64 l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia---~~l~gRT~~qcknrw~~~lkk~ 114 (259)
.++.+||+|||+.|++.|++||.+|+.|+ .+|++||..++|+||+++.++.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 36789999999999999999999999999 5779999999999999998764
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=4.3e-12 Score=95.80 Aligned_cols=47 Identities=19% Similarity=0.378 Sum_probs=44.0
Q ss_pred CCCCHHhHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhhhc
Q 047854 67 GQLTPQEEGIIIELHALWGN-KWSTIARY----LPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 67 ~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~qcknrw~~~lkk 113 (259)
.+||+|||+.|+++|.+||. +|+.|++. |++||+.+||+||+++++.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999997 89999996 8999999999999999974
No 54
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.23 E-value=1.1e-11 Score=97.47 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=47.8
Q ss_pred CCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhhC----CCCCHHHHHHHHHHhhhc
Q 047854 62 PGLKRGQLTPQEEGIIIELHALWGN-KWSTIARYL----PGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 62 p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l----~gRT~~qcknrw~~~lkk 113 (259)
+..++++||+|||+.|+++|.+||. +|+.|++.+ ++||+.+||+||+++++.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 4568899999999999999999997 899999965 899999999999999974
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.22 E-value=1.5e-11 Score=99.00 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=52.5
Q ss_pred CCCcCCCCCHHhHHHHHHHHHHcCC-CHHHHHhh----CCCCCHHHHHHHHHHhhh-----ccccchhhhHHH
Q 047854 62 PGLKRGQLTPQEEGIIIELHALWGN-KWSTIARY----LPGRTDNEIKNYWRTHFK-----KEKSSQKQEKRK 124 (259)
Q Consensus 62 p~l~k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~----l~gRT~~qcknrw~~~lk-----k~~~~~~~~k~e 124 (259)
...++++||+|||+.|+++|.+||. +|+.|++. |++||..+||+||+++++ +..+++.+..++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e 99 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQE 99 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHH
Confidence 3457889999999999999999997 89999986 489999999999999995 444555555444
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.17 E-value=2.8e-11 Score=93.15 Aligned_cols=49 Identities=20% Similarity=0.432 Sum_probs=44.5
Q ss_pred cCCCCCHHhHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 65 KRGQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 65 ~k~~WT~eED~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
.+++||.|||.+|++++..|| .+|.+||.+|||||.++|++||..++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999996 5799999999999999999999988754
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.11 E-value=2.3e-11 Score=93.66 Aligned_cols=48 Identities=21% Similarity=0.536 Sum_probs=43.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhc
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYL 60 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L 60 (259)
.+++||+|||++|++++..|+. .+|.+||+.|| |||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4678999999999999999973 47999999999 999999999999764
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.4e-10 Score=79.75 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=43.9
Q ss_pred cCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 047854 65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK 112 (259)
Q Consensus 65 ~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lk 112 (259)
..++||++|+.++++++..||.+|..||.+||+||..+|..+|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999965543
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=1e-09 Score=77.88 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=44.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY 59 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~ 59 (259)
...-..++||+||++++++++..||. +|..||..|+ +||..||..+|...
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT 56 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 34456689999999999999999997 8999999999 99999999998754
No 60
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.90 E-value=2.3e-09 Score=82.43 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=55.7
Q ss_pred cccchhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhC-----CCCCHHHHHHHHHHhhhcc
Q 047854 50 KSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYL-----PGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 50 ~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l-----~gRT~~qcknrw~~~lkk~ 114 (259)
.=+.++|.++|.+ .+||.||+..|++++++|+.+|..|+..+ ++||..++|+||..+.++.
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 4578999999976 89999999999999999999999999998 5899999999999887763
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.86 E-value=1.2e-09 Score=77.79 Aligned_cols=49 Identities=18% Similarity=0.300 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhh---hhcccCCCccccchhhhhhcc
Q 047854 11 WRKGPWTPEEDKLLTEHVNLLGEGRWSSVA---RSAGLNRSGKSCRLRWVNYLR 61 (259)
Q Consensus 11 ~rkg~WT~EED~~L~~lV~~~g~~~W~~IA---~~l~~gRt~~Qcr~Rw~~~L~ 61 (259)
-++.+||+|||+.|+++|.+||. .|..|+ ..++ +||...+++||+++..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 37899999999999999999999 999999 4666 9999999999998654
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81 E-value=5e-09 Score=76.90 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=45.0
Q ss_pred CCcCCCCCHHhHHHHHHHHHHcC----CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 63 GLKRGQLTPQEEGIIIELHALWG----NKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 63 ~l~k~~WT~eED~~Ll~~v~~~G----~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
....++||.|||.+|.+++..|+ .+|.+||.++ |||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 44678999999999999999997 5699999998 99999999999888765
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.76 E-value=9.4e-09 Score=90.34 Aligned_cols=49 Identities=12% Similarity=0.301 Sum_probs=45.9
Q ss_pred cCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 65 ~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
..++||+||+.++++++.+||++|..||+.+++||..||+++|....++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999877765
No 64
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.70 E-value=1.2e-08 Score=98.64 Aligned_cols=47 Identities=13% Similarity=0.331 Sum_probs=43.2
Q ss_pred CCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 67 GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 67 ~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
