BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047861
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 27/264 (10%)
Query: 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139
L G+I L + +L + LS N G +IPK++G L+NL L LS +F+G P +LG
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 140 LSNLQYLDLSQNYLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXX 199
+L +LD L F A+ +
Sbjct: 534 CRSLIWLD------LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK----- 582
Query: 200 XYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLH---------NLVFFDL 250
E H + F +++ L++ N S V+G H +++F D+
Sbjct: 583 ---ECHG--AGNLLEFQGIRSEQLNRLSTRNPC-NITSRVYGGHTSPTFDNNGSMMFLDM 636
Query: 251 SGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS 310
S N G IP +G++ +L L+L N+ + +IP + L L L L SN L G+IP +
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 696
Query: 311 FVRLCKLTSIDLSFVKLSQDLSQV 334
L LT IDLS LS + ++
Sbjct: 697 MSALTMLTEIDLSNNNLSGPIPEM 720
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 121/277 (43%), Gaps = 68/277 (24%)
Query: 93 HLIHLDLSGNDFQG-IQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQN 151
L HL +SGN G + + + + NL +L++S NF+ P+ LG S LQ+LD+S N
Sbjct: 176 ELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 230
Query: 152 YLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXXXYCELHHFPPSS 211
L D S+A
Sbjct: 231 KL---------------------SGDFSRAI----------------------------- 240
Query: 212 SANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGL-GNLTFLR 270
+ + LK L++S NQF + L +L + L+ N+F G+IP L G L
Sbjct: 241 -STCTELKLLNISSNQFVGPIPPLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 271 HLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPT-SFVRLCKLTSIDLSFVKLSQ 329
LDLS N F A+P + + LE L+L SN+ G++P + +++ L +DLSF + S
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 330 DLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366
+L + L SA +L +L L S FSG + L Q
Sbjct: 355 ELPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQ 387
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 116/287 (40%), Gaps = 29/287 (10%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLD 147
L D L HLD+SGN G + + + L+ LN+S F G P L +LQYL
Sbjct: 216 LGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 272
Query: 148 LSQN-YLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXXXYCELHH 206
L++N + ++ F DLS + ++
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGL------DLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 207 F----PPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG 262
F P + LK LDLS N+F+ L + S +L+ DLS N F G I
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPI--- 381
Query: 263 LGNL-----TFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKL 317
L NL L+ L L +N F IP LS ++L L L N L G IP+S L KL
Sbjct: 382 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 441
Query: 318 TSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQL 364
+ L L ++ Q L LE+L+L +G + + L
Sbjct: 442 RDLKLWLNMLEGEIPQELMYVK-----TLETLILDFNDLTGEIPSGL 483
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 209 PSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF 268
PSS + S L+ L L N + Q +V L L+ L N G+IP GL N T
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI---LDFNDLTGEIPSGLSNCTN 488
Query: 269 LRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDL 322
L + LS+N IP W+ +L +L L L +NS G IP L +DL
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/263 (28%), Positives = 106/263 (40%), Gaps = 10/263 (3%)
Query: 76 TGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTP- 134
+G+KL G + ++ L L++S N F G IP LK+L+YL+L+ F G P
Sbjct: 228 SGNKLSGDFSRAISTCTELKLLNISSNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPD 284
Query: 135 YQLGSLSNLQYLDLSQNYLL-QVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXX 193
+ G+ L LDLS N+ V F D
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD---TLLKMRG 341
Query: 194 XXXXXXXYCELHHFPPSSSANFS-SLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSG 252
+ E P S N S SL LDLS N F+ + + L L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQN 400
Query: 253 NQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFV 312
N F GKIP L N + L L LS N + IP L L+ L L L N L+G+IP +
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 313 RLCKLTSIDLSFVKLSQDLSQVL 335
+ L ++ L F L+ ++ L
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGL 483
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 91/234 (38%), Gaps = 32/234 (13%)
Query: 82 GKINLSLVDFK-HLIHLDLSGNDFQGIQIPKYLGSLKN-LRYLNLSRANFAGVTPYQLGS 139
G++ SL + L+ LDLS N+F G +P + KN L+ L L F G P L +
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 140 LSNLQYLDLSQNYLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXX 199
S L L LS NYL LSK D
Sbjct: 414 CSELVSLHLSFNYL--------------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 200 XYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKI 259
Y + +L+ L L FN+ + S + NL + LS N+ G+I
Sbjct: 460 MYVK-------------TLETLIL---DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 260 PIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVR 313
P +G L L L LS+N F+ IP L L +L L +N G IP + +
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 37/173 (21%)
Query: 216 SSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGN--QFQGKIPIGLGNLTFLRHLD 273
+SL +LDLS+N + + S + L F ++S N F GK+ GL L L LD
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLD 154
Query: 274 LSDNEFNSA-IPGWL------------------------SKLNDLEFLSLRSNSLQGKIP 308
LS N + A + GW+ S+ +LEFL + SN+ IP
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 214
Query: 309 TSFVRLCK-LTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHM 360
F+ C L +D+S KLS D S+ + S C L+ L + S QF G +
Sbjct: 215 --FLGDCSALQHLDISGNKLSGDFSRAI---STC--TELKLLNISSNQFVGPI 260
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 35/226 (15%)
Query: 102 NDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLS-NLQYLDLSQNYLLQVESFX 160
N+F G L ++ L+ L+LS F+G P L +LS +L LDLS N +F
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN------NFS 378
Query: 161 XXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXXXYCELHHFP---PSSSANFSS 217
+L Y + + F P + +N S
