Query 047857
Match_columns 220
No_of_seqs 199 out of 1383
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047857.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047857hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0881 Cyclophilin type pepti 100.0 3E-43 6.6E-48 264.4 9.2 141 77-217 7-163 (164)
2 cd01923 cyclophilin_RING cyclo 100.0 5.5E-41 1.2E-45 268.6 17.5 138 82-219 2-155 (159)
3 cd01928 Cyclophilin_PPIL3_like 100.0 6.2E-41 1.3E-45 266.7 16.8 137 80-216 1-153 (153)
4 cd01927 cyclophilin_WD40 cyclo 100.0 5.4E-40 1.2E-44 260.0 15.4 132 83-214 1-148 (148)
5 KOG0882 Cyclophilin-related pe 100.0 1.9E-40 4.2E-45 293.6 13.9 211 6-217 323-558 (558)
6 KOG0883 Cyclophilin type, U bo 100.0 5.5E-40 1.2E-44 286.0 15.8 148 72-219 270-433 (518)
7 COG0652 PpiB Peptidyl-prolyl c 100.0 1.6E-39 3.4E-44 257.7 15.2 134 82-218 2-158 (158)
8 cd01921 cyclophilin_RRM cyclop 100.0 2.4E-39 5.1E-44 260.9 16.3 137 83-219 1-161 (166)
9 cd01922 cyclophilin_SpCYP2_lik 100.0 5.2E-39 1.1E-43 253.8 15.0 130 83-213 1-146 (146)
10 KOG0884 Similar to cyclophilin 100.0 2.2E-39 4.9E-44 242.3 11.2 140 80-219 1-157 (161)
11 KOG0880 Peptidyl-prolyl cis-tr 100.0 3.9E-39 8.5E-44 258.9 13.4 136 82-218 47-203 (217)
12 PRK10903 peptidyl-prolyl cis-t 100.0 1E-37 2.2E-42 256.1 19.3 136 81-218 30-190 (190)
13 cd01925 cyclophilin_CeCYP16-li 100.0 1.8E-37 3.8E-42 251.1 17.7 140 80-219 6-162 (171)
14 KOG0546 HSP90 co-chaperone CPR 100.0 3.2E-38 7E-43 274.1 11.2 136 82-218 16-179 (372)
15 PRK10791 peptidyl-prolyl cis-t 100.0 1.1E-36 2.4E-41 244.7 16.4 135 82-218 2-164 (164)
16 PTZ00221 cyclophilin; Provisio 100.0 2.8E-35 6.1E-40 249.1 17.3 136 80-219 53-221 (249)
17 cd01920 cyclophilin_EcCYP_like 100.0 1.7E-35 3.8E-40 235.9 14.6 129 84-214 2-155 (155)
18 PLN03149 peptidyl-prolyl isome 100.0 6.4E-35 1.4E-39 238.9 17.2 131 86-217 30-186 (186)
19 cd01926 cyclophilin_ABH_like c 100.0 6.3E-35 1.4E-39 234.7 14.6 132 82-215 8-164 (164)
20 PTZ00060 cyclophilin; Provisio 100.0 1.3E-34 2.8E-39 236.6 15.8 135 82-218 23-183 (183)
21 KOG0415 Predicted peptidyl pro 100.0 6.3E-35 1.4E-39 252.0 12.9 140 80-219 1-164 (479)
22 cd00317 cyclophilin cyclophili 100.0 1.4E-33 3E-38 222.2 15.0 130 83-213 1-146 (146)
23 PF00160 Pro_isomerase: Cyclop 100.0 1.3E-33 2.7E-38 224.4 14.6 133 82-216 2-155 (155)
24 KOG0879 U-snRNP-associated cyc 100.0 1.9E-33 4.1E-38 213.8 10.8 133 82-215 18-175 (177)
25 KOG0885 Peptidyl-prolyl cis-tr 100.0 8.6E-33 1.9E-37 240.0 12.3 140 80-219 13-169 (439)
26 cd01924 cyclophilin_TLP40_like 100.0 7.1E-32 1.5E-36 219.1 13.9 124 85-219 3-176 (176)
27 KOG0111 Cyclophilin-type pepti 100.0 5.2E-30 1.1E-34 209.6 11.8 134 82-217 144-297 (298)
28 KOG0865 Cyclophilin type pepti 99.9 9E-25 2E-29 174.7 7.4 134 82-217 11-167 (167)
29 KOG0882 Cyclophilin-related pe 99.0 2.1E-10 4.6E-15 103.1 5.3 217 1-219 19-264 (558)
30 TIGR03268 methan_mark_3 putati 97.1 0.0017 3.7E-08 60.0 7.3 102 91-197 203-304 (503)
31 PRK00969 hypothetical protein; 97.0 0.002 4.4E-08 59.6 7.0 101 91-196 206-306 (508)
32 TIGR03268 methan_mark_3 putati 96.3 0.018 3.8E-07 53.4 8.3 107 87-199 373-498 (503)
33 COG4070 Predicted peptidyl-pro 95.9 0.013 2.8E-07 52.8 4.8 99 90-197 204-306 (512)
34 PRK00969 hypothetical protein; 95.6 0.05 1.1E-06 50.6 7.9 110 88-199 377-500 (508)
35 COG4070 Predicted peptidyl-pro 94.7 0.067 1.4E-06 48.4 5.6 23 90-112 377-399 (512)
36 PF12903 DUF3830: Protein of u 67.5 7.4 0.00016 30.7 3.5 24 88-111 7-30 (147)
37 COG1999 Uncharacterized protei 53.1 1.1E+02 0.0025 25.2 8.4 31 82-112 60-95 (207)
38 PF07423 DUF1510: Protein of u 51.2 13 0.00028 31.3 2.4 12 10-21 3-14 (217)
39 PF11119 DUF2633: Protein of u 47.7 32 0.0007 22.8 3.4 20 19-38 4-23 (59)
40 PF04126 Cyclophil_like: Cyclo 38.1 28 0.00062 26.2 2.4 101 82-197 3-114 (120)
41 PF13800 Sigma_reg_N: Sigma fa 37.2 22 0.00049 25.4 1.6 18 14-31 6-23 (96)
42 PF08415 NRPS: Nonribosomal pe 34.9 38 0.00081 21.9 2.3 27 185-213 4-30 (58)
43 PF08139 LPAM_1: Prokaryotic m 30.1 55 0.0012 17.9 2.0 11 25-35 8-18 (25)
44 PRK11372 lysozyme inhibitor; P 25.3 1.3E+02 0.0029 22.3 4.1 9 22-30 1-9 (109)
45 PF12911 OppC_N: N-terminal TM 25.1 1E+02 0.0023 19.3 3.1 27 10-36 5-31 (56)
46 PF12396 DUF3659: Protein of u 23.3 2.1E+02 0.0046 19.1 4.4 43 174-218 16-60 (64)
47 COG4594 FecB ABC-type Fe3+-cit 22.3 1.6E+02 0.0035 25.7 4.4 37 75-114 46-89 (310)
48 PRK03147 thiol-disulfide oxido 20.2 4E+02 0.0086 20.3 6.8 25 82-106 54-79 (173)
No 1
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-43 Score=264.41 Aligned_cols=141 Identities=28% Similarity=0.480 Sum_probs=135.4
Q ss_pred CCCceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCC
Q 047857 77 DLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRT 142 (220)
Q Consensus 77 ~~~~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~ 142 (220)
..+..|.++|++|.|++|||-+.||+||.||..|++.|||| ||||+|+|.++.+.++.+|.+|.+.
T Consensus 7 ~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~ 86 (164)
T KOG0881|consen 7 WQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHS 86 (164)
T ss_pred CCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhh
Confidence 34456999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEEe
Q 047857 143 SPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLK 217 (220)
Q Consensus 143 ~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~ 217 (220)
.|+|. .|.++||+ +||+||||||||+.+.+||||+||+||||..||+|+.++..+++|.++||+.+++|.++...
T Consensus 87 dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 87 DLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYPS 163 (164)
T ss_pred hhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeecC
Confidence 99999 99999999 99999999999999999999999999999999999999999999999999999999998764
No 2
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=5.5e-41 Score=268.61 Aligned_cols=138 Identities=25% Similarity=0.474 Sum_probs=129.3
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCCCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPKHE 147 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~ 147 (220)
|+++|+.|+|+||||++.||++|+||++||+.|||+ +||+.+++.++.+.++..+++|....++|.
