Query 047858
Match_columns 184
No_of_seqs 127 out of 541
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 03:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 1.5E-53 3.2E-58 338.1 19.2 144 39-183 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 97.8 0.00079 1.7E-08 54.6 12.8 120 37-167 4-128 (176)
3 PLN02343 allene oxide cyclase 97.1 0.015 3.2E-07 49.1 12.0 122 37-167 54-179 (229)
4 PF11528 DUF3224: Protein of u 67.8 58 0.0013 25.6 10.4 88 90-183 40-133 (134)
5 PTZ00312 inositol-1,4,5-tripho 26.3 1.7E+02 0.0036 26.8 5.5 14 75-88 38-51 (356)
6 PF08239 SH3_3: Bacterial SH3 20.8 81 0.0018 19.7 1.9 17 81-97 4-20 (55)
7 PF06347 SH3_4: Bacterial SH3 20.2 71 0.0015 20.4 1.5 17 81-97 6-22 (55)
8 CHL00020 psbN photosystem II p 18.8 1.2E+02 0.0027 19.5 2.3 35 1-35 1-35 (43)
9 PRK13183 psbN photosystem II r 15.5 1.6E+02 0.0035 19.3 2.3 32 4-35 7-38 (46)
10 PF11849 DUF3369: Domain of un 12.4 2.3E+02 0.0049 22.6 3.0 25 134-158 67-91 (174)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=1.5e-53 Score=338.10 Aligned_cols=144 Identities=53% Similarity=0.950 Sum_probs=135.9
Q ss_pred ceeEEEEEeeeecCCCCcceEEecCCCCCCCCCcceEEEEecccccCCCCCCcceEEEEEEEEEecCCCceEEEEEEEEe
Q 047858 39 KTTHLHFYFHDIVSGKNPTTARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAF 118 (184)
Q Consensus 39 k~t~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~FG~~~v~Dd~lt~Gp~~~S~~VGRaqG~~~~~~~~~~~~~~~~~~vF 118 (184)
|++||+|||||+++|||+|++.|+.++.....+||+++|+||||||||+++||+||||||+|+.+++++.+|+++++++|
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~vF 80 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGPSSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLVF 80 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCCCCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEEE
Confidence 68999999999999999999999988644444999999999999999999999999999999999999999999999999
Q ss_pred ccccccCceEEEecccCCCCCceeeEEEeccccccceEEEEEEEEEEeecCCCCeEEEEEEEEEe
Q 047858 119 MEGTYNGSSISILGRNPVMDDVREMPIVGGSGLFRSAHGYALAHTIAFDFKTGDAIVEYNVHVTY 183 (184)
Q Consensus 119 ~~g~~~GSTl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~h 183 (184)
++++||||||+++|+++..+++||||||||||+||||||||+++++ .+.+.+++|+||||||+|
T Consensus 81 ~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 81 EDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 9999999999999999988999999999999999999999999999 344578999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=97.80 E-value=0.00079 Score=54.63 Aligned_cols=120 Identities=23% Similarity=0.403 Sum_probs=75.1
Q ss_pred CCceeEEEEEeeeecCCCCcce-EEecCCCCCCCCCcceEEEEecccccCCCCCCcceEEEEEEEEEecC----CCceEE
Q 047858 37 FEKTTHLHFYFHDIVSGKNPTT-ARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQ----RDASLL 111 (184)
Q Consensus 37 ~~k~t~l~fY~Hd~~~g~n~t~-~~v~~~~~~~~~~FG~~~v~Dd~lt~Gp~~~S~~VGRaqG~~~~~~~----~~~~~~ 111 (184)
+.|...|++|=-+... .+..+ .+.- ..+....|+.+-+.|+|++|.. -+.+|--+|+-+.-.. .+..+=
T Consensus 4 p~kvqel~vyeiNErd-R~SPa~L~ls---~k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~GdryE 77 (176)
