BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047862
(769 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 169 bits (428), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 190/754 (25%), Positives = 310/754 (41%), Gaps = 141/754 (18%)
Query: 61 VPRLGLPLYEWWSEALHGVSYIGRRTNTPPGTHFDSEVPGATSFPTVILTTASFNESLWK 120
VPR+GLP + + G R N P D T+FP I+ +++N L +
Sbjct: 46 VPRVGLPAF------VLADGPAGLRIN--PTRENDENTYYTTAFPVEIMLASTWNRELLE 97
Query: 121 KIGQTVSTEARAMHNLGNAGL-TFWSPNINVVRDPRWGRVMETPGEDPFVVGRYSVNYVR 179
++G+ + E R G+ +P +N+ R+P GR E EDP + G + ++V+
Sbjct: 98 EVGKAMGEEVREY------GVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVK 151
Query: 180 GLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIETFNLP 239
G+Q V AC KH+ A N + +R D+ V+E+ + E +
Sbjct: 152 GVQS--------------QGVGACIKHFVA----NNQETNRMVVDTIVSERALREIYLRG 193
Query: 240 FEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESH 299
FE+ V++ SVM +YN++NG + LL + +R +W G+++SD + VE
Sbjct: 194 FEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYAGDNPVEQL 253
Query: 300 KFLNDTKEEAVARVLKAGLDLDCGDYYTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRLG 359
K ND A + + + + A+++GK+ E +D +R + VL+
Sbjct: 254 KAGNDLIMPGKAYQVNTERRDEIEE-----IMEALKEGKLSEEVLDECVRNILKVLVNAP 308
Query: 360 YFDGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKNDNGTLP---------FHNATIK 410
F Y+ K D+ +H ++A EA A+G+VLL+N+ LP F I+
Sbjct: 309 SFK---NYRYSNKPDL--EKHAKVAYEAGAEGVVLLRNEE-ALPLSENSKIALFGTGQIE 362
Query: 411 TL-AVVGPHANATKAMIGNYEGIPCR--------------YISPMTGLSTYGNVNYAFGC 455
T+ G + I EGI R YI M Y ++G
Sbjct: 363 TIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGT 422
Query: 456 ADIACKNDSMISQAT--DAAKNADATIIVTGLDLSIEAEALDRN----DLYLPGFQTQLI 509
++ +S+ AK D +IV I E DR D YL +T LI
Sbjct: 423 IIKPKLPENFLSEKEIHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLI 479
Query: 510 NQVADA--AKGPVILVLMCAGGVDISFAKNNPKIKSILWAGYPGEEGGRAIADIVFGKYN 567
V+ +G ++VL+ G + + IL G+E GR +AD++ G+ N
Sbjct: 480 KTVSREFHEQGKKVIVLLNIGS-PVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRIN 538
Query: 568 PGGKLPLTWYEGNYVDKIPFTSMPLRSVDK-----------LPGRTYKFFDGPVVYPFGY 616
P GKLP T + +Y D +P + P D + R Y F Y FGY
Sbjct: 539 PSGKLPTT-FPRDYSD-VPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGY 596
Query: 617 GLSYTLFKY---NLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQTADLKCNDNYF 673
GLSYT F+Y N++F +++ V+
Sbjct: 597 GLSYTTFEYSDLNVSFDGETLRVQY----------------------------------- 621
Query: 674 TFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRV-YVAAGQSAKVNFTLNVC 731
++N G G EV VY K P G P ++L F + + G+S +V + V
Sbjct: 622 ----RIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVR 677
Query: 732 DSLRIIDFAANS-ILAAGAHTILLGDGAVSFPLQ 764
D + F ++ AG + + +G + + L+
Sbjct: 678 D---LASFNGEEWVVEAGEYEVRVGASSRNIKLK 708
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 189/754 (25%), Positives = 309/754 (40%), Gaps = 141/754 (18%)
Query: 61 VPRLGLPLYEWWSEALHGVSYIGRRTNTPPGTHFDSEVPGATSFPTVILTTASFNESLWK 120
VPR+GLP + + G R N P D T+FP I+ +++N L +
Sbjct: 46 VPRVGLPAF------VLADGPAGLRIN--PTRENDENTYYTTAFPVEIMLASTWNRELLE 97
Query: 121 KIGQTVSTEARAMHNLGNAGL-TFWSPNINVVRDPRWGRVMETPGEDPFVVGRYSVNYVR 179
++G+ + E R G+ +P +N+ R+P GR E EDP + G + ++V+
Sbjct: 98 EVGKAMGEEVREY------GVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVK 151
Query: 180 GLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIETFNLP 239
G+Q V AC KH+ A N + +R D+ V+E+ + E +
Sbjct: 152 GVQS--------------QGVGACIKHFVA----NNQETNRMVVDTIVSERALREIYLRG 193
Query: 240 FEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESH 299
FE+ V++ SVM +YN++NG + LL + +R +W G+++S + VE
Sbjct: 194 FEIAVKKSKPWSVMSAYNKLNGKYCSQNEWLLKKVLREEWGFEGFVMSAWYAGDNPVEQL 253
Query: 300 KFLNDTKEEAVARVLKAGLDLDCGDYYTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRLG 359
