Query 047861
Match_columns 368
No_of_seqs 298 out of 4135
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.3E-40 7.2E-45 338.0 27.2 328 17-366 28-378 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.8E-32 3.9E-37 281.0 22.0 277 78-366 150-426 (968)
3 KOG4194 Membrane glycoprotein 99.9 4.5E-29 9.7E-34 224.2 2.9 289 59-367 124-439 (873)
4 KOG4194 Membrane glycoprotein 99.9 1.6E-28 3.4E-33 220.7 6.4 286 61-362 79-383 (873)
5 KOG0444 Cytoskeletal regulator 99.9 8.1E-28 1.8E-32 218.0 -3.7 250 60-328 7-258 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 4.6E-26 1E-30 206.7 -4.0 258 90-365 76-359 (1255)
7 PRK15387 E3 ubiquitin-protein 99.8 6E-20 1.3E-24 177.8 16.7 247 63-365 204-466 (788)
8 PLN03210 Resistant to P. syrin 99.8 5.3E-19 1.2E-23 182.8 23.2 112 243-364 778-889 (1153)
9 PLN03210 Resistant to P. syrin 99.8 2.8E-19 6.1E-24 184.9 21.1 264 60-355 611-904 (1153)
10 KOG0472 Leucine-rich repeat pr 99.8 9E-24 2E-28 182.4 -10.0 237 84-367 60-297 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 2.4E-22 5.2E-27 173.7 -1.7 263 83-364 242-546 (565)
12 cd00116 LRR_RI Leucine-rich re 99.8 2E-21 4.3E-26 175.0 1.5 273 83-356 14-319 (319)
13 PRK15370 E3 ubiquitin-protein 99.8 3.3E-18 7.1E-23 166.6 18.9 228 92-362 178-405 (754)
14 KOG0618 Serine/threonine phosp 99.8 3E-21 6.5E-26 182.5 -3.0 246 92-355 241-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.8 1.8E-18 3.8E-23 168.5 15.6 250 61-357 179-428 (754)
16 cd00116 LRR_RI Leucine-rich re 99.8 1.5E-19 3.3E-24 162.7 4.8 258 96-359 2-293 (319)
17 PRK15387 E3 ubiquitin-protein 99.8 1.3E-17 2.8E-22 161.7 16.7 233 60-338 222-468 (788)
18 KOG0618 Serine/threonine phosp 99.7 7.4E-20 1.6E-24 173.2 -3.4 254 83-354 255-510 (1081)
19 KOG4237 Extracellular matrix p 99.7 2.6E-19 5.6E-24 154.7 -4.9 130 61-202 68-198 (498)
20 KOG0617 Ras suppressor protein 99.7 4.7E-19 1E-23 136.5 -3.6 164 190-367 31-195 (264)
21 KOG4237 Extracellular matrix p 99.7 3.4E-18 7.4E-23 147.9 -1.9 256 92-356 67-358 (498)
22 KOG0617 Ras suppressor protein 99.5 6.2E-17 1.3E-21 124.9 -5.3 69 241-312 125-193 (264)
23 PLN03150 hypothetical protein; 99.5 6.1E-14 1.3E-18 136.1 13.5 152 13-177 367-526 (623)
24 KOG1909 Ran GTPase-activating 99.5 9.6E-15 2.1E-19 124.9 0.2 189 139-327 90-310 (382)
25 KOG1909 Ran GTPase-activating 99.4 7.8E-14 1.7E-18 119.4 2.4 194 162-356 88-310 (382)
26 KOG3207 Beta-tubulin folding c 99.4 7.6E-14 1.6E-18 122.7 1.5 214 88-304 117-339 (505)
27 KOG3207 Beta-tubulin folding c 99.3 6.7E-13 1.5E-17 116.9 1.4 212 114-330 118-341 (505)
28 PLN03150 hypothetical protein; 99.2 4.1E-11 8.8E-16 116.6 9.5 114 244-361 419-532 (623)
29 KOG1259 Nischarin, modulator o 99.2 5.6E-12 1.2E-16 106.2 0.1 131 214-358 282-413 (490)
30 COG4886 Leucine-rich repeat (L 99.1 1.1E-10 2.5E-15 108.2 8.2 198 121-333 97-295 (394)
31 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.5E-16 102.8 2.2 207 81-304 203-412 (490)
32 PF14580 LRR_9: Leucine-rich r 99.1 5.3E-11 1.1E-15 95.6 4.1 84 91-180 18-102 (175)
33 KOG0532 Leucine-rich repeat (L 99.1 3.1E-12 6.8E-17 116.2 -4.1 198 140-355 74-271 (722)
34 PF14580 LRR_9: Leucine-rich r 99.1 7.2E-11 1.6E-15 94.8 4.0 127 61-200 20-148 (175)
35 COG4886 Leucine-rich repeat (L 99.1 3.2E-10 7E-15 105.2 8.9 199 96-310 97-296 (394)
36 KOG0532 Leucine-rich repeat (L 99.0 6E-12 1.3E-16 114.4 -5.7 200 146-365 55-254 (722)
37 KOG2120 SCF ubiquitin ligase, 98.9 1E-11 2.2E-16 104.5 -7.5 181 93-301 186-373 (419)
38 KOG4658 Apoptotic ATPase [Sign 98.9 7.1E-10 1.5E-14 110.6 4.1 131 61-200 546-676 (889)
39 KOG2120 SCF ubiquitin ligase, 98.9 2.2E-11 4.7E-16 102.5 -6.0 184 142-329 186-377 (419)
40 KOG0531 Protein phosphatase 1, 98.9 1.5E-10 3.4E-15 107.6 -1.2 196 90-304 70-268 (414)
41 KOG4341 F-box protein containi 98.9 5.1E-11 1.1E-15 104.7 -4.4 309 35-355 97-437 (483)
42 KOG4658 Apoptotic ATPase [Sign 98.9 9.4E-10 2E-14 109.7 3.4 109 90-203 543-653 (889)
43 PF13855 LRR_8: Leucine rich r 98.8 4.3E-09 9.3E-14 69.5 2.8 58 293-355 3-60 (61)
44 KOG2982 Uncharacterized conser 98.8 3.1E-09 6.7E-14 89.7 2.5 111 142-254 46-157 (418)
45 PF13855 LRR_8: Leucine rich r 98.7 7.2E-09 1.6E-13 68.4 3.2 61 267-327 1-61 (61)
46 COG5238 RNA1 Ran GTPase-activa 98.7 1.7E-09 3.7E-14 90.1 0.1 217 88-304 26-285 (388)
47 KOG0531 Protein phosphatase 1, 98.7 2.6E-09 5.6E-14 99.5 0.1 227 86-331 89-321 (414)
48 PF08263 LRRNT_2: Leucine rich 98.7 2.5E-08 5.5E-13 60.3 4.2 40 17-56 2-43 (43)
49 KOG2982 Uncharacterized conser 98.6 8.2E-09 1.8E-13 87.2 1.1 240 80-323 33-287 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.6 1.6E-08 3.4E-13 84.5 1.1 238 59-304 29-316 (388)
51 KOG4341 F-box protein containi 98.4 5.9E-09 1.3E-13 91.9 -4.8 263 92-357 138-414 (483)
52 KOG4579 Leucine-rich repeat (L 98.3 2.7E-08 5.9E-13 74.6 -3.1 108 218-329 29-137 (177)
53 KOG1859 Leucine-rich repeat pr 98.3 1E-08 2.2E-13 96.4 -6.7 126 217-356 165-291 (1096)
54 KOG1859 Leucine-rich repeat pr 98.3 6.3E-08 1.4E-12 91.2 -2.5 157 187-358 104-268 (1096)
55 KOG4579 Leucine-rich repeat (L 98.1 1.5E-07 3.3E-12 70.6 -3.2 60 242-303 76-135 (177)
56 KOG3665 ZYG-1-like serine/thre 98.0 3.7E-06 8E-11 82.3 3.2 154 92-251 122-283 (699)
57 PF12799 LRR_4: Leucine Rich r 98.0 7.4E-06 1.6E-10 49.6 3.2 36 292-328 2-37 (44)
58 KOG3665 ZYG-1-like serine/thre 98.0 4.6E-06 1E-10 81.6 3.1 156 190-353 120-284 (699)
59 KOG1644 U2-associated snRNP A' 97.9 2.5E-05 5.3E-10 62.9 6.3 59 118-179 43-101 (233)
60 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.5E-10 48.1 3.9 37 118-155 2-38 (44)
61 KOG1644 U2-associated snRNP A' 97.9 1.6E-05 3.5E-10 63.9 4.8 85 92-179 42-126 (233)
62 KOG2739 Leucine-rich acidic nu 97.9 5.1E-06 1.1E-10 69.5 2.0 116 83-201 34-152 (260)
63 PRK15386 type III secretion pr 97.9 9.5E-05 2.1E-09 67.2 9.9 75 88-177 48-123 (426)
64 PRK15386 type III secretion pr 97.8 0.00016 3.4E-09 65.8 9.1 136 137-301 48-187 (426)
65 KOG1947 Leucine rich repeat pr 97.6 9.4E-06 2E-10 77.4 -1.8 64 139-202 241-305 (482)
66 KOG2123 Uncharacterized conser 97.5 3.1E-06 6.7E-11 71.3 -5.0 103 91-198 18-123 (388)
67 KOG1947 Leucine rich repeat pr 97.5 2.5E-05 5.5E-10 74.4 -0.0 221 86-328 208-440 (482)
68 KOG2739 Leucine-rich acidic nu 97.4 6.1E-05 1.3E-09 63.2 1.6 40 190-229 89-129 (260)
69 PF00560 LRR_1: Leucine Rich R 97.3 0.00011 2.4E-09 37.0 1.3 22 345-367 1-22 (22)
70 PF13306 LRR_5: Leucine rich r 97.2 0.0012 2.6E-08 50.5 6.6 35 190-225 10-44 (129)
71 KOG2123 Uncharacterized conser 97.1 2E-05 4.4E-10 66.5 -4.8 80 140-226 18-98 (388)
72 PF13306 LRR_5: Leucine rich r 97.0 0.0026 5.7E-08 48.6 6.9 122 209-339 5-126 (129)
73 KOG4308 LRR-containing protein 96.4 3.8E-05 8.2E-10 72.1 -9.1 190 143-332 89-307 (478)
74 KOG4308 LRR-containing protein 95.4 8.3E-05 1.8E-09 69.8 -11.2 212 118-329 88-332 (478)
75 PF13504 LRR_7: Leucine rich r 95.3 0.0099 2.1E-07 27.7 1.1 16 345-361 2-17 (17)
76 PF00560 LRR_1: Leucine Rich R 95.0 0.0092 2E-07 29.9 0.6 17 317-334 2-18 (22)
77 KOG3864 Uncharacterized conser 94.6 0.003 6.5E-08 51.2 -2.8 82 217-301 102-186 (221)
78 KOG3864 Uncharacterized conser 94.3 0.0079 1.7E-07 48.8 -1.1 85 244-328 102-189 (221)
79 PF13516 LRR_6: Leucine Rich r 94.1 0.028 6E-07 28.8 1.1 19 315-333 2-20 (24)
80 PF13516 LRR_6: Leucine Rich r 92.8 0.017 3.7E-07 29.6 -1.0 22 344-365 2-23 (24)
81 smart00370 LRR Leucine-rich re 90.3 0.2 4.3E-06 26.0 1.5 18 345-363 3-20 (26)
82 smart00369 LRR_TYP Leucine-ric 90.3 0.2 4.3E-06 26.0 1.5 18 345-363 3-20 (26)
83 smart00364 LRR_BAC Leucine-ric 88.2 0.32 6.9E-06 25.3 1.2 17 345-362 3-19 (26)
84 smart00368 LRR_RI Leucine rich 87.2 0.57 1.2E-05 24.9 1.9 23 315-337 2-24 (28)
85 KOG0473 Leucine-rich repeat pr 84.1 0.016 3.6E-07 48.1 -7.4 85 241-328 40-124 (326)
86 KOG3763 mRNA export factor TAP 82.1 0.83 1.8E-05 43.1 1.9 69 163-231 215-285 (585)
87 smart00367 LRR_CC Leucine-rich 78.2 1.8 4E-05 22.3 1.7 15 315-329 2-17 (26)
88 KOG4242 Predicted myosin-I-bin 77.3 15 0.00032 34.5 8.1 112 217-329 355-482 (553)
89 KOG0473 Leucine-rich repeat pr 76.1 0.033 7.2E-07 46.4 -8.0 91 209-305 35-125 (326)
90 KOG3763 mRNA export factor TAP 74.4 1.9 4.2E-05 40.8 1.8 65 266-330 217-285 (585)
91 smart00365 LRR_SD22 Leucine-ri 71.5 3.3 7.1E-05 21.6 1.5 13 345-357 3-15 (26)
92 KOG4242 Predicted myosin-I-bin 27.6 4.3E+02 0.0093 25.3 8.3 233 62-304 216-481 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-40 Score=338.02 Aligned_cols=328 Identities=33% Similarity=0.510 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccccEEecCCCCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcE
Q 047861 17 DSEREALLELKQDLKDPSSRLASWNIGDEDCCAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIH 96 (368)
Q Consensus 17 ~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 96 (368)
+.|++||++|++++.+|.+...+|+. ..++|.|.|+.|.. .++|+.|||++ +.+.+.++..+..+++|+.
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~w~~-~~~~c~w~gv~c~~-~~~v~~L~L~~--------~~i~~~~~~~~~~l~~L~~ 97 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSNWNS-SADVCLWQGITCNN-SSRVVSIDLSG--------KNISGKISSAIFRLPYIQT 97 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCCCCC-CCCCCcCcceecCC-CCcEEEEEecC--------CCccccCChHHhCCCCCCE
Confidence 47999999999999888888899986 67899999999975 57999999999 4566666666777777777
Q ss_pred EECCCCCCCCCcCCcccC-CCCCCCEEeCCCCcccCC----------------------cchhcCCCCCCCEEeCCCCcC
Q 047861 97 LDLSGNDFQGIQIPKYLG-SLKNLRYLNLSRANFAGV----------------------TPYQLGSLSNLQYLDLSQNYL 153 (368)
Q Consensus 97 L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~----------------------~~~~l~~l~~L~~L~l~~~~~ 153 (368)
|++++|.+.+. +|..+. .+++|++|++++|.+++. +|..++.+++|++|++++|.+
T Consensus 98 L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 98 INLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 77777776653 555433 556666666666555544 344444444555555554443
Q ss_pred CcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccc
Q 047861 154 LQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLF 233 (368)
Q Consensus 154 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 233 (368)
..... ..+.++++|++|++++|.+... .+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|
T Consensus 177 ~~~~p-~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 177 VGKIP-NSLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred cccCC-hhhhhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 32211 1144455555555555544332 11133455555555665555555555555556666666666665555554
Q ss_pred cccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCccccc
Q 047861 234 QFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVR 313 (368)
Q Consensus 234 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 313 (368)
. .+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 254 ~---~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 254 S---SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred h---hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 4 5556666666666666666566666666666666666666666666666666667777777777666666666667
Q ss_pred CCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccC
Q 047861 314 LCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366 (368)
Q Consensus 314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (368)
+++|+.|++++|.+++.+|..+..++ +|+.|++++|++++.+|..++.
T Consensus 331 l~~L~~L~L~~n~l~~~~p~~l~~~~-----~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 331 LPRLQVLQLWSNKFSGEIPKNLGKHN-----NLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCCCCEEECcCCCCcCcCChHHhCCC-----CCcEEECCCCeeEeeCChhHhC
Confidence 77777777777777776776666666 7777777777777777776654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-32 Score=281.03 Aligned_cols=277 Identities=31% Similarity=0.454 Sum_probs=175.3
Q ss_pred CcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCccc
Q 047861 78 SKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVE 157 (368)
Q Consensus 78 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (368)
+.+.+.+|..++++++|++|++++|.+.+. +|..++++++|++|++++|.+++.+|..++++++|++|++++|.+....
T Consensus 150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 456666777777777777777777777664 6777777777777777777777766777777777777777777655332
Q ss_pred chhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccc
Q 047861 158 SFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGS 237 (368)
Q Consensus 158 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 237 (368)
. ..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|.
T Consensus 229 p-~~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--- 302 (968)
T PLN00113 229 P-YEIGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE--- 302 (968)
T ss_pred C-hhHhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh---
Confidence 2 2256677777777777766543 112445666677777777766666666666666677777766666655555
Q ss_pred hhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCC
Q 047861 238 WVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKL 317 (368)
Q Consensus 238 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 317 (368)
.+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|.+.+.+|..+..+++|
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 55566666666666666666666666666666666666666666666666666666666666666655555555555555
Q ss_pred CEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccC
Q 047861 318 TSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366 (368)
Q Consensus 318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (368)
+.|++++|.+.+.+|..+..++ +|+.|++++|++++.+|+.+.+
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~-----~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACR-----SLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred CEEECcCCEecccCCHHHhCCC-----CCCEEECcCCEeeeECChhHhc
Confidence 5555555555555555554444 5555555555555555554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=4.5e-29 Score=224.17 Aligned_cols=289 Identities=26% Similarity=0.295 Sum_probs=175.0
Q ss_pred CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcC
Q 047861 59 TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLG 138 (368)
Q Consensus 59 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (368)
.++++.|+|..| .++..-.+.+..++.|+.|||+.|.++... ...+..-.++++|+|++|+|+......+.