.+||++|..++++++.+||.+|..||+.+++||..|||++|..+.++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999765444
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.69 E-value=8.8e-09 Score=75.61 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=45.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhccC
Q 047854 9 QGWRKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYLRP 62 (259)
Q Consensus 9 p~~rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p 62 (259)
.+...++||.|||++|.+++..|+. ++|.+||+.+ |||..+|+.||..+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 4456789999999999999999984 4799999997 69999999999876543
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.64 E-value=2e-08 Score=73.96 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhcccCCCccccchhhhhhccC
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGE---GRWSSVARSAGLNRSGKSCRLRWVNYLRP 62 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~---~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p 62 (259)
....||.+|+++|..++..|+. ++|.+||..+| |||..+|+.||..++.-
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 3467999999999999999986 47999999999 99999999999977543
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.59 E-value=5.2e-08 Score=71.68 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=45.9
Q ss_pred CCCCCHHhHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854 66 RGQLTPQEEGIIIELHALWGN----KWSTIARYLPGRTDNEIKNYWRTHFKKEKSS 117 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~ 117 (259)
...||.+|+.+|.+++..|+. +|..||..++|||..+|+.||..+++...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~ 63 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ 63 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence 458999999999999999984 5999999999999999999999987764443
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.55 E-value=3e-08 Score=70.04 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhh-hcccCCCccccchhhhhhcc
Q 047854 13 KGPWTPEEDKLLTEHVNLL--------GEGRWSSVAR-SAGLNRSGKSCRLRWVNYLR 61 (259)
Q Consensus 13 kg~WT~EED~~L~~lV~~~--------g~~~W~~IA~-~l~~gRt~~Qcr~Rw~~~L~ 61 (259)
+.+||+|||..|++.|..| |..-|..+|+ .++ ++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 5689999999999999999 5446999999 788 9999999999999874
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.42 E-value=1.1e-07 Score=83.57 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhcc
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR 61 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~ 61 (259)
..++||+||++++++++..||. +|..||+.|+ +||..||+.+|.++..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4678999999999999999998 8999999999 9999999999987653
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.40 E-value=3.1e-07 Score=64.81 Aligned_cols=47 Identities=19% Similarity=0.363 Sum_probs=42.4
Q ss_pred CCCCCHHhHHHHHHHHHHc--------CCC-HHHHHh-hCCCCCHHHHHHHHHHhhh
Q 047854 66 RGQLTPQEEGIIIELHALW--------GNK-WSTIAR-YLPGRTDNEIKNYWRTHFK 112 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~--------G~~-W~~Ia~-~l~gRT~~qcknrw~~~lk 112 (259)
+.+||+|||..|++.|.+| |++ |..+++ .+|++|-.+||+||.+.|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 444 999999 7999999999999998774
No 71
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.29 E-value=2.3e-06 Score=78.48 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=79.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccch-------hhhh---------h------------------
Q 047854 14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRL-------RWVN---------Y------------------ 59 (259)
Q Consensus 14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~-------Rw~~---------~------------------ 59 (259)
+.||..+...++.++.+||..+|..||..|+ |+|...++. ||.. .
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999998 999976643 2200 0
Q ss_pred -------------c---cCCCcCCCCCHHhHHHHHHHHHHcCC----CHHHHH---h---------hCCCCCHHHHHHHH
Q 047854 60 -------------L---RPGLKRGQLTPQEEGIIIELHALWGN----KWSTIA---R---------YLPGRTDNEIKNYW 107 (259)
Q Consensus 60 -------------L---~p~l~k~~WT~eED~~Ll~~v~~~G~----~W~~Ia---~---------~l~gRT~~qcknrw 107 (259)
| .+..+...||++||+.||-++.+||- .|..|. + +|..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 11224568999999999999999996 399996 2 45679999999999
Q ss_pred HHhhhc
Q 047854 108 RTHFKK 113 (259)
Q Consensus 108 ~~~lkk 113 (259)
..+++-
T Consensus 270 ~tLi~~ 275 (304)
T 1ofc_X 270 NTLITL 275 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988864
No 72
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.26 E-value=1.6e-07 Score=68.92 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhcccCCCccccchhhh
Q 047854 13 KGPWTPEEDKLLTEHVNLLGEG---RWSSVARSAGLNRSGKSCRLRWV 57 (259)
Q Consensus 13 kg~WT~EED~~L~~lV~~~g~~---~W~~IA~~l~~gRt~~Qcr~Rw~ 57 (259)
.++||.+|+++|..++..|+.+ +|.+||+.|| |||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 4679999999999999999774 7999999999 999999999985
No 73
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2.6e-06 Score=60.63 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=44.4
Q ss_pred cCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 047854 61 RPGLKRGQLTPQEEGIIIELHALWGNKWSTIAR-YLPGRTDNEIKNYWRT 109 (259)
Q Consensus 61 ~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~-~l~gRT~~qcknrw~~ 109 (259)
.|.+...+||+||-.+..+++.+||.+|..|++ .+++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 366778899999999999999999999999999 5899999999988853
No 74
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.15 E-value=2.6e-06 Score=64.77 Aligned_cols=46 Identities=20% Similarity=0.320 Sum_probs=43.0
Q ss_pred CCCHHhHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 68 QLTPQEEGIIIELHALWGN---KWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 68 ~WT~eED~~Ll~~v~~~G~---~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
.||.|||+.||..+.+-|. .|..||+.|.+|+++||++||+.+++-
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6999999999999999986 699999999999999999999988763
No 75
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=3.5e-06 Score=59.94 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhh-hcccCCCccccchhhhh
Q 047854 7 TEQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVAR-SAGLNRSGKSCRLRWVN 58 (259)
Q Consensus 7 l~p~~rkg~WT~EED~~L~~lV~~~g~~~W~~IA~-~l~~gRt~~Qcr~Rw~~ 58 (259)
..|.+...+||+||-+++.+++..||. +|..|++ .|+ +||..+|..-|..