K ND A + + + + A+++GK+ E +D +R + VL+
Sbjct: 254 KAGNDLIMPGKAYQVNTERRDEIEE-----IMEALKEGKLSEEVLDECVRNILKVLVNAP 308
Query: 360 YFDGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKNDNGTLP---------FHNATIK 410
F Y+ K D+ +H ++A EA A+G+VLL+N+ LP F I+
Sbjct: 309 SFK---NYRYSNKPDL--EKHAKVAYEAGAEGVVLLRNEE-ALPLSENSKIALFGTGQIE 362
Query: 411 TL-AVVGPHANATKAMIGNYEGIPCR--------------YISPMTGLSTYGNVNYAFGC 455
T+ G + I EGI R YI M Y ++G
Sbjct: 363 TIKGGTGSGDTHPRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGT 422
Query: 456 ADIACKNDSMISQAT--DAAKNADATIIVTGLDLSIEAEALDRN----DLYLPGFQTQLI 509
++ +S+ AK D +IV I E DR D YL +T LI
Sbjct: 423 IIKPKLPENFLSEKEIHKLAKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLI 479
Query: 510 NQVADA--AKGPVILVLMCAGGVDISFAKNNPKIKSILWAGYPGEEGGRAIADIVFGKYN 567
V+ +G ++VL+ G + + IL G+E GR +AD++ G+ N
Sbjct: 480 KTVSREFHEQGKKVIVLLNIGS-PVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRIN 538
Query: 568 PGGKLPLTWYEGNYVDKIPFTSMPLRSVDK-----------LPGRTYKFFDGPVVYPFGY 616
P GKLP T + +Y D +P + P D + R Y F Y FGY
Sbjct: 539 PSGKLPTT-FPRDYSD-VPSWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGY 596
Query: 617 GLSYTLFKY---NLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQTADLKCNDNYF 673
GLSYT F+Y N++F +++ V+
Sbjct: 597 GLSYTTFEYSDLNVSFDGETLRVQY----------------------------------- 621
Query: 674 TFEIEVQNVGKVDGSEVVMVYSKLP-GIAGTPIKQLIGFQRV-YVAAGQSAKVNFTLNVC 731
++N G G EV VY K P G P ++L F + + G+S +V + V
Sbjct: 622 ----RIENTGGRAGKEVSQVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVR 677
Query: 732 DSLRIIDFAANS-ILAAGAHTILLGDGAVSFPLQ 764
D + F ++ AG + + +G + + L+
Sbjct: 678 D---LASFNGEEWVVEAGEYEVRVGASSRNIKLK 708
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 183/695 (26%), Positives = 289/695 (41%), Gaps = 106/695 (15%)
Query: 100 GATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTFWSPNINVV-------- 151
G+T+F + ++++ +L ++ GQ + E +A I+V+
Sbjct: 72 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKAS-------------GIHVILGPVAGPL 118
Query: 152 -RDPRWGRVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAY 210
+ P+ GR E G DP++ G + G+Q V V A KHY
Sbjct: 119 GKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSV--------------GVQATAKHY--- 161
Query: 211 DLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRVNGIPTCADSKL 270
+ N + ++R S ++ + E + PF V + + +SVMCSYN+VN C D
Sbjct: 162 -ILNEQELNRETISSNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYT 219
Query: 271 LNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDYYTNFT 330
L ++ GY+++D ++ T V+S N + ++ G + G TN
Sbjct: 220 LQTVLKDQLGFPGYVMTDWNAQHTTVQS---ANSGLDMSMPGTDFNGNNRLWGPALTN-- 274
Query: 331 VGAVQQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQ--YKSLGKNDICNPQHIELAGEAA 388
AV +V + +D + ++ Y G Q Y S + H A
Sbjct: 275 --AVNSNQVPTSRVDD----MVTRILAAWYLTGQDQAGYPSFNISRNVQGNHKTNVRAIA 328
Query: 389 AQGIVLLKNDNGTLPFHN----ATIKTLAVVGPHANATKAMIGNYEGIPCRYISPMTGLS 444
GIVLLKND LP A + + A++G HA + + N +G C + G
Sbjct: 329 RDGIVLLKNDANILPLKKPASIAVVGSAAIIGNHARNSPSC--NDKG--CDDGALGMGWG 384
Query: 445 TYGNVNYAFGCADIACKNDSMISQAT--------------DAAKNADATIIVTGLD---- 486
+ G VNY + A N SQ T AA+ D I+ D
Sbjct: 385 S-GAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIVFITADSGEG 443
Query: 487 -LSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDISFAKNNPKIKSIL 545
+++E A DRN+L P + Q A VI+V+ G + + P++K+++
Sbjct: 444 YITVEGNAGDRNNLD-PWHNGNALVQAVAGANSNVIVVVHSVGAIILEQILALPQVKAVV 502
Query: 546 WAGYPGEEGGRAIADIVFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRTYKF 605
WAG P +E G A+ D+++G +P GKL T + S S + YK
Sbjct: 503 WAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSEGLFIDYKH 562
Query: 606 FDGPVVYP---FGYGLSYTLFKYNLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQ 662
FD + P FGYGLSYT F Y+ +L + T GA P P
Sbjct: 563 FDDANITPRYEFGYGLSYTKFNYS----------RLSVLSTAKSGPAT-GAVVPGGP--- 608