T Consensus 124 sghl~~L~L~~N--------~I~sv~se~L~~l~alrslDLSrN~is~i~-~~sfp~~~ni~~L~La~N~It~l~~~~F~ 194 (873)
T KOG4194|consen 124 SGHLEKLDLRHN--------LISSVTSEELSALPALRSLDLSRNLISEIP-KPSFPAKVNIKKLNLASNRITTLETGHFD 194 (873)
T ss_pred ccceeEEeeecc--------ccccccHHHHHhHhhhhhhhhhhchhhccc-CCCCCCCCCceEEeecccccccccccccc
Confidence 468888888884 455554556666677777777777665431 12333345666666666666665555666
Q ss_pred CCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCC
Q 047861 139 SLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSL 218 (368)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 218 (368)
.+.+|..|.++.|.++..+... |.++++|+.|++..|++...... .+..+++|+.|.+..|.+.......|..+.++
T Consensus 195 ~lnsL~tlkLsrNrittLp~r~-Fk~L~~L~~LdLnrN~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 195 SLNSLLTLKLSRNRITTLPQRS-FKRLPKLESLDLNRNRIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred ccchheeeecccCcccccCHHH-hhhcchhhhhhccccceeeehhh--hhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 6666666666666666655543 56666666666666665444222 23455555555555555555555555555555
Q ss_pred CeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCh-------------
Q 047861 219 KALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPG------------- 285 (368)
Q Consensus 219 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~------------- 285 (368)
++|+|..|+++..-.. ++.++++|+.|++++|.+...-++.+..+++|+.|+|++|.++...+.
T Consensus 272 e~l~L~~N~l~~vn~g---~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEG---WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred ceeecccchhhhhhcc---cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 5555555555433333 444555555555555555544444555555555555555555433333
Q ss_pred -----------hccCCCCCCEEEccCCcccccC---CcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEc
Q 047861 286 -----------WLSKLNDLEFLSLRSNSLQGKI---PTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVL 351 (368)
Q Consensus 286 -----------~l~~l~~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l 351 (368)
.+..+++|++|+|.+|.+...+ ...+..++.|++|++.||++.......+..+. +|+.|||
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~-----~LE~LdL 423 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLE-----ALEHLDL 423 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCc-----ccceecC
Confidence 3445566777777777665432 33456678888888888888765556666666 8888888
Q ss_pred cCCcceeccCccccCC
Q 047861 352 RSCQFSGHMTNQLGQF 367 (368)
Q Consensus 352 ~~n~l~~~~p~~~~~~ 367 (368)
.+|.|-..-|++|..|
T Consensus 424 ~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM 439 (873)
T ss_pred CCCcceeecccccccc
Confidence 8888877777777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-28 Score=220.72 Aligned_cols=286 Identities=26% Similarity=0.310 Sum_probs=200.3
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
.+..||+++ +.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+.+....+..+
T Consensus 79 ~t~~Ldlsn--------Nkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l 148 (873)
T KOG4194|consen 79 QTQTLDLSN--------NKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSAL 148 (873)
T ss_pred ceeeeeccc--------cccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhH
Confidence 456678777 5777777778899999999999999998 688888888889999999999998888899999
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCe
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKA 220 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (368)
+.|+.||++.|.+..++... +..-.++++|++++|+++..... .+..+.+|..|.++.|+++..++..|..+++|+.
T Consensus 149 ~alrslDLSrN~is~i~~~s-fp~~~ni~~L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPS-FPAKVNIKKLNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchhhcccCCC-CCCCCCceEEeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhh
Confidence 99999999999988887655 67777899999999999887433 3456778889999999999988888888999999
Q ss_pred EEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccC
Q 047861 221 LDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRS 300 (368)
Q Consensus 221 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 300 (368)
|+|..|++...--. .|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++..--.++..++.|+.|++++
T Consensus 226 LdLnrN~irive~l---tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGL---TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhccccceeeehhh---hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 99998887532111 455666666666666665543334445555566666665555443333444555555555555
Q ss_pred CcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhc-------------------ccccccccEEEccCCcceeccC
Q 047861 301 NSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFS-------------------ACGAYALESLVLRSCQFSGHMT 361 (368)
Q Consensus 301 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-------------------~~~~~~L~~L~l~~n~l~~~~p 361 (368)
|.+...-++.+..+++|++|+|++|.++.-.++.+..+. ..++++|++|||++|.++..|-
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 555555555555555555555555555544333333333 0012266666666666665554
Q ss_pred c
Q 047861 362 N 362 (368)
Q Consensus 362 ~ 362 (368)
+
T Consensus 383 D 383 (873)
T KOG4194|consen 383 D 383 (873)
T ss_pred c
Confidence 3
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=8.1e-28 Score=217.98 Aligned_cols=250 Identities=24% Similarity=0.294 Sum_probs=130.2
Q ss_pred CcEEEEecCCCCCCCCCCCccc-ccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLV-GKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLG 138 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (368)
..|+.+|+++| .++ +.+|..+..++.++.|.|...++. .+|+.++.+.+|++|.++.|++... -..+.
T Consensus 7 pFVrGvDfsgN--------DFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~~v-hGELs 75 (1255)
T KOG0444|consen 7 PFVRGVDFSGN--------DFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLISV-HGELS 75 (1255)
T ss_pred ceeecccccCC--------cCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhHhh-hhhhc
Confidence 45777777774 344 445666666666666666666555 4566666666666666666655543 23455
Q ss_pred CCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCC
Q 047861 139 SLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSL 218 (368)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 218 (368)
.++.|+.+.+.+|.+.....+..+..+..|..|+++.|++...|. .+...+++-.|++++|++..++...+.++..|
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 556666666666655544444445555566666666665554433 33444555556666666555555555555555
Q ss_pred CeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC-CCCChhccCCCCCCEEE
Q 047861 219 KALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFN-SAIPGWLSKLNDLEFLS 297 (368)
Q Consensus 219 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~ 297 (368)
-.|||++|++...+| ....+..|++|.+++|.+.-.-...+..+++|+.|++++.+-+ ..+|..+..+.+|..++
T Consensus 153 LfLDLS~NrLe~LPP----Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 153 LFLDLSNNRLEMLPP----QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hhhccccchhhhcCH----HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 555666555543222 3444555555555555443111112223344444444444322 13444444444455555
Q ss_pred ccCCcccccCCcccccCCCCCEEecCCCcCc
Q 047861 298 LRSNSLQGKIPTSFVRLCKLTSIDLSFVKLS 328 (368)
Q Consensus 298 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 328 (368)
++.|.+. .+|+.+.++++|+.|+|++|+++
T Consensus 229 lS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 5544444 44444444444555555554444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=4.6e-26 Score=206.66 Aligned_cols=258 Identities=28% Similarity=0.351 Sum_probs=148.3
Q ss_pred CCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCC
Q 047861 90 DFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLE 169 (368)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 169 (368)
.++.|+.+.++.|++....+|..+.++..|+.|+|+.|++... |..+..-+++-.|++++|.+..+|..- +-++..|-
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~l-finLtDLL 153 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSL-FINLTDLL 153 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchH-HHhhHhHh
Confidence 3444444444444444444555555555555555555555544 555555555555555555555444332 44555555
Q ss_pred EEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCcc-------------------------CCCCCccCCCCCCeEEcc
Q 047861 170 HLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHH-------------------------FPPSSSANFSSLKALDLS 224 (368)
Q Consensus 170 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------------~~~~~~~~~~~L~~L~l~ 224 (368)
.|++++|++...|+ ..+++..|+.|.+++|.+.. ..|..+..+.+|..+|++
T Consensus 154 fLDLS~NrLe~LPP---Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 154 FLDLSNNRLEMLPP---QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred hhccccchhhhcCH---HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 55555555554433 22344444444444443332 234444555566666666
Q ss_pred CCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc
Q 047861 225 QNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 225 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
.|.+. ..|+ .+.++++|+.|++++|.++ .+........+|++|++++|+++ .+|..+.++++|+.|.+.+|+++
T Consensus 231 ~N~Lp-~vPe---cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 231 ENNLP-IVPE---CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred ccCCC-cchH---HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 66554 2233 5556666666666666665 33333444556666666666665 36666677777777777777665
Q ss_pred -ccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCcccc
Q 047861 305 -GKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLG 365 (368)
Q Consensus 305 -~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (368)
.-+|..++++.+|+.+..++|.+. ..|..++.++ .|+.|.|+.|++- ++|+++-
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~-----kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV-----KLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH-----HHHHhccccccee-echhhhh
Confidence 236777777777777777777665 5677777776 8888888888776 6777653
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=6e-20 Score=177.77 Aligned_cols=247 Identities=23% Similarity=0.247 Sum_probs=152.3
Q ss_pred EEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCC
Q 047861 63 LQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSN 142 (368)
Q Consensus 63 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (368)
..||++. +.++ .+|..+. ++|+.|++.+|.++ .+|.. +++|++|++++|+++.. |.. .++
T Consensus 204 ~~LdLs~--------~~Lt-sLP~~l~--~~L~~L~L~~N~Lt--~LP~l---p~~Lk~LdLs~N~LtsL-P~l---p~s 263 (788)
T PRK15387 204 AVLNVGE--------SGLT-TLPDCLP--AHITTLVIPDNNLT--SLPAL---PPELRTLEVSGNQLTSL-PVL---PPG 263 (788)
T ss_pred cEEEcCC--------CCCC-cCCcchh--cCCCEEEccCCcCC--CCCCC---CCCCcEEEecCCccCcc-cCc---ccc
Confidence 3566766 3444 4555554 36777777777777 34542 46777777777777654 321 345
Q ss_pred CCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCC--C---------
Q 047861 143 LQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPS--S--------- 211 (368)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~--------- 211 (368)
|+.|++++|.+...+. ..++|+.|++++|++...+. .+++|+.|++++|.+.+.+.. .
T Consensus 264 L~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~------~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N 332 (788)
T PRK15387 264 LLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------LPPGLQELSVSDNQLASLPALPSELCKLWAYNN 332 (788)
T ss_pred cceeeccCCchhhhhh-----chhhcCEEECcCCccccccc------cccccceeECCCCccccCCCCcccccccccccC
Confidence 6666666665544332 11344455555554443322 123444555555444432110 0
Q ss_pred ----c-cCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChh
Q 047861 212 ----S-ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGW 286 (368)
Q Consensus 212 ----~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 286 (368)
+ ....+|+.|++++|+++. +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|.+++ +|..
T Consensus 333 ~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~l------p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 333 QLTSLPTLPSGLQELSVSDNQLAS-LPTL------PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL 400 (788)
T ss_pred ccccccccccccceEecCCCccCC-CCCC------Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc
Confidence 0 011356777777777663 2221 235666777777766 34532 3568888888888874 4432
Q ss_pred ccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCcccc
Q 047861 287 LSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLG 365 (368)
Q Consensus 287 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (368)
.++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..++ +|+.|+|++|++++.+|..+.
T Consensus 401 ---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~-----~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 ---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLS-----SETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhcc-----CCCeEECCCCCCCchHHHHHH
Confidence 367889999999887 46653 346788999999988 5888888888 999999999999999888763
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=5.3e-19 Score=182.78 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=55.6
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEec
Q 047861 243 HNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDL 322 (368)
Q Consensus 243 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 322 (368)
++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|+|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 455566666655544555556666666666666654333344433 4555555555555333233321 234555555
Q ss_pred CCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccc
Q 047861 323 SFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQL 364 (368)
Q Consensus 323 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (368)
++|.++ .+|..+..++ +|++|++++|+-...+|..+
T Consensus 854 s~n~i~-~iP~si~~l~-----~L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 854 SRTGIE-EVPWWIEKFS-----NLSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CCCCCc-cChHHHhcCC-----CCCEEECCCCCCcCccCccc
Confidence 555554 3444444444 55555555543333444433
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.8e-19 Score=184.85 Aligned_cols=264 Identities=23% Similarity=0.277 Sum_probs=186.9
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
..++.|+++++ .+ ..++..+..+++|+.|+|+++.... .+| .+..+++|++|++++|.....+|..+.+
T Consensus 611 ~~L~~L~L~~s--------~l-~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~ 679 (1153)
T PLN03210 611 ENLVKLQMQGS--------KL-EKLWDGVHSLTGLRNIDLRGSKNLK-EIP-DLSMATNLETLKLSDCSSLVELPSSIQY 679 (1153)
T ss_pred cCCcEEECcCc--------cc-cccccccccCCCCCEEECCCCCCcC-cCC-ccccCCcccEEEecCCCCccccchhhhc
Confidence 45778888873 33 2456666778888888888765332 244 3667888888888887665666777888
Q ss_pred CCCCCEEeCCCCc-CCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCC--------
Q 047861 140 LSNLQYLDLSQNY-LLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPS-------- 210 (368)
Q Consensus 140 l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------- 210 (368)
+++|+.|++++|. +...+. ..++++|++|++++|...... + ....+|++|+++++.+...+..
T Consensus 680 L~~L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L~~~--p---~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~ 751 (1153)
T PLN03210 680 LNKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRLKSF--P---DISTNISWLDLDETAIEEFPSNLRLENLDE 751 (1153)
T ss_pred cCCCCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCcccc--c---cccCCcCeeecCCCcccccccccccccccc
Confidence 8888888888775 333332 125677777777776432221 1 1234566666666654432211
Q ss_pred ---------------------CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCC
Q 047861 211 ---------------------SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFL 269 (368)
Q Consensus 211 ---------------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 269 (368)
....+++|+.|++++|.....+|. .++++++|+.|++++|...+.+|..+ .+++|
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~---si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL 827 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS---SIQNLHKLEHLEIENCINLETLPTGI-NLESL 827 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh---hhhCCCCCCEEECCCCCCcCeeCCCC-Ccccc
Confidence 111235788888888876666666 78899999999999987655777665 68999
Q ss_pred CEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEE
Q 047861 270 RHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESL 349 (368)
Q Consensus 270 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L 349 (368)
+.|++++|.....+|.. .++|+.|++++|.+. .+|..+..+++|+.|++++|+-...+|..+..++ +|+.+
T Consensus 828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~-----~L~~L 898 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK-----HLETV 898 (1153)
T ss_pred CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccccccc-----CCCee
Confidence 99999998655445442 468999999999998 7899999999999999999766556777666666 89999
Q ss_pred EccCCc
Q 047861 350 VLRSCQ 355 (368)
Q Consensus 350 ~l~~n~ 355 (368)
++++|.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 999985
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=9e-24 Score=182.44 Aligned_cols=237 Identities=27% Similarity=0.406 Sum_probs=144.6
Q ss_pred ccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhc
Q 047861 84 INLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLS 163 (368)
Q Consensus 84 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 163 (368)
+.+.+.++..++.|++++|++. .+|++++.+..++.++.+.|++... |..++.+.+|+.++.+.|.+...+.. ++
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls~l-p~~i~s~~~l~~l~~s~n~~~el~~~--i~ 134 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLSEL-PEQIGSLISLVKLDCSSNELKELPDS--IG 134 (565)
T ss_pred ccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHhhc-cHHHhhhhhhhhhhccccceeecCch--HH
Confidence 3345556666666666666665 4666666666666666666666544 55666666666666666655444332 33
Q ss_pred CCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCC
Q 047861 164 GLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLH 243 (368)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 243 (368)
.+..++.++..+|++...++ .+..+.++..+++.+|.+....+. .+ .++
T Consensus 135 --------------------------~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~~~---~i-~m~ 183 (565)
T KOG0472|consen 135 --------------------------RLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLKALPEN---HI-AMK 183 (565)
T ss_pred --------------------------HHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchhhCCHH---HH-HHH
Confidence 44445555555555544432 334455666666666666544443 22 266
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccc-cCCCCCEEec
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFV-RLCKLTSIDL 322 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l 322 (368)
.|++|+...|-+. .+|..++.+.+|+.|++.+|++. .+| .|+.+..|++|++..|++. .+|.+.. +++++..||+
T Consensus 184 ~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 184 RLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDL 259 (565)
T ss_pred HHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeec
Confidence 6666666666555 66666677777777777777664 244 5666677777777777666 5554443 6667777777
Q ss_pred CCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccCC
Q 047861 323 SFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 323 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
+.|+++ +.|+.++.+. +|++||+++|.|+ .+|.++++|
T Consensus 260 RdNklk-e~Pde~clLr-----sL~rLDlSNN~is-~Lp~sLgnl 297 (565)
T KOG0472|consen 260 RDNKLK-EVPDEICLLR-----SLERLDLSNNDIS-SLPYSLGNL 297 (565)
T ss_pred cccccc-cCchHHHHhh-----hhhhhcccCCccc-cCCcccccc
Confidence 777776 4666666666 6777777777777 467666664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=2.4e-22 Score=173.69 Aligned_cols=263 Identities=26% Similarity=0.398 Sum_probs=173.5
Q ss_pred ccccccc-CCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccch--
Q 047861 83 KINLSLV-DFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESF-- 159 (368)
Q Consensus 83 ~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-- 159 (368)
.+|+... +++++..||++.|+++ +.|+.++.+.+|.+||+++|.+++. |..++++ +|+.|-+.+|++..+...