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence 468888899999999999999999999 8999999 588 9999999887753
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.29 E-value=6.4e-07 Score=64.66 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCHHhHHHHHHHHHHcCC---CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 68 QLTPQEEGIIIELHALWGN---KWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 68 ~WT~eED~~Ll~~v~~~G~---~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
.||.|||+.||..+.+-|. .|..||+.| +||++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 699999999 99999999999988764
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.00 E-value=1.2e-06 Score=64.33 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=38.2
Q ss_pred CCCCCHHhHHHHHHHHHHcCC----CHHHHHhhCCCCCHHHHHHHH
Q 047854 66 RGQLTPQEEGIIIELHALWGN----KWSTIARYLPGRTDNEIKNYW 107 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~l~gRT~~qcknrw 107 (259)
..+||.+|+++|..++..|+. +|.+||..+||||..+|+.+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence 458999999999999999985 699999999999999999988
No 78
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.87 E-value=3.2e-06 Score=64.83 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=42.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcc----cCCCccccchhhhhhc
Q 047854 14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAG----LNRSGKSCRLRWVNYL 60 (259)
Q Consensus 14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~----~gRt~~Qcr~Rw~~~L 60 (259)
.+||.||+..|.+++..|+. +|..|+..+. .+||..++++||..+.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999 9999999983 2799999999998654
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.87 E-value=2.7e-05 Score=56.53 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=40.4
Q ss_pred CCCCCHHhHHHHHHHHHHcCCCHHHHHh-hCCCCCHHHHHHHHH
Q 047854 66 RGQLTPQEEGIIIELHALWGNKWSTIAR-YLPGRTDNEIKNYWR 108 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~-~l~gRT~~qcknrw~ 108 (259)
..+||++|..+..+++.+||.+|..|++ .+++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 589999999999886
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.82 E-value=3.1e-05 Score=59.28 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=41.1
Q ss_pred CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHH
Q 047854 66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRT 109 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~ 109 (259)
...||++|..++.+++..||.+|..|+..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999999999999999999999999999999999998853
No 81
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.80 E-value=4.6e-05 Score=58.28 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=48.7
Q ss_pred hhhhhhccCCCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCC-----CCCHHHHHHHHHHhhhcc
Q 047854 54 LRWVNYLRPGLKRGQLTPQEEGIIIELHALWGNKWSTIARYLP-----GRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 54 ~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~-----gRT~~qcknrw~~~lkk~ 114 (259)
+.|..+|. ...||.||...|++++++|+-+|..|+..+. .||..++|.||..+.++.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l 83 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 45666664 3689999999999999999999999988763 799999999999887763
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.60 E-value=3e-05 Score=74.90 Aligned_cols=46 Identities=26% Similarity=0.474 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY 59 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~ 59 (259)
...+||.+|-+++++++.+||. +|..||+.|+ +||..||+..|.++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4678999999999999999999 9999999999 99999999988753
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.59 E-value=4.1e-05 Score=55.54 Aligned_cols=45 Identities=16% Similarity=0.188 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhh-hcccCCCccccchhhhh
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVAR-SAGLNRSGKSCRLRWVN 58 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~-~l~~gRt~~Qcr~Rw~~ 58 (259)
...+||+||-+++.+++..||. +|..|++ .|+ +||..+|..-|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 3457999999999999999999 8999999 698 9999999987763
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.48 E-value=5.8e-05 Score=57.79 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhh
Q 047854 14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVN 58 (259)
Q Consensus 14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~ 58 (259)
..||+||.+++.+++..||+ +|..||..|+ +||..+|-.-|..
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL 86 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence 56999999999999999999 8999999999 9999999987753
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.16 E-value=0.00037 Score=52.95 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=43.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhcccCCCccccchhhhhh
Q 047854 8 EQGWRKGPWTPEEDKLLTEHVNLLGE--GRWSSVARSAGLNRSGKSCRLRWVNY 59 (259)
Q Consensus 8 ~p~~rkg~WT~EED~~L~~lV~~~g~--~~W~~IA~~l~~gRt~~Qcr~Rw~~~ 59 (259)
+++-+---||.|||..|+....+-|. ..|..||+.|+ +|++.|+.+||...
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence 34444556999999999999999876 46999999998 99999999999864
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.13 E-value=0.0001 Score=54.90 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CChhhhhhhc---ccCCCccccchhhhhhc
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGE---------GRWSSVARSA---GLNRSGKSCRLRWVNYL 60 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~---------~~W~~IA~~l---~~gRt~~Qcr~Rw~~~L 60 (259)
|...||.+|-..|+.+...... ..|..||..| +..||+.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678999999999999876321 1599999976 35799999999998754
No 87
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.08 E-value=0.002 Score=60.46 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh----------------------------------
Q 047854 14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY---------------------------------- 59 (259)
Q Consensus 14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~---------------------------------- 59 (259)
+.||.-+=..++.++.+||..+-..||..|.+++|...++. |..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999954688865552 1111
Q ss_pred --------------c----cCC-CcCCCCCHHhHHHHHHHHHHcCC----CHHHHHhh------------CCCCCHHHHH
Q 047854 60 --------------L----RPG-LKRGQLTPQEEGIIIELHALWGN----KWSTIARY------------LPGRTDNEIK 104 (259)
Q Consensus 60 --------------L----~p~-l~k~~WT~eED~~Ll~~v~~~G~----~W~~Ia~~------------l~gRT~~qck 104 (259)
| .++ .+...||++||..||-++.+||- .|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 1 111 13457999999999999999994 49999332 3569999999
Q ss_pred HHHHHhhhc
Q 047854 105 NYWRTHFKK 113 (259)
Q Consensus 105 nrw~~~lkk 113 (259)
.|...+++-
T Consensus 283 rRc~tLi~~ 291 (374)
T 2y9y_A 283 RRGNTLLQC 291 (374)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888874
No 88
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.05 E-value=0.00032 Score=52.23 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=40.4
Q ss_pred CCCCCHHhHHHHHHHHHHcCC----------CHHHHHhhCC----CCCHHHHHHHHHHhhhc
Q 047854 66 RGQLTPQEEGIIIELHALWGN----------KWSTIARYLP----GRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~----------~W~~Ia~~l~----gRT~~qcknrw~~~lkk 113 (259)
...||.+|...||+++.++.. .|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999986421 3999999763 69999999999998876
No 89
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.96 E-value=0.0012 Score=56.51 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCChhhhhhh--cccCCCcccc
Q 047854 11 WRKGPWTPEEDKLLTEHVNLLG--EGRWSSVARS--AGLNRSGKSC 52 (259)
Q Consensus 11 ~rkg~WT~EED~~L~~lV~~~g--~~~W~~IA~~--l~~gRt~~Qc 52 (259)
-....||..|-..|+.++.+|| ..+|..|+.. |. +||...+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v 49 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDL 49 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHH
Confidence 3456799999999999999999 5689999864 55 6766433
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.96 E-value=0.00014 Score=52.43 Aligned_cols=48 Identities=13% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CChhhhhhhcccCCCccccchhhhhhcc
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGE--GRWSSVARSAGLNRSGKSCRLRWVNYLR 61 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~--~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~ 61 (259)
.--.||.|||..|+....+-|. ..|..||..| +||+.|+.+||...+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 3346999999999999998876 4699999998 6999999999987553
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.01 E-value=0.0051 Score=46.95 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcc----cCCCccccchhhhhhc
Q 047854 12 RKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAG----LNRSGKSCRLRWVNYL 60 (259)
Q Consensus 12 rkg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~----~gRt~~Qcr~Rw~~~L 60 (259)
+...||.||...|.+++..|+. +|.-|+.... ..||..+.++||..+.