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~~~iq~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~ 81 (159)
T cd01923 2 VRLHTNKGDLNLELHCDKAPKACENFIKLCKKGYYDGTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDEFKPNLSHD 81 (159)
T ss_pred EEEEEccccEEEEEeCCCChHHHHHHHHHHhcCccCCcEEEEEeCCcEEEecccCCCCCCCccccCCccCcccccCcCcC
Confidence 789999999999999999999999999999999999 889888777777777788888877778886
Q ss_pred -CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEEeeC
Q 047857 148 -AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKHA 219 (220)
Q Consensus 148 -~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~~d 219 (220)
+|+|+|++ ++++++|||||++++.|+||++|+|||+|++|||||++|++.+++++++|.++|+|.+|.|++|
T Consensus 82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~d 155 (159)
T cd01923 82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVD 155 (159)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeC
Confidence 99999998 7999999999999999999999999999999999999999999998999999999999999986
No 3
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=6.2e-41 Score=266.72 Aligned_cols=137 Identities=28% Similarity=0.568 Sum_probs=126.3
Q ss_pred ceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCC
Q 047857 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPK 145 (220)
Q Consensus 80 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~ 145 (220)
|.|+++|+.|+|+||||++.||++|+||++||+++||+ +||+.+++.++...++..+++|....++
T Consensus 1 m~v~l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~rv~~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~ 80 (153)
T cd01928 1 MSVTLHTNLGDIKIELFCDDCPKACENFLALCASGYYNGCIFHRNIKGFMVQTGDPTGTGKGGESIWGKKFEDEFRETLK 80 (153)
T ss_pred CEEEEEEccccEEEEEcCCCCcHHHHHHHHHHhcCccCCcEEEEeCCCCEEEccccCCCCCCCCccCCCccccccccCCC
Confidence 45899999999999999999999999999999999998 8898877776666667778888766788
Q ss_pred CC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEE
Q 047857 146 HE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 216 (220)
Q Consensus 146 h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i 216 (220)
|. +|+|+|++ ++++++|||||++++.|+||++|+|||+|++|||||++|++.+++++++|..+|+|.+|+|
T Consensus 81 ~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 81 HDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred cCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeEC
Confidence 75 99999999 7999999999999999999999999999999999999999999998999999999999975
No 4
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=5.4e-40 Score=259.99 Aligned_cols=132 Identities=35% Similarity=0.621 Sum_probs=122.5
Q ss_pred EEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCCCC-
Q 047857 83 VLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPKHE- 147 (220)
Q Consensus 83 ~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~- 147 (220)
+++|+.|+|+||||++.||++|+||++||+.+||+ +||+.+.+.++.+.++..+++|..+.++|.
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~g~~~~~~~~~~~e~~~~~~h~~ 80 (148)
T cd01927 1 IIHTTKGDIHIRLFPEEAPKTVENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTGDGTGGESIWGKEFEDEFSPSLKHDR 80 (148)
T ss_pred CeEeccccEEEEEeCCCCcHHHHHHHHHhhcCCcCCcEEEEEcCCcEEEecccCCCCCCCCcccCCccccccccccCcCC
Confidence 47999999999999999999999999999999999 899988777777667778888887788888
Q ss_pred CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEE
Q 047857 148 AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINV 214 (220)
Q Consensus 148 ~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~ 214 (220)
+|+|+||+ ++++++|||||++++.|+||++|+|||+|++|||||++|++.+++++++|.++|+|.++
T Consensus 81 ~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~ 148 (148)
T cd01927 81 PYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIINI 148 (148)
T ss_pred CeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEeC
Confidence 69999998 89999999999999999999999999999999999999999999989999999999874
No 5
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-40 Score=293.56 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=164.5
Q ss_pred hhhHHhhhhhccCCccchhHHH---HHHHHHHHHHHHHHHHhhhcccC----CcCCccccCCCCCcccc--hhhhhcccC
Q 047857 6 PQALLIQSKRKKGPTRISAKTI---IICNLIVVLIVLCLVVTYRHWSH----SQRSNEQIGNESSTVED--DAYAVSKKF 76 (220)
Q Consensus 6 ~~~~~~~~~~~k~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~--~~~~~~~~~ 76 (220)
..+|||+.+..++... -+++. .+-..---.++||++........ .+.+..+..++.|..++ ...+.....
T Consensus 323 ~~sl~q~~~k~~~~~~-~~~a~~np~~~~~~dpt~~c~a~kk~rfylf~ep~~~~~~~dvfne~p~~~~~~~~~~~~g~~ 401 (558)
T KOG0882|consen 323 RLSLYQGAQKSNLAAL-EVAASNNPLLEFQKDPTIVCTAFKKNRFYLFREPEFTESDRDVFNEKPLKEELMEARQEEGNK 401 (558)
T ss_pred hHHHHhhhhhccchhh-hhhhccCcccccCCCCeEEEeeeecceEEEEecCCCCcchhhhhccCcChhHhhhhhhccCce
Confidence 5689999855444433 11110 00011112334555444433332 11223355666666665 222222333
Q ss_pred CCCceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCC
Q 047857 77 DLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRT 142 (220)
Q Consensus 77 ~~~~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~ 142 (220)
..+..++++|++|+|.|.||+++||+||+||-..|+.|||| +|||.|+|.+|.+.||.+|++|.++
T Consensus 402 ~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rngyy~~~~fhriik~fmiqtgdp~g~gtggesiwg~dfedefh~ 481 (558)
T KOG0882|consen 402 LLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNGYYDNHTFHRIIKGFMIQTGDPLGDGTGGESIWGKDFEDEFHP 481 (558)
T ss_pred ecccceEEEecccceEEEecccccchhhhhhhccccCccccCcchHHhhhhheeecCCCCCCCCCCcccccccchhhcCc
Confidence 34445999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEEe
Q 047857 143 SPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLK 217 (220)
Q Consensus 143 ~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~ 217 (220)
.|+|+ +.+|+||+ |||+||||||||+.+.|||||+|||||||+.|||||++|+++.++..+||.+++.|.+++|.
T Consensus 482 ~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinisv~ 558 (558)
T KOG0882|consen 482 NLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINISVK 558 (558)
T ss_pred ccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEecC
Confidence 99999 89999999 99999999999999999999999999999999999999999999999999999999999873
No 6
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-40 Score=286.04 Aligned_cols=148 Identities=25% Similarity=0.446 Sum_probs=143.0
Q ss_pred hcccCCCCceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccC
Q 047857 72 VSKKFDLPGHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIR 137 (220)
Q Consensus 72 ~~~~~~~~~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~ 137 (220)
.+..+....+|.+.|+.|+|.|||+++.+|++|+||+.||+.|||+ ||||+|+|.++.+.||.+|.
T Consensus 270 ry~rvKkkgyvrl~Tn~G~lNlELhcd~~P~aceNFI~lc~~gYYnnt~FHRsIrnFmiQGGDPTGTG~GGeSiWgKpFk 349 (518)
T KOG0883|consen 270 RYTRVKKKGYVRLVTNHGPLNLELHCDYAPRACENFITLCKNGYYNNTIFHRSIRNFMIQGGDPTGTGRGGESIWGKPFK 349 (518)
T ss_pred hhccccccceEEEeccCCceeeEeecCcchHHHHHHHHHHhcccccchHHHHHHHHHeeeCCCCCCCCCCCccccCCccc
Confidence 5677888889999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEE
Q 047857 138 SQLRTSPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVT 215 (220)
Q Consensus 138 ~e~~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~ 215 (220)
+|..+.|.|+ ||+|+||+ |||+|||||||++.+..|||++|||||+||.|+|+|.+|+.+++|++++|..+|+|.++.
T Consensus 350 DEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~ 429 (518)
T KOG0883|consen 350 DEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAI 429 (518)
T ss_pred cccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeE
Confidence 9999999999 99999999 999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeeC
Q 047857 216 LKHA 219 (220)
Q Consensus 216 i~~d 219 (220)
|.-|
T Consensus 430 VFVd 433 (518)
T KOG0883|consen 430 VFVD 433 (518)
T ss_pred EeeC
Confidence 8644
No 7
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-39 Score=257.74 Aligned_cols=134 Identities=30% Similarity=0.528 Sum_probs=117.7
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCC-CCCCCcccCCccCCCCCCCC--
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDL-AAADEWTSRGKIRSQLRTSP-- 144 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~-g~~~~~~~~~~~~~e~~~~l-- 144 (220)
++++|+.|+|+|+||++.||+||+||++||+.+||| |||++++ +.++. +.++++|+....
T Consensus 2 v~~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~~~ 78 (158)
T COG0652 2 VILETNKGDITIELYPDKAPKTVANFLQLVKEGFYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALNGD 78 (158)
T ss_pred ceeeccCCCEEEEECCCcCcHHHHHHHHHHHcCCCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcccccccccc
Confidence 789999999999999999999999999999999999 8998877 55444 266888855443
Q ss_pred CCCCeEEEeec-C-CCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCC----CCCCCceEEEEEEEee
Q 047857 145 KHEAFMIGTVK-S-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEH----YQPKSDVGIINVTLKH 218 (220)
Q Consensus 145 ~h~~G~v~ma~-~-~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~----~~P~~~i~I~~~~i~~ 218 (220)
+|.+|+||||| + ||+++|||||++.++||||++|+|||+|++|||||++|++++++.. +.|..+++|.++.+++
T Consensus 79 ~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 158 (158)
T COG0652 79 RHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKIVE 158 (158)
T ss_pred cCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeeeeC
Confidence 45599999999 6 9999999999999999999999999999999999999999888753 5677889999988753
No 8
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=2.4e-39 Score=260.90 Aligned_cols=137 Identities=26% Similarity=0.460 Sum_probs=121.2
Q ss_pred EEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccC-------CccCCCCC
Q 047857 83 VLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSR-------GKIRSQLR 141 (220)
Q Consensus 83 ~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~-------~~~~~e~~ 141 (220)
+++|+.|+|+||||++.||+||+||++||+.+||+ +||+.+++.++...++ ..+.+|..
T Consensus 1 ll~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~~Y~g~~fhrvi~~f~iQgGd~~~~g~~~~~~~~~~~~~~~~~~~~e~~ 80 (166)
T cd01921 1 LLETTLGDLVIDLFTDECPLACLNFLKLCKLKYYNFCLFYNVQKDFIAQTGDPTGTGAGGESIYSQLYGRQARFFEPEIL 80 (166)
T ss_pred CcEeccCCEEEEEcCCCCCHHHHHHHHHHhcCCcCCCEEEEEeCCceEEECCcCCCCCCCcccccccccccCcccCcccC
Confidence 47899999999999999999999999999999999 8888776655443322 23556666
Q ss_pred CCCCCC-CeEEEeec-CCCCCCceEEEEcCC-CCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEEee
Q 047857 142 TSPKHE-AFMIGTVK-SKDSKGFELYITTAP-IPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKH 218 (220)
Q Consensus 142 ~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~-~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 218 (220)
..++|. +|+|+||+ ++++++|||||++.+ .|+||++|+|||+|++|||||++|++.+++++++|.++|+|.+|+|+.