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklk--e~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLK--EVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred hhHHHHhcccccceeeeccccccc--cCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHH
Confidence 3455544 7888888888888887 6788888888888888888888876 6778888 888888888875322110
Q ss_pred --------------------------------------hhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccC
Q 047861 160 --------------------------------------SWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSY 201 (368)
Q Consensus 160 --------------------------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 201 (368)
.....+.+.+.|+++.-+++..|+-.+....-.-....+++.
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 001112234444444444444433332222222334444444
Q ss_pred CCCccCCCCCccCCCCC-CeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC
Q 047861 202 CELHHFPPSSSANFSSL-KALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFN 280 (368)
Q Consensus 202 ~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 280 (368)
|++...+. .+..+..+ +.+.++.|.+. .++. .++.+++|..|++++|.+. .+|..++.+..|+.++++.|+|.
T Consensus 398 NqL~elPk-~L~~lkelvT~l~lsnn~is-fv~~---~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 398 NQLCELPK-RLVELKELVTDLVLSNNKIS-FVPL---ELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred chHhhhhh-hhHHHHHHHHHHHhhcCccc-cchH---HHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc
Confidence 44433321 11222211 22333333332 3333 6677888888888888776 78888888888888898888875
Q ss_pred CCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceecc
Q 047861 281 SAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHM 360 (368)
Q Consensus 281 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (368)
..|..+..+..++.+-.++|++...-++.+.++.+|..||+.+|.+. .+|..++++. +|+.|++++|.|. .
T Consensus 472 -~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt-----nL~hLeL~gNpfr--~ 542 (565)
T KOG0472|consen 472 -MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT-----NLRHLELDGNPFR--Q 542 (565)
T ss_pred -cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc-----ceeEEEecCCccC--C
Confidence 57777766677777777778887555566889999999999999998 5888889998 9999999999988 6
Q ss_pred Cccc
Q 047861 361 TNQL 364 (368)
Q Consensus 361 p~~~ 364 (368)
|...
T Consensus 543 Pr~~ 546 (565)
T KOG0472|consen 543 PRHQ 546 (565)
T ss_pred CHHH
Confidence 6543
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.82 E-value=2e-21 Score=175.01 Aligned_cols=273 Identities=25% Similarity=0.201 Sum_probs=187.2
Q ss_pred cccccccCCCCCcEEECCCCCCCCC---cCCcccCCCCCCCEEeCCCCcccC------CcchhcCCCCCCCEEeCCCCcC
Q 047861 83 KINLSLVDFKHLIHLDLSGNDFQGI---QIPKYLGSLKNLRYLNLSRANFAG------VTPYQLGSLSNLQYLDLSQNYL 153 (368)
Q Consensus 83 ~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~ 153 (368)
.....+..+..|++++++++.++.. .++..+...+.|++++++++.+.+ .++..+..+++|++|++++|.+
T Consensus 14 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 14 RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 3444556677789999998887542 245556677788888888877652 2234566788999999998887
Q ss_pred CcccchhhhcCC---CCCCEEeCCCCCCCCC--chhhhhcCCC-CCCCEEEccCCCCccCC----CCCccCCCCCCeEEc
Q 047861 154 LQVESFSWLSGL---SLLEHLDLSQADLSKA--TDWLLVTNSL-SSLKVLNLSYCELHHFP----PSSSANFSSLKALDL 223 (368)
Q Consensus 154 ~~~~~~~~~~~l---~~L~~L~l~~~~~~~~--~~~~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l 223 (368)
...... .+..+ ++|++|++++|.+... ......+..+ ++|++|++++|.+++.. ...+..+++|++|++
T Consensus 94 ~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l 172 (319)
T cd00116 94 GPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172 (319)
T ss_pred ChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence 543222 12223 4599999998887643 2222344556 88999999999887422 234456678999999
Q ss_pred cCCCCCCccc-cccchhcCCCCccEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCCCCChhcc-----CCCCC
Q 047861 224 SQNQFNNSLF-QFGSWVFGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLRHLDLSDNEFNSAIPGWLS-----KLNDL 293 (368)
Q Consensus 224 ~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L 293 (368)
++|.+++... .+...+...++|+.|++++|.+.+. +...+..+++|++|++++|.+++..+..+. ..+.|
T Consensus 173 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred cCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 9998875322 2222455667999999999988643 334556788999999999998763333332 24799
Q ss_pred CEEEccCCcccc----cCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcc
Q 047861 294 EFLSLRSNSLQG----KIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQF 356 (368)
Q Consensus 294 ~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l 356 (368)
++|++++|.+++ .+...+..+++|+++++++|.+++.....+.....+.-+.|+++++.+|++
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 999999998862 344566677899999999999997755444433222223899999988864
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=3.3e-18 Score=166.64 Aligned_cols=228 Identities=19% Similarity=0.309 Sum_probs=121.2
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 171 (368)
.+.+.|++++++++ ++|..+ .++|+.|++++|.++.. |..+. .+|++|++++|.+..++.. -.++|+.|
T Consensus 178 ~~~~~L~L~~~~Lt--sLP~~I--p~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~LtsLP~~----l~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT--TIPACI--PEQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLTSIPAT----LPDTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC--cCCccc--ccCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccccCChh----hhccccEE
Confidence 34667777777766 355544 24677777777777654 43332 4677777777776655421 12457777
Q ss_pred eCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEcc
Q 047861 172 DLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLS 251 (368)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 251 (368)
++++|.+...+... ..+|+.|++++|.+... |..+ ..+|+.|++++|.++..... + .++|+.|+++
T Consensus 247 ~Ls~N~L~~LP~~l-----~s~L~~L~Ls~N~L~~L-P~~l--~~sL~~L~Ls~N~Lt~LP~~----l--p~sL~~L~Ls 312 (754)
T PRK15370 247 ELSINRITELPERL-----PSALQSLDLFHNKISCL-PENL--PEELRYLSVYDNSIRTLPAH----L--PSGITHLNVQ 312 (754)
T ss_pred ECcCCccCcCChhH-----hCCCCEEECcCCccCcc-cccc--CCCCcEEECCCCccccCccc----c--hhhHHHHHhc
Confidence 77777766554321 24567777777766643 2222 24677777777766642211 1 1245555566
Q ss_pred CCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccc
Q 047861 252 GNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDL 331 (368)
Q Consensus 252 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 331 (368)
+|.+. .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++. +
T Consensus 313 ~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-L 382 (754)
T PRK15370 313 SNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-L 382 (754)
T ss_pred CCccc-cCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-C
Confidence 65555 233322 2455555555555543 333332 45555555555554 3443332 355555555555552 3
Q ss_pred hhhHhhhcccccccccEEEccCCcceeccCc
Q 047861 332 SQVLDIFSACGAYALESLVLRSCQFSGHMTN 362 (368)
Q Consensus 332 ~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (368)
|..+. . +|+.|++++|+++ .+|.
T Consensus 383 P~~l~--~-----sL~~LdLs~N~L~-~LP~ 405 (754)
T PRK15370 383 PENLP--A-----ALQIMQASRNNLV-RLPE 405 (754)
T ss_pred CHhHH--H-----HHHHHhhccCCcc-cCch
Confidence 33322 1 4555555555554 3443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=3e-21 Score=182.55 Aligned_cols=246 Identities=29% Similarity=0.404 Sum_probs=170.0
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 171 (368)
.+|++++++.+.++ .+|+.++.+.+|+.++...|+++.. |..+....+|+.|.+..|.+..++.. ...++.|++|
T Consensus 241 ~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~~--le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPPF--LEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhh--cchHHHHhcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCCc--ccccceeeee
Confidence 45666667666666 3556666677777777766666433 55666666666666666666655543 5567778888
Q ss_pred eCCCCCCCCCchhhhhcCCCC-CCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEc
Q 047861 172 DLSQADLSKATDWLLVTNSLS-SLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDL 250 (368)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l 250 (368)
++..|.+...++... .... .++.|+.+.+.+...+...-...+.|+.|++.+|.+++...+ .+.+++.|+.|+|
T Consensus 316 dL~~N~L~~lp~~~l--~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhL 390 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFL--AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP---VLVNFKHLKVLHL 390 (1081)
T ss_pred eehhccccccchHHH--hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh---hhccccceeeeee
Confidence 888887777755221 2222 356666666666555433323456788888888888877665 5778888889999
Q ss_pred cCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCccc
Q 047861 251 SGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 251 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
++|++.......+.+++.|++|+|++|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++..
T Consensus 391 syNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 391 SYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 988887433455677888888899998887 46788888888888888888887 667 678888888888888888753
Q ss_pred chhhHhhhcccccccccEEEccCCc
Q 047861 331 LSQVLDIFSACGAYALESLVLRSCQ 355 (368)
Q Consensus 331 ~~~~l~~~~~~~~~~L~~L~l~~n~ 355 (368)
.......-+ +|++||+++|.
T Consensus 468 ~l~~~~p~p-----~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 468 TLPEALPSP-----NLKYLDLSGNT 487 (1081)
T ss_pred hhhhhCCCc-----ccceeeccCCc
Confidence 322212114 88888888885
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=1.8e-18 Score=168.48 Aligned_cols=250 Identities=21% Similarity=0.297 Sum_probs=186.5
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
..+.+++++. .++ .+|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++.. |..+.
T Consensus 179 ~~~~L~L~~~--------~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt--sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~-- 240 (754)
T PRK15370 179 NKTELRLKIL--------GLT-TIPACIP--EQITTLILDNNELK--SLPENLQ--GNIKTLYANSNQLTSI-PATLP-- 240 (754)
T ss_pred CceEEEeCCC--------CcC-cCCcccc--cCCcEEEecCCCCC--cCChhhc--cCCCEEECCCCccccC-Chhhh--
Confidence 4678888773 333 3444442 57999999999998 4676654 6899999999999865 55443
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCe
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKA 220 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (368)
++|+.|++++|.+..++.. + ..+|+.|++++|.+...+. . -.++|+.|++++|.+...+. .+ .++|+.
T Consensus 241 ~~L~~L~Ls~N~L~~LP~~--l--~s~L~~L~Ls~N~L~~LP~---~--l~~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~ 308 (754)
T PRK15370 241 DTIQEMELSINRITELPER--L--PSALQSLDLFHNKISCLPE---N--LPEELRYLSVYDNSIRTLPA-HL--PSGITH 308 (754)
T ss_pred ccccEEECcCCccCcCChh--H--hCCCCEEECcCCccCcccc---c--cCCCCcEEECCCCccccCcc-cc--hhhHHH
Confidence 5899999999998876542 2 3589999999999886654 1 23589999999999887543 22 257999
Q ss_pred EEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccC
Q 047861 221 LDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRS 300 (368)
Q Consensus 221 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 300 (368)
|++++|.++.. |. .+ .++|+.|++++|.++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++
T Consensus 309 L~Ls~N~Lt~L-P~---~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~ 376 (754)
T PRK15370 309 LNVQSNSLTAL-PE---TL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSR 376 (754)
T ss_pred HHhcCCccccC-Cc---cc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCC
Confidence 99999998853 32 12 358999999999988 4666553 789999999999974 565543 7899999999
Q ss_pred CcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcce
Q 047861 301 NSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFS 357 (368)
Q Consensus 301 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~ 357 (368)
|.++ .+|..+. ..|+.|++++|++. .+|..+..+. ..++++..|++.+|.++
T Consensus 377 N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~-~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 377 NALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFR-GEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHh-hcCCCccEEEeeCCCcc
Confidence 9998 6776654 36899999999998 4555544432 12238899999999885
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=1.5e-19 Score=162.72 Aligned_cols=258 Identities=24% Similarity=0.235 Sum_probs=188.0
Q ss_pred EEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCC----cchhcCCCCCCCEEeCCCCcCCc--cc---chhhhcCCC
Q 047861 96 HLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGV----TPYQLGSLSNLQYLDLSQNYLLQ--VE---SFSWLSGLS 166 (368)
Q Consensus 96 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~--~~---~~~~~~~l~ 166 (368)
.|+|..+.+++......+..+..|+.|+++++.++.. ++..+...+.+++++++++.+.. .. ....+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4778888887655667777788899999999998643 34556678889999999987652 11 123467789
Q ss_pred CCCEEeCCCCCCCCC--chhhhhcCCCCCCCEEEccCCCCccCC----CCCccCC-CCCCeEEccCCCCCCccc-cccch
Q 047861 167 LLEHLDLSQADLSKA--TDWLLVTNSLSSLKVLNLSYCELHHFP----PSSSANF-SSLKALDLSQNQFNNSLF-QFGSW 238 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~n~l~~~~~-~~~~~ 238 (368)
+|++|+++++.+... ..+...... ++|++|++++|.+.+.. ...+..+ ++|++|++++|.+++... .+...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 999999999998743 222222233 67999999999887422 2234455 899999999999985332 22335
Q ss_pred hcCCCCccEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCCC----CChhccCCCCCCEEEccCCcccccCCcc
Q 047861 239 VFGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLRHLDLSDNEFNSA----IPGWLSKLNDLEFLSLRSNSLQGKIPTS 310 (368)
Q Consensus 239 ~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 310 (368)
+..+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++. +...+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 66778999999999998743 333455667999999999998754 3345667899999999999988633332
Q ss_pred cc-----cCCCCCEEecCCCcCcccch----hhHhhhcccccccccEEEccCCcceec
Q 047861 311 FV-----RLCKLTSIDLSFVKLSQDLS----QVLDIFSACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 311 l~-----~l~~L~~L~l~~n~l~~~~~----~~l~~~~~~~~~~L~~L~l~~n~l~~~ 359 (368)
+. ..+.|++|++++|.+++... ..+..++ +|+++++++|.++..
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~-----~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-----SLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC-----CccEEECCCCCCcHH
Confidence 22 24799999999999985433 3334344 999999999999843
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.3e-17 Score=161.73 Aligned_cols=233 Identities=24% Similarity=0.245 Sum_probs=157.6
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.|+++.| .++. +|. ..++|++|++++|.++. +|.. .++|++|++++|.++.. |..
T Consensus 222 ~~L~~L~L~~N--------~Lt~-LP~---lp~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~~L-p~l--- 280 (788)
T PRK15387 222 AHITTLVIPDN--------NLTS-LPA---LPPELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLTHL-PAL--- 280 (788)
T ss_pred cCCCEEEccCC--------cCCC-CCC---CCCCCcEEEecCCccCc--ccCc---ccccceeeccCCchhhh-hhc---
Confidence 35788888884 3332 342 24788999999998883 5542 35667777777666543 221
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhc--------------CCCCCCCEEEccCCCCc
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVT--------------NSLSSLKVLNLSYCELH 205 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~~~~~ 205 (368)
..+|+.|++++|.+...+. ..++|+.|++++|.+...+..+..+ ....+|+.|++++|.+.
T Consensus 281 p~~L~~L~Ls~N~Lt~LP~-----~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 281 PSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355 (788)
T ss_pred hhhcCEEECcCCccccccc-----cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccC
Confidence 1344445555554443321 1234444444444444332211100 01247999999999998
Q ss_pred cCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCh
Q 047861 206 HFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPG 285 (368)
Q Consensus 206 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 285 (368)
..+. ...+|+.|++++|.++. +|. . ..+|+.|++++|.+. .+|.. .++|+.|++++|.+++ +|.
