BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047857
(220 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYF--------------KAGHSKDLAAA 127
A+++TS G I +LF P+TV+ F + GY+ + G
Sbjct: 24 AIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMG 83
Query: 128 DEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVV 185
E G+ + ++ +H+ + + + ++ G + +IT P P L++K VFGRV
Sbjct: 84 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVT 143
Query: 186 KGEDVVQEIEEVDTDEHY-QPKSDVGIINVTLK 217
KG +VVQ I V + +P DV IIN+T+K
Sbjct: 144 KGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 38/170 (22%)
Query: 76 FDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLC------------------------ 111
FD+ A+ N G ++ ELF D P+T + F LC
Sbjct: 31 FDI---AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 112 ------QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFEL 164
Q G F G+ + E G + + AF++ + KD+ G +
Sbjct: 88 VKDFMVQGGDFSEGNGR----GGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQF 143
Query: 165 YITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINV 214
+ITT P P L+ +VFG+V+ G++VV+EIE TD +P ++V I++
Sbjct: 144 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 193
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 38/170 (22%)
Query: 76 FDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLC------------------------ 111
FD+ A+ N G ++ ELF D P+T + F LC
Sbjct: 14 FDI---AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 112 ------QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFEL 164
Q G F G+ + E G + ++ F++ + KD+ G +
Sbjct: 71 VKDFMVQGGDFSEGNGR----GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 165 YITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINV 214
+ITT P P L+ +VFG+V+ G++VV+EIE TD +P ++V I++
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 176
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 38/170 (22%)
Query: 76 FDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLC------------------------ 111
FD+ A+ N G ++ ELF D P+T + F LC
Sbjct: 14 FDI---AINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 112 ------QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFEL 164
Q G F G+ + E G + ++ F++ + KD+ G +
Sbjct: 71 VKDFMVQGGDFSEGNGR----GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQF 126
Query: 165 YITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINV 214
+ITT P P L+ +VFG+V+ G++VV+EIE TD +P ++V I++
Sbjct: 127 FITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC 176
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 27/153 (17%)
Query: 89 GYIIVELFKDGSPETVDKFIDLCQ------------------------KGYFKAG--HSK 122
G I++EL+ D +P T + F+ LC K + G +K
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 123 DLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVF 181
E G + E F++ K ++ G + +ITT P P LN+ +VF
Sbjct: 81 GDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVF 140
Query: 182 GRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINV 214
G+VV G++VV +IE + T+ +P +DV I+N
Sbjct: 141 GKVVSGQEVVTKIEYLKTNSKNRPLADVVILNC 173
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 35/157 (22%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC------------------------------QKGYFKA 118
G I+ +LF D P+T F+ LC Q G F
Sbjct: 34 GRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSE 93
Query: 119 GHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDK 177
G+ K E G + + AF++ + K + G + +ITT P P L+
Sbjct: 94 GNGK----GGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGV 149
Query: 178 LIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINV 214
+VFG V+ G +V+++IE + TD +P +DV +I+
Sbjct: 150 HVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDC 186
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 79 PGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHS----KDL---AAADEWT 131
P + L TS G I++EL+ +P+T F +L ++GY+ KD T
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 132 SRG-------KIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFG 182
RG + +L K I + + D+ G + ++T AP L+ K +FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 183 RVVKGEDVVQEIEEVDTDEHYQPKSDVGII 212
RV +G +V + V+T+ +P DV II
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 79 PGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHS----KDL---AAADEWT 131
P + L TS G I++EL+ +P+T F +L ++GY+ KD T
