Query 047858
Match_columns 184
No_of_seqs 127 out of 541
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:12:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 98.7 4.2E-07 1.4E-11 73.4 15.0 103 68-182 41-147 (188)
2 4h6b_A Allene oxide cyclase; B 98.4 8E-06 2.7E-10 66.2 13.9 91 70-167 51-145 (195)
3 3h6j_A Neuraminidase, sialidas 30.8 34 0.0012 29.2 3.1 55 106-162 371-435 (438)
4 2q03_A Uncharacterized protein 24.5 2.2E+02 0.0077 21.3 10.9 86 90-180 45-136 (138)
5 2xdp_A Lysine-specific demethy 17.6 1.9E+02 0.0065 21.4 4.7 57 68-144 63-119 (123)
6 2ooj_A Hypothetical protein; s 17.3 3.3E+02 0.011 20.4 12.8 85 90-181 41-133 (141)
7 2krs_A Probable enterotoxin; a 15.8 64 0.0022 21.1 1.5 16 81-96 12-27 (74)
8 2qqr_A JMJC domain-containing 14.3 1.8E+02 0.006 21.5 3.8 56 68-143 62-117 (118)
9 2kq8_A Cell WALL hydrolase; GF 12.2 61 0.0021 20.9 0.6 16 81-96 13-28 (70)
10 2kt8_A Probable surface protei 11.5 85 0.0029 20.7 1.2 16 81-96 14-29 (76)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=98.74 E-value=4.2e-07 Score=73.41 Aligned_cols=103 Identities=20% Similarity=0.364 Sum_probs=80.7
Q ss_pred CCCCcceEEEEecccccCCCCCCcceEEEEEEEEEec----CCCceEEEEEEEEeccccccCceEEEecccCCCCCceee
Q 047858 68 TAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIAS----QRDASLLMVMNFAFMEGTYNGSSISILGRNPVMDDVREM 143 (184)
Q Consensus 68 ~~~~FG~~~v~Dd~lt~Gp~~~S~~VGRaqG~~~~~~----~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~~E~ 143 (184)
+....|+.+.++++|.+|.. -+.||.-+|+-+... ..+..+-..+++.|-+. | .|++||..... +...+
T Consensus 41 ~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdryE~tyS~yfgd~---G-hISvQGpy~t~-~Dt~L 113 (188)
T 2brj_A 41 LMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERFEATYSFYFGDY---G-HLSVQGPYLTY-EDSFL 113 (188)
T ss_dssp SSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEEEEEEEEECGGG---E-EEEEEEEEETT-BCEEE
T ss_pred cCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEEEEEEEEEeCCC---c-eEEEecccccc-cccee
Confidence 34568999999999997764 589999999987665 33456777778888542 3 69999995332 55799
Q ss_pred EEEeccccccceEEEEEEEEEEeecCCCCeEEEEEEEEE
Q 047858 144 PIVGGSGLFRSAHGYALAHTIAFDFKTGDAIVEYNVHVT 182 (184)
Q Consensus 144 aVVGGTG~Fr~ArGya~~~t~~~~~~~~~~v~e~~v~v~ 182 (184)
||.||||.|+.|+|.+++.+..+.. -++|.+||.