T Consensus 81 ~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 160 (166)
T cd01921 81 PLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILD 160 (166)
T ss_pred CccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence 678885 99999999 789999999999975 799999999999999999999999999999999999999999999998
Q ss_pred C
Q 047857 219 A 219 (220)
Q Consensus 219 d 219 (220)
|
T Consensus 161 ~ 161 (166)
T cd01921 161 D 161 (166)
T ss_pred C
Confidence 6
No 9
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=5.2e-39 Score=253.82 Aligned_cols=130 Identities=29% Similarity=0.537 Sum_probs=119.1
Q ss_pred EEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCCCC-
Q 047857 83 VLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPKHE- 147 (220)
Q Consensus 83 ~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~- 147 (220)
+++|+.|+|+||||.+.||++|+||++||+++||+ +||+.+.+.++.+.++..+++|....++|.
T Consensus 1 ~i~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~~f~iq~Gd~~~~g~~~~~~~~~~~~~e~~~~~~h~~ 80 (146)
T cd01922 1 TLETTMGEITLELYWNHAPKTCKNFYELAKRGYYNGTIFHRLIKDFMIQGGDPTGTGRGGASIYGKKFEDEIHPELKHTG 80 (146)
T ss_pred CeEeccccEEEEEcCCCCcHHHHHHHHHHhcCCcCCcEEEEEcCCcEEEecccCCCCCCcccccCCCcccccccCcCCCC
Confidence 37899999999999999999999999999999999 888887776666666777888876778887
Q ss_pred CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEE
Q 047857 148 AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 213 (220)
Q Consensus 148 ~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~ 213 (220)
+|+|+|++ +|++++|||||+++++|+||++|+|||+|++|||||++|++.+++ +++|.++|+|.+
T Consensus 81 ~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 81 AGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred CeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 99999999 899999999999999999999999999999999999999999998 889999999963
No 10
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-39 Score=242.25 Aligned_cols=140 Identities=26% Similarity=0.505 Sum_probs=133.7
Q ss_pred ceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCC
Q 047857 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPK 145 (220)
Q Consensus 80 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~ 145 (220)
+.|+++|+.|+|.||||.+.+|++|+||+.||...||| +||++.+|.++.+.||.+|++|+...|+
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lk 80 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHh
Confidence 35899999999999999999999999999999999999 8889889999999999999999988999
Q ss_pred CC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCC-CCCCCceEEEEEEEeeC
Q 047857 146 HE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEH-YQPKSDVGIINVTLKHA 219 (220)
Q Consensus 146 h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~-~~P~~~i~I~~~~i~~d 219 (220)
|. ||.|+||+ +||+|+||||||++..||||-+|||||+|++|+|.|++|+..++++. .||+.++.|.+++|..+
T Consensus 81 h~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itihan 157 (161)
T KOG0884|consen 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHAN 157 (161)
T ss_pred hccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEecC
Confidence 99 99999999 89999999999999999999999999999999999999999999986 89999999999999753
No 11
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-39 Score=258.87 Aligned_cols=136 Identities=32% Similarity=0.463 Sum_probs=123.9
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhc---Cc-cc--------------cCCCCC-CCCCCCcccCCccCCCCCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQK---GY-FK--------------AGHSKD-LAAADEWTSRGKIRSQLRT 142 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~---g~-Y~--------------gGd~~~-~g~~~~~~~~~~~~~e~~~ 142 (220)
...+...|+|+|+||++.+|+||+||.+||.+ +| |. |||++. +|.++.+.++..+++|+ .
T Consensus 47 ~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtGg~SIyG~~F~DEN-f 125 (217)
T KOG0880|consen 47 EIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTGGKSIYGEKFPDEN-F 125 (217)
T ss_pred EECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCCCeEeecCCCCCcc-c
Confidence 45577889999999999999999999999983 22 33 999975 48888899999999998 6
Q ss_pred CCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEEee
Q 047857 143 SPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKH 218 (220)
Q Consensus 143 ~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~~ 218 (220)
.|+|+ +|.||||+ ||++||||||||+...+||||+|+|||+|++|||+|.+|+.+++|++++|+++++|.+|.-++
T Consensus 126 ~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 126 KLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELP 203 (217)
T ss_pred eeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCccc
Confidence 99999 89999999 999999999999999999999999999999999999999999999999999999999997543
No 12
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=1e-37 Score=256.15 Aligned_cols=136 Identities=27% Similarity=0.437 Sum_probs=118.3
Q ss_pred eEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCCC
Q 047857 81 HAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPKH 146 (220)
Q Consensus 81 ~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~h 146 (220)
.|+++|+.|+|+||||++.||+||+||++||+.|||| +||+.+...+. ..+..+.+|....++|
T Consensus 30 ~v~l~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRvi~~f~iQgG~~~~~~~~~--~~~~~~~~e~~~~l~~ 107 (190)
T PRK10903 30 HVLLTTSAGNIELELNSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQK--KPNPPIKNEADNGLRN 107 (190)
T ss_pred EEEEEeccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEeCCceEEeCCcCCCCCCC--CCCCcccCcccccCcC
Confidence 4899999999999999999999999999999999999 77765443222 2244577776567788
Q ss_pred CCeEEEeec--CCCCCCceEEEEcCCCCCCCC-----CccEEEEEecCHHHHHHHHhCCCCC----CCCCCCceEEEEEE
Q 047857 147 EAFMIGTVK--SKDSKGFELYITTAPIPDLND-----KLIVFGRVVKGEDVVQEIEEVDTDE----HYQPKSDVGIINVT 215 (220)
Q Consensus 147 ~~G~v~ma~--~~~~~~sqFfIt~~~~~~Ld~-----~~tVFG~Vv~Gmdvv~~I~~~~~~~----~~~P~~~i~I~~~~ 215 (220)
.+|+|+||+ +|++++|||||++.+.++||+ +|+|||+|++|||||++|++.++++ +++|.++|+|.+|+
T Consensus 108 ~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~ 187 (190)
T PRK10903 108 TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAK 187 (190)
T ss_pred CCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEE
Confidence 899999998 489999999999999999984 8999999999999999999999976 47999999999999
Q ss_pred Eee
Q 047857 216 LKH 218 (220)
Q Consensus 216 i~~ 218 (220)
|++
T Consensus 188 v~~ 190 (190)
T PRK10903 188 VLP 190 (190)
T ss_pred EeC
Confidence 874
No 13
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.8e-37 Score=251.07 Aligned_cols=140 Identities=24% Similarity=0.462 Sum_probs=128.5
Q ss_pred ceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCC
Q 047857 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPK 145 (220)
Q Consensus 80 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~ 145 (220)
..|+++|+.|+|+||||++.||+||+||++||+.+||+ +||+.+++.++.+.++..+++|....++
T Consensus 6 ~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi~~f~iQgGd~~~~g~g~~s~~g~~~~~E~~~~~~ 85 (171)
T cd01925 6 GKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVVPGFIIQGGDPTGTGTGGESIYGEPFKDEFHSRLR 85 (171)
T ss_pred cEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEcCCcEEEccccCCCCccCcccCCCccCcccccCcC
Confidence 35899999999999999999999999999999999998 8998887777777777788888776777
Q ss_pred CC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEe-cCHHHHHHHHhCCCCCCCCCCCceEEEEEEEeeC
Q 047857 146 HE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVV-KGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKHA 219 (220)
Q Consensus 146 h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv-~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~~d 219 (220)
|. +|+|+||+ ++++++|||||++++.|+||++|+|||+|+ +++++|++|++++++++++|.++|+|.+|+|++|
T Consensus 86 ~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~ 162 (171)
T cd01925 86 FNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLEN 162 (171)
T ss_pred CCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcC
Confidence 65 99999999 789999999999999999999999999999 4688999999999999999999999999999876
No 14
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-38 Score=274.11 Aligned_cols=136 Identities=32% Similarity=0.551 Sum_probs=125.2
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhcC-----------ccc--------------cCCCC-CCCCCCCcccCCc
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKG-----------YFK--------------AGHSK-DLAAADEWTSRGK 135 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g-----------~Y~--------------gGd~~-~~g~~~~~~~~~~ 135 (220)
-+-....|+|+||||.|.||+||+||..||.+. .|. +||++ |+|.+|.++||..
T Consensus 16 SI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGtGGeSIYG~~ 95 (372)
T KOG0546|consen 16 SIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGTGGESIYGEK 95 (372)
T ss_pred EeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCCCcccccccc
Confidence 566778999999999999999999999999752 244 99996 6788888999998
Q ss_pred cCCCCCCCCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEE
Q 047857 136 IRSQLRTSPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 213 (220)
Q Consensus 136 ~~~e~~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~ 213 (220)
|.||+ +.++|+ +++||||| ||||||||||||+.++|||||+|+|||+||+|++||+.|+.+.+|++++|+.+|+|.+
T Consensus 96 FdDEn-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~d 174 (372)
T KOG0546|consen 96 FDDEN-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISD 174 (372)
T ss_pred ccccc-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEecc
Confidence 88887 689999 89999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEee
Q 047857 214 VTLKH 218 (220)
Q Consensus 214 ~~i~~ 218 (220)
|+.+.