Query: 663 TADLKCNDNYFTFEIEVQNVGKVDGSEVVMVYSKLPGIA-GTPIKQLIGFQRVYVAAGQS 721
+DL N T +++ N G+V G+EV +Y P A TP KQL GF ++ + GQS
Sbjct: 609 -SDLF--QNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQS 665
Query: 722 AKVNFTLNVCDSLRIIDFAANS-ILAAGAHTILLG 755
F + D L D A+ ++ +G+ I +G
Sbjct: 666 GTATFNIRRRD-LSYWDTASQKWVVPSGSFGISVG 699
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 183/695 (26%), Positives = 289/695 (41%), Gaps = 106/695 (15%)
Query: 100 GATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTFWSPNINVV-------- 151
G+T+F + ++++ +L ++ GQ + E +A I+V+
Sbjct: 71 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKAS-------------GIHVILGPVAGPL 117
Query: 152 -RDPRWGRVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAY 210
+ P+ GR E G DP++ G + G+Q V V A KHY
Sbjct: 118 GKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSV--------------GVQATAKHY--- 160
Query: 211 DLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRVNGIPTCADSKL 270
+ N + ++R S ++ + E + PF V + + +SVMCSYN+VN C D
Sbjct: 161 -ILNEQELNRETISSNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYT 218
Query: 271 LNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDYYTNFT 330
L ++ GY+++D ++ T V+S N + ++ G + G TN
Sbjct: 219 LQTVLKDQLGFPGYVMTDWNAQHTTVQS---ANSGLDMSMPGTDFNGNNRLWGPALTN-- 273
Query: 331 VGAVQQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQ--YKSLGKNDICNPQHIELAGEAA 388
AV +V + +D + ++ Y G Q Y S + H A
Sbjct: 274 --AVNSNQVPTSRVDD----MVTRILAAWYLTGQDQAGYPSFNISRNVQGNHKTNVRAIA 327
Query: 389 AQGIVLLKNDNGTLPFHN----ATIKTLAVVGPHANATKAMIGNYEGIPCRYISPMTGLS 444
GIVLLKND LP A + + A++G HA + + N +G C + G
Sbjct: 328 RDGIVLLKNDANILPLKKPASIAVVGSAAIIGNHARNSPSC--NDKG--CDDGALGMGWG 383
Query: 445 TYGNVNYAFGCADIACKNDSMISQAT--------------DAAKNADATIIVTGLD---- 486
+ G VNY + A N SQ T AA+ D I+ D
Sbjct: 384 S-GAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIVFITADSGEG 442
Query: 487 -LSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDISFAKNNPKIKSIL 545
+++E A DRN+L P + Q A VI+V+ G + + P++K+++
Sbjct: 443 YITVEGNAGDRNNLD-PWHNGNALVQAVAGANSNVIVVVHSVGAIILEQILALPQVKAVV 501
Query: 546 WAGYPGEEGGRAIADIVFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRTYKF 605
WAG P +E G A+ D+++G +P GKL T + S S + YK
Sbjct: 502 WAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSEGLFIDYKH 561
Query: 606 FDGPVVYP---FGYGLSYTLFKYNLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQ 662
FD + P FGYGLSYT F Y+ +L + T GA P P
Sbjct: 562 FDDANITPRYEFGYGLSYTKFNYS----------RLSVLSTAKSGPAT-GAVVPGGP--- 607
Query: 663 TADLKCNDNYFTFEIEVQNVGKVDGSEVVMVYSKLPGIA-GTPIKQLIGFQRVYVAAGQS 721
+DL N T +++ N G+V G+EV +Y P A TP KQL GF ++ + GQS
Sbjct: 608 -SDLF--QNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPGQS 664
Query: 722 AKVNFTLNVCDSLRIIDFAANS-ILAAGAHTILLG 755
F + D L D A+ ++ +G+ I +G
Sbjct: 665 GTATFNIRRRD-LSYWDTASQKWVVPSGSFGISVG 698
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 114/422 (27%), Positives = 187/422 (44%), Gaps = 63/422 (14%)
Query: 34 YPVRAKDLVDRMTLAEKV-----------QQLGDLAYGVPRLGLPLYEWWSEALHGVSYI 82
Y RA +LV +MTL EK+ Q +G L GVPRLG+P ++ +G+ +
Sbjct: 50 YTSRAAELVAQMTLDEKISFVHWALDPDRQNVGYLP-GVPRLGIPELRA-ADGPNGIRLV 107
Query: 83 GRRTNTPPGTHFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMHN---LGNA 139
G+ AT+ P + ++F++++ G+ + + RA++ LG
Sbjct: 108 GQT---------------ATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMVLG-- 150
Query: 140 GLTFWSPNINVVRDPRWGRVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLK 199
P +N +R P GR ET EDP V R +V ++G+Q A L T
Sbjct: 151 ------PMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQG-------AGLMT---- 193
Query: 200 VSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRV 259
KH+AA + +N +RF ++ V EQ + E FE + G A+S MC+YN +
Sbjct: 194 ---TAKHFAANNQEN----NRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGL 245
