Query 047861
Match_columns 368
No_of_seqs 298 out of 4135
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.6E-44 1.9E-48 356.1 24.4 327 11-365 5-364 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 6.2E-43 2.1E-47 312.5 19.2 296 14-358 2-306 (313)
3 4eco_A Uncharacterized protein 100.0 1.4E-39 4.7E-44 317.7 20.9 296 15-328 27-446 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 2.2E-37 7.4E-42 308.0 24.7 273 13-308 264-661 (876)
5 3rgz_A Protein brassinosteroid 100.0 3.9E-36 1.3E-40 299.6 24.6 273 78-363 378-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 3.9E-35 1.3E-39 275.8 23.9 302 46-361 6-412 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 1.9E-33 6.5E-38 265.9 23.9 278 60-357 32-333 (477)
8 3t6q_A CD180 antigen; protein- 100.0 4.7E-33 1.6E-37 270.9 25.8 287 61-365 255-544 (606)
9 3v47_A TOLL-like receptor 5B a 100.0 1.6E-33 5.4E-38 264.8 20.7 261 60-332 54-412 (455)
10 4fcg_A Uncharacterized protein 100.0 1.9E-34 6.5E-39 259.1 10.7 278 13-354 22-311 (328)
11 3t6q_A CD180 antigen; protein- 100.0 5.4E-32 1.9E-36 263.4 26.5 289 60-366 33-398 (606)
12 2id5_A Lingo-1, leucine rich r 100.0 1.4E-31 4.8E-36 253.0 26.0 257 60-331 56-336 (477)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-31 4E-36 261.0 24.5 145 214-366 397-542 (606)
14 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-31 9E-36 258.5 25.6 124 239-367 395-520 (606)
15 4eco_A Uncharacterized protein 100.0 3.3E-32 1.1E-36 265.5 17.4 282 60-367 206-565 (636)
16 3o6n_A APL1; leucine-rich repe 100.0 8.1E-31 2.8E-35 241.4 24.9 268 61-358 46-332 (390)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-31 6.2E-36 255.0 20.6 107 60-178 21-127 (520)
18 3oja_B Anopheles plasmodium-re 100.0 1.7E-30 5.9E-35 251.9 26.9 295 34-359 6-339 (597)
19 1xku_A Decorin; proteoglycan, 100.0 4.5E-30 1.5E-34 231.1 27.5 252 92-357 52-306 (330)
20 3j0a_A TOLL-like receptor 5; m 100.0 4.1E-31 1.4E-35 266.0 22.1 294 48-357 14-375 (844)
21 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-31 7.2E-36 256.2 19.1 170 47-228 3-184 (549)
22 2ft3_A Biglycan; proteoglycan, 100.0 2.7E-30 9.4E-35 232.7 24.0 260 92-366 54-318 (332)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.4E-31 3.2E-35 252.3 21.7 109 60-180 52-160 (562)
24 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-31 4.7E-36 239.0 14.2 234 92-363 50-287 (313)
25 2z66_A Variable lymphocyte rec 100.0 2.7E-30 9.2E-35 230.1 21.7 263 92-367 28-297 (306)
26 4ecn_A Leucine-rich repeat pro 100.0 7.8E-31 2.7E-35 261.0 20.1 281 60-365 491-826 (876)
27 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-30 7.6E-35 247.4 22.4 104 59-178 44-150 (520)
28 4fmz_A Internalin; leucine ric 100.0 5.2E-29 1.8E-33 225.7 30.0 263 60-361 66-328 (347)
29 1ziw_A TOLL-like receptor 3; i 100.0 5.1E-30 1.7E-34 252.8 24.2 280 60-356 25-365 (680)
30 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-29 4.9E-34 228.0 24.6 283 47-355 32-331 (332)
31 2z63_A TOLL-like receptor 4, v 100.0 3.2E-30 1.1E-34 249.0 21.7 124 239-367 392-517 (570)
32 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-29 5.3E-34 249.3 26.4 205 60-277 49-306 (680)
33 2z63_A TOLL-like receptor 4, v 100.0 5.5E-30 1.9E-34 247.4 22.5 291 61-368 53-494 (570)
34 1xku_A Decorin; proteoglycan, 100.0 5.5E-29 1.9E-33 224.0 27.2 285 46-355 29-330 (330)
35 3o6n_A APL1; leucine-rich repe 100.0 4.5E-29 1.6E-33 229.8 24.7 272 60-359 69-354 (390)
36 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-29 5.4E-34 243.7 22.2 146 63-228 34-181 (562)
37 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-29 7.3E-34 253.5 23.0 282 60-364 48-400 (844)
38 4fmz_A Internalin; leucine ric 100.0 3.5E-28 1.2E-32 220.3 28.3 267 60-367 44-310 (347)
39 2z80_A TOLL-like receptor 2, v 100.0 5.4E-30 1.8E-34 232.8 15.1 254 93-359 53-316 (353)
40 3oja_B Anopheles plasmodium-re 100.0 6.5E-29 2.2E-33 240.9 23.6 268 60-360 75-361 (597)
41 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-28 5.4E-33 239.9 26.1 119 244-367 446-565 (635)
42 1o6v_A Internalin A; bacterial 100.0 5.4E-28 1.8E-32 227.7 27.2 267 60-361 68-370 (466)
43 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-29 1E-33 241.1 18.6 110 60-178 50-160 (549)
44 2z66_A Variable lymphocyte rec 100.0 8.7E-29 3E-33 220.3 19.9 251 95-359 10-263 (306)
45 1o6v_A Internalin A; bacterial 100.0 8.6E-28 2.9E-32 226.3 27.0 263 60-358 90-389 (466)
46 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-27 6E-32 223.0 25.9 258 61-358 43-332 (457)
47 3o53_A Protein LRIM1, AGAP0063 100.0 2.2E-29 7.6E-34 225.2 11.5 270 61-364 11-283 (317)
48 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-27 5.1E-32 210.1 22.9 239 91-366 31-270 (285)
49 3zyj_A Leucine-rich repeat-con 100.0 4.7E-27 1.6E-31 219.7 25.8 247 63-329 46-293 (440)
50 3zyi_A Leucine-rich repeat-con 100.0 6E-27 2.1E-31 219.7 25.3 235 84-329 69-304 (452)
51 3bz5_A Internalin-J, INLJ; leu 100.0 9.7E-27 3.3E-31 217.9 25.4 257 60-358 64-353 (457)
52 1ozn_A Reticulon 4 receptor; N 100.0 2E-27 7E-32 209.3 18.7 253 59-354 31-284 (285)
53 2z80_A TOLL-like receptor 2, v 100.0 1.3E-27 4.3E-32 217.1 16.7 277 39-332 22-318 (353)
54 3zyi_A Leucine-rich repeat-con 100.0 1.5E-26 5.1E-31 217.0 24.4 228 60-304 75-303 (452)
55 4fcg_A Uncharacterized protein 100.0 1.9E-27 6.3E-32 213.5 16.9 216 116-368 80-301 (328)
56 3zyj_A Leucine-rich repeat-con 100.0 2.2E-26 7.6E-31 215.1 24.8 238 50-304 45-292 (440)
57 4g8a_A TOLL-like receptor 4; l 99.9 2.6E-26 9E-31 224.2 25.3 117 238-358 464-581 (635)
58 3oja_A Leucine-rich immune mol 99.9 9.3E-28 3.2E-32 226.7 13.8 247 80-352 22-270 (487)
59 1wwl_A Monocyte differentiatio 99.9 1.5E-29 5.2E-34 225.8 1.1 254 90-358 41-310 (312)
60 1jl5_A Outer protein YOPM; leu 99.9 5.9E-26 2E-30 212.4 24.2 245 88-367 149-421 (454)
61 3g06_A SSPH2 (leucine-rich rep 99.9 8.8E-27 3E-31 224.7 18.6 273 37-366 12-306 (622)
62 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-28 2.1E-32 215.8 8.9 248 94-367 12-261 (317)
63 3oja_A Leucine-rich immune mol 99.9 6E-27 2.1E-31 221.2 13.3 228 115-367 32-261 (487)
64 2o6q_A Variable lymphocyte rec 99.9 2.6E-25 8.9E-30 194.2 22.7 216 45-303 2-217 (270)
65 3rfs_A Internalin B, repeat mo 99.9 9.6E-26 3.3E-30 197.1 18.6 225 94-367 21-245 (272)
66 1z7x_W Ribonuclease inhibitor; 99.9 5.8E-28 2E-32 227.3 2.3 286 61-359 86-413 (461)
67 1z7x_W Ribonuclease inhibitor; 99.9 1.5E-27 5E-32 224.5 0.9 299 60-366 56-396 (461)
68 1jl5_A Outer protein YOPM; leu 99.9 9.3E-24 3.2E-28 197.5 26.1 234 92-367 131-382 (454)
69 2ast_B S-phase kinase-associat 99.9 1.6E-26 5.5E-31 208.4 7.1 271 44-366 33-315 (336)
70 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.3E-29 189.4 19.8 208 93-332 29-241 (276)
71 2o6q_A Variable lymphocyte rec 99.9 3.7E-23 1.3E-27 180.5 24.5 204 93-330 17-220 (270)
72 3rfs_A Internalin B, repeat mo 99.9 7.2E-25 2.5E-29 191.6 12.0 210 87-338 36-245 (272)
73 1wwl_A Monocyte differentiatio 99.9 1.8E-25 6.2E-30 199.3 7.5 272 37-330 21-311 (312)
74 2z62_A TOLL-like receptor 4, v 99.9 1.2E-23 4.1E-28 184.3 18.8 194 79-304 39-237 (276)
75 1p9a_G Platelet glycoprotein I 99.9 6.7E-23 2.3E-27 180.5 23.0 204 87-304 5-208 (290)
76 2ca6_A RAN GTPase-activating p 99.9 8.9E-26 3.1E-30 207.4 4.2 249 83-331 23-319 (386)
77 3goz_A Leucine-rich repeat-con 99.9 5.2E-25 1.8E-29 200.5 7.0 258 78-336 8-305 (362)
78 2ca6_A RAN GTPase-activating p 99.9 2.8E-25 9.5E-30 204.1 2.9 248 109-361 24-320 (386)
79 1p9a_G Platelet glycoprotein I 99.9 3.6E-22 1.2E-26 175.9 22.4 204 113-329 6-209 (290)
80 3g06_A SSPH2 (leucine-rich rep 99.9 4.7E-22 1.6E-26 191.8 24.5 234 60-339 61-308 (622)
81 3goz_A Leucine-rich repeat-con 99.9 4.9E-24 1.7E-28 194.0 7.1 263 96-359 2-299 (362)
82 1h6u_A Internalin H; cell adhe 99.9 5.5E-22 1.9E-26 176.3 19.0 195 88-305 37-231 (308)
83 1h6u_A Internalin H; cell adhe 99.9 1.4E-21 4.6E-26 173.8 19.5 209 96-329 23-231 (308)
84 3m19_A Variable lymphocyte rec 99.9 2.2E-21 7.4E-26 167.4 20.1 181 141-330 14-194 (251)
85 2ast_B S-phase kinase-associat 99.9 7.9E-24 2.7E-28 190.7 4.3 264 35-336 34-314 (336)
86 4glp_A Monocyte differentiatio 99.9 2.6E-22 8.8E-27 178.8 14.1 235 90-358 62-308 (310)
87 3m19_A Variable lymphocyte rec 99.9 5.9E-21 2E-25 164.7 21.6 181 117-306 14-194 (251)
88 4glp_A Monocyte differentiatio 99.9 3.4E-22 1.2E-26 178.0 12.7 230 61-305 65-308 (310)
89 2o6s_A Variable lymphocyte rec 99.9 1.5E-21 5E-26 163.6 15.7 160 193-367 29-188 (208)
90 2xwt_C Thyrotropin receptor; s 99.9 1.7E-21 5.9E-26 166.8 14.3 179 92-280 31-218 (239)
91 2xwt_C Thyrotropin receptor; s 99.9 4.2E-21 1.4E-25 164.3 14.2 197 117-354 31-236 (239)
92 3ogk_B Coronatine-insensitive 99.8 1.5E-22 5E-27 196.3 3.2 214 136-359 288-528 (592)
93 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 155.4 15.6 177 167-364 29-205 (208)
94 3ogk_B Coronatine-insensitive 99.8 8.2E-23 2.8E-27 198.1 -1.3 140 214-360 340-504 (592)
95 3cvr_A Invasion plasmid antige 99.8 4E-19 1.4E-23 169.4 20.7 189 92-339 59-254 (571)
96 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.7E-24 164.6 16.0 229 83-326 23-257 (350)
97 3cvr_A Invasion plasmid antige 99.8 6.8E-20 2.3E-24 174.7 14.9 211 39-289 35-252 (571)
98 2p1m_B Transport inhibitor res 99.8 1.4E-21 4.8E-26 189.4 0.2 184 164-358 287-520 (594)
99 1m9s_A Internalin B; cell inva 99.8 3.1E-19 1.1E-23 171.9 16.4 172 89-305 40-211 (605)
100 1h6t_A Internalin B; cell adhe 99.8 6E-19 2.1E-23 155.3 15.5 191 120-332 27-217 (291)
101 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.6E-23 158.0 17.4 235 48-302 9-257 (350)
102 2p1m_B Transport inhibitor res 99.8 6.9E-22 2.4E-26 191.6 -4.4 109 60-176 105-221 (594)
103 1h6t_A Internalin B; cell adhe 99.8 9E-19 3.1E-23 154.2 15.4 171 89-304 43-213 (291)
104 3e6j_A Variable lymphocyte rec 99.8 4.6E-18 1.6E-22 144.3 18.5 160 44-231 15-174 (229)
105 1m9s_A Internalin B; cell inva 99.8 1E-18 3.5E-23 168.3 15.9 193 118-332 22-214 (605)
106 2xot_A Amphoterin-induced prot 99.8 2.4E-18 8.1E-23 156.3 17.2 177 144-329 21-203 (361)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 3.6E-18 1.2E-22 144.0 15.9 157 168-332 13-170 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 5.8E-18 2E-22 142.7 17.1 155 144-306 14-168 (220)
109 4ezg_A Putative uncharacterize 99.8 1.3E-18 4.3E-23 144.3 12.8 154 190-358 42-195 (197)
110 2v9t_B SLIT homolog 2 protein 99.8 4.1E-18 1.4E-22 143.7 15.7 154 169-330 14-167 (220)
111 2v9t_B SLIT homolog 2 protein 99.8 1.2E-17 4.1E-22 140.8 17.3 152 144-304 14-165 (220)
112 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.9E-22 141.9 17.0 157 167-332 20-176 (229)
113 4b8c_D Glucose-repressible alc 99.8 1.3E-19 4.3E-24 178.8 2.3 229 14-284 128-358 (727)
114 4ezg_A Putative uncharacterize 99.8 9.6E-18 3.3E-22 139.0 13.1 109 189-303 85-193 (197)
115 2xot_A Amphoterin-induced prot 99.7 1.9E-17 6.4E-22 150.4 14.2 176 120-304 21-202 (361)
116 1dce_A Protein (RAB geranylger 99.7 7.6E-21 2.6E-25 182.0 -11.2 205 114-351 346-567 (567)
117 1xeu_A Internalin C; cellular 99.7 1.1E-17 3.7E-22 145.1 9.0 173 139-332 17-189 (263)
118 2ell_A Acidic leucine-rich nuc 99.7 6.6E-17 2.3E-21 130.3 12.0 138 216-364 24-166 (168)
119 1xeu_A Internalin C; cellular 99.7 4.8E-17 1.7E-21 140.9 11.5 170 90-281 17-186 (263)
120 1w8a_A SLIT protein; signaling 99.7 2.9E-16 9.9E-21 129.4 14.2 133 195-332 11-143 (192)
121 4b8c_D Glucose-repressible alc 99.7 2E-17 6.7E-22 163.2 7.3 150 207-367 215-364 (727)
122 2je0_A Acidic leucine-rich nuc 99.7 2E-16 6.9E-21 124.8 10.7 128 216-353 17-149 (149)
123 1dce_A Protein (RAB geranylger 99.7 2.3E-19 8E-24 171.7 -7.9 106 244-359 442-548 (567)
124 1w8a_A SLIT protein; signaling 99.7 7.3E-16 2.5E-20 127.0 12.9 133 218-361 10-143 (192)
125 2ell_A Acidic leucine-rich nuc 99.7 6.7E-16 2.3E-20 124.4 11.3 136 189-329 21-161 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 6.1E-16 2.1E-20 122.0 9.6 130 190-324 15-149 (149)
127 2o6r_A Variable lymphocyte rec 99.6 5.5E-15 1.9E-19 120.0 13.7 133 194-332 9-141 (177)
128 2o6r_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 117.2 15.5 132 168-307 9-140 (177)
129 3sb4_A Hypothetical leucine ri 99.6 4.5E-16 1.5E-20 139.5 5.6 242 91-350 48-327 (329)
130 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.5E-19 118.9 14.0 129 195-330 13-141 (193)
131 2wfh_A SLIT homolog 2 protein 99.6 5.2E-14 1.8E-18 115.9 15.0 127 169-304 13-139 (193)
132 1a9n_A U2A', U2A'; complex (nu 99.6 1.2E-14 3.9E-19 118.0 10.4 82 244-328 43-126 (176)
133 4fdw_A Leucine rich hypothetic 99.6 4E-13 1.4E-17 123.2 20.8 248 86-356 130-382 (401)
134 3sb4_A Hypothetical leucine ri 99.5 2.6E-14 8.8E-19 128.0 9.2 103 215-322 225-328 (329)
135 1a9n_A U2A', U2A'; complex (nu 99.5 4.6E-14 1.6E-18 114.5 9.1 131 190-329 17-154 (176)
136 4fdw_A Leucine rich hypothetic 99.5 4.4E-12 1.5E-16 116.2 19.8 227 85-328 151-383 (401)
137 3g39_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 106.9 11.3 109 217-331 10-118 (170)
138 1ds9_A Outer arm dynein; leuci 99.4 7.1E-16 2.4E-20 127.7 -7.4 132 211-357 43-185 (198)
139 3un9_A NLR family member X1; l 99.4 1.1E-14 3.9E-19 132.1 -0.6 142 216-357 126-283 (372)
140 3un9_A NLR family member X1; l 99.4 5.5E-15 1.9E-19 134.2 -2.8 166 192-364 72-259 (372)
141 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 105.2 11.4 108 218-331 14-121 (174)
142 3g39_A Variable lymphocyte rec 99.4 3.4E-12 1.2E-16 102.7 12.5 108 193-306 10-117 (170)
143 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.6E-20 124.8 -7.5 138 215-362 17-158 (198)
144 2r9u_A Variable lymphocyte rec 99.4 9.4E-12 3.2E-16 100.4 12.6 105 194-304 14-118 (174)
145 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.6E-15 105.2 9.7 106 219-330 11-118 (347)
146 2ra8_A Uncharacterized protein 99.1 1E-10 3.4E-15 105.4 6.4 157 187-355 167-341 (362)
147 2ifg_A High affinity nerve gro 99.1 6E-10 2E-14 100.3 10.9 104 170-281 12-117 (347)
148 4fs7_A Uncharacterized protein 99.1 1.3E-08 4.6E-13 93.1 19.6 85 262-354 292-376 (394)
149 2ra8_A Uncharacterized protein 99.0 2.3E-10 7.9E-15 103.0 5.4 139 211-360 167-323 (362)
150 4gt6_A Cell surface protein; l 99.0 4.8E-08 1.6E-12 89.4 20.9 87 85-175 80-169 (394)
151 4fs7_A Uncharacterized protein 99.0 1.7E-08 5.8E-13 92.4 17.5 144 189-349 250-393 (394)
152 1io0_A Tropomodulin; LRR prote 98.8 1.3E-09 4.6E-14 88.6 3.9 118 239-357 32-164 (185)
153 4gt6_A Cell surface protein; l 98.8 2E-07 7E-12 85.2 17.9 246 87-356 109-390 (394)
154 4h09_A Hypothetical leucine ri 98.7 2.7E-06 9.2E-11 77.2 21.2 67 80-151 57-123 (379)
155 3e4g_A ATP synthase subunit S, 98.7 7.9E-09 2.7E-13 82.2 3.1 86 244-329 62-154 (176)
156 1io0_A Tropomodulin; LRR prote 98.7 5.2E-09 1.8E-13 85.1 1.9 117 214-330 34-166 (185)
157 3e4g_A ATP synthase subunit S, 98.5 3.5E-08 1.2E-12 78.4 2.5 82 268-354 62-149 (176)
158 3rw6_A Nuclear RNA export fact 98.4 5.4E-07 1.8E-11 77.0 6.9 78 266-350 169-257 (267)
159 4h09_A Hypothetical leucine ri 98.4 4.5E-05 1.5E-09 69.0 20.2 128 190-324 215-342 (379)
160 3rw6_A Nuclear RNA export fact 98.4 7.3E-08 2.5E-12 82.4 0.9 81 240-322 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.9 7.7E-06 2.6E-10 66.2 4.2 67 215-281 40-112 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 2E-05 6.8E-10 63.8 3.1 87 239-325 37-136 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.006 2E-07 45.8 6.6 55 247-303 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0096 3.3E-07 44.6 6.9 35 118-152 32-66 (130)
165 2lz0_A Uncharacterized protein 57.3 18 0.00061 25.1 4.8 44 205-252 9-52 (100)
166 2lz0_A Uncharacterized protein 51.6 55 0.0019 22.5 6.6 14 87-100 15-28 (100)
167 3ox7_P MH027; urokinase-type p 20.7 32 0.0011 15.8 0.6 10 45-54 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.6e-44 Score=356.09 Aligned_cols=327 Identities=28% Similarity=0.397 Sum_probs=215.9
Q ss_pred cccccCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcccccEEecCCCCcEEEEecCCCCCCCCCCCccccc---ccc-
Q 047861 11 TFVGCIDSEREALLELKQDLKDPSSRLASWNIGDEDCCAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGK---INL- 86 (368)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~---~~~- 86 (368)
+.+.+.+.|++||++||+++.||. .+++|+. +.+||.|.||.|+ .++|+++||++. .+.|. +|.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~--~~~v~~L~L~~~--------~l~g~~~~l~~~ 72 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR--DDKVTSIDLSSK--------PLNVGFSAVSSS 72 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE--TTEEEEEECTTS--------CCCEEHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC--CCcEEEEECCCC--------CcCCccCccChh
Confidence 444557899999999999999888 8999985 7899999999998 689999999984 45554 444
Q ss_pred ----------------------cccCCCCCcEEECCCCCCCCCcCCc--ccCCCCCCCEEeCCCCcccCCcchhc-CCCC
Q 047861 87 ----------------------SLVDFKHLIHLDLSGNDFQGIQIPK--YLGSLKNLRYLNLSRANFAGVTPYQL-GSLS 141 (368)
Q Consensus 87 ----------------------~~~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~ 141 (368)
.+.++++|++|+|++|.+++. +|. .++++++|++|++++|.+.+.+|..+ .+++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 151 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCT
T ss_pred HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCC
Confidence 455555666666666655543 444 55556666666666665555544443 4556
Q ss_pred CCCEEeCCCCcCCcccchhh--hcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCC
Q 047861 142 NLQYLDLSQNYLLQVESFSW--LSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLK 219 (368)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (368)
+|++|++++|.+.......+ +..+++|++|++++|.+..... ...+++|++|++++|.+.+..+. +..+++|+
T Consensus 152 ~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~ 226 (768)
T 3rgz_A 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226 (768)
T ss_dssp TCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCC
T ss_pred CCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCC
Confidence 66666666665544332221 4555666666666665544322 14667777777777777776655 67777777
Q ss_pred eEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCC-CCCCEEEc
Q 047861 220 ALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKL-NDLEFLSL 298 (368)
Q Consensus 220 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l 298 (368)
+|++++|.+++..+. .+.++++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++
T Consensus 227 ~L~Ls~n~l~~~~~~---~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L 301 (768)
T 3rgz_A 227 HLDISGNKLSGDFSR---AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301 (768)
T ss_dssp EEECCSSCCCSCHHH---HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred EEECcCCcCCCcccH---HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence 787777777766665 6677777777777777776555543 56666666666666666666655553 66777777
Q ss_pred cCCcccccCCcccccCCCCCEEecCCCcCcccchhh-HhhhcccccccccEEEccCCcceeccCcccc
Q 047861 299 RSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQV-LDIFSACGAYALESLVLRSCQFSGHMTNQLG 365 (368)
Q Consensus 299 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (368)
++|.+++.+|..+..+++|++|++++|.+++.+|.. +..++ +|++|++++|+++|.+|..++
T Consensus 302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~-----~L~~L~Ls~n~l~~~~p~~l~ 364 (768)
T 3rgz_A 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-----GLKVLDLSFNEFSGELPESLT 364 (768)
T ss_dssp CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT-----TCCEEECCSSEEEECCCTTHH
T ss_pred cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC-----CCCEEeCcCCccCccccHHHH
Confidence 777776666666677777777777777766666644 55555 666666666666666666554
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.2e-43 Score=312.52 Aligned_cols=296 Identities=28% Similarity=0.446 Sum_probs=246.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCCCCCCCCCCCCCCCcc--cccEEecCCC--CcEEEEecCCCCCCCCCCCcccc--ccccc
Q 047861 14 GCIDSEREALLELKQDLKDPSSRLASWNIGDEDCCA--WGGVVCNNFT--GHVLQLNLGNPNPNNGTGSKLVG--KINLS 87 (368)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~~~~~~~~~~~~--~~~~~ 87 (368)
.|.+.|++||++||+++.+|. .+.+|+. +.+||. |.||.|.... ++|+.++|++ +.+.+ .+|..
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~-~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~~~~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPIPSS 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT-TSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEECCGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC-CCCCCcCCCcceEeCCCCCCceEEEEECCC--------CCccCCcccChh
Confidence 589999999999999998876 6889986 678998 9999997654 8999999999 57888 89999
Q ss_pred ccCCCCCcEEECCC-CCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCC
Q 047861 88 LVDFKHLIHLDLSG-NDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLS 166 (368)
Q Consensus 88 ~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 166 (368)
+.++++|++|++++ |.+.+. +|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+......
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------- 143 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP------- 143 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-------
T ss_pred HhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-------
Confidence 99999999999995 888875 899999999999999999999988888899999999999999876532211
Q ss_pred CCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCC-CCCeEEccCCCCCCccccccchhcCCCCc
Q 047861 167 LLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFS-SLKALDLSQNQFNNSLFQFGSWVFGLHNL 245 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 245 (368)
.+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+. .+..++ |
T Consensus 144 --------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L 199 (313)
T 1ogq_A 144 --------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-L 199 (313)
T ss_dssp --------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-C
T ss_pred --------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-c
Confidence 234456666666666666666666677776 788888888888776666 566665 8
Q ss_pred cEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCC
Q 047861 246 VFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFV 325 (368)
Q Consensus 246 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 325 (368)
++|++++|.+.+..|..+..+++|+.|++++|.+++.++. +..+++|++|++++|++++.+|..+..+++|++|++++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 8888888888877888888889999999999988876554 678899999999999999889999999999999999999
Q ss_pred cCcccchhhHhhhcccccccccEEEccCCc-cee
Q 047861 326 KLSQDLSQVLDIFSACGAYALESLVLRSCQ-FSG 358 (368)
Q Consensus 326 ~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-l~~ 358 (368)
++++.+|.. ..++ +|+++++++|+ +.|
T Consensus 279 ~l~~~ip~~-~~l~-----~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQ-----RFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEEECCCS-TTGG-----GSCGGGTCSSSEEES
T ss_pred cccccCCCC-cccc-----ccChHHhcCCCCccC
Confidence 999888875 6666 89999999997 665
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.4e-39 Score=317.66 Aligned_cols=296 Identities=20% Similarity=0.253 Sum_probs=185.6
Q ss_pred cCHHHHHHHHHHHhhCCCCCCC--------CCCCCCCCCCCccc---ccEEecCCCCcEEEEecCCCCCCCCCCCccccc
Q 047861 15 CIDSEREALLELKQDLKDPSSR--------LASWNIGDEDCCAW---GGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGK 83 (368)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~ 83 (368)
....|++||.++++++.++.|. ..+|+. +.++|.| .||.|+. .+||++|+|++ +.+.|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~-~~~~c~w~~~~GV~C~~-~~~V~~L~L~~--------~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF-NKELDMWGAQPGVSLNS-NGRVTGLSLEG--------FGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC-SSCGGGTTCCTTEEECT-TCCEEEEECTT--------SCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC-CCCcccccCCCCeEEcC-CCCEEEEEecC--------cccCCc
Confidence 3357999999999999666544 236997 7899999 9999976 48999999999 577888
Q ss_pred ccccccCCCCCcEEECCCCCC------CC---------------------------------------------------
Q 047861 84 INLSLVDFKHLIHLDLSGNDF------QG--------------------------------------------------- 106 (368)
Q Consensus 84 ~~~~~~~l~~L~~L~l~~~~~------~~--------------------------------------------------- 106 (368)
+|.+++++++|++|+|++|.+ .+
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 888888888888888877743 00
Q ss_pred -------------------CcCCcccCCCCCCCEEeCCCCcccCC-----------------cchhcC--CCCCCCEEeC
Q 047861 107 -------------------IQIPKYLGSLKNLRYLNLSRANFAGV-----------------TPYQLG--SLSNLQYLDL 148 (368)
Q Consensus 107 -------------------~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l 148 (368)
..+|..++++++|++|++++|.+++. +|..++ ++++|++|++
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 02566677788888888888888774 677777 7888888888
Q ss_pred CCCcCCcccchhhhcCCCCCCEEeCCCCC-CCC--Cchhhhh---cCCCCCCCEEEccCCCCccCCCC--CccCCCCCCe
Q 047861 149 SQNYLLQVESFSWLSGLSLLEHLDLSQAD-LSK--ATDWLLV---TNSLSSLKVLNLSYCELHHFPPS--SSANFSSLKA 220 (368)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~ 220 (368)
++|.+....+ ..+.++++|++|++++|. +.+ .+..... +..+++|++|++++|.+. ..|. .+..+++|++
T Consensus 257 ~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~ 334 (636)
T 4eco_A 257 YNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGM 334 (636)
T ss_dssp ECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCE
T ss_pred cCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCE
Confidence 8887554322 336777888888888776 654 2221111 122366777777777666 4444 5666667777
Q ss_pred EEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCC-CCEEeCCCCcCCCCCChhccCCC--CCCEEE
Q 047861 221 LDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF-LRHLDLSDNEFNSAIPGWLSKLN--DLEFLS 297 (368)
Q Consensus 221 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~ 297 (368)
|++++|.+++.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|+
T Consensus 335 L~L~~N~l~g~ip----~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 335 LECLYNQLEGKLP----AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp EECCSCCCEEECC----CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEE
T ss_pred EeCcCCcCccchh----hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEE
Confidence 7777776665444 2334445555555555444 44444444444 555555555444 3343333322 444444
Q ss_pred ccCCcccccCCcccc-------cCCCCCEEecCCCcCc
Q 047861 298 LRSNSLQGKIPTSFV-------RLCKLTSIDLSFVKLS 328 (368)
Q Consensus 298 l~~n~l~~~~~~~l~-------~l~~L~~L~l~~n~l~ 328 (368)
+++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC
Confidence 444444444444333 3334444444444444
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-37 Score=307.99 Aligned_cols=273 Identities=19% Similarity=0.223 Sum_probs=197.0
Q ss_pred cccCHHHHHHHHHHHhhCCCCCCCCCCCCCCC----CCC--ccc------------ccEEecCCCCcEEEEecCCCCCCC
Q 047861 13 VGCIDSEREALLELKQDLKDPSSRLASWNIGD----EDC--CAW------------GGVVCNNFTGHVLQLNLGNPNPNN 74 (368)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~----~~~--c~w------------~gv~c~~~~~~v~~l~l~~~~~~~ 74 (368)
..+...|++||++|++++.+| +|+..+ .++ |.| .||.|+. .+||++|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 345578999999999999877 454322 345 999 9999986 78999999999
Q ss_pred CCCCcccccccccccCCCCCcEEEC-CCCCCCCC----------------------------------------------
Q 047861 75 GTGSKLVGKINLSLVDFKHLIHLDL-SGNDFQGI---------------------------------------------- 107 (368)
Q Consensus 75 ~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~---------------------------------------------- 107 (368)
+.+.|.+|..++++++|++|+| ++|.+.+.
T Consensus 333 ---~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~ 409 (876)
T 4ecn_A 333 ---FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN 409 (876)
T ss_dssp ---TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred ---CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence 6788888888999999999999 65532111
Q ss_pred -----------------------------cCCcccCCCCCCCEEeCCCCcccC-----------------CcchhcC--C
Q 047861 108 -----------------------------QIPKYLGSLKNLRYLNLSRANFAG-----------------VTPYQLG--S 139 (368)
Q Consensus 108 -----------------------------~~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~ 139 (368)
.+|..++++++|++|+|++|.+++ .+|..++ +
T Consensus 410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~ 489 (876)
T 4ecn_A 410 RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489 (876)
T ss_dssp TCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG
T ss_pred hCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhcc
Confidence 066778888888888888888887 2677777 8
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCC-CCC--Cchhhh----hcCCCCCCCEEEccCCCCccCCCC--
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQAD-LSK--ATDWLL----VTNSLSSLKVLNLSYCELHHFPPS-- 210 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-- 210 (368)
+++|++|++++|.+....+ ..+..+++|++|++++|. +.. .+.... .+..+++|+.|++++|.+. ..|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred CCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 8888888888887554333 347888888888888887 654 232111 2345668888888888877 4555
Q ss_pred CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCC-CCEEeCCCCcCCCCCChhccC
Q 047861 211 SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF-LRHLDLSDNEFNSAIPGWLSK 289 (368)
Q Consensus 211 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~l~~ 289 (368)
.+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred hhhcCCCCCEEECCCCCcc-cch----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 6777788888888888776 443 4567777777777777777 67766777777 777777777776 45655544
Q ss_pred CCC--CCEEEccCCcccccCC
Q 047861 290 LND--LEFLSLRSNSLQGKIP 308 (368)
Q Consensus 290 l~~--L~~L~l~~n~l~~~~~ 308 (368)
++. |+.|++++|++.+.+|
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSS
T ss_pred cccCCCCEEECcCCcCCCccc
Confidence 432 6666666666654433
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-36 Score=299.58 Aligned_cols=273 Identities=29% Similarity=0.353 Sum_probs=213.2
Q ss_pred CcccccccccccC--CCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCc
Q 047861 78 SKLVGKINLSLVD--FKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQ 155 (368)
Q Consensus 78 ~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (368)
+.+.+.+|..+.. +++|++|++++|.+++. +|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.+..
T Consensus 378 N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGK-IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SEEEEECCTTTTCSTTCCCCEEECCSSEEEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCCcChhhhhcccCCccEEECCCCccccc-cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 4455555555544 56666666666666654 66777777778888887777777777777777788888888777654
Q ss_pred ccchhhhcCCCCCCEEeCCCCCCCCC-chhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCcccc
Q 047861 156 VESFSWLSGLSLLEHLDLSQADLSKA-TDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQ 234 (368)
Q Consensus 156 ~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 234 (368)
.... .+..+++|++|++++|.+.+. +. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|.
T Consensus 457 ~~p~-~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 457 EIPQ-ELMYVKTLETLILDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCG-GGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cCCH-HHcCCCCceEEEecCCcccCcCCH---HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 3322 266778888888888877654 32 446778888888888888888888888888888888888888877776
Q ss_pred ccchhcCCCCccEEEccCCcCCCCCCccc---------------------------------------------------
Q 047861 235 FGSWVFGLHNLVFFDLSGNQFQGKIPIGL--------------------------------------------------- 263 (368)
Q Consensus 235 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l--------------------------------------------------- 263 (368)
.+..+++|+.|++++|.+.+.+|..+
T Consensus 533 ---~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 533 ---ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp ---GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred ---HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 67788888888888887776555432
Q ss_pred -------------------cCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCC
Q 047861 264 -------------------GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSF 324 (368)
Q Consensus 264 -------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 324 (368)
..+++|+.|++++|.+++.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 3356788999999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccchhhHhhhcccccccccEEEccCCcceeccCcc
Q 047861 325 VKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQ 363 (368)
Q Consensus 325 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 363 (368)
|+++|.+|..+..++ +|++|++++|+++|.||..
T Consensus 690 N~l~g~ip~~l~~l~-----~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 690 NKLDGRIPQAMSALT-----MLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCCEECCCGGGGGCC-----CCSEEECCSSEEEEECCSS
T ss_pred CcccCcCChHHhCCC-----CCCEEECcCCcccccCCCc
Confidence 999999999988888 9999999999999999864
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-35 Score=275.76 Aligned_cols=302 Identities=23% Similarity=0.270 Sum_probs=191.6
Q ss_pred CCccccc--EEecCCC--------CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCC
Q 047861 46 DCCAWGG--VVCNNFT--------GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGS 115 (368)
Q Consensus 46 ~~c~w~g--v~c~~~~--------~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 115 (368)
..|.|.+ +.|.... .+++.|||++ +.+.+..|..+.++++|++|++++|.+.+.-.+..+..
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL--------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG 77 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS--------SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecC--------CccCcCChhHhccCccccEEECcCCcccceECcccccc
Confidence 3455544 6665322 5789999999 56777778888888888888888888765423566788
Q ss_pred CCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcc-cchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCC
Q 047861 116 LKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQV-ESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSL 194 (368)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 194 (368)
+++|++|++++|.+++..|..+.++++|++|++++|.+... +....+..+++|++|++++|.+....... .+..+++|
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L 156 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRF 156 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc-ccCCCCcc
Confidence 88888888888888887788888888888888888887642 22233677888888888888887662211 24567888
Q ss_pred CEEEccCCCCccCCCCCccCC----------------------------------CCCCeEEccCCCCCCcccc------
Q 047861 195 KVLNLSYCELHHFPPSSSANF----------------------------------SSLKALDLSQNQFNNSLFQ------ 234 (368)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~----------------------------------~~L~~L~l~~n~l~~~~~~------ 234 (368)
++|++++|.+.+..+..+..+ ++|++|++++|.+++..+.