Sbjct: 379 GPILPNLCQNPKNTLQEL----------------------YLQNNGFTGKIPPTLSNCSE 416
Query: 218 LKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDN 277
L +L LS N + ++ S + L L L N +G+IP L + L L L N
Sbjct: 417 LVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 278 EFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLS 323
+ IP LS +L ++SL +N L G+IP RL L + LS
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 519
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139
L G I SL L L L N +G +IP+ L +K L L L + G P L +
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 140 LSNLQYLDLSQNYL 153
+NL ++ LS N L
Sbjct: 486 CTNLNWISLSNNRL 499
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 130/323 (40%), Gaps = 43/323 (13%)
Query: 15 CIDSEREALLELKQDLKDPSSRLASWNIGDEDCC--AWGGVVCNNFTGHVLQXXXXXXXX 72
C +++ALL++K+DL +P++ L+SW + DCC W GV+C+ T Q
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSW-LPTTDCCNRTWLGVLCDTDT----QTYRVNNLD 56
Query: 73 XXXTGSKLVGKINLSLVDFKHLIHLDLSG-NDFQGIQIPKYLGSLKNLRYLNLSRANFAG 131
I SL + +L L + G N+ G IP + L L YL ++ N +G
Sbjct: 57 LSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSG 115
Query: 132 VTPYQLGSLSNLQYLDLSQNYLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXX 191
P L + L LD S N L S D ++ +
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNAL----SGTLPPSISSLPNLVGITFDGNRISGAI------ 165
Query: 192 XXXXXXXXXYCELHHFPPSSSANFSSL-KALDLSQNQFNNSLFQFGSWVFGLHNLVFFDL 250
P S +FS L ++ +S+N+ + F NL F DL
Sbjct: 166 -----------------PDSYGSFSKLFTSMTISRNRLTGKI----PPTFANLNLAFVDL 204
Query: 251 SGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS 310
S N +G + G+ + + L+ N + G + +L L LR+N + G +P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 311 FVRLCKLTSIDLSFVKLSQDLSQ 333
+L L S+++SF L ++ Q
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 1/108 (0%)
Query: 233 FQFGSWVFGLHNLVFFDLSG-NQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLN 291
+ S + L L F + G N G IP + LT L +L ++ + AIP +LS++
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 292 DLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFS 339
L L N+L G +P S L L I ++S + FS
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 121/277 (43%), Gaps = 68/277 (24%)
Query: 93 HLIHLDLSGNDFQG-IQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQN 151
L HL +SGN G + + + + NL +L++S NF+ P+ LG S LQ+LD+S N
Sbjct: 179 ELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233
Query: 152 YLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXXXYCELHHFPPSS 211
L D S+A
Sbjct: 234 KL---------------------SGDFSRAI----------------------------- 243
Query: 212 SANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGL-GNLTFLR 270
+ + LK L++S NQF + L +L + L+ N+F G+IP L G L
Sbjct: 244 -STCTELKLLNISSNQFVGPIPPLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 271 HLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPT-SFVRLCKLTSIDLSFVKLSQ 329
LDLS N F A+P + + LE L+L SN+ G++P + +++ L +DLSF + S
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 330 DLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366
+L + L SA +L +L L S FSG + L Q
Sbjct: 358 ELPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQ 390
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 9/107 (8%)
Query: 237 SWVFGLH---------NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWL 287
S V+G H +++F D+S N G IP +G++ +L L+L N+ + +IP +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 288 SKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQV 334
L L L L SN L G+IP + L LT IDLS LS + ++
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 116/287 (40%), Gaps = 29/287 (10%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLD 147
L D L HLD+SGN G + + + L+ LN+S F G P L +LQYL
Sbjct: 219 LGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275
Query: 148 LSQN-YLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXXXYCELHH 206
L++N + ++ F DLS + ++
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGL------DLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 207 F----PPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG 262
F P + LK LDLS N+F+ L + S +L+ DLS N F G I
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPI--- 384
Query: 263 LGNL-----TFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKL 317
L NL L+ L L +N F IP LS ++L L L N L G IP+S L KL
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 318 TSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQL 364
+ L L ++ Q L LE+L+L +G + + L
Sbjct: 445 RDLKLWLNMLEGEIPQELMY-----VKTLETLILDFNDLTGEIPSGL 486
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 209 PSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF 268
PSS + S L+ L L N + Q +V L L+ L N G+IP GL N T
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI---LDFNDLTGEIPSGLSNCTN 491
Query: 269 LRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDL 322
L + LS+N IP W+ +L +L L L +NS G IP L +DL
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 91/234 (38%), Gaps = 32/234 (13%)
Query: 82 GKINLSLVDFK-HLIHLDLSGNDFQGIQIPKYLGSLKN-LRYLNLSRANFAGVTPYQLGS 139
G++ SL + L+ LDLS N+F G +P + KN L+ L L F G P L +
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 140 LSNLQYLDLSQNYLLQVESFXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXX 199
S L L LS NYL LSK D
Sbjct: 417 CSELVSLHLSFNYL--------------SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 200 XYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKI 259
Y + +L+ L L FN+ + S + NL + LS N+ G+I
Sbjct: 463 MYVK-------------TLETLIL---DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 260 PIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVR 313
P +G L L L LS+N F+ IP L L +L L +N G IP + +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139
L G+I L + +L + LS N G +IPK++G L+NL L LS +F+G P +LG
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 140 LSNLQYLDLSQN 151
+L +LDL+ N
Sbjct: 537 CRSLIWLDLNTN 548
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 94 LIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYL 153
++ LD+S N G IPK +GS+ L LNL + +G P ++G L L LDLS N L
Sbjct: 634 MMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 201 YCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIP 260
