BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047858
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%)
Query: 61 IAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFME 120
I P N T + +++++DD L + P+ ++G G+Y+I + + F +
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301
Query: 121 GTYNGSSISILGRNPVMDDVREMPIV 146
Y G++ + G N D +V
Sbjct: 302 EEYIGNTYTCRGHNYYFDKTLTTTVV 327
>pdb|4H69|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H69|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens Complexed With Substrate Analog
pdb|4H6A|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
pdb|4H6A|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 2 From
Physcomitrella Patens
Length = 194
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 115 NFAFMEGTYNGSSISILGRNPVMDDVREMPIVGGSGLFRSAHGYALAHTIAFDFK 169
++F G Y IS+ G +D E+ + GG+G+F HG A H I F K
Sbjct: 95 QYSFYFGDYG--HISVQGPYITYEDT-ELVVTGGTGIFAGCHGVAKLHQIIFPVK 146
>pdb|1TW0|A Chain A, Native Crystal Structure Of Spe16
pdb|1TW0|B Chain B, Native Crystal Structure Of Spe16
pdb|1TXC|A Chain A, Complex Crystal Structure Of Spe16 With Ans
pdb|1TXC|B Chain B, Complex Crystal Structure Of Spe16 With Ans
Length = 157
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 132 GRNPVMDDVREMPIVGGSGLFRSAHGYALAH 162
G P+ D VR+ + G+G F++ GY LA+
Sbjct: 123 GDAPLSDAVRDDALAKGAGFFKAIEGYVLAN 153
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 29.6 bits (65), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 52 SGKNPTTARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLL 111
+GKN ++ARI G Y +++ P + GP LVG G Q +
Sbjct: 264 NGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGP-----LVG---GFVYRGCQSER--- 312
Query: 112 MVMNFAFMEGTYNGSSISILGRNPVMDDVREMPI-VGGSGLFRSAHGYALAHTIAF 166
+ +++ G NG+ ++ L ++PV +E P+ +G SG S GY H + F
Sbjct: 313 --LYGSYVFGDRNGNFLT-LQQSPVTKQWQEKPLCLGTSG---SCRGYFSGHILGF 362
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 52 SGKNPTTARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLL 111
+GKN ++ARI G Y +++ P + GP LVG G Q +
Sbjct: 264 NGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGP-----LVG---GFVYRGCQSER--- 312
Query: 112 MVMNFAFMEGTYNGSSISILGRNPVMDDVREMPI-VGGSGLFRSAHGYALAHTIAF 166
+ +++ G NG+ ++ L ++PV +E P+ +G SG S GY H + F
Sbjct: 313 --LYGSYVFGDRNGNFLT-LQQSPVTKQWQEKPLCLGTSG---SCRGYFSGHILGF 362
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 52 SGKNPTTARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLL 111
+GKN ++ARI G Y +++ P + GP LVG G Q +
Sbjct: 243 NGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGP-----LVG---GFVYRGCQSER--- 291
Query: 112 MVMNFAFMEGTYNGSSISILGRNPVMDDVREMPI-VGGSGLFRSAHGYALAHTIAF 166
+ +++ G NG+ ++ L ++PV +E P+ +G SG S GY H + F
Sbjct: 292 --LYGSYVFGDRNGNFLT-LQQSPVTKQWQEKPLCLGTSG---SCRGYFSGHILGF 341
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 52 SGKNPTTARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLL 111
+GKN ++ARI G Y +++ P + GP LVG G Q +
Sbjct: 243 NGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGP-----LVG---GFVYRGCQSER--- 291
Query: 112 MVMNFAFMEGTYNGSSISILGRNPVMDDVREMPI-VGGSGLFRSAHGYALAHTIAF 166
+ +++ G NG+ ++ L ++PV +E P+ +G SG S GY H + F
Sbjct: 292 --LYGSYVFGDRNGNFLT-LQQSPVTKQWQEKPLCLGTSG---SCRGYFSGHILGF 341
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 52 SGKNPTTARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLL 111
+GKN ++ARI G Y +++ P + GP LVG G Q +
Sbjct: 243 NGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGP-----LVG---GFVYRGCQSER--- 291
Query: 112 MVMNFAFMEGTYNGSSISILGRNPVMDDVREMPI-VGGSGLFRSAHGYALAHTIAF 166
+ +++ G NG+ ++ L ++PV +E P+ +G SG S GY H + F
Sbjct: 292 --LYGSYVFGDRNGNFLT-LQQSPVTKQWQEKPLCLGTSG---SCRGYFSGHILGF 341
>pdb|4H6B|A Chain A, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|D Chain D, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|C Chain C, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|B Chain B, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|E Chain E, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|F Chain F, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|G Chain G, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|H Chain H, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|I Chain I, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|J Chain J, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|K Chain K, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6B|L Chain L, Structural Basis For Allene Oxide Cyclization In Moss
pdb|4H6C|A Chain A, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|D Chain D, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|C Chain C, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|B Chain B, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|E Chain E, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|F Chain F, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|G Chain G, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|H Chain H, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|I Chain I, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|J Chain J, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|K Chain K, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
pdb|4H6C|L Chain L, Crystal Structure Of The Allene Oxide Cyclase 1 From