T Consensus 356 ~LP~----lp~~L~~L~Ls~N~L~~-LP~---l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~ 419 (788)
T PRK15387 356 SLPT----LPSELYKLWAYNNRLTS-LPA---L---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPM 419 (788)
T ss_pred CCCC----CCcccceehhhcccccc-Ccc---c---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCc
Confidence 7543 14678999999999884 443 1 357999999999998 45543 3689999999999975 554
Q ss_pred hccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhh
Q 047861 286 WLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIF 338 (368)
Q Consensus 286 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 338 (368)
. ..+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..+
T Consensus 420 l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 420 L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 3 357899999999998 789999999999999999999999888777543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=7.4e-20 Score=173.22 Aligned_cols=254 Identities=25% Similarity=0.281 Sum_probs=209.1
Q ss_pred cccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhh
Q 047861 83 KINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWL 162 (368)
Q Consensus 83 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 162 (368)
.+|..+..+.+|+.++..+|.++ .+|..+....+|++|.+..|.+... |.....+..|++|++..|.+...+... +
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yi-p~~le~~~sL~tLdL~~N~L~~lp~~~-l 330 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYI-PPFLEGLKSLRTLDLQSNNLPSLPDNF-L 330 (1081)
T ss_pred cchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhC-CCcccccceeeeeeehhccccccchHH-H
Confidence 35688899999999999999996 6899999999999999999999887 678888999999999999988877633 4
Q ss_pred cCCCC-CCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcC
Q 047861 163 SGLSL-LEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFG 241 (368)
Q Consensus 163 ~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 241 (368)
..... |+.|+.+.+.+...+.. .-..+..|+.|++.+|.+++..-..+.+.++|+.|+|++|++...... .+.+
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~--~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas---~~~k 405 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSY--EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS---KLRK 405 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccc--cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH---HHhc
Confidence 44444 88888888888777532 224677899999999999998877888999999999999998754444 6889
Q ss_pred CCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccccc-CCcccccCCCCCEE
Q 047861 242 LHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGK-IPTSFVRLCKLTSI 320 (368)
Q Consensus 242 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L 320 (368)
+..|+.|++++|.++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|+++.. +|.... .++|++|
T Consensus 406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyL 481 (1081)
T KOG0618|consen 406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYL 481 (1081)
T ss_pred hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Cccccee
Confidence 999999999999998 88999999999999999999986 456 788999999999999998743 444433 3899999
Q ss_pred ecCCCcCcccchhhHhhhcccccccccEEEccCC
Q 047861 321 DLSFVKLSQDLSQVLDIFSACGAYALESLVLRSC 354 (368)
Q Consensus 321 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 354 (368)
|++||.-....-..+..+. .+..+++.-+
T Consensus 482 dlSGN~~l~~d~~~l~~l~-----~l~~~~i~~~ 510 (1081)
T KOG0618|consen 482 DLSGNTRLVFDHKTLKVLK-----SLSQMDITLN 510 (1081)
T ss_pred eccCCcccccchhhhHHhh-----hhhheecccC
Confidence 9999985443444555555 6666666665
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=2.6e-19 Score=154.75 Aligned_cols=130 Identities=23% Similarity=0.267 Sum_probs=76.9
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCC-CcccCCcchhcCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSR-ANFAGVTPYQLGS 139 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~ 139 (368)
..++|+|.. ++++...|.+|+.+++|+.|||++|.|+.+ -|.+|..++.|..|.+.+ |+|+......++.
T Consensus 68 ~tveirLdq--------N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 68 ETVEIRLDQ--------NQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred cceEEEecc--------CCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 456666666 455555566677777777777777777665 566676677766666655 6666665556666
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYC 202 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 202 (368)
+..|+.|.+.-|.+.-+.. ..+..+++|..|.+..|.+...... .+..+..++.+.+..|
T Consensus 139 L~slqrLllNan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~~--tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICKG--TFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHHHHHhcChhhhcchhH-HHHHHhhhcchhcccchhhhhhccc--cccchhccchHhhhcC
Confidence 6666666666555433322 2256666666666666655444221 2234445555554444
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=4.7e-19 Score=136.46 Aligned_cols=164 Identities=25% Similarity=0.406 Sum_probs=137.2
Q ss_pred CCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCC
Q 047861 190 SLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFL 269 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 269 (368)
.+..++.|.+++|.++..+| .+..+.+|+.|++.+|++++. |. .++.+++|+.|+++-|.+. .+|..|+.+|.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie~l-p~---~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIEEL-PT---SISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhhhc-Ch---hhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 45667778888888877655 467788899999999988743 33 6788899999999988887 788889999999
Q ss_pred CEEeCCCCcCCC-CCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccE
Q 047861 270 RHLDLSDNEFNS-AIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALES 348 (368)
Q Consensus 270 ~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~ 348 (368)
+.|++.+|++.. ..|..+..+..|+-|+++.|.+. .+|..++++++|+.|.+..|.+. ++|..++.+. +|++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt-----~lre 177 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT-----RLRE 177 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH-----HHHH
Confidence 999999998865 46667777888899999999887 78888999999999999999888 5888889888 9999
Q ss_pred EEccCCcceeccCccccCC
Q 047861 349 LVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 349 L~l~~n~l~~~~p~~~~~~ 367 (368)
|.+.+|+++ .+|++++++
T Consensus 178 lhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 178 LHIQGNRLT-VLPPELANL 195 (264)
T ss_pred Hhcccceee-ecChhhhhh
Confidence 999999998 799988875
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.67 E-value=3.4e-18 Score=147.86 Aligned_cols=256 Identities=24% Similarity=0.250 Sum_probs=189.8
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCC-CcCCcccchhhhcCCCCCCE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQ-NYLLQVESFSWLSGLSLLEH 170 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~ 170 (368)
+..+.++|..|+|+.+ -+.+|+.+++|+.|+|+.|.|+.+.|+++..+.+|..|-+.+ |+++.++... |..+..|+.
T Consensus 67 ~~tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~-F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA-FGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH-hhhHHHHHH
Confidence 4567899999999965 556789999999999999999999999999999998877666 8888877554 899999999
Q ss_pred EeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCc--cc-------cccchhcC
Q 047861 171 LDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNS--LF-------QFGSWVFG 241 (368)
Q Consensus 171 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~-------~~~~~~~~ 241 (368)
|.+..|++.-...- .+..++++..|.+.+|.+.......+..+..++.+.+..|.+-.. .+ ..+..+++
T Consensus 145 LllNan~i~Cir~~--al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 145 LLLNANHINCIRQD--ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HhcChhhhcchhHH--HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 99998888766332 557899999999999988888777888888999998887763110 00 00001111
Q ss_pred CCC----------------------ccEE---EccCCcCCCCCC-ccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCE
Q 047861 242 LHN----------------------LVFF---DLSGNQFQGKIP-IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEF 295 (368)
Q Consensus 242 ~~~----------------------L~~L---~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 295 (368)
..- ++.+ -.+.+...+.-| ..|..+++|++|++++|++++.-+.++.....+++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 111 1111 111121222222 23667888888888888888877788888888888
Q ss_pred EEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcc
Q 047861 296 LSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQF 356 (368)
Q Consensus 296 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l 356 (368)
|.|..|++...-...+.++..|+.|+|.+|+++...|..|..+. +|.+|.|-.|.+
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~-----~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF-----SLSTLNLLSNPF 358 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc-----eeeeeehccCcc
Confidence 88888888755556777888888888888888888888887777 888888877654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=6.2e-17 Score=124.87 Aligned_cols=69 Identities=29% Similarity=0.473 Sum_probs=34.1
Q ss_pred CCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccc
Q 047861 241 GLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFV 312 (368)
Q Consensus 241 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 312 (368)
.+..|+.|.+++|.+. .+|..++.+++|+.|.+.+|.+- ..|..++.+..|++|++.+|+++ .+|.+++
T Consensus 125 ~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 125 YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 3444444445555444 44444555555555555555443 24455555555555555555554 4444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.54 E-value=6.1e-14 Score=136.11 Aligned_cols=152 Identities=31% Similarity=0.461 Sum_probs=120.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCc----ccccEEecCC--C--CcEEEEecCCCCCCCCCCCcccccc
Q 047861 13 VGCIDSEREALLELKQDLKDPSSRLASWNIGDEDCC----AWGGVVCNNF--T--GHVLQLNLGNPNPNNGTGSKLVGKI 84 (368)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c----~w~gv~c~~~--~--~~v~~l~l~~~~~~~~~~~~~~~~~ 84 (368)
..+...|.+||..++.++.++.. .+|. +..|+ .|.|+.|... . .+++.|+|++ +.+.|.+
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~g~i 434 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------QGLRGFI 434 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCC--------CCccccC
Confidence 35567899999999999866542 4796 43332 7999999532 2 2599999999 6889999
Q ss_pred cccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcC
Q 047861 85 NLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSG 164 (368)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (368)
|..+..+++|+.|+|++|.+.+. +|..++.+++|+.|+|++|++++.+|..++++++|++|++++|.+....+......
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 99999999999999999999986 99999999999999999999999999999999999999999998764433221122
Q ss_pred CCCCCEEeCCCCC
Q 047861 165 LSLLEHLDLSQAD 177 (368)
Q Consensus 165 l~~L~~L~l~~~~ 177 (368)
..++..+++.+|.
T Consensus 514 ~~~~~~l~~~~N~ 526 (623)
T PLN03150 514 LLHRASFNFTDNA 526 (623)
T ss_pred cccCceEEecCCc
Confidence 2345555555543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.45 E-value=9.6e-15 Score=124.93 Aligned_cols=189 Identities=22% Similarity=0.203 Sum_probs=94.2
Q ss_pred CCCCCCEEeCCCCcCCcccch---hhhcCCCCCCEEeCCCCCCCCCch-----------hhhhcCCCCCCCEEEccCCCC
Q 047861 139 SLSNLQYLDLSQNYLLQVESF---SWLSGLSLLEHLDLSQADLSKATD-----------WLLVTNSLSSLKVLNLSYCEL 204 (368)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~ 204 (368)
.+++|++||||+|.+.+.... .++..+..|++|.+.+|.+..... ........++|+.+...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 445555555555554332221 234455555555555555544311 111223344555555555554
Q ss_pred ccCCC----CCccCCCCCCeEEccCCCCCCccc-cccchhcCCCCccEEEccCCcCCCC----CCccccCCCCCCEEeCC
Q 047861 205 HHFPP----SSSANFSSLKALDLSQNQFNNSLF-QFGSWVFGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLRHLDLS 275 (368)
Q Consensus 205 ~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~ 275 (368)
..... ..+...+.|+.+.+..|.+..... .....+..++.|++|++.+|.++.. +...+..+++|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 43322 222334556666666555543222 2222455566666666666655422 22334455666666666
Q ss_pred CCcCCCCCChhc-----cCCCCCCEEEccCCccccc----CCcccccCCCCCEEecCCCcC
Q 047861 276 DNEFNSAIPGWL-----SKLNDLEFLSLRSNSLQGK----IPTSFVRLCKLTSIDLSFVKL 327 (368)
Q Consensus 276 ~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 327 (368)
+|.+.......+ ...|+|+.+.+.+|.++.. +...+...+.|..|+|++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 666655433332 2356666666666666522 223344466667777777766
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=7.8e-14 Score=119.42 Aligned_cols=194 Identities=23% Similarity=0.228 Sum_probs=146.3
Q ss_pred hcCCCCCCEEeCCCCCCCCC--chhhhhcCCCCCCCEEEccCCCCccCCC-------------CCccCCCCCCeEEccCC
Q 047861 162 LSGLSLLEHLDLSQADLSKA--TDWLLVTNSLSSLKVLNLSYCELHHFPP-------------SSSANFSSLKALDLSQN 226 (368)
Q Consensus 162 ~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~n 226 (368)
+..+++|++++++.|-+... ..+...++++..|++|.+.+|.+..... ......+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 56778999999999988655 5555667889999999999998764322 22345688999999999
Q ss_pred CCCCcccc-ccchhcCCCCccEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCCC----CChhccCCCCCCEEE
Q 047861 227 QFNNSLFQ-FGSWVFGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLRHLDLSDNEFNSA----IPGWLSKLNDLEFLS 297 (368)
Q Consensus 227 ~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ 297 (368)
++.+.... ....+...+.|+.+.+..|.+... +...+..+++|+.|+|.+|.++.. +...++.++.|++++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 98754432 333577788999999999987532 234567899999999999999764 334667889999999
Q ss_pred ccCCcccccCCccc-----ccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcc
Q 047861 298 LRSNSLQGKIPTSF-----VRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQF 356 (368)
Q Consensus 298 l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l 356 (368)
+++|.+...-..++ ...++|+.|.+.+|.++.+....+..+. ...+.|..|+|++|++
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCcccc
Confidence 99998875433322 3478999999999999875443333321 2244999999999998
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=7.6e-14 Score=122.75 Aligned_cols=214 Identities=27% Similarity=0.242 Sum_probs=130.7
Q ss_pred ccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCc--chhcCCCCCCCEEeCCCCcCCcccchhhhcCC
Q 047861 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVT--PYQLGSLSNLQYLDLSQNYLLQVESFSWLSGL 165 (368)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 165 (368)
-+++.+|+...|.++.+...........|++++.|+|+.|-+.... ......+|+|+.|+++.|.+........-..+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3567778888888777654322245677888888888887665332 23345678888888888875544433334466
Q ss_pred CCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCc
Q 047861 166 SLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNL 245 (368)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 245 (368)
++|+.|.++.|.++ ..++...+..+|+|+.|++..|............++.|++|+|++|.+-..... ...+.++.|
T Consensus 197 ~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~--~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG--YKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc--cccccccch
Confidence 77888888888776 333444556777888888877752222222333456777788877766432210 135667777
Q ss_pred cEEEccCCcCCCC-CCcc-----ccCCCCCCEEeCCCCcCCCC-CChhccCCCCCCEEEccCCccc
Q 047861 246 VFFDLSGNQFQGK-IPIG-----LGNLTFLRHLDLSDNEFNSA-IPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 246 ~~L~l~~n~l~~~-~~~~-----l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
+.|+++.+.+... .|+. ...+++|++|++..|++.+. ....+..+++|+.|.+..|.+.
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777777766532 2222 24457777777777776431 2234455666777776666665
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=6.7e-13 Score=116.86 Aligned_cols=212 Identities=26% Similarity=0.257 Sum_probs=140.4
Q ss_pred CCCCCCCEEeCCCCcccCCcc-hhcCCCCCCCEEeCCCCcCCcccc-hhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCC
Q 047861 114 GSLKNLRYLNLSRANFAGVTP-YQLGSLSNLQYLDLSQNYLLQVES-FSWLSGLSLLEHLDLSQADLSKATDWLLVTNSL 191 (368)
Q Consensus 114 ~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 191 (368)
.++++|+.+.|.++.+..... .....|++++.||+++|-+..... ......+|+|+.|+++.|++....... ....+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~-~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN-TTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc-chhhh
Confidence 457788888888887664422 245578889999999887655433 244678888999998888876552211 11357
Q ss_pred CCCCEEEccCCCCccCCC-CCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCC--ccccCCCC
Q 047861 192 SSLKVLNLSYCELHHFPP-SSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIP--IGLGNLTF 268 (368)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~l~~ 268 (368)
+.|+.|.++.|+++.... .....+++|+.|++..|........ ...-+..|++|+|++|++.. .+ ...+.++.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~---~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT---STKILQTLQELDLSNNNLID-FDQGYKVGTLPG 272 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc---hhhhhhHHhhccccCCcccc-cccccccccccc
Confidence 788888888888764221 2234578888888888842111111 23345678888888888762 22 34567888
Q ss_pred CCEEeCCCCcCCCC-CChh-----ccCCCCCCEEEccCCccccc-CCcccccCCCCCEEecCCCcCccc
Q 047861 269 LRHLDLSDNEFNSA-IPGW-----LSKLNDLEFLSLRSNSLQGK-IPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 269 L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
|+.|+++.+.+.+. .|.. ...+++|+.|++..|++.+. ....+..+++|+.|.+..|.+..+
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 88888888887652 2222 34578888888888888521 223456677888888888877653
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.22 E-value=4.1e-11 Score=116.57 Aligned_cols=114 Identities=25% Similarity=0.302 Sum_probs=91.5
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecC
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLS 323 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 323 (368)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCcccchhhHhhhcccccccccEEEccCCcceeccC
Q 047861 324 FVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMT 361 (368)
Q Consensus 324 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (368)
+|.+++.+|..+.... .++..+++.+|......|
T Consensus 499 ~N~l~g~iP~~l~~~~----~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRL----LHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhcc----ccCceEEecCCccccCCC
Confidence 8888888887776532 156778888776544444
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=5.6e-12 Score=106.19 Aligned_cols=131 Identities=27% Similarity=0.351 Sum_probs=85.3
Q ss_pred CCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCC
Q 047861 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDL 293 (368)
Q Consensus 214 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 293 (368)
..+.|+++|+++|.++... + +..-.++++.|+++.|.+. .+ ..++.+++|+.|++++|.++. +..+-..+-++
T Consensus 282 TWq~LtelDLS~N~I~~iD-E---SvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNI 354 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQID-E---SVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNI 354 (490)
T ss_pred hHhhhhhccccccchhhhh-h---hhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHh-hhhhHhhhcCE
Confidence 3466777777777765322 2 4556677777888877775 22 236677778888888777754 33344456677
Q ss_pred CEEEccCCcccccCCcccccCCCCCEEecCCCcCccc-chhhHhhhcccccccccEEEccCCccee
Q 047861 294 EFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD-LSQVLDIFSACGAYALESLVLRSCQFSG 358 (368)
Q Consensus 294 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~l~~n~l~~ 358 (368)
++|.+++|.+. ....+.++.+|..||+++|++... -...++++| .|+.+.+.+|.+.+
T Consensus 355 KtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-----CLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 355 KTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLP-----CLETLRLTGNPLAG 413 (490)
T ss_pred eeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhccccccc-----HHHHHhhcCCCccc
Confidence 77777777664 234466677777777777777642 234566666 77777777777764
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=1.1e-10 Score=108.21 Aligned_cols=198 Identities=32% Similarity=0.408 Sum_probs=131.0
Q ss_pred EEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCC-CCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEc
Q 047861 121 YLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGL-SLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNL 199 (368)
Q Consensus 121 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 199 (368)
.+++..+.+... ...+..++.++.|++.++.+..++.. ...+ ++|+.|++++|.+...+. .+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~--~~~~~~nL~~L~l~~N~i~~l~~---~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPL--IGLLKSNLKELDLSDNKIESLPS---PLRNLPNLKNLDL 170 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccccCccc--cccchhhcccccccccchhhhhh---hhhcccccccccc
Confidence 577777766433 33455567888888888887777653 3444 378888888887766532 3457778888888
Q ss_pred cCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 047861 200 SYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEF 279 (368)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 279 (368)
+.|.+....+. .+..+.|+.|++++|.+..... .......|++|.+++|... ..+..+..+.++..+.+.+|++
T Consensus 171 ~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~----~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 171 SFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPP----EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred CCchhhhhhhh-hhhhhhhhheeccCCccccCch----hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee
Confidence 88877766543 2256777888888887764332 2234445777777777533 3455566677777777777776
Q ss_pred CCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchh
Q 047861 280 NSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333 (368)
Q Consensus 280 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 333 (368)
.. .+..++.+++++.|++++|.++ .++. ++...+++.|+++++.+....+.