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999 9999999864 2699999999998754
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.48 E-value=0.033 Score=39.58 Aligned_cols=49 Identities=10% Similarity=-0.021 Sum_probs=41.4
Q ss_pred CcCCCCCHHhHHHHHHHHHHcCCC---HHHHHhhC--CCCCHHHHHHHHHHhhh
Q 047854 64 LKRGQLTPQEEGIIIELHALWGNK---WSTIARYL--PGRTDNEIKNYWRTHFK 112 (259)
Q Consensus 64 l~k~~WT~eED~~Ll~~v~~~G~~---W~~Ia~~l--~gRT~~qcknrw~~~lk 112 (259)
..+-.||+|.....++++..+|.. +..|.+.| +|.|..+|++|...+..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 345689999999999999999955 88998876 78999999998766543
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.48 E-value=0.33 Score=44.21 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=44.1
Q ss_pred CCCCCHHhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 66 RGQLTPQEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
-+.||..+...++.++.+||. .|..||..++|+|...|+.++.....+-
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 457999999999999999996 5999999999999999999888777764
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.23 E-value=0.19 Score=42.54 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=41.1
Q ss_pred cCCCCCHHhHHHHHHHHHHcC---CCHHHHHh--hCCCCCHHHHHHHHHHhhhc
Q 047854 65 KRGQLTPQEEGIIIELHALWG---NKWSTIAR--YLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 65 ~k~~WT~eED~~Ll~~v~~~G---~~W~~Ia~--~l~gRT~~qcknrw~~~lkk 113 (259)
....||+.|-..|+.++.+|| .+|..|+. .|.+||...++..+..++..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 57999987 47899999999987766654
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.84 E-value=0.21 Score=44.83 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhh
Q 047854 14 GPWTPEEDKLLTEHVNLLGEGRWSSVAR 41 (259)
Q Consensus 14 g~WT~EED~~L~~lV~~~g~~~W~~IA~ 41 (259)
-.|+.+||..|+..|.+||.++|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999965
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=85.90 E-value=1.1 Score=31.65 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--Chhhhhhhccc-CCCccccchhhhh
Q 047854 9 QGWRKGPWTPEEDKLLTEHVNLLGEG--RWSSVARSAGL-NRSGKSCRLRWVN 58 (259)
Q Consensus 9 p~~rkg~WT~EED~~L~~lV~~~g~~--~W~~IA~~l~~-gRt~~Qcr~Rw~~ 58 (259)
+.-.+-.||+|.-+.+..+|...|.. .+..|.+.|+. |.|..+++.+...
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34456789999999999999999953 27889887642 5677777766443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.19 E-value=2.1 Score=38.20 Aligned_cols=49 Identities=10% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCCCCHHhHHHHHHHHHHcC---CCHHHHHh--hCCCCCHHHHHHHHHHhhhcc
Q 047854 66 RGQLTPQEEGIIIELHALWG---NKWSTIAR--YLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G---~~W~~Ia~--~l~gRT~~qcknrw~~~lkk~ 114 (259)
+++||+.|-+.|++++.+|| .+|..|+. .|+.++...++.-+..++...
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999 57999976 678999999999998888763
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.97 E-value=9.2 Score=25.36 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 72 QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 72 eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
+.+..++.++...|..+.+||..+ |-|...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566777767889999999999 88999999887666554
No 99
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=61.80 E-value=12 Score=25.16 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=32.4
Q ss_pred HhHHHHHHHHH----HcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccc
Q 047854 72 QEEGIIIELHA----LWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEK 115 (259)
Q Consensus 72 eED~~Ll~~v~----~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~ 115 (259)
+.+..++.+.. ..|..+.+||..+ |-|...|+.+....+++.+
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHH
Confidence 34455555555 3578899999999 9999999998877777643
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.19 E-value=12 Score=25.57 Aligned_cols=42 Identities=14% Similarity=0.325 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHH----cCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 72 QEEGIIIELHAL----WGNKWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 72 eED~~Ll~~v~~----~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
+.+..++.+..- .|..+.+||..+ |-|...|+.+....+++.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 344455555554 678899999999 899999999877666654
No 101
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=56.66 E-value=7.6 Score=30.43 Aligned_cols=45 Identities=16% Similarity=0.319 Sum_probs=32.8
Q ss_pred ChhhhhhhcccCCCc----cccchhhhhhccCCCcCCCCCHHhHHHHHHHHH
Q 047854 35 RWSSVARSAGLNRSG----KSCRLRWVNYLRPGLKRGQLTPQEEGIIIELHA 82 (259)
Q Consensus 35 ~W~~IA~~l~~gRt~----~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~~v~ 82 (259)
.|..||..|+...+. ...+..|.++|.|- ...+++|-..|.+-+.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 699999999644433 46688898888762 2478888888876654
No 102
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=55.11 E-value=38 Score=31.50 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=40.7
Q ss_pred CCCCCHHhHHHHHHHHHHcCCC-HHHHHhhCC-CCCHHHHHHHHHHhhhc
Q 047854 66 RGQLTPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~~-W~~Ia~~l~-gRT~~qcknrw~~~lkk 113 (259)
-+.||.-|=..++.++.+||.. -..||..|. |+|...|+.++.....+
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~R 172 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSN 172 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHT
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 3469999999999999999965 999999997 99999999766666555
No 103
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=53.45 E-value=7.3 Score=29.98 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcccCCCccccchhhhhhccC
Q 047854 23 LLTEHVNLLGE-------GRWSSVARSAGLNRSGKSCRLRWVNYLRP 62 (259)
Q Consensus 23 ~L~~lV~~~g~-------~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p 62 (259)
+|-.+|...|. ..|..||..|+ --.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg-~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQ-ISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHT-SCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 35556666554 36999999997 34477888889888865
No 104
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=51.91 E-value=12 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHHHHHHcCC--------CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 77 IIELHALWGN--------KWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 77 Ll~~v~~~G~--------~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