Physcomitrella Patens
Length = 195
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 116 FAFMEGTYNGSSISILGRNPVMDDVREMPIVGGSGLFRSAHGYALAHTIAFDFK 169
++F G Y IS+ G +D + I GGSG+F +G A H I F FK
Sbjct: 97 YSFYFGDYG--HISVQGPYITYED-SYLAITGGSGIFAGCYGQAKLHQIIFPFK 147
>pdb|1VDE|A Chain A, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1VDE|B Chain B, Pi-Scei, A Homing Endonuclease With Protein Splicing
Activity
pdb|1DFA|A Chain A, Crystal Structure Of Pi-Scei In C2 Space Group
Length = 454
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 65 PNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYN 124
P+G V P++EGPE ++LV S R AS N A+ E T
Sbjct: 115 PDGRIVELVKEVSKSYPISEGPERANELV---------ESYRKAS-----NKAYFEWTIE 160
Query: 125 GSSISILG 132
+S+LG
Sbjct: 161 ARDLSLLG 168
>pdb|1EF0|A Chain A, Crystal Structure Of Pi-Scei Miniprecursor
pdb|1EF0|B Chain B, Crystal Structure Of Pi-Scei Miniprecursor
Length = 462
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 65 PNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYN 124
P+G V P++EGPE ++LV S R AS N A+ E T
Sbjct: 119 PDGRIVELVKEVSKSYPISEGPERANELV---------ESYRKAS-----NKAYFEWTIE 164
Query: 125 GSSISILG 132
+S+LG
Sbjct: 165 ARDLSLLG 172
>pdb|1UM2|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
pdb|1UM2|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease With
The Ligated Extein Segment
Length = 454
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 65 PNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYN 124
P+G V P++EGPE ++LV S R AS N A+ E T
Sbjct: 115 PDGRIVELVKEVSKSYPISEGPERANELV---------ESYRKAS-----NKAYFEWTIE 160
Query: 125 GSSISILG 132
+S+LG
Sbjct: 161 ARDLSLLG 168
>pdb|1LWS|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Recognition Sequence
pdb|1LWT|A Chain A, Crystal Structure Of The Intein Homing Endonuclease
Pi-Scei Bound To Its Substrate Dna (Ca2+ Free)
Length = 454
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 65 PNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYN 124
P+G V P++EGPE ++LV S R AS N A+ E T
Sbjct: 115 PDGRIVELVKEVSKSYPISEGPERANELV---------ESYRKAS-----NKAYFEWTIE 160
Query: 125 GSSISILG 132
+S+LG
Sbjct: 161 ARDLSLLG 168
>pdb|1JVA|A Chain A, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
pdb|1JVA|B Chain B, Crystal Structure Of The Vma1-Derived Endonuclease Bearing
The N And C Extein Propeptides
Length = 475
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 65 PNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYN 124
P+G V P++EGPE ++LV S R AS N A+ E T
Sbjct: 126 PDGRIVELVKEVSKSYPISEGPERANELV---------ESYRKAS-----NKAYFEWTIE 171
Query: 125 GSSISILG 132
+S+LG
Sbjct: 172 ARDLSLLG 179
>pdb|1IFV|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
pdb|1IFV|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr10.1b From Yellow Lupine
Length = 155
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 138 DDVREMPIVGGSGLFRSAHGYALAH 162
D VRE G+GLF++ GY LA+
Sbjct: 128 DAVREEAKARGTGLFKAVEGYVLAN 152
>pdb|2F6A|A Chain A, Collagen Adhesin And Collagen Complex Structure
pdb|2F6A|B Chain B, Collagen Adhesin And Collagen Complex Structure
pdb|2F6A|C Chain C, Collagen Adhesin And Collagen Complex Structure
pdb|2F6A|D Chain D, Collagen Adhesin And Collagen Complex Structure
Length = 303
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 60 RIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFM 119
++A P +GT G + + PLT E + V G + + L V FA
Sbjct: 47 KVAWPTSGTVKIEGYSKTV--PLTVKGEQVGQAVITPDGATITFNDKVEKLSDVSGFAEF 104
Query: 120 EGTYNGSSISILGRNPVM----DDVREMPIVGGSGLFRSAHGYALAHTIAFDFKTGDAIV 175
E + GRN DD G + H + F +KTGD +
Sbjct: 105 E---------VQGRNLTQTNTSDDKVATITSGNKSTNVTVHKSEAGTSSVFYYKTGDMLP 155
Query: 176 EYNVHVTYY 184
E HV ++
Sbjct: 156 EDTTHVRWF 164
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 41 THLHFYFHDIVSGKNPTTARIAGPPNGTAYSFGSTVMIDDPLT 83
TH D + NP ++ G PNG + G+T+ + +PLT
Sbjct: 112 THALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISV-NPLT 153
>pdb|2F68|X Chain X, Crystal Structure Of Collagen Adhesin (Cna) From S. Aureus
Length = 313
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 15/129 (11%)
Query: 60 RIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFM 119
++A P +GT G + + PLT E + V G + + L V FA
Sbjct: 53 KVAWPTSGTVKIEGYSKTV--PLTVKGEQVGQAVITPDGATITFNDKVEKLSDVSGFAEF 110
Query: 120 EGTYNGSSISILGRNPVM----DDVREMPIVGGSGLFRSAHGYALAHTIAFDFKTGDAIV 175
E + GRN DD G + H + F +KTGD +
Sbjct: 111 E---------VQGRNLTQTNTSDDKVATITSGNKSTNVTVHKSEAGTSSVFYYKTGDMLP 161
Query: 176 EYNVHVTYY 184
E HV ++
Sbjct: 162 EDTTHVRWF 170
>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|B Chain B, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
pdb|1GYR|C Chain C, Mutant Form Of Enoyl Thioester Reductase From Candida
Tropicalis
Length = 364
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 41 THLHFYFHDIVSGKNPTTARIAGPPNGTAYSFGSTVMIDDPLT 83
TH D + NP ++ G PNG + G+T+ + +PLT
Sbjct: 112 THALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISV-NPLT 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,575,641
Number of Sequences: 62578
Number of extensions: 225347
Number of successful extensions: 361
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 27
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)