Query: 260 NGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLD 319
NG P+C + +LLN +R W G+++SD + K L+ + + G
Sbjct: 246 NGKPSCGNDELLNNVLRTQWGFQGWVMSDWLATPGTDAITKGLDQEMGVELPGDVPKGEP 305
Query: 320 LDCGDYYTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLGKNDICNPQ 379
++ AV G V E + RS + + + G +P + + D Q
Sbjct: 306 SPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRP--ERDKAGAQ 363
Query: 380 HIELAGEAAAQGIVLLKNDNGTLPFHNATIKTLAVVGPHANATKAM-IGNYEGIPCRYIS 438
+ + A G VLL+N+ LP K++AV+GP A K +G+ +P +
Sbjct: 364 AVSR--KVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDSAAA 421
Query: 439 PM 440
P+
Sbjct: 422 PL 423
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 119/286 (41%), Gaps = 56/286 (19%)
Query: 492 EALDRNDLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDISFAKNNPKIKSILWAGYPG 551
E +DR +L LPG Q +LI+ VADA I+VL V + + K +++L YPG
Sbjct: 579 EGVDRPNLSLPGTQDKLISAVADANPN-TIVVLNTGSSVLMPWLS---KTRAVLDMWYPG 634
Query: 552 EEGGRAIADIVFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRT------YKF 605
+ G A A +++G NP GKL ++ + VD Y++
Sbjct: 635 QAGAEATAALLYGDVNPSGKLTQSFPAAENQHAVAGDPTSYPGVDNQQTYREGIHVGYRW 694
Query: 606 FDGPVV---YPFGYGLSYTLFKYNLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQ 662
FD V +PFG+GLSYT F + P
Sbjct: 695 FDKENVKPLFPFGHGLSYTSFTQ----------------------------SAPTVVRTS 726
Query: 663 TADLKCNDNYFTFEIEVQNVGKVDGSEVVMVY-SKLPGI-AGTPIKQLIGFQRVYVAAGQ 720
T LK + V+N GK G EVV Y P + A K+L+G+ +V +AAG+
Sbjct: 727 TGGLKVT-------VTVRNSGKRAGQEVVQAYLGASPNVTAPQAKKKLVGYTKVSLAAGE 779
Query: 721 SAKVNFTLNVCDSLRIIDF--AANSILAAGAHTILLGDGAVSFPLQ 764
+ V T+NV R + F AA G LL G+ S L+
Sbjct: 780 AKTV--TVNV--DRRQLQFWDAATDNWKTGTGNRLLQTGSSSADLR 821
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 153/556 (27%), Positives = 240/556 (43%), Gaps = 84/556 (15%)
Query: 93 HFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVV 151
H S V GAT FP I A+ + L K+IGQ + E A G+ + ++P + VV
Sbjct: 113 HGHSNVYGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA------TGIEWSFAPTVAVV 166
Query: 152 RDPRWGRVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVS---ACCKHYA 208
RD RWGR E+ EDP +V RY+ V G+Q D+ LK S A KH+
Sbjct: 167 RDDRWGRTYESYSEDPDLVKRYAGEMVTGIQ--------GDVGADFLKGSNRIATAKHFV 218
Query: 209 AYDLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRVNGIPTCADS 268
D +GVDR ++ + E+ + + + + + +G SVM S+N NG D
Sbjct: 219 G-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDK 274
Query: 269 KLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDL----DCGD 324
LL ++ G++VSD + +HKF+ E A+ + AG+D+ + +
Sbjct: 275 HLLTDVLKNQLGFDGFVVSDWN-------AHKFVEGCDLEQCAQAINAGVDVIMVPEHFE 327
Query: 325 YYTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLGKNDICNPQ----- 379
+ + TV V+ G + E+ I+ ++R +R G F S K + + +PQ
Sbjct: 328 AFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKS---KPSARPESQHPQWLGAA 384
Query: 380 -HIELAGEAAAQGIVLLKNDNGTLPFHNATIKTLAVVGPHANATKAMIGNYEGIPCRYIS 438
H LA EA + +VLLKN+ LP ++ + V G ANA G G +
Sbjct: 385 EHRTLAREAVRKSLVLLKNNESILPIKASS--RILVAGKGANAINMQAG---GWSVSWQG 439
Query: 439 PMTGLSTYGNVNYAF-GCADIACKNDSMI--SQATDAAKNADATIIVTGLDLSIEAEALD 495
S + N F G K I S++ + D I+V G E A
Sbjct: 440 TDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGE----EPYAEW 495
Query: 496 RNDLYLPGFQTQLINQVA-----DAAKGPVILVLMCAGGVDISFAKNNPKIKSILWAGYP 550
D+ L FQ + + +A A PV+ V + G + K + + A P
Sbjct: 496 FGDIELLEFQHETKHALALLKQLKADNIPVVTVFLS--GRPLWVNKELNASDAFVAAWLP 553
Query: 551 GEEGGRAIADIVF----GK--YNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRTYK 604
G E G +AD++ GK ++ GKL +W + Y D+ ++ L D P
Sbjct: 554 GSE-GEGVADVLLTNKQGKTQFDFTGKLSFSWPK--YDDQF---TLNLNDADYDP----- 602
Query: 605 FFDGPVVYPFGYGLSY 620
++ +GYGL+Y
Sbjct: 603 ------LFAYGYGLTY 612
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 151/556 (27%), Positives = 239/556 (42%), Gaps = 84/556 (15%)