T Consensus 157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 236 (455)
T 3v47_A 157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236 (455)
T ss_dssp CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence 888888887776655444332 4566666666655432211
Q ss_pred ------------------------------------------------------ccchhcCCCCccEEEccCCcCCCCCC
Q 047861 235 ------------------------------------------------------FGSWVFGLHNLVFFDLSGNQFQGKIP 260 (368)
Q Consensus 235 ------------------------------------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~ 260 (368)
.+..+..+++|++|++++|.+.+..+
T Consensus 237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 00134455555555555555554445
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcc
Q 047861 261 IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSA 340 (368)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~ 340 (368)
..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~- 395 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLT- 395 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCC-
Confidence 5555555555555555555555455555555666666666655555555555556666666666655554444444444
Q ss_pred cccccccEEEccCCcceeccC
Q 047861 341 CGAYALESLVLRSCQFSGHMT 361 (368)
Q Consensus 341 ~~~~~L~~L~l~~n~l~~~~p 361 (368)
+|++|++++|++++..|
T Consensus 396 ----~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 396 ----SLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ----TCCEEECCSSCBCCCTT
T ss_pred ----cccEEEccCCCcccCCC
Confidence 56666666666655555
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=265.87 Aligned_cols=278 Identities=24% Similarity=0.297 Sum_probs=165.5
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
..++.|||++ +.+.+..+..|.++++|++|+|++|.+++. .|..+.++++|++|++++|.++...+..+.+
T Consensus 32 ~~l~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGK--------NRIKTLNQDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG 102 (477)
T ss_dssp TTCSEEECCS--------SCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTT
T ss_pred CCCcEEECCC--------CccceECHhHccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccC
Confidence 3677888887 456666666777777777777777777654 4666777777777777777777665555667
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLK 219 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (368)
+++|++|++++|.+...... .+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDY-MFQDLYNLKSLEVGDNDLVYISH--RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179 (477)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEECCTTCCEECT--TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred CCCCCEEECCCCccccCChh-HccccccCCEEECCCCccceeCh--hhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence 77777777777766554332 25666666666666666554421 1334556666666666665555544455555555
Q ss_pred eEEccCCCCCCccccccchhcCCC------------------------CccEEEccCCcCCCCCCccccCCCCCCEEeCC
Q 047861 220 ALDLSQNQFNNSLFQFGSWVFGLH------------------------NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLS 275 (368)
Q Consensus 220 ~L~l~~n~l~~~~~~~~~~~~~~~------------------------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 275 (368)
.|++++|.+.+..+. .+..++ +|++|++++|.+....+..+..+++|+.|+++
T Consensus 180 ~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 180 VLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp EEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred EEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 555555555443332 334444 45555555555542222345555666666666
Q ss_pred CCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCc
Q 047861 276 DNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQ 355 (368)
Q Consensus 276 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 355 (368)
+|.+++..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++..+..+..++ +|++|++++|+
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~ 331 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG-----NLETLILDSNP 331 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG-----GCCEEECCSSC
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc-----ccCEEEccCCC
Confidence 6666555555555566666666666666655555566666666666666666654444445455 66666666665
Q ss_pred ce
Q 047861 356 FS 357 (368)
Q Consensus 356 l~ 357 (368)
++
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.7e-33 Score=270.86 Aligned_cols=287 Identities=25% Similarity=0.269 Sum_probs=233.9
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
.++.+++++ +.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+
T Consensus 255 ~L~~L~l~~--------n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQK--------HYFFNISSNTFHCFSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTT--------CCCSSCCTTTTTTCTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeec--------CccCccCHHHhccccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 688999988 5677777777899999999999999988 588889999999999999999998878888899
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCe
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKA 220 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (368)
++|++|++++|.+........+..+++|++|++++|.+.........+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 404 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSE
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCe
Confidence 99999999999876443344478899999999999988766433345678889999999999888888888888889999
Q ss_pred EEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCC---CChhccCCCCCCEEE
Q 047861 221 LDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSA---IPGWLSKLNDLEFLS 297 (368)
Q Consensus 221 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~ 297 (368)
|++++|.+++..+.. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|+
T Consensus 405 L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 405 LDLAFTRLKVKDAQS--PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp EECTTCCEECCTTCC--TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred EECCCCcCCCcccch--hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 999998887654431 467788888888888888877777788888888888888888662 234577788888888
Q ss_pred ccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCcccc
Q 047861 298 LRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLG 365 (368)
Q Consensus 298 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (368)
+++|.+++..|..+..+++|++|++++|++++..|..+..++ +| +|++++|++++..|..++
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~-----~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK-----GI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC-----SC-EEECCSSCCCCCCGGGHH
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc-----cc-EEECcCCcccccCHhhcc
Confidence 888888877778888888888888888888888887777777 78 888888888876666554
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-33 Score=264.83 Aligned_cols=261 Identities=25% Similarity=0.253 Sum_probs=189.8
Q ss_pred CcEEEEecCCCCCCCCCCCcccccc-cccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchh--
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKI-NLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQ-- 136 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-- 136 (368)
.+++.|++++ +.+.+.+ +..|.++++|++|++++|.+++. .|..+.++++|++|++++|.+++..+..
T Consensus 54 ~~L~~L~L~~--------n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 124 (455)
T 3v47_A 54 QDLQFLKVEQ--------QTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNF 124 (455)
T ss_dssp TTCCEEECCC--------CSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSST
T ss_pred ccccEEECcC--------CcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCccc
Confidence 4567777777 3444444 33566666666666666666543 4555666666666666666665543333
Q ss_pred cCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCch-hhhh----------------------------
Q 047861 137 LGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATD-WLLV---------------------------- 187 (368)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~---------------------------- 187 (368)
+..+++|++|++++|.+.......++..+++|++|++++|.+..... ....
T Consensus 125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~ 204 (455)
T 3v47_A 125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204 (455)
T ss_dssp TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence 55666666666666665555443335556666666666555443311 0000
Q ss_pred ---cC---------------------------------------------------------------CCCCCCEEEccC
Q 047861 188 ---TN---------------------------------------------------------------SLSSLKVLNLSY 201 (368)
Q Consensus 188 ---~~---------------------------------------------------------------~~~~L~~L~l~~ 201 (368)
+. ..++|+.|++++
T Consensus 205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 00 124667777777
Q ss_pred CCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCC
Q 047861 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNS 281 (368)
Q Consensus 202 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 281 (368)
|.+.+..+..+..+++|++|++++|.+++..+. .+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN---AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTT---TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChh---HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc
Confidence 777777788888999999999999999987776 78899999999999999987778889999999999999999998
Q ss_pred CCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccch
Q 047861 282 AIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 282 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 889999999999999999999997666678899999999999999999876
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.9e-34 Score=259.07 Aligned_cols=278 Identities=19% Similarity=0.225 Sum_probs=159.4
Q ss_pred cccCHHHHHHHHHHHhhC-CCCCCCCCCCC---CCCCCCcccccEEecC--------CCCcEEEEecCCCCCCCCCCCcc
Q 047861 13 VGCIDSEREALLELKQDL-KDPSSRLASWN---IGDEDCCAWGGVVCNN--------FTGHVLQLNLGNPNPNNGTGSKL 80 (368)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~w~---~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~~~~~~~~~~ 80 (368)
..+...|++||+.|+.++ .++..+...|. ....++|.|.|+.|.. ...+++.|+|++ +.+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~--------n~l 93 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS--------VPL 93 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES--------SCC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC--------CCc
Confidence 345678999999999998 67777778894 3367899999999942 235677777777 344
Q ss_pred cccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchh
Q 047861 81 VGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFS 160 (368)
Q Consensus 81 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (368)
. .+|..+.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|........
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~- 168 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE- 168 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-
T ss_pred h-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-
Confidence 4 56666777777777777777777 36777777777777777777776 4466677777777777776543221110
Q ss_pred hhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhc
Q 047861 161 WLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVF 240 (368)
Q Consensus 161 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 240 (368)
.+....+. ..+..+++|++|++++|.+. ..|..+.
T Consensus 169 ------~~~~~~~~-----------~~~~~l~~L~~L~L~~n~l~-~lp~~l~--------------------------- 203 (328)
T 4fcg_A 169 ------PLASTDAS-----------GEHQGLVNLQSLRLEWTGIR-SLPASIA--------------------------- 203 (328)
T ss_dssp ------CSEEEC-C-----------CCEEESTTCCEEEEEEECCC-CCCGGGG---------------------------
T ss_pred ------hHhhccch-----------hhhccCCCCCEEECcCCCcC-cchHhhc---------------------------
Confidence 00000000 01223444555555554444 2233344
Q ss_pred CCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEE
Q 047861 241 GLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSI 320 (368)
Q Consensus 241 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 320 (368)
++++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 204 ~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 4444555555555444 233344444555555555554444444444555555555555554444455445555555555
Q ss_pred ecCCCcCcccchhhHhhhcccccccccEEEccCC
Q 047861 321 DLSFVKLSQDLSQVLDIFSACGAYALESLVLRSC 354 (368)
Q Consensus 321 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 354 (368)
++++|.+.+.+|..+..++ +|+.+++..+
T Consensus 283 ~L~~n~~~~~iP~~l~~L~-----~L~~l~l~~~ 311 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLP-----ANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSC-----TTCEEECCGG
T ss_pred eCCCCCchhhccHHHhhcc-----CceEEeCCHH
Confidence 5555555555555555444 5555554443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.4e-32 Score=263.36 Aligned_cols=289 Identities=21% Similarity=0.194 Sum_probs=187.6
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
..++.+|+++ +.+.+..|..|.++++|++|++++|.+++. .|..+.++++|++|++++|.+++..|..++.
T Consensus 33 ~~l~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSF--------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCEEECTT--------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCcEEEccC--------CccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 4788999998 567777778888888888888888888765 6777888888888888888888877778888
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLK 219 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (368)
+++|++|++++|.+....... +..+++|++|++++|.+...... ....+++|+.|++++|.+.+..+..+..+++|+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSC-CTTCTTCCEEECCSSCCCCCCCC--TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccEeeccccCcccCCcch-hccCCcccEEECCCCcccccCcc--cccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 888888888888877653332 67788888888888877664110 122366777777777766665555555555555
Q ss_pred --eEEccCCCCCCccccc--------------------------------------------------------------
Q 047861 220 --ALDLSQNQFNNSLFQF-------------------------------------------------------------- 235 (368)
Q Consensus 220 --~L~l~~n~l~~~~~~~-------------------------------------------------------------- 235 (368)
.|++++|.+++..+..
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 5555555544322210
Q ss_pred ----------cchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccc
Q 047861 236 ----------GSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQG 305 (368)
Q Consensus 236 ----------~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 305 (368)
...+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 339 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence 002455666777777777666 566666666677777777776665555555566666666666665554
Q ss_pred cCCc-ccccCCCCCEEecCCCcCcccc--hhhHhhhcccccccccEEEccCCcceeccCccccC
Q 047861 306 KIPT-SFVRLCKLTSIDLSFVKLSQDL--SQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366 (368)
Q Consensus 306 ~~~~-~l~~l~~L~~L~l~~n~l~~~~--~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (368)
.++. .+..+++|++|++++|.+++.. +..+..++ +|++|++++|++++..|..+++
T Consensus 340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-----HLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-----TCCEEECCSCSCEEECTTTTTT
T ss_pred ccchhhhhccCcCCEEECCCCccccccCcchhcccCC-----CCCEEECCCCcCCcCCHHHhcC
Confidence 4433 2555555666666665555443 33444444 5555555555555555555443
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=253.03 Aligned_cols=257 Identities=24% Similarity=0.254 Sum_probs=213.0
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.|+|++ +.+.+..|..|.++++|++|++++|.++.. .+..+.++++|++|++++|.+.+..+..+..
T Consensus 56 ~~L~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 56 PHLEELELNE--------NIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCEEECCC--------CccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccc
Confidence 5789999998 577888888999999999999999999854 3456788999999999999999888888999
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLK 219 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (368)
+++|++|++++|.+....... +..+++|++|++++|.+...+.. .+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPTE--ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCHH--HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred cccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccChh--HhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 999999999999877665433 78889999999999988776432 346778888888888887777666666666666
Q ss_pred eEEccC------------------------CCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCC
Q 047861 220 ALDLSQ------------------------NQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLS 275 (368)
Q Consensus 220 ~L~l~~------------------------n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 275 (368)
.|++++ |.+++..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL---AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH---HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHH---HhcCccccCeeECCCCcCCccChhhccccccCCEEECC
Confidence 555555 444433222 57789999999999999987777788999999999999
Q ss_pred CCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccc
Q 047861 276 DNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDL 331 (368)
Q Consensus 276 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 331 (368)
+|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++..+-
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc
Confidence 99999988999999999999999999999766777889999999999999998653
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-31 Score=261.03 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=89.1
Q ss_pred CCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCC-CCChhccCCCC
Q 047861 214 NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNS-AIPGWLSKLND 292 (368)
Q Consensus 214 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~ 292 (368)
.+++|+.|++++|.+++..+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred CCCCCCeeECCCCccCCccCh--hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 334444444444444333220 134555666666666666665555666666666666666666665 25556666677
Q ss_pred CCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccC
Q 047861 293 LEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366 (368)
Q Consensus 293 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (368)
|++|++++|++++..|..+..+++|++|++++|++++..|..+..++ +|++|++++|+++ .+|+.+..
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-----SLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT-----TCCEEECTTSCCC-CEESCGGG
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC-----cCCEEECCCCcCc-ccCHhHhh
Confidence 77777777776666666666777777777777777766666666666 7777777777776 56665544
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-31 Score=258.51 Aligned_cols=124 Identities=23% Similarity=0.260 Sum_probs=87.8
Q ss_pred hcCCCCccEEEccCCcCCCCCC-ccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccccc-CCcccccCCC
Q 047861 239 VFGLHNLVFFDLSGNQFQGKIP-IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGK-IPTSFVRLCK 316 (368)
Q Consensus 239 ~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~ 316 (368)
+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+. +|..+..+++
T Consensus 395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 3444555555555555554444 4556667777777777777666666777777788888887777763 6777778888
Q ss_pred CCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccCC
Q 047861 317 LTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 317 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
|++|++++|.+++..|..+..++ +|++|++++|++++..|..++++
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLH-----RLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCSCEEGGGTTTC
T ss_pred CCEEECCCCcCCccChhhhcccc-----cCCEEECCCCcCCCcCHHHccCC
Confidence 88888888888877777777777 88888888888887778777765
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=3.3e-32 Score=265.54 Aligned_cols=282 Identities=21% Similarity=0.240 Sum_probs=196.2
Q ss_pred CcEEEEecCCCCCCCCCCCccccc-----------------cccccc--CCCCCcEEECCCCCCCCCcCCcccCCCCCCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGK-----------------INLSLV--DFKHLIHLDLSGNDFQGIQIPKYLGSLKNLR 120 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 120 (368)
.+++.|+|++ +.+.+. +|..++ ++++|++|++++|.+.+. +|..++++++|+
T Consensus 206 ~~L~~L~Ls~--------n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 276 (636)
T 4eco_A 206 TKLRQFYMGN--------SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQ 276 (636)
T ss_dssp TTCCEEEEES--------CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCC
T ss_pred cCCCEEECcC--------CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCC
Confidence 5789999999 467775 999998 999999999999999886 999999999999
Q ss_pred EEeCCCCc-ccC-CcchhcCCC------CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCC-CCchhhhhcCCC
Q 047861 121 YLNLSRAN-FAG-VTPYQLGSL------SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLS-KATDWLLVTNSL 191 (368)
Q Consensus 121 ~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~ 191 (368)
+|++++|+ +++ .+|..++.+ ++|++|++++|.+..++....+..+++|++|++++|.+. ..+ .+..+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l 352 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSE 352 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCCC
Confidence 99999998 888 778887766 899999999999886665335888999999999998887 333 23344
Q ss_pred CCCCEEEccCCCCccCCCCCccCCCC-CCeEEccCCCCC-------------------------Cccccccchhc-----
Q 047861 192 SSLKVLNLSYCELHHFPPSSSANFSS-LKALDLSQNQFN-------------------------NSLFQFGSWVF----- 240 (368)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~-------------------------~~~~~~~~~~~----- 240 (368)
++|++|++++|.+. ..|..+..+++ |++|++++|.++ +..|. .+.
T Consensus 353 ~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~~~~~ 428 (636)
T 4eco_A 353 IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGK---NFDPLDPT 428 (636)
T ss_dssp EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTC---SSCTTCSS
T ss_pred CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchh---hhcccccc
Confidence 55555555555555 33333444454 555555555544 33333 232
Q ss_pred --CCCCccEEEccCCcCCCCCCc-cccCCCCCCEEeCCCCcCCCCCChhc-cCC-------CCCCEEEccCCcccccCCc
Q 047861 241 --GLHNLVFFDLSGNQFQGKIPI-GLGNLTFLRHLDLSDNEFNSAIPGWL-SKL-------NDLEFLSLRSNSLQGKIPT 309 (368)
Q Consensus 241 --~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l-------~~L~~L~l~~n~l~~~~~~ 309 (368)
.+++|++|++++|.+. .+|. .+..+++|++|++++|.++ .+|... ... ++|++|++++|+++ .+|.
T Consensus 429 ~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 429 PFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp CCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 3445566666666555 3332 2334566666666666666 333322 211 27777777777777 6666
Q ss_pred ccc--cCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEc------cCCcceeccCccccCC
Q 047861 310 SFV--RLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVL------RSCQFSGHMTNQLGQF 367 (368)
Q Consensus 310 ~l~--~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l------~~n~l~~~~p~~~~~~ 367 (368)
.+. .+++|+.|++++|.+++ +|..+..++ +|++|++ ++|++++.+|..++++
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~-----~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS-----TLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS-----SCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCC-----CCCEEECCCCcccccCcccccChHHHhcC
Confidence 665 77788888888888876 677777666 8888888 4567777888777665
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=8.1e-31 Score=241.43 Aligned_cols=268 Identities=22% Similarity=0.170 Sum_probs=186.2
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
.++.+++++ +.+....+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+
T Consensus 46 ~l~~l~l~~--------~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 46 NQKIVTFKN--------STMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CCSEEEEES--------CEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CceEEEecC--------CchhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 455666666 344443333467888899999988888754 45578888889999998888888877778888
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCe
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKA 220 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (368)
++|++|++++|.+...+.. .+..+++|++|++++|.+...+. ..+..+++|++|++++|.+.+.. +..+++|+.
T Consensus 117 ~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~ 190 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRG-IFHNTPKLTTLSMSNNNLERIED--DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFH 190 (390)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCBCCT--TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSE
T ss_pred CCCCEEECCCCccCcCCHH-HhcCCCCCcEEECCCCccCccCh--hhccCCCCCCEEECCCCcCCccc---cccccccce
Confidence 8899999998887766543 25778888899888888876532 13567888888888888877653 233344444
Q ss_pred EEccCC-------------------CCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCC
Q 047861 221 LDLSQN-------------------QFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNS 281 (368)
Q Consensus 221 L~l~~n-------------------~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 281 (368)
|++++| .++.... ...++|+.|++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~ 262 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRG------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEEC------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccc------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence 444444 3332211 1235677777777777642 456677777777777777777
Q ss_pred CCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCccee
Q 047861 282 AIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSG 358 (368)
Q Consensus 282 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~ 358 (368)
..|..+..+++|++|++++|++++ ++..+..+++|++|++++|.++ .+|..+..++ +|++|++++|++++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~-----~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-----RLENLYLDHNSIVT 332 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHT-----TCSEEECCSSCCCC
T ss_pred cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccC-----cCCEEECCCCccce
Confidence 667777777777777777777763 4555566777777777777777 3555566666 77777777777764
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.8e-31 Score=255.00 Aligned_cols=107 Identities=23% Similarity=0.248 Sum_probs=53.7
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.+|+++ +.+.+..|..+.++++|++|++++|.+++. .|..+.++++|++|++++|+++.. |.. .
T Consensus 21 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~ 88 (520)
T 2z7x_B 21 QKTTILNISQ--------NYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKI-SCH--P 88 (520)
T ss_dssp TTCSEEECCS--------SCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEE-ECC--C
T ss_pred ccccEEECCC--------CcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeec-Ccc--c
Confidence 3455666655 344444444555555555555555555533 344555555555555555555532 322 4
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADL 178 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 178 (368)
+++|++|++++|.+...+.+..+..+++|++|++++|.+
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 555555555555554433323344555555555554444
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.7e-30 Score=251.94 Aligned_cols=295 Identities=20% Similarity=0.172 Sum_probs=190.4
Q ss_pred CCCCCCCCCCCCCCcc----cccEEecCC----C------------CcEEEEecCCCCCCCCCCCcccccccccccCCCC
Q 047861 34 SSRLASWNIGDEDCCA----WGGVVCNNF----T------------GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKH 93 (368)
Q Consensus 34 ~~~~~~w~~~~~~~c~----w~gv~c~~~----~------------~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (368)
...++.|.. +.+||. |.++.|... . ..++.+++++ +.+....+..+..+++
T Consensus 6 ~~~l~~~~~-~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~--------~~l~~lp~~~~~~l~~ 76 (597)
T 3oja_B 6 RYNVKPRQP-EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN--------STMRKLPAALLDSFRQ 76 (597)
T ss_dssp -----CCCS-EECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESS--------CEESEECTHHHHHCCC
T ss_pred cccccCCCC-CCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeC--------CCCCCcCHHHHccCCC
Confidence 345677875 555553 655544310 0 1334555555 4554444445678888
Q ss_pred CcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeC
Q 047861 94 LIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDL 173 (368)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 173 (368)
|++|++++|.+++. .+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+...+.. .+..+++|++|++
T Consensus 77 L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L 154 (597)
T 3oja_B 77 VELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG-IFHNTPKLTTLSM 154 (597)
T ss_dssp CSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEEC
T ss_pred CcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH-HhccCCCCCEEEe
Confidence 88888888888864 556788888888888888888888777788888888888888887766543 2578888888888
Q ss_pred CCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCC-------------------cccc
Q 047861 174 SQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNN-------------------SLFQ 234 (368)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------------------~~~~ 234 (368)
++|.+...+. ..+..+++|+.|++++|.+.+... ..+++|+.|++++|.+++ ....
T Consensus 155 s~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 155 SNNNLERIED--DTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp CSSCCCBCCT--TTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred eCCcCCCCCh--hhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 8888876632 134678888888888888776532 233444444444443332 1111
Q ss_pred ccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccC
Q 047861 235 FGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRL 314 (368)
Q Consensus 235 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 314 (368)
..++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++ +|..+..+
T Consensus 230 ------~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 230 ------VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp ------CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred ------cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 12456666666666653 2456666777777777777766666666777777777777776663 45555566
Q ss_pred CCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceec
Q 047861 315 CKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 315 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~ 359 (368)
++|+.|+|++|.++ .+|..+..++ +|++|++++|++++.
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~-----~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFD-----RLENLYLDHNSIVTL 339 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHT-----TCSEEECCSSCCCCC
T ss_pred CCCcEEECCCCCCC-ccCcccccCC-----CCCEEECCCCCCCCc
Confidence 77777777777766 3555556666 677777777766643
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=4.5e-30 Score=231.12 Aligned_cols=252 Identities=21% Similarity=0.207 Sum_probs=132.2
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 171 (368)
+++++|++++|.+++. .+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+...+.. ..++|++|
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~----~~~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK----MPKTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS----CCTTCCEE
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh----hcccccEE
Confidence 4555566666555543 333455556666666666655555555555556666666666555544321 12456666
Q ss_pred eCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCcc--CCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEE
Q 047861 172 DLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHH--FPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFD 249 (368)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 249 (368)
++++|.+...+. ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++..... + .++|++|+
T Consensus 127 ~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~----~--~~~L~~L~ 198 (330)
T 1xku_A 127 RVHENEITKVRK--SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----L--PPSLTELH 198 (330)
T ss_dssp ECCSSCCCBBCH--HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS----C--CTTCSEEE
T ss_pred ECCCCcccccCH--hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc----c--cccCCEEE
Confidence 666555554422 123455556666666555532 3444455555666666666555532211 1 14556666
Q ss_pred ccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcc
Q 047861 250 LSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 250 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc
Confidence 6666555444555555566666666666555544445555556666666666555 455555555566666666665555
Q ss_pred cchhhHhhhc-ccccccccEEEccCCcce
Q 047861 330 DLSQVLDIFS-ACGAYALESLVLRSCQFS 357 (368)
Q Consensus 330 ~~~~~l~~~~-~~~~~~L~~L~l~~n~l~ 357 (368)
..+..+.... ......|+.|++++|.+.
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cChhhcCCcccccccccccceEeecCccc
Confidence 4433332210 011225555666665543
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.1e-31 Score=265.96 Aligned_cols=294 Identities=22% Similarity=0.178 Sum_probs=188.0
Q ss_pred cccccEEecCCCCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCC
Q 047861 48 CAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRA 127 (368)
Q Consensus 48 c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 127 (368)
+.|..|.+ ...+++.|||++ +.+.+..|..|.++++|++|++++|...+.-.|..+.++++|++|+|++|
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~--------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF--------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES--------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred CCCCCCCC--CCCCcCEEECCC--------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45666665 456788999988 46777777778888888888888875544312667778888888888888
Q ss_pred cccCCcchhcCCCCCCCEEeCCCCcCCcc-cchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCcc
Q 047861 128 NFAGVTPYQLGSLSNLQYLDLSQNYLLQV-ESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHH 206 (368)
Q Consensus 128 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 206 (368)
.+.+..|..+.++++|++|++++|.+... +...++..+++|++|++++|.+..... ...+..+++|++|++++|.+.+
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCe
Confidence 88777777788888888888888876652 223346777888888888877765521 1134677777777777777766
Q ss_pred CCCCCccCC--CC------------------------------CCeEEccCCCCCCccccccc-----------------
Q 047861 207 FPPSSSANF--SS------------------------------LKALDLSQNQFNNSLFQFGS----------------- 237 (368)
Q Consensus 207 ~~~~~~~~~--~~------------------------------L~~L~l~~n~l~~~~~~~~~----------------- 237 (368)
..+..+..+ ++ |+.|++++|.+++..+....
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 555444433 34 55555555544332221000
Q ss_pred ----------------hhcC--CCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEcc
Q 047861 238 ----------------WVFG--LHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLR 299 (368)
Q Consensus 238 ----------------~~~~--~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 299 (368)
.+.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 243 ~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 322 (844)
T 3j0a_A 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLS 322 (844)
T ss_dssp CBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEE
T ss_pred ccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECC
Confidence 0001 1456666666666655555556666666666666666666556666666666666666
Q ss_pred CCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcce
Q 047861 300 SNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFS 357 (368)
Q Consensus 300 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~ 357 (368)
+|.+++..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.++
T Consensus 323 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-----KLQTLDLRDNALT 375 (844)
T ss_dssp SCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-----CCCEEEEETCCSC
T ss_pred CCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC-----CCCEEECCCCCCC
Confidence 6666655566666666666666666666655555555555 6667777666665
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.1e-31 Score=256.20 Aligned_cols=170 Identities=24% Similarity=0.299 Sum_probs=138.4
Q ss_pred CcccccEEecCC-----------CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCC
Q 047861 47 CCAWGGVVCNNF-----------TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGS 115 (368)
Q Consensus 47 ~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 115 (368)
.|.|.|+ |+.. ..+++.+|+++ +.+.+..|..+.++++|++|++++|.+++. .+..+..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------NKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC--------CccCccChhhhhcCCcccEEECCCCCcCcc-Chhhccc
Confidence 4788877 6421 24789999999 578888888999999999999999999975 6678999
Q ss_pred CCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCC-CCCchhhhhcCCCCCC
Q 047861 116 LKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADL-SKATDWLLVTNSLSSL 194 (368)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L 194 (368)
+++|++|++++|.+++..+..++.+++|++|++++|.+...+.+..+..+++|++|++++|.+ ...+. ..+..+++|
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~--~~~~~l~~L 150 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR--IDFAGLTSL 150 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTTTCCEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH--hhhhccccc
Confidence 999999999999999998888999999999999999988665445589999999999999984 33321 245789999
Q ss_pred CEEEccCCCCccCCCCCccCCCCCCeEEccCCCC
Q 047861 195 KVLNLSYCELHHFPPSSSANFSSLKALDLSQNQF 228 (368)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 228 (368)
++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 9999999999988777776665555555555544
No 22
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.7e-30 Score=232.70 Aligned_cols=260 Identities=20% Similarity=0.192 Sum_probs=184.3
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 171 (368)
++|++|++++|.++.. .+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+...+.. ..++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN----LPSSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS----CCTTCCEE
T ss_pred CCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc----ccccCCEE
Confidence 5778888888877754 455677788888888888888777777778888888888888877665532 12678888
Q ss_pred eCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCcc--CCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEE
Q 047861 172 DLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHH--FPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFD 249 (368)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 249 (368)
++++|.+...+.. .+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.+++.... + .++|++|+
T Consensus 129 ~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~ 199 (332)
T 2ft3_A 129 RIHDNRIRKVPKG--VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELH 199 (332)
T ss_dssp ECCSSCCCCCCSG--GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCB
T ss_pred ECCCCccCccCHh--HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEE
Confidence 8888877765431 34677888888888887753 555666666 788888888877753222 2 25778888
Q ss_pred ccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcc
Q 047861 250 LSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 250 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++
T Consensus 200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence 8888887666677777888888888888887766667777888888888888777 677777788888888888888876
Q ss_pred cchhhHhhhc-ccccccccEEEccCCcce--eccCccccC
Q 047861 330 DLSQVLDIFS-ACGAYALESLVLRSCQFS--GHMTNQLGQ 366 (368)
Q Consensus 330 ~~~~~l~~~~-~~~~~~L~~L~l~~n~l~--~~~p~~~~~ 366 (368)
..+..+.... .....+|+.|++++|.++ +..|..|..
T Consensus 279 ~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred cChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 6555554321 111336778888888776 445555544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=9.4e-31 Score=252.26 Aligned_cols=109 Identities=21% Similarity=0.217 Sum_probs=89.0
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
..++.+|+++ +.+.+..+..+.++++|++|++++|.+++. .|..+..+++|++|++++|.++.. |.. .
T Consensus 52 ~~L~~L~Ls~--------N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~ 119 (562)
T 3a79_B 52 PRTKALSLSQ--------NSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNI-SCC--P 119 (562)
T ss_dssp TTCCEEECCS--------SCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEE-CSC--C
T ss_pred CCcCEEECCC--------CCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCcc-Ccc--c
Confidence 5788889888 567777778889999999999999988865 577888899999999999988854 544 7
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSK 180 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 180 (368)
+++|++|++++|.+...+.+..+..+++|++|++++|.+..
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 88999999999988776655558888888888888887764
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.4e-31 Score=239.02 Aligned_cols=234 Identities=23% Similarity=0.313 Sum_probs=205.6
Q ss_pred CCCcEEECCCCCCCC--CcCCcccCCCCCCCEEeCCC-CcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCC
Q 047861 92 KHLIHLDLSGNDFQG--IQIPKYLGSLKNLRYLNLSR-ANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLL 168 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~--~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 168 (368)
.++++|+++++.+++ . +|..+.++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.....
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---------- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP---------- 118 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC----------
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC----------
Confidence 578899999999886 5 788889999999999985 88888888888888888888888887653221
Q ss_pred CEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCC-CccE
Q 047861 169 EHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLH-NLVF 247 (368)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-~L~~ 247 (368)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|. .+..++ +|++
T Consensus 119 -----------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~ 178 (313)
T 1ogq_A 119 -----------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTS 178 (313)
T ss_dssp -----------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCE
T ss_pred -----------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcE
Confidence 1345677888888888888888888899999999999999999987777 788887 9999
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcC
Q 047861 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKL 327 (368)
Q Consensus 248 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 327 (368)
|++++|.+.+.+|..+..++ |++|++++|.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.+
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 99999999988999998887 99999999999988999999999999999999999876665 78899999999999999
Q ss_pred cccchhhHhhhcccccccccEEEccCCcceeccCcc
Q 047861 328 SQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQ 363 (368)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~ 363 (368)
++.+|..+..++ +|++|++++|+++|.+|+.
T Consensus 257 ~~~~p~~l~~l~-----~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 257 YGTLPQGLTQLK-----FLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCCGGGGGCT-----TCCEEECCSSEEEEECCCS
T ss_pred cCcCChHHhcCc-----CCCEEECcCCcccccCCCC
Confidence 999999999888 9999999999999999986
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.7e-30 Score=230.10 Aligned_cols=263 Identities=24% Similarity=0.289 Sum_probs=220.5
Q ss_pred CCCcEEECCCCCCCCCcCCc-ccCCCCCCCEEeCCCCcccCC--cchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCC
Q 047861 92 KHLIHLDLSGNDFQGIQIPK-YLGSLKNLRYLNLSRANFAGV--TPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLL 168 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 168 (368)
++|++|++++|.++. +|. .+.++++|++|++++|.++.. .+..+..+++|++|++++|.+...+.. +..+++|
T Consensus 28 ~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~--~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE--EETCTTC
T ss_pred CCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh--cCCCCCC
Confidence 689999999999984 444 478999999999999988743 356667799999999999998765543 7889999
Q ss_pred CEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCC-ccccccchhcCCCCccE
Q 047861 169 EHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNN-SLFQFGSWVFGLHNLVF 247 (368)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~~L~~ 247 (368)
++|++++|.+...+.. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..+. .+..+++|++
T Consensus 104 ~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~ 179 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTF 179 (306)
T ss_dssp CEEECTTSEEESSTTT-TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCE
T ss_pred CEEECCCCcccccccc-hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCCE
Confidence 9999999988766431 245788999999999999999888889999999999999999876 3455 6888999999
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCC-CCCEEecCCCc
Q 047861 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLC-KLTSIDLSFVK 326 (368)
Q Consensus 248 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~ 326 (368)
|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++ +|++|++++|.
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999977788899999999999999999987777889999999999999999988999999885 99999999999
Q ss_pred Ccccch--hhHhhhcccccccccEEEccCCcceeccCccccCC
Q 047861 327 LSQDLS--QVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 327 l~~~~~--~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
+++.-. .....+. ..+.+.+..+.+....|+.+.+.
T Consensus 260 ~~~~c~~~~~~~~l~-----~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 260 FACTCEHQSFLQWIK-----DQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp EECSGGGHHHHHHHH-----HTGGGBSCGGGCBEEESGGGTTC
T ss_pred eecccChHHHHHHHH-----hhhhhhccccccccCCchhhCCc
Confidence 987532 2223333 55666777788888889888764
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=7.8e-31 Score=260.97 Aligned_cols=281 Identities=16% Similarity=0.181 Sum_probs=197.7
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCC-CCCCcCCcccCC-------CCCCCEEeCCCCcccC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGND-FQGIQIPKYLGS-------LKNLRYLNLSRANFAG 131 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~-------l~~L~~L~l~~~~~~~ 131 (368)
.+++.|+|++ +.+.+.+|..+.++++|++|++++|. +++..+|..+++ +++|++|++++|.++
T Consensus 491 ~~L~~L~Ls~--------N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 491 KDLTDVELYN--------CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp TTCCEEEEES--------CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred CCCCEEECcC--------CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 4678888888 56788888888888888888888887 775115654444 348888888888887
Q ss_pred Ccch--hcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCC-CCEEEccCCCCccCC
Q 047861 132 VTPY--QLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSS-LKVLNLSYCELHHFP 208 (368)
Q Consensus 132 ~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~ 208 (368)
.+|. .+.++++|++|++++|.+..++ .+..+++|++|++++|.+...+. .+..+++ |+.|++++|.+.. .
T Consensus 562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~---~l~~l~~~L~~L~Ls~N~L~~-l 634 (876)
T 4ecn_A 562 EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPE---DFCAFTDQVEGLGFSHNKLKY-I 634 (876)
T ss_dssp BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCT---TSCEECTTCCEEECCSSCCCS-C
T ss_pred ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchH---HHhhccccCCEEECcCCCCCc-C
Confidence 5566 7888888888888888877554 37777888888888877774443 3455666 7777777777663 3
Q ss_pred CCCccCCC--CCCeEEccCCCCCCcccccc-------------------------c-hhcCCCCccEEEccCCcCCCCCC
Q 047861 209 PSSSANFS--SLKALDLSQNQFNNSLFQFG-------------------------S-WVFGLHNLVFFDLSGNQFQGKIP 260 (368)
Q Consensus 209 ~~~~~~~~--~L~~L~l~~n~l~~~~~~~~-------------------------~-~~~~~~~L~~L~l~~n~l~~~~~ 260 (368)
|..+...+ +|+.|++++|.+++.++.+. . .+..+++|+.|++++|.+. .+|
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 34443332 25555555555544332211 0 2335677777777777776 555
Q ss_pred ccccCC--------CCCCEEeCCCCcCCCCCChhcc--CCCCCCEEEccCCcccccCCcccccCCCCCEEecCC------
Q 047861 261 IGLGNL--------TFLRHLDLSDNEFNSAIPGWLS--KLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSF------ 324 (368)
Q Consensus 261 ~~l~~l--------~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~------ 324 (368)
..+... ++|+.|+|++|.++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 443322 27888888888887 5677776 78888888888888885 787888888888888865
Q ss_pred CcCcccchhhHhhhcccccccccEEEccCCcceeccCcccc
Q 047861 325 VKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLG 365 (368)
Q Consensus 325 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (368)
|.+.+.+|..+..++ +|++|+|++|++ +.+|..+.