|..+|.+.|+ .|..|+..|.--+...++..|.++|-+
T Consensus 54 Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 54 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 6777777773 699999988444478999999888876
No 105
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=50.16 E-value=8.5 Score=31.07 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=28.9
Q ss_pred hhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHH
Q 047854 36 WSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIE 79 (259)
Q Consensus 36 W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~ 79 (259)
-..||.++. |+|+.+||.-|. ....+|+||++.|.+
T Consensus 118 c~~vA~~ik-gkt~eeir~~f~-------I~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 118 CQTVADMIK-GKTPEEIRTTFN-------IKNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHHTTT-TCCHHHHHHHTT-------CCCCCCHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC-------CCCCCCHHHHHHHHH
Confidence 568899998 999999999774 234599999988754
No 106
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=48.46 E-value=27 Score=26.74 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=27.8
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCCCC----HHHHHHHHHHhhhc
Q 047854 76 IIIELHALWGN--------KWSTIARYLPGRT----DNEIKNYWRTHFKK 113 (259)
Q Consensus 76 ~Ll~~v~~~G~--------~W~~Ia~~l~gRT----~~qcknrw~~~lkk 113 (259)
.|..+|.+.|+ .|..|+..|.--+ ...+|..|.++|.+
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46777777773 6999999883222 56789999888765
No 107
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=48.21 E-value=23 Score=25.15 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=32.5
Q ss_pred HhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 72 QEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 72 eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
+.++.++.++...|-.-.+||..+ |.|...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566777667788899999999 89999999988766655
No 108
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=47.90 E-value=62 Score=25.10 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=28.6
Q ss_pred HHHHHHHcCC--------CHHHHHhhC--CCC---CHHHHHHHHHHhhhcc
Q 047854 77 IIELHALWGN--------KWSTIARYL--PGR---TDNEIKNYWRTHFKKE 114 (259)
Q Consensus 77 Ll~~v~~~G~--------~W~~Ia~~l--~gR---T~~qcknrw~~~lkk~ 114 (259)
|..+|.+.|+ .|..||..| |.- ....+|.+|.++|-+-
T Consensus 47 Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 47 FFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 6777778874 699999988 322 2468899999988873
No 109
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=46.97 E-value=31 Score=25.74 Aligned_cols=38 Identities=13% Similarity=0.264 Sum_probs=26.8
Q ss_pred HHHHHHHHcC--------CCHHHHHhhCCCCC----HHHHHHHHHHhhhc
Q 047854 76 IIIELHALWG--------NKWSTIARYLPGRT----DNEIKNYWRTHFKK 113 (259)
Q Consensus 76 ~Ll~~v~~~G--------~~W~~Ia~~l~gRT----~~qcknrw~~~lkk 113 (259)
.|..+|.+.| +.|..|+..|.--+ ...+|..|.++|-+
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 3666677777 36999999883222 46788888887754
No 110
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=44.16 E-value=14 Score=27.86 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcccCCC----ccccchhhhhhccC
Q 047854 23 LLTEHVNLLGE-------GRWSSVARSAGLNRS----GKSCRLRWVNYLRP 62 (259)
Q Consensus 23 ~L~~lV~~~g~-------~~W~~IA~~l~~gRt----~~Qcr~Rw~~~L~p 62 (259)
+|-.+|...|. ..|..||..|+...+ +.+++..|.++|.|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35556665543 369999999874332 35678888888876
No 111
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.08 E-value=52 Score=22.11 Aligned_cols=45 Identities=18% Similarity=0.136 Sum_probs=33.8
Q ss_pred CCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 69 LTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 69 WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
.|+.|- .++.++ ..|..-.+||..+ |-|...|+.+....+++...
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcC
Confidence 445444 444555 6688899999999 88999999998888777544
No 112
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=42.89 E-value=18 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=27.8
Q ss_pred HHHHHHHcCC--------CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 77 IIELHALWGN--------KWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 77 Ll~~v~~~G~--------~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
|..+|.+.|+ .|..|+..|.--+...+|..|.++|-+
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 6666666663 499999987444488999999888765
No 113
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=42.27 E-value=39 Score=26.08 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=26.3
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCCC--C--HHHHHHHHHHhhhc
Q 047854 76 IIIELHALWGN--------KWSTIARYLPGR--T--DNEIKNYWRTHFKK 113 (259)
Q Consensus 76 ~Ll~~v~~~G~--------~W~~Ia~~l~gR--T--~~qcknrw~~~lkk 113 (259)
+|..+|.+.|+ .|..|+..|.-- + ...+|..|.++|.+
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 36677777773 699999988322 1 35778888777654
No 114
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.24 E-value=36 Score=24.00 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=31.5
Q ss_pred hHHHHHHHHHH----cCCCHHHHHhhCCCCCHHHHHHHHHHhhhccc
Q 047854 73 EEGIIIELHAL----WGNKWSTIARYLPGRTDNEIKNYWRTHFKKEK 115 (259)
Q Consensus 73 ED~~Ll~~v~~----~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~ 115 (259)
.+..++.+..- .|-.+.+||..+ |-|...|+.+....+++.+
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 34455555554 577899999999 9999999998877766643
No 115
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=41.23 E-value=40 Score=26.07 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=26.7
Q ss_pred HHHHHHHHcCC--------CHHHHHhhCCCCC----HHHHHHHHHHhhhc
Q 047854 76 IIIELHALWGN--------KWSTIARYLPGRT----DNEIKNYWRTHFKK 113 (259)
Q Consensus 76 ~Ll~~v~~~G~--------~W~~Ia~~l~gRT----~~qcknrw~~~lkk 113 (259)
.|..+|.+.|+ .|.+|+..|.--+ ...+|..|.++|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 36677777773 6999999883222 45778888777765
No 116
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=41.11 E-value=12 Score=28.92 Aligned_cols=40 Identities=25% Similarity=0.361 Sum_probs=26.7
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcccCCC---ccccchhhhhhccC
Q 047854 23 LLTEHVNLLGE-------GRWSSVARSAGLNRS---GKSCRLRWVNYLRP 62 (259)
Q Consensus 23 ~L~~lV~~~g~-------~~W~~IA~~l~~gRt---~~Qcr~Rw~~~L~p 62 (259)
+|-.+|.+.|. ..|..||..|+...+ +...+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667776654 369999999874332 34567777777754