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 132 SRG-------KIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFG 182
RG + +L K I + + D+ G + ++T AP L+ K +FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 183 RVVKGEDVVQEIEEVDTDEHYQPKSDVGII 212
RV +G +V + V+T+ +P DV II
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 79 PGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHS----KDL---AAADEWT 131
P + L TS G I++EL+ +P+T F +L ++GY+ KD T
Sbjct: 11 PPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT 70
Query: 132 SRG-------KIRSQLRTSPKHEAFMIGTVKS--KDSKGFELYITTAPIPDLNDKLIVFG 182
RG + +L K I + + D+ G + ++T AP L+ K +FG
Sbjct: 71 GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFG 130
Query: 183 RVVKGEDVVQEIEEVDTDEHYQPKSDVGII 212
RV +G +V + V+T+ +P DV II
Sbjct: 131 RVCQGIGMVNRVGMVETNSQDRPVDDVKII 160
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 16/158 (10%)
Query: 77 DLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYF--------------KAGHSK 122
+ P A++ T+ G I + LF +TV F GY+ + G
Sbjct: 3 NTPKSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPS 62
Query: 123 DLAAADEWTSRGKIRSQLRTSPKH-EAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIV 180
E + + H + FM+ ++ G + +ITT P P L+ K V
Sbjct: 63 GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 181 FGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKH 218
FG+V +G +V +IE+V TD+ +P D+ I+N+ + +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAG-HSKDL------AAADEWTSRG 134
L+T G I +E+F + +P+T + F+ LC Y+ +++ T RG
Sbjct: 3 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 135 -------KIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVV 185
K + KH + ++ + ++ G + +IT P L+ K VFG+V+
Sbjct: 63 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122
Query: 186 KGEDVVQEIEEVDTDEH-YQPKSDVGIINVTLKHA 219
G + + E+E++ +E Y+P +DV I ++T+ HA
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHIKDITI-HA 156
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 18/155 (11%)
Query: 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAG-HSKDL------AAADEWTSRG 134
L+T G I +E+F + +P+T + F+ LC Y+ +++ T RG
Sbjct: 9 VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
Query: 135 -------KIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVV 185
K + KH + ++ + ++ G + +IT P L+ K VFG+V+
Sbjct: 69 GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 128
Query: 186 KGEDVVQEIEEVDTDEH-YQPKSDVGIINVTLKHA 219
G + + E+E++ +E Y+P +DV I ++T+ HA
Sbjct: 129 DGLETLDELEKLPVNEKTYRPLNDVHIKDITI-HA 162
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 19/144 (13%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHS-----KD-LAAADEWTSR---GKIR 137
G I++ LF + P+TV+ F+ L +KGY G KD + ++T+R G +
Sbjct: 22 GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMS 81
Query: 138 SQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
T P K + + IG V D+ G + +IT L+ K +VFG+V+ G
Sbjct: 82 IYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMT 141
Query: 190 VVQEIEEVDTDEHYQPKSDVGIIN 213
VV IE TD H +P +D I+N
Sbjct: 142 VVHSIELQATDGHDRPLTDCTIVN 165
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC-----------------QKGYFKAGHSKDLAAADEWT 131
G I + LF +P T + F LC Q + G + +
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 132 SRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDV 190
G+ + + KH + + ++ G + +ITTAP P L+ + +VFG+V+ G DV
Sbjct: 86 IYGEKFADENLNVKHFVGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDV 145
Query: 191 VQEIEEVDTDEHYQPKSDVGII 212
V IE+ T+ H +P V I+
Sbjct: 146 VLRIEKTKTNSHDRPVKPVKIV 167
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 30/162 (18%)
Query: 76 FDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLC--QKGYFKAG-------------- 119
FD+ ++ T G I +ELF D P T + F LC +KG ++G
Sbjct: 24 FDI---SIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80
Query: 120 -----HSKDLAAADEWTSRGKIRSQLRTSP---KHEA-FMIGTVKS-KDSKGFELYITTA 169
D D S+ R H+A F++ + ++ G + +ITT
Sbjct: 81 PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Query: 170 PIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 211
P P L+ K +VFG+V++G +VV+ IE+ + ++ +P V I
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-QNGKPTKSVCI 181
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYF--------------KAGHSKDLA 125
G+ L+T+KG + +EL D +P+T + FI LC+K Y+ + G
Sbjct: 20 GYVRLHTNKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTG 79
Query: 126 AADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGR 183