Query: 93 HFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVV 151
H S V GAT FP I A+ + L K+IGQ + E A G+ + ++P + VV
Sbjct: 113 HGHSNVYGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA------TGIEWSFAPTVAVV 166
Query: 152 RDPRWGRVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVS---ACCKHYA 208
RD RWGR E+ EDP +V RY+ V G+Q D+ LK S A KH+
Sbjct: 167 RDDRWGRTYESYSEDPDLVKRYAGEMVTGIQ--------GDVGADFLKGSNRIATAKHFV 218
Query: 209 AYDLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRVNGIPTCADS 268
D +GVDR ++ + E+ + + + + + +G SVM S+N NG D
Sbjct: 219 G-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSVMASFNSWNGKRVHGDK 274
Query: 269 KLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDL----DCGD 324
LL ++ G++VSD + +HKF+ E A+ + AG+D+ + +
Sbjct: 275 HLLTDVLKNQLGFDGFVVSDWN-------AHKFVEGCDLEQCAQAINAGVDVIMVPEHFE 327
Query: 325 YYTNFTVGAVQQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLGKNDICNPQ----- 379
+ + TV V+ G + E+ I+ ++R +R G F S K + + +PQ
Sbjct: 328 AFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKS---KPSARPESQHPQWLGAA 384
Query: 380 -HIELAGEAAAQGIVLLKNDNGTLPFHNATIKTLAVVGPHANATKAMIGNYEGIPCRYIS 438
H LA EA + +VLLKN+ LP ++ + V G ANA G G +
Sbjct: 385 EHRTLAREAVRKSLVLLKNNESILPIKASS--RILVAGKGANAINMQAG---GWSVSWQG 439
Query: 439 PMTGLSTYGNVNYAF-GCADIACKNDSMI--SQATDAAKNADATIIVTGLDLSIEAEALD 495
S + N F G K I S++ + D I+V G E A
Sbjct: 440 TDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVVIGE----EPYAEW 495
Query: 496 RNDLYLPGFQTQLINQVA-----DAAKGPVILVLMCAGGVDISFAKNNPKIKSILWAGYP 550
D+ L FQ + + +A A PV+ V + G + K + + A P
Sbjct: 496 FGDIELLEFQHETKHALALLKQLKADNIPVVTVFLS--GRPLWVNKELNASDAFVAAWLP 553
Query: 551 GEEGGRAIADIVF------GKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRTYK 604
G E G +AD++ +++ GKL +W + Y D+ ++ L D P
Sbjct: 554 GSE-GEGVADVLLTNKQGKTQFDFTGKLSFSWPK--YDDQF---TLNLNDADYDP----- 602
Query: 605 FFDGPVVYPFGYGLSY 620
++ +GYGL+Y
Sbjct: 603 ------LFAYGYGLTY 612
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 160/637 (25%), Positives = 262/637 (41%), Gaps = 87/637 (13%)
Query: 27 FCDAKLPYPVRAKDLVDRMTLAEKVQQL------------------GDLAYG---VPRLG 65
+ DA P R DL+ RMTLAEK+ Q+ G L G VPR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 66 LPLYEWWSEALHGV--SYIGRRTNTP-----PGTHFDSEVPGATSFPTVILTTASFNESL 118
EW + + G + + R P H + V GAT FP + A+ + L
Sbjct: 65 ATAKEW-QDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYL 123
Query: 119 WKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVVRDPRWGRVMETPGEDPFVVGRYSVNY 177
K+IG+ + E RA G+ + ++P I V RDPRWGR E+ ED +V +
Sbjct: 124 VKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QSMTEL 176
Query: 178 VRGLQDVEGQENTADLS--TRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIET 235
+ GLQ ++ T+ + KV+AC KH+ + VD + ++ + ++ +
Sbjct: 177 IPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVG----DGGTVDGINENNTIINREGLMN 232
Query: 236 FNLPFEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTI 295
++P + S+VM SY+ NG+ A+ L+ ++ G+++SD + I I
Sbjct: 233 IHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI 292
Query: 296 VESHKFLNDTKEEAVARVLKAGLDL----DCGDYYTNFTVGAVQQGKVRETDIDRSLRFL 351
+D A +L AGLD+ + + + G V G + + ID ++ +
Sbjct: 293 TTPAG--SDYSYSVKASIL-AGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRI 349
Query: 352 YVVLMRLGYFDGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKN-----DNGTLPFHN 406
V +G F+ +P + +H +LA EAA + +VLLKN D LP
Sbjct: 350 LRVKFTMGLFE-NPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPK 408
Query: 407 ATIKTLAVVGPHANATKAMIGNYEGIPCRYISPMTGLSTYGNVNYAFGCADIACKNDSMI 466
K L V G HA+ G + TG +T G A + +
Sbjct: 409 KAPKIL-VAGSHADNLGYQCGGW----TIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVF 463
Query: 467 SQATDA----AKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVIL 522