Y L + P + L L+L N + S+ V L L DLS N+ G+IP
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSI---PDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 261 IGLGNLTFLRHLDLSDNEFNSAIP 284
+ LT L +DLS+N + IP
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIP 721
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 77/173 (44%), Gaps = 37/173 (21%)
Query: 216 SSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGN--QFQGKIPIGLGNLTFLRHLD 273
+SL +LDLS+N + + S + L F ++S N F GK+ GL L L LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTS-LGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLD 157
Query: 274 LSDNEFNSA-IPGWL------------------------SKLNDLEFLSLRSNSLQGKIP 308
LS N + A + GW+ S+ +LEFL + SN+ IP
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP 217
Query: 309 TSFVRLCK-LTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHM 360
F+ C L +D+S KLS D S+ + S C L L + S QF G +
Sbjct: 218 --FLGDCSALQHLDISGNKLSGDFSRAI---STCTELKL--LNISSNQFVGPI 263
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139
L G I + +L L+L ND G IP +G L+ L L+LS G P + +
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 140 LSNLQYLDLSQNYL 153
L+ L +DLS N L
Sbjct: 703 LTMLTEIDLSNNNL 716
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 91/226 (40%), Gaps = 35/226 (15%)
Query: 102 NDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLS-NLQYLDLSQNYLLQVESFX 160
N+F G L ++ L+ L+LS F+G P L +LS +L LDLS N +F
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN------NFS 381
Query: 161 XXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXXXYCELHHFP---PSSSANFSS 217
+L Y + + F P + +N S
Sbjct: 382 GPILPNLCQNPKNTLQEL----------------------YLQNNGFTGKIPPTLSNCSE 419
Query: 218 LKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDN 277
L +L LS N + ++ S + L L L N +G+IP L + L L L N
Sbjct: 420 LVSLHLSFNYLSGTI---PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 278 EFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLS 323
+ IP LS +L ++SL +N L G+IP RL L + LS
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139
L G I SL L L L N +G +IP+ L +K L L L + G P L +
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 140 LSNLQYLDLSQNYL 153
+NL ++ LS N L
Sbjct: 489 CTNLNWISLSNNRL 502
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 242 LHNLVFFDLSGNQFQGKIPIGL-GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRS 300
L NL + L+GNQ Q +P G+ LT L+ L L +N+ S G KL +L +L+L
Sbjct: 84 LTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 301 NSLQGKIPTSFVRLCKLTSIDLSFVKL 327
N LQ F +L LT +DLS+ +L
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQL 169
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 203 ELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVF-GLHNLVFFDLSGNQFQGKIPI 261
+L P ++LK L L +NQ + VF L NL + +L+ NQ Q +P
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVENQLQS----LPDGVFDKLTNLTYLNLAHNQLQS-LPK 150
Query: 262 GL-GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSI 320
G+ LT L LDLS N+ S G KL L+ L L N L+ F RL L I
Sbjct: 151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 203 ELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVF-GLHNLVFFDLSGNQFQGKIPI 261
+L P ++L L+L+ NQ + VF L NL DLS NQ Q +P
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQS----LPKGVFDKLTNLTELDLSYNQLQS-LPE 174
Query: 262 GL-GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSN 301
G+ LT L+ L L N+ S G +L L+++ L N
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 97 LDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQV 156
L ++GN FQ +P L+NL +L+LS+ ++P SLS+LQ L++S N +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Query: 157 ESF 159
++F
Sbjct: 215 DTF 217
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 215 FSSLKALDLSQNQFNNSLFQFGSWVFG-LHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
SSL+ L ++ N F + F +F L NL F DLS Q + P +L+ L+ L+
Sbjct: 149 LSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 274 LSDNEFNSAIPGWLSKLNDLEFL 296
+S N F S LN L+ L
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVL 228
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 97 LDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQV 156
L ++GN FQ +P L+NL +L+LS+ ++P SLS+LQ L++S N +
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Query: 157 ESF 159
++F
Sbjct: 534 DTF 536
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 8/116 (6%)
Query: 216 SSLKALDLSQNQFNNSLFQFGSWVFG-LHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDL 274
SSL+ L ++ N F + F +F L NL F DLS Q + P +L+ L+ L++
Sbjct: 469 SSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525
Query: 275 SDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330
S N F S LN L+ L N I TS + + L+F+ L+Q+
Sbjct: 526 SHNNFFSLDTFPYKCLNSLQVLDYSLN----HIMTSKKQELQHFPSSLAFLNLTQN 577
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 97 LDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQV 156
L ++GN FQ +P L+NL +L+LS+ ++P SLS+LQ L++S N +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 157 ESF 159
++F
Sbjct: 510 DTF 512
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 30/238 (12%)
Query: 101 GNDFQGIQIPKYLGSLKNLRYLNLSR--ANFAGVTPYQLGSLSNLQYLDLSQNYLLQVES 158
GN F + +P +L +L+LSR +F G ++L+YLDLS N ++ + S
Sbjct: 338 GNAFSEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Query: 159 FXXXXXXXXXXXXXXXQADLSKATDWXXXXXXXXXXXXXXXXYCELHHFPPSSSAN---- 214
++L + +++ Y ++ H + N
Sbjct: 391 --NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI------YLDISHTHTRVAFNGIFN 442
Query: 215 -FSSLKALDLSQNQFNNSLFQFGSWVFG-LHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
SSL+ L ++ N F + F +F L NL F DLS Q + P +L+ L+ L
Sbjct: 443 GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330
++S N F S LN L+ L N I TS + + L+F+ L+Q+
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLN----HIMTSKKQELQHFPSSLAFLNLTQN 553
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 242 LHNLVFFDLSGNQFQGKIPIGL-GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRS 300
L NL + L+GNQ Q +P G+ LT L+ L L +N+ S G KL +L +L L
Sbjct: 84 LTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYH 142
Query: 301 NSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSC 354
N LQ F +L LT +DL +L V D + +L L+S