T Consensus 175 CGel~ 179 (372)
T KOG0546|consen 175 CGELV 179 (372)
T ss_pred ccccc
Confidence 99874
No 15
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=1.1e-36 Score=244.72 Aligned_cols=135 Identities=28% Similarity=0.456 Sum_probs=115.3
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCCCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPKHE 147 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~ 147 (220)
|+++|+.|+|+|+||++.||+||+||++||+.+||| +||+..+... ..++..+++|....++|.
T Consensus 2 v~~~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQgGd~~~~~~~--~~~~~~~~~e~~~~~~~~ 79 (164)
T PRK10791 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQ--KATKEPIKNEANNGLKNT 79 (164)
T ss_pred EEEEEccccEEEEEeCCCCcHHHHHHHHHHhcCCcCCcEEEEEecCcEEEeCCcCCCCCc--CCCCCCcCCcccccccCC
Confidence 689999999999999999999999999999999999 6665422111 123456777766678888
Q ss_pred CeEEEeec--CCCCCCceEEEEcCCCCCCC-------C-CccEEEEEecCHHHHHHHHhCCCCCC----CCCCCceEEEE
Q 047857 148 AFMIGTVK--SKDSKGFELYITTAPIPDLN-------D-KLIVFGRVVKGEDVVQEIEEVDTDEH----YQPKSDVGIIN 213 (220)
Q Consensus 148 ~G~v~ma~--~~~~~~sqFfIt~~~~~~Ld-------~-~~tVFG~Vv~Gmdvv~~I~~~~~~~~----~~P~~~i~I~~ 213 (220)
+|+|+||+ +|++++|||||++.+.++|| + +|+|||+|++|||||++|++.+++.+ ++|..+|+|.+
T Consensus 80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~ 159 (164)
T PRK10791 80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES 159 (164)
T ss_pred CcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEE
Confidence 99999998 48999999999999988876 3 79999999999999999999999763 69999999999
Q ss_pred EEEee
Q 047857 214 VTLKH 218 (220)
Q Consensus 214 ~~i~~ 218 (220)
|+|.+
T Consensus 160 ~~i~~ 164 (164)
T PRK10791 160 VTVSE 164 (164)
T ss_pred EEEeC
Confidence 99864
No 16
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=2.8e-35 Score=249.12 Aligned_cols=136 Identities=24% Similarity=0.341 Sum_probs=115.8
Q ss_pred ceEEEEec-----cceEEEEEcCCCChHHHHHHHHHHhcC-----------ccc---------------cCCCCCCCCCC
Q 047857 80 GHAVLNTS-----KGYIIVELFKDGSPETVDKFIDLCQKG-----------YFK---------------AGHSKDLAAAD 128 (220)
Q Consensus 80 ~~v~~~T~-----~G~i~ieL~~~~aP~~~~nF~~L~~~g-----------~Y~---------------gGd~~~~g~~~ 128 (220)
..|.++++ .|+|+||||.+.||+||+||+.||++. +|+ +||+.+. +
T Consensus 53 ~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~~---g 129 (249)
T PTZ00221 53 CRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDSF---N 129 (249)
T ss_pred CEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCCC---C
Confidence 34777776 567999999999999999999999742 255 4555432 2
Q ss_pred CcccCCccCCCCCCCCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCC
Q 047857 129 EWTSRGKIRSQLRTSPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPK 206 (220)
Q Consensus 129 ~~~~~~~~~~e~~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~ 206 (220)
...++..+++|. ..++|+ +|+|+|++ +||+++||||||+.+.|+||++|+|||+|++|||||++|++.+++.+++|.
T Consensus 130 ~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~ 208 (249)
T PTZ00221 130 VSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPL 208 (249)
T ss_pred ccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCC
Confidence 234466788886 467776 99999999 899999999999999999999999999999999999999999998889999
Q ss_pred CceEEEEEEEeeC
Q 047857 207 SDVGIINVTLKHA 219 (220)
Q Consensus 207 ~~i~I~~~~i~~d 219 (220)
++|+|.+|+++.+
T Consensus 209 ~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 209 LPVTVSFCGALTG 221 (249)
T ss_pred CCeEEEECeEecC
Confidence 9999999999875
No 17
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.7e-35 Score=235.89 Aligned_cols=129 Identities=29% Similarity=0.420 Sum_probs=111.1
Q ss_pred EEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCCCCCe
Q 047857 84 LNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPKHEAF 149 (220)
Q Consensus 84 ~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~~G 149 (220)
++|+.|+|+|+||++.||+||+||++||+.|||| +||+..++.... .+..+.+|....++|.+|
T Consensus 2 l~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~~~--~~~~~~~e~~~~~~~~~G 79 (155)
T cd01920 2 FQTSLGDIVVELYDDKAPITVENFLAYVRKGFYDNTIFHRVISGFVIQGGGFTPDLAQKE--TLKPIKNEAGNGLSNTRG 79 (155)
T ss_pred cEecceeEEEEEeCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCCcEEEeCCCCCCCCccc--cCCcccCcccccccCCce
Confidence 6899999999999999999999999999999999 777765443322 234566676556778899
Q ss_pred EEEeec--CCCCCCceEEEEcCCCCCCCC-----CccEEEEEecCHHHHHHHHhCCCCCC----CCCCCceEEEEE
Q 047857 150 MIGTVK--SKDSKGFELYITTAPIPDLND-----KLIVFGRVVKGEDVVQEIEEVDTDEH----YQPKSDVGIINV 214 (220)
Q Consensus 150 ~v~ma~--~~~~~~sqFfIt~~~~~~Ld~-----~~tVFG~Vv~Gmdvv~~I~~~~~~~~----~~P~~~i~I~~~ 214 (220)
+|+||+ +|++++|||||++.+.|+||+ +|+|||+|++|||||++|++++++.+ ++|..+|+|.++
T Consensus 80 ~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 80 TIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred EEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 999998 489999999999999999995 79999999999999999999999774 689999998764
No 18
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=6.4e-35 Score=238.87 Aligned_cols=131 Identities=27% Similarity=0.393 Sum_probs=114.7
Q ss_pred eccceEEEEEcCCCChHHHHHHHHHHhcCc--------cc--------------cCCCC-CCCCCCCcccCCccCCCCCC
Q 047857 86 TSKGYIIVELFKDGSPETVDKFIDLCQKGY--------FK--------------AGHSK-DLAAADEWTSRGKIRSQLRT 142 (220)
Q Consensus 86 T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~--------Y~--------------gGd~~-~~g~~~~~~~~~~~~~e~~~ 142 (220)
++.|+|+||||.+.||+||+||++||+++| |+ +||+. +.+.++...++..+++|..
T Consensus 30 ~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~~~g~~f~~e~~- 108 (186)
T PLN03149 30 IPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVSIYGSKFEDENF- 108 (186)
T ss_pred cccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCcccccCCccCCccc-
Confidence 467999999999999999999999998654 77 88874 5555555556667777753
Q ss_pred CCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEe-cCHHHHHHHHhCCCCCCCCCCCceEEEEEEEe
Q 047857 143 SPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVV-KGEDVVQEIEEVDTDEHYQPKSDVGIINVTLK 217 (220)
Q Consensus 143 ~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv-~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~ 217 (220)
.++|. +|+|+|++ ++++++|||||++.+.|+||++|+|||+|+ +|||||++|++.+++++++|.++|+|.+|+++
T Consensus 109 ~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 109 IAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred ccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 56666 99999999 899999999999999999999999999999 89999999999999999999999999999974
No 19
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=6.3e-35 Score=234.71 Aligned_cols=132 Identities=30% Similarity=0.482 Sum_probs=115.3
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhc--C------ccc--------------cCCCC-CCCCCCCcccCCccCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQK--G------YFK--------------AGHSK-DLAAADEWTSRGKIRS 138 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~--g------~Y~--------------gGd~~-~~g~~~~~~~~~~~~~ 138 (220)
.+-.++.|+|+||||.+.||++|+||++||++ + ||+ +||+. +++.++.+.++..+++
T Consensus 8 ~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~~g~~~~~ 87 (164)
T cd01926 8 TIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSIYGEKFPD 87 (164)
T ss_pred eECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcccCCccCC
Confidence 34457899999999999999999999999983 4 788 88864 4455555556666777
Q ss_pred CCCCCCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEE
Q 047857 139 QLRTSPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVT 215 (220)
Q Consensus 139 e~~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~ 215 (220)
|. ..++|. +|+|+||+ ++++++|||||++.+.|+||++|+|||+|++|||||++|++.+++ +++|.++|+|.+|+
T Consensus 88 e~-~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~I~~cG 164 (164)
T cd01926 88 EN-FKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVVIADCG 164 (164)
T ss_pred CC-ccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence 75 568885 99999999 899999999999999999999999999999999999999999998 89999999999984
No 20
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=1.3e-34 Score=236.60 Aligned_cols=135 Identities=28% Similarity=0.456 Sum_probs=116.0
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHh---------cCccc--------------cCCCC-CCCCCCCcccCCccC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQ---------KGYFK--------------AGHSK-DLAAADEWTSRGKIR 137 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~---------~g~Y~--------------gGd~~-~~g~~~~~~~~~~~~ 137 (220)
.+..++.|+|+||||.+.||++|+||++||+ .+||+ +||+. +.+.++...++..++
T Consensus 23 ~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g~~~~g~~~~ 102 (183)
T PTZ00060 23 SIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGGESIYGRKFT 102 (183)
T ss_pred EECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCCCcccccccC
Confidence 4455678999999999999999999999997 45888 88875 344555555566677
Q ss_pred CCCCCCCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEE
Q 047857 138 SQLRTSPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVT 215 (220)
Q Consensus 138 ~e~~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~ 215 (220)
+|. ..++|. +|+|+|++ ++++++|||||++.+.|+||++|+|||+|++|||||++|++.++. +++|.++|+|.+|+
T Consensus 103 ~e~-~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~~v~I~~cg 180 (183)
T PTZ00060 103 DEN-FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCG 180 (183)
T ss_pred Ccc-ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcCCeEEEEeE
Confidence 774 567887 89999998 899999999999999999999999999999999999999998874 68999999999999
Q ss_pred Eee
Q 047857 216 LKH 218 (220)
Q Consensus 216 i~~ 218 (220)
++.