++ DA + I+ G E + D +L +P + V + +L
Sbjct: 464 AENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGVRCATVL 522
Query: 523 VLMCAGGVDISFAKNNPKIKSILWAGYPGEEGGRAIADIVFGKYNPGGKLPLTWYEGNYV 582
+ V A ++ +++ A PG E G+ + D +FG + G+LP TW+
Sbjct: 523 ISGRPVVVQPLLAASD----ALVAAWLPGSE-GQGVTDALFGDFGFTGRLPRTWF----- 572
Query: 583 DKIPFTSMPLRSVDKLPGRTYKFFDGPVVYPFGYGLS 619
+SVD+LP P ++ GYGL+
Sbjct: 573 ----------KSVDQLPMNVGDAHYDP-LFRLGYGLT 598
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 160/637 (25%), Positives = 262/637 (41%), Gaps = 87/637 (13%)
Query: 27 FCDAKLPYPVRAKDLVDRMTLAEKVQQL------------------GDLAYG---VPRLG 65
+ DA P R DL+ RMTLAEK+ Q+ G L G VPR G
Sbjct: 5 YKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRKG 64
Query: 66 LPLYEWWSEALHGV--SYIGRRTNTP-----PGTHFDSEVPGATSFPTVILTTASFNESL 118
EW + + G + + R P H + V GAT FP + A+ + L
Sbjct: 65 ATAKEW-QDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDPYL 123
Query: 119 WKKIGQTVSTEARAMHNLGNAGLTF-WSPNINVVRDPRWGRVMETPGEDPFVVGRYSVNY 177
K+IG+ + E RA G+ + ++P I V RDPRWGR E+ ED +V +
Sbjct: 124 VKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QSMTEL 176
Query: 178 VRGLQDVEGQENTADLS--TRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIET 235
+ GLQ ++ T+ + KV+AC KH+ + VD + ++ + ++ +
Sbjct: 177 IPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVG----DGGTVDGINENNTIINREGLMN 232
Query: 236 FNLPFEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTI 295
++P + S+VM SY+ NG+ A+ L+ ++ G+++SD + I I
Sbjct: 233 IHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRI 292
Query: 296 VESHKFLNDTKEEAVARVLKAGLDL----DCGDYYTNFTVGAVQQGKVRETDIDRSLRFL 351
+D A +L AGLD+ + + + G V G + + ID ++ +
Sbjct: 293 TTPAG--SDYSYSVKASIL-AGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRI 349
Query: 352 YVVLMRLGYFDGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKN-----DNGTLPFHN 406
V +G F+ +P + +H +LA EAA + +VLLKN D LP
Sbjct: 350 LRVKFTMGLFE-NPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPK 408
Query: 407 ATIKTLAVVGPHANATKAMIGNYEGIPCRYISPMTGLSTYGNVNYAFGCADIACKNDSMI 466
K L V G HA+ G + TG +T G A + +
Sbjct: 409 KAPKIL-VAGSHADNLGYQCGGW----TIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVF 463
Query: 467 SQATDA----AKNADATIIVTGLDLSIEAEALDRNDLYLPGFQTQLINQVADAAKGPVIL 522
++ DA + I+ G E + D +L +P + V + +L
Sbjct: 464 AENPDAEFVKSGGFSYAIVAVGEHPYTETKG-DNLNLTIPEPGLSTVQAVCGGVRCATVL 522
Query: 523 VLMCAGGVDISFAKNNPKIKSILWAGYPGEEGGRAIADIVFGKYNPGGKLPLTWYEGNYV 582
+ V A ++ +++ A PG E G+ + D +FG + G+LP TW+
Sbjct: 523 ISGRPVVVQPLLAASD----ALVAAWLPGSE-GQGVTDALFGDFGFTGRLPRTWF----- 572
Query: 583 DKIPFTSMPLRSVDKLPGRTYKFFDGPVVYPFGYGLS 619
+SVD+LP P ++ GYGL+
Sbjct: 573 ----------KSVDQLPMNVGDAHYDP-LFRLGYGLT 598
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 187/447 (41%), Gaps = 52/447 (11%)
Query: 39 KDLVDRMTLAEKVQQLGDLAY----GVPRLGLPLYEWWSEALHGVSYIGRRTNTPPGTHF 94
+ L+ + EK+ L + + + RLG+P S+ +G+ GT F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----------GTKF 55
Query: 95 DSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTFWSPNINVVRDP 154
VP FP ++F+ L + G+ ++ E+ A NA + P N+ R P
Sbjct: 56 FDGVPSGC-FPNGTGLASTFDRDLLETAGKLMAKESIAK----NAAVIL-GPTTNMQRGP 109
Query: 155 RWGRVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDN 214
GR E+ EDP++ G + + V+G+Q EG ++A KH+ DL++
Sbjct: 110 LGGRGFESFSEDPYLAGMATSSVVKGMQG-EG-------------IAATVKHFVCNDLED 155
Query: 215 WKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQT 274
RF +S V+E+ + E + PF + V+ + +M +YN+VNG KLL
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDI 211
Query: 275 IRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDYYTNFTVGAV 334
+R +W G ++SD T + K D + R L + T V
Sbjct: 212 LRDEWKWDGMLMSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDV 271
Query: 335 QQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLGKNDICNPQHIELAGEAAAQGIVL 394