No 117
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=40.93 E-value=12 Score=29.26 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=26.8
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcccCCC----ccccchhhhhhccC
Q 047854 23 LLTEHVNLLGE-------GRWSSVARSAGLNRS----GKSCRLRWVNYLRP 62 (259)
Q Consensus 23 ~L~~lV~~~g~-------~~W~~IA~~l~~gRt----~~Qcr~Rw~~~L~p 62 (259)
+|-.+|...|. ..|..||..|+...+ +..++..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35566666654 369999999874333 24667778887765
No 118
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=40.20 E-value=24 Score=29.28 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=21.4
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCCCChhhhh
Q 047854 9 QGWRKGPWTPEEDKLLT--------EHVNLLGEGRWSSVA 40 (259)
Q Consensus 9 p~~rkg~WT~EED~~L~--------~lV~~~g~~~W~~IA 40 (259)
|.-..|-||+|+|+.|. .++++|| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 56678999999998874 5666776 44444
No 119
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=39.01 E-value=13 Score=29.76 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.4
Q ss_pred hhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHHH
Q 047854 36 WSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIIIE 79 (259)
Q Consensus 36 W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll~ 79 (259)
-..||.++. |+|+.+||..|. ....+|+||++.|.+
T Consensus 119 c~~va~~i~-gkt~eeir~~f~-------I~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 119 CKTVANMIK-GKTPEEIRKTFN-------IKNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHHS-SCCHHHHHHHTT-------CCCCSCTTHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC-------CCCCCCHHHHHHHHH
Confidence 467888998 999999999874 234599999987654
No 120
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=38.22 E-value=46 Score=26.05 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=23.9
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 83 LWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 83 ~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
..|-...+||..+ |-|...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 88999999887666554
No 121
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=38.21 E-value=13 Score=30.30 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=28.6
Q ss_pred hhhhhhhcccCCCccccchhhhhhccCCCcCCCCCHHhHHHHH
Q 047854 36 WSSVARSAGLNRSGKSCRLRWVNYLRPGLKRGQLTPQEEGIII 78 (259)
Q Consensus 36 W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~l~k~~WT~eED~~Ll 78 (259)
-..||.++. |+|+.++|..|. ...-+|+||++.+.
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~-------I~nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN-------IVNDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT-------CCCCCCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC-------CCCCCCHHHHHHHH
Confidence 678999998 999999999774 23459999998864
No 122
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=36.89 E-value=50 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCC--------CHHHHHhhC--CCC---CHHHHHHHHHHhhhc
Q 047854 75 GIIIELHALWGN--------KWSTIARYL--PGR---TDNEIKNYWRTHFKK 113 (259)
Q Consensus 75 ~~Ll~~v~~~G~--------~W~~Ia~~l--~gR---T~~qcknrw~~~lkk 113 (259)
-.|..+|.+.|+ .|..|+..| +.. ....+|..|.++|.+
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 346777778774 699999988 222 257889999888876
No 123
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.95 E-value=60 Score=22.61 Aligned_cols=47 Identities=36% Similarity=0.371 Sum_probs=35.5
Q ss_pred CCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccccc
Q 047854 68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSS 117 (259)
Q Consensus 68 ~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~~ 117 (259)
..|+.|-+.| .++ ..|..-.+||+.+ |-|...|+.+....+++....
T Consensus 21 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 21 QLTPRERDIL-KLI-AQGLPNKMIARRL-DITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GSCHHHHHHH-HHH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHTTCS
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHcCC
Confidence 3666665554 444 5788899999999 899999999988887775443
No 124
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=35.44 E-value=25 Score=25.72 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=25.5
Q ss_pred HHHHHHHcC--------CCHHHHHhhCCC-C---CHHHHHHHHHHhhhc
Q 047854 77 IIELHALWG--------NKWSTIARYLPG-R---TDNEIKNYWRTHFKK 113 (259)
Q Consensus 77 Ll~~v~~~G--------~~W~~Ia~~l~g-R---T~~qcknrw~~~lkk 113 (259)
|..+|.+.| +.|.+|+..|.- . ....+|..|.++|.+
T Consensus 41 Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 41 LSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 666666665 469999997722 1 256888888777654
No 125
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=35.39 E-value=58 Score=24.37 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=29.7
Q ss_pred CHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 047854 70 TPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKN 105 (259)
Q Consensus 70 T~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qckn 105 (259)
++.-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667778888899999999999999 888887766
No 126
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.36 E-value=51 Score=23.69 Aligned_cols=45 Identities=27% Similarity=0.187 Sum_probs=34.5
Q ss_pred CCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhccc
Q 047854 68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEK 115 (259)
Q Consensus 68 ~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~ 115 (259)
..|+.|-+.|. ++ ..|..-.+||..+ |-|...|+.+....+++..
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHc
Confidence 36666655544 45 7788899999999 8899999999888777643
No 127
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=35.07 E-value=16 Score=28.34 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=25.9
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcccCCC---ccccchhhhhhccC
Q 047854 23 LLTEHVNLLGE-------GRWSSVARSAGLNRS---GKSCRLRWVNYLRP 62 (259)
Q Consensus 23 ~L~~lV~~~g~-------~~W~~IA~~l~~gRt---~~Qcr~Rw~~~L~p 62 (259)
+|-.+|.+.|. ..|..||..|+...+ +..++..|.++|.|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 35556666544 369999999874432 24667777777754
No 128
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=35.04 E-value=63 Score=24.19 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 73 ED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
.+..++.++...|-...+||..+ |-|...|+.+.....++.