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 203 ELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFG-LHNLVFFDLSGNQFQGKIPI 261
+L P ++LK L L +NQ L VF L NL + L NQ Q +P
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVENQ----LQSLPDGVFDKLTNLTYLYLYHNQLQS-LPK 150
Query: 262 GL-GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSI 320
G+ LT L LDL +N+ S G KL L+ LSL N L+ F RL LT I
Sbjct: 151 GVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHI 210
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 228 FNNSLFQFGSWVFG-LHNLVFFDLSGNQFQGKIPIGL-GNLTFLRHLDLSDNEFNSAIPG 285
++N L VF L NL DL NQ Q +P G+ LT L+ L L+DN+ S G
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDG 199
Query: 286 WLSKLNDLEFLSLRSN 301
+L L + L +N
Sbjct: 200 VFDRLTSLTHIWLLNN 215
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 97 LDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQV 156
L ++GN FQ +P L+NL +L+LS+ ++P SLS+LQ L+++ N L V
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 211 SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLR 270
S +NFS L+ LDLS+ + + +W GLH+L L+GN Q P LT L
Sbjct: 51 SFSNFSELQWLDLSRCEIET--IEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107
Query: 271 HLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQG-KIPTSFVRLCKLTSIDLSF 324
+L + + S + +L L+ L++ N + K+P F L L +DLS+
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 215 FSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQ-GKIPIGLGNLTFLRHLD 273
F SL+ L + N+ F GL +L ++GN F+ + N T L LD
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKL 327
LS + G L+ L+ L++ N+L + + +L L+++D SF ++
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 211 SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLR 270
S +NFS L+ LDLS+ + + +W GLH+L L+GN Q P LT L
Sbjct: 46 SFSNFSELQWLDLSRCEIET--IEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 102
Query: 271 HLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQG-KIPTSFVRLCKLTSIDLSF 324
+L + + S + +L L+ L++ N + K+P F L L +DLS+
Sbjct: 103 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 157
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 215 FSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQ-GKIPIGLGNLTFLRHLD 273
F SL+ L + N+ F GL +L ++GN F+ + N T L LD
Sbjct: 415 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 474
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKL 327
LS + G L+ L+ L++ N+L + + +L L+++D SF ++
Sbjct: 475 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI 261
CEL L LDLS NQ SL G L L D+S N+ +P+
Sbjct: 65 CELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPL 117
Query: 262 G-LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
G L L L+ L L NE + PG L+ LE LSL +N L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ +L++
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTE 162
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI 261
CEL L LDLS NQ SL G L L D+S N+ +P+
Sbjct: 65 CELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPL 117
Query: 262 G-LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
G L L L+ L L NE + PG L+ LE LSL +N L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ +L++
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTE 162
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 209 PSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG-LGNLT 267
PS S+LK L LS N+F N L Q + F +L + GN + ++ G L NL
Sbjct: 294 PSGLVGLSTLKKLVLSANKFEN-LCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLE 350
Query: 268 FLRHLDLS--DNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFV 325
LR LDLS D E + L L+ L+ L+L N +F +L +DL+F
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 326 KL 327
+L
Sbjct: 411 RL 412
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI 261
CEL L LDLS NQ SL G L L D+S N+ +P+
Sbjct: 66 CELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPL 118
Query: 262 G-LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
G L L L+ L L NE + PG L+ LE LSL +N+L
Sbjct: 119 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 83 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ L++
Sbjct: 142 PGLLTPTPKLEKLSLANNNLTE 163
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
A+ ++L LDL+ NQ +N + + GL L L NQ P L LT L +L
Sbjct: 236 ASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP-TSFVRLCKL 317
+L++N+ P +S L +L +L+L N++ P +S +L +L
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 18/144 (12%)
Query: 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
N ++L L+LS N ++ S + GL +L + S NQ P L NLT L LD
Sbjct: 127 NLTNLNRLELSSNTISDI-----SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLD 179
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
+S N+ + L+KL +LE L +N + P L LT++D +LS + +Q
Sbjct: 180 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLD----ELSLNGNQ 228
Query: 334 VLDIFSACGAYALESLVLRSCQFS 357
+ DI + L L L + Q S
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQIS 252
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI 261
CEL L LDLS NQ SL G L L D+S N+ +P+
Sbjct: 65 CELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPL 117
Query: 262 G-LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
G L L L+ L L NE + PG L+ LE LSL +N+L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ L++
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTE 162
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
A+ ++L LDL+ NQ +N + + GL L L NQ P L LT L +L
Sbjct: 240 ASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 292
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP-TSFVRLCKL 317
+L++N+ P +S L +L +L+L N++ P +S +L +L
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 336
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
N ++L L+LS N ++ S + L L F GNQ P L NLT L LD
Sbjct: 132 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF----GNQVTDLKP--LANLTTLERLD 183
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
+S N+ + L+KL +LE L +N + P L LT++D +LS + +Q
Sbjct: 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLD----ELSLNGNQ 232
Query: 334 VLDIFSACGAYALESLVLRSCQFS 357
+ DI + L L L + Q S
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQIS 256
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
A+ ++L LDL+ NQ +N + + GL L L NQ P L LT L +L