E + + R + H I ++ + +S + +IT L+ K +FGR
Sbjct: 80 TGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 139
Query: 184 VVKGEDVVQEIEEVDTDEHYQPKSD 208
VV G DV+ +E V++D PK+D
Sbjct: 140 VVGGFDVLTAMENVESD----PKTD 160
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 25/147 (17%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAG------------HSKDLAAADEWTSRG 134
G I++ LF P+TV+ F+ L +KGY G D+ D G
Sbjct: 30 GRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGD---GTG 86
Query: 135 KIRSQLRTSP----KHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVK 186
+ T P K + + IG V D+ G + +IT L+ K +VFG+V+
Sbjct: 87 GVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVID 146
Query: 187 GEDVVQEIEEVDTDEHYQPKSDVGIIN 213
G VV IE TD H +P ++ IIN
Sbjct: 147 GMTVVHSIELQATDGHDRPLTNCSIIN 173
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 18/141 (12%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAG------------HSKDLAAADEWTSRG 134
G +++ LF + P+TV+ F L + G+ G D D +
Sbjct: 20 GRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKS 79
Query: 135 KIRSQLRTSPKHEAFMIGTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDV 190
++ +G V +S G + ++TTAP P L+ + +VFG+VV+G DV
Sbjct: 80 IYGTRFDDENLKIKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDV 139
Query: 191 VQEIEEVDTDEHYQPKSDVGI 211
V+++E T + +PK V I
Sbjct: 140 VKKVENTKTGLNDKPKKAVKI 160
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC-----------------QKGYFKAGHSKDLAAADEWT 131
G I + LF +P T + F LC Q + G + +
Sbjct: 26 GRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS 85
Query: 132 SRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDV 190
G+ + + KH + + ++ G + +ITTAP P L+ +VFG+V+ G DV
Sbjct: 86 IYGEKFADENLNVKHFVGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGMDV 145
Query: 191 VQEIEEVDTDEHYQPKSDVGII 212
V IE+ T+ H +P V I+
Sbjct: 146 VLRIEKTKTNSHDRPVKPVKIV 167
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 34/154 (22%)
Query: 76 FDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLC--QKGYFKAG---HSKD------- 123
FD+ ++ N + G I++EL+ D P+T + F LC +KG ++G H K
Sbjct: 12 FDI---SIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 124 ---LAAADEWTSRGKI---RSQLRTSPKHEAFM--------IGTVK----SKDSKGFELY 165
+ ++T RG S T+ + E+F +G + ++ G + +
Sbjct: 69 PNFMIQGGDFT-RGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFF 127
Query: 166 ITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
I TA P L+ K +VFGRV+ G DVV+++E + +
Sbjct: 128 ICTAATPWLDGKHVVFGRVIDGLDVVKKVERLGS 161
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPK- 145
G ++ +L+ D P+T + F LC +KG+ AG D G + T K
Sbjct: 16 GRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGKS 75
Query: 146 ----------------HEAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
+ ++ G + +ITT P P L+ K +VFG VV G D
Sbjct: 76 IYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYD 135
Query: 190 VVQEIEEVDT 199
+V+++E + +
Sbjct: 136 IVKKVESLGS 145
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 19/140 (13%)
Query: 89 GYIIVELFKDGSPETVDKFIDLCQK----GYFKAGHSK----------DLAAADEWTSR- 133
G I++ LF P+T FI+L +K GY + + D D R
Sbjct: 21 GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRS 80
Query: 134 --GKIRSQLRTSPKH--EAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
G+ + KH ++ D+ G + +ITT P L+ + +VFG++++G D
Sbjct: 81 IYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMD 140
Query: 190 VVQEIEEVDTDEHYQPKSDV 209
VV++IE+ + +PK DV
Sbjct: 141 VVRKIEQTEKLPGDRPKQDV 160
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 30/160 (18%)
Query: 76 FDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHSKDLAAADEWTSR-- 133
FD+ ++ N++ G II ELF D +P T + F LC G K+L + R
Sbjct: 8 FDI---SIDNSNAGRIIFELFSDITPRTCENFRALCT-GEKIGSRGKNLHYKNSIFHRII 63
Query: 134 ----------------------GKIRSQLRTSPKHE--AFMIGTVKSKDSKGFELYITTA 169
G+ + + KH+ + ++ + +IT
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 170 PIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDV 209
P P L+ K +VFG+V++G +VV+E+E+ Y +S V
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVV 163
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 16/163 (9%)
Query: 66 EDDAYAVSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYF--------- 116
E AY K G+ + T+ G VEL+ SP+T F LC+ G++
Sbjct: 25 EKIAYYKMKGHTERGYITIYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVI 84