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45566777777888999999999 899999999877666553
No 129
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=34.73 E-value=63 Score=21.25 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 67 GQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 67 ~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
...|+.|-+.|.. + ..|..-.+||..+ |-|...|+.+.....++...
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHCC
Confidence 3467766655544 4 5677899999999 88999999998887776443
No 130
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=33.08 E-value=21 Score=27.69 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=25.8
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcccCCC---ccccchhhhhhccC
Q 047854 23 LLTEHVNLLGE-------GRWSSVARSAGLNRS---GKSCRLRWVNYLRP 62 (259)
Q Consensus 23 ~L~~lV~~~g~-------~~W~~IA~~l~~gRt---~~Qcr~Rw~~~L~p 62 (259)
+|-.+|.+.|. ..|..||..|+...+ +...+..|.++|.|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 45566666654 369999999874332 23566777777654
No 131
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=32.85 E-value=63 Score=25.65 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHHHcCC--------CHHHHHhhC--CCC---CHHHHHHHHHHhhhc
Q 047854 76 IIIELHALWGN--------KWSTIARYL--PGR---TDNEIKNYWRTHFKK 113 (259)
Q Consensus 76 ~Ll~~v~~~G~--------~W~~Ia~~l--~gR---T~~qcknrw~~~lkk 113 (259)
.|..+|.+.|+ .|..|+..| +.. ....+|..|.++|.+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 36677777773 699999988 222 256889999888876
No 132
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.84 E-value=86 Score=19.88 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 74 EGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 74 D~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
+..++.+ ...|..-.+||..+ |-|...|+.+....+++...
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHHCC
Confidence 3455566 35677889999999 89999999998888777444
No 133
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=32.75 E-value=48 Score=26.11 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=35.2
Q ss_pred HhHHHHHHHHHHcCC-CHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 72 QEEGIIIELHALWGN-KWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 72 eED~~Ll~~v~~~G~-~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
+-|..|+.+..+.|. .+..||+.+ |-|...|+.|.+.+...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 567888888887764 599999999 99999999999888665
No 134
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.56 E-value=81 Score=22.56 Aligned_cols=49 Identities=27% Similarity=0.243 Sum_probs=37.3
Q ss_pred cCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 65 KRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 65 ~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
.....|+.|-+.|.-++ .|..-.+||..| +-|...|+.+....+++...
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHTTC
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHCC
Confidence 34467887776665444 788899999999 89999999999888887543
No 135
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=31.74 E-value=34 Score=28.34 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCCcCCCCCHHhHHHHH
Q 047854 62 PGLKRGQLTPQEEGIII 78 (259)
Q Consensus 62 p~l~k~~WT~eED~~Ll 78 (259)
|....|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999884
No 136
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=31.52 E-value=46 Score=26.47 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-------CChhhhhhhcccCCC----ccccchhhhhhccC
Q 047854 23 LLTEHVNLLGE-------GRWSSVARSAGLNRS----GKSCRLRWVNYLRP 62 (259)
Q Consensus 23 ~L~~lV~~~g~-------~~W~~IA~~l~~gRt----~~Qcr~Rw~~~L~p 62 (259)
+|-.+|.+.|. ..|..||..|+...+ +..++..|.++|.|
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34555665554 369999999874332 34678888888876
No 137
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.91 E-value=68 Score=25.79 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 75 GIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 75 ~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
..++.+....|-...+||+.+ |-|...|+.+....+++
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 334444444577899999999 89999998887666554
No 138
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.86 E-value=59 Score=24.73 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 047854 74 EGIIIELHALWGNKWSTIARYLPGRTDNEIKN 105 (259)
Q Consensus 74 D~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qckn 105 (259)
|..|..+....|..|..+|+.| |=|..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788889999999999999 777776655
No 139
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=30.26 E-value=68 Score=24.53 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=26.8
Q ss_pred CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 047854 66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKN 105 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qckn 105 (259)
...=|++ .|..++...|..|..+|+.| |=|..+|..
T Consensus 19 ~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 19 NSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp GSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred cCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3344444 46666788999999999999 788877755
No 140
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.78 E-value=59 Score=24.37 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=23.1
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 83 LWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 83 ~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
..|-...+||+.+ |-|...|+.+....+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3466789999988 88898888887666554
No 141
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=29.13 E-value=64 Score=24.61 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=28.2
Q ss_pred CCcCCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 047854 63 GLKRGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKN 105 (259)
Q Consensus 63 ~l~k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qckn 105 (259)
.+....=|++ .|..++...|..|..+|+.| |=|..+|..
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred hhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3334444544 46666788999999999999 788877755
No 142
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=28.47 E-value=99 Score=20.41 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHH
Q 047854 71 PQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWR 108 (259)
Q Consensus 71 ~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~ 108 (259)
.-|...|.+++..++++.+..|+.+ |=+...+..+-+
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~rklk 54 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 3477788899999999999999988 666666655443
No 143
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=27.30 E-value=2.1e+02 Score=21.88 Aligned_cols=93 Identities=17% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhh------ccCCCc----CCCCCHHhHHHHHHHHHH
Q 047854 14 GPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNY------LRPGLK----RGQLTPQEEGIIIELHAL 83 (259)
Q Consensus 14 g~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~------L~p~l~----k~~WT~eED~~Ll~~v~~ 83 (259)
.+.|.++-..++.++. .|. .-..||+.++ .+...++ ||.+. +.+... ....++++...|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689998888888874 565 7899999986 4444333 33322 222211 234788888888888766
Q ss_pred cC-CCHHHHHhhC---------CCCCHHHHHHHHHHhh
Q 047854 84 WG-NKWSTIARYL---------PGRTDNEIKNYWRTHF 111 (259)
Q Consensus 84 ~G-~~W~~Ia~~l---------~gRT~~qcknrw~~~l 111 (259)
.. -.-..|+..+ ..-+...|....+...