Sbjct: 236 ASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP-TSFVRLCKL 317
+L++N+ P +S L +L +L+L N++ P +S +L +L
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
N ++L L+LS N ++ S + GL +L S NQ P L NLT L LD
Sbjct: 127 NLTNLNRLELSSNTISDI-----SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
+S N+ + L+KL +LE L +N + P L LT++D +LS + +Q
Sbjct: 180 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLD----ELSLNGNQ 228
Query: 334 VLDIFSACGAYALESLVLRSCQFS 357
+ DI + L L L + Q S
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQIS 252
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI 261
CEL L LDLS NQ SL G L L D+S N+ +P+
Sbjct: 65 CELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPL 117
Query: 262 G-LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
G L L L+ L L NE + PG L+ LE LSL +N L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ +L++
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTE 162
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
A+ ++L LDL+ NQ +N + + GL L L NQ P L LT L +L
Sbjct: 239 ASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 291
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP-TSFVRLCKL 317
+L++N+ P +S L +L +L+L N++ P +S +L +L
Sbjct: 292 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 335
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 19/144 (13%)
Query: 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
N ++L L+LS N ++ S + L L F GNQ P L NLT L LD
Sbjct: 131 NLTNLNRLELSSNTISD--ISALSGLTSLQQLSF----GNQVTDLKP--LANLTTLERLD 182
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
+S N+ + L+KL +LE L +N + P L LT++D +LS + +Q
Sbjct: 183 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLD----ELSLNGNQ 231
Query: 334 VLDIFSACGAYALESLVLRSCQFS 357
+ DI + L L L + Q S
Sbjct: 232 LKDIGTLASLTNLTDLDLANNQIS 255
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLD 147
L L +L+L+ N + I + +LKNL YL L N + ++P + SL+ LQ L
Sbjct: 282 LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 336
Query: 148 LSQNYLLQVESF 159
+ N + V S
Sbjct: 337 FANNKVSDVSSL 348
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI 261
CEL L LDLS NQ SL G L L D+S N+ +P+
Sbjct: 65 CELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPL 117
Query: 262 G-LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
G L L L+ L L NE + PG L+ LE LSL +N L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ +L++
Sbjct: 141 PGLLTPTPKLEKLSLANNQLTE 162
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
A+ ++L LDL+ NQ +N + + GL L L NQ P L LT L +L
Sbjct: 236 ASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 288
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP-TSFVRLCKL 317
+L++N+ P +S L +L +L+L N++ P +S +L +L
Sbjct: 289 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
N ++L L+LS N ++ S + GL +L S NQ P L NLT L LD
Sbjct: 127 NLTNLNRLELSSNTISDI-----SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLD 179
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
+S N+ + L+KL +LE L +N + P L LT++D +LS + +Q
Sbjct: 180 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLD----ELSLNGNQ 228
Query: 334 VLDIFSACGAYALESLVLRSCQFS 357
+ DI + L L L + Q S
Sbjct: 229 LKDIGTLASLTNLTDLDLANNQIS 252
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLD 147
L L +L+L+ N + I + +LKNL YL L N + ++P + SL+ LQ L
Sbjct: 279 LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 333
Query: 148 LSQNYLLQVESF 159
S N + V S
Sbjct: 334 FSNNKVSDVSSL 345
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
A+ ++L LDL+ NQ +N + + GL L L NQ P L LT L +L
Sbjct: 235 ASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP-TSFVRLCKL 317
+L++N+ P +S L +L +L+L N++ P +S +L +L
Sbjct: 288 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
N ++L L+LS N S S + L L F GNQ P L NLT L LD
Sbjct: 127 NLTNLNRLELSSNTI--SDISALSGLTSLQQLNF----GNQVTDLKP--LANLTTLERLD 178
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
+S N+ + L+KL +LE L +N + P L LT++D +LS + +Q
Sbjct: 179 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLD----ELSLNGNQ 227
Query: 334 VLDIFSACGAYALESLVLRSCQFS 357
+ DI + L L L + Q S
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQIS 251
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI 261
CEL L LDLS NQ SL G L L D+S N+ +P+
Sbjct: 65 CELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPL 117
Query: 262 G-LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
G L L L+ L L NE + PG L+ LE LSL +N L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ L++
Sbjct: 141 PGLLTPTPKLEKLSLANNDLTE 162
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272
A+ ++L LDL+ NQ +N + + GL L L NQ P L LT L +L
Sbjct: 235 ASLTNLTDLDLANNQISNL-----APLSGLTKLTELKLGANQISNISP--LAGLTALTNL 287
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP-TSFVRLCKL 317
+L++N+ P +S L +L +L+L N++ P +S +L +L
Sbjct: 288 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 65/144 (45%), Gaps = 19/144 (13%)
Query: 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273
N ++L L+LS N S S + L L F GNQ P L NLT L LD
Sbjct: 127 NLTNLNRLELSSNTI--SDISALSGLTSLQQLNF----GNQVTDLKP--LANLTTLERLD 178
Query: 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
+S N+ + L+KL +LE L +N + P L LT++D +LS + +Q
Sbjct: 179 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-----LGILTNLD----ELSLNGNQ 227
Query: 334 VLDIFSACGAYALESLVLRSCQFS 357
+ DI + L L L + Q S
Sbjct: 228 LKDIGTLASLTNLTDLDLANNQIS 251
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLD 147
L L +L+L+ N + I + +LKNL YL L N + ++P + SL+ LQ L
Sbjct: 278 LAGLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 332
Query: 148 LSQNYLLQVESF 159
S N + V S
Sbjct: 333 FSNNKVSDVSSL 344
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 85 NLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANF 129
N+S L HLDLS NDF + + K G+L L +L LS A F
Sbjct: 114 NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 215 FSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDL 274
S L+ L LS N+ + F ++F +L + D+S N+ Q I + LRHLDL
Sbjct: 75 LSELRVLRLSHNRIRS--LDFHVFLFN-QDLEYLDVSHNRLQN---ISCCPMASLRHLDL 128
Query: 275 SDNEFN 280
S N+F+
Sbjct: 129 SFNDFD 134
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 208 PPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQG--KIPIGLGN 265