T Consensus 181 ~~~ 183 (183)
T PTZ00060 181 ELQ 183 (183)
T ss_pred EcC
Confidence 863
No 21
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-35 Score=251.96 Aligned_cols=140 Identities=23% Similarity=0.388 Sum_probs=130.1
Q ss_pred ceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCC-------ccCC
Q 047857 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRG-------KIRS 138 (220)
Q Consensus 80 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~-------~~~~ 138 (220)
|.|+|+|++|+|+|+||-+.+|.+|.||++||+..||| .|||+|+|.||.+.|+. -|..
T Consensus 1 MsVlieTtlGDlvIDLf~~erP~~clNFLKLCk~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 1 MSVLIETTLGDLVIDLFVKERPRTCLNFLKLCKIKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQARFFEA 80 (479)
T ss_pred CcEEEEeecccEEeeeecccCcHHHHHHHHHHhHhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccchhhhh
Confidence 35999999999999999999999999999999999999 89999999998776653 2567
Q ss_pred CCCCCCCCC-CeEEEeec-CCCCCCceEEEEcCCC-CCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEE
Q 047857 139 QLRTSPKHE-AFMIGTVK-SKDSKGFELYITTAPI-PDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVT 215 (220)
Q Consensus 139 e~~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~-~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~ 215 (220)
|..+.++|. .|+|+|++ |.|.+|||||||++++ ..|||+|+|||+|+||||+|.+|+.+-+|.+++|.++|+|.+..
T Consensus 81 E~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTi 160 (479)
T KOG0415|consen 81 EFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTI 160 (479)
T ss_pred hhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeE
Confidence 888999999 89999999 7899999999999875 69999999999999999999999999999999999999999999
Q ss_pred EeeC
Q 047857 216 LKHA 219 (220)
Q Consensus 216 i~~d 219 (220)
|++|
T Consensus 161 iLdD 164 (479)
T KOG0415|consen 161 ILDD 164 (479)
T ss_pred EecC
Confidence 9987
No 22
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=1.4e-33 Score=222.25 Aligned_cols=130 Identities=34% Similarity=0.571 Sum_probs=114.1
Q ss_pred EEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCC-CCC
Q 047857 83 VLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSP-KHE 147 (220)
Q Consensus 83 ~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l-~h~ 147 (220)
+++|+.|+|+|+||++.||++|+||++||+.+||+ +||+...+..+ ...+..+++|..... .|.
T Consensus 1 ~~~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~-~~~~~~~~~E~~~~~~~~~ 79 (146)
T cd00317 1 TLDTTKGRIVIELYGDEAPKTVENFLSLARGGFYDGTTFHRVIPGFMIQGGDPTGTGGGG-SGPGYKFPDENFPLKYHHR 79 (146)
T ss_pred CeEeccCcEEEEEcCCCChHHHHHHHHHHhcCCcCCCEEEEEeCCCeEEECCCCCCCCCC-CcCCCccCCccccCcCcCC
Confidence 37899999999999999999999999999999999 77776554432 233556788877666 466
Q ss_pred CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEE
Q 047857 148 AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 213 (220)
Q Consensus 148 ~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~ 213 (220)
+|+|+|++ ++++++|||||++.+.++||++|+|||+|++|||+|++|++.+++++++|.++|+|.+
T Consensus 80 ~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 80 RGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred CcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 99999998 6889999999999999999999999999999999999999999999999999999963
No 23
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=1.3e-33 Score=224.45 Aligned_cols=133 Identities=34% Similarity=0.606 Sum_probs=115.8
Q ss_pred EEEEec-cceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCC--CcccCCccCCCCC-CC
Q 047857 82 AVLNTS-KGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAAD--EWTSRGKIRSQLR-TS 143 (220)
Q Consensus 82 v~~~T~-~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~--~~~~~~~~~~e~~-~~ 143 (220)
+.++|+ .|+|+||||++.||++|+||++||+.++|+ +|++.+.+..+ ....+..+++|.. ..
T Consensus 2 ~~i~t~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~E~~~~~ 81 (155)
T PF00160_consen 2 VDIETSGLGRIVIELFGDEAPKTVENFLRLCTSGFYDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPDEFNPSL 81 (155)
T ss_dssp EEEEETTEEEEEEEEETTTSHHHHHHHHHHHHTTSSTTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSSSGBTTS
T ss_pred EEEEeCCccCEEEEEeCCCCcHHHHhhehhhcccccCCceeecccccceeeeeeccCCCCcccccccCcccccccccccc
Confidence 789997 999999999999999999999999999998 77776554411 1222335777764 46
Q ss_pred CCCCCeEEEeec-C--CCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEE
Q 047857 144 PKHEAFMIGTVK-S--KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 216 (220)
Q Consensus 144 l~h~~G~v~ma~-~--~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i 216 (220)
+.|.+|+|+|++ + +++++|||||++.+.++||++|+|||+|++||+||++|++.++++ +|.++|+|.+|+|
T Consensus 82 ~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~cgv 155 (155)
T PF00160_consen 82 LKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISSCGV 155 (155)
T ss_dssp SSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEEEEE
T ss_pred ccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEEeEC
Confidence 889999999997 3 789999999999999999999999999999999999999999876 9999999999997
No 24
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-33 Score=213.82 Aligned_cols=133 Identities=29% Similarity=0.442 Sum_probs=121.4
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhcCc--------cc--------------cCCC-CCCCCCCCcccCCccCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGY--------FK--------------AGHS-KDLAAADEWTSRGKIRS 138 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~--------Y~--------------gGd~-~~~g~~~~~~~~~~~~~ 138 (220)
++..+..|+|.||||.+.+|+|++||.++|.+.| |+ +||+ .++|.+..+.++..+++
T Consensus 18 ~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG~~sIy~~~F~D 97 (177)
T KOG0879|consen 18 AIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTGVASIYGSTFPD 97 (177)
T ss_pred eeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCceEEEEcCCCCCC
Confidence 5667889999999999999999999999998765 32 8887 45666667788888999
Q ss_pred CCCCCCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEE
Q 047857 139 QLRTSPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVT 215 (220)
Q Consensus 139 e~~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~ 215 (220)
|+ ..++|+ +|+++||+ ++++||.|||||..+..|||++|+|||+|++|+.++++|+.+++..+++|.-+|.|..|+
T Consensus 98 EN-FtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCG 175 (177)
T KOG0879|consen 98 EN-FTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCG 175 (177)
T ss_pred cc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecc
Confidence 88 689999 99999999 899999999999999999999999999999999999999999999999999999999986
No 25
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-33 Score=240.00 Aligned_cols=140 Identities=25% Similarity=0.464 Sum_probs=133.4
Q ss_pred ceEEEEeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCCCCcccCCccCCCCCCCCC
Q 047857 80 GHAVLNTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAADEWTSRGKIRSQLRTSPK 145 (220)
Q Consensus 80 ~~v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~~~~~~~~~~~~e~~~~l~ 145 (220)
..|++.|+.|+|.||||+..||++|.||++||..|||+ ||||+++|.||.+++|.+|.+|.++.|+
T Consensus 13 gkvil~TT~G~I~iELW~kE~P~acrnFiqKOGegyy~nt~fhrlvp~f~~Qggdp~~~gtGgesiyg~~fadE~h~Rlr 92 (439)
T KOG0885|consen 13 GKVILKTTKGDIDIELWAKECPKACRNFIQLCLEGYYDNTEFHRLVPGFLVQGGDPTGTGTGGESIYGRPFADEFHPRLR 92 (439)
T ss_pred ceEEEEeccCceeeeehhhhhhHHHHHHHHHHHhccccCceeeeeccchhcccCCCCCCCCCccccccccchhhcCccee
Confidence 34999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEe-cCHHHHHHHHhCCCCCCCCCCCceEEEEEEEeeC
Q 047857 146 HE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVV-KGEDVVQEIEEVDTDEHYQPKSDVGIINVTLKHA 219 (220)
Q Consensus 146 h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv-~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~~d 219 (220)
+. +|+|+||+ +.+.||||||+|++++|||+++||+||+|+ +-+..+.+|..+.++.+.||..+-+|.+|+|+.+
T Consensus 93 f~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~n 169 (439)
T KOG0885|consen 93 FNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLIN 169 (439)
T ss_pred eeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecC
Confidence 87 99999999 779999999999999999999999999999 5788999999999999999999999999999753
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.98 E-value=7.1e-32 Score=219.09 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=100.1
Q ss_pred EeccceEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCCCCC---------------------CC
Q 047857 85 NTSKGYIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDLAAA---------------------DE 129 (220)
Q Consensus 85 ~T~~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~g~~---------------------~~ 129 (220)
.|+.|+|+|+||++.||+||+||++||+.+||+ +||+.+.+.+ +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~~~~ 82 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERGFYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEGQKQ 82 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhCCcCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccCCCC
Confidence 589999999999999999999999999999999 8888755322 11
Q ss_pred cccCCcc-----CCCCCCCCCCCCeEEEeec-C--CCCCCceEEEEcC-------CCCCCCCCccEEEEEecCHHHHHHH
Q 047857 130 WTSRGKI-----RSQLRTSPKHEAFMIGTVK-S--KDSKGFELYITTA-------PIPDLNDKLIVFGRVVKGEDVVQEI 194 (220)
Q Consensus 130 ~~~~~~~-----~~e~~~~l~h~~G~v~ma~-~--~~~~~sqFfIt~~-------~~~~Ld~~~tVFG~Vv~Gmdvv~~I 194 (220)
..++..+ .++...++.|.+|+|+||+ + ||+++|||||++. +.|+||++|+|||+|++|||||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I 162 (176)
T cd01924 83 PVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILREL 162 (176)
T ss_pred CccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhh
Confidence 1222222 2333345667799999998 4 6999999999998 7899999999999999999999999
Q ss_pred HhCCCCCCCCCCCceEEEEEEEeeC
Q 047857 195 EEVDTDEHYQPKSDVGIINVTLKHA 219 (220)
Q Consensus 195 ~~~~~~~~~~P~~~i~I~~~~i~~d 219 (220)
+... .|.+++|++.