T PF06351_consen 4 PTKVQELSVYEINERD-RGSPAYLRLS---QKSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRYE 77 (176)
T ss_dssp ----EEEEEEEE--S--S--S--B--S---SSSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEEE
T ss_pred ccceEEEEEEEEcccc-cCCCcEEEcc---cccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceEE
Confidence 4556667777433332 22223 3322 2344568999999999999976 6889999999775443 334455
Q ss_pred EEEEEEeccccccCceEEEecccCCCCCceeeEEEeccccccceEEEEEEEEEEee
Q 047858 112 MVMNFAFMEGTYNGSSISILGRNPVMDDVREMPIVGGSGLFRSAHGYALAHTIAFD 167 (184)
Q Consensus 112 ~~~~~vF~~g~~~GSTl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~~ 167 (184)
-.+++.|-+ | | .|+++|..-.. +..-++|.||||-|+.|+|-+++..+-+-
T Consensus 78 aiySfyfGd--y-G-hISvqGpy~t~-eDtyLAVTGGtGiF~g~~GqVkL~qivfP 128 (176)
T PF06351_consen 78 AIYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAVTGGTGIFEGVYGQVKLHQIVFP 128 (176)
T ss_dssp EEEEEE-GG--G-E-EEEEEEEEETT-S-EEEEEEEEEETTTT-EEEEEEEEEETT
T ss_pred EEEEEEecc--c-c-eEEEecccccc-cceeEEEeccCceeecceEEEEEEEeecc
Confidence 666777854 2 3 69999997653 56789999999999999999998877543
No 3
>PLN02343 allene oxide cyclase
Probab=97.07 E-value=0.015 Score=49.08 Aligned_cols=122 Identities=23% Similarity=0.358 Sum_probs=83.3
Q ss_pred CCceeEEEEEeeeecCCCCcceEEecCCCCCCCCCcceEEEEecccccCCCCCCcceEEEEEEEEEecC----CCceEEE
Q 047858 37 FEKTTHLHFYFHDIVSGKNPTTARIAGPPNGTAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQ----RDASLLM 112 (184)
Q Consensus 37 ~~k~t~l~fY~Hd~~~g~n~t~~~v~~~~~~~~~~FG~~~v~Dd~lt~Gp~~~S~~VGRaqG~~~~~~~----~~~~~~~ 112 (184)
+.|...|.+|=-+..- .+..++.=... .......|+.+-|.+.|++|. --|.+|--.|+-+.-.. .+..+=.
T Consensus 54 p~kvQel~VYEiNErD-R~SPa~L~ls~-k~~~~sLGDlVPFsNKlY~g~--L~kRlGiTaG~Cvliq~~pek~gDryEa 129 (229)
T PLN02343 54 PTKVQELSVYEINERD-RGSPAFLKLSK-KSVENALGDLVPFTNKLYTGD--LKKRLGITAGLCVLIQHVPEKKGDRYEA 129 (229)
T ss_pred CceeEEEEEEEecccc-CCCcceEEccc-Ccccccccceeccccccccch--hhhhhcccceeEEEEEeccccCCceeEE
Confidence 4555666666333221 22233222111 112356899999999999986 35778999998775443 3456777
Q ss_pred EEEEEeccccccCceEEEecccCCCCCceeeEEEeccccccceEEEEEEEEEEee
Q 047858 113 VMNFAFMEGTYNGSSISILGRNPVMDDVREMPIVGGSGLFRSAHGYALAHTIAFD 167 (184)
Q Consensus 113 ~~~~vF~~g~~~GSTl~v~G~~~~~~~~~E~aVVGGTG~Fr~ArGya~~~t~~~~ 167 (184)
.+++.|-| | | .|++||..-.- +..-++|.||+|-|+.|+|-+++..+-+-
T Consensus 130 ~ySfyfGD--y-G-HisvqGpylty-eDt~LaiTGGsGiFega~GqvkL~qivfP 179 (229)
T PLN02343 130 IYSFYFGD--Y-G-HISVQGPYLTY-EDTYLAITGGSGIFEGAYGQVKLHQIVFP 179 (229)
T ss_pred EEEEEecC--c-c-eeEEecccccc-ccceEEeecCcceeecceeEEEEeeeeee
Confidence 78888854 2 3 59999997653 45689999999999999999998877654
No 4
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=67.82 E-value=58 Score=25.60 Aligned_cols=88 Identities=15% Similarity=0.202 Sum_probs=49.8
Q ss_pred CcceEEEEEEEEEecC-CCceEEEEEEEEe-ccccccCceEEEe--cccCCCCCceeeEEE--eccccccceEEEEEEEE
Q 047858 90 SKLVGRAQGMYAIASQ-RDASLLMVMNFAF-MEGTYNGSSISIL--GRNPVMDDVREMPIV--GGSGLFRSAHGYALAHT 163 (184)
Q Consensus 90 S~~VGRaqG~~~~~~~-~~~~~~~~~~~vF-~~g~~~GSTl~v~--G~~~~~~~~~E~aVV--GGTG~Fr~ArGya~~~t 163 (184)
-.+.|++++-++.+-. ++...+..+..+= .-...+|| +.++ |.........+|-|| -|||++...+|-..++.