PPS S S L+ +QN F +S+FQ S + L L+ L N + K+ + N
Sbjct: 349 PPSPS----SFTFLNFTQNVFTDSVFQGCSTLKRLQTLI---LQRNGLKNFFKVALMTKN 401
Query: 266 LTFLRHLDLSDNEFNS-AIPGWLSKLNDLEFLSLRSNSLQGKI 307
++ L LD+S N NS A + + L+L SN L G +
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQ--Y 145
L + + L+LSGN + + + L++++ L+L+ VTP L LSNLQ Y
Sbjct: 81 LKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135
Query: 146 LDLSQ 150
LDL+Q
Sbjct: 136 LDLNQ 140
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQ--Y 145
L + + L+LSGN + + + L++++ L+L+ VTP L LSNLQ Y
Sbjct: 87 LKNLTKITELELSGNPLKNV---SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 141
Query: 146 LDLSQ 150
LDL+Q
Sbjct: 142 LDLNQ 146
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG-LGNLTFLRH 271
L LDLS NQ SL G L L D+S N+ +P+G L L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPLGALRGLGELQE 128
Query: 272 LDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
L L NE + PG L+ LE LSL +N+L
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ L++
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTE 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG-LGNLTFLRH 271
L LDLS NQ SL G L L D+S N+ +P+G L L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPLGALRGLGELQE 128
Query: 272 LDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
L L NE + PG L+ LE LSL +N+L
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ L++
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTE 162
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 213 ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG-LGNLTFLRH 271
L LDLS NQ SL G L L D+S N+ +P+G L L L+
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQ---TLPALTVLDVSFNRLTS-LPLGALRGLGELQE 128
Query: 272 LDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
L L NE + PG L+ LE LSL +N+L
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307
DLS NQ Q +P+ L L LD+S N S G L L +L+ L L+ N L+
Sbjct: 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 308 PTSFVRLCKLTSIDLSFVKLSQ 329
P KL + L+ L++
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTE 162
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 216 SSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLS 275
+++K+LDLS N+ L L+ N +G LG+L HLDLS
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDLS 108
Query: 276 DNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS-FVRLCKLTSIDLSFVKLSQDLSQV 334
DN +S W L+ L++L+L N Q TS F L L ++ + V+ ++ ++
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 168
Query: 335 LDIFSACGAYALESLVLRSCQFSGHMTNQLGQFK 368
G +L L +++ + + L +
Sbjct: 169 ----DFAGLTSLNELEIKALSLRNYQSQSLKSIR 198
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 208 PPSSSANFSSLKALDLSQNQFNNSLFQ----FGSWVFGLHNLVFFD--LSGNQFQGKIPI 261
P S S + SL+ LDLS+N + G+W L LV L Q G+I +
Sbjct: 352 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILL 410
Query: 262 GLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304
L NLT LD+S N F+ +P + FL+L S ++
Sbjct: 411 TLKNLT---SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 449
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 216 SSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLS 275
+++K+LDLS N+ L L+ N +G LG+L HLDLS
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL---EHLDLS 82
Query: 276 DNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS-FVRLCKLTSIDLSFVKLSQDLSQV 334
DN +S W L+ L++L+L N Q TS F L L ++ + V+ ++ ++
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142
Query: 335 LDIFSACGAYALESLVLRSCQFSGHMTNQLGQFK 368
G +L L +++ + + L +
Sbjct: 143 ----DFAGLTSLNELEIKALSLRNYQSQSLKSIR 172
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 208 PPSSSANFSSLKALDLSQNQFNNSLFQ----FGSWVFGLHNLVFFD--LSGNQFQGKIPI 261
P S S + SL+ LDLS+N + G+W L LV L Q G+I +
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP-SLQTLVLSQNHLRSMQKTGEILL 384
Query: 262 GLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304
L NLT LD+S N F+ +P + FL+L S ++
Sbjct: 385 TLKNLT---SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 229 NNSLFQFGSWVFG-LHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWL 287
+N L VF L NL L NQ + P +LT L +L L NE S G
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 288 SKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDL 322
KL L+ L L +N L+ +F +L +L ++ L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 4/138 (2%)
Query: 204 LHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGL 263
L F P L AL L+ Q N L + W ++ L+ NQ
Sbjct: 183 LKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTF 242
Query: 264 GNL--TFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLT--S 319
L T L LDLS N + G S L L +LSL N++Q P SF L L S
Sbjct: 243 SGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLS 302
Query: 320 IDLSFVKLSQDLSQVLDI 337
+ +F K S L+ +I
Sbjct: 303 LKRAFTKQSVSLASHPNI 320
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 89 VDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDL 148
+ + +L LDLS N+ + + L +LRYL+L N ++P LSNL+YL L
Sbjct: 245 LKWTNLTQLDLSYNNLHDVGNGSF-SYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Query: 149 SQNYLLQ 155
+ + Q
Sbjct: 304 KRAFTKQ 310
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 110 PKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQV 156
P L+NL L+LS N A + L L NL+ LD N L ++
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL 519
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 220 ALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEF 279
ALDLS N +F + +F L L+GN ++P + NL+ LR LDLS N
Sbjct: 228 ALDLS----NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282
Query: 280 NSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFS 339
S +P L L++ N + +P F LC L + + L + ++L S
Sbjct: 283 TS-LPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS 340
Query: 340 ACG 342
G
Sbjct: 341 VTG 343
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 84 INLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNL 143
I+ ++ + L L L+GN ++P + +L NLR L+LS + P +LGS L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSL--TELPAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQL 295
Query: 144 QYL 146
+Y
Sbjct: 296 KYF 298