T Consensus 163 ~~gd-----------~i~~~~~~~~ 176 (176)
T cd01924 163 KVGD-----------KIESARVVEG 176 (176)
T ss_pred cCCC-----------EEEEEEEecC
Confidence 8652 3888888763
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.2e-30 Score=209.62 Aligned_cols=134 Identities=24% Similarity=0.384 Sum_probs=120.4
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhc--Cc-cc--------------cCCCCC-CCCCCCcccCCccCCCCCCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQK--GY-FK--------------AGHSKD-LAAADEWTSRGKIRSQLRTS 143 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~--g~-Y~--------------gGd~~~-~g~~~~~~~~~~~~~e~~~~ 143 (220)
-+.+-..|+|+++|..+..|+|++||..||.+ || |. |||++. .|.++.++++.+|.+|+ ..
T Consensus 144 kig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiygkkfdden-f~ 222 (298)
T KOG0111|consen 144 KIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYGKKFDDEN-FT 222 (298)
T ss_pred eecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCcccccccccccc-ee
Confidence 34567889999999999999999999999974 55 55 999964 56777888999998887 68
Q ss_pred CCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEEe
Q 047857 144 PKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLK 217 (220)
Q Consensus 144 l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~ 217 (220)
|+|. +|+++||+ ++|+|||||||++....|||++|+|||+|++||+||+++++..+. +++|.+.|+|.+|+-+
T Consensus 223 lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 223 LKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVKIVECGEI 297 (298)
T ss_pred eecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEEEEecccc
Confidence 9998 99999999 899999999999999999999999999999999999999998864 7899999999999754
No 28
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9e-25 Score=174.72 Aligned_cols=134 Identities=25% Similarity=0.405 Sum_probs=115.6
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHhc--Cc-cc-----------------cCCCCC-CCCCCCcccCCccCCCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQK--GY-FK-----------------AGHSKD-LAAADEWTSRGKIRSQL 140 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~~--g~-Y~-----------------gGd~~~-~g~~~~~~~~~~~~~e~ 140 (220)
.+-.+..|+++++||.|..|+|++||..||.. +| |. +||++. .+.++.+.++.++++|+
T Consensus 11 ~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSiy~ekF~Den 90 (167)
T KOG0865|consen 11 AIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSIYGEKFDDEN 90 (167)
T ss_pred eecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEecccccCCcC
Confidence 34468889999999999999999999999973 21 22 688864 45667778888887776
Q ss_pred CCCCCCC-CeEEEeec-CCCCCCceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEEEEEEEe
Q 047857 141 RTSPKHE-AFMIGTVK-SKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTLK 217 (220)
Q Consensus 141 ~~~l~h~-~G~v~ma~-~~~~~~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I~~~~i~ 217 (220)
..++|. +|+++||+ +||+++|||||++....|||++|+|||+|.+||++|++|+.... .++++.++|.|.+|+.+
T Consensus 91 -FilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs-~~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 91 -FILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGS-RNGKTSKKITIADCGQL 167 (167)
T ss_pred -cEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCC-cCCcccccEEEecCCcC
Confidence 789998 89999999 99999999999999999999999999999999999999999664 47899999999999753
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.1e-10 Score=103.08 Aligned_cols=217 Identities=38% Similarity=0.490 Sum_probs=159.0
Q ss_pred CCCCchhhHHhhhhhccCCccchhHHHHHHHHHHHHHHHHHHHhhhcccCCcCCccccCC-CCC-cccc-hhhhhcccCC
Q 047857 1 MARMKPQALLIQSKRKKGPTRISAKTIIICNLIVVLIVLCLVVTYRHWSHSQRSNEQIGN-ESS-TVED-DAYAVSKKFD 77 (220)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~p-~~~~-~~~~~~~~~~ 77 (220)
||+++|+|+++|.+.++++.+.+...+++....-+++++.++.+...|.. .+...... ... +.++ +-..--.-..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~--~Sv~d~Dhs~KvfDvEn~DminmiKL~~ 96 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLF--RSVEDPDHSVKVFDVENFDMINMIKLVD 96 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeE--eeccCcccceeEEEeeccchhhhccccc
Confidence 78999999999999999999988888888887777777777777777877 33222111 111 1122 1111222345
Q ss_pred CCceEEEEeccc----eEEEEEcCCCChHHHHHHHHHHhcCccc--------------cCCCCCC----CCCCCcccCC-
Q 047857 78 LPGHAVLNTSKG----YIIVELFKDGSPETVDKFIDLCQKGYFK--------------AGHSKDL----AAADEWTSRG- 134 (220)
Q Consensus 78 ~~~~v~~~T~~G----~i~ieL~~~~aP~~~~nF~~L~~~g~Y~--------------gGd~~~~----g~~~~~~~~~- 134 (220)
.|..+.+.|+.| .|.|+++.+-.|.-++-|..+|..+|++ .||..-. |.--.|....
T Consensus 97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 566789999999 8999999999999999999999988776 3332111 1111222211
Q ss_pred -ccCC-CCCCCCCCCCeEEEeecCCCCC-CceEEEEcCCCCCCCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCCceEE
Q 047857 135 -KIRS-QLRTSPKHEAFMIGTVKSKDSK-GFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGI 211 (220)
Q Consensus 135 -~~~~-e~~~~l~h~~G~v~ma~~~~~~-~sqFfIt~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~~i~I 211 (220)
.+++ +.+..++|+.-+..+....+.. +-+|++.-...+.++.+..|||++..|-++++.|.+..++....|..++.|
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 1332 2456789998888887744333 458999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeC
Q 047857 212 INVTLKHA 219 (220)
Q Consensus 212 ~~~~i~~d 219 (220)
.+++...+
T Consensus 257 ~~VelgRR 264 (558)
T KOG0882|consen 257 MHVELGRR 264 (558)
T ss_pred ceeehhhh
Confidence 99887654
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=97.09 E-value=0.0017 Score=59.99 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=65.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccccCCCCCCCCCCCcccCCccCCCCCCCCCCCCeEEEeecCCCCCCceEEEEcCC
Q 047857 91 IIVELFKDGSPETVDKFIDLCQKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKGFELYITTAP 170 (220)
Q Consensus 91 i~ieL~~~~aP~~~~nF~~L~~~g~Y~gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~~G~v~ma~~~~~~~sqFfIt~~~ 170 (220)
+.+||.++. |.+++.|+.+.+.|.++-...+.+--....-.+...+.|+. ..-.+|+|.+.+. +.....-||...+
T Consensus 203 ~evE~~~~~-p~s~EH~la~~~~G~~~Vd~~tsTfi~d~~L~g~~~p~En~--~~R~rGtVTVRn~-G~G~G~VYIYred 278 (503)
T TIGR03268 203 VEVELDPNA-PVSVEHFLALMEDGTFRVDYRTSTFISDDSLRGLDKPEENI--EKRRRGAVTVRNS-GVGEGRVYIYRED 278 (503)
T ss_pred EEEEEcCCC-ChhHHHHHHHHhCCeEEEeeeecceEecccccCccCCcccc--CcccceeEEEEee-ccCceeEEEEcCC
Confidence 577776655 99999999999999877222222211112222334444442 2334899998662 2223468998877
Q ss_pred CCCCCCCccEEEEEecCHHHHHHHHhC
Q 047857 171 IPDLNDKLIVFGRVVKGEDVVQEIEEV 197 (220)
Q Consensus 171 ~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~ 197 (220)
-+. .-.|+|+|+|+.|||+++--+..