Query: 117 -----KAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTA 169
+ G + ++ KH I ++ + ++ + +IT A
Sbjct: 85 PNFVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLA 144
Query: 170 PIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGII 212
P+P L+ K +F RV K ++ I V T +P D+ I+
Sbjct: 145 PLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKIL 187
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 19/140 (13%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +I LF P+TVD F+ L +KG+ D G T K
Sbjct: 20 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 79
Query: 147 --------EAFMI-----GTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + G V KD+ G + +ITT L+ K +VFG+V++G +
Sbjct: 80 IYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGME 139
Query: 190 VVQEIEEVDTDEHYQPKSDV 209
VV+++E TD +P DV
Sbjct: 140 VVRKVESTKTDSRDKPLKDV 159
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 19/140 (13%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +I LF P+TVD F+ L +KG+ D G T K
Sbjct: 30 GRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKS 89
Query: 147 --------EAFMI-----GTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + G V KD+ G + +ITT L+ K +VFG+V++G +
Sbjct: 90 IYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGME 149
Query: 190 VVQEIEEVDTDEHYQPKSDV 209
VV+++E TD +P DV
Sbjct: 150 VVRKVESTKTDSRDKPLKDV 169
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 20/151 (13%)
Query: 86 TSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAG-HSKDLAA----ADEWTSRGK----- 135
T+ G + ELF P+ F+ L GY+K K++ + T GK
Sbjct: 23 TNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPTGTGKGGESI 82
Query: 136 --------IRSQLRTSPKHEAFMI--GTVKSKDSKGFELYITTAPIPDLNDKLIVFGRVV 185
I +L+ + M G K ++ G + +IT + +P LN + ++FG+++
Sbjct: 83 YGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLI 142
Query: 186 KGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 216
G + + +E +D+ ++P ++ I ++ +
Sbjct: 143 DGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 76 FDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHSKDLAAADEWTSR-- 133
FD+ ++ N++ G II ELF D +P T + F LC G K+L + R
Sbjct: 8 FDI---SIDNSNAGRIIFELFSDITPRTCENFRALCT-GEKIGSRGKNLHYKNSIFHRII 63
Query: 134 ----------------------GKIRSQLRTSPKHE--AFMIGTVKSKDSKGFELYITTA 169
G+ + + KH+ + ++ + IT
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 170 PIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDV 209
P P L+ K +VFG+V++G +VV+E+E+ Y +S V
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVV 163
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +++ LF P+TVD F+ L +KG+ D G T K
Sbjct: 27 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKS 86
Query: 147 --------EAFMI-----GTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + G V KD+ G + +ITT L+ K +VFG+V++G +
Sbjct: 87 IYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGME 146
Query: 190 VVQEIEEVDTDEHYQPKSDVGIINV 214
VV+++E TD +P DV I +
Sbjct: 147 VVRKVETTKTDGRDKPLKDVTIADC 171
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +++ LF P+TVD F+ L +KG+ D G T K
Sbjct: 27 GRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKS 86
Query: 147 --------EAFMI-----GTVK----SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + G V KD+ G + +ITT L+ K +VFG+V++G +
Sbjct: 87 IYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGME 146
Query: 190 VVQEIEEVDTDEHYQPKSDVGIINV 214
VV+++E TD +P DV I +
Sbjct: 147 VVRKVETTKTDGRDKPLKDVTIADC 171
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 85 NTSKGYIIVELFKDGSPETVDKFIDLCQK----GYFKAGHSK----------DLAAADEW 130
N G I++EL D P T + F LC GY + D D
Sbjct: 21 NGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGT 80
Query: 131 TSR---GKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVV 185
+ G+ +HE F + ++ + ++ G + +I T L+ K +VFGRVV
Sbjct: 81 GGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVV 140
Query: 186 KGEDVVQEIEEVDT 199
G++VV+++E V +
Sbjct: 141 DGQNVVKKMESVGS 154
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYF------KAGHSKDLAAADEWTSR 133
G+ + T++G + +EL D +P D F+ LC YF + + + +
Sbjct: 7 GYLRIVTTQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQGGRAELRQ 66
Query: 134 GKIRSQLRTSPK--------------------HEAFMIGTVKS--KDSKGFELYITTAPI 171
+ +++ SP+ H+ + ++ + K S E +IT
Sbjct: 67 PSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSC 126
Query: 172 PDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
LN+K +FGRVV G DV+++ E+++T