T Consensus 114 AITGGTGif~gA~G~Vkl~~i~~P~-----k~~yTf~L~ 147 (188)
T 2brj_A 114 AITGGAGIFEGAYGQVKLQQLVYPT-----KLFYTFYLK 147 (188)
T ss_dssp EEEEEEETTTTCEEEEEEEEEETTT-----EEEEEEEEE
T ss_pred eEecCcceEcceEEEEEEEeeccCc-----eEEEEEEEe
Confidence 9999999999999999999888541 377777774
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=98.40 E-value=8e-06 Score=66.19 Aligned_cols=91 Identities=26% Similarity=0.422 Sum_probs=72.0
Q ss_pred CCcceEEEEecccccCCCCCCcceEEEEEEEEEec----CCCceEEEEEEEEeccccccCceEEEecccCCCCCceeeEE
Q 047858 70 YSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIAS----QRDASLLMVMNFAFMEGTYNGSSISILGRNPVMDDVREMPI 145 (184)
Q Consensus 70 ~~FG~~~v~Dd~lt~Gp~~~S~~VGRaqG~~~~~~----~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~~E~aV 145 (184)
...|+.+.+.++|++|.. -+-||...|+-+... ..+..+--.+++.|.+ .| +|+++|..-. -+..-+||
T Consensus 51 ~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~GdryEci~Tf~fGD---~G-hIsvqGpy~t-~eDs~lAI 123 (195)
T 4h6b_A 51 NSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNGDRYEALYSFYFGD---YG-HISVQGPYIT-YEDSYLAI 123 (195)
T ss_dssp CCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTEEEEEEEEEEECGG---GC-EEEEEEEEET-TBCEEEEE
T ss_pred cccccccccccccccccc--cccccccccEEEEEeecCCCCCceEEEEEEEEecC---Cc-eEEEecceec-cCceeEEE
Confidence 469999999999999986 788999999987654 2233455666788865 25 5999999743 34567999
Q ss_pred EeccccccceEEEEEEEEEEee
Q 047858 146 VGGSGLFRSAHGYALAHTIAFD 167 (184)
Q Consensus 146 VGGTG~Fr~ArGya~~~t~~~~ 167 (184)
+||||.|+.|+|-+++..+-+-
T Consensus 124 TGGTGiF~Ga~GqVkl~qiv~p 145 (195)
T 4h6b_A 124 TGGSGIFAGCYGQAKLHQIIFP 145 (195)
T ss_dssp EEESGGGTTCEEEEEEEEEETT
T ss_pred ecCcceEcccEEEEEEeEeeee
Confidence 9999999999999998877643
No 3
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A
Probab=30.78 E-value=34 Score=29.20 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=35.4
Q ss_pred CCceEEEEEEEEeccccccCceEEEe-cccCCCCCceeeEEEeccccc---------cceEEEEEEE
Q 047858 106 RDASLLMVMNFAFMEGTYNGSSISIL-GRNPVMDDVREMPIVGGSGLF---------RSAHGYALAH 162 (184)
Q Consensus 106 ~~~~~~~~~~~vF~~g~~~GSTl~v~-G~~~~~~~~~E~aVVGGTG~F---------r~ArGya~~~ 162 (184)
....|-..|--.|++|.++||--++- |...+ ....-+-|=|||.| |.|.||...+
T Consensus 371 spstwnivmpsyfndgghkgsgaqvevgslni--rlgtgaavwgtgyfggidnsattrlatgyyrvr 435 (438)
T 3h6j_A 371 SPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNI--RLGTGAAVWGTGYFGGIDNSATTRLATGYYRVR 435 (438)
T ss_dssp SCSCCEECCCEEEESSSEEEESEEEEECSSEE--EEEECSBSBCCSCBTTTBCSGGGCBSEEEEEEE
T ss_pred CCcceeEeccceecCCCcCCccceEEeeeEEE--EeccCceeeeccccccccchhhheeccceEEEE
Confidence 34568888888999999999866552 22221 11223445577777 6788887655
No 4
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=24.51 E-value=2.2e+02 Score=21.29 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=49.4
Q ss_pred CcceEEEEEEEEEecC-CCceEEEEEEEEe-ccccccCceEEEe--cccCCCCCceeeEEEe--ccccccceEEEEEEEE
Q 047858 90 SKLVGRAQGMYAIASQ-RDASLLMVMNFAF-MEGTYNGSSISIL--GRNPVMDDVREMPIVG--GSGLFRSAHGYALAHT 163 (184)
Q Consensus 90 S~~VGRaqG~~~~~~~-~~~~~~~~~~~vF-~~g~~~GSTl~v~--G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~~t 163 (184)
-.+.|+.++-++.+-. ++...++.+..+= .-...+|| +.++ |..........+-||= |||++...+|-..++.