T Consensus 40 G~l~Gts~~~~L~~y~~~g~a~yva~E~~~Gtl~Gr~Gs-Fvl~h~G~~~~g~~~~~~~VVPgSGTGeL~Gl~Gsg~~~~ 118 (134)
T PF11528_consen 40 GDLEGTSTGEYLMAYDPDGSAGYVAFERFTGTLDGRSGS-FVLQHSGTFDAGTASSSFTVVPGSGTGELAGLSGSGTITI 118 (134)
T ss_dssp TTEEEEEEEEEEEEEECTTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEE-TT--EETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCCchhhcCCEEEEEEEE
Confidence 4467888888776654 3444444443211 11123454 4444 333222345689999 99999999999988644
Q ss_pred EEeecCCCCeEEEEEEEEEe
Q 047858 164 IAFDFKTGDAIVEYNVHVTY 183 (184)
Q Consensus 164 ~~~~~~~~~~v~e~~v~v~h 183 (184)
.. +...++|+..+-+
T Consensus 119 ~~-----g~h~y~f~y~l~d 133 (134)
T PF11528_consen 119 DE-----GQHAYDFEYTLPD 133 (134)
T ss_dssp ET-----TCEEEEEEEEEEE
T ss_pred CC-----CCceeeEEEECCC
Confidence 33 4557788877643
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=26.28 E-value=1.7e+02 Score=26.76 Aligned_cols=14 Identities=50% Similarity=0.916 Sum_probs=11.3
Q ss_pred EEEEecccccCCCC
Q 047858 75 TVMIDDPLTEGPEP 88 (184)
Q Consensus 75 ~~v~Dd~lt~Gp~~ 88 (184)
+-|.|||+|-|-++
T Consensus 38 v~v~ddp~ty~~~~ 51 (356)
T PTZ00312 38 VPVVDDPLTYGSSP 51 (356)
T ss_pred eeeccCccccCCCC
Confidence 67889999988765
No 6
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=20.80 E-value=81 Score=19.73 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=13.9
Q ss_pred ccccCCCCCCcceEEEE
Q 047858 81 PLTEGPEPTSKLVGRAQ 97 (184)
Q Consensus 81 ~lt~Gp~~~S~~VGRaq 97 (184)
.|+.+|+.+|+.++.+.
T Consensus 4 nvR~~p~~~s~~i~~l~ 20 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQLP 20 (55)
T ss_dssp EEESSSSTTSTEEEEEE
T ss_pred EEEeCCCCCChhhEEEe
Confidence 47888999999998863
No 7
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=20.17 E-value=71 Score=20.36 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=14.5
Q ss_pred ccccCCCCCCcceEEEE
Q 047858 81 PLTEGPEPTSKLVGRAQ 97 (184)
Q Consensus 81 ~lt~Gp~~~S~~VGRaq 97 (184)
+|+.+|+.+|+++.++.
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 67899999999998874
No 8
>CHL00020 psbN photosystem II protein N
Probab=18.82 E-value=1.2e+02 Score=19.51 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=18.1
Q ss_pred CCchhhhHHHHHhhhhhccccceeeeccccccccc
Q 047858 1 MPSSISYTLFTIFSTLLTTSNGAFCEKYTEGIVIK 35 (184)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (184)
|+..+++.+.+..+......=+.|..-.|++-+++
T Consensus 1 me~A~~~~i~i~~ll~~~Tgy~iYtaFGppSk~Lr 35 (43)
T CHL00020 1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLR 35 (43)
T ss_pred CCchhhHHHHHHHHHHHhhheeeeeccCCchhccC
Confidence 34333333333333334444455666778777776
No 9
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=15.51 E-value=1.6e+02 Score=19.27 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=17.0
Q ss_pred hhhhHHHHHhhhhhccccceeeeccccccccc
Q 047858 4 SISYTLFTIFSTLLTTSNGAFCEKYTEGIVIK 35 (184)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (184)
.+++.+.+..+......=+.|..-.|++-+++
T Consensus 7 A~~~~i~i~~lL~~~TgyaiYtaFGppSk~Lr 38 (46)
T PRK13183 7 ALSLAITILAILLALTGFGIYTAFGPPSKELD 38 (46)
T ss_pred hHHHHHHHHHHHHHHhhheeeeccCCcccccC
Confidence 33333333333334444455666778777776
No 10
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 170 amino acids in length.
Probab=12.43 E-value=2.3e+02 Score=22.57 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=17.2
Q ss_pred cCCCCCceeeEEEeccccccceEEE
Q 047858 134 NPVMDDVREMPIVGGSGLFRSAHGY 158 (184)
Q Consensus 134 ~~~~~~~~E~aVVGGTG~Fr~ArGy 158 (184)
.+......++-|++|||+|.-.-|-
T Consensus 67 ~~~~~~~~~~~VlaatG~f~~~~~~ 91 (174)
T PF11849_consen 67 FPDDSDDNEFRVLAATGRFESLIGQ 91 (174)
T ss_pred cCCCCCCCCEEEEEEeccchhhcCC
Confidence 3333345679999999999855543
Done!