T Consensus 245 ~~-~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 245 ED-LPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ee-ccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchh
Confidence 53 2556667777788888877776 3333 67777778888887777765543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=2.1e-11 Score=102.82 Aligned_cols=207 Identities=24% Similarity=0.273 Sum_probs=97.2
Q ss_pred cccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCc--CCcccc
Q 047861 81 VGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNY--LLQVES 158 (368)
Q Consensus 81 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 158 (368)
...+|..+.-+++|..+.++.+.-.. +......-|.|+++.+.+..+... |..+ -...+ -|.++.. ....+.
T Consensus 203 ~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~~~-~~l~-pe~~~--~D~~~~E~~t~~G~~ 276 (490)
T KOG1259|consen 203 PNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQDV-PSLL-PETIL--ADPSGSEPSTSNGSA 276 (490)
T ss_pred ccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccccc-cccc-chhhh--cCccCCCCCccCCce
Confidence 34456666777888888888775442 222233346677777765544322 1100 01111 1111111 111111
Q ss_pred hhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccch
Q 047861 159 FSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSW 238 (368)
Q Consensus 159 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 238 (368)
...+.-...|+++++++|.+..... ...-.|.++.|+++.|++..... +..+++|+.||+++|.++.. .. +
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~G---w 347 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VG---W 347 (490)
T ss_pred EEecchHhhhhhccccccchhhhhh---hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hh---h
Confidence 1112233446666666665554432 33345566666666665544432 44555666666666654421 11 2
Q ss_pred hcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCC-CCChhccCCCCCCEEEccCCccc
Q 047861 239 VFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNS-AIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 239 ~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
-.++-++++|.+++|.+. . ...+..+-+|..|++++|+|.. +-...++++|.|+++.+.+|.+.
T Consensus 348 h~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred HhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 234445555555555543 1 1223444455555555555532 12234455555555555555444
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=5.3e-11 Score=95.57 Aligned_cols=84 Identities=32% Similarity=0.397 Sum_probs=15.7
Q ss_pred CCCCcEEECCCCCCCCCcCCcccC-CCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCC
Q 047861 91 FKHLIHLDLSGNDFQGIQIPKYLG-SLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLE 169 (368)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 169 (368)
..++++|+|++|.++.+ +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.+..+... ....+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~-l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG-LDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH-HHHH-TT--
T ss_pred ccccccccccccccccc---cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc-hHHhCCcCC
Confidence 33455555555555532 2232 345555555555555543 2344455555555555554443211 012344444
Q ss_pred EEeCCCCCCCC
Q 047861 170 HLDLSQADLSK 180 (368)
Q Consensus 170 ~L~l~~~~~~~ 180 (368)
+|++++|++..
T Consensus 92 ~L~L~~N~I~~ 102 (175)
T PF14580_consen 92 ELYLSNNKISD 102 (175)
T ss_dssp EEE-TTS---S
T ss_pred EEECcCCcCCC
Confidence 44444444433
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.10 E-value=3.1e-12 Score=116.22 Aligned_cols=198 Identities=25% Similarity=0.330 Sum_probs=138.3
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLK 219 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (368)
+.--...|++.|.+..++.. +..+..|+.+.++.|.+...+. .+..+..|+.++++.|+++..+.. +.. --|+
T Consensus 74 ltdt~~aDlsrNR~~elp~~--~~~f~~Le~liLy~n~~r~ip~---~i~~L~~lt~l~ls~NqlS~lp~~-lC~-lpLk 146 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEE--ACAFVSLESLILYHNCIRTIPE---AICNLEALTFLDLSSNQLSHLPDG-LCD-LPLK 146 (722)
T ss_pred ccchhhhhccccccccCchH--HHHHHHHHHHHHHhccceecch---hhhhhhHHHHhhhccchhhcCChh-hhc-Ccce
Confidence 34445678888887666644 4555667777777777766654 456777888888888887766543 333 3478
Q ss_pred eEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEcc
Q 047861 220 ALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLR 299 (368)
Q Consensus 220 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 299 (368)
.|-+++|+++.. |. .++....|..|+.+.|.+. .+|..+..+.+|+.|++..|.+.. +|..+. .-.|..||++
T Consensus 147 vli~sNNkl~~l-p~---~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfS 219 (722)
T KOG0532|consen 147 VLIVSNNKLTSL-PE---EIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFS 219 (722)
T ss_pred eEEEecCccccC-Cc---ccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecc
Confidence 888888887743 33 4567778888888888887 677778888888888888888764 666666 4467788888
Q ss_pred CCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCc
Q 047861 300 SNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQ 355 (368)
Q Consensus 300 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 355 (368)
.|++. .+|-.+.++++|++|-|.+|.+.. .|..++...+. .=.++|+..-|+
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkV--HIFKyL~~qA~q 271 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKV--HIFKYLSTQACQ 271 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccce--eeeeeecchhcc
Confidence 88887 788888888888888888888885 44444432211 134667777664
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=7.2e-11 Score=94.81 Aligned_cols=127 Identities=31% Similarity=0.348 Sum_probs=55.1
Q ss_pred cEEEEecCCCCCCCCCCCccccccccccc-CCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLV-DFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
+.++|+|+++ .+.. + +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|.++...+.....
T Consensus 20 ~~~~L~L~~n--------~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 20 KLRELNLRGN--------QIST-I-ENLGATLDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH
T ss_pred cccccccccc--------cccc-c-cchhhhhcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHh
Confidence 5688999994 3433 1 2344 578999999999999854 45778999999999999999764322246
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCch-hhhhcCCCCCCCEEEcc
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATD-WLLVTNSLSSLKVLNLS 200 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~ 200 (368)
+++|++|++++|.+........+..+++|+.|++.+|.+..... -.+.+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 89999999999999888877778889999999999888765532 23344556677666643
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=3.2e-10 Score=105.19 Aligned_cols=199 Identities=37% Similarity=0.481 Sum_probs=154.0
Q ss_pred EEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCC-CCCEEeCCCCcCCcccchhhhcCCCCCCEEeCC
Q 047861 96 HLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLS-NLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLS 174 (368)
Q Consensus 96 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 174 (368)
.+++..+.+.. ....+..++.++.|++.++.++.. +....... +|+.|++++|.+...+. .+..+++|+.|+++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~l~~--~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIESLPS--PLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhhhhh--hhhccccccccccC
Confidence 57777777632 334456668899999999999877 55666664 99999999999887742 27899999999999
Q ss_pred CCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCc
Q 047861 175 QADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQ 254 (368)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 254 (368)
.|.+...+.. ....+.|+.|++++|.+...+.. ......|+++.+++|.+... +. .+.++.++..+.+.+|+
T Consensus 172 ~N~l~~l~~~---~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~-~~---~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 172 FNDLSDLPKL---LSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIEL-LS---SLSNLKNLSGLELSNNK 243 (394)
T ss_pred Cchhhhhhhh---hhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceec-ch---hhhhcccccccccCCce
Confidence 9999887642 22788999999999999887653 23456699999999953322 22 56778888888888888
Q ss_pred CCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcc
Q 047861 255 FQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTS 310 (368)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 310 (368)
+. ..+..+..++.+++|++++|.++.. +. ++...+++.|+++++.+....+..
T Consensus 244 ~~-~~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 244 LE-DLPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ee-eccchhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 76 4467788889999999999999764 33 788999999999999888655543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=6e-12 Score=114.40 Aligned_cols=200 Identities=29% Similarity=0.326 Sum_probs=155.9
Q ss_pred EeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccC
Q 047861 146 LDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQ 225 (368)
Q Consensus 146 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 225 (368)
|.|++-.+...+...+-..+.--...+++.|++...+. ....+..|+.+.+..|.+... +..+.++..|+.++|+.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~---~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPE---EACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSS 130 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCch---HHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhcc
Confidence 33444444444433333455556677888998887754 223456677788888877655 45678889999999999
Q ss_pred CCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccc
Q 047861 226 NQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQG 305 (368)
Q Consensus 226 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 305 (368)
|++.-... .+..+ -|+.|-+++|+++ .+|..++..+.|..|+.+.|.+.. +|..++.+.+|+.|.+..|++.
T Consensus 131 NqlS~lp~----~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~- 202 (722)
T KOG0532|consen 131 NQLSHLPD----GLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLE- 202 (722)
T ss_pred chhhcCCh----hhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhh-
Confidence 99874333 34444 4899999999998 889889988999999999999864 7888999999999999999998
Q ss_pred cCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCcccc
Q 047861 306 KIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLG 365 (368)
Q Consensus 306 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (368)
.+|.++..+ .|..||++.|+++ .+|..|.++. .|++|-|.+|.+. .-|.++|
T Consensus 203 ~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~-----~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMR-----HLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred hCCHHHhCC-ceeeeecccCcee-ecchhhhhhh-----hheeeeeccCCCC-CChHHHH
Confidence 788888844 5999999999999 5899999999 9999999999998 5666665
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1e-11 Score=104.52 Aligned_cols=181 Identities=26% Similarity=0.241 Sum_probs=87.0
Q ss_pred CCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCc-CCcccchhhhcCCCCCCEE
Q 047861 93 HLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNY-LLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L 171 (368)
.|++|||+...++...+...+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++......
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~l----------- 254 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQL----------- 254 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHH-----------
Confidence 355566665555543334444555566666666666655555555555666666665554 22222222
Q ss_pred eCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCC-Cc-cCCCCCCeEEccCCCCCCccccccchhcCCCCccEEE
Q 047861 172 DLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPS-SS-ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFD 249 (368)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 249 (368)
.+.++..|.+|++++|.+...... .. .--++|+.|++++++-.-....+..-...+++|..|+
T Consensus 255 ---------------l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 255 ---------------LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ---------------HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 334455555555555543321110 00 0113455555555432111111111334566666666
Q ss_pred ccCCcC-CCCCCccccCCCCCCEEeCCCCcCCCCCCh---hccCCCCCCEEEccCC
Q 047861 250 LSGNQF-QGKIPIGLGNLTFLRHLDLSDNEFNSAIPG---WLSKLNDLEFLSLRSN 301 (368)
Q Consensus 250 l~~n~l-~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n 301 (368)
+++|.. +...-..+..++.|++|.++.|.. .+|. .+...|.|.+|++.++
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 666542 222223445566666666666642 2222 3345566777766655
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=7.1e-10 Score=110.56 Aligned_cols=131 Identities=30% Similarity=0.354 Sum_probs=91.3
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
.++++-+.++.. .+....+..|..++.|+.|||++|.-.+ .+|..++.+-+|++|+++++.+... |..+.++
T Consensus 546 ~L~tLll~~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~~L-P~~l~~L 617 (889)
T KOG4658|consen 546 KLRTLLLQRNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGISHL-PSGLGNL 617 (889)
T ss_pred ccceEEEeecch------hhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcccc-chHHHHH
Confidence 466666655210 0222223347789999999999875444 5999999999999999999999855 8899999
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEcc
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLS 200 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 200 (368)
..|.+|++..+...... ......+++|++|.+..............+..+.+|+.+...
T Consensus 618 k~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 618 KKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred Hhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 99999999988744433 223566999999998776533333333344455555555553
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.2e-11 Score=102.52 Aligned_cols=184 Identities=24% Similarity=0.162 Sum_probs=119.3
Q ss_pred CCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCC-CccCCC-CCccCCCCCC
Q 047861 142 NLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCE-LHHFPP-SSSANFSSLK 219 (368)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~ 219 (368)
+|++||++...++.......+..+.+|+.|.+.++++.+. +...+....+|+.|+++.+. ++.... -.+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~--I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP--IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH--HHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3555555555444433333456666677777766666543 33455677888888887662 332211 1345789999
Q ss_pred eEEccCCCCCCccccccchhcC-CCCccEEEccCCcCC---CCCCccccCCCCCCEEeCCCCc-CCCCCChhccCCCCCC
Q 047861 220 ALDLSQNQFNNSLFQFGSWVFG-LHNLVFFDLSGNQFQ---GKIPIGLGNLTFLRHLDLSDNE-FNSAIPGWLSKLNDLE 294 (368)
Q Consensus 220 ~L~l~~n~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~ 294 (368)
+|++++|.++...... .+.. -++|+.|+++++.-. ..+..-...+|+|.+|||++|. ++......+..++.|+
T Consensus 264 ~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 9999999776433221 2222 357999999997422 1222334578999999999984 4555556778899999
Q ss_pred EEEccCCccc-ccCCcccccCCCCCEEecCCCcCcc
Q 047861 295 FLSLRSNSLQ-GKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 295 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
+|.++.|... .+..-.+...|.|.+|++-++--.+
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence 9999999653 1222346778999999999875544
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.90 E-value=1.5e-10 Score=107.65 Aligned_cols=196 Identities=35% Similarity=0.414 Sum_probs=107.3
Q ss_pred CCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCC
Q 047861 90 DFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLE 169 (368)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 169 (368)
.+..++.+.++.|.+.. .-..+..+.+|..+++.+|++..+. ..+..+++|++|++++|.+..+.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccccc---hhhccchh
Confidence 44555666666666653 2344566677777777777766552 225566777777777777666554 45555577
Q ss_pred EEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCC-CCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEE
Q 047861 170 HLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPP-SSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFF 248 (368)
Q Consensus 170 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 248 (368)
.|++.+|.+..... +..++.|+.+++++|.+..... . ...+.+++.+++.+|.+.... .+.....+..+
T Consensus 144 ~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-----~~~~~~~l~~~ 213 (414)
T KOG0531|consen 144 ELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-----GLDLLKKLVLL 213 (414)
T ss_pred hheeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-----chHHHHHHHHh
Confidence 77777777666542 2336667777777776665544 2 345566777777776654221 12223333334
Q ss_pred EccCCcCCCCCCccccCCC--CCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc
Q 047861 249 DLSGNQFQGKIPIGLGNLT--FLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 249 ~l~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
++..|.+...-+ +..+. .|+.+++++|.+.. .+..+..+..+..|++.++++.
T Consensus 214 ~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 214 SLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred hcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccc
Confidence 555554442111 11112 25566666665542 2133445555566666555544
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=5.1e-11 Score=104.67 Aligned_cols=309 Identities=22% Similarity=0.188 Sum_probs=183.2
Q ss_pred CCCCCCCCCCCCCcccccEEecCC----------------CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEE
Q 047861 35 SRLASWNIGDEDCCAWGGVVCNNF----------------TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLD 98 (368)
Q Consensus 35 ~~~~~w~~~~~~~c~w~gv~c~~~----------------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 98 (368)
..+..|+.-+-|...|..+.-.+. .++++++.+.|...... ..+-..-.+++++++|+
T Consensus 97 ~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~------sslrt~~~~CpnIehL~ 170 (483)
T KOG4341|consen 97 QCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGD------SSLRTFASNCPNIEHLA 170 (483)
T ss_pred HHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCc------chhhHHhhhCCchhhhh
Confidence 345567754556666655533211 25667777777421111 11112335789999999
Q ss_pred CCCCC-CCCCcCCcccCCCCCCCEEeCCCC-cccCCcchhc-CCCCCCCEEeCCCCcC-CcccchhhhcCCCCCCEEeCC
Q 047861 99 LSGND-FQGIQIPKYLGSLKNLRYLNLSRA-NFAGVTPYQL-GSLSNLQYLDLSQNYL-LQVESFSWLSGLSLLEHLDLS 174 (368)
Q Consensus 99 l~~~~-~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~l-~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~ 174 (368)
+.++. ++.......-..+++|++|++..| .++...-..+ ..+++|++|+++.|+. ..-....+...+..++.+...
T Consensus 171 l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k 250 (483)
T KOG4341|consen 171 LYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK 250 (483)
T ss_pred hhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc
Confidence 98884 444333333456888999999885 5665544433 4689999999999873 333333445667777777766
Q ss_pred CCCCCCCchhhhhcCCCCCCCEEEccCCC-CccCCCC-CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccC
Q 047861 175 QADLSKATDWLLVTNSLSSLKVLNLSYCE-LHHFPPS-SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSG 252 (368)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 252 (368)
+|.-.....+...-..+..+.++++..+. +++.... .-..+..|+.++.+++.-. ....+..--.+..+|++|.+..