T Consensus 45 G~leGts~~~~L~~~~~~G~A~yva~E~f~Gtl~Gr~Gs-Fvlqh~Gt~~~g~~~~~~~VVPgSGTGeLaGl~G~g~~~~ 123 (138)
T 2q03_A 45 GVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGS-FILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVS 123 (138)
T ss_dssp SSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEETTEEEE-EEEEEEEEEETTEEEEEEEECTTCCEETTTTEEEEEEEEE
T ss_pred eEEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEECCceEE-EEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEEEE
Confidence 4477888888776655 4433343332111 11122443 4333 3333333457888998 9999999999998743
Q ss_pred EEeecCCCCeEEEEEEE
Q 047858 164 IAFDFKTGDAIVEYNVH 180 (184)
Q Consensus 164 ~~~~~~~~~~v~e~~v~ 180 (184)
.. ++..-++|+..
T Consensus 124 ~~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 124 TE----NGQANYQITLQ 136 (138)
T ss_dssp CS----TTEEEEEEEEE
T ss_pred ec----CCceEEEEEEe
Confidence 22 25555666654
No 5
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=17.56 E-value=1.9e+02 Score=21.45 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=36.9
Q ss_pred CCCCcceEEEEecccccCCCCCCcceEEEEEEEEEecCCCceEEEEEEEEeccccccCceEEEecccCCCCCceeeE
Q 047858 68 TAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYNGSSISILGRNPVMDDVREMP 144 (184)
Q Consensus 68 ~~~~FG~~~v~Dd~lt~Gp~~~S~~VGRaqG~~~~~~~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~~E~a 144 (184)
++..-|..+-+.|+ +|.-.+++.+|+ .....+++.|+|| | ...+-|+.+-....|+|
T Consensus 63 GpP~~G~~V~V~W~--DG~~y~a~f~g~-------------~~~~~YtV~FeDg----s-~~~~kR~~iyt~~E~lP 119 (123)
T 2xdp_A 63 GPPAEGEVVQVKWP--DGKLYGAKYFGS-------------NIAHMYQVEFEDG----S-QIAMKREDIYTLDEELP 119 (123)
T ss_dssp CCCCTTCEEEEECT--TSCEEEEEEEEE-------------EEEEEEEEECTTS----C-EEEEEGGGCCCSSSCCC
T ss_pred CCCCCCCEEEEEcC--CCCEEeEEEeee-------------eeEEEEEEEECCC----C-eEEecHHHccccccccc
Confidence 45567888888885 666555555544 3466778999975 4 44556766655555554
No 6
>2ooj_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.84A {Shewanella oneidensis} SCOP: b.159.2.1
Probab=17.31 E-value=3.3e+02 Score=20.40 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=49.0
Q ss_pred CcceEEEEEEEEEecCC--CceEEEEEE---EEeccccccCc-eEEEecccCCCCCceeeEEEe--ccccccceEEEEEE
Q 047858 90 SKLVGRAQGMYAIASQR--DASLLMVMN---FAFMEGTYNGS-SISILGRNPVMDDVREMPIVG--GSGLFRSAHGYALA 161 (184)
Q Consensus 90 S~~VGRaqG~~~~~~~~--~~~~~~~~~---~vF~~g~~~GS-Tl~v~G~~~~~~~~~E~aVVG--GTG~Fr~ArGya~~ 161 (184)
-.+.|+.++-++.+-.+ +...++.+. -.+. | .+|| .|+-.|..........+-||= |||++...+|-..+
T Consensus 41 G~leGts~~~~L~~~~~~~G~A~yva~E~f~Gtl~-G-r~GsFvlqh~Gt~~~g~~~~~~~VVPgSGTGeL~Gl~G~g~~ 118 (141)
T 2ooj_A 41 GELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLC-G-RQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAI 118 (141)