T Consensus 279 r~s-s~sHtvVG~V~~GiELid~a~~G 304 (503)
T TIGR03268 279 RPS-SLSHNVVGHVTRGIELIDIAQEG 304 (503)
T ss_pred CCC-CcccceeEEEecceeeeecccCC
Confidence 552 23699999999999999854443
No 31
>PRK00969 hypothetical protein; Provisional
Probab=97.00 E-value=0.002 Score=59.63 Aligned_cols=101 Identities=22% Similarity=0.262 Sum_probs=64.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHhcCccccCCCCCCCCCCCcccCCccCCCCCCCCCCCCeEEEeecCCCCCCceEEEEcCC
Q 047857 91 IIVELFKDGSPETVDKFIDLCQKGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKGFELYITTAP 170 (220)
Q Consensus 91 i~ieL~~~~aP~~~~nF~~L~~~g~Y~gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~~G~v~ma~~~~~~~sqFfIt~~~ 170 (220)
+.++|.++. |.+++.|+.+.+.|.+.-..-+.+--....-.+...+.|+. -.-.+|+|.+.+. +.....-||...+
T Consensus 206 ~eve~~~~~-p~s~EH~la~~~~G~f~Vd~~tstfI~d~~L~g~~~p~En~--~~R~~GtVTVRt~-G~g~G~vYIyred 281 (508)
T PRK00969 206 VEVELDPGA-PKSVEHFLALLEDGTFEVDFETSTFIADDRLQGLKIPEENF--EPRRRGTVTVRTA-GVGVGKVYIYRED 281 (508)
T ss_pred EEEEEcCCC-CchHHHHHHHHhCCeEEEeeeecceEeeccccCccCCcccc--CccccceEEEEee-ccCceeEEEECCC
Confidence 677777665 99999999999999876222211111111112333444432 2334899997662 2223568999887
Q ss_pred CCCCCCCccEEEEEecCHHHHHHHHh
Q 047857 171 IPDLNDKLIVFGRVVKGEDVVQEIEE 196 (220)
Q Consensus 171 ~~~Ld~~~tVFG~Vv~Gmdvv~~I~~ 196 (220)
-+. .-.|+|+|+|+.|||+++--.+
T Consensus 282 r~s-s~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 282 RPS-SLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred CCC-CccceeEEEEecceeeeecccC
Confidence 552 2369999999999999884444
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.35 E-value=0.018 Score=53.42 Aligned_cols=107 Identities=23% Similarity=0.263 Sum_probs=59.4
Q ss_pred ccceEEEEEcCCCChHHHHHHHHHHhcCc---------cccCC---CCCCCCCCCcccCCccCCCCCCCCCCCCeEEEee
Q 047857 87 SKGYIIVELFKDGSPETVDKFIDLCQKGY---------FKAGH---SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV 154 (220)
Q Consensus 87 ~~G~i~ieL~~~~aP~~~~nF~~L~~~g~---------Y~gGd---~~~~g~~~~~~~~~~~~~e~~~~l~h~~G~v~ma 154 (220)
...-|.|+||.+.||.+++.|.++.--.. |.-.| +.+ .......+-.|+.+.-+-..|.+++.
T Consensus 373 ~~~vi~IeLydd~AP~s~~yFRk~tGL~~~~VG~L~v~F~~~d~~mFk~-----~~~~~k~LiPEN~P~~~V~ag~IgvT 447 (503)
T TIGR03268 373 KDKVIEIELYDDNAPRSVWYFRKFTGLKTKPVGRLPVHFAFKEMIMFKG-----NKELAKGLIPENTPEDKVEAGVIGVT 447 (503)
T ss_pred hHhEEEEEEcccCCchHHHHHHHhcCCcccccceeEEEEEeCCeeEecc-----CchhccccCCCCCCCCccccceEeee
Confidence 34468999999999999999999864322 22111 211 11222334445444444557777765
Q ss_pred cC----CCCCCceEEE--EcCCC-CCCCCCccEEEEEecCHHHHHHHHhCCC
Q 047857 155 KS----KDSKGFELYI--TTAPI-PDLNDKLIVFGRVVKGEDVVQEIEEVDT 199 (220)
Q Consensus 155 ~~----~~~~~sqFfI--t~~~~-~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~ 199 (220)
|. .+..|-+|-= -++|. ..+++ -.+.|+|+++++.|+++...++
T Consensus 448 N~a~k~~G~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~KeGd~ 498 (503)
T TIGR03268 448 NQACKHVGMIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKEGDT 498 (503)
T ss_pred chhhhcCceEEEEccCCcccCCCCCCccC-cceEEEecCChhHhcccccCce
Confidence 51 1111111000 01221 13444 3466999999999998877553
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.013 Score=52.81 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=63.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHhcCccc----cCCCCCCCCCCCcccCCccCCCCCCCCCCCCeEEEeecCCCCCCceEE
Q 047857 90 YIIVELFKDGSPETVDKFIDLCQKGYFK----AGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKGFELY 165 (220)
Q Consensus 90 ~i~ieL~~~~aP~~~~nF~~L~~~g~Y~----gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~~G~v~ma~~~~~~~sqFf 165 (220)
.+.++|.++. |++++.|+.|.+.|-+. ...+.+... -...+.+.|+. -.-.+|.|...+ .+.....-|
T Consensus 204 y~eve~s~ns-P~saEH~lalmedG~lri~~~tntfis~~~----lq~~~~~~en~--d~RerG~iTvRn-~GvgeGrvY 275 (512)
T COG4070 204 YFEVELSRNS-PKSAEHFLALMEDGTLRIDVTTNTFISDDT----LQEEKVPEENF--DLRERGAITVRN-VGVGEGRVY 275 (512)
T ss_pred EEEEEeCCCC-chhHHHHHHHhhcceEEEEEeccceeeccc----cccccCChhhh--hhhhcceEEEEe-eecccceEE
Confidence 4678888776 99999999999988644 333322111 11223333331 223489998766 122245688
Q ss_pred EEcCCCCCCCCCccEEEEEecCHHHHHHHHhC
Q 047857 166 ITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEV 197 (220)
Q Consensus 166 It~~~~~~Ld~~~tVFG~Vv~Gmdvv~~I~~~ 197 (220)
|.-.+-+.- -.|+|.|+|++||++++--..+
T Consensus 276 IyRedR~ss-~sHnvVGrV~eGiELid~a~eG 306 (512)
T COG4070 276 IYREDRPSS-LSHNVVGRVIEGIELIDLAEEG 306 (512)
T ss_pred EEecCCCCc-cccceeeeeecceEEEEecccC
Confidence 988764422 3699999999999998855544
No 34
>PRK00969 hypothetical protein; Provisional
Probab=95.65 E-value=0.05 Score=50.64 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=58.7
Q ss_pred cceEEEEEcCCCChHHHHHHHHHHhcCccccCCCC----CCC---CCCCcccCCccCCCCCCCCCCCCeEEEeecCCCCC
Q 047857 88 KGYIIVELFKDGSPETVDKFIDLCQKGYFKAGHSK----DLA---AADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSK 160 (220)
Q Consensus 88 ~G~i~ieL~~~~aP~~~~nF~~L~~~g~Y~gGd~~----~~g---~~~~~~~~~~~~~e~~~~l~h~~G~v~ma~~~~~~ 160 (220)
.--|.|+||.+.||+|++.|.++.--.+..=|... ..+ ..+.......+-.|+.+.-+-..|.+++.|.....
T Consensus 377 ~~vi~IeLydd~AP~s~~yFR~~tGL~~~~VG~L~v~F~~~d~~lFk~~~~~~k~liPEN~P~~~V~ag~IgvTN~a~k~ 456 (508)
T PRK00969 377 DKLIEIELYDDKAPRTVWYFRKVTGLKTKPVGKLPVYFKYEDTYLFKGNIEYAKGLLPENTPEDKVKAGEIGVTNMAAKY 456 (508)
T ss_pred HHEEEEEEcCcCCchHHHHHHHhcCCcccccceeEEEEEeCCeEEEccChhhccccCCCCCCCCccccceEeeechhhhc
Confidence 34689999999999999999998753322211000 000 00111222334455545445557777765510000
Q ss_pred CceEEEEcCC------C-CCCCCCccEEEEEecCHHHHHHHHhCCC
Q 047857 161 GFELYITTAP------I-PDLNDKLIVFGRVVKGEDVVQEIEEVDT 199 (220)
Q Consensus 161 ~sqFfIt~~~------~-~~Ld~~~tVFG~Vv~Gmdvv~~I~~~~~ 199 (220)
-.-.=|=+.+ . ..+++ -.+.|+|+ +++-|+++...++
T Consensus 457 ~G~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKeGd~ 500 (508)
T PRK00969 457 KGMIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKEGDT 500 (508)
T ss_pred CceEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhcccccCCe
Confidence 0001111222 1 12443 45779999 9999998887553
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.067 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHh
Q 047857 90 YIIVELFKDGSPETVDKFIDLCQ 112 (220)
Q Consensus 90 ~i~ieL~~~~aP~~~~nF~~L~~ 112 (220)
-|.||||.+.||.+++.|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 58999999999999999999864
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=67.47 E-value=7.4 Score=30.72 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=19.7
Q ss_pred cceEEEEEcCCCChHHHHHHHHHH
Q 047857 88 KGYIIVELFKDGSPETVDKFIDLC 111 (220)
Q Consensus 88 ~G~i~ieL~~~~aP~~~~nF~~L~ 111 (220)
.-.++.+|..|.||+||+-|.+.-
T Consensus 7 g~~~~A~l~~d~AP~Tcaa~~~~L 30 (147)
T PF12903_consen 7 GVSFTARLLDDKAPKTCAAFWEAL 30 (147)
T ss_dssp TEEEEEEE-TTTSHHHHHHHHHH-
T ss_pred CeEEEEEEcccCChHHHHHHHHhC
Confidence 347899999999999999999876
No 37
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=53.09 E-value=1.1e+02 Score=25.17 Aligned_cols=31 Identities=26% Similarity=0.316 Sum_probs=24.5
Q ss_pred EEEEeccceEEEEEcC-----CCChHHHHHHHHHHh
Q 047857 82 AVLNTSKGYIIVELFK-----DGSPETVDKFIDLCQ 112 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~-----~~aP~~~~nF~~L~~ 112 (220)
+...+-+|+.++-.|. +.||.+.+...++.+
T Consensus 60 ~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~ 95 (207)
T COG1999 60 FTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLK 95 (207)
T ss_pred eeccccCCCEEEEEeecCCCCccChHHHHHHHHHHH
Confidence 5666779998888876 789999887777765
No 38
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=51.19 E-value=13 Score=31.32 Aligned_cols=12 Identities=8% Similarity=0.401 Sum_probs=4.9
Q ss_pred HhhhhhccCCcc
Q 047857 10 LIQSKRKKGPTR 21 (220)
Q Consensus 10 ~~~~~~~k~~~~ 21 (220)
+|++.+|+|.++
T Consensus 3 f~~r~KrRK~N~ 14 (217)
T PF07423_consen 3 FQQRQKRRKTNK 14 (217)
T ss_pred hhHHHHhhhhhh
Confidence 444433333333
No 39
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=47.74 E-value=32 Score=22.83 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=10.0
Q ss_pred CccchhHHHHHHHHHHHHHH
Q 047857 19 PTRISAKTIIICNLIVVLIV 38 (220)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~ 38 (220)
+...+|.++++++..+.++.