T Consensus 251 GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~-~d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 251 GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDI-TDEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCC-chHHHHHHhcCCCceEEEeccc
Confidence 66555555454455566666677765552 3322211 1124677888888776432 1111122334678899999988
Q ss_pred CcC-CCCCCccc-cCCCCCCEEeCCCCcCCCC--CChhccCCCCCCEEEccCCcc-cccC----CcccccCCCCCEEecC
Q 047861 253 NQF-QGKIPIGL-GNLTFLRHLDLSDNEFNSA--IPGWLSKLNDLEFLSLRSNSL-QGKI----PTSFVRLCKLTSIDLS 323 (368)
Q Consensus 253 n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l-~~~~----~~~l~~l~~L~~L~l~ 323 (368)
++. +..--..+ .+++.|+.+++..+..... +...=.+++.|+.+.+++|.. ++.- ...-..+..|..+.++
T Consensus 330 c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 330 CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 863 32211222 3467888888888854321 222224678899999988854 3321 2223456778888888
Q ss_pred CCcCcc-cchhhHhhhcccccccccEEEccCCc
Q 047861 324 FVKLSQ-DLSQVLDIFSACGAYALESLVLRSCQ 355 (368)
Q Consensus 324 ~n~l~~-~~~~~l~~~~~~~~~~L~~L~l~~n~ 355 (368)
+++.+. ...+.+..++ +|+.+++-+|+
T Consensus 410 n~p~i~d~~Le~l~~c~-----~Leri~l~~~q 437 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICR-----NLERIELIDCQ 437 (483)
T ss_pred CCCCchHHHHHHHhhCc-----ccceeeeechh
Confidence 887543 3445555556 88888888874
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=9.4e-10 Score=109.70 Aligned_cols=109 Identities=30% Similarity=0.325 Sum_probs=84.3
Q ss_pred CCCCCcEEECCCCC--CCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCC
Q 047861 90 DFKHLIHLDLSGND--FQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSL 167 (368)
Q Consensus 90 ~l~~L~~L~l~~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 167 (368)
.++.|++|-+.+|. +... ...+|..++.|+.|||++|.--+..|..++.+-+|++|+++++.+...|.. +.++..
T Consensus 543 ~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~--l~~Lk~ 619 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG--LGNLKK 619 (889)
T ss_pred CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH--HHHHHh
Confidence 45578898888885 4432 345577899999999998876677799999999999999999998876655 889999
Q ss_pred CCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCC
Q 047861 168 LEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCE 203 (368)
Q Consensus 168 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (368)
|.+|++..+...... +.....+.+|++|.+....
T Consensus 620 L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hheeccccccccccc--cchhhhcccccEEEeeccc
Confidence 999999877654332 2244568999999886654
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.3e-09 Score=69.52 Aligned_cols=58 Identities=31% Similarity=0.339 Sum_probs=23.6
Q ss_pred CCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCc
Q 047861 293 LEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQ 355 (368)
Q Consensus 293 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 355 (368)
|++|++++|+++..-+..+..+++|++|++++|.++...+..+..++ +|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-----~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-----NLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-----TESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-----CCCEEeCcCCc
Confidence 34444444444422223334444444444444444433333334333 44444444443
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=3.1e-09 Score=89.72 Aligned_cols=111 Identities=21% Similarity=0.181 Sum_probs=64.3
Q ss_pred CCCEEeCCCCcCCcccchhhh-cCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCe
Q 047861 142 NLQYLDLSQNYLLQVESFSWL-SGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKA 220 (368)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (368)
.++.+.+-++.+........+ ...+.++.+++.+|.++....+...+..+|.|+.|+++.|++...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 444444555554444443322 3455667777777777666666666677777777777777665544332234566777
Q ss_pred EEccCCCCCCccccccchhcCCCCccEEEccCCc
Q 047861 221 LDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQ 254 (368)
Q Consensus 221 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 254 (368)
|-|.+..+.-.... ..+..+++++.|.++.|.
T Consensus 126 lVLNgT~L~w~~~~--s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 126 LVLNGTGLSWTQST--SSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEcCCCCChhhhh--hhhhcchhhhhhhhccch
Confidence 77776655432211 145566667777777763
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.75 E-value=7.2e-09 Score=68.43 Aligned_cols=61 Identities=38% Similarity=0.482 Sum_probs=56.1
Q ss_pred CCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcC
Q 047861 267 TFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKL 327 (368)
Q Consensus 267 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 327 (368)
|+|++|++++|+++...+..+..+++|++|++++|.+....+..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999987778899999999999999999977788999999999999999975
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.74 E-value=1.7e-09 Score=90.13 Aligned_cols=217 Identities=23% Similarity=0.170 Sum_probs=117.0
Q ss_pred ccCCCCCcEEECCCCCCCCCc---CCcccCCCCCCCEEeCCCCcc---cCCcc-------hhcCCCCCCCEEeCCCCcCC
Q 047861 88 LVDFKHLIHLDLSGNDFQGIQ---IPKYLGSLKNLRYLNLSRANF---AGVTP-------YQLGSLSNLQYLDLSQNYLL 154 (368)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~---~~~~~-------~~l~~l~~L~~L~l~~~~~~ 154 (368)
+..+..++.++|++|.|.... +...+.+-.+|+..++++-.. ...++ ..+.+||+|+.+++|+|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 445788999999999886531 233455567888888876421 12222 34567899999999999865
Q ss_pred cccc---hhhhcCCCCCCEEeCCCCCCCCCch--hh---------hhcCCCCCCCEEEccCCCCccCCCC----CccCCC
Q 047861 155 QVES---FSWLSGLSLLEHLDLSQADLSKATD--WL---------LVTNSLSSLKVLNLSYCELHHFPPS----SSANFS 216 (368)
Q Consensus 155 ~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~--~~---------~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~ 216 (368)
.... ..+++.-+.|.+|.+.+|.+..... +. .....-|.|+.+....|++..-+.. .+..-.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 4332 3457777888888888887766521 11 1123345566666666655433221 111113
Q ss_pred CCCeEEccCCCCCCcccccc--chhcCCCCccEEEccCCcCCCCC----CccccCCCCCCEEeCCCCcCCCCCChhc---
Q 047861 217 SLKALDLSQNQFNNSLFQFG--SWVFGLHNLVFFDLSGNQFQGKI----PIGLGNLTFLRHLDLSDNEFNSAIPGWL--- 287 (368)
Q Consensus 217 ~L~~L~l~~n~l~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~l--- 287 (368)
.|+++.+..|.|........ ..+..+.+|+.|++.+|.++... ...+...+.|+.|.+.+|-++......+
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 55666666665543321110 02234455566666666554221 1222334445555555555543332221
Q ss_pred ---cCCCCCCEEEccCCccc
Q 047861 288 ---SKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 288 ---~~l~~L~~L~l~~n~l~ 304 (368)
...|+|+.|...+|...
T Consensus 266 f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 266 FNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhhhcCCCccccccchhhhc
Confidence 12355555555555443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.71 E-value=2.6e-09 Score=99.49 Aligned_cols=227 Identities=29% Similarity=0.286 Sum_probs=153.6
Q ss_pred ccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCC
Q 047861 86 LSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGL 165 (368)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 165 (368)
..+..+..|+.|++.+|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.+..+.. +..+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~~~---~~~l 161 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDISG---LESL 161 (414)
T ss_pred cccccccceeeeeccccchhhc--ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhccC---Cccc
Confidence 3467889999999999999853 34377899999999999999876 346677789999999999888766 5558
Q ss_pred CCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCC--
Q 047861 166 SLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLH-- 243 (368)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-- 243 (368)
+.|+.+++++|.+...... . ...+.+++.+.+.+|.+..... +..+..+..+++..|.++.... +....
T Consensus 162 ~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~-----l~~~~~~ 232 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG-----LNELVML 232 (414)
T ss_pred hhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC-----cccchhH
Confidence 9999999999998877531 0 3678888889999887655432 2233445555777776653221 11222
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccccc---CCc-ccccCCCCCE
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGK---IPT-SFVRLCKLTS 319 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~-~l~~l~~L~~ 319 (368)
.|+.+++.+|.+. ..+..+..+..+..+++.++.+... ..+...+.+..+....+.+... ... .....+.+..
T Consensus 233 ~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (414)
T KOG0531|consen 233 HLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVT 309 (414)
T ss_pred HHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccc
Confidence 2778888888776 3334556677788888888776542 2334445566666666655421 111 1445666777
Q ss_pred EecCCCcCcccc
Q 047861 320 IDLSFVKLSQDL 331 (368)
Q Consensus 320 L~l~~n~l~~~~ 331 (368)
+.+.++......
T Consensus 310 ~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 310 LTLELNPIRKIS 321 (414)
T ss_pred cccccCcccccc
Confidence 777777666533
No 48
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.70 E-value=2.5e-08 Score=60.34 Aligned_cols=40 Identities=48% Similarity=1.025 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhCC-CCCCCCCCCCCCC-CCCcccccEEec
Q 047861 17 DSEREALLELKQDLK-DPSSRLASWNIGD-EDCCAWGGVVCN 56 (368)
Q Consensus 17 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~~-~~~c~w~gv~c~ 56 (368)
..|++||++||.++. +|...+.+|+... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999996 6778899999743 799999999994
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=8.2e-09 Score=87.23 Aligned_cols=240 Identities=19% Similarity=0.127 Sum_probs=146.2
Q ss_pred ccccccccccCCCCCcEEECCCCCCCCCcCCccc-CCCCCCCEEeCCCCcccC--CcchhcCCCCCCCEEeCCCCcCCcc
Q 047861 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYL-GSLKNLRYLNLSRANFAG--VTPYQLGSLSNLQYLDLSQNYLLQV 156 (368)
Q Consensus 80 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~ 156 (368)
..|..+..++....++.+.+.++.+........+ ..+..++.++|.+|.++. .+..-+.++|+|++|++++|.+.+.
T Consensus 33 ~~g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 33 SAGLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred ccccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 3444455555566667777777766543222222 346788899999998874 3344557899999999999986554
Q ss_pred cchhhh-cCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCC--CCccCC-CCCCeEEccCCCCCCcc
Q 047861 157 ESFSWL-SGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPP--SSSANF-SSLKALDLSQNQFNNSL 232 (368)
Q Consensus 157 ~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~-~~L~~L~l~~n~l~~~~ 232 (368)
... + ....+|+.|.+.+..+.-. .....+..+|.+++|.++.|.+..... ...... +.++++.+..|...-..
T Consensus 113 I~~--lp~p~~nl~~lVLNgT~L~w~-~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~ 189 (418)
T KOG2982|consen 113 IKS--LPLPLKNLRVLVLNGTGLSWT-QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL 189 (418)
T ss_pred ccc--CcccccceEEEEEcCCCCChh-hhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH
Confidence 322 2 3556889998888776433 122355678888899888885443211 111111 24555555555332100
Q ss_pred ccccchhcCCCCccEEEccCCcCCCC-CCccccCCCCCCEEeCCCCcCCCC-CChhccCCCCCCEEEccCCcccccCCc-
Q 047861 233 FQFGSWVFGLHNLVFFDLSGNQFQGK-IPIGLGNLTFLRHLDLSDNEFNSA-IPGWLSKLNDLEFLSLRSNSLQGKIPT- 309 (368)
Q Consensus 233 ~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~- 309 (368)
.......-++++..+.+..|.+... .......+|.+-.|+|+.+++.+. ....+..++.|..|.++++.+.+.+..
T Consensus 190 -~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 190 -NKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred -HHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC
Confidence 0001223456777777877766532 223344567777888888888652 335677889999999999877644322
Q ss_pred -----ccccCCCCCEEecC
Q 047861 310 -----SFVRLCKLTSIDLS 323 (368)
Q Consensus 310 -----~l~~l~~L~~L~l~ 323 (368)
.++.+++++.|+=+
T Consensus 269 err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 269 ERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cceEEEEeeccceEEecCc
Confidence 35677777777644
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.58 E-value=1.6e-08 Score=84.47 Aligned_cols=238 Identities=16% Similarity=0.079 Sum_probs=159.1
Q ss_pred CCcEEEEecCCCCCCCCCCCccccc----ccccccCCCCCcEEECCCCCCCC--CcC-------CcccCCCCCCCEEeCC
Q 047861 59 TGHVLQLNLGNPNPNNGTGSKLVGK----INLSLVDFKHLIHLDLSGNDFQG--IQI-------PKYLGSLKNLRYLNLS 125 (368)
Q Consensus 59 ~~~v~~l~l~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~--~~~-------~~~l~~l~~L~~L~l~ 125 (368)
...++++||+|| .+... +...+.+-.+|+..+++.-...- ..+ ...+-.||+|+..+|+
T Consensus 29 ~d~~~evdLSGN--------tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LS 100 (388)
T COG5238 29 MDELVEVDLSGN--------TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLS 100 (388)
T ss_pred hcceeEEeccCC--------cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecc
Confidence 356899999995 34333 23345566788888887642210 012 2345678999999999
Q ss_pred CCcccCCcch----hcCCCCCCCEEeCCCCcCCcccchh------------hhcCCCCCCEEeCCCCCCCCCc--hhhhh
Q 047861 126 RANFAGVTPY----QLGSLSNLQYLDLSQNYLLQVESFS------------WLSGLSLLEHLDLSQADLSKAT--DWLLV 187 (368)
Q Consensus 126 ~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~------------~~~~l~~L~~L~l~~~~~~~~~--~~~~~ 187 (368)
+|.|....|. .+++-..|++|.+++|.+-++.... -...-|.|+.+....|++...+ .+...
T Consensus 101 DNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 101 DNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred ccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 9988755554 4567789999999999876654322 1345588999999999987763 34455
Q ss_pred cCCCCCCCEEEccCCCCccCCC-----CCccCCCCCCeEEccCCCCCCcccc-ccchhcCCCCccEEEccCCcCCCCCCc
Q 047861 188 TNSLSSLKVLNLSYCELHHFPP-----SSSANFSSLKALDLSQNQFNNSLFQ-FGSWVFGLHNLVFFDLSGNQFQGKIPI 261 (368)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~ 261 (368)
+.....|+.+.+..|.+..... ..+..+++|+.||+++|.++-.... ++..+..++.|+.|.+.+|-++.....
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 5666899999999998765432 2234578999999999988754332 223566788899999999988754333
Q ss_pred cc------cCCCCCCEEeCCCCcCCCCCChhc-------cCCCCCCEEEccCCccc
Q 047861 262 GL------GNLTFLRHLDLSDNEFNSAIPGWL-------SKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 262 ~l------~~l~~L~~L~L~~n~l~~~~~~~l-------~~l~~L~~L~l~~n~l~ 304 (368)
.+ ...|+|..|...+|.+.+.+...+ ..+|-|..|.+.+|.+.
T Consensus 261 ~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 261 SVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 22 235889999999987655322111 23455666666666554
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.45 E-value=5.9e-09 Score=91.92 Aligned_cols=263 Identities=20% Similarity=0.167 Sum_probs=166.8
Q ss_pred CCCcEEECCCCCCC-CCcCCcccCCCCCCCEEeCCCCc-ccCCcchhc-CCCCCCCEEeCCCCc-CCcccchhhhcCCCC
Q 047861 92 KHLIHLDLSGNDFQ-GIQIPKYLGSLKNLRYLNLSRAN-FAGVTPYQL-GSLSNLQYLDLSQNY-LLQVESFSWLSGLSL 167 (368)
Q Consensus 92 ~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~ 167 (368)
..|+.|.++++.-. ...+.....+++++++|.+.+|. ++...-..+ ..+++|++|++..|. ++..........+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46888999987432 22345566788999999999884 444333333 468999999999865 343333334567899
Q ss_pred CCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccC--CCCCccCCCCCCeEEccCC-CCCCccccccchhcCCCC
Q 047861 168 LEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHF--PPSSSANFSSLKALDLSQN-QFNNSLFQFGSWVFGLHN 244 (368)
Q Consensus 168 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~ 244 (368)
|++|+++.+.......+......+..++.+...+|.=.+. ....-..+..+..+++..+ .+++.... ..-..+..
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--LIACGCHA 295 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--HHhhhhhH
Confidence 9999998776543322333445666677666665421110 0011123344566666555 34443211 13346778
Q ss_pred ccEEEccCCcCCCCCC--ccccCCCCCCEEeCCCCc-CCCCCChhc-cCCCCCCEEEccCCccc--ccCCcccccCCCCC
Q 047861 245 LVFFDLSGNQFQGKIP--IGLGNLTFLRHLDLSDNE-FNSAIPGWL-SKLNDLEFLSLRSNSLQ--GKIPTSFVRLCKLT 318 (368)
Q Consensus 245 L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~ 318 (368)
|+.|..+++...+..+ .-..+.++|+.+-++.|+ +++.....+ .+++.|+.+++..+... +.+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 9999999986533221 122467899999999995 554433344 35789999999998443 33555556899999
Q ss_pred EEecCCCc-CcccchhhHhhhcccccccccEEEccCCcce
Q 047861 319 SIDLSFVK-LSQDLSQVLDIFSACGAYALESLVLRSCQFS 357 (368)
Q Consensus 319 ~L~l~~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~ 357 (368)
++.+++|. ++++....+.... ++...|+.+.+++|..+
T Consensus 376 ~lslshce~itD~gi~~l~~~~-c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSS-CSLEGLEVLELDNCPLI 414 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhcc-ccccccceeeecCCCCc
Confidence 99999996 4555444444433 56668999999999754
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.32 E-value=2.7e-08 Score=74.55 Aligned_cols=108 Identities=28% Similarity=0.292 Sum_probs=68.8
Q ss_pred CCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccc-cCCCCCCEEeCCCCcCCCCCChhccCCCCCCEE
Q 047861 218 LKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGL-GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFL 296 (368)
Q Consensus 218 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 296 (368)
+..++|+.|.+- .++.....+.+...|+..++++|.+. .+|..+ ..++.+++|++++|.+. ++|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 445566665542 22222224455556777777777776 344333 34567777777777775 466677777778888
Q ss_pred EccCCcccccCCcccccCCCCCEEecCCCcCcc
Q 047861 297 SLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 297 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
+++.|.+. ..|..+..+.++-.|+..+|.+..