Sbjct: 127 EHLNNKHTIFGRVVGGLDVLRQWEKLET 154
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 27/138 (19%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKG---------YFKAGH-----SKDLAAADEWTS 132
G I++ELF D P+T + F LC +KG +FK K + ++++
Sbjct: 30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89
Query: 133 RGKIRSQLRTSPKHE-----------AFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVF 181
+ + K E + ++ G + +ITT P P L+ K +VF
Sbjct: 90 QNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVF 149
Query: 182 GRVVKGEDVVQEIEEVDT 199
G+V+KG V + +E V+
Sbjct: 150 GQVIKGMGVAKILENVEV 167
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 23/159 (14%)
Query: 81 HAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHSKDLAAADEWTSRGKIRSQL 140
H +L TS G I +EL K +P +V F+D G++ + G
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ 65
Query: 141 RTSP----KHEA----------FMIGTVKSKDSKGFELYITTAPIPDLND-----KLIVF 181
+ P K+EA + KDS + +I A L+ VF
Sbjct: 66 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 182 GRVVKGEDVVQEIEEVDTDE--HYQ--PKSDVGIINVTL 216
G+VVKG DV +I +V T + YQ P V I++ T+
Sbjct: 126 GKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 19/138 (13%)
Query: 81 HAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHSKDLAAADEWTSRGKIRSQL 140
H +L TS G I +EL K +P +V F+D G++ + G
Sbjct: 6 HVLLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQ 65
Query: 141 RTSP----KHEA----------FMIGTVKSKDSKGFELYITTAPIPDLND-----KLIVF 181
+ P K+EA + KDS + +I A L+ VF
Sbjct: 66 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 182 GRVVKGEDVVQEIEEVDT 199
G+VVKG DV +I +V T
Sbjct: 126 GKVVKGMDVADKISQVPT 143
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIE 195
++ G + +ITT P L+ K +VFG V++G D+V+++E
Sbjct: 106 NTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 143
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIE 195
++ G + +ITT P L+ K +VFG V++G D+V+++E
Sbjct: 105 NTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVE 142
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 84 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK 117
+T+ G I+++ F D +PETV F+D C++G++
Sbjct: 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYN 37
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 84 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK 117
+T+ G I+++ F D +PETV F+D C++G++
Sbjct: 4 FHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYN 37
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 65/165 (39%), Gaps = 30/165 (18%)
Query: 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQ--------------KGYFKAG-------- 119
A L+T++G I + LF + +P+TV F+ L Q G F G
Sbjct: 26 ATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQ 85
Query: 120 ----HSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPD 173
D K + + + +++ + + G + +IT P
Sbjct: 86 GFMIQGGDPTGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 145
Query: 174 LNDKLIVFGRVVKGED--VVQEIEEVDTDEHYQPKSDVGIINVTL 216
LN + +FG V+ E VV+ I + TD + +P V I ++T+
Sbjct: 146 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 24/147 (16%)
Query: 89 GYIIVELFKDGSPETVDKFIDLCQKGYFKAGHS------------KD--LAAADEWTSRG 134
G + +ELF D P+T + F C + K G KD + D G
Sbjct: 25 GRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG 84
Query: 135 KIRSQLRTSP--------KHEA-FMIGTVKSKDS-KGFELYITTAPIPDLNDKLIVFGRV 184
+ + P +H A ++ S S G + +IT + L+ K +VFG++
Sbjct: 85 TGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKI 144
Query: 185 VKGEDVVQEIEEVDTDEHYQPKSDVGI 211
+ G V+++IE V T + +PK V I
Sbjct: 145 IDGLLVMRKIENVPTGPNNKPKLPVVI 171
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 23/148 (15%)
Query: 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYF--------------KAGHSKDLA 125
G +L T+ G I +EL+ +P+ FI LC + Y+ + G
Sbjct: 25 GKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTG 84
Query: 126 AADEWTS----RGKIRSQLRTSPKHEAFMIGTVKSKDSKGFELYITTAPIPDLNDKLIVF 181
+ E + + S+LR + + + S D+ G + + T +LN+K +F
Sbjct: 85 SGGESIYGAPFKDEFHSRLRFN-RRGLVAMANAGSHDN-GSQFFFTLGRADELNNKHTIF 142
Query: 182 GRVVKGEDVVQ--EIEEVDTDEHYQPKS 207
G+V G+ V + EVD D+ +P +
Sbjct: 143 GKVT-GDTVYNMLRLSEVDIDDDERPHN 169
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +++EL D P+T + F LC +KG+ G + G + T K
Sbjct: 19 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 78
Query: 147 --------EAFMIGTV---------KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + V ++ G + +I T L+ K +VFG V++G D