T Consensus 4 k~~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 4 KKNSRMTRIVLLISFIILFG 23 (59)
T ss_pred cccchHHHHHHHHHHHHHHH
Confidence 33445556655554444444
No 40
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=38.08 E-value=28 Score=26.22 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=50.9
Q ss_pred EEEEeccceEEEEEcCCCChHHHHHHHHHHh----cCccccCCCCCCCCCCCcccCCccCCCCCCCCCCCCeEEEeecCC
Q 047857 82 AVLNTSKGYIIVELFKDGSPETVDKFIDLCQ----KGYFKAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSK 157 (220)
Q Consensus 82 v~~~T~~G~i~ieL~~~~aP~~~~nF~~L~~----~g~Y~gGd~~~~g~~~~~~~~~~~~~e~~~~l~h~~G~v~ma~~~ 157 (220)
+.+.-....+.++|+.. .|++.|++..= -.-| |.... .......+.+....-.-..|-|+....
T Consensus 3 I~i~i~~~~~~a~L~d~---~ta~~~~~~LPlt~~~~~~-g~E~y-------~~~p~~l~~~~~~~~~~~~GDi~Yw~p- 70 (120)
T PF04126_consen 3 IKITIGGQEIEAELNDS---PTARAFAAQLPLTVTMNDW-GNEKY-------FSLPLKLPTEENPRSSVEAGDIAYWPP- 70 (120)
T ss_dssp EEEEETTEEEEEEEETT---HHHHHHHHC-SEEEEEEEC-TTEEE-------EE-S-----SSSEESSB-TTEEEEECC-
T ss_pred EEEEECCEEEEEEECCC---HHHHHHHHhCCeEEEHHHC-CceEE-------EeCCCCCCcccCccccccCceEEEeCC-
Confidence 45566677899999998 68888887651 1111 10000 001111111111112234677765431
Q ss_pred CCCCceEEEEcCCCC-------CCCCCccEEEEEecCHHHHHHHHhC
Q 047857 158 DSKGFELYITTAPIP-------DLNDKLIVFGRVVKGEDVVQEIEEV 197 (220)
Q Consensus 158 ~~~~sqFfIt~~~~~-------~Ld~~~tVFG~Vv~Gmdvv~~I~~~ 197 (220)
+.-|-|.+++.| .+-....++|||.+|.+.++++...
T Consensus 71 ---g~~l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~~ 114 (120)
T PF04126_consen 71 ---GGALAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKGG 114 (120)
T ss_dssp ---CTEEEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--TT
T ss_pred ---CCEEEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCCC
Confidence 234777777764 3445689999999999988877553
No 41
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=37.22 E-value=22 Score=25.45 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=8.5
Q ss_pred hhccCCccchhHHHHHHH
Q 047857 14 KRKKGPTRISAKTIIICN 31 (220)
Q Consensus 14 ~~~k~~~~~~~~~~~~~~ 31 (220)
|+.|++.+++...+.+++
T Consensus 6 kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 6 KKAKRKSRLRTVVISIIS 23 (96)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344555555544444444
No 42
>PF08415 NRPS: Nonribosomal peptide synthase; InterPro: IPR013624 This domain is found in bacterial non-ribosomal peptide synthetases (NRPS). NRPS are megaenzymes organised as iterative modules, one for each amino acid to be built into the peptide product []. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions []. The NRPS domain tends to be found together with the condensation domain (IPR001242 from INTERPRO) and the phosphopantetheine binding domain (IPR006163 from INTERPRO).
Probab=34.94 E-value=38 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.6
Q ss_pred ecCHHHHHHHHhCCCCCCCCCCCceEEEE
Q 047857 185 VKGEDVVQEIEEVDTDEHYQPKSDVGIIN 213 (220)
Q Consensus 185 v~Gmdvv~~I~~~~~~~~~~P~~~i~I~~ 213 (220)
++|.+|+++|.+. .....+.-||+.++
T Consensus 4 ~sGv~vlRel~r~--~~~~~~~~PVVFTS 30 (58)
T PF08415_consen 4 FSGVEVLRELARR--GGGRAAVMPVVFTS 30 (58)
T ss_pred ccHHHHHHHHHHh--cCCCCCcCCEEEeC
Confidence 4799999999997 34556777777765
No 43
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=30.11 E-value=55 Score=17.86 Aligned_cols=11 Identities=27% Similarity=0.307 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 047857 25 KTIIICNLIVV 35 (220)
Q Consensus 25 ~~~~~~~~~~~ 35 (220)
+++++.+++++
T Consensus 8 Kkil~~l~a~~ 18 (25)
T PF08139_consen 8 KKILFPLLALF 18 (25)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 44
>PRK11372 lysozyme inhibitor; Provisional
Probab=25.34 E-value=1.3e+02 Score=22.28 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=5.4
Q ss_pred chhHHHHHH
Q 047857 22 ISAKTIIIC 30 (220)
Q Consensus 22 ~~~~~~~~~ 30 (220)
|+|+.++.+
T Consensus 1 ~~mk~ll~~ 9 (109)
T PRK11372 1 MSMKKLLII 9 (109)
T ss_pred CchHHHHHH
Confidence 577775433
No 45
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=25.08 E-value=1e+02 Score=19.29 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=13.0
Q ss_pred HhhhhhccCCccchhHHHHHHHHHHHH
Q 047857 10 LIQSKRKKGPTRISAKTIIICNLIVVL 36 (220)
Q Consensus 10 ~~~~~~~k~~~~~~~~~~~~~~~~~~l 36 (220)
.|+--++=+++|+.+..++++++++++
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ 31 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLL 31 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 444445555666555544444333333
No 46
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=23.26 E-value=2.1e+02 Score=19.14 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=25.7
Q ss_pred CCCCccEEEEEecCHHHHHHHHhCCCCCCCCCCC--ceEEEEEEEee
Q 047857 174 LNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKS--DVGIINVTLKH 218 (220)
Q Consensus 174 Ld~~~tVFG~Vv~Gmdvv~~I~~~~~~~~~~P~~--~i~I~~~~i~~ 218 (220)
+|..-.++|+|++| -+.+|.-..+++++.-+. -=+|=++..++
T Consensus 16 ~d~~G~~vG~vveG--d~k~L~G~~vd~~G~I~d~~G~viGkae~~~ 60 (64)
T PF12396_consen 16 VDDDGNVVGRVVEG--DPKKLVGKKVDEDGDILDKDGNVIGKAEPIE 60 (64)
T ss_pred ECCCCCEEEEEecC--CHHHhcCCcCCCCCCEECCCCCEEEEEEeCC
Confidence 45556899999999 555666556666544222 12445555443
No 47
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=22.27 E-value=1.6e+02 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=22.2
Q ss_pred cCCCCceEEEEecc-------ceEEEEEcCCCChHHHHHHHHHHhcC
Q 047857 75 KFDLPGHAVLNTSK-------GYIIVELFKDGSPETVDKFIDLCQKG 114 (220)
Q Consensus 75 ~~~~~~~v~~~T~~-------G~i~ieL~~~~aP~~~~nF~~L~~~g 114 (220)
+..+..+|+++-+. |-.-|....|- -..+.++.++..
T Consensus 46 ~k~PKRVVVLE~SFaDaLaal~v~PVGIADDn---k~krI~k~Vr~k 89 (310)
T COG4594 46 PKTPKRVVVLELSFADALAALGVTPVGIADDN---KKKRILKDVRDK 89 (310)
T ss_pred CCCCceEEEEEecHHHHHHHcCCeeeeeccCc---hhhhhhHHHHhh
Confidence 44555677887754 33445555543 356788888753
No 48
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=20.15 E-value=4e+02 Score=20.26 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=16.1
Q ss_pred EEEEeccce-EEEEEcCCCChHHHHH
Q 047857 82 AVLNTSKGY-IIVELFKDGSPETVDK 106 (220)
Q Consensus 82 v~~~T~~G~-i~ieL~~~~aP~~~~n 106 (220)
+.+....|+ +.|..|..+||....+
T Consensus 54 ~~l~~~~~k~~~l~f~a~~C~~C~~~ 79 (173)
T PRK03147 54 IELKDLKGKGVFLNFWGTWCKPCEKE 79 (173)
T ss_pred EeHHHcCCCEEEEEEECCcCHHHHHH
Confidence 344444554 7788899999964443
Done!