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPK--YLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQY 145
L + L HL+L GN FQ I K L + +L L LS N + L N+ +
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNH 503
Query: 146 LDLSQNYL 153
LDLS N L
Sbjct: 504 LDLSHNSL 511
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 97 LDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQV 156
LDLS N+ ++ L NL L LS + ++ + NL+YLDLS N+L +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 157 ESF 159
+ F
Sbjct: 104 DEF 106
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 201 YCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIP 260
+C L P + + L+ L+LS N + GS + L L L G Q P
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTI---EGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 261 IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303
L +LR L++S N+ + + +LE L L SN L
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 209 PSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF 268
P + N +L+ L L N+ L G + GL NL D+S N+ + +L
Sbjct: 73 PGAFNNLFNLRTLGLRSNRL--KLIPLGVFT-GLSNLTKLDISENKIVILLDYMFQDLYN 129
Query: 269 LRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS 310
L+ L++ DN+ S LN LE L+L +L IPT
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTE 170
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 91 FKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRA--NFAGVTPYQLGSL--SNLQYL 146
K L HL++ ND GI+ + G L NL+YL+LS + + +T SL S L L
Sbjct: 338 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 396
Query: 147 DLSQNYLLQVES 158
+L++N + ++ES
Sbjct: 397 NLTKNKISKIES 408
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 91 FKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRA--NFAGVTPYQLGSL--SNLQYL 146
K L HL++ ND GI+ + G L NL+YL+LS + + +T SL S L L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 147 DLSQNYLLQVES 158
+L++N + ++ES
Sbjct: 387 NLTKNKISKIES 398
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 91 FKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRA--NFAGVTPYQLGSL--SNLQYL 146
K L HL++ ND GI+ + G L NL+YL+LS + + +T SL S L L
Sbjct: 333 LKCLEHLNMEDNDIPGIKSNMFTG-LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 391
Query: 147 DLSQNYLLQVES 158
+L++N + ++ES
Sbjct: 392 NLTKNKISKIES 403
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 216 SSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGN-LTFLRHLDL 274
++ + L+L +NQ + + S+ L +L LS N + I IG N L L L+L
Sbjct: 64 TNTRLLNLHENQI--QIIKVNSFKH-LRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119
Query: 275 SDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVK 326
DN + G L+ L+ L LR+N ++ +F R+ L +DL +K
Sbjct: 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 116 LKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYL 153
L NLRYLNL+ N + L L L LDLS N+L
Sbjct: 184 LSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHL 219
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLD 147
L+++ L+ +DLS N+ + I ++ ++ L L +S + Y + L+ LD
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVALNLYG-QPIPTLKVLD 301
Query: 148 LSQNYLLQVE 157
LS N+LL VE
Sbjct: 302 LSHNHLLHVE 311
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 242 LHNLVFFDLSGNQFQGKIPIGLGN-LTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRS 300
LH+L L N + +I +G N L L L+L DN G L+ L L LR+
Sbjct: 98 LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 301 NSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333
N ++ +F R+ L +DL +K + +S+
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLD 147
L+++ L+ +DLS N+ + I ++ ++ L L +S + Y + L+ LD
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNNRLVALNLYG-QPIPTLKVLD 307
Query: 148 LSQNYLLQVE 157
LS N+LL VE
Sbjct: 308 LSHNHLLHVE 317
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 94 LIHLDLSGNDFQGIQIPK--YLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQN 151
L HL+L GN FQ I K L ++ +L L LS + SL + ++DLS N
Sbjct: 448 LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHN 507
Query: 152 YL 153
L
Sbjct: 508 SL 509
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 247 FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAI---PGWLSKLNDLEFLSLRSNSL 303
F D S +P+ LRHL+L N F L + LE L L S L
Sbjct: 433 FLDTSNQHLLAGLPV-------LRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGL 485
Query: 304 QGKIPTSFVRLCKLTSIDLSFVKLSQD 330
+F L K++ +DLS L+ D
Sbjct: 486 LSIDQQAFHSLGKMSHVDLSHNSLTCD 512
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 203 ELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG 262
EL P S N L + S F+ L +L LS N + KI +G
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRTDTFKH------LRHLEILQLSKNLVR-KIEVG 77
Query: 263 LGN-LTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSID 321
N L L L+L DN + L+ L L LR+N ++ +F R+ L +D
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 322 LSFVKLSQDLSQV 334
L +K + +S+
Sbjct: 138 LGELKRLEYISEA 150
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 203 ELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG 262
EL P S N L + S F+ L +L LS N + KI +G
Sbjct: 25 ELAEVPASIPVNTRYLNLQENSIQVIRTDTFKH------LRHLEILQLSKNLVR-KIEVG 77
Query: 263 LGN-LTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSID 321
N L L L+L DN + L+ L L LR+N ++ +F R+ L +D
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 322 LSFVKLSQDLSQV 334
L +K + +S+
Sbjct: 138 LGELKRLEYISEA 150
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%)
Query: 256 QGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLC 315
QG+ + G +LDL N S G +L L L L N LQ F +L
Sbjct: 17 QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 316 KLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRS 353
LT ++LS +L + V D + AL + L+S
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS 114
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 259 IPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLT 318
+P G+ + L+L N+ S G KL L LSL N +Q F +L KLT
Sbjct: 22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79
Query: 319 SIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRS 353
+ L KL + V D + AL++ L+S
Sbjct: 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 241 GLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAI--PGWLSKLNDLEFLSL 298
