BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047859
         (214 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P17617|YPUF_BACSU Uncharacterized protein YpuF OS=Bacillus subtilis (strain 168)
          GN=ypuF PE=4 SV=1
          Length = 174

 Score = 36.6 bits (83), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 41 FDEAVALFNERAYYKCHDCLESLWYTAEEPTRTLIH---GVLQCAVGFYHLFNQNHKGA 96
           D  V     R Y++CH+ LE  W   E+P +       G +Q AV  YH   QN  GA
Sbjct: 7  IDYLVEFHATRDYFECHEILEEYW--KEDPPKKRKRYWVGFIQLAVALYHHRRQNTAGA 63


>sp|Q31IR4|PDXH1_THICR Pyridoxine/pyridoxamine 5'-phosphate oxidase 1 OS=Thiomicrospira
           crunogena (strain XCL-2) GN=pdxH1 PE=3 SV=1
          Length = 216

 Score = 32.7 bits (73), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 103 GLGKLRKMNLRSGPFHEFENEISAALEFIYRTQIELAACADDICLAMDQSERSYQLLGDY 162
           G   LR+ +L++ PFH+F + +  ALE   +TQ +  A +     A  Q      LL  +
Sbjct: 14  GFAALRRADLQTDPFHQFSDWMETALE---KTQQDATAMSVSTVSADGQPHSRIVLLKTF 70

Query: 163 AAGQQLY--HLESDHNQ 177
            +   ++  H +SD  Q
Sbjct: 71  NSDGFIFYTHYDSDKGQ 87


>sp|O59245|RTCB_PYRHO tRNA-splicing ligase RtcB OS=Pyrococcus horikoshii (strain ATCC
           700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
           GN=rtcB PE=1 SV=1
          Length = 871

 Score = 32.0 bits (71), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 167 QLYHLESDHNQIMYIVFDPQRSYGSDDKSIKVKLPT---LNATEEH 209
           ++Y++E  HN    +VF  +R  GS++K+I++   +   +  +E+H
Sbjct: 128 RVYNIEEGHNDFSKVVFVAEREVGSEEKAIRIVTESGKVIEGSEDH 173


>sp|P54561|YQJX_BACSU Uncharacterized protein YqjX OS=Bacillus subtilis (strain 168)
           GN=yqjX PE=4 SV=1
          Length = 112

 Score = 31.6 bits (70), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 12/103 (11%)

Query: 87  HLFNQNHKGAMMELGEGLGKLRKMNLRSGPFHEFENEISAALEFIYRTQI------ELAA 140
            +F   HK +++E      KL+K  L      E    + AA+EF     +      E+  
Sbjct: 16  RMFLPEHKQSLLERKRLKQKLQKPILDPDKLEEMNQTLCAAMEFAQDITVSCFQDGEIVC 75

Query: 141 CADDICLAMDQSERSYQLLGDYAAGQQLYHLESDHNQIMYIVF 183
           C   IC   ++ E++  + GD     QLY L+ D  Q++ IV 
Sbjct: 76  CTGKIC-RYEEFEKAVWIKGD---EDQLYKLKLD--QVLDIVL 112


>sp|O14170|POP2_SCHPO WD repeat-containing protein pop2 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=pop2 PE=1 SV=1
          Length = 703

 Score = 31.2 bits (69), Expect = 5.3,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)

Query: 163 AAGQQLYHLESDHNQIMYIVFDPQRSY---GSDDKSIKV 198
           + G+ LYHL     +I  ++++P+R+    GS DKSI+V
Sbjct: 535 STGECLYHLRGHSLRIYSVLYEPERNICISGSMDKSIRV 573


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,038,871
Number of Sequences: 539616
Number of extensions: 3165265
Number of successful extensions: 6411
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6406
Number of HSP's gapped (non-prelim): 16
length of query: 214
length of database: 191,569,459
effective HSP length: 113
effective length of query: 101
effective length of database: 130,592,851
effective search space: 13189877951
effective search space used: 13189877951
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)