T Consensus 792 N~l~~~ip~~l~~L~-----~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 792 NRILRQWPTGITTCP-----SLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CBCCCCCCTTGGGCS-----SCCEEECCSSCC-CBCCSCCC
T ss_pred ccccccChHHHhcCC-----CCCEEECCCCCC-CccCHhhc
Confidence 677778888888777 888888888888 68887654
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=247.44 Aligned_cols=104 Identities=22% Similarity=0.203 Sum_probs=85.9
Q ss_pred CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccC-Ccchhc
Q 047861 59 TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAG-VTPYQL 137 (368)
Q Consensus 59 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~l 137 (368)
-.+++.+++++ +.+.+..|..|.++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..+
T Consensus 44 l~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 44 LSKLRILIISH--------NRIQYLDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp CTTCCEEECCS--------SCCCEEEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred cccccEEecCC--------CccCCcChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhhh
Confidence 35789999999 5788888999999999999999999998 46666 79999999999999987 467899
Q ss_pred CCCCCCCEEeCCCCcCCcccchhhhcCCCCC--CEEeCCCCCC
Q 047861 138 GSLSNLQYLDLSQNYLLQVESFSWLSGLSLL--EHLDLSQADL 178 (368)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 178 (368)
+.+++|++|++++|.+.... +..+++| ++|++++|.+
T Consensus 112 ~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 112 GNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp GGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred ccCCcceEEEecCcccchhh----ccccccceeeEEEeecccc
Confidence 99999999999999876532 4555555 7777666655
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.2e-29 Score=225.75 Aligned_cols=263 Identities=24% Similarity=0.334 Sum_probs=202.2
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.++++++ .+.+. +. +..+++|++|++++|.++. + +.+..+++|++|++++|.+.+..+ +..
T Consensus 66 ~~L~~L~l~~n--------~i~~~-~~-~~~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~ 130 (347)
T 4fmz_A 66 TNLEYLNLNGN--------QITDI-SP-LSNLVKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISDISP--LAN 130 (347)
T ss_dssp TTCCEEECCSS--------CCCCC-GG-GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCCCGG--GTT
T ss_pred CCccEEEccCC--------ccccc-hh-hhcCCcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccCchh--hcc
Confidence 45777777773 44433 22 7778888888888887774 3 357778888888888888776533 777
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLK 219 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (368)
+++|++|++++|........ +..+++|++|++++|.+...+. +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 131 l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 202 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP--LASLTSLH 202 (347)
T ss_dssp CTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG--GGGCTTCC
T ss_pred CCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc--ccCCCccc
Confidence 88888888888854333222 7788888888888887776643 4567888888888888776544 66778888
Q ss_pred eEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEcc
Q 047861 220 ALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLR 299 (368)
Q Consensus 220 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 299 (368)
.+++++|.+++..+ +..+++|++|++++|.+.+. +. +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 203 ~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 203 YFTAYVNQITDITP-----VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVG 273 (347)
T ss_dssp EEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred eeecccCCCCCCch-----hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEcc
Confidence 88888888775432 56788999999999988844 33 78889999999999988763 467888999999999
Q ss_pred CCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccC
Q 047861 300 SNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMT 361 (368)
Q Consensus 300 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (368)
+|.+++. ..+..+++|+.|++++|.+++..+..+..++ +|++|++++|++++..|
T Consensus 274 ~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~-----~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 274 SNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-----NLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT-----TCSEEECCSSSCCCCGG
T ss_pred CCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccc-----cCCEEEccCCccccccC
Confidence 9988853 4578899999999999999988888888888 99999999999987655
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=5.1e-30 Score=252.75 Aligned_cols=280 Identities=23% Similarity=0.212 Sum_probs=136.1
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.|+++++ .+.+..+..|.++++|++|++++|.+++. .|..++++++|++|++++|.+++..+..+++
T Consensus 25 ~~l~~L~Ls~n--------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHN--------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSS--------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 46777777773 44444444555555566666555555543 4445555555555555555555543334555
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCcc--CCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSA--NFSS 217 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~ 217 (368)
+++|++|++++|.+...+.. .+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+..+. .+++
T Consensus 96 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSC-TTTTCTTCCEEECCSSCCSCCCC--CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred CCCCCEEECCCCccCccChh-HccccCCCCEEECCCCcccccCc--hhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence 55555555555554443322 14455555555555555443311 1223445555555555554444333221 2344
Q ss_pred CCeEEccCCCCCCccccccc------------------------------------------------hhcCCCC--ccE
Q 047861 218 LKALDLSQNQFNNSLFQFGS------------------------------------------------WVFGLHN--LVF 247 (368)
Q Consensus 218 L~~L~l~~n~l~~~~~~~~~------------------------------------------------~~~~~~~--L~~ 247 (368)
|+.|++++|.+++..+.... .+..++. |++
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCE
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCE
Confidence 55555554444433322000 2223222 555
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccc-----cCCc----ccccCCCCC
Q 047861 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQG-----KIPT----SFVRLCKLT 318 (368)
Q Consensus 248 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~----~l~~l~~L~ 318 (368)
|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|...+ .+|. .+..+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 5555555444444444445555555555555544444444555555555555443221 1121 344455555
Q ss_pred EEecCCCcCcccchhhHhhhcccccccccEEEccCCcc
Q 047861 319 SIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQF 356 (368)
Q Consensus 319 ~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l 356 (368)
+|++++|.+++..+..+..++ +|++|++++|.+
T Consensus 333 ~L~l~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 333 HLNMEDNDIPGIKSNMFTGLI-----NLKYLSLSNSFT 365 (680)
T ss_dssp EEECCSCCBCCCCTTTTTTCT-----TCCEEECTTCBS
T ss_pred EEECCCCccCCCChhHhcccc-----CCcEEECCCCch
Confidence 555555555555554455444 566666665543
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.4e-29 Score=228.02 Aligned_cols=283 Identities=20% Similarity=0.250 Sum_probs=232.4
Q ss_pred CcccccEEecCC---------CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCC
Q 047861 47 CCAWGGVVCNNF---------TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLK 117 (368)
Q Consensus 47 ~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 117 (368)
.|.|+.+.|... ...++.+++++ +.+.+..|..+.++++|++|++++|.+++. .|..+.+++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 102 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQN--------NDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLR 102 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCS--------SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCT
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCC--------CcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcC
Confidence 378999988632 24688999998 577777788899999999999999999965 678899999
Q ss_pred CCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEE
Q 047861 118 NLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVL 197 (368)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 197 (368)
+|++|++++|.++.. |..+. ++|++|++++|.+...+.. .+..+++|++|++++|.+.........+..+ +|+.|
T Consensus 103 ~L~~L~L~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 103 KLQKLYISKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKG-VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL 177 (332)
T ss_dssp TCCEEECCSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSG-GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC
T ss_pred CCCEEECCCCcCCcc-Ccccc--ccCCEEECCCCccCccCHh-HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE
Confidence 999999999999865 54444 8999999999998876643 3789999999999999986432222244555 99999
Q ss_pred EccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCC
Q 047861 198 NLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDN 277 (368)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 277 (368)
++++|.+.+.+... .++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 178 ~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~---~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 178 RISEAKLTGIPKDL---PETLNELHLDHNKIQAIELE---DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp BCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTT---SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred ECcCCCCCccCccc---cCCCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 99999998865432 27999999999999987666 7889999999999999999777778999999999999999
Q ss_pred cCCCCCChhccCCCCCCEEEccCCcccccCCccccc------CCCCCEEecCCCcCc--ccchhhHhhhcccccccccEE
Q 047861 278 EFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVR------LCKLTSIDLSFVKLS--QDLSQVLDIFSACGAYALESL 349 (368)
Q Consensus 278 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~~l~~~~~~~~~~L~~L 349 (368)
.++ .+|..+..+++|++|++++|++++..+..+.. ...|+.|++++|++. +..+..+..++ +|+.+
T Consensus 252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~-----~L~~l 325 (332)
T 2ft3_A 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT-----DRLAI 325 (332)
T ss_dssp CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC-----CSTTE
T ss_pred cCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc-----hhhhh
Confidence 998 67888999999999999999999665555544 467999999999987 55667777777 99999
Q ss_pred EccCCc
Q 047861 350 VLRSCQ 355 (368)
Q Consensus 350 ~l~~n~ 355 (368)
++++|+
T Consensus 326 ~l~~n~ 331 (332)
T 2ft3_A 326 QFGNYK 331 (332)
T ss_dssp EC----
T ss_pred hccccc
Confidence 999985
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=249.02 Aligned_cols=124 Identities=27% Similarity=0.334 Sum_probs=74.8
Q ss_pred hcCCCCccEEEccCCcCCCCCC-ccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc-ccCCcccccCCC
Q 047861 239 VFGLHNLVFFDLSGNQFQGKIP-IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ-GKIPTSFVRLCK 316 (368)
Q Consensus 239 ~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~ 316 (368)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. +.+|..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 3344455555555555443333 34555666666666666666555666666666666666666665 356666666666
Q ss_pred CCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccCC
Q 047861 317 LTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 317 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
|+.|++++|.+++..|..+..++ +|++|++++|++++..|..|.++
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCSCCCTTTTTTC
T ss_pred CCEEECCCCccccCChhhhhccc-----CCCEEeCCCCcCCCCCHHHhhcc
Confidence 66666666666666566666555 66666666666665555555443
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.6e-29 Score=249.25 Aligned_cols=205 Identities=23% Similarity=0.177 Sum_probs=122.8
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.+|+++ +.+.+..|..+.++++|++|++++|.++.. .+..+.++++|++|++++|.+++..+..+++
T Consensus 49 ~~L~~L~Ls~--------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 119 (680)
T 1ziw_A 49 SQLTSLDVGF--------NTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119 (680)
T ss_dssp TTCSEEECCS--------SCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTT
T ss_pred CcCcEEECCC--------CccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccc
Confidence 3567777777 345555555666666666666666666532 2224566666666666666666555555666
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCC----------------------------
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSL---------------------------- 191 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~---------------------------- 191 (368)
+++|++|++++|.+...... .+..+++|++|++++|.+...+........+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred cCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 66666666666655443322 1445555555555555554442221111122
Q ss_pred -----------------------CCCCEEEccCCCCccCCCCCccCCC--CCCeEEccCCCCCCccccccchhcCCCCcc
Q 047861 192 -----------------------SSLKVLNLSYCELHHFPPSSSANFS--SLKALDLSQNQFNNSLFQFGSWVFGLHNLV 246 (368)
Q Consensus 192 -----------------------~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 246 (368)
++|+.|++++|.+.+..+..+..++ +|+.|++++|.+++..+. .+..+++|+
T Consensus 199 ~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~ 275 (680)
T 1ziw_A 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND---SFAWLPQLE 275 (680)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT---TTTTCTTCC
T ss_pred hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc---cccCccccc
Confidence 3455555555555555555555554 389999999988876666 788999999
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEeCCCC
Q 047861 247 FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDN 277 (368)
Q Consensus 247 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 277 (368)
+|++++|.+.+..+..+..+++|++|++++|
T Consensus 276 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp EEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred EeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 9999999887666655555555555555443
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=5.5e-30 Score=247.41 Aligned_cols=291 Identities=22% Similarity=0.298 Sum_probs=192.2
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
.++.||+++ +.+.+..+..|.++++|++|++++|.++.. .+..+..+++|++|++++|++++..+..++.+
T Consensus 53 ~L~~L~Ls~--------n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 53 ELQVLDLSR--------CEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp SCCEEECTT--------CCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred CceEEECCC--------CcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCcccccc
Confidence 455556655 455555566677777777777777777654 44667777777777777777776655567777
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCch-hhhh--------------------------------
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATD-WLLV-------------------------------- 187 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~-------------------------------- 187 (368)
++|++|++++|.+.....+..+.++++|++|++++|.+...+. ....
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~ 203 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcce
Confidence 8888888888877664444457778888888888776654311 0000
Q ss_pred --------------------------------------------------------------------------cCCCCC
Q 047861 188 --------------------------------------------------------------------------TNSLSS 193 (368)
Q Consensus 188 --------------------------------------------------------------------------~~~~~~ 193 (368)
+..+++
T Consensus 204 ~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~ 283 (570)
T 2z63_A 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283 (570)
T ss_dssp EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTT
T ss_pred eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCc
Confidence 011233
Q ss_pred CCEEEccCCCCccCCCCCc------------------------------------------cCCCCCCeEEccCCCCCCc
Q 047861 194 LKVLNLSYCELHHFPPSSS------------------------------------------ANFSSLKALDLSQNQFNNS 231 (368)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~------------------------------------------~~~~~L~~L~l~~n~l~~~ 231 (368)
|+.|++++|.+... +..+ ..+++|++|++++|.+++.
T Consensus 284 L~~L~l~~~~l~~l-~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 284 VSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp CSEEEEESCEECSC-CBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccEEEecCccchhh-hhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcc
Confidence 44444444433321 1111 1233444444444444322
Q ss_pred cccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCC-hhccCCCCCCEEEccCCcccccCCcc
Q 047861 232 LFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIP-GWLSKLNDLEFLSLRSNSLQGKIPTS 310 (368)
Q Consensus 232 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~ 310 (368)
. .....+..+++|++|++++|.+.+ ++..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|..
T Consensus 363 ~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 440 (570)
T 2z63_A 363 G-CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440 (570)
T ss_dssp E-EEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred c-cccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh
Confidence 1 001145566667777777776653 33347778888888888888776544 46778889999999999888888888
Q ss_pred cccCCCCCEEecCCCcCc-ccchhhHhhhcccccccccEEEccCCcceeccCccccCCC
Q 047861 311 FVRLCKLTSIDLSFVKLS-QDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQFK 368 (368)
Q Consensus 311 l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (368)
+..+++|++|++++|.++ +.+|..+..++ +|++|++++|++++..|..|++++
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhcCCcCcEEECcCCcCccccchhhhhccc-----CCCEEECCCCccccCChhhhhccc
Confidence 889999999999999987 56777777777 999999999999988888887653
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.5e-29 Score=224.00 Aligned_cols=285 Identities=20% Similarity=0.245 Sum_probs=233.1
Q ss_pred CCcccccEEecCC---------CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCC
Q 047861 46 DCCAWGGVVCNNF---------TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSL 116 (368)
Q Consensus 46 ~~c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 116 (368)
..|.|+.+.|... ...++.+++++ +.+.+..+..+.++++|++|++++|.+++. .|..+..+
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 99 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN--------NKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPL 99 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCS--------SCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCC--------CcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCC
Confidence 3478888888632 24688899998 577777777899999999999999999975 68889999
Q ss_pred CCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCE
Q 047861 117 KNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKV 196 (368)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 196 (368)
++|++|++++|.++.. |..+. ++|++|++++|.+...+.. .+..+++|++|++++|.+.........+..+++|++
T Consensus 100 ~~L~~L~Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 100 VKLERLYLSKNQLKEL-PEKMP--KTLQELRVHENEITKVRKS-VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp TTCCEEECCSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHH-HHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCEEECCCCcCCcc-Chhhc--ccccEEECCCCcccccCHh-HhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 9999999999999865 54443 8999999999998876543 378999999999999998753223335678999999
Q ss_pred EEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCC
Q 047861 197 LNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSD 276 (368)
Q Consensus 197 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 276 (368)
|++++|.+...+... .++|++|++++|.+++..+. .+.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 176 L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 176 IRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp EECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTG---GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred EECCCCccccCCccc---cccCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 999999998765433 27999999999999877666 788999999999999999877777888999999999999
Q ss_pred CcCCCCCChhccCCCCCCEEEccCCcccccCCccccc------CCCCCEEecCCCcCcc--cchhhHhhhcccccccccE
Q 047861 277 NEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVR------LCKLTSIDLSFVKLSQ--DLSQVLDIFSACGAYALES 348 (368)
Q Consensus 277 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~l~~~~~~~~~~L~~ 348 (368)
|.++ .+|..+..+++|++|++++|++++..+..+.. .+.++.|++++|++.. ..|..+..+. +++.
T Consensus 250 N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~-----~l~~ 323 (330)
T 1xku_A 250 NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY-----VRAA 323 (330)
T ss_dssp SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC-----CGGG
T ss_pred CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc-----ceeE
Confidence 9998 67888999999999999999998655555532 4789999999999864 4455666666 9999
Q ss_pred EEccCCc
Q 047861 349 LVLRSCQ 355 (368)
Q Consensus 349 L~l~~n~ 355 (368)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 9999985
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=4.5e-29 Score=229.76 Aligned_cols=272 Identities=19% Similarity=0.215 Sum_probs=216.3
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.+++++ +.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.++...+..+..
T Consensus 69 ~~L~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 139 (390)
T 3o6n_A 69 RQVELLNLND--------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139 (390)
T ss_dssp CCCSEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCcEEECCC--------CcccccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHhcC
Confidence 4688899988 567776677889999999999999998865 5677888999999999999988775555688
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhh-h-------------hcCCCCCCCEEEccCCCCc
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWL-L-------------VTNSLSSLKVLNLSYCELH 205 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~-------------~~~~~~~L~~L~l~~~~~~ 205 (368)
+++|++|++++|.+...+.. .+..+++|++|++++|.+...+... . .+...++|++|++++|.+.
T Consensus 140 l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp CTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 99999999999987766543 3788899999999998887652100 0 0012234555555555555
Q ss_pred cCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCh
Q 047861 206 HFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPG 285 (368)
Q Consensus 206 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 285 (368)
..... ..++|+.|++++|.+++. . .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ++.
T Consensus 219 ~~~~~---~~~~L~~L~l~~n~l~~~--~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~ 289 (390)
T 3o6n_A 219 VVRGP---VNVELTILKLQHNNLTDT--A---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNL 289 (390)
T ss_dssp EEECC---CCSSCCEEECCSSCCCCC--G---GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EEC
T ss_pred ecccc---ccccccEEECCCCCCccc--H---HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCc
Confidence 44322 246899999999999864 2 67899999999999999998888899999999999999999986 455
Q ss_pred hccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceec
Q 047861 286 WLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 286 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~ 359 (368)
....+++|++|++++|++. .+|..+..+++|+.|++++|.+++.. +..++ +|++|++++|+++..
T Consensus 290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~-----~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH-----TLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC-----CCSEEECCSSCEEHH
T ss_pred ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhc-----cCCEEEcCCCCccch
Confidence 6678999999999999998 67878889999999999999998642 44455 999999999998754
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.6e-29 Score=243.73 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=114.2
Q ss_pred EEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCC
Q 047861 63 LQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSN 142 (368)
Q Consensus 63 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (368)
+.+|+++ +.+++ +|..+. ++|++|++++|.+++. .+..+.++++|++|++++|.+++..|..+..+++
T Consensus 34 ~~l~ls~--------~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 34 SMVDYSN--------RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp CEEECTT--------SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cEEEcCC--------CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 6889988 45554 666554 8999999999999965 5678999999999999999999998899999999
Q ss_pred CCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCC--Ce
Q 047861 143 LQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSL--KA 220 (368)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~ 220 (368)
|++|++++|.+..++.. .+++|++|++++|.+...+ .+..+..+++|++|++++|.+.... +..+++| ++
T Consensus 102 L~~L~Ls~N~l~~lp~~----~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~ 173 (562)
T 3a79_B 102 LEYLDVSHNRLQNISCC----PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSC 173 (562)
T ss_dssp CCEEECTTSCCCEECSC----CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEE
T ss_pred CCEEECCCCcCCccCcc----ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccCc---hhhhhhceeeE
Confidence 99999999999877643 8999999999999997753 1125567889999999988876532 2222333 55
Q ss_pred EEccCCCC
Q 047861 221 LDLSQNQF 228 (368)
Q Consensus 221 L~l~~n~l 228 (368)
|++++|.+
T Consensus 174 L~L~~n~l 181 (562)
T 3a79_B 174 ILLDLVSY 181 (562)
T ss_dssp EEEEESSC
T ss_pred EEeecccc
Confidence 55554444
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-29 Score=253.49 Aligned_cols=282 Identities=20% Similarity=0.167 Sum_probs=230.0
Q ss_pred CcEEEEecCCCCCCCCCCCcccccc-cccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchh--
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKI-NLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQ-- 136 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-- 136 (368)
.+++.|||++ +...+.+ |..|.++++|++|+|++|.+.+. .|..++++++|++|++++|.+++.++..
T Consensus 48 ~~L~~LdLs~--------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 48 EQLQLLELGS--------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp CSCSEEEECT--------TCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred ccCeEEeCCC--------CCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 5688999998 4455666 77899999999999999999875 6889999999999999999998865654
Q ss_pred cCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCC-chhhhh-----------------------cCCCC
Q 047861 137 LGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKA-TDWLLV-----------------------TNSLS 192 (368)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~-----------------------~~~~~ 192 (368)
+.++++|++|++++|.+........+.++++|++|++++|.+... +..... +..++
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~ 198 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcC
Confidence 889999999999999988776555689999999999999988654 111111 11112
Q ss_pred ------CCCEEEccCCCCccCCCCCcc------------------------------------C--CCCCCeEEccCCCC
Q 047861 193 ------SLKVLNLSYCELHHFPPSSSA------------------------------------N--FSSLKALDLSQNQF 228 (368)
Q Consensus 193 ------~L~~L~l~~~~~~~~~~~~~~------------------------------------~--~~~L~~L~l~~n~l 228 (368)
.|+.|++++|.+.+..+..+. . .++|+.|++++|.+
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 388888888866544332221 1 26899999999999
Q ss_pred CCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCC
Q 047861 229 NNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIP 308 (368)
Q Consensus 229 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 308 (368)
++..+. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 279 ~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 279 FSLNSR---VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp CEECSC---CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred cccChh---hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 877666 78899999999999999998788889999999999999999998888899999999999999999987777
Q ss_pred cccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccc
Q 047861 309 TSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQL 364 (368)
Q Consensus 309 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (368)
..+..+++|+.|++++|.+++.. .++ +|+.|++++|+++ .+|...
T Consensus 356 ~~~~~l~~L~~L~Ls~N~l~~i~-----~~~-----~L~~L~l~~N~l~-~l~~~~ 400 (844)
T 3j0a_A 356 QTFKFLEKLQTLDLRDNALTTIH-----FIP-----SIPDIFLSGNKLV-TLPKIN 400 (844)
T ss_dssp SCSCSCCCCCEEEEETCCSCCCS-----SCC-----SCSEEEEESCCCC-CCCCCC
T ss_pred hhhcCCCCCCEEECCCCCCCccc-----CCC-----CcchhccCCCCcc-cccccc
Confidence 78999999999999999998522 144 8999999999988 677653
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.5e-28 Score=220.32 Aligned_cols=267 Identities=24% Similarity=0.377 Sum_probs=224.7
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
..++.++++++ .+.. ++ .+..+++|++|++++|.++. ++. +..+++|++|++++|.++.. ..+..
T Consensus 44 ~~L~~L~l~~~--------~i~~-~~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~ 108 (347)
T 4fmz_A 44 ESITKLVVAGE--------KVAS-IQ-GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITDI--SALQN 108 (347)
T ss_dssp TTCSEEECCSS--------CCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccccEEEEeCC--------cccc-ch-hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccCc--hHHcC
Confidence 46889999884 3332 33 47889999999999999985 444 88999999999999999875 36899
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLK 219 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 219 (368)
+++|++|++++|.+...+. +..+++|++|++++|....... .+..+++|++|++++|.+.+..+ +..+++|+
T Consensus 109 l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred CCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 9999999999999887665 7899999999999996555433 36789999999999999877654 77899999
Q ss_pred eEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEcc
Q 047861 220 ALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLR 299 (368)
Q Consensus 220 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 299 (368)
+|++++|.+++.. .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 181 ~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 181 SLSLNYNQIEDIS-----PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251 (347)
T ss_dssp EEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred EEEccCCcccccc-----cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECC
Confidence 9999999987543 26788999999999999985443 7889999999999999986433 8899999999999
Q ss_pred CCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccCC
Q 047861 300 SNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 300 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
+|.+++ + ..+..+++|++|++++|.+++. ..+..++ +|++|++++|++++..|..++++
T Consensus 252 ~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-----~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 252 TNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLS-----QLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp SSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCT-----TCSEEECCSSCCCGGGHHHHHTC
T ss_pred CCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCC-----CCCEEECcCCcCCCcChhHhhcc
Confidence 999985 3 5688999999999999999874 3466666 99999999999998888877765
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=5.4e-30 Score=232.75 Aligned_cols=254 Identities=19% Similarity=0.241 Sum_probs=110.6
Q ss_pred CCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEe
Q 047861 93 HLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLD 172 (368)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 172 (368)
+|++|++++|.+++. .+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+...+.. .+..+++|++|+
T Consensus 53 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 130 (353)
T 2z80_A 53 AVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLN 130 (353)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH-HHTTCTTCSEEE
T ss_pred cCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh-HhCCCccCCEEE
Confidence 445555555544432 222344445555555555544444444444445555555555544433321 134444555555
Q ss_pred CCCCCCCCCchhhhhcCCCCCCCEEEccCC-CCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEcc
Q 047861 173 LSQADLSKATDWLLVTNSLSSLKVLNLSYC-ELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLS 251 (368)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 251 (368)
+++|.+...+. ...+..+++|++|++++| .+....+..+..+++|++|++++|.+++..+. .+..+++|++|+++
T Consensus 131 L~~n~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~ 206 (353)
T 2z80_A 131 LLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILH 206 (353)
T ss_dssp CTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEE
T ss_pred CCCCCCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCC
Confidence 55444443321 002234445555555444 23444444444445555555555544443333 34444455555555
Q ss_pred CCcCCCCCCc-cccCCCCCCEEeCCCCcCCCCCChhc---cCCCCCCEEEccCCcccc----cCCcccccCCCCCEEecC
Q 047861 252 GNQFQGKIPI-GLGNLTFLRHLDLSDNEFNSAIPGWL---SKLNDLEFLSLRSNSLQG----KIPTSFVRLCKLTSIDLS 323 (368)
Q Consensus 252 ~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~ 323 (368)
+|.+. .++. .+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|+++
T Consensus 207 ~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls 285 (353)
T 2z80_A 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285 (353)
T ss_dssp CSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred CCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence 55443 2222 12234445555555554443222211 123344444444444443 234444445555555555
Q ss_pred CCcCcccchhh-HhhhcccccccccEEEccCCcceec
Q 047861 324 FVKLSQDLSQV-LDIFSACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 324 ~n~l~~~~~~~-l~~~~~~~~~~L~~L~l~~n~l~~~ 359 (368)
+|.++. +|.. +..++ +|++|++++|++++.
T Consensus 286 ~N~l~~-i~~~~~~~l~-----~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 286 RNQLKS-VPDGIFDRLT-----SLQKIWLHTNPWDCS 316 (353)
T ss_dssp SSCCCC-CCTTTTTTCT-----TCCEEECCSSCBCCC
T ss_pred CCCCCc-cCHHHHhcCC-----CCCEEEeeCCCccCc
Confidence 555442 2222 23333 455555555554443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.5e-29 Score=240.85 Aligned_cols=268 Identities=19% Similarity=0.236 Sum_probs=219.3
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
..++.|+|++ +.+.+..|..|..+++|++|+|++|.+++. .+..++.+++|++|++++|.+++..+..+..
T Consensus 75 ~~L~~L~L~~--------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 145 (597)
T 3oja_B 75 RQVELLNLND--------LQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 145 (597)
T ss_dssp CCCSEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCC--------CCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhcc
Confidence 4688999988 577777778899999999999999999875 6667889999999999999999876666788
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCC-------------------CCEEEcc
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSS-------------------LKVLNLS 200 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------------------L~~L~l~ 200 (368)
+++|++|++++|.+...+.. .+..+++|++|++++|.+...+ +..+++ |+.|+++
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTT-TTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred CCCCCEEEeeCCcCCCCChh-hhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 99999999999988766543 3788899999999999887653 123444 4555555
Q ss_pred CCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC
Q 047861 201 YCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFN 280 (368)
Q Consensus 201 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 280 (368)
+|.+....... .++|+.|++++|.+++. . .+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 220 ~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 220 HNSINVVRGPV---NVELTILKLQHNNLTDT--A---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp SSCCCEEECSC---CSCCCEEECCSSCCCCC--G---GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred CCccccccccc---CCCCCEEECCCCCCCCC--h---hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 55544433222 36899999999999863 3 6889999999999999999888999999999999999999998
Q ss_pred CCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceecc
Q 047861 281 SAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHM 360 (368)
Q Consensus 281 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (368)
+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+++.. +..++ +|++|++++|++++..
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~-----~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH-----TLKNLTLSHNDWDCNS 361 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC-----CCSEEECCSSCEEHHH
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcC-----CCCEEEeeCCCCCChh
Confidence 7 5666678999999999999998 68888899999999999999998643 34455 9999999999997643
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.6e-28 Score=239.94 Aligned_cols=119 Identities=22% Similarity=0.329 Sum_probs=91.4
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCC-CCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEec
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFN-SAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDL 322 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 322 (368)
+++.++++.|.+.+..+..+..++.++.|++++|.+. ...|..+..+++|++|+|++|++++..|..+.++++|++|+|
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 3344444444444344444556677788888887643 345677888899999999999999888888999999999999
Q ss_pred CCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccCC
Q 047861 323 SFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 323 ~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
++|++++..+..+..++ +|++|++++|++++..|..+.++
T Consensus 526 s~N~l~~l~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLN-----SLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp TTSCCCBCCCGGGTTCT-----TCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCCcCCCCChhHHhCCC-----CCCEEECCCCcCCCCCHHHHHhh
Confidence 99999988777788777 99999999999998888887654
No 42
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=5.4e-28 Score=227.71 Aligned_cols=267 Identities=27% Similarity=0.385 Sum_probs=152.1
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.||++++ .+.+..+ +.++++|++|++++|.+++. +. +.++++|++|++++|.+++..+ +..
T Consensus 68 ~~L~~L~Ls~n--------~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~--~~~ 132 (466)
T 1o6v_A 68 NNLTQINFSNN--------QLTDITP--LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITDIDP--LKN 132 (466)
T ss_dssp TTCCEEECCSS--------CCCCCGG--GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred cCCCEEECCCC--------ccCCchh--hhccccCCEEECCCCccccC--hh-hcCCCCCCEEECCCCCCCCChH--HcC
Confidence 46788888884 4444333 67777777777777777643 33 6777777777777777766532 666
Q ss_pred CCCCCEEeCCCCcCCcccch------------------hhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccC
Q 047861 140 LSNLQYLDLSQNYLLQVESF------------------SWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSY 201 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 201 (368)
+++|++|++++|.+...+.. ..+..+++|++|++++|.+...+ .+..+++|++|++++
T Consensus 133 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS----VLAKLTNLESLIATN 208 (466)
T ss_dssp CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh----hhccCCCCCEEEecC
Confidence 77777777776665443321 11445566666666666655543 234455666666666
Q ss_pred CCCccCCCCCccCCCCCCeEEccCCCCCCccccc------------------cchhcCCCCccEEEccCCcCCCCCCccc
Q 047861 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQF------------------GSWVFGLHNLVFFDLSGNQFQGKIPIGL 263 (368)
Q Consensus 202 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~l 263 (368)
|.+.+..+ +..+++|++|++++|.+++. +.+ ...+..+++|+.|++++|.+.+..+ +
T Consensus 209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~ 283 (466)
T 1o6v_A 209 NQISDITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--L 283 (466)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--G
T ss_pred Cccccccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--c
Confidence 65554433 33445555555555544432 000 0013344455555555555443222 4
Q ss_pred cCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhccccc
Q 047861 264 GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGA 343 (368)
Q Consensus 264 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~ 343 (368)
..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|+.|++++|.+++. ..+..++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~---- 353 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT---- 353 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT----
T ss_pred cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC----
Confidence 455555555555555544222 4555666666666666654433 45666666666666666653 2344455
Q ss_pred ccccEEEccCCcceeccC
Q 047861 344 YALESLVLRSCQFSGHMT 361 (368)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p 361 (368)
+|++|++++|++++..|
T Consensus 354 -~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 354 -NINWLSAGHNQISDLTP 370 (466)
T ss_dssp -TCCEEECCSSCCCBCGG
T ss_pred -CCCEEeCCCCccCccch
Confidence 77777777777776655
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=3.1e-29 Score=241.13 Aligned_cols=110 Identities=25% Similarity=0.345 Sum_probs=68.5
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCC-cchhcC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGV-TPYQLG 138 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~ 138 (368)
.+++.+++++ +.+.+..|..|.++++|++|++++|.+++. .+..++++++|++|++++|.+++. .|..++
T Consensus 50 ~~L~~L~Ls~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 50 ANLQVLILKS--------SRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred CcccEEECCC--------CCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 4678888888 466666666777777777777777777753 444477777777777777777652 345666
Q ss_pred CCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCC
Q 047861 139 SLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADL 178 (368)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 178 (368)
++++|++|++++|..........+..+++|++|++++|.+
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 7777777777776522211111244445555555444444
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.7e-29 Score=220.34 Aligned_cols=251 Identities=22% Similarity=0.249 Sum_probs=215.2
Q ss_pred cEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccc-hhhhcCCCCCCEEeC
Q 047861 95 IHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVES-FSWLSGLSLLEHLDL 173 (368)
Q Consensus 95 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l 173 (368)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.+..... ...+..+++|++|++
T Consensus 10 ~~l~c~~~~l~--~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS--SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc--cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777777 466654 3789999999999997766668999999999999999875531 123567999999999
Q ss_pred CCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCC-CCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccC
Q 047861 174 SQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPP-SSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSG 252 (368)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 252 (368)
++|.+...+. .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 86 s~n~i~~l~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 86 SFNGVITMSS---NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAG 159 (306)
T ss_dssp CSCSEEEEEE---EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTT
T ss_pred CCCccccChh---hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCC
Confidence 9998876543 45689999999999999988776 6788899999999999999876666 688899999999999
Q ss_pred CcCCC-CCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccc
Q 047861 253 NQFQG-KIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDL 331 (368)
Q Consensus 253 n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 331 (368)
|.+.+ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..
T Consensus 160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 99986 57888999999999999999999888889999999999999999999777778899999999999999999988
Q ss_pred hhhHhhhcccccccccEEEccCCcceec
Q 047861 332 SQVLDIFSACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 332 ~~~l~~~~~~~~~~L~~L~l~~n~l~~~ 359 (368)
+..+..++ ++|++|++++|++++.
T Consensus 240 ~~~~~~~~----~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 240 KQELQHFP----SSLAFLNLTQNDFACT 263 (306)
T ss_dssp SSSCCCCC----TTCCEEECTTCCEECS
T ss_pred HHHHHhhh----ccCCEEEccCCCeecc
Confidence 88777662 1899999999999865
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=8.6e-28 Score=226.32 Aligned_cols=263 Identities=25% Similarity=0.340 Sum_probs=187.8
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcc-----
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTP----- 134 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----- 134 (368)
.+++.++++++ .+.+..+ +.++++|++|++++|.+++. +. +..+++|++|++++|.+.+...
T Consensus 90 ~~L~~L~l~~n--------~l~~~~~--~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~ 156 (466)
T 1o6v_A 90 TKLVDILMNNN--------QIADITP--LANLTNLTGLTLFNNQITDI--DP-LKNLTNLNRLELSSNTISDISALSGLT 156 (466)
T ss_dssp TTCCEEECCSS--------CCCCCGG--GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEEEEEEEECCCGGGTTCT
T ss_pred ccCCEEECCCC--------ccccChh--hcCCCCCCEEECCCCCCCCC--hH-HcCCCCCCEEECCCCccCCChhhccCC
Confidence 46888888884 4544433 77778888888887777643 22 6666777777776666554311
Q ss_pred --------------hhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhh---------------
Q 047861 135 --------------YQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWL--------------- 185 (368)
Q Consensus 135 --------------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------------- 185 (368)
..+..+++|++|++++|.+...+. +..+++|++|++++|.+.....+.
T Consensus 157 ~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 233 (466)
T 1o6v_A 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 233 (466)
T ss_dssp TCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh---hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc
Confidence 124455666666666666554432 444555555555555444332110
Q ss_pred ---hhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCcc
Q 047861 186 ---LVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIG 262 (368)
Q Consensus 186 ---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 262 (368)
..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+.+..+
T Consensus 234 ~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 234 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS-----PLAGLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp CCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG-----GGTTCTTCSEEECCSSCCSCCGG--
T ss_pred ccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc-----cccCCCccCeEEcCCCcccCchh--
Confidence 123456667777777776665544 667778888888888777543 26688999999999999986443
Q ss_pred ccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccc
Q 047861 263 LGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACG 342 (368)
Q Consensus 263 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 342 (368)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..| +..++
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~--- 375 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT--- 375 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT---
T ss_pred hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC---
Confidence 7889999999999999987654 67899999999999999864 568899999999999999998776 67777
Q ss_pred cccccEEEccCCccee
Q 047861 343 AYALESLVLRSCQFSG 358 (368)
Q Consensus 343 ~~~L~~L~l~~n~l~~ 358 (368)
+|++|++++|++++
T Consensus 376 --~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 376 --RITQLGLNDQAWTN 389 (466)
T ss_dssp --TCCEEECCCEEEEC
T ss_pred --CCCEEeccCCcccC
Confidence 99999999999997
No 46
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.8e-27 Score=222.95 Aligned_cols=258 Identities=21% Similarity=0.224 Sum_probs=131.5
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
+++.+|+++ +.+.+. | .+..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + ++.+
T Consensus 43 ~L~~L~Ls~--------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 43 TLTSLDCHN--------SSITDM-T-GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp TCCEEECCS--------SCCCCC-T-TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred CCCEEEccC--------CCcccC-h-hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 456666666 233332 3 455666666666666666542 2 55566666666666666554 2 5556
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCC------------------
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYC------------------ 202 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------------ 202 (368)
++|++|++++|.+...+ +..+++|++|++++|.+...+ +..+++|++|++++|
T Consensus 106 ~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID-----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC-----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccceec-----cccCCcCCEEECCCCCcccccccccCCcCCEEE
Confidence 66666666666655542 455566666666666555431 234445555555544
Q ss_pred ----CCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCc
Q 047861 203 ----ELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNE 278 (368)
Q Consensus 203 ----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 278 (368)
.+++.. +..+++|+.|++++|.+++. .+..+++|+.|++++|.+.+ +| +..+++|+.|++++|.