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE 137 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCcccc
Confidence 88777776 566666667777777777776663
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=1e-08 Score=96.40 Aligned_cols=126 Identities=29% Similarity=0.269 Sum_probs=64.5
Q ss_pred CCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEE
Q 047861 217 SLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFL 296 (368)
Q Consensus 217 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 296 (368)
.|...+++.|++.-.. . ++.-++.++.|+|+.|+++.. +.+..++.|++|||++|.+.- +|..-..-..|+.|
T Consensus 165 ~L~~a~fsyN~L~~mD-~---SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD-E---SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLL 237 (1096)
T ss_pred hHhhhhcchhhHHhHH-H---HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhhheee
Confidence 4455555555554211 1 344455566666666666532 245556666666666666542 22211111236666
Q ss_pred EccCCcccccCCcccccCCCCCEEecCCCcCccc-chhhHhhhcccccccccEEEccCCcc
Q 047861 297 SLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD-LSQVLDIFSACGAYALESLVLRSCQF 356 (368)
Q Consensus 297 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~~~~~~L~~L~l~~n~l 356 (368)
.+.+|.++ ....+.++++|+.||+++|-+.+. -...+..+. .|++|.|.+|.+
T Consensus 238 ~lrnN~l~--tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs-----~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 238 NLRNNALT--TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLS-----SLIVLWLEGNPL 291 (1096)
T ss_pred eecccHHH--hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHH-----HHHHHhhcCCcc
Confidence 66666654 123355666666666666665541 112233344 566666666654
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=6.3e-08 Score=91.23 Aligned_cols=157 Identities=25% Similarity=0.275 Sum_probs=106.2
Q ss_pred hcCCCCCCCEEEccCCCCccCCCCCccCC-CCCCeEEccCCCCCCc---cccccc---hhcCCCCccEEEccCCcCCCCC
Q 047861 187 VTNSLSSLKVLNLSYCELHHFPPSSSANF-SSLKALDLSQNQFNNS---LFQFGS---WVFGLHNLVFFDLSGNQFQGKI 259 (368)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~---~~~~~~---~~~~~~~L~~L~l~~n~l~~~~ 259 (368)
.+..+.+|+.|.+.++.+... ..+..+ ..|++|... |.++.. +..... .-..+-+|.+.+.++|.+. .+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m 179 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM 179 (1096)
T ss_pred eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence 344567888888888876541 111111 234444222 221100 000000 0112346888899999987 66
Q ss_pred CccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCc-ccccCCCCCEEecCCCcCcccchhhHhhh
Q 047861 260 PIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPT-SFVRLCKLTSIDLSFVKLSQDLSQVLDIF 338 (368)
Q Consensus 260 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 338 (368)
..++.-++.|+.|+|++|++++. ..+..+++|++|||++|.+. .+|. ....|. |+.|++++|.++. ...+.++
T Consensus 180 D~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~L 253 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT--LRGIENL 253 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh--hhhHHhh
Confidence 77788889999999999999864 47888999999999999998 5554 334444 9999999999985 2346677
Q ss_pred cccccccccEEEccCCccee
Q 047861 339 SACGAYALESLVLRSCQFSG 358 (368)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~ 358 (368)
. +|+-||+++|-+.+
T Consensus 254 k-----sL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 254 K-----SLYGLDLSYNLLSE 268 (1096)
T ss_pred h-----hhhccchhHhhhhc
Confidence 7 99999999998764
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=1.5e-07 Score=70.58 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcc
Q 047861 242 LHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303 (368)
Q Consensus 242 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 303 (368)
++.++.|++++|.++ .+|..+..++.|+.++++.|.+.. .|..+..+.++-.|+..+|..
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCcc
Confidence 334444444444444 444444444455555555444432 233333344444444444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=3.7e-06 Score=82.29 Aligned_cols=154 Identities=25% Similarity=0.305 Sum_probs=96.0
Q ss_pred CCCcEEECCCCCCCCCcCCcccC-CCCCCCEEeCCCCcccCC-cchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCC
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLG-SLKNLRYLNLSRANFAGV-TPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLE 169 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 169 (368)
.+|++|+++|...-...-+..++ .+|.|++|.+.+-.+... ......++|+|..||+|++.+..... ++.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~G---IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSG---ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHH---HhccccHH
Confidence 57888888876432222333343 468888888887766532 22334578888888888888776633 67788888
Q ss_pred EEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCC------CCCccCCCCCCeEEccCCCCCCccccccchhcCCC
Q 047861 170 HLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFP------PSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLH 243 (368)
Q Consensus 170 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 243 (368)
.|.+.+-.+....++. .+-.+++|+.||+|........ .+.-..+++|+.||.+++.+++...+. .+...+
T Consensus 199 ~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~--ll~sH~ 275 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE--LLNSHP 275 (699)
T ss_pred HHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHH--HHHhCc
Confidence 8877766665543322 4456888888888776543322 112234688888988888776543331 233455
Q ss_pred CccEEEcc
Q 047861 244 NLVFFDLS 251 (368)
Q Consensus 244 ~L~~L~l~ 251 (368)
+|+.+..-
T Consensus 276 ~L~~i~~~ 283 (699)
T KOG3665|consen 276 NLQQIAAL 283 (699)
T ss_pred cHhhhhhh
Confidence 55555443
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.4e-06 Score=49.58 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=14.7
Q ss_pred CCCEEEccCCcccccCCcccccCCCCCEEecCCCcCc
Q 047861 292 DLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLS 328 (368)
Q Consensus 292 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 328 (368)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444444
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=4.6e-06 Score=81.64 Aligned_cols=156 Identities=24% Similarity=0.238 Sum_probs=104.3
Q ss_pred CCCCCCEEEccCCCCcc-CCCCCc-cCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCC
Q 047861 190 SLSSLKVLNLSYCELHH-FPPSSS-ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLT 267 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~~-~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 267 (368)
.-.+|+.|++++...-. ..+..+ ..+|+|+.|.+.+-.+.... +.....++++|..||+++.+++.. ..++.++
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk 195 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL--SGISRLK 195 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc--HHHhccc
Confidence 34678889998754321 111112 24789999999887765432 222566888999999999988733 5677889
Q ss_pred CCCEEeCCCCcCCC-CCChhccCCCCCCEEEccCCcccccC--C----cccccCCCCCEEecCCCcCcccchhhHhhhcc
Q 047861 268 FLRHLDLSDNEFNS-AIPGWLSKLNDLEFLSLRSNSLQGKI--P----TSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSA 340 (368)
Q Consensus 268 ~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 340 (368)
+|+.|.+.+-.+.. .....+..+++|+.||+|.......- . +.-..+|+|+.||.+++.+.+.+.+.+..-.
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH- 274 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSH- 274 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhC-
Confidence 99999888877754 33446678899999999987543211 1 1123478999999999888887665554421
Q ss_pred cccccccEEEccC
Q 047861 341 CGAYALESLVLRS 353 (368)
Q Consensus 341 ~~~~~L~~L~l~~ 353 (368)
++|+.+-+-+
T Consensus 275 ---~~L~~i~~~~ 284 (699)
T KOG3665|consen 275 ---PNLQQIAALD 284 (699)
T ss_pred ---ccHhhhhhhh
Confidence 2666665443
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=2.5e-05 Score=62.90 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCC
Q 047861 118 NLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLS 179 (368)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 179 (368)
+...++|++|.+... ..+.++++|.+|.+.+|.++.+...- -..+++|+.|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L-~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDL-DTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccch-hhhccccceEEecCcchh
Confidence 344455555544332 23444555555555555544443221 223334444444444443
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.92 E-value=1.6e-05 Score=48.09 Aligned_cols=37 Identities=38% Similarity=0.550 Sum_probs=18.1
Q ss_pred CCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCc
Q 047861 118 NLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQ 155 (368)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (368)
+|++|++++|+++.. |..++++++|++|++++|++..
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCC
Confidence 455555555555543 3345555555555555555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.91 E-value=1.6e-05 Score=63.95 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=55.4
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 171 (368)
.+...+||++|.+... ..+..++.|.+|.+.+|.|+.+.|.--..+++|+.|.+.+|.+.......-+..+|+|++|
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3456677777766532 3456677788888888888777665555677788888888877666554445555555555
Q ss_pred eCCCCCCC
Q 047861 172 DLSQADLS 179 (368)
Q Consensus 172 ~l~~~~~~ 179 (368)
.+-+|.+.
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 55555443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.91 E-value=5.1e-06 Score=69.50 Aligned_cols=116 Identities=25% Similarity=0.230 Sum_probs=77.4
Q ss_pred cccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCC--cccCCcchhcCCCCCCCEEeCCCCcCCcccchh
Q 047861 83 KINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRA--NFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFS 160 (368)
Q Consensus 83 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (368)
.+....-.+..|+.+++.+..++.. ..+-.+++|++|.++.| ++.+..+.....+|+|+++++++|++..+....
T Consensus 34 ~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred Ccccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence 3443444556677777777766532 33456788999999998 666555555566799999999999887766655
Q ss_pred hhcCCCCCCEEeCCCCCCCCCch-hhhhcCCCCCCCEEEccC
Q 047861 161 WLSGLSLLEHLDLSQADLSKATD-WLLVTNSLSSLKVLNLSY 201 (368)
Q Consensus 161 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~ 201 (368)
.+..+.+|..|++.+|....... -...+..+++|++|+-..
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 57778888888888877665521 122334566777665433
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=9.5e-05 Score=67.18 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=43.7
Q ss_pred ccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCc-CCcccchhhhcCCC
Q 047861 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNY-LLQVESFSWLSGLS 166 (368)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~ 166 (368)
+..+++++.|++++|.++ .+|. -..+|++|.+++|.--..+|..+ .++|++|++++|. +... .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL--------P~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL--------PE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc--------cc
Confidence 444677888888888776 3552 23458888887754333334433 2577777777773 3221 13
Q ss_pred CCCEEeCCCCC
Q 047861 167 LLEHLDLSQAD 177 (368)
Q Consensus 167 ~L~~L~l~~~~ 177 (368)
.|+.|++..+.
T Consensus 113 sLe~L~L~~n~ 123 (426)
T PRK15386 113 SVRSLEIKGSA 123 (426)
T ss_pred ccceEEeCCCC
Confidence 46666665444
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.00016 Score=65.80 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=76.7
Q ss_pred cCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCC-CCCchhhhhcCCCCCCCEEEccCC-CCccCCCCCccC
Q 047861 137 LGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADL-SKATDWLLVTNSLSSLKVLNLSYC-ELHHFPPSSSAN 214 (368)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~ 214 (368)
+..+.+++.|++++|.+...+. -.++|++|.+.++.. ...+. . -.++|+.|.+++| .+...
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~---~--LP~nLe~L~Ls~Cs~L~sL------- 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPG---S--IPEGLEKLTVCHCPEISGL------- 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCc---h--hhhhhhheEccCccccccc-------
Confidence 4456889999999987666652 224688888877543 22232 1 1357888888877 33321
Q ss_pred CCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCC--CCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCC
Q 047861 215 FSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQ--GKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLND 292 (368)
Q Consensus 215 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 292 (368)
..+|+.|++..+.... ...+ .++|+.|.+.+++.. ..++.. -.++|++|++++|.... .|..+. .+
T Consensus 111 P~sLe~L~L~~n~~~~-L~~L------PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~S 178 (426)
T PRK15386 111 PESVRSLEIKGSATDS-IKNV------PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ES 178 (426)
T ss_pred ccccceEEeCCCCCcc-cccC------cchHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--cc
Confidence 2457777776554331 1111 125667776543211 011111 12578888888876542 333333 57
Q ss_pred CCEEEccCC
Q 047861 293 LEFLSLRSN 301 (368)
Q Consensus 293 L~~L~l~~n 301 (368)
|+.|.++.+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 888887765
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.56 E-value=9.4e-06 Score=77.36 Aligned_cols=64 Identities=27% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCCCCCEEeCCCCc-CCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCC
Q 047861 139 SLSNLQYLDLSQNY-LLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYC 202 (368)
Q Consensus 139 ~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 202 (368)
.+++|+.|+++.+. +.+.........+++|++|.+..+.-.....+......++.|++|+++++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 34555555555554 33332222222345555555444432122223333344455555555544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=3.1e-06 Score=71.30 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=76.8
Q ss_pred CCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCE
Q 047861 91 FKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEH 170 (368)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 170 (368)
+.++++|++.+|.+.++ ....+++.|+.|.|+-|+|+.. ..+..|.+|++|+|..|.+..+.-..++.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 56778889999988865 3456788999999999888876 346678899999999998888888888889999999
Q ss_pred EeCCCCCCCCC---chhhhhcCCCCCCCEEE
Q 047861 171 LDLSQADLSKA---TDWLLVTNSLSSLKVLN 198 (368)
Q Consensus 171 L~l~~~~~~~~---~~~~~~~~~~~~L~~L~ 198 (368)
|-+..|.-.+. ..-...+..+|+|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88876654332 11122445667777765
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.47 E-value=2.5e-05 Score=74.39 Aligned_cols=221 Identities=22% Similarity=0.141 Sum_probs=126.1
Q ss_pred ccccCCCCCcEEECCCC-CC-CCC--cCCcccCCCCCCCEEeCCCCc-ccCCcchhcC-CCCCCCEEeCCCCc-CCcccc
Q 047861 86 LSLVDFKHLIHLDLSGN-DF-QGI--QIPKYLGSLKNLRYLNLSRAN-FAGVTPYQLG-SLSNLQYLDLSQNY-LLQVES 158 (368)
Q Consensus 86 ~~~~~l~~L~~L~l~~~-~~-~~~--~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~ 158 (368)
.....+++|+.|+++++ .. ... ........+++|+.++++.+. +++..-..++ .+++|++|.+..|. +++...
T Consensus 208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl 287 (482)
T KOG1947|consen 208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGL 287 (482)
T ss_pred HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHH
Confidence 34567889999999873 21 111 012344557889999999887 6655444554 48999999988887 677776
Q ss_pred hhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCC--cccccc
Q 047861 159 FSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNN--SLFQFG 236 (368)
Q Consensus 159 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~ 236 (368)
......++.|++|+++.+.......+......+++++.|.+....- +..++.+.+.+..-.. ....
T Consensus 288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~-- 355 (482)
T KOG1947|consen 288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAE-- 355 (482)
T ss_pred HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhH--
Confidence 6767889999999999887764433444455677777765543221 4445555554432211 1111
Q ss_pred chhcCCCCccEEEccCCcCCCCC-CccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc-ccCCccccc-
Q 047861 237 SWVFGLHNLVFFDLSGNQFQGKI-PIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ-GKIPTSFVR- 313 (368)
Q Consensus 237 ~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~- 313 (368)
.....+++++.+.+..+...... -..+..++.|. ..+. ........++.|+++.+... ...-.....
T Consensus 356 ~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~---------~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 356 LILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLE---------LRLCRSDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred HHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHH---------HHhccCCccceEecccCccccccchHHHhhh
Confidence 14566777777777777633221 13334444441 1111 11111222667777766432 222222222
Q ss_pred CCCCCEEecCCCcCc
Q 047861 314 LCKLTSIDLSFVKLS 328 (368)
Q Consensus 314 l~~L~~L~l~~n~l~ 328 (368)
+..++.+++.++...
T Consensus 426 ~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRVI 440 (482)
T ss_pred hhccccCCccCcccc
Confidence 556666666666543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.43 E-value=6.1e-05 Score=63.18 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=19.2
Q ss_pred CCCCCCEEEccCCCCccC-CCCCccCCCCCCeEEccCCCCC
Q 047861 190 SLSSLKVLNLSYCELHHF-PPSSSANFSSLKALDLSQNQFN 229 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~ 229 (368)
.+++|+.+++++|.+... ....+..+.+|..|++..|..+
T Consensus 89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 345555555555554431 1122333455556666655444
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.32 E-value=0.00011 Score=37.03 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.1
Q ss_pred cccEEEccCCcceeccCccccCC
Q 047861 345 ALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
+|++||+++|+++ .+|++|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4789999999998 899888765
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.20 E-value=0.0012 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=11.8
Q ss_pred CCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccC
Q 047861 190 SLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQ 225 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 225 (368)
.+.+|+.+.+.. .+.......+..+++|+.+.+..