T ss_dssp SSEEEEEEEEEEEEECSSTTCEEEEEEEEEEEEET-T-EEEEEEEEEEEEECC--CEEEEEECTTCCEETTTTEEEEEEE
T ss_pred eeEEEEEEEEEEEEEcCCCCcEEEEEEEEEEEEEC-C-ceEEEEEEEEEEEcCCcceEEEEEeCCCccccccCcEEEEEE
Confidence 34677778888777663 333443332 2221 2 2453 123344444334557888998 99999999999987
Q ss_pred EEEEeecCCCCeEEEEEEEE
Q 047858 162 HTIAFDFKTGDAIVEYNVHV 181 (184)
Q Consensus 162 ~t~~~~~~~~~~v~e~~v~v 181 (184)
+.. .+..-+.||..+
T Consensus 119 ~~~-----~G~h~y~ldy~l 133 (141)
T 2ooj_A 119 SIE-----NGQHFYEFSFCF 133 (141)
T ss_dssp EEE-----TTEEEEEEEEEE
T ss_pred EEc-----CCeEEEEEEEEc
Confidence 533 244445555443
No 7
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=15.80 E-value=64 Score=21.08 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=14.1
Q ss_pred ccccCCCCCCcceEEE
Q 047858 81 PLTEGPEPTSKLVGRA 96 (184)
Q Consensus 81 ~lt~Gp~~~S~~VGRa 96 (184)
.|+.+|+.+++++|++
T Consensus 12 nvRs~P~~~~~vi~~l 27 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTL 27 (74)
T ss_dssp EEESSSSTTTCEEEEE
T ss_pred EEEcCCCCCChHHEEE
Confidence 6889999999999886
No 8
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=14.26 E-value=1.8e+02 Score=21.47 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=34.6
Q ss_pred CCCCcceEEEEecccccCCCCCCcceEEEEEEEEEecCCCceEEEEEEEEeccccccCceEEEecccCCCCCceee
Q 047858 68 TAYSFGSTVMIDDPLTEGPEPTSKLVGRAQGMYAIASQRDASLLMVMNFAFMEGTYNGSSISILGRNPVMDDVREM 143 (184)
Q Consensus 68 ~~~~FG~~~v~Dd~lt~Gp~~~S~~VGRaqG~~~~~~~~~~~~~~~~~~vF~~g~~~GSTl~v~G~~~~~~~~~E~ 143 (184)
++..-|..+-+.|+ +|.-.+++-+|+ .....+++.|+|| |.+ .+-|+.+-....|+
T Consensus 62 GpP~~G~~V~V~W~--DG~~y~a~f~g~-------------~~~~~Y~V~feDg----s~~-~~kR~~iyt~~E~l 117 (118)
T 2qqr_A 62 GPPAEGEVVQVRWT--DGQVYGAKFVAS-------------HPIQMYQVEFEDG----SQL-VVKRDDVYTLDEEL 117 (118)
T ss_dssp CCCCTTCEEEEECT--TSCEEEEEEEEE-------------EEEEEEEEEETTS----CEE-EECGGGEEETTSCC
T ss_pred CCCCCCCEEEEEcC--CCCEeeeEEece-------------eEEEEEEEEECCC----CEE-EEcHHHeeccccCC
Confidence 35567888888885 776555555554 3466678999974 433 44555544444444
No 9
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=12.18 E-value=61 Score=20.88 Aligned_cols=16 Identities=13% Similarity=0.382 Sum_probs=13.8
Q ss_pred ccccCCCCCCcceEEE
Q 047858 81 PLTEGPEPTSKLVGRA 96 (184)
Q Consensus 81 ~lt~Gp~~~S~~VGRa 96 (184)
.|+.||+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 6889999999999875
No 10
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.50 E-value=85 Score=20.67 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.5
Q ss_pred ccccCCCCCCcceEEE
Q 047858 81 PLTEGPEPTSKLVGRA 96 (184)
Q Consensus 81 ~lt~Gp~~~S~~VGRa 96 (184)
.|+.+|+.+++++|.+
T Consensus 14 nvR~~Ps~~~~ii~~l 29 (76)
T 2kt8_A 14 NVREGASTSSKVIGSL 29 (76)
T ss_dssp EEESSSSTTSCEEEEE
T ss_pred EEEcCCCCCChhhEEE
Confidence 6889999999988864
Done!