+VR+ + + ++F+ L + G + P+ S + +L + AA IVL
Sbjct: 272 DD-RVRQ--VLKMIKFVVDNLEKTGIVENGPESTSNNTKETS-----DLLRKIAADSIVL 323
Query: 395 LKNDNGTLPFHNATIKTLAVVGPHANATKAMIGNYEGIPCRY-ISPMTGLSTY--GNVNY 451
LKN N LP + V+GP+A A + G + Y +SP G+ V+Y
Sbjct: 324 LKNKNNILPLKKE--DNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGIVNKLGKEVDY 381
Query: 452 AFGCADIACKNDSMISQATDAAKNADA 478
G S DAAK ADA
Sbjct: 382 TVGAYSHKSIGGLAESSLIDAAKPADA 408
Score = 99.4 bits (246), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 132/309 (42%), Gaps = 58/309 (18%)
Query: 439 PMTGL-STYGNVNYAFGCADIACKNDSMISQATDAAKNADATIIVTGLDLSIEAEALDRN 497
P +GL +G + G A +D I A + A D +++ GL+ E E DR
Sbjct: 537 PTSGLVGEFGAGGFQAGVIK-AIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRE 595
Query: 498 DLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDISFAKNNPKIK---SILWAGYPGEEG 554
++ LP +L+ V A VI+ G + F P ++ +++ A Y G E
Sbjct: 596 NMDLPKRTNELVRAVLKANPNTVIV---NQSGTPVEF----PWLEDANALVQAWYGGNEL 648
Query: 555 GRAIADIVFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPG-------RTYKFFD 607
G AIAD+++G P GKL L+W D F + + G R Y+
Sbjct: 649 GNAIADVLYGDVVPNGKLSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQ 707
Query: 608 GPVVYPFGYGLSYTLFKYNLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQTADLK 667
V +PFGYGLSYT F+ +++ D K
Sbjct: 708 RKVAFPFGYGLSYTTFELDIS------------------------------------DFK 731
Query: 668 CNDNYFTFEIEVQNVG-KVDGSEVVMVY-SKLPGIAGTPIKQLIGFQRVYVAAGQSAKVN 725
D+ ++V+N G K GSEVV VY S L P+K+L GF++V++ G+ VN
Sbjct: 732 VTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVN 791
Query: 726 FTLNVCDSL 734
L + D++
Sbjct: 792 IDLELKDAI 800
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 131/309 (42%), Gaps = 58/309 (18%)
Query: 439 PMTGL-STYGNVNYAFGCADIACKNDSMISQATDAAKNADATIIVTGLDLSIEAEALDRN 497
P +GL +G + G A +D I A + A D +++ GL+ E E DR
Sbjct: 537 PTSGLVGEFGAGGFQAGVIK-AIDDDEEIRNAAELAAKHDKAVLIIGLNGEWETEGYDRE 595
Query: 498 DLYLPGFQTQLINQVADAAKGPVILVLMCAGGVDISFAKNNPKIK---SILWAGYPGEEG 554
+ LP +L+ V A VI + G + F P ++ +++ A Y G E
Sbjct: 596 NXDLPKRTNELVRAVLKANPNTVI---VNQSGTPVEF----PWLEDANALVQAWYGGNEL 648
Query: 555 GRAIADIVFGKYNPGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPG-------RTYKFFD 607
G AIAD+++G P GKL L+W D F + + G R Y+
Sbjct: 649 GNAIADVLYGDVVPNGKLSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQ 707
Query: 608 GPVVYPFGYGLSYTLFKYNLAFSNKSIDVKLDKFQVCRDLNYTNGATKPQCPAVQTADLK 667
V +PFGYGLSYT F+ +++ D K
Sbjct: 708 RKVAFPFGYGLSYTTFELDIS------------------------------------DFK 731
Query: 668 CNDNYFTFEIEVQNVG-KVDGSEVVMVY-SKLPGIAGTPIKQLIGFQRVYVAAGQSAKVN 725
D+ ++V+N G K GSEVV VY S L P+K+L GF++V++ G+ VN
Sbjct: 732 VTDDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVN 791
Query: 726 FTLNVCDSL 734
L + D++
Sbjct: 792 IDLELKDAI 800
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 114/447 (25%), Positives = 181/447 (40%), Gaps = 52/447 (11%)
Query: 39 KDLVDRMTLAEKVQQLGDLAY----GVPRLGLPLYEWWSEALHGVSYIGRRTNTPPGTHF 94
+ L+ + EK+ L + + + RLG+P S+ +G+ GT F
Sbjct: 7 EQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----------GTKF 55
Query: 95 DSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTFWSPNINVVRDP 154
VP FP ++F+ L + G+ + E+ A NA + P N R P
Sbjct: 56 FDGVPSGC-FPNGTGLASTFDRDLLETAGKLXAKESIAK----NAAVIL-GPTTNXQRGP 109
Query: 155 RWGRVMETPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDN 214
GR E+ EDP++ G + + V+G Q EG ++A KH+ DL++
Sbjct: 110 LGGRGFESFSEDPYLAGXATSSVVKGXQG-EG-------------IAATVKHFVCNDLED 155
Query: 215 WKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRVNGIPTCADSKLLNQT 274
RF +S V+E+ + E + PF + V+ + + +YN+VNG KLL
Sbjct: 156 ----QRFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDI 211
Query: 275 IRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDCGDYYTNFTVGAV 334
+R +W G + SD T + K D + R L + T V