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred CCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 334444444432 23333334444444555555544
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=2e-05 Score=66.53 Aligned_cols=80 Identities=26% Similarity=0.242 Sum_probs=41.7
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCC-CCccCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPP-SSSANFSSL 218 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L 218 (368)
+.+.+.|++++|.+.++.. ..+|+.|+.|.++-|.++.... +..|++|++|++..|.+..... ..+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3455667777776655543 5566666666666666655532 2345555555555554443221 223344444
Q ss_pred CeEEccCC
Q 047861 219 KALDLSQN 226 (368)
Q Consensus 219 ~~L~l~~n 226 (368)
+.|+|..|
T Consensus 91 r~LWL~EN 98 (388)
T KOG2123|consen 91 RTLWLDEN 98 (388)
T ss_pred hhHhhccC
Confidence 44444444
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.02 E-value=0.0026 Score=48.64 Aligned_cols=122 Identities=13% Similarity=0.139 Sum_probs=59.5
Q ss_pred CCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhcc
Q 047861 209 PSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLS 288 (368)
Q Consensus 209 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 288 (368)
...+..+.+|+.+.+.. .+...... .+.++++|+.+.+..+ +.......+..++.++.+.+.+ .+.......+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~---~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGEN---AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TT---TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChh---hccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccc
Confidence 34567777888888874 34433333 5677778888888775 4433445566777788888865 33333344566
Q ss_pred CCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhc
Q 047861 289 KLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFS 339 (368)
Q Consensus 289 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (368)
.+++|+.+.+..+ +...-...+.++ .|+.+.+.. .+.......+..++
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~ 126 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT 126 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence 6788888888665 442334455665 788887765 33333334444443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.36 E-value=3.8e-05 Score=72.10 Aligned_cols=190 Identities=26% Similarity=0.200 Sum_probs=97.1
Q ss_pred CCEEeCCCCcCCcccch---hhhcCCCCCCEEeCCCCCCCCC--chhhhhcCCC-CCCCEEEccCCCCccCCC----CCc
Q 047861 143 LQYLDLSQNYLLQVESF---SWLSGLSLLEHLDLSQADLSKA--TDWLLVTNSL-SSLKVLNLSYCELHHFPP----SSS 212 (368)
Q Consensus 143 L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~ 212 (368)
+..+.+.+|.+...... ..+...+.|..|++++|.+... ......+... ..++.|.+..|.++.... +.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66777888876655433 2345667777788887777643 2222233333 455566666666554332 233
Q ss_pred cCCCCCCeEEccCCCCCCccc-cccchhc----CCCCccEEEccCCcCCCC----CCccccCCCC-CCEEeCCCCcCCCC
Q 047861 213 ANFSSLKALDLSQNQFNNSLF-QFGSWVF----GLHNLVFFDLSGNQFQGK----IPIGLGNLTF-LRHLDLSDNEFNSA 282 (368)
Q Consensus 213 ~~~~~L~~L~l~~n~l~~~~~-~~~~~~~----~~~~L~~L~l~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~~ 282 (368)
.....++.++++.|.+..... .....+. ...++++|++.+|.++.. +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 345667777777766532111 0011122 344566666666655421 1122233333 44566666665433
Q ss_pred CC----hhccCC-CCCCEEEccCCccccc----CCcccccCCCCCEEecCCCcCcccch
Q 047861 283 IP----GWLSKL-NDLEFLSLRSNSLQGK----IPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 283 ~~----~~l~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
.. ..+..+ +.+++++++.|.++.. +...+..+++++.+.+++|.+.+...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 11 122233 4556666666665532 33444555566666666666665433
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.41 E-value=8.3e-05 Score=69.84 Aligned_cols=212 Identities=26% Similarity=0.211 Sum_probs=138.3
Q ss_pred CCCEEeCCCCcccCCcch----hcCCCCCCCEEeCCCCcCCcccchhh---hcCC-CCCCEEeCCCCCCCCC--chhhhh
Q 047861 118 NLRYLNLSRANFAGVTPY----QLGSLSNLQYLDLSQNYLLQVESFSW---LSGL-SLLEHLDLSQADLSKA--TDWLLV 187 (368)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~l-~~L~~L~l~~~~~~~~--~~~~~~ 187 (368)
.+..+.|.+|.+...... .+...+.|+.|++++|.+........ +... ..+++|++..|.+... ..+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 377888888887755443 44578899999999998774433221 2222 4577788888877665 445556
Q ss_pred cCCCCCCCEEEccCCCCccC----CCCC----ccCCCCCCeEEccCCCCCCcccc-ccchhcCCCC-ccEEEccCCcCCC
Q 047861 188 TNSLSSLKVLNLSYCELHHF----PPSS----SANFSSLKALDLSQNQFNNSLFQ-FGSWVFGLHN-LVFFDLSGNQFQG 257 (368)
Q Consensus 188 ~~~~~~L~~L~l~~~~~~~~----~~~~----~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~-L~~L~l~~n~l~~ 257 (368)
+.....++.++++.|.+... .+.. +....++++|.+.++.++..... ....+...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 66688889999998876431 1122 23467889999999988743322 1113444445 7779999998764
Q ss_pred C----CCccccCC-CCCCEEeCCCCcCCCCCC----hhccCCCCCCEEEccCCcccccC----CcccccCCCCCEEecCC
Q 047861 258 K----IPIGLGNL-TFLRHLDLSDNEFNSAIP----GWLSKLNDLEFLSLRSNSLQGKI----PTSFVRLCKLTSIDLSF 324 (368)
Q Consensus 258 ~----~~~~l~~l-~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~ 324 (368)
. ....+..+ ..+++++++.|.+++... ..+..++.++++.+++|.+.+.. ...+.....+..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 3 22334445 678999999999987543 44566789999999999887532 23334445566666665
Q ss_pred CcCcc
Q 047861 325 VKLSQ 329 (368)
Q Consensus 325 n~l~~ 329 (368)
+....
T Consensus 328 ~~~~~ 332 (478)
T KOG4308|consen 328 TGKGT 332 (478)
T ss_pred cCccc
Confidence 54433
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.32 E-value=0.0099 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=8.2
Q ss_pred cccEEEccCCcceeccC
Q 047861 345 ALESLVLRSCQFSGHMT 361 (368)
Q Consensus 345 ~L~~L~l~~n~l~~~~p 361 (368)
+|++|+|++|+++ ++|
T Consensus 2 ~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp T-SEEEETSS--S-SE-
T ss_pred ccCEEECCCCCCC-CCc
Confidence 6777777777765 444
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.02 E-value=0.0092 Score=29.90 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=8.7
Q ss_pred CCEEecCCCcCcccchhh
Q 047861 317 LTSIDLSFVKLSQDLSQV 334 (368)
Q Consensus 317 L~~L~l~~n~l~~~~~~~ 334 (368)
|++|++++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 455555555555 44443
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.003 Score=51.18 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=44.0
Q ss_pred CCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCC-Ccccc-CCCCCCEEeCCCC-cCCCCCChhccCCCCC
Q 047861 217 SLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKI-PIGLG-NLTFLRHLDLSDN-EFNSAIPGWLSKLNDL 293 (368)
Q Consensus 217 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~-~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 293 (368)
.++.+|-++..+.....+ .+..+++++.|.+.+|.-.+.. ...++ -.++|+.|++++| +||+.....+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle---~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE---HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHH---HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 355566666655544444 4556666666666665432110 01111 2356666666666 4565555666666666
Q ss_pred CEEEccCC
Q 047861 294 EFLSLRSN 301 (368)
Q Consensus 294 ~~L~l~~n 301 (368)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 66666543
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.0079 Score=48.82 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=53.6
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCCc-CCCCCChhcc-CCCCCCEEEccCC-cccccCCcccccCCCCCEE
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNE-FNSAIPGWLS-KLNDLEFLSLRSN-SLQGKIPTSFVRLCKLTSI 320 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 320 (368)
.++.++-+++.+....-..+..++.++.|.+.+|. +.+.....++ -.++|+.|++++| +|++.-...+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46677777776665555666677777777777774 2222222222 2467888888877 5665555667777777777
Q ss_pred ecCCCcCc
Q 047861 321 DLSFVKLS 328 (368)
Q Consensus 321 ~l~~n~l~ 328 (368)
.+.+-...
T Consensus 182 ~l~~l~~v 189 (221)
T KOG3864|consen 182 HLYDLPYV 189 (221)
T ss_pred HhcCchhh
Confidence 77654433
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.09 E-value=0.028 Score=28.77 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=7.7
Q ss_pred CCCCEEecCCCcCcccchh
Q 047861 315 CKLTSIDLSFVKLSQDLSQ 333 (368)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~ 333 (368)
++|+.|+|++|.+++..+.
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 3444444444444444333
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.76 E-value=0.017 Score=29.58 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=16.2
Q ss_pred ccccEEEccCCcceeccCcccc
Q 047861 344 YALESLVLRSCQFSGHMTNQLG 365 (368)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p~~~~ 365 (368)
++|++|+|++|+|++.-+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4899999999999987666554
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.32 E-value=0.2 Score=26.03 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=13.7
Q ss_pred cccEEEccCCcceeccCcc
Q 047861 345 ALESLVLRSCQFSGHMTNQ 363 (368)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~ 363 (368)
+|++|+|++|+++ .+|+.
T Consensus 3 ~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 3 NLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCEEECCCCcCC-cCCHH
Confidence 7888888888887 56654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.32 E-value=0.2 Score=26.03 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=13.7
Q ss_pred cccEEEccCCcceeccCcc
Q 047861 345 ALESLVLRSCQFSGHMTNQ 363 (368)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~ 363 (368)
+|++|+|++|+++ .+|+.
T Consensus 3 ~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 3 NLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCEEECCCCcCC-cCCHH
Confidence 7888888888887 56654
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.19 E-value=0.32 Score=25.34 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.4
Q ss_pred cccEEEccCCcceeccCc
Q 047861 345 ALESLVLRSCQFSGHMTN 362 (368)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~ 362 (368)
+|++|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 7888999999988 6886
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.16 E-value=0.57 Score=24.92 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=15.4
Q ss_pred CCCCEEecCCCcCcccchhhHhh
Q 047861 315 CKLTSIDLSFVKLSQDLSQVLDI 337 (368)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~~l~~ 337 (368)
++|++|+|++|.+..+....++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 46777888888777665555443
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.09 E-value=0.016 Score=48.12 Aligned_cols=85 Identities=19% Similarity=0.189 Sum_probs=40.6
Q ss_pred CCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEE
Q 047861 241 GLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSI 320 (368)
Q Consensus 241 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 320 (368)
.....+.|+++.|.+. .+...++.++.+..|+++.|.+. ..|...+....++.+++..|... ..|......++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3334444555544443 22233333444555555555443 23444444444455555544444 455555555566666
Q ss_pred ecCCCcCc
Q 047861 321 DLSFVKLS 328 (368)
Q Consensus 321 ~l~~n~l~ 328 (368)
++.++.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 55555544
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.10 E-value=0.83 Score=43.13 Aligned_cols=69 Identities=20% Similarity=0.134 Sum_probs=39.6
Q ss_pred cCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccC--CCCCCeEEccCCCCCCc
Q 047861 163 SGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSAN--FSSLKALDLSQNQFNNS 231 (368)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ 231 (368)
.+.+.+..+++++|++.....+.......|+|+.|+|++|........++.. ...|++|.+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 4456666777777777666555445556677777777777222111112222 23567777777776543
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.20 E-value=1.8 Score=22.35 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=7.8
Q ss_pred CCCCEEecCCCc-Ccc
Q 047861 315 CKLTSIDLSFVK-LSQ 329 (368)
Q Consensus 315 ~~L~~L~l~~n~-l~~ 329 (368)
++|++|+|++|. +++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 455555555553 443
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=77.27 E-value=15 Score=34.47 Aligned_cols=112 Identities=14% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCC-CCcccc--------CCCCCCEEeCCCCcCCCCCC---
Q 047861 217 SLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGK-IPIGLG--------NLTFLRHLDLSDNEFNSAIP--- 284 (368)
Q Consensus 217 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~--------~l~~L~~L~L~~n~l~~~~~--- 284 (368)
.+++|.+.+|.+.+..-... ....-+..+.+.+....-... .+.... ..--+..+.++.|......-
T Consensus 355 R~q~l~~rdnnldgeg~~vg-k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVG-KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeEeecccccccccccccc-ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 47777777777766554433 344455566666655432100 011000 11235566666665542211
Q ss_pred hhccCCCCCCEEEccCCcccc----cCCcccccCCCCCEEecCCCcCcc
Q 047861 285 GWLSKLNDLEFLSLRSNSLQG----KIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 285 ~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
..+..-+.+.+|++++|.... .+|..+....+++.+..+.|..+.
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 122344667777777775542 345556556666666666665443
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.15 E-value=0.033 Score=46.37 Aligned_cols=91 Identities=22% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhcc
Q 047861 209 PSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLS 288 (368)
Q Consensus 209 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~ 288 (368)
...+......+.||++.|++-.... .++.++.+..|+++.|++. ..|..+.....+..+++..|... ..|...+
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVNLGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred hhhhhccceeeeehhhhhHHHhhcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 3445556777788888776643222 3455667777888887776 67777777777777777777664 5677778
Q ss_pred CCCCCCEEEccCCcccc
Q 047861 289 KLNDLEFLSLRSNSLQG 305 (368)
Q Consensus 289 ~l~~L~~L~l~~n~l~~ 305 (368)
..+.++++++.++.+..
T Consensus 109 k~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFR 125 (326)
T ss_pred ccCCcchhhhccCcchH
Confidence 88888888888877653
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.44 E-value=1.9 Score=40.80 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=31.8
Q ss_pred CCCCCEEeCCCCcCCC--CCChhccCCCCCCEEEccCCcccccCCccccc--CCCCCEEecCCCcCccc
Q 047861 266 LTFLRHLDLSDNEFNS--AIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVR--LCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 266 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~~~ 330 (368)
.+.+..++|++|++.. .+...-...|+|+.|+|++|...-....++.+ ...|++|-+.||++...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 3455566666665532 11112234566777777776221111122222 23466777777776654
No 91
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.48 E-value=3.3 Score=21.61 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=10.7
Q ss_pred cccEEEccCCcce
Q 047861 345 ALESLVLRSCQFS 357 (368)
Q Consensus 345 ~L~~L~l~~n~l~ 357 (368)
+|+.|+++.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 7888888888875
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=27.62 E-value=4.3e+02 Score=25.32 Aligned_cols=233 Identities=19% Similarity=0.088 Sum_probs=112.4
Q ss_pred EEEEecCCCCCCCCCCCccccccccccc---CCCCCcEEECCCCCCCCCcC--CcccCCCCCCCEEeCCCCccc----CC
Q 047861 62 VLQLNLGNPNPNNGTGSKLVGKINLSLV---DFKHLIHLDLSGNDFQGIQI--PKYLGSLKNLRYLNLSRANFA----GV 132 (368)
Q Consensus 62 v~~l~l~~~~~~~~~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~----~~ 132 (368)
.+.+||+. +.....+|..+. .-..+++++.+...+.-... +-..++-.++++.+++.+... ..
T Consensus 216 lteldls~--------n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~E 287 (553)
T KOG4242|consen 216 LTELDLST--------NGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEE 287 (553)
T ss_pred cccccccc--------CCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccc
Confidence 44555555 445555554332 22456777777765542211 122345567888888776543 12
Q ss_pred cchh----cCCCCCCCEEeCCCCcCCcccchhhhcCC-----CCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCC
Q 047861 133 TPYQ----LGSLSNLQYLDLSQNYLLQVESFSWLSGL-----SLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCE 203 (368)
Q Consensus 133 ~~~~----l~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (368)
++.. +..-+++ +|++..+..........+-.+ +.=-++++..|......... ....=..+++|....|.
T Consensus 288 gg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vle-aci~g~R~q~l~~rdnn 365 (553)
T KOG4242|consen 288 GGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLE-ACIFGQRVQVLLQRDNN 365 (553)
T ss_pred cccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhh-ccccceeeeEeeccccc
Confidence 2222 2233556 677776654332221111100 11123344444443332111 12223348888888887
Q ss_pred CccCCCCCc--cCCCCCCeEEccCCCC---CCc--ccc-ccchhcCCCCccEEEccCCcCCCCCCc---cccCCCCCCEE
Q 047861 204 LHHFPPSSS--ANFSSLKALDLSQNQF---NNS--LFQ-FGSWVFGLHNLVFFDLSGNQFQGKIPI---GLGNLTFLRHL 272 (368)
Q Consensus 204 ~~~~~~~~~--~~~~~L~~L~l~~n~l---~~~--~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L 272 (368)
..+...... ..-+.++.+++....- -+. ... ....-...--+..+.++.+.+...... .+..-+.+..|
T Consensus 366 ldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kl 445 (553)
T KOG4242|consen 366 LDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKL 445 (553)
T ss_pred cccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccc
Confidence 766544322 2335666666654321 000 000 000011122366777777766522221 22344678888
Q ss_pred eCCCCcCCC----CCChhccCCCCCCEEEccCCccc
Q 047861 273 DLSDNEFNS----AIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 273 ~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
++++|...+ .+|..+....+++....+.|...
T Consensus 446 disgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 446 DISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 888887654 23444455556777766666443
Done!