Sbjct: 79 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 138
Query: 190 VVQEIEE 196
VV++IE
Sbjct: 139 VVKKIES 145
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +++EL D P+T + F LC +KG+ G + G + T K
Sbjct: 17 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 76
Query: 147 --------EAFMIGTV---------KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + V ++ G + +I T L+ K +VFG V++G D
Sbjct: 77 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 136
Query: 190 VVQEIEE 196
VV++IE
Sbjct: 137 VVKKIES 143
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 19/127 (14%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +++EL D P+T + F LC +KG+ G + G + T K
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 147 --------EAFMIGTV---------KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + V ++ G + +I T L+ K +VFG V++G D
Sbjct: 78 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 137
Query: 190 VVQEIEE 196
VV++IE
Sbjct: 138 VVKKIES 144
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 19/130 (14%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G +++EL D P+T + F LC +KG+ G + G + T K
Sbjct: 18 GRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKS 77
Query: 147 --------EAFMIGTV---------KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + V ++ G + +I T L+ K +VFG V++G D
Sbjct: 78 IYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMD 137
Query: 190 VVQEIEEVDT 199
VV++IE +
Sbjct: 138 VVKKIESFGS 147
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 79 PGHAV-LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFKA---------------GHSK 122
PG V L+T+ G I +EL + +P+TV+ F++ +KG++ G
Sbjct: 2 PGSMVELHTNHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGGFEP 61
Query: 123 DLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKD--SKGFELYITTAPIPDLNDK--- 177
L + + I ++ K++ + I ++ D S + +I LN
Sbjct: 62 GLK---QKPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPT 118
Query: 178 -----LIVFGRVVKGEDVVQEIEEVDT 199
VFG+VV+G+D+V +I+ V T
Sbjct: 119 PQGWGYAVFGKVVEGQDIVDKIKAVKT 145
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 51/126 (40%), Gaps = 19/126 (15%)
Query: 89 GYIIVELFKDGSPETVDKFIDLC--QKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKH 146
G I +LF D P+T F LC +KG+ AG D G + T K
Sbjct: 16 GTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKS 75
Query: 147 --------EAFMIGTVK---------SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGED 189
E F + K ++ G + +ITT L+ K +VFG V+ G +
Sbjct: 76 IYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMN 135
Query: 190 VVQEIE 195
VV+ IE
Sbjct: 136 VVKAIE 141
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 38/146 (26%)
Query: 84 LNTSKGYIIVELFKDGSPETVDKF-----------------ID--LCQKGYFKAGHSKDL 124
L T+ G I ++LF D +PET F ID + Q G F+ G +
Sbjct: 4 LQTNHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGGFEPGMKQK- 62
Query: 125 AAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKD--SKGFELYIT---------TAPIPD 173
++R I+++ ++ + I ++ D S + +I TAP
Sbjct: 63 ------STRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAH 116
Query: 174 LNDKLIVFGRVVKGEDVVQEIEEVDT 199
VFG VV+G DVV I+ V T
Sbjct: 117 -GWGYAVFGEVVEGTDVVDRIKSVAT 141
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIE 195
++ G + ++ T L+ K +VFGRVV+G DVV+ +E
Sbjct: 113 NTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVE 150
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYF 116
G VL+TS G + VEL+ P F+ LC +GY+
Sbjct: 22 GKVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYY 58
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 159 SKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD 200
+ G + +IT L++K +VFG VV+G DVV +I + ++
Sbjct: 131 TNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE 172
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 86 TSKGYIIVELFKDGSPETVDKFIDLCQK----GYFKAGHSK----------DLAAADEWT 131
T G I+ LF P+T F +LC++ GY ++ + D +
Sbjct: 19 TKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTG 78
Query: 132 SR---GKIRSQLRTSPKHEAFMIGTVKSK--DSKGFELYITTAPIPDLNDKLIVFGRVV- 185
R G + S KH+ I ++ + ++ G + +ITTA L+ K +VFG V
Sbjct: 79 GRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVAD 138
Query: 186 -KGEDVVQEIEEVDT 199
K VV+EIE + +
Sbjct: 139 EKSYSVVKEIEALGS 153
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 125 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 166