T Consensus 177 ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 177 CSFNKITELD---VSQNKLLNRLNCDTNNITKL------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCSSCCCCCC---CTTCTTCCEEECCSSCCSCC------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred CCCCccceec---cccCCCCCEEECcCCcCCee------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 444432 33444455555554444432 13344555555555555553 33 4455555555555555
Q ss_pred CCCCCChhccCCC-------CCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhh---HhhhcccccccccE
Q 047861 279 FNSAIPGWLSKLN-------DLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQV---LDIFSACGAYALES 348 (368)
Q Consensus 279 l~~~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---l~~~~~~~~~~L~~ 348 (368)
+++..+..+..+. +|+.|++++|.+.+.+| ...+++|+.|++++|...+.+|.. +..+....+++|++
T Consensus 245 l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~ 322 (457)
T 3bz5_A 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY 322 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence 5543222222221 23333333333333333 244566666666666665555432 11122233447777
Q ss_pred EEccCCccee
Q 047861 349 LVLRSCQFSG 358 (368)
Q Consensus 349 L~l~~n~l~~ 358 (368)
|++++|++++
T Consensus 323 L~L~~N~l~~ 332 (457)
T 3bz5_A 323 LYLNNTELTE 332 (457)
T ss_dssp EECTTCCCSC
T ss_pred EECCCCcccc
Confidence 7777777775
No 47
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=2.2e-29 Score=225.20 Aligned_cols=270 Identities=21% Similarity=0.204 Sum_probs=225.1
Q ss_pred cEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSL 140 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (368)
++...+++. ..+...+...+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+ +..+
T Consensus 11 ~l~i~~ls~--------~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l 79 (317)
T 3o53_A 11 RYKIEKVTD--------SSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESL 79 (317)
T ss_dssp EEEEESCCT--------TTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTC
T ss_pred ceeEeeccc--------cchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhc
Confidence 344555655 456655555667788999999999999975 56789999999999999999987754 8899
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCe
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKA 220 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (368)
++|++|++++|.+...+ ..++|++|++++|.+...+. ..+++|++|++++|.+.+..+..+..+++|++
T Consensus 80 ~~L~~L~Ls~n~l~~l~------~~~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 80 STLRTLDLNNNYVQELL------VGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp TTCCEEECCSSEEEEEE------ECTTCCEEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred CCCCEEECcCCcccccc------CCCCcCEEECCCCccCCcCc-----cccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 99999999999877654 34899999999999877642 35789999999999999988888889999999
Q ss_pred EEccCCCCCCccccccchh-cCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEcc
Q 047861 221 LDLSQNQFNNSLFQFGSWV-FGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLR 299 (368)
Q Consensus 221 L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 299 (368)
|++++|.+++..+. .+ ..+++|++|++++|.+.+. +. ...+++|++|++++|.+++. +..+..+++|++|+++
T Consensus 149 L~Ls~N~l~~~~~~---~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 149 LDLKLNEIDTVNFA---ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR 222 (317)
T ss_dssp EECTTSCCCEEEGG---GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECT
T ss_pred EECCCCCCCcccHH---HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECc
Confidence 99999999876555 34 4789999999999999843 33 34589999999999999864 4558899999999999
Q ss_pred CCcccccCCcccccCCCCCEEecCCCcCc-ccchhhHhhhcccccccccEEEccCC-cceeccCccc
Q 047861 300 SNSLQGKIPTSFVRLCKLTSIDLSFVKLS-QDLSQVLDIFSACGAYALESLVLRSC-QFSGHMTNQL 364 (368)
Q Consensus 300 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~ 364 (368)
+|+++ .+|..+..+++|+.|++++|.+. +..+..+..++ +|+.++++++ .++|..|...
T Consensus 223 ~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-----~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 223 NNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-----RVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp TSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-----HHHHHHHHHHHHHHSSSSCCC
T ss_pred CCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc-----cceEEECCCchhccCCchhcc
Confidence 99998 67888999999999999999999 77888888888 9999999854 5666655543
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-27 Score=210.14 Aligned_cols=239 Identities=23% Similarity=0.233 Sum_probs=141.1
Q ss_pred CCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCc-CCcccchhhhcCCCCCC
Q 047861 91 FKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNY-LLQVESFSWLSGLSLLE 169 (368)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~ 169 (368)
.++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +...+. ..+..++
T Consensus 31 ~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~--- 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLG--- 105 (285)
T ss_dssp CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCT---
T ss_pred CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-HHhcCCc---
Confidence 35788888888877754 44567777888888888887777767777777777777777775 443322 1244444
Q ss_pred EEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEE
Q 047861 170 HLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFD 249 (368)
Q Consensus 170 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 249 (368)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++|+
T Consensus 106 -----------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~ 159 (285)
T 1ozn_A 106 -----------------------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLF 159 (285)
T ss_dssp -----------------------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEE
T ss_pred -----------------------CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEE
Confidence 455555555555544444555555566666665555544333 345555666666
Q ss_pred ccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcc
Q 047861 250 LSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 250 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 66665553333345556666666666666666556666666666666666666665444556666666666666666654
Q ss_pred cchhhHhhhcccccccccEEEccCCcceeccCccccC
Q 047861 330 DLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366 (368)
Q Consensus 330 ~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (368)
..+.. .... .++.+..+.+.+....|+.+.+
T Consensus 240 ~~~~~-~~~~-----~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 240 DCRAR-PLWA-----WLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp SGGGH-HHHH-----HHHHCCSEECCCBEEESGGGTT
T ss_pred CCCcH-HHHH-----HHHhcccccCccccCCchHhCC
Confidence 33211 1111 3344445556666666665543
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.7e-27 Score=219.69 Aligned_cols=247 Identities=22% Similarity=0.224 Sum_probs=202.6
Q ss_pred EEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCC
Q 047861 63 LQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSN 142 (368)
Q Consensus 63 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (368)
..++.++. .+ ..+|..+. ++++.|+|++|.++.. .+..+.++++|++|++++|.++...+..+..+++
T Consensus 46 ~~v~c~~~--------~l-~~iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~ 113 (440)
T 3zyj_A 46 SKVICVRK--------NL-REVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113 (440)
T ss_dssp CEEECCSC--------CC-SSCCSCCC--TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSS
T ss_pred CEEEeCCC--------Cc-CcCCCCCC--CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCcc
Confidence 45666662 22 34555443 6899999999999865 5678899999999999999999888888999999
Q ss_pred CCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCC-CCccCCCCCccCCCCCCeE
Q 047861 143 LQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYC-ELHHFPPSSSANFSSLKAL 221 (368)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 221 (368)
|++|++++|.+...+... +..+++|++|++++|.+...+.. .+..+++|++|++++| .+....+..+..+++|++|
T Consensus 114 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 114 LNTLELFDNRLTTIPNGA-FVYLSKLKELWLRNNPIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CCEEECCSSCCSSCCTTT-SCSCSSCCEEECCSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CCEEECCCCcCCeeCHhH-hhccccCceeeCCCCcccccCHH--HhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 999999999988766433 78899999999999988766432 4568899999999884 5555666678889999999
Q ss_pred EccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCC
Q 047861 222 DLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSN 301 (368)
Q Consensus 222 ~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 301 (368)
++++|.++.. + .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|
T Consensus 191 ~L~~n~l~~~-~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 191 NLAMCNLREI-P----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp ECTTSCCSSC-C----CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred cCCCCcCccc-c----ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence 9999988743 3 3678889999999999998777888889999999999999998888888888999999999999
Q ss_pred cccccCCcccccCCCCCEEecCCCcCcc
Q 047861 302 SLQGKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 302 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
++++..+..+..+++|+.|+|++|.+.-
T Consensus 266 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 266 NLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCCccChhHhccccCCCEEEcCCCCccC
Confidence 9986666778888999999999998764
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6e-27 Score=219.69 Aligned_cols=235 Identities=22% Similarity=0.229 Sum_probs=184.2
Q ss_pred ccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhc
Q 047861 84 INLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLS 163 (368)
Q Consensus 84 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 163 (368)
+|..+. +++++|+|++|.+++. .+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+...+... +.
T Consensus 69 iP~~~~--~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~ 144 (452)
T 3zyi_A 69 VPQGIP--SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA-FE 144 (452)
T ss_dssp CCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT-SS
T ss_pred cCCCCC--CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh-hc
Confidence 454443 6788999999988865 5677888899999999999888887788888899999999998877665433 67
Q ss_pred CCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccC-CCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCC
Q 047861 164 GLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSY-CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGL 242 (368)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 242 (368)
.+++|++|++++|.+...+.. .+..+++|++|++++ +.+....+..+..+++|+.|++++|.+++. + .+..+
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~----~~~~l 217 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P----NLTPL 217 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C----CCTTC
T ss_pred ccCCCCEEECCCCCcceeCHh--HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c----ccccc
Confidence 788888888888888765432 446788888888887 455555566677888888888888888753 2 35677
Q ss_pred CCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEec
Q 047861 243 HNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDL 322 (368)
Q Consensus 243 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 322 (368)
++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 88888888888888777778888888888888888888777777888888888888888888666666778888888888
Q ss_pred CCCcCcc
Q 047861 323 SFVKLSQ 329 (368)
Q Consensus 323 ~~n~l~~ 329 (368)
++|.+..
T Consensus 298 ~~Np~~C 304 (452)
T 3zyi_A 298 HHNPWNC 304 (452)
T ss_dssp CSSCEEC
T ss_pred cCCCcCC
Confidence 8887764
No 51
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=9.7e-27 Score=217.90 Aligned_cols=257 Identities=19% Similarity=0.188 Sum_probs=176.0
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.++++++ .+.+. | ++.+++|++|++++|.+++. + ++++++|++|++++|.+++. + ++.
T Consensus 64 ~~L~~L~Ls~n--------~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l-~--~~~ 125 (457)
T 3bz5_A 64 TGLTKLICTSN--------NITTL-D--LSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKL-D--VSQ 125 (457)
T ss_dssp TTCSEEECCSS--------CCSCC-C--CTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCC-C--CTT
T ss_pred CCCCEEEccCC--------cCCeE-c--cccCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCee-c--CCC
Confidence 45677777774 33331 2 45555555555555555532 1 44555555555555555443 2 444
Q ss_pred CCCCCEEeCCCCcCCcccch------------------hhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccC
Q 047861 140 LSNLQYLDLSQNYLLQVESF------------------SWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSY 201 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 201 (368)
+++|++|++++|.+...+.. ..+..+++|++|++++|.+...+ +..+++|+.|++++
T Consensus 126 l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-----l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-----VSQNKLLNRLNCDT 200 (457)
T ss_dssp CTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-----CTTCTTCCEEECCS
T ss_pred CCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-----cccCCCCCEEECcC
Confidence 45555555555444332100 01556777888888888777653 46789999999999
Q ss_pred CCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCC-------CCCEEeC
Q 047861 202 CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLT-------FLRHLDL 274 (368)
Q Consensus 202 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-------~L~~L~L 274 (368)
|.+.+. .+..+++|+.|++++|++++. | +..+++|+.|++++|.+.+..+..+..+. +|+.|++
T Consensus 201 N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p-----~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 201 NNITKL---DLNQNIQLTFLDCSSNKLTEI-D-----VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp SCCSCC---CCTTCTTCSEEECCSSCCSCC-C-----CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred CcCCee---ccccCCCCCEEECcCCccccc-C-----ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEEC
Confidence 999887 377889999999999999873 2 56889999999999999865443333332 4455666
Q ss_pred CCCcCCCCCChhccCCCCCCEEEccCCcccccCCc--------ccccCCCCCEEecCCCcCcccchhhHhhhcccccccc
Q 047861 275 SDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPT--------SFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYAL 346 (368)
Q Consensus 275 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L 346 (368)
++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|++|++++|.+++. + +..++ +|
T Consensus 272 ~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~-----~L 341 (457)
T 3bz5_A 272 THNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNT-----KL 341 (457)
T ss_dssp TTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCT-----TC
T ss_pred CCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-c--cccCC-----cC
Confidence 6666555554 46789999999999987666553 256778999999999999983 2 66666 99
Q ss_pred cEEEccCCccee
Q 047861 347 ESLVLRSCQFSG 358 (368)
Q Consensus 347 ~~L~l~~n~l~~ 358 (368)
++|++++|++++
T Consensus 342 ~~L~l~~N~l~~ 353 (457)
T 3bz5_A 342 KSLSCVNAHIQD 353 (457)
T ss_dssp SEEECCSSCCCB
T ss_pred cEEECCCCCCCC
Confidence 999999999996
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2e-27 Score=209.29 Aligned_cols=253 Identities=22% Similarity=0.193 Sum_probs=180.2
Q ss_pred CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCc-ccCCcchhc
Q 047861 59 TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRAN-FAGVTPYQL 137 (368)
Q Consensus 59 ~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l 137 (368)
...++.+++++ +.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|. +....+..+
T Consensus 31 ~~~l~~L~l~~--------n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~ 101 (285)
T 1ozn_A 31 PAASQRIFLHG--------NRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATF 101 (285)
T ss_dssp CTTCSEEECTT--------SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred CCCceEEEeeC--------CcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHh
Confidence 35789999999 577777777899999999999999999865 57889999999999999997 887778889
Q ss_pred CCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCC
Q 047861 138 GSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSS 217 (368)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 217 (368)
..+++|++|++++|.+...... .+. .+++|++|++++|.+....+..+..+++
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~-~~~--------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPG-LFR--------------------------GLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTT-TTT--------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCcCCCEEECCCCcCCEECHh-Hhh--------------------------CCcCCCEEECCCCcccccCHhHhccCCC
Confidence 9999999999999987655322 133 4455555555555555555555666777
Q ss_pred CCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEE
Q 047861 218 LKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLS 297 (368)
Q Consensus 218 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 297 (368)
|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 155 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 231 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPER---AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231 (285)
T ss_dssp CCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE
T ss_pred ccEEECCCCcccccCHH---HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEe
Confidence 77777777777654444 466677777777777777766677777788888888888888776666677888888888
Q ss_pred ccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCC
Q 047861 298 LRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSC 354 (368)
Q Consensus 298 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 354 (368)
+++|.+....+.. .....++.+..+.+.+....|..+.... +..++..++.+|
T Consensus 232 l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~---l~~l~~~~l~~C 284 (285)
T 1ozn_A 232 LNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRD---LKRLAANDLQGC 284 (285)
T ss_dssp CCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCB---GGGSCGGGSCCC
T ss_pred ccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcC---hhhcCHHHhccC
Confidence 8888776432211 1112334445666777777776554321 124555555555
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=217.14 Aligned_cols=277 Identities=22% Similarity=0.258 Sum_probs=225.6
Q ss_pred CCCCCCCCCcccccEEecCC-----------CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCC
Q 047861 39 SWNIGDEDCCAWGGVVCNNF-----------TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGI 107 (368)
Q Consensus 39 ~w~~~~~~~c~w~gv~c~~~-----------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 107 (368)
.|.. +...|.|.|+ |+-. ...++.+++++ +.+.+..+..+.++++|++|++++|.+++.
T Consensus 22 ~~~~-~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~--------n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 22 SSNQ-ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSN--------NRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTT--------SCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred CCCc-cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCC--------CcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 4543 5567899887 5321 24789999999 567776666899999999999999999865
Q ss_pred cCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCC-CCCCchhhh
Q 047861 108 QIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQAD-LSKATDWLL 186 (368)
Q Consensus 108 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~ 186 (368)
.+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+...+....+..+++|++|++++|. +...+. .
T Consensus 92 -~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~ 168 (353)
T 2z80_A 92 -EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--K 168 (353)
T ss_dssp -CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--T
T ss_pred -CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--H
Confidence 567899999999999999999988666689999999999999998877664458899999999999984 544422 2
Q ss_pred hcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccc---
Q 047861 187 VTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGL--- 263 (368)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l--- 263 (368)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.++..... .+..+++|++|++++|.+.+..+..+
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI---FVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHH---HHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhh---hhhhcccccEEECCCCccccccccccccc
Confidence 457889999999999999999899999999999999999998754433 45668999999999999986544433
Q ss_pred cCCCCCCEEeCCCCcCCC----CCChhccCCCCCCEEEccCCcccccCCcc-cccCCCCCEEecCCCcCcccch
Q 047861 264 GNLTFLRHLDLSDNEFNS----AIPGWLSKLNDLEFLSLRSNSLQGKIPTS-FVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 264 ~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
...+.++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 245778999999998876 36677889999999999999999 66665 5899999999999999998765
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.5e-26 Score=217.02 Aligned_cols=228 Identities=23% Similarity=0.242 Sum_probs=164.9
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
..++.|+|++ +.+.+..+..|.++++|++|++++|.+++. .+..+..+++|++|++++|.++...+..+..
T Consensus 75 ~~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLME--------NNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCS--------SCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSS
T ss_pred CCccEEECcC--------CcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcc
Confidence 3577777777 466666677777888888888888877754 5566777888888888888877776666777
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCC-CCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCC
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADL-SKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSL 218 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 218 (368)
+++|++|++++|.+...+... +..+++|++|+++++.. ...+. ..+..+++|++|++++|.+.+.+ .+..+++|
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L 220 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYA-FNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGL 220 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECT--TTTTTCTTCCEEECTTSCCSSCC--CCTTCTTC
T ss_pred cCCCCEEECCCCCcceeCHhH-HhcCCcccEEeCCCCCCccccCh--hhccCCCCCCEEECCCCcccccc--cccccccc
Confidence 888888888888776555432 67778888888877433 22221 13456777888888888777653 35667788
Q ss_pred CeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEc
Q 047861 219 KALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSL 298 (368)
Q Consensus 219 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 298 (368)
++|++++|.+++..+. .+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 221 ~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPG---SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CEEECTTSCCSEECGG---GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred cEEECcCCcCcccCcc---cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 8888888887766665 6777778888888888877666677777788888888888877666666677788888888
Q ss_pred cCCccc
Q 047861 299 RSNSLQ 304 (368)
Q Consensus 299 ~~n~l~ 304 (368)
++|.+.
T Consensus 298 ~~Np~~ 303 (452)
T 3zyi_A 298 HHNPWN 303 (452)
T ss_dssp CSSCEE
T ss_pred cCCCcC
Confidence 887665
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.9e-27 Score=213.52 Aligned_cols=216 Identities=22% Similarity=0.241 Sum_probs=170.3
Q ss_pred CCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCC
Q 047861 116 LKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLK 195 (368)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 195 (368)
.+.+++|+++++.++. +|..+..+++|++|++++|.+..++. .+..+++|++|++++|.+...
T Consensus 80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~Ls~n~l~~l-------------- 142 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMELPD--TMQQFAGLETLTLARNPLRAL-------------- 142 (328)
T ss_dssp STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCCCCCS--CGGGGTTCSEEEEESCCCCCC--------------
T ss_pred ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCccchhH--HHhccCCCCEEECCCCccccC--------------
Confidence 4778899999998884 46677778888888888888764432 245555555555555555433
Q ss_pred EEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCcccccc------chhcCCCCccEEEccCCcCCCCCCccccCCCCC
Q 047861 196 VLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFG------SWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFL 269 (368)
Q Consensus 196 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 269 (368)
|..+..+++|++|++++|.+.+..|... ..+.++++|++|++++|.++ .+|..+..+++|
T Consensus 143 -------------p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 208 (328)
T 4fcg_A 143 -------------PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208 (328)
T ss_dssp -------------CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC
T ss_pred -------------cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC
Confidence 3334444445555554444443333310 13456899999999999998 888889999999
Q ss_pred CEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEE
Q 047861 270 RHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESL 349 (368)
Q Consensus 270 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L 349 (368)
++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|
T Consensus 209 ~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-----~L~~L 282 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-----QLEKL 282 (328)
T ss_dssp CEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-----TCCEE
T ss_pred CEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-----CCCEE
Confidence 999999999985 666799999999999999999999999999999999999999999999999998888 99999
Q ss_pred EccCCcceeccCccccCCC
Q 047861 350 VLRSCQFSGHMTNQLGQFK 368 (368)
Q Consensus 350 ~l~~n~l~~~~p~~~~~~~ 368 (368)
++++|++++.+|+.+++++
T Consensus 283 ~L~~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLP 301 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSC
T ss_pred eCCCCCchhhccHHHhhcc
Confidence 9999999999999998874
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=215.07 Aligned_cols=238 Identities=25% Similarity=0.285 Sum_probs=193.0
Q ss_pred cccEEecCC---------CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCC
Q 047861 50 WGGVVCNNF---------TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLR 120 (368)
Q Consensus 50 w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 120 (368)
|..+.|... ...++.++|++ +.+.+..+..|.++++|++|+|++|.++.. .+..+..+++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHE--------NQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCS--------CCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccC--------CcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCC
Confidence 556777532 24577888888 577777778889999999999999988865 557788899999
Q ss_pred EEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCC-CchhhhhcCCCCCCCEEEc
Q 047861 121 YLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSK-ATDWLLVTNSLSSLKVLNL 199 (368)
Q Consensus 121 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l 199 (368)
+|++++|+++...+..+..+++|++|++++|.+...+... +..+++|++|+++++.... .+. ..+..+++|++|++
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA-FNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNL 192 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT-TTTCTTCCEEECCCCTTCCEECT--TTTTTCSSCCEEEC
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHH-hhhCcccCEeCCCCCCCcceeCc--chhhcccccCeecC
Confidence 9999999998887777888999999999999887665433 7888999999998854333 222 14567889999999
Q ss_pred cCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 047861 200 SYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEF 279 (368)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 279 (368)
++|.+...+ .+..+++|++|++++|.+++..+. .+.++++|+.|++++|.+.+..+..+..+++|++|+|++|.+
T Consensus 193 ~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 193 AMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPG---SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp TTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTT---TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CCCcCcccc--ccCCCcccCEEECCCCccCccChh---hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 999888664 467788999999999998877666 788889999999999999877778888899999999999999
Q ss_pred CCCCChhccCCCCCCEEEccCCccc
Q 047861 280 NSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 280 ~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
++..+..+..+++|+.|++++|.+.
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhHhccccCCCEEEcCCCCcc
Confidence 8877777888899999999998775
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=2.6e-26 Score=224.21 Aligned_cols=117 Identities=26% Similarity=0.334 Sum_probs=103.7
Q ss_pred hhcCCCCccEEEccCCcCC-CCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCC
Q 047861 238 WVFGLHNLVFFDLSGNQFQ-GKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCK 316 (368)
Q Consensus 238 ~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 316 (368)
.+..++.++.|++++|.+. +..|..+..+++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 4556789999999999754 356788899999999999999999988999999999999999999999888888999999
Q ss_pred CCEEecCCCcCcccchhhHhhhcccccccccEEEccCCccee
Q 047861 317 LTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSG 358 (368)
Q Consensus 317 L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~ 358 (368)
|+.|++++|++++..|..+..++ ++|++|++++|+++-
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~----~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFP----SSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCC----TTCCEEECTTCCBCC
T ss_pred CCEEECCCCcCCCCCHHHHHhhh----CcCCEEEeeCCCCcc
Confidence 99999999999998888887762 189999999998753
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=9.3e-28 Score=226.71 Aligned_cols=247 Identities=22% Similarity=0.219 Sum_probs=207.9
Q ss_pred ccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccch
Q 047861 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESF 159 (368)
Q Consensus 80 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 159 (368)
+...+......+++|++|+|++|.+++. .|..+..+++|++|++++|.+++..| +..+++|++|++++|.+...+
T Consensus 22 l~~~l~~l~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-- 96 (487)
T 3oja_A 22 LKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-- 96 (487)
T ss_dssp HHHHHHTTSTTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE--
T ss_pred hHHHHHHhcccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC--
Confidence 3333333344556999999999999975 66789999999999999999988755 889999999999999877654
Q ss_pred hhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchh
Q 047861 160 SWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWV 239 (368)
Q Consensus 160 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 239 (368)
..++|++|++++|.+...+. ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+. .+
T Consensus 97 ----~~~~L~~L~L~~N~l~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~l 164 (487)
T 3oja_A 97 ----VGPSIETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA---EL 164 (487)
T ss_dssp ----ECTTCCEEECCSSCCCCEEE-----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGG---GG
T ss_pred ----CCCCcCEEECcCCcCCCCCc-----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChH---HH
Confidence 33899999999999987743 3578999999999999999888899999999999999999987665 45
Q ss_pred c-CCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCC
Q 047861 240 F-GLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLT 318 (368)
Q Consensus 240 ~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 318 (368)
. .+++|++|++++|.+++. + ....+++|+.|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred hhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence 4 789999999999999854 3 244689999999999999875 4458899999999999999994 788899999999
Q ss_pred EEecCCCcCc-ccchhhHhhhcccccccccEEEcc
Q 047861 319 SIDLSFVKLS-QDLSQVLDIFSACGAYALESLVLR 352 (368)
Q Consensus 319 ~L~l~~n~l~-~~~~~~l~~~~~~~~~~L~~L~l~ 352 (368)
.|++++|.+. +.+|..+..++ .|+.++++
T Consensus 241 ~L~l~~N~l~c~~~~~~~~~l~-----~L~~l~~~ 270 (487)
T 3oja_A 241 HFDLRGNGFHCGTLRDFFSKNQ-----RVQTVAKQ 270 (487)
T ss_dssp EEECTTCCBCHHHHHHHHTTCH-----HHHHHHHH
T ss_pred EEEcCCCCCcCcchHHHHHhCC-----CCcEEecc
Confidence 9999999998 66777777777 78877775
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.5e-29 Score=225.78 Aligned_cols=254 Identities=20% Similarity=0.202 Sum_probs=169.3
Q ss_pred CCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCccc-CCcchhcC-------CCCCCCEEeCCCCcCCcccchhh
Q 047861 90 DFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFA-GVTPYQLG-------SLSNLQYLDLSQNYLLQVESFSW 161 (368)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~ 161 (368)
..++|++|++++|.+ .+|..+... |++|++++|.+. ..++..+. .+++|++|++++|.+.......+
T Consensus 41 ~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344455555555555 144433322 555555555552 22333332 45556666666555543222221
Q ss_pred -hcCCCCCCEEeCCCCCCCCCchhhhhc--CCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccc-
Q 047861 162 -LSGLSLLEHLDLSQADLSKATDWLLVT--NSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGS- 237 (368)
Q Consensus 162 -~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~- 237 (368)
+..+++|++|++++|.+...+.....+ ..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 255666666666666665543222211 1237889999999999888888888999999999999987754211000
Q ss_pred hhcCCCCccEEEccCCcCCC--CCC-ccccCCCCCCEEeCCCCcCCCCCC-hhccCCCCCCEEEccCCcccccCCccccc
Q 047861 238 WVFGLHNLVFFDLSGNQFQG--KIP-IGLGNLTFLRHLDLSDNEFNSAIP-GWLSKLNDLEFLSLRSNSLQGKIPTSFVR 313 (368)
Q Consensus 238 ~~~~~~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 313 (368)
.+..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 23788899999999998873 122 333577899999999999988664 45566789999999999998 7787766
Q ss_pred CCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCccee
Q 047861 314 LCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSG 358 (368)
Q Consensus 314 l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~ 358 (368)
++|++|++++|++++. |. +..++ +|++|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~-----~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELP-----QVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSC-----EEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCC-----CCCEEeccCCCCCC
Confidence 8899999999999875 54 67777 99999999999886
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.9e-26 Score=212.44 Aligned_cols=245 Identities=21% Similarity=0.306 Sum_probs=112.6
Q ss_pred ccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCC
Q 047861 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSL 167 (368)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 167 (368)
+.++++|++|++++|.+++ +|.. ..+|++|++++|.+++. | .++.+++|++|++++|.+...+. ..++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~-----~~~~ 216 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPD-----LPLS 216 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCC-----CCTT
T ss_pred cCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCC-----CcCc
Confidence 4455555555555554442 2322 13455555555544442 2 34455555555555554443321 1134
Q ss_pred CCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccE
Q 047861 168 LEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVF 247 (368)
Q Consensus 168 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 247 (368)
|++|++++|.+...+ .+..+++|++|++++|.+.+.+. .+++|+.|++++|.+++ .+. .+++|++
T Consensus 217 L~~L~l~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~-l~~------~~~~L~~ 281 (454)
T 1jl5_A 217 LESIVAGNNILEELP----ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTD-LPE------LPQSLTF 281 (454)
T ss_dssp CCEEECCSSCCSSCC----CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSC-CCC------CCTTCCE
T ss_pred ccEEECcCCcCCccc----ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccc-cCc------ccCcCCE
Confidence 455555544444332 13345555555555555544321 12445555555554443 111 1234555
Q ss_pred EEccCCcCCC--CCCcc-------------ccCC-CCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCccc
Q 047861 248 FDLSGNQFQG--KIPIG-------------LGNL-TFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSF 311 (368)
Q Consensus 248 L~l~~n~l~~--~~~~~-------------l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 311 (368)
|++++|.+++ .+|.. +..+ ++|++|++++|.+++ +|.. +++|++|++++|+++ .+|.
T Consensus 282 L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~-- 354 (454)
T 1jl5_A 282 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE-- 354 (454)
T ss_dssp EECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--
T ss_pred EECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--
Confidence 5555554443 11111 1112 467777777777765 4432 578888888888887 4665
Q ss_pred ccCCCCCEEecCCCcCcc--cchhhHhhhccc--------ccccccEEEccCCccee--ccCccccCC
Q 047861 312 VRLCKLTSIDLSFVKLSQ--DLSQVLDIFSAC--------GAYALESLVLRSCQFSG--HMTNQLGQF 367 (368)
Q Consensus 312 ~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~~--------~~~~L~~L~l~~n~l~~--~~p~~~~~~ 367 (368)
.+++|+.|++++|.+++ .+|..+..+... .+++|++|++++|++++ .+|+++..+
T Consensus 355 -~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 355 -LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp -CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred -hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 46788999999999888 677776665100 01388999999999887 888887765
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=8.8e-27 Score=224.74 Aligned_cols=273 Identities=21% Similarity=0.216 Sum_probs=181.8
Q ss_pred CCCCCCCCCCCcccccEEe------cCCCCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCC
Q 047861 37 LASWNIGDEDCCAWGGVVC------NNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIP 110 (368)
Q Consensus 37 ~~~w~~~~~~~c~w~gv~c------~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 110 (368)
...|.. +.++|.|.|..+ ......++.++++++ .+. .+|..+. ++|++|++++|.++ .+|
T Consensus 12 w~~W~~-~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n--------~L~-~lp~~l~--~~L~~L~L~~N~l~--~lp 77 (622)
T 3g06_A 12 WSAWRR-AAPAEESRGRAAVVQKMRACLNNGNAVLNVGES--------GLT-TLPDCLP--AHITTLVIPDNNLT--SLP 77 (622)
T ss_dssp HHHHHH-TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSS--------CCS-CCCSCCC--TTCSEEEECSCCCS--CCC
T ss_pred HHHHHh-cCCcchhccccccCcccccccCCCCcEEEecCC--------CcC-ccChhhC--CCCcEEEecCCCCC--CCC
Confidence 345764 567889965322 111134778888884 444 5555444 67888888888777 355
Q ss_pred cccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCC
Q 047861 111 KYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNS 190 (368)
Q Consensus 111 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 190 (368)
. .+++|++|++++|+++.. |. .+++|++|++++|.+...+. .+++|++|++++|.+...+. .
T Consensus 78 ~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~------~ 139 (622)
T 3g06_A 78 A---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV------L 139 (622)
T ss_dssp C---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC------C
T ss_pred C---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC------C
Confidence 4 467778888887777654 33 56777777777777666543 45566666666666655432 2
Q ss_pred CCCCCEEEccCCCCccCCCC--Cc--------------cCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCc
Q 047861 191 LSSLKVLNLSYCELHHFPPS--SS--------------ANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQ 254 (368)
Q Consensus 191 ~~~L~~L~l~~~~~~~~~~~--~~--------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 254 (368)
+++|++|++++|.+.+.+.. .+ ..+++|+.|++++|.+++. +. .+++|+.|++++|.
T Consensus 140 l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l-~~------~~~~L~~L~L~~N~ 212 (622)
T 3g06_A 140 PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL-PT------LPSELYKLWAYNNR 212 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC-CC------CCTTCCEEECCSSC
T ss_pred CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC-CC------ccchhhEEECcCCc
Confidence 35566666666655543210 00 1235666666666666532 21 23567777777776
Q ss_pred CCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhh
Q 047861 255 FQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQV 334 (368)
Q Consensus 255 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 334 (368)
+. .+|. .+++|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|..
T Consensus 213 l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~ 279 (622)
T 3g06_A 213 LT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPES 279 (622)
T ss_dssp CS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGG
T ss_pred cc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHH
Confidence 66 3443 24788999999998876 44 45688999999999888 5665 5788999999999999 67888
Q ss_pred HhhhcccccccccEEEccCCcceeccCccccC
Q 047861 335 LDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366 (368)
Q Consensus 335 l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (368)
+..++ +|+.|+|++|++++.+|..+..
T Consensus 280 l~~l~-----~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 280 LIHLS-----SETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp GGGSC-----TTCEEECCSCCCCHHHHHHHHH
T ss_pred Hhhcc-----ccCEEEecCCCCCCcCHHHHHh
Confidence 88888 9999999999999988876653
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.2e-28 Score=215.79 Aligned_cols=248 Identities=21% Similarity=0.203 Sum_probs=206.0
Q ss_pred CcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeC
Q 047861 94 LIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDL 173 (368)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 173 (368)
++..+++.+.+... ....+..+++|++|++++|.+++..|..+..+++|++|++++|.+..... +..+++|++|++
T Consensus 12 l~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 45566666665432 33445667899999999999999988899999999999999999876654 789999999999
Q ss_pred CCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCC
Q 047861 174 SQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGN 253 (368)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 253 (368)
++|.+...+ ..++|++|++++|.+.+..+.. +++|++|++++|.+++..+. .+..+++|++|++++|
T Consensus 88 s~n~l~~l~-------~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 88 NNNYVQELL-------VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLN 154 (317)
T ss_dssp CSSEEEEEE-------ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTS
T ss_pred cCCcccccc-------CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCC
Confidence 999886553 3489999999999998876543 57899999999999987665 6788999999999999
Q ss_pred cCCCCCCccc-cCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccch
Q 047861 254 QFQGKIPIGL-GNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 254 ~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
.+.+..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~ 230 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IE 230 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hh
Confidence 9987666665 4689999999999999864 2 33458999999999999994 56668999999999999999994 67
Q ss_pred hhHhhhcccccccccEEEccCCcce-eccCccccCC
Q 047861 333 QVLDIFSACGAYALESLVLRSCQFS-GHMTNQLGQF 367 (368)
Q Consensus 333 ~~l~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~ 367 (368)
..+..++ +|++|++++|+++ +.+|..++.+
T Consensus 231 ~~~~~l~-----~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 231 KALRFSQ-----NLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp TTCCCCT-----TCCEEECTTCCCBHHHHHHHHHTC
T ss_pred hHhhcCC-----CCCEEEccCCCccCcCHHHHHhcc
Confidence 7777777 9999999999998 7777776654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6e-27 Score=221.16 Aligned_cols=228 Identities=23% Similarity=0.222 Sum_probs=196.8
Q ss_pred CCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCC
Q 047861 115 SLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSL 194 (368)
Q Consensus 115 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 194 (368)
.+++|++|++++|.+++..|..+..+++|++|++++|.+..... +..+++|++|++++|.+...+ ..++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~-------~~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL-------VGPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE-------ECTTC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC-------CCCCc
Confidence 34589999999999999988899999999999999999876554 889999999999999887654 23899
Q ss_pred CEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCcccc-CCCCCCEEe
Q 047861 195 KVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLG-NLTFLRHLD 273 (368)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~ 273 (368)
+.|++++|.+.+..+. .+++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+..|..+. .+++|++|+
T Consensus 102 ~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp CEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 9999999999887664 357899999999999987776 678899999999999999987777775 789999999
Q ss_pred CCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccC
Q 047861 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRS 353 (368)
Q Consensus 274 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 353 (368)
+++|.+++. + ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..++ +|+.|++++
T Consensus 176 Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~-----~L~~L~l~~ 246 (487)
T 3oja_A 176 LQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ-----NLEHFDLRG 246 (487)
T ss_dssp CTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT-----TCCEEECTT
T ss_pred cCCCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCC-----CCCEEEcCC
Confidence 999999875 2 33468999999999999995 55558899999999999999996 676677777 999999999
Q ss_pred Ccce-eccCccccCC
Q 047861 354 CQFS-GHMTNQLGQF 367 (368)
Q Consensus 354 n~l~-~~~p~~~~~~ 367 (368)
|.++ +.+|..++.+
T Consensus 247 N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 247 NGFHCGTLRDFFSKN 261 (487)
T ss_dssp CCBCHHHHHHHHTTC
T ss_pred CCCcCcchHHHHHhC
Confidence 9998 7777776654
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.6e-25 Score=194.17 Aligned_cols=216 Identities=25% Similarity=0.303 Sum_probs=117.0
Q ss_pred CCCcccccEEecCCCCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeC
Q 047861 45 EDCCAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNL 124 (368)
Q Consensus 45 ~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 124 (368)
.+.|.|.|+.|.- .+..+.++++++ .++ .+|..+. +++++|++++|.++.. .+..+.++++|++|++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~--------~l~-~ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSK--------KLT-AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYL 68 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTS--------CCS-SCCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEEC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCC--------CCC-ccCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEEC
Confidence 4789999998853 234557777773 333 2444332 5677777777777754 3446677777777777
Q ss_pred CCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCC
Q 047861 125 SRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCEL 204 (368)
Q Consensus 125 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 204 (368)
++|.++...+..+..+++|++|++++|.+...+.. .+..+++|++|++++|.+
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------------~~~~l~~L~~L~l~~n~l 121 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG---------------------------VFDQLVNLAELRLDRNQL 121 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT---------------------------TTTTCSSCCEEECCSSCC
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh---------------------------HcccccCCCEEECCCCcc
Confidence 77777665444456666666666666655443321 122344444444444444
Q ss_pred ccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCC
Q 047861 205 HHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIP 284 (368)
Q Consensus 205 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 284 (368)
....+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 122 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CeeCHHHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 444444444455555555555555433322 34444455555555554443333334444555555555555444333
Q ss_pred hhccCCCCCCEEEccCCcc
Q 047861 285 GWLSKLNDLEFLSLRSNSL 303 (368)
Q Consensus 285 ~~l~~l~~L~~L~l~~n~l 303 (368)
..+..+++|+.|++++|.+
T Consensus 199 ~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTCTTCCEEECCSSCB
T ss_pred HHhccccCCCEEEecCCCe
Confidence 3344444555555554444
No 65
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.94 E-value=9.6e-26 Score=197.12 Aligned_cols=225 Identities=26% Similarity=0.269 Sum_probs=134.5
Q ss_pred CcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeC
Q 047861 94 LIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDL 173 (368)
Q Consensus 94 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 173 (368)
+..+++.++.+... .....+++|+.|+++++.++.. ..+..+++|++|++++|.+...+
T Consensus 21 l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~~---------------- 79 (272)
T 3rfs_A 21 TIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDIS---------------- 79 (272)
T ss_dssp HHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCCG----------------
T ss_pred HHHHHhcCcccccc---cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCch----------------
Confidence 33444444444422 2234455666666666655433 23445555555555555544322
Q ss_pred CCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCC
Q 047861 174 SQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGN 253 (368)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n 253 (368)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|
T Consensus 80 -------------~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n 143 (272)
T 3rfs_A 80 -------------ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG---VFDKLTNLTYLNLAHN 143 (272)
T ss_dssp -------------GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSS
T ss_pred -------------hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHH---HhccCCCCCEEECCCC
Confidence 234555566666666666555555556666666666666666654444 4556666677777766
Q ss_pred cCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchh
Q 047861 254 QFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQ 333 (368)
Q Consensus 254 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 333 (368)
.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 220 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 220 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---
Confidence 66654455556667777777777777665555566677777777777777765555666777777777777766643
Q ss_pred hHhhhcccccccccEEEccCCcceeccCccccCC
Q 047861 334 VLDIFSACGAYALESLVLRSCQFSGHMTNQLGQF 367 (368)
Q Consensus 334 ~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 367 (368)
++ +|+.++++.|.++|.+|.+++++
T Consensus 221 ----~~-----~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 ----CP-----GIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp ----TT-----TTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ----Cc-----HHHHHHHHHHhCCCcccCccccc
Confidence 22 56666677777777777776654
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=5.8e-28 Score=227.25 Aligned_cols=286 Identities=20% Similarity=0.150 Sum_probs=185.8
Q ss_pred cEEEEecCCCCCCCCCCCccc----ccccccccCCCCCcEEECCCCCCCCCc---CCcc-cCCCCCCCEEeCCCCcccCC
Q 047861 61 HVLQLNLGNPNPNNGTGSKLV----GKINLSLVDFKHLIHLDLSGNDFQGIQ---IPKY-LGSLKNLRYLNLSRANFAGV 132 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~-l~~l~~L~~L~l~~~~~~~~ 132 (368)
.++.+++++ +.+. ..++..+..+++|++|++++|.+++.. +... ....++|++|++++|.+++.