T Consensus 99 ~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 99 NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 43 2233444433 1345555555444433
No 144
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=26.89 E-value=1.9e+02 Score=21.19 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhcc------CCCcCCCCCHHhHHHHHHHHHHcCC
Q 047854 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLR------PGLKRGQLTPQEEGIIIELHALWGN 86 (259)
Q Consensus 13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~------p~l~k~~WT~eED~~Ll~~v~~~G~ 86 (259)
....|.++-..++.++. -|. .-..||+.++ .+...++ ||..... +.......|++++..|+.+...-.-
T Consensus 4 ~~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCC
T ss_pred cccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 45688888888887774 455 6899999986 4444443 2322211 1112235788888888877333223
Q ss_pred CHHHHHhhCCC--CCHHHHHHHHH
Q 047854 87 KWSTIARYLPG--RTDNEIKNYWR 108 (259)
Q Consensus 87 ~W~~Ia~~l~g--RT~~qcknrw~ 108 (259)
.=..|+..| | -+...|....+
T Consensus 79 s~~~i~~~l-g~~~s~~tV~r~l~ 101 (141)
T 1u78_A 79 TARDIRNEL-QLSASKRTILNVIK 101 (141)
T ss_dssp CHHHHHHHT-TCCSCHHHHHHHHH
T ss_pred CHHHHHHHH-CCCccHHHHHHHHH
Confidence 457888888 4 56666665543
No 145
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=26.81 E-value=66 Score=22.66 Aligned_cols=45 Identities=24% Similarity=0.088 Sum_probs=34.5
Q ss_pred CCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 69 LTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 69 WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
.|+.|-..| .++ ..|..-.+||..| |-|...|+.+....+++...
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHCC
Confidence 556665554 444 5788899999999 89999999998888777544
No 146
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=25.99 E-value=1e+02 Score=17.88 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=27.9
Q ss_pred CCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHH
Q 047854 68 QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107 (259)
Q Consensus 68 ~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw 107 (259)
..++++-..++.++ .-|.....||+.| |-+...|..+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45666666666665 4577899999999 78888877654
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.60 E-value=1.7e+02 Score=21.28 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=37.4
Q ss_pred CCCCCHHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhcccc
Q 047854 66 RGQLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKS 116 (259)
Q Consensus 66 k~~WT~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk~~~ 116 (259)
....|+.|-+.|.- + ..|..-.+||..| +-|...|+.+....+++...
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHHCC
Confidence 45678877766644 3 3688899999999 88999999998888877544
No 148
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.31 E-value=1.1e+02 Score=21.79 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=28.5
Q ss_pred HHhHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHH
Q 047854 71 PQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYW 107 (259)
Q Consensus 71 ~eED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw 107 (259)
.-|...|.+++..++++-+..|+.| |-+...+..+-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rkl 85 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAKL 85 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHHH
Confidence 3477788899999999999999999 77766665543
No 149
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=25.20 E-value=31 Score=26.89 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=23.5
Q ss_pred HcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 83 LWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 83 ~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
..|-...+||..+ |-|...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466788999999 88999999887666554
No 150
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.83 E-value=1.1e+02 Score=22.96 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 73 EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 73 ED~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
.+..++.++...|..-.+||..+ |-|...|+.+.....++
T Consensus 26 ~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 26 KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556667767889999999999 99999999987766655
No 151
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=22.77 E-value=1.4e+02 Score=22.77 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhc
Q 047854 72 QEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKK 113 (259)
Q Consensus 72 eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk 113 (259)
+-|..|+.++...| -.+++||+.+ |-|...|..+.+.+...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44667778777766 4699999999 88999999999887665
No 152
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.82 E-value=1.1e+02 Score=24.38 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=34.9
Q ss_pred HHhHHHHHHHHHHcC-CCHHHHHhhCCCCCHHHHHHHHHHhhhcc
Q 047854 71 PQEEGIIIELHALWG-NKWSTIARYLPGRTDNEIKNYWRTHFKKE 114 (259)
Q Consensus 71 ~eED~~Ll~~v~~~G-~~W~~Ia~~l~gRT~~qcknrw~~~lkk~ 114 (259)
++-|..|+.++.+.| ..+++||+.+ |-|...|..|.+.+....
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 355777888887776 4599999999 889999999998887653
No 153
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.03 E-value=42 Score=26.49 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhcccCCCccccchhhhhhccCC
Q 047854 19 EEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPG 63 (259)
Q Consensus 19 EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr~Rw~~~L~p~ 63 (259)
+-|.+|+.++...+.-.+..||+.++ =+...|+.|..+....+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45788889988888878999999995 77778998887665443
No 154
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=20.81 E-value=1e+02 Score=22.90 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCHHHHHhhCCCCCHHHHHH
Q 047854 74 EGIIIELHALWGNKWSTIARYLPGRTDNEIKN 105 (259)
Q Consensus 74 D~~Ll~~v~~~G~~W~~Ia~~l~gRT~~qckn 105 (259)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4556666777899999999999 888887766
No 155
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.37 E-value=2.8e+02 Score=20.79 Aligned_cols=79 Identities=19% Similarity=0.119 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhcccCCCccccc---hhhhhh--ccCCCc----CCCCCHHhHHHHHHHHHH
Q 047854 13 KGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCR---LRWVNY--LRPGLK----RGQLTPQEEGIIIELHAL 83 (259)
Q Consensus 13 kg~WT~EED~~L~~lV~~~g~~~W~~IA~~l~~gRt~~Qcr---~Rw~~~--L~p~l~----k~~WT~eED~~Ll~~v~~ 83 (259)
..+.|.++-..++.++. .|. .-..||+.++ .+...++ .+|... +.+... ....++++...|++++.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 35689999888888874 465 6899999986 4443333 233221 222211 234788888888888876
Q ss_pred cC-CCHHHHHhhC
Q 047854 84 WG-NKWSTIARYL 95 (259)
Q Consensus 84 ~G-~~W~~Ia~~l 95 (259)
.. -.-..|+..+
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 53 2233454433
Done!