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 147
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGED--VVQEIEEVDTDEH-YQPKSDVGII 212
++ G + +ITT L+ K +VFGR++ + ++++IE V + Y+PK + ++
Sbjct: 167 NTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVV 224
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 147
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 147
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 147
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 105 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 146
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 147
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 147
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 147
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ +E +
Sbjct: 114 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGS 155
>pdb|1BY7|A Chain A, Human Plasminogen Activator Inhibitor-2. Loop (66-98)
Deletion Mutant
pdb|1JRR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletionmutant] Complexed With Peptide Mimicking The
Reactive Center Loop
Length = 382
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 82 AVLNTSKGYIIVE----LFKDGSPETVDKFIDLCQKGYFKAGHSKD-LAAADEWTSRGKI 136
+ +N S G ++E LF + S +++I LCQK Y + D L A+E +R KI
Sbjct: 79 SAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEE--ARKKI 136
Query: 137 RSQLRTSPK 145
S ++T K
Sbjct: 137 NSWVKTQTK 145
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 125 AAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKGFELYITTAPIPDL 174
+A EW+S+ +I ++L A + +G +Y+T +P PD
Sbjct: 92 SAHSEWSSKNEIHAELN------AILFAAENGSSIEGATMYVTLSPCPDC 135
>pdb|2ARQ|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-Acetyl-Teaaagdggvmtgr-Oh
pdb|2ARR|A Chain A, Human Plasminogen Activator Inhibitor-2.[loop (66-98)
Deletion Mutant] Complexed With Peptide
N-acetyl-teaaagmggvmtgr-oh
Length = 382
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 82 AVLNTSKGYIIVE----LFKDGSPETVDKFIDLCQKGYFKAGHSKD-LAAADEWTSRGKI 136
+ +N S G ++E LF + S +++I LCQK Y + D L A+E +R KI
Sbjct: 79 SAINASTGNYLLESVNKLFGEKSASFREEYIRLCQKYYSSEPQAVDFLECAEE--ARKKI 136
Query: 137 RSQLRTSPK 145
S ++T K
Sbjct: 137 NSWVKTQTK 145
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ E +
Sbjct: 105 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGXNIVEAXERFGS 146
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIE 195
++ G + ++T L+ K +VFG V +G DV+++IE
Sbjct: 114 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 151
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIE 195
++ G + ++T L+ K +VFG V +G DV+++IE
Sbjct: 106 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 143
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIE 195
++ G + ++T L+ K +VFG V +G DV+++IE
Sbjct: 115 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIE 152
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ +VFG+V +G ++V+ +E +
Sbjct: 110 NTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS 151
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ K +VFG+V +G ++V+ ++ +
Sbjct: 105 NTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGS 146
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGS 147
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 158 DSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDT 199
++ G + +I TA L+ +VFG+V +G ++V+ +E +
Sbjct: 106 NTNGSQFFICTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGS 147
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 48 WSHSQRSNEQIGNESSTVEDDAYAVSKKFDLPGHAVLNTSKGYIIVE---LFKDGSPETV 104
W H + S ++ + ED + V + PG VL S G ++ L +DG T+
Sbjct: 6 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH-LTI 64
Query: 105 DKFIDLCQKGYFKAGHSKDLAA 126
D+ + C +SKD A
Sbjct: 65 DEAVFFCNLMDMVEHYSKDKGA 86
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 48 WSHSQRSNEQIGNESSTVEDDAYAVSKKFDLPGHAVLNTSKGYIIVE---LFKDGSPETV 104
W H + S ++ + ED + V + PG VL S G ++ L +DG T+
Sbjct: 7 WFHGKISGQEAVQQLQPPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVLHRDGH-LTI 65
Query: 105 DKFIDLCQKGYFKAGHSKDLAA 126
D+ + C +SKD A
Sbjct: 66 DEAVFFCNLXDXVEHYSKDKGA 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,100,155
Number of Sequences: 62578
Number of extensions: 236185
Number of successful extensions: 554
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 108
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)