T Consensus 86 ~L~~L~L~~--------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 86 KIQKLSLQN--------CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp CCCEEECTT--------SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred ceeEEEccC--------CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 466777777 3444 245667777777777777777765321 1111 22345677777777777654
Q ss_pred c----chhcCCCCCCCEEeCCCCcCCcccchhhh----cCCCCCCEEeCCCCCCCCCc--hhhhhcCCCCCCCEEEccCC
Q 047861 133 T----PYQLGSLSNLQYLDLSQNYLLQVESFSWL----SGLSLLEHLDLSQADLSKAT--DWLLVTNSLSSLKVLNLSYC 202 (368)
Q Consensus 133 ~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~ 202 (368)
. +..+..+++|++|++++|.+......... ...++|++|++++|.+.... .+...+..+++|++|++++|
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 3 34455667888888888776544322211 13567888888888776541 23334556788888888888
Q ss_pred CCccCC-----CCCccCCCCCCeEEccCCCCCCcccc-ccchhcCCCCccEEEccCCcCCCCCCcccc-----CCCCCCE
Q 047861 203 ELHHFP-----PSSSANFSSLKALDLSQNQFNNSLFQ-FGSWVFGLHNLVFFDLSGNQFQGKIPIGLG-----NLTFLRH 271 (368)
Q Consensus 203 ~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~ 271 (368)
.+.+.. +.....+++|++|++++|.+++.... ++..+..+++|++|++++|.+.+..+..+. ..++|++
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 765532 11222467888888888887754211 122566678888888888877543332222 2358888
Q ss_pred EeCCCCcCCCC----CChhccCCCCCCEEEccCCcccccCCccccc-----CCCCCEEecCCCcCcc----cchhhHhhh
Q 047861 272 LDLSDNEFNSA----IPGWLSKLNDLEFLSLRSNSLQGKIPTSFVR-----LCKLTSIDLSFVKLSQ----DLSQVLDIF 338 (368)
Q Consensus 272 L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~----~~~~~l~~~ 338 (368)
|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 88888888764 3455666788888888888887654444432 6788888888888886 566666666
Q ss_pred cccccccccEEEccCCcceec
Q 047861 339 SACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~ 359 (368)
+ +|++|++++|++++.
T Consensus 398 ~-----~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 398 H-----SLRELDLSNNCLGDA 413 (461)
T ss_dssp C-----CCCEEECCSSSCCHH
T ss_pred C-----CccEEECCCCCCCHH
Confidence 7 888888888888754
No 67
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.5e-27 Score=224.47 Aligned_cols=299 Identities=20% Similarity=0.157 Sum_probs=196.7
Q ss_pred CcEEEEecCCCCCCCCCCCccccccccccc-CCC----CCcEEECCCCCCCCC---cCCcccCCCCCCCEEeCCCCcccC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLV-DFK----HLIHLDLSGNDFQGI---QIPKYLGSLKNLRYLNLSRANFAG 131 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~----~L~~L~l~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~ 131 (368)
.+++.+|+++ +.+.+..+..+. .++ +|++|++++|.++.. .++..+..+++|++|++++|.+++
T Consensus 56 ~~L~~L~Ls~--------n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 56 PALAELNLRS--------NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127 (461)
T ss_dssp TTCCEEECTT--------CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCcCEEeCCC--------CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence 4577777777 344443333222 233 577777777777642 245667777777788887777765
Q ss_pred Ccchhc-----CCCCCCCEEeCCCCcCCcccc---hhhhcCCCCCCEEeCCCCCCCCCc--hhhhhc-CCCCCCCEEEcc
Q 047861 132 VTPYQL-----GSLSNLQYLDLSQNYLLQVES---FSWLSGLSLLEHLDLSQADLSKAT--DWLLVT-NSLSSLKVLNLS 200 (368)
Q Consensus 132 ~~~~~l-----~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~-~~~~~L~~L~l~ 200 (368)
..+..+ ...++|++|++++|.+..... ...+..+++|++|++++|.+.... .+...+ ...++|++|+++
T Consensus 128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 207 (461)
T 1z7x_W 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE 207 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence 433332 234567788887777655432 233556778888888877764431 111111 135578888888
Q ss_pred CCCCccC----CCCCccCCCCCCeEEccCCCCCCcccc-ccc-hhcCCCCccEEEccCCcCCCC----CCccccCCCCCC
Q 047861 201 YCELHHF----PPSSSANFSSLKALDLSQNQFNNSLFQ-FGS-WVFGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLR 270 (368)
Q Consensus 201 ~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~-~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~ 270 (368)
+|.+... .+..+..+++|++|++++|.+++.... +.. ....+++|++|++++|.+++. ++..+..+++|+
T Consensus 208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence 8877664 234455678888888888887654321 111 223577888999988888743 456666788899
Q ss_pred EEeCCCCcCCCCCChhccC-----CCCCCEEEccCCccccc----CCcccccCCCCCEEecCCCcCcccchhhHhhhccc
Q 047861 271 HLDLSDNEFNSAIPGWLSK-----LNDLEFLSLRSNSLQGK----IPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSAC 341 (368)
Q Consensus 271 ~L~L~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~ 341 (368)
+|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+......
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 9999999886544433332 36899999999988765 46667788999999999999988777666652212
Q ss_pred ccccccEEEccCCccee----ccCccccC
Q 047861 342 GAYALESLVLRSCQFSG----HMTNQLGQ 366 (368)
Q Consensus 342 ~~~~L~~L~l~~n~l~~----~~p~~~~~ 366 (368)
..++|++|++++|++++ .+|..+..
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 23389999999999986 77776543
No 68
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=9.3e-24 Score=197.51 Aligned_cols=234 Identities=21% Similarity=0.290 Sum_probs=161.3
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 171 (368)
++|++|++++|.+++ +| .++++++|++|++++|++++. |.. ..+|++|++++|.+...+. +..+++|++|
T Consensus 131 ~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~l~~---~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEELPE---LQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSSCCC---CTTCTTCCEE
T ss_pred CCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCcCcc---ccCCCCCCEE
Confidence 467777777777663 45 467777777777777777653 432 2477777777777666542 6777788888
Q ss_pred eCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEcc
Q 047861 172 DLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLS 251 (368)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 251 (368)
++++|.+...+. ..++|++|++++|.+... + .+..+++|++|++++|++++ .+. .+++|++|+++
T Consensus 201 ~l~~N~l~~l~~------~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~-l~~------~~~~L~~L~l~ 265 (454)
T 1jl5_A 201 YADNNSLKKLPD------LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKT-LPD------LPPSLEALNVR 265 (454)
T ss_dssp ECCSSCCSSCCC------CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCS------CCTTCCEEECC
T ss_pred ECCCCcCCcCCC------CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCc-ccc------cccccCEEECC
Confidence 888877766543 235788888888877744 3 37778888888888888875 222 23678888888
Q ss_pred CCcCCCCCCccccCCCCCCEEeCCCCcCCC--CCChhc-------------cCC-CCCCEEEccCCcccccCCcccccCC
Q 047861 252 GNQFQGKIPIGLGNLTFLRHLDLSDNEFNS--AIPGWL-------------SKL-NDLEFLSLRSNSLQGKIPTSFVRLC 315 (368)
Q Consensus 252 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l-------------~~l-~~L~~L~l~~n~l~~~~~~~l~~l~ 315 (368)
+|.+.+ +|.. +++|++|++++|.+++ .+|..+ ..+ ++|++|++++|++++ +|.. ++
T Consensus 266 ~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~ 337 (454)
T 1jl5_A 266 DNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PP 337 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CC
Confidence 888874 4442 3677778887777765 222211 122 477777777777774 5543 57
Q ss_pred CCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCccee--ccCccccCC
Q 047861 316 KLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSG--HMTNQLGQF 367 (368)
Q Consensus 316 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~~ 367 (368)
+|+.|++++|.+++ +|. .++ +|++|++++|++++ .+|.+++++
T Consensus 338 ~L~~L~L~~N~l~~-lp~---~l~-----~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 338 RLERLIASFNHLAE-VPE---LPQ-----NLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TCCEEECCSSCCSC-CCC---CCT-----TCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred cCCEEECCCCcccc-ccc---hhh-----hccEEECCCCCCCcCCCChHHHHhh
Confidence 88899999988884 554 234 89999999999998 888887654
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=1.6e-26 Score=208.40 Aligned_cols=271 Identities=20% Similarity=0.169 Sum_probs=176.5
Q ss_pred CCCCcccccEEecCCCCcEEEEecCCCCCCCCCCCcccccccccccCC--CCCcEEECCCCCCCCCcCCcccCCCCCCCE
Q 047861 44 DEDCCAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDF--KHLIHLDLSGNDFQGIQIPKYLGSLKNLRY 121 (368)
Q Consensus 44 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 121 (368)
+..|.+|.++.++ ...++.+|++++ .+. +..+..+ ++++.|++++|.+.+. .+ .+..+++|++
T Consensus 33 ~~vc~~W~~~~~~--~~~~~~l~l~~~--------~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~ 97 (336)
T 2ast_B 33 SGVCKRWYRLASD--ESLWQTLDLTGK--------NLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQH 97 (336)
T ss_dssp TSSCHHHHHHHTC--STTSSEEECTTC--------BCC---HHHHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCE
T ss_pred HHHHHHHHHHhcC--chhheeeccccc--------cCC---HHHHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCE
Confidence 3456689988775 345778899883 443 3445566 8899999999988864 33 3567899999
Q ss_pred EeCCCCcccCC-cchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCC-CCCCCchhhhhcCCCCCCCEEEc
Q 047861 122 LNLSRANFAGV-TPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQA-DLSKATDWLLVTNSLSSLKVLNL 199 (368)
Q Consensus 122 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l 199 (368)
|++++|.+++. ++..+..+++|++|++++|.+..... ..+..+++|++|++++| .+... .
T Consensus 98 L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~-~---------------- 159 (336)
T 2ast_B 98 MDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEF-A---------------- 159 (336)
T ss_dssp EECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHH-H----------------
T ss_pred EEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHH-H----------------
Confidence 99999988765 66777888888888888887553322 22455666666666665 23221 1
Q ss_pred cCCCCccCCCCCccCCCCCCeEEccCC-CCCCc-cccccchhcCCC-CccEEEccCC--cCC-CCCCccccCCCCCCEEe
Q 047861 200 SYCELHHFPPSSSANFSSLKALDLSQN-QFNNS-LFQFGSWVFGLH-NLVFFDLSGN--QFQ-GKIPIGLGNLTFLRHLD 273 (368)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~~~~~~-~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~ 273 (368)
.+..+..+++|++|++++| .+++. .+. .+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 160 --------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 160 --------LQTLLSSCSRLDELNLSWCFDFTEKHVQV---AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp --------HHHHHHHCTTCCEEECCCCTTCCHHHHHH---HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred --------HHHHHhcCCCCCEEcCCCCCCcChHHHHH---HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 1122334555666666666 55542 222 455666 7777777776 333 23455556677777777
Q ss_pred CCCCc-CCCCCChhccCCCCCCEEEccCCc-ccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEc
Q 047861 274 LSDNE-FNSAIPGWLSKLNDLEFLSLRSNS-LQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVL 351 (368)
Q Consensus 274 L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l 351 (368)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| ++......+.. +++.|++
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~-------~l~~L~l 300 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE-------ALPHLQI 300 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH-------HSTTSEE
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh-------hCcceEE
Confidence 77777 666666677777888888888873 33333345677888888888888 55544333331 4666778
Q ss_pred cCCcceeccCccccC
Q 047861 352 RSCQFSGHMTNQLGQ 366 (368)
Q Consensus 352 ~~n~l~~~~p~~~~~ 366 (368)
++|++++..|+.+++
T Consensus 301 ~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 301 NCSHFTTIARPTIGN 315 (336)
T ss_dssp SCCCSCCTTCSSCSS
T ss_pred ecccCccccCCcccc
Confidence 888888888877654
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.9e-24 Score=189.42 Aligned_cols=208 Identities=28% Similarity=0.249 Sum_probs=148.1
Q ss_pred CCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEe
Q 047861 93 HLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLD 172 (368)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 172 (368)
+|++|++++|.+++. .+..+.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 29 ~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------------- 87 (276)
T 2z62_A 29 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-------------------- 87 (276)
T ss_dssp TCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------------------
T ss_pred CccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc--------------------
Confidence 455555555555532 22345555555555555555554444444445555555555544
Q ss_pred CCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCc-cccccchhcCCCCccEEEcc
Q 047861 173 LSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNS-LFQFGSWVFGLHNLVFFDLS 251 (368)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~L~~L~l~ 251 (368)
+...+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+. .+..+++|++|+++
T Consensus 88 -----l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~---~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 88 -----IQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLS 157 (276)
T ss_dssp -----CCEECT--TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECC
T ss_pred -----cCccCh--hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCch---hhccCCCCCEEECC
Confidence 433321 1346788899999999999888877788999999999999998763 355 78889999999999
Q ss_pred CCcCCCCCCccccCCCCCC----EEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcC
Q 047861 252 GNQFQGKIPIGLGNLTFLR----HLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKL 327 (368)
Q Consensus 252 ~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 327 (368)
+|.+.+..+..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 9999866666666666666 89999999986554444 445899999999999866566678899999999999999
Q ss_pred cccch
Q 047861 328 SQDLS 332 (368)
Q Consensus 328 ~~~~~ 332 (368)
.+..+
T Consensus 237 ~c~c~ 241 (276)
T 2z62_A 237 DCSCP 241 (276)
T ss_dssp CCCTT
T ss_pred cccCC
Confidence 87654
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.7e-23 Score=180.52 Aligned_cols=204 Identities=23% Similarity=0.277 Sum_probs=166.1
Q ss_pred CCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEe
Q 047861 93 HLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLD 172 (368)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 172 (368)
..++++++++.++ .+|..+. +++++|++++|++++..+..+..+++|++|++++|.+..++..
T Consensus 17 ~~~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~------------- 79 (270)
T 2o6q_A 17 NKNSVDCSSKKLT--AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG------------- 79 (270)
T ss_dssp TTTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT-------------
T ss_pred CCCEEEccCCCCC--ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh-------------
Confidence 4678888888877 3565443 5788888888888777666677777777777777765443321
Q ss_pred CCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccC
Q 047861 173 LSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSG 252 (368)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 252 (368)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 80 --------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~ 142 (270)
T 2o6q_A 80 --------------IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGY 142 (270)
T ss_dssp --------------TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCS
T ss_pred --------------hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCC
Confidence 235677888888888888888888888999999999999999877666 678999999999999
Q ss_pred CcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCccc
Q 047861 253 NQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 253 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+...
T Consensus 143 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 143 NELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999866666688999999999999999987777788999999999999999966666788999999999999998654
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.2e-25 Score=191.55 Aligned_cols=210 Identities=24% Similarity=0.278 Sum_probs=131.8
Q ss_pred cccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCC
Q 047861 87 SLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLS 166 (368)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 166 (368)
.+..+++|+.|+++++.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+...+... +..++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~ 109 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKS--V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGV-FDKLT 109 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTT-TTTCT
T ss_pred ccccccceeeeeeCCCCccc--c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhH-hcCCc
Confidence 45678999999999999874 3 4578899999999999999875 47889999999999999877654321 44555
Q ss_pred CCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCcc
Q 047861 167 LLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLV 246 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 246 (368)
+|++|++++|.+. +..+..+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 110 ~L~~L~L~~n~l~--------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~ 160 (272)
T 3rfs_A 110 NLKELVLVENQLQ--------------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLT 160 (272)
T ss_dssp TCCEEECTTSCCC--------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred CCCEEECCCCcCC--------------------------ccCHHHhccCCCCCEEECCCCccCccCHH---HhccCccCC
Confidence 5555555555544 44444444455555555555555443333 344555555
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCc
Q 047861 247 FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVK 326 (368)
Q Consensus 247 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 326 (368)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK 233 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHh
Confidence 55555555554444444555556666666665555444445555666666666665542 23455566666666
Q ss_pred CcccchhhHhhh
Q 047861 327 LSQDLSQVLDIF 338 (368)
Q Consensus 327 l~~~~~~~l~~~ 338 (368)
++|.+|..++.+
T Consensus 234 ~~g~ip~~~~~~ 245 (272)
T 3rfs_A 234 HSGVVRNSAGSV 245 (272)
T ss_dssp TGGGBBCTTSCB
T ss_pred CCCcccCccccc
Confidence 666666555543
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.8e-25 Score=199.31 Aligned_cols=272 Identities=19% Similarity=0.179 Sum_probs=209.6
Q ss_pred CCCCCCCCCCCcccccEEecCCCCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccC--
Q 047861 37 LASWNIGDEDCCAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLG-- 114 (368)
Q Consensus 37 ~~~w~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-- 114 (368)
...|.. ...|+.+..+........++.+++++ +.+ .+|..+... |++|++++|.++...++..+.
T Consensus 21 ~~~~~~-~~~c~~~~~~~~~~~~~~L~~l~l~~--------n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~ 87 (312)
T 1wwl_A 21 KPDWSS-AFNCLGAADVELYGGGRSLEYLLKRV--------DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFG 87 (312)
T ss_dssp SCCGGG-GGGSSSCSEEEEEEEEEECTTHHHHC--------CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHH
T ss_pred ccchHH-HhhhhccccEEEEccCCCceeEeecc--------ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHH
Confidence 345653 34455555443322234567777777 345 666666544 899999999886545777665
Q ss_pred -----CCCCCCEEeCCCCcccCCcchhc--CCCCCCCEEeCCCCcCCcccchhhhcCC-----CCCCEEeCCCCCCCCCc
Q 047861 115 -----SLKNLRYLNLSRANFAGVTPYQL--GSLSNLQYLDLSQNYLLQVESFSWLSGL-----SLLEHLDLSQADLSKAT 182 (368)
Q Consensus 115 -----~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~ 182 (368)
++++|++|++++|.+++.+|..+ ..+++|++|++++|.+...+ ..+..+ ++|++|++++|.+...+
T Consensus 88 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD--AWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp HHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS--SHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred HHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh--HHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 78999999999999998888876 89999999999999988774 224444 89999999999998774
Q ss_pred hhhhhcCCCCCCCEEEccCCCCccC--CCC--CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCC
Q 047861 183 DWLLVTNSLSSLKVLNLSYCELHHF--PPS--SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGK 258 (368)
Q Consensus 183 ~~~~~~~~~~~L~~L~l~~~~~~~~--~~~--~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 258 (368)
. ..+..+++|++|++++|.+.+. .+. .+..+++|++|++++|.+++........+..+++|++|++++|.+.+.
T Consensus 166 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 166 C--EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp T--TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred H--HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 2 2557899999999999987653 112 237789999999999999843221112456789999999999999976
Q ss_pred CC-ccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCccc
Q 047861 259 IP-IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 259 ~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
.| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 64 45667899999999999998 6777666 8999999999999965 66 88999999999999999863
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.2e-23 Score=184.27 Aligned_cols=194 Identities=28% Similarity=0.303 Sum_probs=88.3
Q ss_pred cccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccc
Q 047861 79 KLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVES 158 (368)
Q Consensus 79 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (368)
.+.+..+..+.++++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+...+.
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 117 (276)
T 2z62_A 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (276)
T ss_dssp CCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred cccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCc
Confidence 34443344455555555555555555432 23344555555555555555554444444444444444444444322211
Q ss_pred hhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccC-CCCCccCCCCCCeEEccCCCCCCccccccc
Q 047861 159 FSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHF-PPSSSANFSSLKALDLSQNQFNNSLFQFGS 237 (368)
Q Consensus 159 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 237 (368)
. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+.
T Consensus 118 ~---------------------------~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~--- 167 (276)
T 2z62_A 118 F---------------------------PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT--- 167 (276)
T ss_dssp C---------------------------CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG---
T ss_pred h---------------------------hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH---
Confidence 0 123344455555555554442 244445555555555555555443333
Q ss_pred hhcCCCCcc----EEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc
Q 047861 238 WVFGLHNLV----FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 238 ~~~~~~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
.+..+++|+ .|++++|.+.+..+ ......+|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HhhhhhhccccceeeecCCCcccccCc-cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 222222222 45555555542222 2222234555555555555433334445555555555555544
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=6.7e-23 Score=180.55 Aligned_cols=204 Identities=22% Similarity=0.243 Sum_probs=157.5
Q ss_pred cccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCC
Q 047861 87 SLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLS 166 (368)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 166 (368)
.+.+++++++++++++.++ .+|..+. +.+++|++++|.+++..+..+..+++|++|++++|.+...+. ...++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCT
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCC
Confidence 4667889999999999888 4666653 689999999999988878888999999999999998877654 36788
Q ss_pred CCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCcc
Q 047861 167 LLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLV 246 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 246 (368)
+|++|++++|.+...+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+. .+..+++|+
T Consensus 78 ~L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~ 151 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG---LLTPTPKLE 151 (290)
T ss_dssp TCCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCC
T ss_pred cCCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh---hcccccCCC
Confidence 88888888888876543 445777888888888888877777777788888888888887765544 566777888
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc
Q 047861 247 FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 247 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
.|++++|+++...+..+..+++|++|++++|.++ .+|..+...++|+.+++++|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 8888888877544455567778888888888776 46666666777888888777664
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=8.9e-26 Score=207.44 Aligned_cols=249 Identities=20% Similarity=0.202 Sum_probs=143.0
Q ss_pred cccccccCCCCCcEEECCCCCCCCCc---CCcccCCCCCCCEEeCCCCc---ccCCcchhc-------CCCCCCCEEeCC
Q 047861 83 KINLSLVDFKHLIHLDLSGNDFQGIQ---IPKYLGSLKNLRYLNLSRAN---FAGVTPYQL-------GSLSNLQYLDLS 149 (368)
Q Consensus 83 ~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~---~~~~~~~~l-------~~l~~L~~L~l~ 149 (368)
.++..+..+++|++|++++|.++... ++..+..+++|++|++++|. +++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45566777888888888888776531 23346678888888888753 344445444 577888888888
Q ss_pred CCcCCccc---chhhhcCCCCCCEEeCCCCCCCCC--chhhhhcCCC---------CCCCEEEccCCCCccC-CC---CC
Q 047861 150 QNYLLQVE---SFSWLSGLSLLEHLDLSQADLSKA--TDWLLVTNSL---------SSLKVLNLSYCELHHF-PP---SS 211 (368)
Q Consensus 150 ~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~---------~~L~~L~l~~~~~~~~-~~---~~ 211 (368)
+|.+.... .+..+..+++|++|++++|.+... ..+...+..+ ++|++|++++|.+... .+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 88766532 122356677777777777776432 1122222223 5666666666665521 11 23
Q ss_pred ccCCCCCCeEEccCCCCCCccc-cccc-hhcCCCCccEEEccCCcCC----CCCCccccCCCCCCEEeCCCCcCCCC---
Q 047861 212 SANFSSLKALDLSQNQFNNSLF-QFGS-WVFGLHNLVFFDLSGNQFQ----GKIPIGLGNLTFLRHLDLSDNEFNSA--- 282 (368)
Q Consensus 212 ~~~~~~L~~L~l~~n~l~~~~~-~~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~--- 282 (368)
+..+++|++|++++|.++.... .+.. .+..+++|++|++++|.++ ..+|..+..+++|++|++++|.+++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 3445566666666666652110 0111 3455666666666666653 23455555666666666666666543
Q ss_pred -CChhcc--CCCCCCEEEccCCcccc----cCCccc-ccCCCCCEEecCCCcCcccc
Q 047861 283 -IPGWLS--KLNDLEFLSLRSNSLQG----KIPTSF-VRLCKLTSIDLSFVKLSQDL 331 (368)
Q Consensus 283 -~~~~l~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~ 331 (368)
++..+. .+++|++|++++|.+++ .+|..+ .++++|+.|++++|.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 233332 25666666666666664 255554 44566666666666666554
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=5.2e-25 Score=200.49 Aligned_cols=258 Identities=19% Similarity=0.184 Sum_probs=192.2
Q ss_pred CcccccccccccCCCCCcEEECCCCCCCCCcCC----cccCCCC-CCCEEeCCCCcccCCcchhcCCC-----CCCCEEe
Q 047861 78 SKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIP----KYLGSLK-NLRYLNLSRANFAGVTPYQLGSL-----SNLQYLD 147 (368)
Q Consensus 78 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~ 147 (368)
+.+.+.+|..+...++|++|++++|.+++. .+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|+
T Consensus 8 n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 8 HPGSNPVEEFTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp CTTCCHHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred ccchHHHHHHHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 678888888887778899999999998864 33 5677888 89999999999998877766654 9999999
Q ss_pred CCCCcCCcccchh---hhcCC-CCCCEEeCCCCCCCCCc--hhhhhcCC-CCCCCEEEccCCCCccCCCCC----ccCCC
Q 047861 148 LSQNYLLQVESFS---WLSGL-SLLEHLDLSQADLSKAT--DWLLVTNS-LSSLKVLNLSYCELHHFPPSS----SANFS 216 (368)
Q Consensus 148 l~~~~~~~~~~~~---~~~~l-~~L~~L~l~~~~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~----~~~~~ 216 (368)
+++|.+....... .+..+ ++|++|++++|.+.... .+...+.. .++|++|++++|.+.+..... +...+
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 9999977655432 24455 89999999999987663 23334455 469999999999888654332 23444
Q ss_pred -CCCeEEccCCCCCCcccc-ccchhcCC-CCccEEEccCCcCCCC----CCccccC-CCCCCEEeCCCCcCCCCCC----
Q 047861 217 -SLKALDLSQNQFNNSLFQ-FGSWVFGL-HNLVFFDLSGNQFQGK----IPIGLGN-LTFLRHLDLSDNEFNSAIP---- 284 (368)
Q Consensus 217 -~L~~L~l~~n~l~~~~~~-~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~l~~-l~~L~~L~L~~n~l~~~~~---- 284 (368)
+|++|++++|.+++..+. +...+... ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++..+
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 899999999998866543 22234455 5899999999998753 3444444 4589999999999987654
Q ss_pred hhccCCCCCCEEEccCCccccc-------CCcccccCCCCCEEecCCCcCcccchhhHh
Q 047861 285 GWLSKLNDLEFLSLRSNSLQGK-------IPTSFVRLCKLTSIDLSFVKLSQDLSQVLD 336 (368)
Q Consensus 285 ~~l~~l~~L~~L~l~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 336 (368)
..+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+..+..+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 3346678999999999984422 344567788899999999999887554443
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.8e-25 Score=204.14 Aligned_cols=248 Identities=19% Similarity=0.202 Sum_probs=191.0
Q ss_pred CCcccCCCCCCCEEeCCCCcccCCcch----hcCCCCCCCEEeCCCCcCCcccc--h-------hhhcCCCCCCEEeCCC
Q 047861 109 IPKYLGSLKNLRYLNLSRANFAGVTPY----QLGSLSNLQYLDLSQNYLLQVES--F-------SWLSGLSLLEHLDLSQ 175 (368)
Q Consensus 109 ~~~~l~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~--~-------~~~~~l~~L~~L~l~~ 175 (368)
++..+..+++|++|++++|.++...+. .+..+++|++|++++|.+..... + ..+..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 566777889999999999998876443 46789999999999986543221 1 1247889999999999
Q ss_pred CCCCCC--chhhhhcCCCCCCCEEEccCCCCccCCCCCcc----CC---------CCCCeEEccCCCCC-Cccccccchh
Q 047861 176 ADLSKA--TDWLLVTNSLSSLKVLNLSYCELHHFPPSSSA----NF---------SSLKALDLSQNQFN-NSLFQFGSWV 239 (368)
Q Consensus 176 ~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~n~l~-~~~~~~~~~~ 239 (368)
|.+... ..++..+..+++|+.|++++|.+....+..+. .+ ++|++|++++|+++ ...+.+...+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 998764 22344567789999999999988654433333 23 89999999999997 3445443467
Q ss_pred cCCCCccEEEccCCcCCC-----CCCccccCCCCCCEEeCCCCcCC----CCCChhccCCCCCCEEEccCCccccc----
Q 047861 240 FGLHNLVFFDLSGNQFQG-----KIPIGLGNLTFLRHLDLSDNEFN----SAIPGWLSKLNDLEFLSLRSNSLQGK---- 306 (368)
Q Consensus 240 ~~~~~L~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~l~~n~l~~~---- 306 (368)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..++..+..+++|++|+|++|.+++.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 788899999999998872 23336778899999999999986 45677788899999999999998865
Q ss_pred CCccccc--CCCCCEEecCCCcCcc----cchhhH-hhhcccccccccEEEccCCcceeccC
Q 047861 307 IPTSFVR--LCKLTSIDLSFVKLSQ----DLSQVL-DIFSACGAYALESLVLRSCQFSGHMT 361 (368)
Q Consensus 307 ~~~~l~~--l~~L~~L~l~~n~l~~----~~~~~l-~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (368)
++..+.. +++|+.|+|++|.+++ .+|..+ ..++ +|++|++++|++++..|
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~-----~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-----DLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT-----TCCEEECTTSBSCTTSH
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC-----CceEEEccCCcCCcchh
Confidence 5666643 8999999999999998 466666 4456 99999999999987654
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.6e-22 Score=175.86 Aligned_cols=204 Identities=26% Similarity=0.294 Sum_probs=176.7
Q ss_pred cCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCC
Q 047861 113 LGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLS 192 (368)
Q Consensus 113 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 192 (368)
+.++++++++++++++++.. |..+. +++++|++++|.+...... .+..+++|++|++++|.+...+.. ..++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----~~l~ 77 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQVD----GTLP 77 (290)
T ss_dssp EECSTTCCEEECTTSCCSSC-CSCCC--TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEECC----SCCT
T ss_pred ccccCCccEEECCCCCCCcC-CCCCC--CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccCC----CCCC
Confidence 56789999999999999876 54443 7899999999998776543 388999999999999998876532 6889
Q ss_pred CCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEE
Q 047861 193 SLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272 (368)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 272 (368)
+|+.|++++|.+... +..+..+++|+.|++++|++++..+. .+.++++|++|++++|.+.+..+..+..+++|+.|
T Consensus 78 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 78 VLGTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp TCCEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 999999999999855 45678899999999999999976666 78899999999999999997666778889999999
Q ss_pred eCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcc
Q 047861 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
++++|++++..+..+..+++|++|++++|+++ .+|..+...++|+.|++++|++..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 99999998766667788999999999999998 788888889999999999998875
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=4.7e-22 Score=191.81 Aligned_cols=234 Identities=24% Similarity=0.216 Sum_probs=167.5
Q ss_pred CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS 139 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (368)
.+++.|++++| .+. .+|. .+++|++|++++|.++. +|. .+++|++|++++|.+++. |. .
T Consensus 61 ~~L~~L~L~~N--------~l~-~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l-~~---~ 119 (622)
T 3g06_A 61 AHITTLVIPDN--------NLT-SLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHL-PA---L 119 (622)
T ss_dssp TTCSEEEECSC--------CCS-CCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEEECSCCCCCC-CC---C
T ss_pred CCCcEEEecCC--------CCC-CCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEECcCCcCCCC-CC---C
Confidence 45777888774 333 2333 45677777777777763 444 456777777777766654 22 3
Q ss_pred CCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhc--------------CCCCCCCEEEccCCCCc
Q 047861 140 LSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVT--------------NSLSSLKVLNLSYCELH 205 (368)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--------------~~~~~L~~L~l~~~~~~ 205 (368)
+++|++|++++|.+..++. .+++|++|++++|.+...+.....+ ..+++|+.|++++|.+.
T Consensus 120 l~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPV-----LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred CCCcCEEECCCCCCCcCCC-----CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC
Confidence 4566666666666555432 1355555555555554433222112 23488999999999888
Q ss_pred cCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCCh
Q 047861 206 HFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPG 285 (368)
Q Consensus 206 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 285 (368)
+.+. .+++|+.|++++|.++.. +. .+++|++|++++|.+++ +| ..+++|+.|++++|.++. +|.
T Consensus 195 ~l~~----~~~~L~~L~L~~N~l~~l-~~------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~ 258 (622)
T 3g06_A 195 SLPT----LPSELYKLWAYNNRLTSL-PA------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM 258 (622)
T ss_dssp CCCC----CCTTCCEEECCSSCCSSC-CC------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC
T ss_pred CCCC----ccchhhEEECcCCccccc-CC------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc
Confidence 7543 247999999999998843 32 24789999999999984 55 456899999999999985 554
Q ss_pred hccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhc
Q 047861 286 WLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFS 339 (368)
Q Consensus 286 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~ 339 (368)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..++
T Consensus 259 ---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 ---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6789999999999999 7899999999999999999999999888887665
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.9e-24 Score=194.04 Aligned_cols=263 Identities=18% Similarity=0.156 Sum_probs=176.5
Q ss_pred EEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcc----hhcCCCC-CCCEEeCCCCcCCcccchh---hhcCC-C
Q 047861 96 HLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTP----YQLGSLS-NLQYLDLSQNYLLQVESFS---WLSGL-S 166 (368)
Q Consensus 96 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~---~~~~l-~ 166 (368)
+++++.|.+++. +|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+....... .+... +
T Consensus 2 ~~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 467788888875 67777767778888888888887766 5666777 8888888888876654332 12222 8
Q ss_pred CCCEEeCCCCCCCCCc--hhhhhcCCC-CCCCEEEccCCCCccCCCCCcc----C-CCCCCeEEccCCCCCCcccc-ccc
Q 047861 167 LLEHLDLSQADLSKAT--DWLLVTNSL-SSLKVLNLSYCELHHFPPSSSA----N-FSSLKALDLSQNQFNNSLFQ-FGS 237 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~L~l~~n~l~~~~~~-~~~ 237 (368)
+|++|++++|.+.... .+...+..+ ++|++|++++|.+.+..+..+. . .++|++|++++|.+++.... +..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8888888888876552 223334445 7888888888888776654332 2 35888888888888754432 222
Q ss_pred hhcCCC-CccEEEccCCcCCCCCCcc----ccCC-CCCCEEeCCCCcCCCCC----ChhccC-CCCCCEEEccCCccccc
Q 047861 238 WVFGLH-NLVFFDLSGNQFQGKIPIG----LGNL-TFLRHLDLSDNEFNSAI----PGWLSK-LNDLEFLSLRSNSLQGK 306 (368)
Q Consensus 238 ~~~~~~-~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~----~~~l~~-l~~L~~L~l~~n~l~~~ 306 (368)
.+...+ +|++|++++|.+++..+.. +..+ ++|++|++++|.+++.. +..+.. .++|++|++++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 344554 8888888888887555433 3344 48888888888887643 333433 45888888888888754
Q ss_pred CC----cccccCCCCCEEecCCCcCcccchhhHhhhc--ccccccccEEEccCCcceec
Q 047861 307 IP----TSFVRLCKLTSIDLSFVKLSQDLSQVLDIFS--ACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 307 ~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~--~~~~~~L~~L~l~~n~l~~~ 359 (368)
.+ ..+..+++|+.|++++|.+.+..+..+..+. ...+++|++||+++|++.+.
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 3446678888888888885544333222221 12344788888888888765
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=5.5e-22 Score=176.35 Aligned_cols=195 Identities=24% Similarity=0.360 Sum_probs=151.9
Q ss_pred ccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCC
Q 047861 88 LVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSL 167 (368)
Q Consensus 88 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 167 (368)
...+++|++|+++++.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+...+ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~---~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS---AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG---GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch---hhcCCCC
Confidence 3467888999999888874 44 57788899999999988887644 888889999999998877664 3778888
Q ss_pred CCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccE
Q 047861 168 LEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVF 247 (368)
Q Consensus 168 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 247 (368)
|++|++++|.+...+. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++.. .+..+++|+.