GL +L+ L NQF L L L L+ + A+ + L LE L L
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 299 RSNSLQGKIPTS-FVRLCKLTSIDLSFVKL 327
R N+++ P S F+ + + +DL+F K+
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 209 PSSSANFSSLKALDLSQN---QFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGN 265
P++ S ++ L L +N + +N +F GLH L +L NQ +P +
Sbjct: 71 PNAFEGASHIQELQLGENKIKEISNKMF------LGLHQLKTLNLYDNQISCVMPGSFEH 124
Query: 266 LTFLRHLDLSDNEFN 280
L L L+L+ N FN
Sbjct: 125 LNSLTSLNLASNPFN 139
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 241 GLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAI--PGWLSKLNDLEFLSL 298
GL +L+ L NQF L L L L+ + A+ + L LE L L
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 299 RSNSLQGKIPTS-FVRLCKLTSIDLSFVKL 327
R N+++ P S F+ + + +DL+F K+
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 215 FSSLKALDLSQNQ---FNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRH 271
S L+ L +S N+ + S+F+F L + DLS N+ + I L+H
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFN------QELEYLDLSHNKL---VKISCHPTVNLKH 94
Query: 272 LDLSDNEFNS-AIPGWLSKLNDLEFLSLRSNSLQGK--IPTSFVRLCKL 317
LDLS N F++ I ++ L+FL L + L+ +P + + + K+
Sbjct: 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143
>pdb|2XLJ|A Chain A, Crystal Structure Of The Csy4-Crrna Complex, Hexagonal
Form
pdb|2XLK|A Chain A, Crystal Structure Of The Csy4-Crrna Complex, Orthorhombic
Form
pdb|2XLK|B Chain B, Crystal Structure Of The Csy4-Crrna Complex, Orthorhombic
Form
Length = 191
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNS 302
DLS+ E IP +++ DL F++LRS S
Sbjct: 125 DLSEEEARKRIPDTVARTLDLPFVTLRSQS 154
>pdb|2XLI|A Chain A, Crystal Structure Of The Csy4-Crrna Complex, Monoclinic
Form
Length = 191
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNS 302
DLS+ E IP +++ DL F++LRS S
Sbjct: 125 DLSEEEARKRIPDTVARTLDLPFVTLRSQS 154
>pdb|4AL7|A Chain A, Crystal Structure Of The Csy4-Minimal Crrna Complex
Length = 191
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNS 302
DLS+ E IP +++ DL F++LRS S
Sbjct: 125 DLSEEEARKRIPDTVARALDLPFVTLRSQS 154
>pdb|4AL5|A Chain A, Crystal Structure Of The Csy4-Crrna Product Complex
Length = 191
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNS 302
DLS+ E IP +++ DL F++LRS S
Sbjct: 125 DLSEEEARKRIPDTVARALDLPFVTLRSQS 154
>pdb|4AFG|A Chain A, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|B Chain B, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|C Chain C, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|D Chain D, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFG|E Chain E, Capitella Teleta Achbp In Complex With Varenicline
pdb|4AFH|A Chain A, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|B Chain B, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|C Chain C, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|D Chain D, Capitella Teleta Achbp In Complex With Lobeline
pdb|4AFH|E Chain E, Capitella Teleta Achbp In Complex With Lobeline
pdb|4B5D|A Chain A, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|B Chain B, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|C Chain C, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|D Chain D, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
pdb|4B5D|E Chain E, Capitella Teleta Achbp In Complex With Psychonicline
(3-((2(S)-
Azetidinyl)methoxy)-5-((1s,
2r)-2-(2-Hydroxyethyl)cyclopropyl) Pyridine)
Length = 230
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 218 LKALDLSQNQFNNSLFQFGSWVFGLHNL 245
LK L +SQ+ ++ FQFGSWV+ + +
Sbjct: 133 LKVLCVSQDDVDSCHFQFGSWVYSVDEV 160
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 93 HLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQ---LGSLSNLQYLD 147
+L HL+LSGN + + + L L+NL+ L+L + Y+ L L YLD
Sbjct: 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 217 SLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSD 276
++K+LDLS N+ + S + NL L+ N +L L HLDLS
Sbjct: 53 AVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109
Query: 277 NEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS-FVRLCKL 317
N ++ W L+ L FL+L N + TS F L KL
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 83 KINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVT 133
K +L+ K+L ++D+S N F +P+ + ++YLNLS VT
Sbjct: 378 KTGETLLTLKNLTNIDISKNSFHS--MPETCQWPEKMKYLNLSSTRIHSVT 426
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 217 SLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSD 276
++K+LDLS N+ + S + NL L+ N +L L HLDLS
Sbjct: 27 AVKSLDLSNNRIT---YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 83
Query: 277 NEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS-FVRLCKL 317
N ++ W L+ L FL+L N + TS F L KL
Sbjct: 84 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 125
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 250 LSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPT 309
L GNQF +P L N L +DLS+N ++ S + L L L N L+ P
Sbjct: 38 LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 310 SF-----VRLCKLTSIDLSFV 325
+F +RL L D+S V
Sbjct: 97 TFDGLKSLRLLSLHGNDISVV 117
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 29/71 (40%)
Query: 250 LSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPT 309
L NQ P LT L LDL +N+ G KL L LSL N L+
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG 96
Query: 310 SFVRLCKLTSI 320
+F L LT I
Sbjct: 97 AFDNLKSLTHI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 28/68 (41%)
Query: 253 NQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFV 312
NQ P LT L LDL +N+ G KL L LSL N L+ +F
Sbjct: 48 NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 107
Query: 313 RLCKLTSI 320
L LT I
Sbjct: 108 NLKSLTHI 115
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 78 SKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQL 137
+++ G +++ +L HL+LSGN + I + L L+ L+ L+L + Y+
Sbjct: 81 NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140
Query: 138 GS---LSNLQYLD 147
L L YLD
Sbjct: 141 SVFKLLPQLTYLD 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,394,606
Number of Sequences: 62578
Number of extensions: 342180
Number of successful extensions: 1016
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 361
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)