BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047858
         (184 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 73.9 bits (180), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 14/160 (8%)

Query: 35  KRFEKTTHLHFYFHDIV-SGKNPT--TARIAGPPNGTAYS-------FGSTVMIDDPLTE 84
           K ++   +L FYFHDI+ +GKN    T+ I   P G + +       FG+ ++ DDP+T 
Sbjct: 26  KPYKPCKNLVFYFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITL 85

Query: 85  GPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYNGSSISILGRNPVMDDVREMP 144
               +SK VGRAQG Y   ++   +  +   F  +  T++  +I+  G +P++   R++ 
Sbjct: 86  SHSLSSKQVGRAQGFYIYDTKNTYTSWLSFTFV-LNSTHHQGTITFAGADPIVAKTRDIS 144

Query: 145 IVGGSGLFRSAHGYALAHTIAFDFKTGDAIVEYNVHVTYY 184
           + GG+G F    G A   T AF+   G+A     V++ ++
Sbjct: 145 VTGGTGDFFMHRGIATITTDAFE---GEAYFRLGVYIKFF 181


>sp|P21077|SANS_VACCC Surface antigen S OS=Vaccinia virus (strain Copenhagen) GN=B19R
           PE=3 SV=1
          Length = 353

 Score = 34.7 bits (78), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 34/74 (45%)

Query: 61  IAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFME 120
           I  P N T  +  ++++IDD L E   P+  L+G    +Y++ + R       + F  + 
Sbjct: 266 IGEPANITCTAVSTSLLIDDVLIEWENPSGWLIGFDFDVYSVLTSRGGITEATLYFENVT 325

Query: 121 GTYNGSSISILGRN 134
             Y G++    G N
Sbjct: 326 EEYIGNTYKCRGHN 339


>sp|P25213|B19_VACCW Soluble interferon alpha/beta receptor B19 OS=Vaccinia virus
           (strain Western Reserve) GN=VACWR200 PE=1 SV=1
          Length = 351

 Score = 34.7 bits (78), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 34/74 (45%)

Query: 61  IAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFME 120
           I  P N T  +  ++++IDD L E   P+  L+G    +Y++ + R       + F  + 
Sbjct: 264 IGEPANITCTAVSTSLLIDDVLIEWENPSGWLIGFDFDVYSVLTSRGGITEATLYFENVT 323

Query: 121 GTYNGSSISILGRN 134
             Y G++    G N
Sbjct: 324 EEYIGNTYKCRGHN 337


>sp|P23998|SANS_VACCD Surface antigen S OS=Vaccinia virus (strain Dairen I) GN=B19R PE=3
           SV=1
          Length = 351

 Score = 34.7 bits (78), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 34/74 (45%)

Query: 61  IAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFME 120
           I  P N T  +  ++++IDD L E   P+  L+G    +Y++ + R       + F  + 
Sbjct: 264 IGEPANITCTAVSTSLLIDDVLIEWENPSGWLIGFDFDVYSVLTSRGGITEATLYFENVT 323

Query: 121 GTYNGSSISILGRN 134
             Y G++    G N
Sbjct: 324 EEYIGNTYKCRGHN 337


>sp|P33795|SANS_VAR67 Surface antigen S OS=Variola virus (isolate Human/India/Ind3/1967)
           GN=B19R PE=3 SV=2
          Length = 354

 Score = 32.7 bits (73), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/74 (24%), Positives = 33/74 (44%)

Query: 61  IAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFME 120
           I  P N T  +  ++++ DD L E   P+  L+G    +Y++ + R       + F  + 
Sbjct: 267 IGEPANITCTAVSTSLLFDDVLIEWENPSGWLIGFDFDVYSVLTSRGGITEATLYFKNVT 326

Query: 121 GTYNGSSISILGRN 134
             Y G++    G N
Sbjct: 327 EEYIGNTYKCRGHN 340


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,971,394
Number of Sequences: 539616
Number of extensions: 2969841
Number of successful extensions: 6072
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6065
Number of HSP's gapped (non-prelim): 7
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)