T Consensus 109 L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~ 177 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-----PLANLSKLTT 177 (308)
T ss_dssp CCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-----GGTTCTTCCE
T ss_pred CCEEECCCCCCCCchh----hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-----hhcCCCCCCE
Confidence 8888888888877642 5678888888888888877654 677888888888888887532 2567888888
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccc
Q 047861 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQG 305 (368)
Q Consensus 248 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 305 (368)
|++++|.+.+..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.+++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 8888888874332 677888888888888887643 36788888888888888764
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.4e-21 Score=173.78 Aligned_cols=209 Identities=23% Similarity=0.337 Sum_probs=164.5
Q ss_pred EEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCC
Q 047861 96 HLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQ 175 (368)
Q Consensus 96 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 175 (368)
.+.+..+.+++. .....+++|++|+++++.+... + .+..+++|++|++++|.+...+. +..+++|++|++++
T Consensus 23 ~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 23 KIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSG 94 (308)
T ss_dssp HHHTTCSSTTSE---ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCS
T ss_pred HHHhCCCCcCce---ecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccC
Confidence 344555555432 2244678999999999988875 3 67889999999999998877665 78899999999999
Q ss_pred CCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcC
Q 047861 176 ADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQF 255 (368)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 255 (368)
|.+...+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 95 n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 95 NPLKNVS----AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp CCCSCCG----GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCC
T ss_pred CcCCCch----hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcC
Confidence 9887764 45678899999999998877543 7788899999999998875432 66788899999999988
Q ss_pred CCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcc
Q 047861 256 QGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 256 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 329 (368)
.+ ++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|.+++
T Consensus 164 ~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 164 SD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 74 333 7788899999999998876432 778889999999999888544 37888889999999988876
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.2e-21 Score=167.40 Aligned_cols=181 Identities=29% Similarity=0.287 Sum_probs=155.7
Q ss_pred CCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCe
Q 047861 141 SNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKA 220 (368)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 220 (368)
...++++++++.+..++.. -.+++++|++++|.+...... .+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~----~~~~l~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG----IPADTEKLDLQSTGLATLSDA--TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC----CCTTCCEEECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCCCCccccCCC----CCCCCCEEEccCCCcCccCHh--HhcCcccCCEEECCCCcCCccCHhHhccCCcCCE
Confidence 4678899999988877743 236899999999999877432 4578899999999999999988888899999999
Q ss_pred EEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccC
Q 047861 221 LDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRS 300 (368)
Q Consensus 221 L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 300 (368)
|++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 88 L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 88 LGLANNQLASLPLG---VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp EECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCcccccChh---HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 99999999876665 678899999999999999866666678899999999999999877666788999999999999
Q ss_pred CcccccCCcccccCCCCCEEecCCCcCccc
Q 047861 301 NSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 301 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
|++++..+..+..+++|+.|++++|++...
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999977777888999999999999999876
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.9e-24 Score=190.73 Aligned_cols=264 Identities=19% Similarity=0.172 Sum_probs=157.9
Q ss_pred CCCCCCCCCCCCCcccccEEecCCC-----------CcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCC
Q 047861 35 SRLASWNIGDEDCCAWGGVVCNNFT-----------GHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGND 103 (368)
Q Consensus 35 ~~~~~w~~~~~~~c~w~gv~c~~~~-----------~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 103 (368)
..+..|.....++..|..+...... ..++.+++++ +.+.+..+. +..+++|++|++++|.
T Consensus 34 ~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~--------n~l~~~~~~-~~~~~~L~~L~L~~~~ 104 (336)
T 2ast_B 34 GVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPR--------SFMDQPLAE-HFSPFRVQHMDLSNSV 104 (336)
T ss_dssp SSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTT--------CEECSCCCS-CCCCBCCCEEECTTCE
T ss_pred HHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCC--------ccccccchh-hccCCCCCEEEccCCC
Confidence 3455665322344557666554321 5688999988 566666554 5679999999999999
Q ss_pred CCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCC-cCCcccchhhhcCCCCCCEEeCCCC-CCCCC
Q 047861 104 FQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQN-YLLQVESFSWLSGLSLLEHLDLSQA-DLSKA 181 (368)
Q Consensus 104 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~ 181 (368)
+++..++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+........+..+++|++|++++| .+...
T Consensus 105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 184 (336)
T 2ast_B 105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184 (336)
T ss_dssp ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence 875447778899999999999999999888889999999999999999 5654444445778888999998888 66532
Q ss_pred chhhhhcCCCC-CCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCC-CccccccchhcCCCCccEEEccCCc-CCCC
Q 047861 182 TDWLLVTNSLS-SLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFN-NSLFQFGSWVFGLHNLVFFDLSGNQ-FQGK 258 (368)
Q Consensus 182 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ 258 (368)
.+...+..++ +|++|++++|.+ .++ +..+. .+..+++|++|++++|. +++.
T Consensus 185 -~~~~~~~~l~~~L~~L~l~~~~~----------------------~~~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 185 -HVQVAVAHVSETITQLNLSGYRK----------------------NLQKSDLST---LVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp -HHHHHHHHSCTTCCEEECCSCGG----------------------GSCHHHHHH---HHHHCTTCSEEECTTCTTCCGG
T ss_pred -HHHHHHHhcccCCCEEEeCCCcc----------------------cCCHHHHHH---HHhhCCCCCEEeCCCCCcCCHH
Confidence 1222334455 666666665521 122 11111 33344455555555554 3333
Q ss_pred CCccccCCCCCCEEeCCCCc-CCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHh
Q 047861 259 IPIGLGNLTFLRHLDLSDNE-FNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLD 336 (368)
Q Consensus 259 ~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 336 (368)
.+..+..+++|++|++++|. ++......+..+++|++|++++| ++......+. .+++.|++++|.+++..|..++
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 34444445555555555552 22222223445555555555555 3222111111 1234444555555555554433
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=178.76 Aligned_cols=235 Identities=19% Similarity=0.165 Sum_probs=139.6
Q ss_pred CCCCCcEEECCCCCCCCCcCCcc--cCCCCCCCEEeCCCCcccCCcchhc--CCCCCCCEEeCCCCcCCcccchhhhcCC
Q 047861 90 DFKHLIHLDLSGNDFQGIQIPKY--LGSLKNLRYLNLSRANFAGVTPYQL--GSLSNLQYLDLSQNYLLQVESFSWLSGL 165 (368)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~l 165 (368)
....++.+.+.++.++...+... ...+++|++|++++|.+++..|..+ ..+++|++|++++|.+.......
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~----- 136 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL----- 136 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH-----
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh-----
Confidence 34568889998887754322211 1234679999999999998888887 88999999999999876532100
Q ss_pred CCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccc-cccchhcCCCC
Q 047861 166 SLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLF-QFGSWVFGLHN 244 (368)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~ 244 (368)
+ ...+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+... .....+..+++
T Consensus 137 ----------------~--~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 198 (310)
T 4glp_A 137 ----------------A--ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA 198 (310)
T ss_dssp ----------------H--HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC
T ss_pred ----------------H--HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC
Confidence 0 0011245555555555555555555555566666666666665543110 00002345556
Q ss_pred ccEEEccCCcCCCCCCc----cccCCCCCCEEeCCCCcCCCCCChhccCC---CCCCEEEccCCcccccCCcccccCCCC
Q 047861 245 LVFFDLSGNQFQGKIPI----GLGNLTFLRHLDLSDNEFNSAIPGWLSKL---NDLEFLSLRSNSLQGKIPTSFVRLCKL 317 (368)
Q Consensus 245 L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L 317 (368)
|++|++++|.++ .++. .+..+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|
T Consensus 199 L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L 274 (310)
T 4glp_A 199 IQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKL 274 (310)
T ss_dssp CCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCC
T ss_pred CCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCC
Confidence 666666666664 2222 13455666666666666665555544444 46666666666666 5555443 566
Q ss_pred CEEecCCCcCcccchhhHhhhcccccccccEEEccCCccee
Q 047861 318 TSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSG 358 (368)
Q Consensus 318 ~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~ 358 (368)
+.|++++|++++. |. +..++ +|++|++++|+++.
T Consensus 275 ~~L~Ls~N~l~~~-~~-~~~l~-----~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSNRLNRA-PQ-PDELP-----EVDNLTLDGNPFLV 308 (310)
T ss_dssp SCEECCSCCCCSC-CC-TTSCC-----CCSCEECSSTTTSC
T ss_pred CEEECCCCcCCCC-ch-hhhCC-----CccEEECcCCCCCC
Confidence 7777777766652 21 23344 67777777776653
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=5.9e-21 Score=164.66 Aligned_cols=181 Identities=24% Similarity=0.288 Sum_probs=152.6
Q ss_pred CCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCE
Q 047861 117 KNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKV 196 (368)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 196 (368)
...++++++++.++.. |..+. +++++|++++|.+....... +..+++|++|++++|.+...+. ..+..+++|++
T Consensus 14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSA--GVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCT--TTTTTCTTCCE
T ss_pred CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCH--hHhccCCcCCE
Confidence 3567899999988865 54444 68999999999987766543 7889999999999999887643 24578899999
Q ss_pred EEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCC
Q 047861 197 LNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSD 276 (368)
Q Consensus 197 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 276 (368)
|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG---VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh---HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 99999999998888888999999999999999866655 577899999999999999866666788999999999999
Q ss_pred CcCCCCCChhccCCCCCCEEEccCCccccc
Q 047861 277 NEFNSAIPGWLSKLNDLEFLSLRSNSLQGK 306 (368)
Q Consensus 277 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 306 (368)
|.+++..+..+..+++|++|++++|.+...
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999887777888999999999999998754
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=177.98 Aligned_cols=230 Identities=22% Similarity=0.241 Sum_probs=172.6
Q ss_pred cEEEEecCCCCCCCCCCCcccccc-cc--cccCCCCCcEEECCCCCCCCCcCCccc--CCCCCCCEEeCCCCcccCCcc-
Q 047861 61 HVLQLNLGNPNPNNGTGSKLVGKI-NL--SLVDFKHLIHLDLSGNDFQGIQIPKYL--GSLKNLRYLNLSRANFAGVTP- 134 (368)
Q Consensus 61 ~v~~l~l~~~~~~~~~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~- 134 (368)
+++.+++.+. .+.... .. .+..+++|++|++++|.+++. .|..+ ..+++|++|++++|.+++..+
T Consensus 65 ~l~~l~l~~~--------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 65 RVRRLTVGAA--------QVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp CCCEEEECSC--------CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred ceeEEEEeCC--------cCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhh
Confidence 4677777773 333211 11 123457799999999999876 67766 889999999999999987544
Q ss_pred ---hhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchh--hhhcCCCCCCCEEEccCCCCccCCC
Q 047861 135 ---YQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDW--LLVTNSLSSLKVLNLSYCELHHFPP 209 (368)
Q Consensus 135 ---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~ 209 (368)
..+..+++|++|++++|.+...+.. .+..+++|++|++++|.+...... ......+++|++|++++|.++....
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 214 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAHSPAFSCE-QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG 214 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCSSCCCCTT-SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH
T ss_pred hHHHHhhhccCCCEEEeeCCCcchhhHH-HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH
Confidence 3446789999999999998666543 378899999999999987543111 1123578899999999999864332
Q ss_pred C---CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChh
Q 047861 210 S---SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGW 286 (368)
Q Consensus 210 ~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 286 (368)
. .+..+++|++|++++|.+++..|.....+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++. |.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~- 289 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ- 289 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-
Confidence 1 2457799999999999999876652222333479999999999998 6777664 7999999999999863 33
Q ss_pred ccCCCCCCEEEccCCcccc
Q 047861 287 LSKLNDLEFLSLRSNSLQG 305 (368)
Q Consensus 287 l~~l~~L~~L~l~~n~l~~ 305 (368)
+..+++|+.|++++|++++
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 5788999999999999874
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=1.5e-21 Score=163.57 Aligned_cols=160 Identities=26% Similarity=0.251 Sum_probs=81.2
Q ss_pred CCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEE
Q 047861 193 SLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272 (368)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 272 (368)
+|++|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG---VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh---hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 445555555555444444444555555555555555433332 34445555555555555553333334555555555
Q ss_pred eCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEcc
Q 047861 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLR 352 (368)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 352 (368)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. + +|++|+++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~-----~l~~L~~~ 173 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------P-----GIRYLSEW 173 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------T-----TTHHHHHH
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC-------C-----CHHHHHHH
Confidence 55555555444444455555555555555555433334455555555555555544321 2 45555555
Q ss_pred CCcceeccCccccCC
Q 047861 353 SCQFSGHMTNQLGQF 367 (368)
Q Consensus 353 ~n~l~~~~p~~~~~~ 367 (368)
.|+++|.+|++++++
T Consensus 174 ~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 174 INKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHCTTTBBCTTSSB
T ss_pred HHhCCceeeccCccc
Confidence 555555555555543
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.7e-21 Score=166.77 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=106.3
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCc-ccCCcchhcCCCCCCCEEeCCC-CcCCcccchhhhcCCCCCC
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRAN-FAGVTPYQLGSLSNLQYLDLSQ-NYLLQVESFSWLSGLSLLE 169 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~ 169 (368)
++|++|++++|.+++. .+..+..+++|++|++++|. ++...+..+..+++|++|++++ |.+...+.. .+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCC
T ss_pred CcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCC
Confidence 3788999999988854 34467888899999998886 7777666778888888888887 776655432 255666666
Q ss_pred EEeCCCCCCCCCchhhhhcCCCCCCC---EEEccCC-CCccCCCCCccCCCCCC-eEEccCCCCCCccccccchhcCCCC
Q 047861 170 HLDLSQADLSKATDWLLVTNSLSSLK---VLNLSYC-ELHHFPPSSSANFSSLK-ALDLSQNQFNNSLFQFGSWVFGLHN 244 (368)
Q Consensus 170 ~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~ 244 (368)
+|++++|.+...+. +..+++|+ +|++++| .+....+..+..+++|+ +|++++|.++...+. .+.. ++
T Consensus 109 ~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~---~~~~-~~ 180 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY---AFNG-TK 180 (239)
T ss_dssp EEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTT---TTTT-CE
T ss_pred EEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHh---hcCC-CC
Confidence 66666666655432 23444444 5566555 55555555555555555 555555555422111 1222 44
Q ss_pred ccEEEccCCc-CCCCCCccccCC-CCCCEEeCCCCcCC
Q 047861 245 LVFFDLSGNQ-FQGKIPIGLGNL-TFLRHLDLSDNEFN 280 (368)
Q Consensus 245 L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~ 280 (368)
|++|++++|. +.+..+..+..+ ++|+.|++++|.++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 5555555552 442223334444 44444444444444
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4.2e-21 Score=164.34 Aligned_cols=197 Identities=18% Similarity=0.201 Sum_probs=118.8
Q ss_pred CCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCc-CCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCC
Q 047861 117 KNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNY-LLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLK 195 (368)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 195 (368)
++|++|++++|++++..+..+..+++|++|++++|. +..++... +.. +++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-f~~--------------------------l~~L~ 83 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-FYN--------------------------LSKVT 83 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT-EES--------------------------CTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH-cCC--------------------------CcCCc
Confidence 478899999998888766678888888888888886 55544321 344 44555
Q ss_pred EEEccC-CCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCcc---EEEccCC-cCCCCCCccccCCCCCC
Q 047861 196 VLNLSY-CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLV---FFDLSGN-QFQGKIPIGLGNLTFLR 270 (368)
Q Consensus 196 ~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~ 270 (368)
+|++++ |.+....+..+..+++|++|++++|.+++ .|. +..+++|+ +|++++| .+.+..+..+..+++|+
T Consensus 84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc----cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 555554 55555555555556666666666666554 221 33444444 6666666 55543344456666666
Q ss_pred -EEeCCCCcCCCCCChhccCCCCCCEEEccCCc-ccccCCcccccC-CCCCEEecCCCcCcccchhhHhhhccccccccc
Q 047861 271 -HLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNS-LQGKIPTSFVRL-CKLTSIDLSFVKLSQDLSQVLDIFSACGAYALE 347 (368)
Q Consensus 271 -~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~ 347 (368)
+|++++|.++...+..+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|.+++ +|.. .++ +|+
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~-----~L~ 229 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLE-----HLK 229 (239)
T ss_dssp EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCT-----TCS
T ss_pred eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--Hhc-----cCc
Confidence 6666666665322222322 667777777773 664445556666 677777777777664 3222 233 677
Q ss_pred EEEccCC
Q 047861 348 SLVLRSC 354 (368)
Q Consensus 348 ~L~l~~n 354 (368)
+|+++++
T Consensus 230 ~L~l~~~ 236 (239)
T 2xwt_C 230 ELIARNT 236 (239)
T ss_dssp EEECTTC
T ss_pred eeeccCc
Confidence 7777665
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=1.5e-22 Score=196.29 Aligned_cols=214 Identities=12% Similarity=0.079 Sum_probs=132.3
Q ss_pred hcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccC-----------CCC
Q 047861 136 QLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSY-----------CEL 204 (368)
Q Consensus 136 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~ 204 (368)
.+..+++|++|++++|.+........+..+++|++|++. +.+.. ..+......+++|++|++++ +.+
T Consensus 288 ~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 288 LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 334455566666665554333332334555666666655 22111 11112223456677777762 333
Q ss_pred ccCCC-CCccCCCCCCeEEccCCCCCCccccccchhcC-CCCccEEEcc----CCcCCCC-----CCccccCCCCCCEEe
Q 047861 205 HHFPP-SSSANFSSLKALDLSQNQFNNSLFQFGSWVFG-LHNLVFFDLS----GNQFQGK-----IPIGLGNLTFLRHLD 273 (368)
Q Consensus 205 ~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~l~~l~~L~~L~ 273 (368)
++... .....+++|++|++..+.+++..+. .+.. +++|+.|+++ .+.+++. ++..+..+++|++|+
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLE---SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHH---HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHH---HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 32211 1123467788888877777665444 3443 7788888886 4455532 223355688899999
Q ss_pred CCCCc--CCCCCChhcc-CCCCCCEEEccCCccccc-CCcccccCCCCCEEecCCCcCcccch-hhHhhhcccccccccE
Q 047861 274 LSDNE--FNSAIPGWLS-KLNDLEFLSLRSNSLQGK-IPTSFVRLCKLTSIDLSFVKLSQDLS-QVLDIFSACGAYALES 348 (368)
Q Consensus 274 L~~n~--l~~~~~~~l~-~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~ 348 (368)
+++|. +++..+..+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+++... .....++ +|++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~-----~L~~ 517 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP-----SLRY 517 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS-----SCCE
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC-----ccCe
Confidence 87654 6655444443 478999999999998863 45566788999999999999876544 3445566 9999
Q ss_pred EEccCCcceec
Q 047861 349 LVLRSCQFSGH 359 (368)
Q Consensus 349 L~l~~n~l~~~ 359 (368)
|++++|++++.
T Consensus 518 L~ls~n~it~~ 528 (592)
T 3ogk_B 518 LWVQGYRASMT 528 (592)
T ss_dssp EEEESCBCCTT
T ss_pred eECcCCcCCHH
Confidence 99999998865
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.1e-20 Score=155.42 Aligned_cols=177 Identities=24% Similarity=0.224 Sum_probs=116.8
Q ss_pred CCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCcc
Q 047861 167 LLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLV 246 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 246 (368)
+|++|++++|.+...+.. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~ 103 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG---VFDKLTQLK 103 (208)
T ss_dssp TCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred CCcEEEcCCCccCcCChh--hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh---HhcCccCCC
Confidence 444444444444433211 234566667777777766666666666777777777777777655444 456777777
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCc
Q 047861 247 FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVK 326 (368)
Q Consensus 247 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 326 (368)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK 176 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHh
Confidence 88887777775555556777788888888888776555567777888888888886653 45577888888888
Q ss_pred CcccchhhHhhhcccccccccEEEccCCcceeccCccc
Q 047861 327 LSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQL 364 (368)
Q Consensus 327 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (368)
++|.+|..++.++ . ++..|...|..+.++
T Consensus 177 ~~g~ip~~~~~l~-----~----~~~~C~~~~~~~~~~ 205 (208)
T 2o6s_A 177 HSGVVRNSAGSVA-----P----DSAKCSGSGKPVRSI 205 (208)
T ss_dssp CTTTBBCTTSSBC-----T----TCSBBTTTCCBGGGC
T ss_pred CCceeeccCcccc-----C----CccccccCCCcceee
Confidence 8888887776554 2 455565555555544
No 94
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=8.2e-23 Score=198.07 Aligned_cols=140 Identities=15% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCCCCCeEEccC-----------CCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccC-CCCCCEEeCC----CC
Q 047861 214 NFSSLKALDLSQ-----------NQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGN-LTFLRHLDLS----DN 277 (368)
Q Consensus 214 ~~~~L~~L~l~~-----------n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~L~----~n 277 (368)
.+++|++|++++ +.+++.... .....+++|++|++..+.+++..+..+.. +++|++|+++ .+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLI--ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHH--HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 456666666662 344432211 12345677777777666666554444444 7778888885 45
Q ss_pred cCCCC-----CChhccCCCCCCEEEccCCc--ccccCCcccc-cCCCCCEEecCCCcCcccc-hhhHhhhcccccccccE
Q 047861 278 EFNSA-----IPGWLSKLNDLEFLSLRSNS--LQGKIPTSFV-RLCKLTSIDLSFVKLSQDL-SQVLDIFSACGAYALES 348 (368)
Q Consensus 278 ~l~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~-~~~l~~~~~~~~~~L~~ 348 (368)
.+++. ++..+..+++|++|++++|. +++..+..+. .+++|+.|++++|.+++.. +..+..++ +|++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~-----~L~~ 492 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP-----NLQK 492 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT-----TCCE
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc-----ccCe
Confidence 56542 22335567888888887653 5555444444 4888999999999988743 34445555 9999
Q ss_pred EEccCCcceecc
Q 047861 349 LVLRSCQFSGHM 360 (368)
Q Consensus 349 L~l~~n~l~~~~ 360 (368)
|++++|.+++..
T Consensus 493 L~l~~n~l~~~~ 504 (592)
T 3ogk_B 493 LEMRGCCFSERA 504 (592)
T ss_dssp EEEESCCCBHHH
T ss_pred eeccCCCCcHHH
Confidence 999999987653
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4e-19 Score=169.41 Aligned_cols=189 Identities=23% Similarity=0.341 Sum_probs=122.6
Q ss_pred CCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEE
Q 047861 92 KHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHL 171 (368)
Q Consensus 92 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 171 (368)
.+|++|++++|.+++ +|..+ +++|++|++++|.++.. | ..+++|++|++++|.+..++. +.. +|++
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~---l~~--~L~~- 124 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE---LPA--SLKH- 124 (571)
T ss_dssp TTCSEEECCSSCCSC--CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC---CCT--TCCE-
T ss_pred CCccEEEeCCCCCCc--cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch---hhc--CCCE-
Confidence 378899999888874 66655 37888888888888744 4 456777888888777665443 111 4444
Q ss_pred eCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEcc
Q 047861 172 DLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLS 251 (368)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 251 (368)
|++++|.+++.+. .+++|+.|++++|.+++ +|. .+++|++|+++
T Consensus 125 -------------------------L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~------~l~~L~~L~Ls 168 (571)
T 3cvr_A 125 -------------------------LDVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE------LPTSLEVLSVR 168 (571)
T ss_dssp -------------------------EECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECC
T ss_pred -------------------------EECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC------cCCCcCEEECC
Confidence 4555554444222 34556666666666554 221 34566666666
Q ss_pred CCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCC-------CEEEccCCcccccCCcccccCCCCCEEecCC
Q 047861 252 GNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDL-------EFLSLRSNSLQGKIPTSFVRLCKLTSIDLSF 324 (368)
Q Consensus 252 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 324 (368)
+|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+|++
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCS
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeC
Confidence 666663 444 43 66777777777666 3444 332 55 88888888887 5777777788888888888
Q ss_pred CcCcccchhhHhhhc
Q 047861 325 VKLSQDLSQVLDIFS 339 (368)
Q Consensus 325 n~l~~~~~~~l~~~~ 339 (368)
|.+++.+|..+..+.
T Consensus 240 N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 240 NPLSSRIRESLSQQT 254 (571)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CcCCCcCHHHHHHhh
Confidence 888888888777764
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1.1e-19 Score=164.56 Aligned_cols=229 Identities=21% Similarity=0.194 Sum_probs=165.6
Q ss_pred cccccccCCCCCcEEECCCCCCCCCcCC-cccCCCCCCCEEeCCCCcccCCcc-hhcCCCCCCCE-EeCCCCcCCcccch
Q 047861 83 KINLSLVDFKHLIHLDLSGNDFQGIQIP-KYLGSLKNLRYLNLSRANFAGVTP-YQLGSLSNLQY-LDLSQNYLLQVESF 159 (368)
Q Consensus 83 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~~~ 159 (368)
.+|..+ .+++++|+|++|.++. +| ..+.++++|++|+|++|++.+.++ ..+.+++++++ +.+.+|.+..++..
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred ccCcCc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 456555 3689999999999984 55 468899999999999999876555 45788888876 55666777766543
Q ss_pred hhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccC-CCCccCCCCCccCCC-CCCeEEccCCCCCCccccccc
Q 047861 160 SWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSY-CELHHFPPSSSANFS-SLKALDLSQNQFNNSLFQFGS 237 (368)
Q Consensus 160 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~ 237 (368)
.+..+++|++|++++|.+...+... .....++..+++.+ +.+.......+..+. .++.|++++|+++...+
T Consensus 99 -~f~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~---- 171 (350)
T 4ay9_X 99 -AFQNLPNLQYLLISNTGIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN---- 171 (350)
T ss_dssp -SBCCCTTCCEEEEEEECCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT----
T ss_pred -hhhhccccccccccccccccCCchh--hcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh----
Confidence 3788999999999999887765432 23455677788865 466666666666554 68889999999875433
Q ss_pred hhcCCCCccEEEccCCcCCCCCC-ccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCC
Q 047861 238 WVFGLHNLVFFDLSGNQFQGKIP-IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCK 316 (368)
Q Consensus 238 ~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 316 (368)
......+|++|++.+++..+.+| ..+..+++|++|++++|+++.. |. ..+.+|+.|.+.++.-...+|. +..+++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~ 247 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PS--YGLENLKKLRARSTYNLKKLPT-LEKLVA 247 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-CS--SSCTTCCEEECTTCTTCCCCCC-TTTCCS
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-Ch--hhhccchHhhhccCCCcCcCCC-chhCcC
Confidence 33455689999998644333555 4578889999999999998754 33 2356788887777654446774 778899
Q ss_pred CCEEecCCCc
Q 047861 317 LTSIDLSFVK 326 (368)
Q Consensus 317 L~~L~l~~n~ 326 (368)
|+.+++.++.
T Consensus 248 L~~l~l~~~~ 257 (350)
T 4ay9_X 248 LMEASLTYPS 257 (350)
T ss_dssp CCEEECSCHH
T ss_pred hhhCcCCCCc
Confidence 9999987653
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=6.8e-20 Score=174.73 Aligned_cols=211 Identities=24% Similarity=0.308 Sum_probs=149.9
Q ss_pred CCCCCCCCCc-----ccccE-EecCCCCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcc
Q 047861 39 SWNIGDEDCC-----AWGGV-VCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKY 112 (368)
Q Consensus 39 ~w~~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 112 (368)
.|.. +.++| .|.|+ .|.. ++++.|++++ +.+.+ +|..+ +++|++|++++|.++ .+|
T Consensus 35 ~W~~-~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~--------n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip-- 96 (571)
T 3cvr_A 35 KWEK-QALPGENRNEAVSLLKECLI--NQFSELQLNR--------LNLSS-LPDNL--PPQITVLEITQNALI--SLP-- 96 (571)
T ss_dssp HHHT-TCCTTCCHHHHHHHHHHHHH--TTCSEEECCS--------SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC--
T ss_pred HHhc-cCCccccccchhhhcccccc--CCccEEEeCC--------CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc--
Confidence 4654 45566 79999 6753 5789999999 45665 66655 388999999999999 466
Q ss_pred cCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCC
Q 047861 113 LGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLS 192 (368)
Q Consensus 113 l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 192 (368)
..+++|++|++++|++++. |. +.. +|++|++++|.+..++. .+++|+.|++++|.+...+. .++
T Consensus 97 -~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~------~l~ 160 (571)
T 3cvr_A 97 -ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVDNNQLTMLPE-----LPALLEYINADNNQLTMLPE------LPT 160 (571)
T ss_dssp -CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCC------CCT
T ss_pred -cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECCCCcCCCCCC-----cCccccEEeCCCCccCcCCC------cCC
Confidence 4579999999999999984 65 554 99999999999887654 57888899988888876543 467
Q ss_pred CCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchh-cCCCCccEEEccCCcCCCCCCccccCCCCCCE
Q 047861 193 SLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWV-FGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRH 271 (368)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 271 (368)
+|+.|++++|.+.+.+. +. ++|+.|++++|.++. +|.+...+ ...+.|+.|++++|.++ .+|..+..+++|+.
T Consensus 161 ~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS-CCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEE
T ss_pred CcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc-hhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCE
Confidence 88888888888777443 44 778888888887773 33221100 11122277777777776 56666666777777
Q ss_pred EeCCCCcCCCCCChhccC
Q 047861 272 LDLSDNEFNSAIPGWLSK 289 (368)
Q Consensus 272 L~L~~n~l~~~~~~~l~~ 289 (368)
|++++|.+++.+|..+..
T Consensus 235 L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 235 IILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EECCSSSCCHHHHHHHHH
T ss_pred EEeeCCcCCCcCHHHHHH
Confidence 777777776665555543
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=1.4e-21 Score=189.45 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=107.2
Q ss_pred CCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCC-CCCccCCCCCCeEEc-------------------
Q 047861 164 GLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFP-PSSSANFSSLKALDL------------------- 223 (368)
Q Consensus 164 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l------------------- 223 (368)
.+++|++|++++|.+... .....+..+++|++|++++| +.... ......+++|++|++
T Consensus 287 ~~~~L~~L~L~~~~l~~~-~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l 364 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSY-DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364 (594)
T ss_dssp HHTTCCEEECTTCCCCHH-HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred hhCCCCEEEccCCCCCHH-HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence 567888888888874432 22333456777777777766 22111 111112344444444
Q ss_pred ---------------cCCCCCCccccccchh-cCCCCccEEEcc--C----CcCCCC-----CCccccCCCCCCEEeCCC
Q 047861 224 ---------------SQNQFNNSLFQFGSWV-FGLHNLVFFDLS--G----NQFQGK-----IPIGLGNLTFLRHLDLSD 276 (368)
Q Consensus 224 ---------------~~n~l~~~~~~~~~~~-~~~~~L~~L~l~--~----n~l~~~-----~~~~l~~l~~L~~L~L~~ 276 (368)
..+.+++.... .+ ..+++|+.|+++ + +.+++. ++..+..+++|++|++++
T Consensus 365 ~~l~~~~~~L~~L~~~~~~l~~~~~~---~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 365 VSVSMGCPKLESVLYFCRQMTNAALI---TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHCTTCCEEEEEESCCCHHHHH---HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHhchhHHHHHHhcCCcCHHHHH---HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 44444432222 22 246677777777 2 333311 111244567777777766
Q ss_pred CcCCCCCChhccC-CCCCCEEEccCCcccccCCccc-ccCCCCCEEecCCCcCcccchh-hHhhhcccccccccEEEccC
Q 047861 277 NEFNSAIPGWLSK-LNDLEFLSLRSNSLQGKIPTSF-VRLCKLTSIDLSFVKLSQDLSQ-VLDIFSACGAYALESLVLRS 353 (368)
Q Consensus 277 n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~-~l~~~~~~~~~~L~~L~l~~ 353 (368)
.+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....++ +|++|++++
T Consensus 442 -~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~L~l~~ 515 (594)
T 2p1m_B 442 -LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-----TMRSLWMSS 515 (594)
T ss_dssp -SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-----GSSEEEEES
T ss_pred -cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-----CCCEEeeeC
Confidence 555544444544 7788888888888765544444 5688888888888888655444 233355 888888888
Q ss_pred Cccee
Q 047861 354 CQFSG 358 (368)
Q Consensus 354 n~l~~ 358 (368)
|+++.
T Consensus 516 ~~~~~ 520 (594)
T 2p1m_B 516 CSVSF 520 (594)
T ss_dssp SCCBH
T ss_pred CCCCH
Confidence 88754
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=3.1e-19 Score=171.93 Aligned_cols=172 Identities=24% Similarity=0.336 Sum_probs=90.1
Q ss_pred cCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCC
Q 047861 89 VDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLL 168 (368)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 168 (368)
..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|+.|+|++|.+...+ .+..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS---SLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT---TSTTCTTC
T ss_pred hcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh---hhccCCCC
Confidence 345556666666665552 22 35555666666666665555433 555555555555555544432 13444444
Q ss_pred CEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEE
Q 047861 169 EHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFF 248 (368)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 248 (368)
++ |++++|.+.+. ..+..+++|+.|+|++|.+++. . .+..+++|+.|
T Consensus 112 ~~--------------------------L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~---~l~~l~~L~~L 158 (605)
T 1m9s_A 112 KS--------------------------LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--T---VLSRLTKLDTL 158 (605)
T ss_dssp CE--------------------------EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--G---GGGSCTTCSEE
T ss_pred CE--------------------------EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--h---hhcccCCCCEE
Confidence 44 44444444432 2244455555555555555432 1 34555556666
Q ss_pred EccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccc
Q 047861 249 DLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQG 305 (368)
Q Consensus 249 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 305 (368)
+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 159 ~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 159 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 666665554333 55556666666666655542 235555666666666665553
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=6e-19 Score=155.35 Aligned_cols=191 Identities=21% Similarity=0.249 Sum_probs=150.0
Q ss_pred CEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEc
Q 047861 120 RYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNL 199 (368)
Q Consensus 120 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 199 (368)
..+.+....+++.. ....+++|++|++++|.+...+. +..+++|++|++++|.+...+. +..+++|+.|++
T Consensus 27 ~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l 97 (291)
T 1h6t_A 27 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFL 97 (291)
T ss_dssp HHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEEC
T ss_pred HHHHhcCCCccccc--chhhcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcc----cccCCCCCEEEC
Confidence 34455566655542 23467899999999998877653 6788999999999999887753 578899999999
Q ss_pred cCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcC
Q 047861 200 SYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEF 279 (368)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 279 (368)
++|.+.+.. .+..+++|++|++++|.+++. . .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+
T Consensus 98 ~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~--~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 98 DENKVKDLS--SLKDLKKLKSLSLEHNGISDI--N---GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CSSCCCCGG--GGTTCTTCCEEECTTSCCCCC--G---GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CCCcCCCCh--hhccCCCCCEEECCCCcCCCC--h---hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 999887743 377888999999999988763 2 567888999999999988754 5677889999999999988
Q ss_pred CCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccch
Q 047861 280 NSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 280 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++....
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 76544 7888999999999998874 44 47888899999999998876443
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=1.1e-18 Score=158.03 Aligned_cols=235 Identities=20% Similarity=0.200 Sum_probs=174.2
Q ss_pred cccccEEecCC---------CCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCC-cccCCCC
Q 047861 48 CAWGGVVCNNF---------TGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIP-KYLGSLK 117 (368)
Q Consensus 48 c~w~gv~c~~~---------~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~ 117 (368)
|.|+.|.|... ...++.|+|++ +.+....+.+|.++++|++|+|++|.+.+. ++ ..+.+++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~--------N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~ 79 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL--------TKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLP 79 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEES--------CCCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccC--------CcCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcch
Confidence 67888889532 13688999998 466655556799999999999999998654 44 4578888
Q ss_pred CCCE-EeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCC-CCCCCCchhhhhcCC-CCCC
Q 047861 118 NLRY-LNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQ-ADLSKATDWLLVTNS-LSSL 194 (368)
Q Consensus 118 ~L~~-L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~-~~~L 194 (368)
++++ +.+..|+++...|..+..+++|++|++++|.+...+... +....++..+++.+ +.+...+.. .+.. ...+
T Consensus 80 ~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~--~f~~~~~~l 156 (350)
T 4ay9_X 80 KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERN--SFVGLSFES 156 (350)
T ss_dssp TCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTT--SSTTSBSSC
T ss_pred hhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh-hcccchhhhhhhcccccccccccc--chhhcchhh
Confidence 8876 556678999888888999999999999999988776544 44556677888865 445444321 1223 3468
Q ss_pred CEEEccCCCCccCCCCCccCCCCCCeEEccC-CCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEe
Q 047861 195 KVLNLSYCELHHFPPSSSANFSSLKALDLSQ-NQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273 (368)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 273 (368)
+.|++++|.++...+..+. ..+|+++++.+ |.++...+. .+.++++|++|++++|.++ .+|.. .+.+|+.|.
T Consensus 157 ~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~---~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~ 229 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPND---VFHGASGPVILDISRTRIH-SLPSY--GLENLKKLR 229 (350)
T ss_dssp EEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTT---TTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEE
T ss_pred hhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHH---HhccCcccchhhcCCCCcC-ccChh--hhccchHhh
Confidence 8999999999887766554 56899999975 556544444 5788999999999999998 55542 356778887
Q ss_pred CCCCcCCCCCChhccCCCCCCEEEccCCc
Q 047861 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNS 302 (368)
Q Consensus 274 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 302 (368)
+.++.--..+| .+..+++|+.+++.++.
T Consensus 230 ~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 230 ARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 77665444566 47889999999998753
No 102
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=6.9e-22 Score=191.62 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=63.3
Q ss_pred CcEEEEecCCCCCCCCCCCccccccccccc-CCCCCcEEECCCC-CCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhc
Q 047861 60 GHVLQLNLGNPNPNNGTGSKLVGKINLSLV-DFKHLIHLDLSGN-DFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQL 137 (368)
Q Consensus 60 ~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 137 (368)
.+++.++|++ +.+.+..+..+. .+++|++|++++| .++...++..+.++++|++|++++|.+++..+..+
T Consensus 105 ~~L~~L~L~~--------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 105 TWLEEIRLKR--------MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp TTCCEEEEES--------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred CCCCeEEeeC--------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 3567777777 345555555554 5777777777776 44432234444567777777777777665443333
Q ss_pred ----CCCCCCCEEeCCCCc--CCcccchhhhcCCCCCCEEeCCCC
Q 047861 138 ----GSLSNLQYLDLSQNY--LLQVESFSWLSGLSLLEHLDLSQA 176 (368)
Q Consensus 138 ----~~l~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~ 176 (368)
..+++|++|++++|. +...........+++|++|++++|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 256677777777775 211111122344567777777665
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=9e-19 Score=154.22 Aligned_cols=171 Identities=26% Similarity=0.368 Sum_probs=95.1
Q ss_pred cCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCC
Q 047861 89 VDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLL 168 (368)
Q Consensus 89 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 168 (368)
..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+...+. +..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS---LKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG---GTTCTTC
T ss_pred hhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh---hccCCCC
Confidence 456677777777777663 32 36667777777777777766533 6667777777777776555432 4555555
Q ss_pred CEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEE
Q 047861 169 EHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFF 248 (368)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 248 (368)
++|++++|.+...+ .+..+++|+.|++++|.+++. . .+..+++|+.|
T Consensus 115 ~~L~L~~n~i~~~~----------------------------~l~~l~~L~~L~l~~n~l~~~--~---~l~~l~~L~~L 161 (291)
T 1h6t_A 115 KSLSLEHNGISDIN----------------------------GLVHLPQLESLYLGNNKITDI--T---VLSRLTKLDTL 161 (291)
T ss_dssp CEEECTTSCCCCCG----------------------------GGGGCTTCCEEECCSSCCCCC--G---GGGGCTTCSEE
T ss_pred CEEECCCCcCCCCh----------------------------hhcCCCCCCEEEccCCcCCcc--h---hhccCCCCCEE
Confidence 55555555554432 233444455555555544432 1 34455555555
Q ss_pred EccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc
Q 047861 249 DLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 249 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++
T Consensus 162 ~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 162 SLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 555555543222 4455555555555555543 22 2455555555555555554
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=4.6e-18 Score=144.29 Aligned_cols=160 Identities=23% Similarity=0.254 Sum_probs=122.2
Q ss_pred CCCCcccccEEecCCCCcEEEEecCCCCCCCCCCCcccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEe
Q 047861 44 DEDCCAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLN 123 (368)
Q Consensus 44 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 123 (368)
+...|.|.++.|... -...+|..+. ++|++|++++|.+++. .+..+..+++|++|+
T Consensus 15 ~~~~Cs~~~v~c~~~---------------------~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ 70 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK---------------------RHASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELY 70 (229)
T ss_dssp TTCEEETTEEECTTS---------------------CCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCEEeCCEeEccCC---------------------CcCccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEE
Confidence 678899999999641 1123333332 7899999999999976 678889999999999
Q ss_pred CCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCC
Q 047861 124 LSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCE 203 (368)
Q Consensus 124 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 203 (368)
+++|++....+..+..+++|++|++++|.+...+.. .+..+++|++|++++|.+...+. .+..+++|+.|++++|.
T Consensus 71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~ 146 (229)
T 3e6j_A 71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA-VFDRLVHLKELFMCCNKLTELPR---GIERLTHLTHLALDQNQ 146 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCSCCT---TGGGCTTCSEEECCSSC
T ss_pred CCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh-HhCcchhhCeEeccCCcccccCc---ccccCCCCCEEECCCCc
Confidence 999999887667778899999999999988766543 25778888888888888775543 34567777788887777
Q ss_pred CccCCCCCccCCCCCCeEEccCCCCCCc
Q 047861 204 LHHFPPSSSANFSSLKALDLSQNQFNNS 231 (368)
Q Consensus 204 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 231 (368)
+....+..+..+++|+.|++++|.++..
T Consensus 147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 147 LKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 7777666677777777777777777644
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1e-18 Score=168.28 Aligned_cols=193 Identities=21% Similarity=0.251 Sum_probs=161.5
Q ss_pred CCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEE
Q 047861 118 NLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVL 197 (368)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 197 (368)
.+..+.+..+.+....+ +..+++|+.|++++|.+...+. +..+++|+.|++++|.+...+. +..+++|+.|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~---l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTT---GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEE
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChH---HccCCCCCEEEeeCCCCCCChh----hccCCCCCEE
Confidence 34456666676665533 4578999999999999877753 7889999999999999988754 5689999999
Q ss_pred EccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCC
Q 047861 198 NLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDN 277 (368)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 277 (368)
++++|.+.+.. .+..+++|+.|+|++|.+++. . .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|
T Consensus 93 ~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~---~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 93 FLDENKIKDLS--SLKDLKKLKSLSLEHNGISDI--N---GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp ECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCC--G---GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred ECcCCCCCCCh--hhccCCCCCEEEecCCCCCCC--c---cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence 99999998753 678899999999999999863 2 578899999999999999854 56889999999999999
Q ss_pred cCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccch
Q 047861 278 EFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 278 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
.+++..| +..+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+.+...
T Consensus 164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 164 QISDIVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECCCC
T ss_pred cCCCchh--hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCCcc
Confidence 9987655 8899999999999999985 3 468899999999999999987543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=2.4e-18 Score=156.34 Aligned_cols=177 Identities=25% Similarity=0.193 Sum_probs=102.3
Q ss_pred CEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcC-CCCCCCEEEccCCCCccCCCCCccCCCCCCeEE
Q 047861 144 QYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTN-SLSSLKVLNLSYCELHHFPPSSSANFSSLKALD 222 (368)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 222 (368)
+.++++++.+..++.. -.+.++.|++++|.+...+.. .+. .+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 21 ~~l~c~~~~l~~iP~~----~~~~l~~L~Ls~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS----LPSYTALLDLSHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSCCSS----CCTTCSEEECCSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCccCcc----CCCCCCEEECCCCCCCccChh--hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 5677777776665531 224466667766666554321 122 566666666666666666666666666666666
Q ss_pred ccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhc---cCCCCCCEEEcc
Q 047861 223 LSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWL---SKLNDLEFLSLR 299 (368)
Q Consensus 223 l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~ 299 (368)
|++|.++...+. .+..+++|++|++++|.+.+..+..+..+++|++|+|++|.+++..+..+ ..+++|+.|+|+
T Consensus 95 Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 95 LSSNHLHTLDEF---LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCCcCCcCCHH---HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 666666544443 45566666666666666665445556666666666666666654333333 345666666666
Q ss_pred CCcccccCCcccccCCC--CCEEecCCCcCcc
Q 047861 300 SNSLQGKIPTSFVRLCK--LTSIDLSFVKLSQ 329 (368)
Q Consensus 300 ~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~ 329 (368)
+|++++..+..+..++. ++.|++++|.+..
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 66666433344555554 3566666666553
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=3.6e-18 Score=144.01 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=134.0
Q ss_pred CCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCC-CCccCCCCCCeEEccCCCCCCccccccchhcCCCCcc
Q 047861 168 LEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPP-SSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLV 246 (368)
Q Consensus 168 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 246 (368)
-++++++++.+...+. ...+.+++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+. .+.++++|+
T Consensus 13 ~~~l~~s~n~l~~iP~-----~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~ 84 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-----HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVN 84 (220)
T ss_dssp TTEEECCSSCCSSCCS-----CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---TTTTCTTCC
T ss_pred CCEeEeCCCCcccCcc-----CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---HhCCCCCCC
Confidence 3588999998877654 224567899999999988854 5578899999999999999876665 688899999
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCc
Q 047861 247 FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVK 326 (368)
Q Consensus 247 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 326 (368)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.
T Consensus 85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999999987777778899999999999999998888889999999999999999998778899999999999999999
Q ss_pred Ccccch
Q 047861 327 LSQDLS 332 (368)
Q Consensus 327 l~~~~~ 332 (368)
+....+
T Consensus 165 l~c~c~ 170 (220)
T 2v70_A 165 FNCNCY 170 (220)
T ss_dssp EECSGG
T ss_pred CcCCCc
Confidence 887544
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=5.8e-18 Score=142.73 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=128.3
Q ss_pred CEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEc
Q 047861 144 QYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDL 223 (368)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 223 (368)
+.++++++.+..++. .-.+.+++|++++|.+...+.. ..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~l~~s~n~l~~iP~----~~~~~~~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE----HIPQYTAELRLNNNEFTVLEAT-GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECCC-CCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcccCcc----CCCCCCCEEEcCCCcCCccCch-hhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 588999988877663 2245678999999988766211 13467889999999999999888888889999999999
Q ss_pred cCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcc
Q 047861 224 SQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303 (368)
Q Consensus 224 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 303 (368)
++|.+++..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+
T Consensus 89 s~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 89 TSNRLENVQHK---MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CSSCCCCCCGG---GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCccCccCHh---HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 99999877666 678899999999999999877788888899999999999999888788888999999999999988
Q ss_pred ccc
Q 047861 304 QGK 306 (368)
Q Consensus 304 ~~~ 306 (368)
...
T Consensus 166 ~c~ 168 (220)
T 2v70_A 166 NCN 168 (220)
T ss_dssp ECS
T ss_pred cCC
Confidence 744
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1.3e-18 Score=144.28 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=118.3
Q ss_pred CCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCC
Q 047861 190 SLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFL 269 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 269 (368)
.+++|+.|++++|.+.... .+..+++|++|++++|.++.. . .+..+++|++|++++|.+.+..+..+..+++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--N---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--G---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--h---hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 4567778888887777443 467778888888888866432 2 56778889999999988886677788888999
Q ss_pred CEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEE
Q 047861 270 RHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESL 349 (368)
Q Consensus 270 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L 349 (368)
++|++++|.+++..+..+..+++|++|++++|...+.++ .+..+++|+.|++++|.+++ ++ .+..++ +|++|
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~-----~L~~L 186 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFP-----KLNQL 186 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCS-----SCCEE
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCC-----CCCEE
Confidence 999999999887778888889999999999997333555 68888999999999999886 33 556666 89999
Q ss_pred EccCCccee
Q 047861 350 VLRSCQFSG 358 (368)
Q Consensus 350 ~l~~n~l~~ 358 (368)
++++|++.+
T Consensus 187 ~l~~N~i~~ 195 (197)
T 4ezg_A 187 YAFSQTIGG 195 (197)
T ss_dssp EECBC----
T ss_pred EeeCcccCC
Confidence 999998865
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4.1e-18 Score=143.71 Aligned_cols=154 Identities=23% Similarity=0.270 Sum_probs=134.2
Q ss_pred CEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEE
Q 047861 169 EHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFF 248 (368)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 248 (368)
+.++++++.+...+. ...++++.|++++|.+.+..+..+..+++|+.|++++|.+++..+. .+.++++|++|
T Consensus 14 ~~v~c~~~~l~~iP~-----~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-----NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD---AFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSCCS-----SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT---TTTTCSSCCEE
T ss_pred CEEEcCCCCcCcCCC-----ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH---HhhCCcCCCEE
Confidence 678888888877754 1236899999999999998888899999999999999999877666 78899999999
Q ss_pred EccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCc
Q 047861 249 DLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLS 328 (368)
Q Consensus 249 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 328 (368)
++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 99999998555566788999999999999999888888999999999999999999777778889999999999999987
Q ss_pred cc
Q 047861 329 QD 330 (368)
Q Consensus 329 ~~ 330 (368)
.+
T Consensus 166 c~ 167 (220)
T 2v9t_B 166 CD 167 (220)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.2e-17 Score=140.80 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=130.0
Q ss_pred CEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEc
Q 047861 144 QYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDL 223 (368)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 223 (368)
+.++++++.+..++.. -.+++++|++++|.+...+. ..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~v~c~~~~l~~iP~~----l~~~l~~L~l~~n~i~~i~~--~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN----LPETITEIRLEQNTIKVIPP--GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCSSCCSS----CCTTCCEEECCSSCCCEECT--TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcCcCCCc----cCcCCCEEECCCCcCCCcCH--hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEEC
Confidence 5788888888777642 23789999999999877643 24567899999999999999998889999999999999
Q ss_pred cCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcc
Q 047861 224 SQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303 (368)
Q Consensus 224 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 303 (368)
++|.++...+. .+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 88 s~N~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 88 YGNKITELPKS---LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCcCCccCHh---HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99999865555 578899999999999999987788899999999999999999887777788899999999999987
Q ss_pred c
Q 047861 304 Q 304 (368)
Q Consensus 304 ~ 304 (368)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 6
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.1e-17 Score=141.88 Aligned_cols=157 Identities=21% Similarity=0.210 Sum_probs=134.2
Q ss_pred CCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCcc
Q 047861 167 LLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLV 246 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~ 246 (368)
.-+.++.+++.+...+. ...++|+.|++++|.+.+..+..+..+++|++|++++|.++...+. .+..+++|+
T Consensus 20 s~~~v~c~~~~l~~ip~-----~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~---~~~~l~~L~ 91 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPA-----GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG---VFDSLTQLT 91 (229)
T ss_dssp ETTEEECTTSCCSSCCS-----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred eCCEeEccCCCcCccCC-----CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh---hcccCCCcC
Confidence 46778888888877754 2348899999999999999888899999999999999999765555 678899999
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCc
Q 047861 247 FFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVK 326 (368)
Q Consensus 247 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 326 (368)
+|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 9999999998666667788999999999999998 578888899999999999999986666778899999999999999
Q ss_pred Ccccch
Q 047861 327 LSQDLS 332 (368)
Q Consensus 327 l~~~~~ 332 (368)
+....+
T Consensus 171 ~~c~c~ 176 (229)
T 3e6j_A 171 WDCECR 176 (229)
T ss_dssp BCTTBG
T ss_pred ccCCcc
Confidence 987543
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.3e-19 Score=178.77 Aligned_cols=229 Identities=19% Similarity=0.144 Sum_probs=84.2
Q ss_pred ccCHHHHHHHHHHHhhC-CCCCCCCCCCCCCCCCCcccccEEecCCCCcEEEEecCCCCCCCCCCCcccccccccccCCC
Q 047861 14 GCIDSEREALLELKQDL-KDPSSRLASWNIGDEDCCAWGGVVCNNFTGHVLQLNLGNPNPNNGTGSKLVGKINLSLVDFK 92 (368)
Q Consensus 14 ~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (368)
...+.+++++++++.+. ...+.....|.........|.+..+.. .+++.++|.++ .+.. .+. .
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n--------~~~~-~~~-----~ 191 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFAN--------GKDE-ANQ-----A 191 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCC--------CCCc-chh-----h
Confidence 45578899999999887 333344556765455667898887754 67888888773 3333 222 2
Q ss_pred CCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEe
Q 047861 93 HLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLD 172 (368)
Q Consensus 93 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 172 (368)
.++.++|+.+.+... ++..+.+. ..+..+..++.|+.|+|++|.+..++.. +..+++|++|+
T Consensus 192 ~l~~l~Ls~~~i~~~---------------~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~--~~~l~~L~~L~ 253 (727)
T 4b8c_D 192 LLQHKKLSQYSIDED---------------DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISAN--IFKYDFLTRLY 253 (727)
T ss_dssp ----------------------------------------------CCCCCCEEECTTSCCSCCCGG--GGGCCSCSCCB
T ss_pred HhhcCccCcccccCc---------------ccccccee-cChhhhccCCCCcEEECCCCCCCCCChh--hcCCCCCCEEE
Confidence 244455555544322 22223322 2244555566666666666655544322 22445555555
Q ss_pred CCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccC
Q 047861 173 LSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSG 252 (368)
Q Consensus 173 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 252 (368)
+++|.+...+. .+..+++|+.|++++|.++ ..|..+..+++|++|+|++|.++ .+|. .+..+++|+.|+|++
T Consensus 254 Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~---~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 254 LNGNSLTELPA---EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPW---EFGNLCNLQFLGVEG 325 (727)
T ss_dssp CTTSCCSCCCG---GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCS---STTSCTTCCCEECTT
T ss_pred eeCCcCcccCh---hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccCh---hhhcCCCccEEeCCC
Confidence 55555443322 3345566666666666665 33455556666666666666554 3333 455556666666666
Q ss_pred CcCCCCCCccccCCC-CCCEEeCCCCcCCCCCC
Q 047861 253 NQFQGKIPIGLGNLT-FLRHLDLSDNEFNSAIP 284 (368)
Q Consensus 253 n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~ 284 (368)
|.+.+.+|..+..+. .+..+++++|.+++.+|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 666555544443221 11224555555555444
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=9.6e-18 Score=138.96 Aligned_cols=109 Identities=21% Similarity=0.210 Sum_probs=51.4
Q ss_pred CCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCC
Q 047861 189 NSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF 268 (368)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 268 (368)
..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+.++ .+..+++
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~---~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~ 160 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT---KINTLPKVNSIDLSYNGAITDIM-PLKTLPE 160 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH---HHTTCSSCCEEECCSCTBCCCCG-GGGGCSS
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH---HHhhCCCCCEEEccCCCCccccH-hhcCCCC
Confidence 3455555555555555554444455555555555555555543333 44455555555555554111333 3444444
Q ss_pred CCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcc
Q 047861 269 LRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303 (368)
Q Consensus 269 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 303 (368)
|++|++++|.+++. + .+..+++|++|++++|++
T Consensus 161 L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 161 LKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred CCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 45555444444431 1 333444444444444443
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.9e-17 Score=150.43 Aligned_cols=176 Identities=27% Similarity=0.200 Sum_probs=139.6
Q ss_pred CEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhc-CCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEE
Q 047861 120 RYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLS-GLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLN 198 (368)
Q Consensus 120 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 198 (368)
+.+++++++++.. |..+. +.++.|++++|.+...+... +. .+++|++|++++|.+...+.. .+..+++|++|+
T Consensus 21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~-~~~~l~~L~~L~L~~N~i~~i~~~--~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEW-TPTRLTNLHSLLLSHNHLNFISSE--AFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTS-SSSCCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEE
T ss_pred CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhh-hhhcccccCEEECCCCcCCccChh--hccCCCCCCEEE
Confidence 6788988888775 55443 56889999999987776544 44 889999999999988776432 456889999999
Q ss_pred ccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccc---cCCCCCCEEeCC
Q 047861 199 LSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGL---GNLTFLRHLDLS 275 (368)
Q Consensus 199 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~ 275 (368)
+++|.+....+..+..+++|+.|+|++|.++...+. .+.++++|+.|++++|.+.+..+..+ ..+++|+.|+|+
T Consensus 95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHH---HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence 999999988888888899999999999999876666 78889999999999999984333334 568899999999
Q ss_pred CCcCCCCCChhccCCCC--CCEEEccCCccc
Q 047861 276 DNEFNSAIPGWLSKLND--LEFLSLRSNSLQ 304 (368)
Q Consensus 276 ~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~ 304 (368)
+|.++...+..+..++. ++.|++++|.+.
T Consensus 172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99998765567777776 488999999876
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=7.6e-21 Score=182.03 Aligned_cols=205 Identities=22% Similarity=0.232 Sum_probs=135.5
Q ss_pred CCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcC------------CcccchhhhcCCCCCCEEe-CCCCCCCC
Q 047861 114 GSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYL------------LQVESFSWLSGLSLLEHLD-LSQADLSK 180 (368)
Q Consensus 114 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 180 (368)
..+++|+.|+|++|++.. +|..++.+++|+.|++++|.. .....+..+..+++|+.|+ +..+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 456777777777777763 477777777777777765531 0001112244455555554 322211
Q ss_pred CchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCC
Q 047861 181 ATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIP 260 (368)
Q Consensus 181 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 260 (368)
.+|+.+.+.+|.+....+ ..|+.|++++|.+++ +| .+..+++|+.|++++|.++ .+|
T Consensus 423 -----------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp----~~~~l~~L~~L~Ls~N~l~-~lp 479 (567)
T 1dce_A 423 -----------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LC----HLEQLLLVTHLDLSHNRLR-ALP 479 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CC----CGGGGTTCCEEECCSSCCC-CCC
T ss_pred -----------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-Cc----CccccccCcEeecCccccc-ccc
Confidence 123333344444333221 247788888888775 23 2667788888888888887 778
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccC-CcccccCCCCCEEecCCCcCcccchh---hHh
Q 047861 261 IGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI-PTSFVRLCKLTSIDLSFVKLSQDLSQ---VLD 336 (368)
Q Consensus 261 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~---~l~ 336 (368)
..+..+++|+.|++++|.+++ +| .++.+++|+.|++++|.+++.. |..+..+++|+.|+|++|.+++..+. .+.
T Consensus 480 ~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 480 PALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred hhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 888888888888888888876 55 7788888888888888888665 88888888888888888888875442 233
Q ss_pred hhcccccccccEEEc
Q 047861 337 IFSACGAYALESLVL 351 (368)
Q Consensus 337 ~~~~~~~~~L~~L~l 351 (368)
.++ +|+.|++
T Consensus 558 ~lp-----~L~~L~l 567 (567)
T 1dce_A 558 MLP-----SVSSILT 567 (567)
T ss_dssp HCT-----TCSEEEC
T ss_pred HCc-----ccCccCC
Confidence 355 8888864
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.1e-17 Score=145.06 Aligned_cols=173 Identities=23% Similarity=0.288 Sum_probs=138.5
Q ss_pred CCCCCCEEeCCCCcCCcccchhhhcCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCC
Q 047861 139 SLSNLQYLDLSQNYLLQVESFSWLSGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSL 218 (368)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 218 (368)
.+.+++.++++++.+...+. +..+++|++|++++|.+...+ .+..+++|++|++++|.+.+..+ +..+++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~---~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L 87 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP--LKDLTKL 87 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC---HHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred HHHHHHHHHhcCCCcccccc---hhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence 34566777888888776653 678899999999999887765 34578999999999999888765 7888999
Q ss_pred CeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEc
Q 047861 219 KALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSL 298 (368)
Q Consensus 219 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 298 (368)
+.|++++|++++.. . +.. ++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+++. + .+..+++|++|++
T Consensus 88 ~~L~L~~N~l~~l~-~----~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 88 EELSVNRNRLKNLN-G----IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp CEEECCSSCCSCCT-T----CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred CEEECCCCccCCcC-c----ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 99999999987633 2 222 789999999998874 33 578889999999999998764 3 6788899999999
Q ss_pred cCCcccccCCcccccCCCCCEEecCCCcCcccch
Q 047861 299 RSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 299 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
++|++++. ..+..+++|+.|++++|.+++...
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 99998865 667888999999999998887543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=6.6e-17 Score=130.32 Aligned_cols=138 Identities=21% Similarity=0.212 Sum_probs=100.1
Q ss_pred CCCCeEEccCCCCC-CccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCC
Q 047861 216 SSLKALDLSQNQFN-NSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLE 294 (368)
Q Consensus 216 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 294 (368)
++|++|++++|.++ +.++. .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~---~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG---LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS---CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred ccCCEEECCCCCCChhhHHH---HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 56777777777765 44444 456667777777777777644 5667777888888888888776677766788888
Q ss_pred EEEccCCccccc-CCcccccCCCCCEEecCCCcCcccch---hhHhhhcccccccccEEEccCCcceeccCccc
Q 047861 295 FLSLRSNSLQGK-IPTSFVRLCKLTSIDLSFVKLSQDLS---QVLDIFSACGAYALESLVLRSCQFSGHMTNQL 364 (368)
Q Consensus 295 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (368)
+|++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..++ +|++|++++|.+. ++|++.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-----~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-----QLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-----SCCEETTEETTSC-BCCSSS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-----cCcEecCCCCChh-hccccc
Confidence 888888887743 22677788888888888888886554 4566666 8888888888877 577654
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=4.8e-17 Score=140.94 Aligned_cols=170 Identities=22% Similarity=0.302 Sum_probs=107.4
Q ss_pred CCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCCCCC
Q 047861 90 DFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLSLLE 169 (368)
Q Consensus 90 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 169 (368)
.+.+++.++++++.+++. + .+..+++|++|++++|.++.. + .+..+++|++|++++|.+...+. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~--~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL--V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE--E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcccc--c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh---hccCCCCC
Confidence 456677777888877743 3 466788888888888887765 3 56778888888888887776654 66777777
Q ss_pred EEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEE
Q 047861 170 HLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFD 249 (368)
Q Consensus 170 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~ 249 (368)
+|++++|.+...+.. .. ++|+.|++++|.+.+.. .+..+++|+.|++++|++++. + .+..+++|+.|+
T Consensus 89 ~L~L~~N~l~~l~~~----~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~-~----~l~~l~~L~~L~ 156 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGI----PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI-V----MLGFLSKLEVLD 156 (263)
T ss_dssp EEECCSSCCSCCTTC----CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC-G----GGGGCTTCCEEE
T ss_pred EEECCCCccCCcCcc----cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC-h----HHccCCCCCEEE
Confidence 777777776665431 12 56666666666665532 355556666666666665543 1 344555666666
Q ss_pred ccCCcCCCCCCccccCCCCCCEEeCCCCcCCC
Q 047861 250 LSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNS 281 (368)
Q Consensus 250 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 281 (368)
+++|.+.+. ..+..+++|+.|++++|.++.
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 666655533 345555555666665555543
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.9e-16 Score=129.39 Aligned_cols=133 Identities=22% Similarity=0.255 Sum_probs=89.0
Q ss_pred CEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeC
Q 047861 195 KVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDL 274 (368)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 274 (368)
+.++++++.+...+. .+ ..++++|++++|.+++..+.. .+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDG--LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSC--SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCcc--ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 455666665544332 22 136677777777666544320 2566777777777777777666667777777777777
Q ss_pred CCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccch
Q 047861 275 SDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 275 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7777777666667777777777777777777667777777777777777777776543
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=2e-17 Score=163.17 Aligned_cols=150 Identities=25% Similarity=0.314 Sum_probs=108.6
Q ss_pred CCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChh
Q 047861 207 FPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGW 286 (368)
Q Consensus 207 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 286 (368)
..+..+..++.|+.|+|++|.+. .++. .+.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~---~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~ 288 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISA---NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE 288 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCG---GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCCh---hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence 34556677788888888888877 3333 4557888888888888887 77877888888888888888887 57888
Q ss_pred ccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccCccccC
Q 047861 287 LSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMTNQLGQ 366 (368)
Q Consensus 287 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (368)
++.+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..... .+..+++++|.++|.+|..+..
T Consensus 289 ~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----~~~~l~l~~N~l~~~~p~~l~~ 363 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV----TGLIFYLRDNRPEIPLPHERRF 363 (727)
T ss_dssp GGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHH----HHHHHHHHHCCCCCCCCCC---
T ss_pred hcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcch----hhhHHhhccCcccCcCccccce
Confidence 888888888888888886 77877888888888888888888888877665430 2234677788888888877654
Q ss_pred C
Q 047861 367 F 367 (368)
Q Consensus 367 ~ 367 (368)
+
T Consensus 364 l 364 (727)
T 4b8c_D 364 I 364 (727)
T ss_dssp -
T ss_pred e
Confidence 4
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=2e-16 Score=124.79 Aligned_cols=128 Identities=23% Similarity=0.252 Sum_probs=86.9
Q ss_pred CCCCeEEccCCCCC-CccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCC
Q 047861 216 SSLKALDLSQNQFN-NSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLE 294 (368)
Q Consensus 216 ~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 294 (368)
++|+.|++++|.++ +..+. .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG---LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS---CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHH---HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 45666666666665 34444 455666677777777766643 5566677777777777777766666666677778
Q ss_pred EEEccCCccccc-CCcccccCCCCCEEecCCCcCcccch---hhHhhhcccccccccEEEccC
Q 047861 295 FLSLRSNSLQGK-IPTSFVRLCKLTSIDLSFVKLSQDLS---QVLDIFSACGAYALESLVLRS 353 (368)
Q Consensus 295 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~~~~~~L~~L~l~~ 353 (368)
+|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..++ +|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-----~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-----QLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-----TCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-----CcccccCCC
Confidence 888877777742 34667777888888888888776554 4566666 788887764
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.3e-19 Score=171.73 Aligned_cols=106 Identities=26% Similarity=0.322 Sum_probs=64.8
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecC
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLS 323 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 323 (368)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .+..+++|+.|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35666666666653 444 556666666666666665 455566666666666666666663 44 56666666666666
Q ss_pred CCcCcccc-hhhHhhhcccccccccEEEccCCcceec
Q 047861 324 FVKLSQDL-SQVLDIFSACGAYALESLVLRSCQFSGH 359 (368)
Q Consensus 324 ~n~l~~~~-~~~l~~~~~~~~~~L~~L~l~~n~l~~~ 359 (368)
+|.+++.. |..+..++ +|++|+|++|++++.
T Consensus 517 ~N~l~~~~~p~~l~~l~-----~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCP-----RLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCCSSSTTGGGGGCT-----TCCEEECTTSGGGGS
T ss_pred CCCCCCCCCcHHHhcCC-----CCCEEEecCCcCCCC
Confidence 66666554 55566555 666666666666643
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=7.3e-16 Score=127.00 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=116.5
Q ss_pred CCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCc-cccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEE
Q 047861 218 LKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPI-GLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFL 296 (368)
Q Consensus 218 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 296 (368)
-+.+++++++++. +|. .+ ..++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 10 ~~~l~~s~~~l~~-ip~---~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 10 GTTVDCTGRGLKE-IPR---DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83 (192)
T ss_dssp TTEEECTTSCCSS-CCS---CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCEEEcCCCCcCc-Ccc---CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE
Confidence 4789999999864 333 22 23899999999999855553 48899999999999999999889999999999999
Q ss_pred EccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcceeccC
Q 047861 297 SLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFSGHMT 361 (368)
Q Consensus 297 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (368)
++++|++++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..+
T Consensus 84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----TCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC-----CCCEEEeCCCCccCcCc
Confidence 9999999988888899999999999999999998888888888 99999999999987655
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=6.7e-16 Score=124.36 Aligned_cols=136 Identities=24% Similarity=0.202 Sum_probs=106.9
Q ss_pred CCCCCCCEEEccCCCCc-cCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCC
Q 047861 189 NSLSSLKVLNLSYCELH-HFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLT 267 (368)
Q Consensus 189 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~ 267 (368)
...++|+.|++++|.+. +..+..+..+++|+.|++++|.+++. . .+..+++|++|++++|.+.+.+|..+..++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--S---NLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--S---SCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--h---hhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 34577888888888877 45566677788888888888888755 3 577888899999999888866777777788
Q ss_pred CCCEEeCCCCcCCCCC-ChhccCCCCCCEEEccCCcccccCC---cccccCCCCCEEecCCCcCcc
Q 047861 268 FLRHLDLSDNEFNSAI-PGWLSKLNDLEFLSLRSNSLQGKIP---TSFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 268 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~~ 329 (368)
+|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 9999999999887632 2677888999999999998885444 478888999999999888764
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=6.1e-16 Score=122.01 Aligned_cols=130 Identities=23% Similarity=0.187 Sum_probs=105.6
Q ss_pred CCCCCCEEEccCCCCc-cCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCC
Q 047861 190 SLSSLKVLNLSYCELH-HFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF 268 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 268 (368)
..++|+.|++++|.+. +..+..+..+++|+.|++++|.+++. . .+..+++|++|++++|.+.+.+|..+..+++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--A---NLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--T---TCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--h---hhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 4567888888888887 56666778888999999999988765 3 6778889999999999988767777777899
Q ss_pred CCEEeCCCCcCCCC-CChhccCCCCCCEEEccCCcccccCC---cccccCCCCCEEecCC
Q 047861 269 LRHLDLSDNEFNSA-IPGWLSKLNDLEFLSLRSNSLQGKIP---TSFVRLCKLTSIDLSF 324 (368)
Q Consensus 269 L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~ 324 (368)
|++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999998763 34678889999999999999886555 4788899999998863
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=5.5e-15 Score=120.05 Aligned_cols=133 Identities=26% Similarity=0.193 Sum_probs=112.0
Q ss_pred CCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEe
Q 047861 194 LKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273 (368)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 273 (368)
.+.++++++.+...+... .++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHH---HhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 467889888887765332 37899999999999876555 578899999999999999866666678999999999
Q ss_pred CCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccch
Q 047861 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS 332 (368)
Q Consensus 274 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 332 (368)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999998777778899999999999999986555567889999999999999998665
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1.7e-14 Score=117.18 Aligned_cols=132 Identities=23% Similarity=0.236 Sum_probs=95.5
Q ss_pred CCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccE
Q 047861 168 LEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVF 247 (368)
Q Consensus 168 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 247 (368)
.+.++++++.+...+. ...++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++
T Consensus 9 ~~~l~~~~~~l~~~p~-----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT-----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG---VFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT-----TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT---TTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC-----CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh---HccCCCccCE
Confidence 4667777777766542 2346788888888888777776777778888888888887755544 5667778888
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccC
Q 047861 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKI 307 (368)
Q Consensus 248 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 307 (368)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 888888887655556677788888888888887655555677788888888888776543
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=4.5e-16 Score=139.49 Aligned_cols=242 Identities=14% Similarity=0.115 Sum_probs=123.6
Q ss_pred CCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCC--------CCCCCEEeCCCCcCCcccchhhh
Q 047861 91 FKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGS--------LSNLQYLDLSQNYLLQVESFSWL 162 (368)
Q Consensus 91 l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~~~~~~ 162 (368)
+++|++|+|++|.+...... -+.++.++.+.+..+.+ ....+.+ +++|++|++.+ .+..++... |
T Consensus 48 l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a-F 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA-F 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT-T
T ss_pred hccCeEEecCcceeEEecCc--ccccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHH-h
Confidence 67777788777766611011 01111123333333322 1234445 77777777776 555544433 6
Q ss_pred cCCCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCC----CccCCCCCccCCCCCC-eEEccCCC----------
Q 047861 163 SGLSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCE----LHHFPPSSSANFSSLK-ALDLSQNQ---------- 227 (368)
Q Consensus 163 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~L~-~L~l~~n~---------- 227 (368)
..+++|+.+++..+.+...... .+..+.++..+...... ........+..+..|+ .+.+....
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~--aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~ 198 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPE--ALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAG 198 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTT--SSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTT
T ss_pred hcCcccceEEcCCCCccccchh--hhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcc
Confidence 6777777777777766544332 22445555555443321 1122223344444444 23332211
Q ss_pred --------------CCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCC
Q 047861 228 --------------FNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDL 293 (368)
Q Consensus 228 --------------l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 293 (368)
+...... .....+++|+.+++.+|.+.......|..+++|+++++.+| ++......+..+++|
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~--~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L 275 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFK--LIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRL 275 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHH--HHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred cCccccceEEEeeeecHHHHH--HHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhc
Confidence 1000000 01112566666666666665444445666666666666665 554455566666666
Q ss_pred C-EEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEE
Q 047861 294 E-FLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLV 350 (368)
Q Consensus 294 ~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~ 350 (368)
+ .+++.+ .++...+.++.+|++|+.+++++|.++...+..|..++ +|+.|+
T Consensus 276 ~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~-----~L~~ly 327 (329)
T 3sb4_A 276 AGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV-----PSKLIY 327 (329)
T ss_dssp CEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC-----CCCEEE
T ss_pred cEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc-----chhhhc
Confidence 6 666666 45444455666666666666666666655555566555 666654
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.6e-14 Score=118.94 Aligned_cols=129 Identities=26% Similarity=0.264 Sum_probs=110.7
Q ss_pred CEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeC
Q 047861 195 KVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDL 274 (368)
Q Consensus 195 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 274 (368)
+.++++++.+...+.. + .++|++|++++|.++. ++. .+.++++|+.|++++|.+++..+..+..+++|++|++
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~-ip~---~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTL-VPK---ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCS-CCG---GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCch-hHH---HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 5788999988776533 3 3689999999999973 444 7889999999999999999777788999999999999
Q ss_pred CCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCccc
Q 047861 275 SDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 275 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+..+
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999988888899999999999999999965566788999999999999998753
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=5.2e-14 Score=115.85 Aligned_cols=127 Identities=23% Similarity=0.261 Sum_probs=104.9
Q ss_pred CEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEE
Q 047861 169 EHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFF 248 (368)
Q Consensus 169 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L 248 (368)
+.++++++.+...+. .-.++|++|++++|.+...+ ..+..+++|+.|++++|.+++..+. .+.++++|++|
T Consensus 13 ~~l~~~~~~l~~ip~-----~~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~---~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-----GIPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQ---SFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCSSCCS-----CCCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEE
T ss_pred CEEEcCCCCCCcCCC-----CCCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHh---HccCCCCCCEE
Confidence 678888888877654 12468899999999887554 6788889999999999998876665 68888999999
Q ss_pred EccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCccc
Q 047861 249 DLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 249 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
++++|.+++..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99999998777777888999999999999998766667888899999999999876
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1.2e-14 Score=118.03 Aligned_cols=82 Identities=24% Similarity=0.225 Sum_probs=37.2
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCc--ccccCCCCCEEe
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPT--SFVRLCKLTSID 321 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~ 321 (368)
+|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444421 23444444555555555444332233344455555555555443 2332 444455555555
Q ss_pred cCCCcCc
Q 047861 322 LSFVKLS 328 (368)
Q Consensus 322 l~~n~l~ 328 (368)
+++|.++
T Consensus 120 l~~N~i~ 126 (176)
T 1a9n_A 120 ILRNPVT 126 (176)
T ss_dssp CCSSGGG
T ss_pred ecCCCCC
Confidence 5555544
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=4e-13 Score=123.15 Aligned_cols=248 Identities=12% Similarity=0.104 Sum_probs=163.6
Q ss_pred ccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCC
Q 047861 86 LSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGL 165 (368)
Q Consensus 86 ~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 165 (368)
.+|.++ +|+.+.+..+ ++.. -..++.+ .+|+.+.+.. .+..+....+.+|++|+.+++.+|.+..++... +. .
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I-~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a-F~-~ 202 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSI-GDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST-FV-Y 202 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEE-CTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT-TT-T
T ss_pred hhcccC-CccEEEeCCC-ccEE-CHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh-Ee-e
Confidence 355564 6888887665 4432 2234444 3688888875 566555667788888888888888777766554 33 4
Q ss_pred CCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCc
Q 047861 166 SLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNL 245 (368)
Q Consensus 166 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L 245 (368)
.+|+.+.+..+ +...... ++..+++|+.+++..+ +.......|.+ .+|+.+.+.. .++..... .|.++++|
T Consensus 203 ~~L~~l~lp~~-l~~I~~~--aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~---aF~~c~~L 273 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQ--AFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASR---AFYYCPEL 273 (401)
T ss_dssp CCCSEEECCTT-CCEECTT--TTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTT---TTTTCTTC
T ss_pred cccCEEEeCCc-hheehhh--HhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChh---HhhCCCCC
Confidence 78888888744 4333222 4467788888888764 55555666666 6788888854 34433333 67788888
Q ss_pred cEEEccCCcCC-----CCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEE
Q 047861 246 VFFDLSGNQFQ-----GKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSI 320 (368)
Q Consensus 246 ~~L~l~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 320 (368)
+.+.+.++.+. ......|..+++|+.+.+.+ .++......+..+++|+.+.|..+ ++..-..++.++ +|+.+
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEE
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEE
Confidence 88888877654 23345677788888888874 466555667788888888888655 554456677788 88888
Q ss_pred ecCCCcCcccchhhHhhhcccccccccEEEccCCcc
Q 047861 321 DLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQF 356 (368)
Q Consensus 321 ~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l 356 (368)
++.+|.........+..++ .+++.|.+..+.+
T Consensus 351 ~l~~n~~~~l~~~~F~~~~----~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 351 KVEGTTPPQVFEKVWYGFP----DDITVIRVPAESV 382 (401)
T ss_dssp EECCSSCCBCCCSSCCCSC----TTCCEEEECGGGH
T ss_pred EEcCCCCcccccccccCCC----CCccEEEeCHHHH
Confidence 8888877654444444442 1567777766543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=2.6e-14 Score=128.02 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=83.4
Q ss_pred CCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCC-EEeCCCCcCCCCCChhccCCCCC
Q 047861 215 FSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLR-HLDLSDNEFNSAIPGWLSKLNDL 293 (368)
Q Consensus 215 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L 293 (368)
+++|+.+++++|.++..... .|.++++|+.+++.+| +.......|..+++|+ .+++.+ .++...+..+..+++|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccC
Confidence 67899999998888755555 6888889999999887 6545556788888998 999988 6766667788889999
Q ss_pred CEEEccCCcccccCCcccccCCCCCEEec
Q 047861 294 EFLSLRSNSLQGKIPTSFVRLCKLTSIDL 322 (368)
Q Consensus 294 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 322 (368)
+++++++|.++..-+.++.++++|+.++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999888888666778889999998864
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=4.6e-14 Score=114.48 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=91.0
Q ss_pred CCCCCCEEEccCCCCccCCCCCccCC-CCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCC
Q 047861 190 SLSSLKVLNLSYCELHHFPPSSSANF-SSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF 268 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 268 (368)
.+.+|+.|++++|.+... +. +..+ ++|+.|++++|.+++. . .+..+++|++|++++|.+.+..+..+..+++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~---~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--D---GFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--C---CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--c---ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 455666666666666544 22 3333 3777777777777653 2 5667778888888888777433333467788
Q ss_pred CCEEeCCCCcCCCCCCh--hccCCCCCCEEEccCCcccccCCc----ccccCCCCCEEecCCCcCcc
Q 047861 269 LRHLDLSDNEFNSAIPG--WLSKLNDLEFLSLRSNSLQGKIPT----SFVRLCKLTSIDLSFVKLSQ 329 (368)
Q Consensus 269 L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~ 329 (368)
|++|++++|.++. ++. .+..+++|++|++++|.++ .+|. .+..+++|+.|++++|....
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888888888854 444 6778888888888888887 4555 37788888888888887664
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=4.4e-12 Score=116.23 Aligned_cols=227 Identities=11% Similarity=0.104 Sum_probs=170.6
Q ss_pred cccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcC
Q 047861 85 NLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSG 164 (368)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (368)
..+|.++ +|+.+.+.. .++.. -...+..|++|+.+++..++++......+. +.+|+.+.+..+ +..++.. .|..
T Consensus 151 ~~aF~~~-~L~~i~lp~-~l~~I-~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~-aF~~ 224 (401)
T 4fdw_A 151 DMAFFNS-TVQEIVFPS-TLEQL-KEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQ-AFLK 224 (401)
T ss_dssp TTTTTTC-CCCEEECCT-TCCEE-CSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTT-TTTT
T ss_pred HHhcCCC-CceEEEeCC-CccEe-hHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhh-HhhC
Confidence 3456664 699999986 55543 346788999999999999998877666665 689999999865 4554443 3889
Q ss_pred CCCCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCC-----Cccccccchh
Q 047861 165 LSLLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFN-----NSLFQFGSWV 239 (368)
Q Consensus 165 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~ 239 (368)
+++|+.+.+..+ +...... ++.. .+|+.+.+. +.+.......|.++++|+.+++.++.+. ..... .|
T Consensus 225 ~~~L~~l~l~~~-l~~I~~~--aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF 296 (401)
T 4fdw_A 225 TSQLKTIEIPEN-VSTIGQE--AFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CL 296 (401)
T ss_dssp CTTCCCEECCTT-CCEECTT--TTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT---TT
T ss_pred CCCCCEEecCCC-ccCcccc--cccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH---Hh
Confidence 999999999874 3333322 2233 689999994 5577777888999999999999988764 12223 68
Q ss_pred cCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCC-CCC
Q 047861 240 FGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLC-KLT 318 (368)
Q Consensus 240 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~ 318 (368)
.++++|+.+.+.. .+.......|..+++|+.+.+..+ ++......+..+ +|+.+++.+|.........+..++ +++
T Consensus 297 ~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 297 EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCC
T ss_pred hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCcc
Confidence 8999999999984 465455567888999999999665 665566788888 999999999987755556677774 788
Q ss_pred EEecCCCcCc
Q 047861 319 SIDLSFVKLS 328 (368)
Q Consensus 319 ~L~l~~n~l~ 328 (368)
.|.+..+.+.
T Consensus 374 ~l~vp~~~~~ 383 (401)
T 4fdw_A 374 VIRVPAESVE 383 (401)
T ss_dssp EEEECGGGHH
T ss_pred EEEeCHHHHH
Confidence 9988876543
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=6.5e-13 Score=106.91 Aligned_cols=109 Identities=27% Similarity=0.199 Sum_probs=94.1
Q ss_pred CCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEE
Q 047861 217 SLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFL 296 (368)
Q Consensus 217 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 296 (368)
..+.+++++|.++.. |. .+ .++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 10 ~~~~l~~s~n~l~~i-p~---~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PT---GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCSSC-CS---CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcCcc-Cc---cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 468899999998864 33 22 3789999999999998778889999999999999999998777778899999999
Q ss_pred EccCCcccccCCcccccCCCCCEEecCCCcCcccc
Q 047861 297 SLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDL 331 (368)
Q Consensus 297 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 331 (368)
+|++|++++..+..+..+++|+.|+|++|.+....
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99999999766667899999999999999998754
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=7.1e-16 Score=127.73 Aligned_cols=132 Identities=23% Similarity=0.241 Sum_probs=80.1
Q ss_pred CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCC
Q 047861 211 SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKL 290 (368)
Q Consensus 211 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 290 (368)
.+..+++|++|++++|.+++ .+ .+.++++|++|++++|.+. .+|..+..+++|++|++++|.+++ ++ .+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~----~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS----SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC----CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc----ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccC
Confidence 45556666666666666654 22 3455666677777766666 455555555667777777776664 23 45566
Q ss_pred CCCCEEEccCCcccccCC-cccccCCCCCEEecCCCcCcccchh----------hHhhhcccccccccEEEccCCcce
Q 047861 291 NDLEFLSLRSNSLQGKIP-TSFVRLCKLTSIDLSFVKLSQDLSQ----------VLDIFSACGAYALESLVLRSCQFS 357 (368)
Q Consensus 291 ~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~----------~l~~~~~~~~~~L~~L~l~~n~l~ 357 (368)
++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..++ +|++|| ++.++
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~-----~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-----NLKKLD--GMPVD 185 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS-----SCSEEC--CGGGT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC-----CcEEEC--CcccC
Confidence 677777777776663211 3566677777777777777655443 244455 777765 44443
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.1e-14 Score=132.12 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=78.4
Q ss_pred CCCCeEEccCCCCCCccccc-cchh-cCCCCccEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCCCC----Ch
Q 047861 216 SSLKALDLSQNQFNNSLFQF-GSWV-FGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLRHLDLSDNEFNSAI----PG 285 (368)
Q Consensus 216 ~~L~~L~l~~n~l~~~~~~~-~~~~-~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~ 285 (368)
++|+.|+|++|.+++..... ...+ ...++|++|++++|.++.. ++..+...++|++|+|++|.+++.. +.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 35666666666665433221 1111 2345677777777766431 2333455667777777777765432 34
Q ss_pred hccCCCCCCEEEccCCccccc----CCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEE--ccCCcce
Q 047861 286 WLSKLNDLEFLSLRSNSLQGK----IPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLV--LRSCQFS 357 (368)
Q Consensus 286 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~--l~~n~l~ 357 (368)
.+...++|++|+|++|.+++. ++..+..+++|++|+|++|.+++.....+.......-..|+.+. +..+.++
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 455667777777777777643 33445566778888888888877666666654311111255665 5555554
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=5.5e-15 Score=134.23 Aligned_cols=166 Identities=19% Similarity=0.173 Sum_probs=117.3
Q ss_pred CCCCEEEccCCCCccCCCCCc----c-CCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccc---
Q 047861 192 SSLKVLNLSYCELHHFPPSSS----A-NFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGL--- 263 (368)
Q Consensus 192 ~~L~~L~l~~~~~~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l--- 263 (368)
+.|+.|++++|.++......+ . ..++|++|+|++|.+++..... ....+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~--l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT--LLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHH--THHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHH--HHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 455566666665544322211 1 2368888999888887543321 22345689999999999875433333
Q ss_pred --cCCCCCCEEeCCCCcCCCC----CChhccCCCCCCEEEccCCccccc----CCcccccCCCCCEEecCCCcCcccchh
Q 047861 264 --GNLTFLRHLDLSDNEFNSA----IPGWLSKLNDLEFLSLRSNSLQGK----IPTSFVRLCKLTSIDLSFVKLSQDLSQ 333 (368)
Q Consensus 264 --~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~ 333 (368)
...+.|++|+|++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|+.|+|++|.+++....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3468899999999999763 334457789999999999998753 356677888999999999999986544
Q ss_pred hH----hhhcccccccccEEEccCCcceeccCccc
Q 047861 334 VL----DIFSACGAYALESLVLRSCQFSGHMTNQL 364 (368)
Q Consensus 334 ~l----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (368)
.+ ...+ +|++|+|++|.|++.-...+
T Consensus 230 ~l~~~L~~~~-----~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 230 ALARAAREHP-----SLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHCS-----SCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHhCC-----CCCEEeccCCCCCHHHHHHH
Confidence 43 3345 99999999999986544433
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=1.5e-12 Score=105.22 Aligned_cols=108 Identities=20% Similarity=0.159 Sum_probs=91.7
Q ss_pred CCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEE
Q 047861 218 LKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLS 297 (368)
Q Consensus 218 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 297 (368)
-+.+++++++++.. |. .+ .++|++|++++|.+.+..|..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 14 ~~~l~~~~n~l~~i-P~---~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLASV-PA---GI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCSSC-CS---CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCCCcc-CC---Cc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 47899999998743 33 22 27899999999999987788899999999999999999986666678999999999
Q ss_pred ccCCcccccCCcccccCCCCCEEecCCCcCcccc
Q 047861 298 LRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDL 331 (368)
Q Consensus 298 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 331 (368)
|++|++++..+..+..+++|+.|+|++|.+....
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 9999999655556899999999999999998643
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=3.4e-12 Score=102.69 Aligned_cols=108 Identities=25% Similarity=0.192 Sum_probs=91.7
Q ss_pred CCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEE
Q 047861 193 SLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHL 272 (368)
Q Consensus 193 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 272 (368)
..+.++++++.+...+.. + .++|+.|++++|.+++..+. .+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPG---VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChh---hhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 357899999998876543 3 37899999999999987776 78899999999999999996666677899999999
Q ss_pred eCCCCcCCCCCChhccCCCCCCEEEccCCccccc
Q 047861 273 DLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGK 306 (368)
Q Consensus 273 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 306 (368)
++++|.+++..+..+..+++|++|+|++|.+...
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999999887667788999999999999988743
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=2.2e-15 Score=124.76 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=110.5
Q ss_pred CCCCCeEEccCCCCCCcccc---ccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCC
Q 047861 215 FSSLKALDLSQNQFNNSLFQ---FGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLN 291 (368)
Q Consensus 215 ~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 291 (368)
...++.++++.+.+++..+. ++..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34555555555555544332 22267889999999999999985 66 7888999999999999998 5777777789
Q ss_pred CCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccch-hhHhhhcccccccccEEEccCCcceeccCc
Q 047861 292 DLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLS-QVLDIFSACGAYALESLVLRSCQFSGHMTN 362 (368)
Q Consensus 292 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (368)
+|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..++ +|++|++++|++++.+|.
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-----~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALD-----KLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTT-----TCSEEEECSCHHHHHHHT
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCC-----CCCEEEecCCcccccccc
Confidence 99999999999985 45 68889999999999999997433 4677777 999999999999887665
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=9.4e-12 Score=100.44 Aligned_cols=105 Identities=24% Similarity=0.213 Sum_probs=89.3
Q ss_pred CCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEe
Q 047861 194 LKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLD 273 (368)
Q Consensus 194 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 273 (368)
-+.++++++.+...+. .+ .++|+.|++++|.+++..+. .+.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 14 ~~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLEPG---VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SSEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccCHH---HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 3688999998876654 33 37899999999999987776 788999999999999999965555678899999999
Q ss_pred CCCCcCCCCCChhccCCCCCCEEEccCCccc
Q 047861 274 LSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQ 304 (368)
Q Consensus 274 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 304 (368)
+++|.+++..+..+..+++|++|++++|.+.
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999998766666889999999999999887
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=105.19 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=87.5
Q ss_pred CeEEccCC-CCCCccccccchhcCCCCccEEEccC-CcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEE
Q 047861 219 KALDLSQN-QFNNSLFQFGSWVFGLHNLVFFDLSG-NQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFL 296 (368)
Q Consensus 219 ~~L~l~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 296 (368)
..++++++ +++. +|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+++..+..+..+++|+.|
T Consensus 11 ~~v~~~~~n~l~~-ip~----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp SCEECCSSCCCTT-TTT----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred CEEEcCCCCCCCc-cCC----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 45788887 7774 332 66788999999996 99986666789999999999999999999888889999999999
Q ss_pred EccCCcccccCCcccccCCCCCEEecCCCcCccc
Q 047861 297 SLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 297 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
+|++|++++..+..+..++ |+.|+|.+|.+...
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999999855455555554 99999999998854
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.08 E-value=1e-10 Score=105.39 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=98.4
Q ss_pred hcCCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchh--cCCCCccEEEccC--CcCCCC----
Q 047861 187 VTNSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWV--FGLHNLVFFDLSG--NQFQGK---- 258 (368)
Q Consensus 187 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~~L~~L~l~~--n~l~~~---- 258 (368)
.+..+|+|++|.++++.-... +. + ..++|+.|++..+.++..... .+ ..+++|+.|+|+. +...+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~~~~l~---~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLPDSVVE---DILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCCHHHHH---HHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCChHHHH---HHHHccCCCCcEEEEeccccccccchhHH
Confidence 445667777777776621111 11 2 267888888887777644332 23 2678888888753 211111
Q ss_pred -CCccc--cCCCCCCEEeCCCCcCCCCCChhc---cCCCCCCEEEccCCccccc----CCcccccCCCCCEEecCCCcCc
Q 047861 259 -IPIGL--GNLTFLRHLDLSDNEFNSAIPGWL---SKLNDLEFLSLRSNSLQGK----IPTSFVRLCKLTSIDLSFVKLS 328 (368)
Q Consensus 259 -~~~~l--~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 328 (368)
+...+ ..+|+|++|++.+|.+++..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11122 247889999998888765433333 2567899999998888754 3444456788999999999888
Q ss_pred ccchhhHhhhcccccccccEEEccCCc
Q 047861 329 QDLSQVLDIFSACGAYALESLVLRSCQ 355 (368)
Q Consensus 329 ~~~~~~l~~~~~~~~~~L~~L~l~~n~ 355 (368)
+.....+...- ..++++++++
T Consensus 321 d~~~~~l~~al------g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL------PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC------CSEEECCSBC
T ss_pred HHHHHHHHHHc------CCEEEecCCc
Confidence 76666655411 1557777765
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=6e-10 Score=100.26 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=67.4
Q ss_pred EEeCCCC-CCCCCchhhhhcCCCCCCCEEEccC-CCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccE
Q 047861 170 HLDLSQA-DLSKATDWLLVTNSLSSLKVLNLSY-CELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVF 247 (368)
Q Consensus 170 ~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~ 247 (368)
.++.+++ .+...+. +..+++|+.|++++ |.+.+..+..+..+++|+.|+|++|++++..+. .+.++++|+.
T Consensus 12 ~v~~~~~n~l~~ip~----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---AFHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT---GGGSCSCCCE
T ss_pred EEEcCCCCCCCccCC----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH---HhcCCcCCCE
Confidence 4566665 5555443 45666777777775 777777666677777777777777777765555 5667777777
Q ss_pred EEccCCcCCCCCCccccCCCCCCEEeCCCCcCCC
Q 047861 248 FDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNS 281 (368)
Q Consensus 248 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 281 (368)
|+|++|.+.+..+..+..++ |+.|+|.+|.+..
T Consensus 85 L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 77777777644444444444 7777777776653
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.06 E-value=1.3e-08 Score=93.06 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=61.6
Q ss_pred cccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhccc
Q 047861 262 GLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSAC 341 (368)
Q Consensus 262 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~ 341 (368)
.+..+.+|+.+.+..+ ++......+..+.+|+.+++.++ ++..-..++.+|.+|+.+++..+ ++......|..+.
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~-- 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI-- 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT--
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC--
Confidence 3456777888887654 44445567788899999998754 55344567888999999999766 6555556677777
Q ss_pred ccccccEEEccCC
Q 047861 342 GAYALESLVLRSC 354 (368)
Q Consensus 342 ~~~~L~~L~l~~n 354 (368)
+|+++++..+
T Consensus 367 ---~L~~i~lp~~ 376 (394)
T 4fs7_A 367 ---NLKKVELPKR 376 (394)
T ss_dssp ---TCCEEEEEGG
T ss_pred ---CCCEEEECCC
Confidence 9999998765
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=2.3e-10 Score=103.02 Aligned_cols=139 Identities=17% Similarity=0.195 Sum_probs=96.8
Q ss_pred CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCcccc--CCCCCCEEeCCC--CcCCCC----
Q 047861 211 SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLG--NLTFLRHLDLSD--NEFNSA---- 282 (368)
Q Consensus 211 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~--n~l~~~---- 282 (368)
.+..+++|+.|+++++.-. ..+ .+ ..++|+.|++..+.+.......+. .+|+|++|+|+. +...+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~----~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIG----KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCC----SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHhcCCCCcEEEEeCCCCc-eec----cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3456789999999887311 111 12 378999999999887643333343 689999999863 221111
Q ss_pred -CChhc--cCCCCCCEEEccCCcccccCCcccc---cCCCCCEEecCCCcCcccchhhH----hhhcccccccccEEEcc
Q 047861 283 -IPGWL--SKLNDLEFLSLRSNSLQGKIPTSFV---RLCKLTSIDLSFVKLSQDLSQVL----DIFSACGAYALESLVLR 352 (368)
Q Consensus 283 -~~~~l--~~l~~L~~L~l~~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~l----~~~~~~~~~~L~~L~l~ 352 (368)
+...+ ..+|+|+.|++.+|.+.+..+..+. .+++|+.|+|+.|.+++..+..+ ..++ +|+.|+++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~-----~L~~L~L~ 315 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIK-----HLKFINMK 315 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHT-----TCSEEECC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCC-----cceEEECC
Confidence 11122 3579999999999998765444443 57899999999999998655444 3445 99999999
Q ss_pred CCcceecc
Q 047861 353 SCQFSGHM 360 (368)
Q Consensus 353 ~n~l~~~~ 360 (368)
+|.++...
T Consensus 316 ~n~i~d~~ 323 (362)
T 2ra8_A 316 YNYLSDEM 323 (362)
T ss_dssp SBBCCHHH
T ss_pred CCcCCHHH
Confidence 99987653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.00 E-value=4.8e-08 Score=89.37 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=45.8
Q ss_pred cccccCCCCCcEEECCCCC---CCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhh
Q 047861 85 NLSLVDFKHLIHLDLSGND---FQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSW 161 (368)
Q Consensus 85 ~~~~~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 161 (368)
..+|.+|.+|+.+.+..+. ++.. -..++..+.+|+.+.+..+ ++......+..+.+|+.+.+..+. ..+.. ..
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~-~~ 155 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVAD-GM 155 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECT-TT
T ss_pred HHHhhCCccCceEeecCCCCCeeeEe-chhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecc-cc
Confidence 3356777777777776542 3322 1234555666666655432 333334455666777777665432 22221 12
Q ss_pred hcCCCCCCEEeCCC
Q 047861 162 LSGLSLLEHLDLSQ 175 (368)
Q Consensus 162 ~~~l~~L~~L~l~~ 175 (368)
+..+..|+.+.+..
T Consensus 156 F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 156 FSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTCTTCCEEECCT
T ss_pred eecccccccccccc
Confidence 55566666666543
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.99 E-value=1.7e-08 Score=92.41 Aligned_cols=144 Identities=13% Similarity=0.046 Sum_probs=93.1
Q ss_pred CCCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCC
Q 047861 189 NSLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTF 268 (368)
Q Consensus 189 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~ 268 (368)
..+..++.+.+..+. .......+..+..++.+.+....+.. . .+..+.+|+.+.+..+ +.......|..+.+
T Consensus 250 ~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~---~---~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~ 321 (394)
T 4fs7_A 250 YGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE---K---TFYGCSSLTEVKLLDS-VKFIGEEAFESCTS 321 (394)
T ss_dssp TTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT---T---TTTTCTTCCEEEECTT-CCEECTTTTTTCTT
T ss_pred cccccceeEEcCCCc-ceeeccccccccccceeccCceeecc---c---cccccccccccccccc-cceechhhhcCCCC
Confidence 345555555554432 22333445555666666555433211 1 4667888999988765 44334566888999
Q ss_pred CCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccE
Q 047861 269 LRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALES 348 (368)
Q Consensus 269 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~ 348 (368)
|+.+++..+ ++......+..+.+|+.+.+..+ ++..-..++.+|.+|+.+++..+- + .+...+..+. +|+.
T Consensus 322 L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~-----~L~~ 392 (394)
T 4fs7_A 322 LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTT-----KFKW 392 (394)
T ss_dssp CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTC-----EEEE
T ss_pred CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCC-----CCcE
Confidence 999999754 65555678889999999999876 654556789999999999997542 2 1223444444 6665
Q ss_pred E
Q 047861 349 L 349 (368)
Q Consensus 349 L 349 (368)
+
T Consensus 393 I 393 (394)
T 4fs7_A 393 I 393 (394)
T ss_dssp E
T ss_pred E
Confidence 4
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=1.3e-09 Score=88.62 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=62.1
Q ss_pred hcCCCCccEEEccCC-cCCCC----CCccccCCCCCCEEeCCCCcCCCCC----ChhccCCCCCCEEEccCCccccc---
Q 047861 239 VFGLHNLVFFDLSGN-QFQGK----IPIGLGNLTFLRHLDLSDNEFNSAI----PGWLSKLNDLEFLSLRSNSLQGK--- 306 (368)
Q Consensus 239 ~~~~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--- 306 (368)
+...+.|++|++++| .+... +...+...++|++|+|++|.+.+.. ...+...++|++|+|++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344445555555555 44321 2223344455666666666665432 22333445666666666666543
Q ss_pred -CCcccccCCCCCEEec--CCCcCcccchhhHhhhcccccccccEEEccCCcce
Q 047861 307 -IPTSFVRLCKLTSIDL--SFVKLSQDLSQVLDIFSACGAYALESLVLRSCQFS 357 (368)
Q Consensus 307 -~~~~l~~l~~L~~L~l--~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l~ 357 (368)
+...+...++|++|+| ++|.+.+.....+...- ...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH-HhCCCcCEEeccCCCCC
Confidence 3445566666777777 66777665443333321 11126777777777664
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.82 E-value=2e-07 Score=85.18 Aligned_cols=246 Identities=10% Similarity=0.106 Sum_probs=126.1
Q ss_pred cccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCcCCcccchhhhcCCC
Q 047861 87 SLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNYLLQVESFSWLSGLS 166 (368)
Q Consensus 87 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 166 (368)
+|..+.+|+.+.+..+ ++.. -...+..+.+|+.+.+... +.......+..+..|+.+.+..+ +..+.... +. ..
T Consensus 109 aF~~c~~L~~i~~~~~-~~~I-~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~a-F~-~~ 182 (394)
T 4gt6_A 109 AFMFCSELTDIPILDS-VTEI-DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERA-FT-GT 182 (394)
T ss_dssp TTTTCTTCCBCGGGTT-CSEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTT-TT-TC
T ss_pred hchhcccceeeccCCc-ccee-hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccc-cc-cc
Confidence 5666777777666543 2221 2234566777888777543 33333455667777777777654 22222222 22 24
Q ss_pred CCCEEeCCCCCCCCCchhhhhcCCCCCCCEEEccCC------------------------------------CCccCCCC
Q 047861 167 LLEHLDLSQADLSKATDWLLVTNSLSSLKVLNLSYC------------------------------------ELHHFPPS 210 (368)
Q Consensus 167 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------------------------------~~~~~~~~ 210 (368)
.|+.+.+......-.. ..+..+.+++....... .+......
T Consensus 183 ~l~~i~ip~~~~~i~~---~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~ 259 (394)
T 4gt6_A 183 ALTQIHIPAKVTRIGT---NAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETH 259 (394)
T ss_dssp CCSEEEECTTCCEECT---TTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTT
T ss_pred ceeEEEECCccccccc---chhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccc
Confidence 5666655432211110 01223333333322111 12223344
Q ss_pred CccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCCCEEeCCCCcCCCCCChhccCC
Q 047861 211 SSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKL 290 (368)
Q Consensus 211 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 290 (368)
.|..+..|+.+.+..+..+ .... .+.+++.|+.+.+.. .+.......|..+.+|+.+.+..+ ++......+..+
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~---aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTG---AFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTT---TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeeecccccEEecccccce-ecCc---ccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 5666777777777654321 2222 566777777777753 333233455667778888887654 444445567777
Q ss_pred CCCCEEEccCCcccccCCcccccCCCCCEEecCCCcCcccchhhHhhhcccccccccEEEccCCcc
Q 047861 291 NDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSFVKLSQDLSQVLDIFSACGAYALESLVLRSCQF 356 (368)
Q Consensus 291 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~l 356 (368)
.+|+.+.+..+ ++..-..++.+|.+|+.+++.++.... ..+.... +|+.+.+..+.+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~-----~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDS-----GLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCC-----CC----------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccC-----CCCEEEeCCCCE
Confidence 88888888654 443345567778888888887764321 2222233 677777665543
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.70 E-value=2.7e-06 Score=77.22 Aligned_cols=67 Identities=6% Similarity=0.087 Sum_probs=35.9
Q ss_pred ccccccccccCCCCCcEEECCCCCCCCCcCCcccCCCCCCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCC
Q 047861 80 LVGKINLSLVDFKHLIHLDLSGNDFQGIQIPKYLGSLKNLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQN 151 (368)
Q Consensus 80 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 151 (368)
++..-..+|.+|.+|+.++|..+ ++.. -..++.++ +|+.+.+..+ +......++.. .+|+.+.+..+
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~ 123 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA 123 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT
T ss_pred ccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCc
Confidence 44333457888888888888643 4322 22334444 5666665432 33332333433 36777776554
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.67 E-value=7.9e-09 Score=82.18 Aligned_cols=86 Identities=13% Similarity=0.094 Sum_probs=57.5
Q ss_pred CccEEEccCCcCCCCCCccccCCCCCCEEeCCCC-cCCCCCChhccCC----CCCCEEEccCC-cccccCCcccccCCCC
Q 047861 244 NLVFFDLSGNQFQGKIPIGLGNLTFLRHLDLSDN-EFNSAIPGWLSKL----NDLEFLSLRSN-SLQGKIPTSFVRLCKL 317 (368)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l----~~L~~L~l~~n-~l~~~~~~~l~~l~~L 317 (368)
.|+.|++++|.++......+..+++|++|+|++| .+++.....++.+ ++|++|+|++| ++++.-...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 5777777777766555555667777777777777 3666555556553 36777777777 3665555556677777
Q ss_pred CEEecCCCc-Ccc
Q 047861 318 TSIDLSFVK-LSQ 329 (368)
Q Consensus 318 ~~L~l~~n~-l~~ 329 (368)
+.|++++|. +++
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 777777775 443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.66 E-value=5.2e-09 Score=85.09 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=71.6
Q ss_pred CCCCCCeEEccCC-CCCCccc-cccchhcCCCCccEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCCC----C
Q 047861 214 NFSSLKALDLSQN-QFNNSLF-QFGSWVFGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLRHLDLSDNEFNSA----I 283 (368)
Q Consensus 214 ~~~~L~~L~l~~n-~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~ 283 (368)
..++|++|+|++| .+.+... .+...+...++|++|++++|.+... +...+...+.|++|+|++|.+++. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3455556666555 5543221 1222344556666666666665532 223334456777777777777653 3
Q ss_pred ChhccCCCCCCEEEc--cCCccccc----CCcccccCCCCCEEecCCCcCccc
Q 047861 284 PGWLSKLNDLEFLSL--RSNSLQGK----IPTSFVRLCKLTSIDLSFVKLSQD 330 (368)
Q Consensus 284 ~~~l~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~ 330 (368)
...+...++|++|+| ++|.+.+. +...+...++|++|++++|.+...
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 345566678888888 77877644 445566678899999999887654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=3.5e-08 Score=78.42 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=42.3
Q ss_pred CCCEEeCCCCcCCCCCChhccCCCCCCEEEccCC-cccccCCcccccC----CCCCEEecCCCc-CcccchhhHhhhccc
Q 047861 268 FLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSN-SLQGKIPTSFVRL----CKLTSIDLSFVK-LSQDLSQVLDIFSAC 341 (368)
Q Consensus 268 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~l~~~~~~ 341 (368)
.|+.|++++|.+++.....+..+++|++|+|++| .+++.--..+..+ ++|++|+|++|. +++.....+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~-- 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR-- 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT--
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC--
Confidence 4555555555555554455555555555555555 2444333333332 345555555553 5554444444444
Q ss_pred ccccccEEEccCC
Q 047861 342 GAYALESLVLRSC 354 (368)
Q Consensus 342 ~~~~L~~L~l~~n 354 (368)
+|++|++++|
T Consensus 140 ---~L~~L~L~~c 149 (176)
T 3e4g_A 140 ---NLKYLFLSDL 149 (176)
T ss_dssp ---TCCEEEEESC
T ss_pred ---CCCEEECCCC
Confidence 5555555555
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=5.4e-07 Score=77.05 Aligned_cols=78 Identities=23% Similarity=0.316 Sum_probs=39.9
Q ss_pred CCCCCEEeCCCCcCCC--CCChhccCCCCCCEEEccCCcccccCCcccccCC--CCCEEecCCCcCcccch-------hh
Q 047861 266 LTFLRHLDLSDNEFNS--AIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLC--KLTSIDLSFVKLSQDLS-------QV 334 (368)
Q Consensus 266 l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~-------~~ 334 (368)
+++|+.|+|++|.+++ .++..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|.+.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4455555555555544 2233444555666666666655532 2222222 66667777766665443 22
Q ss_pred HhhhcccccccccEEE
Q 047861 335 LDIFSACGAYALESLV 350 (368)
Q Consensus 335 l~~~~~~~~~~L~~L~ 350 (368)
+..+| +|+.||
T Consensus 247 l~~~P-----~L~~LD 257 (267)
T 3rw6_A 247 RERFP-----KLLRLD 257 (267)
T ss_dssp HHHCT-----TCCEES
T ss_pred HHHCc-----ccCeEC
Confidence 44445 777665
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.38 E-value=4.5e-05 Score=69.05 Aligned_cols=128 Identities=10% Similarity=0.074 Sum_probs=71.0
Q ss_pred CCCCCCEEEccCCCCccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccCCcCCCCCCccccCCCCC
Q 047861 190 SLSSLKVLNLSYCELHHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSGNQFQGKIPIGLGNLTFL 269 (368)
Q Consensus 190 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L 269 (368)
.+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++..... .+.++.+|+.+.+..+ +.......+..+++|
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~---aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSF---LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTT---TTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcc---ccceeehhcccccccc-ceecccccccccccc
Confidence 3445555555332 33333445556666666666554 3322222 4556666776666543 222223445666777
Q ss_pred CEEeCCCCcCCCCCChhccCCCCCCEEEccCCcccccCCcccccCCCCCEEecCC
Q 047861 270 RHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSLQGKIPTSFVRLCKLTSIDLSF 324 (368)
Q Consensus 270 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 324 (368)
+.+.+.++.++......+..+.+|+.+.|..+ ++..-..++.+|.+|+.+.+..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 77777666665555556666777777777543 3323345566677777766643
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=7.3e-08 Score=82.42 Aligned_cols=81 Identities=30% Similarity=0.291 Sum_probs=56.2
Q ss_pred cCCCCccEEEccCCcCCC--CCCccccCCCCCCEEeCCCCcCCCCCChhccCCC--CCCEEEccCCcccccCC-------
Q 047861 240 FGLHNLVFFDLSGNQFQG--KIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLN--DLEFLSLRSNSLQGKIP------- 308 (368)
Q Consensus 240 ~~~~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~------- 308 (368)
.++++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456778888888888775 3345556778888888888888763 2233333 88888888888876554
Q ss_pred cccccCCCCCEEec
Q 047861 309 TSFVRLCKLTSIDL 322 (368)
Q Consensus 309 ~~l~~l~~L~~L~l 322 (368)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 24667888888763
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.91 E-value=7.7e-06 Score=66.20 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=29.5
Q ss_pred CCCCCeEEccCC-CCCCccc-cccchhcCCCCccEEEccCCcCCCC----CCccccCCCCCCEEeCCCCcCCC
Q 047861 215 FSSLKALDLSQN-QFNNSLF-QFGSWVFGLHNLVFFDLSGNQFQGK----IPIGLGNLTFLRHLDLSDNEFNS 281 (368)
Q Consensus 215 ~~~L~~L~l~~n-~l~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 281 (368)
-+.|++|+|+++ .+.+... .+...+..-+.|+.|+|++|.+.+. +...+..-+.|++|+|+.|.|++
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 345666666553 4443211 1222344444555555555555421 11222233445555555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=2e-05 Score=63.77 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=43.2
Q ss_pred hcCCCCccEEEccCC-cCCCC----CCccccCCCCCCEEeCCCCcCCCCC----ChhccCCCCCCEEEccCCccccc---
Q 047861 239 VFGLHNLVFFDLSGN-QFQGK----IPIGLGNLTFLRHLDLSDNEFNSAI----PGWLSKLNDLEFLSLRSNSLQGK--- 306 (368)
Q Consensus 239 ~~~~~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~--- 306 (368)
+.+-+.|++|+++++ .+... +...+..-..|+.|+|++|.+.+.. ...+..-+.|++|+|++|.+.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 334455666666553 44321 2233344455666666666665422 22333445566666666665532
Q ss_pred -CCcccccCCCCCEEecCCC
Q 047861 307 -IPTSFVRLCKLTSIDLSFV 325 (368)
Q Consensus 307 -~~~~l~~l~~L~~L~l~~n 325 (368)
+.+.+...+.|++|+|+++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2334444555666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.53 E-value=0.006 Score=45.78 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=26.9
Q ss_pred EEEccCCcCC-CCCCccccCCCCCCEEeCCCCcCCCCCChhccCCCCCCEEEccCCcc
Q 047861 247 FFDLSGNQFQ-GKIPIGLGNLTFLRHLDLSDNEFNSAIPGWLSKLNDLEFLSLRSNSL 303 (368)
Q Consensus 247 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 303 (368)
.++.+++.++ ..+|..+ .++|++|+|++|.|+...+..+..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555443 1333321 13455556665555544444455555555555555544
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.36 E-value=0.0096 Score=44.63 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred CCCEEeCCCCcccCCcchhcCCCCCCCEEeCCCCc
Q 047861 118 NLRYLNLSRANFAGVTPYQLGSLSNLQYLDLSQNY 152 (368)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 152 (368)
+|++|+|++|+++...+..+..+++|++|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45566666666555544455555566666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=57.34 E-value=18 Score=25.09 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=20.7
Q ss_pred ccCCCCCccCCCCCCeEEccCCCCCCccccccchhcCCCCccEEEccC
Q 047861 205 HHFPPSSSANFSSLKALDLSQNQFNNSLFQFGSWVFGLHNLVFFDLSG 252 (368)
Q Consensus 205 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 252 (368)
+......|.+|.+|+.+.+..+ ++..... .|.++.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~---aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDG---MFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTT---SSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHH---HHhccCCccEEEEcC
Confidence 3344445555555665555543 2222222 444555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.59 E-value=55 Score=22.49 Aligned_cols=14 Identities=0% Similarity=0.019 Sum_probs=6.3
Q ss_pred cccCCCCCcEEECC
Q 047861 87 SLVDFKHLIHLDLS 100 (368)
Q Consensus 87 ~~~~l~~L~~L~l~ 100 (368)
+|.+|..|+.+.|-
T Consensus 15 aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 15 LFAGNTVIREITVQ 28 (100)
T ss_dssp TTTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcC
Confidence 44444444444443
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.75 E-value=32 Score=15.82 Aligned_cols=10 Identities=30% Similarity=1.185 Sum_probs=6.8
Q ss_pred CCCcccccEE
Q 047861 45 EDCCAWGGVV 54 (368)
Q Consensus 45 ~~~c~w~gv~ 54 (368)
+-.|.|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3468888764
Done!