Sbjct: 212 LRDEWKWDGXLXSDWFGTYTTAAAIKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDV 271
Query: 335 QQGKVRETDIDRSLRFLYVVLMRLGYFDGSPQYKSLGKNDICNPQHIELAGEAAAQGIVL 394
+VR+ + + ++F+ L + G + P+ S + +L + AA IVL
Sbjct: 272 DD-RVRQ--VLKXIKFVVDNLEKTGIVENGPESTSNNTKETS-----DLLRKIAADSIVL 323
Query: 395 LKNDNGTLPFHNATIKTLAVVGPHANATKAMIGNYEGIPCRY-ISPMTGLSTY--GNVNY 451
LKN N LP + V+GP+A A + G Y +SP G+ V+Y
Sbjct: 324 LKNKNNILPLKKE--DNIIVIGPNAKAKTSSGGGSASXNSYYVVSPYEGIVNKLGKEVDY 381
Query: 452 AFGCADIACKNDSMISQATDAAKNADA 478
G S DAAK ADA
Sbjct: 382 TVGAYSHKSIGGLAESSLIDAAKPADA 408
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 114/264 (43%), Gaps = 49/264 (18%)
Query: 200 VSACCKHYAAY---DLDNWKGVDRF-HFDSKVTEQDMIETFNLPFEMCVREGDASSVMCS 255
+++ KH+ + D+D+ G+ H ++ E ++ PF+ + G A VM +
Sbjct: 216 IASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTA 269
Query: 256 Y------------NRVNG----IPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESH 299
+ ++++G +P K++ +R + +G IV+D +++ I +
Sbjct: 270 HVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHF 329
Query: 300 KFLNDTKEEAVARVLKAGLD----------LDCGDYYTNFTVG---AVQQGKVRETDIDR 346
+EEAV +KAG+D L + AV+ G + E I+
Sbjct: 330 -----GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINN 384
Query: 347 SLRFLYVVLMRLGYF-----DGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKNDNGT 401
S+ + + ++ G + D + + + K + + QH++ + A + + +LKN+ T
Sbjct: 385 SVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHT 444
Query: 402 LPFHNATIKTLAVVGPHANATKAM 425
LPF + +V P+ T ++
Sbjct: 445 LPFKPKKGSRILIVAPYEEQTASI 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 114/264 (43%), Gaps = 49/264 (18%)
Query: 200 VSACCKHYAAY---DLDNWKGVDRF-HFDSKVTEQDMIETFNLPFEMCVREGDASSVMCS 255
+++ KH+ + D+D+ G+ H ++ E ++ PF+ + G A VM +
Sbjct: 220 IASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTA 273
Query: 256 Y------------NRVNG----IPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESH 299
+ ++++G +P K++ +R + +G IV++ +++ I +
Sbjct: 274 HVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHF 333
Query: 300 KFLNDTKEEAVARVLKAGLD----------LDCGDYYTNFTVG---AVQQGKVRETDIDR 346
+EEAV +KAG+D L + AV+ G + E I+
Sbjct: 334 -----GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINN 388
Query: 347 SLRFLYVVLMRLGYF-----DGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKNDNGT 401
S+ + + ++ G + D + + + K + + QH++ + A + + +LKN+ T
Sbjct: 389 SVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHT 448
Query: 402 LPFHNATIKTLAVVGPHANATKAM 425
LPF + +V P+ T ++
Sbjct: 449 LPFKPKKGSRILIVAPYEEQTASI 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 114/264 (43%), Gaps = 49/264 (18%)
Query: 200 VSACCKHYAAY---DLDNWKGVDRF-HFDSKVTEQDMIETFNLPFEMCVREGDASSVMCS 255
+++ KH+ + D+D+ G+ H ++ E ++ PF+ + G A VM +
Sbjct: 190 IASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVEL-----YPFQKAIDAG-ADMVMTA 243
Query: 256 Y------------NRVNG----IPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESH 299
+ ++++G +P K++ +R + +G IV++ +++ I +
Sbjct: 244 HVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHF 303
Query: 300 KFLNDTKEEAVARVLKAGLD----------LDCGDYYTNFTVG---AVQQGKVRETDIDR 346
+EEAV +KAG+D L + AV+ G + E I+
Sbjct: 304 -----GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINN 358
Query: 347 SLRFLYVVLMRLGYF-----DGSPQYKSLGKNDICNPQHIELAGEAAAQGIVLLKNDNGT 401
S+ + + ++ G + D + + + K + + QH++ + A + + +LKN+ T
Sbjct: 359 SVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHT 418
Query: 402 LPFHNATIKTLAVVGPHANATKAM 425
LPF + +V P+ T ++
Sbjct: 419 LPFKPKKGSRILIVAPYEEQTASI 442
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 10/124 (8%)
Query: 200 VSACCKHYAAY-DLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDA-SSVMCSYN 257
V+ C KH+ + D + E D E PF + E A + Y+
Sbjct: 173 VAPCAKHFPGHGDTHQDSHLALPRVSKSRAELDAGEL--APFRALLPETPAIXTAHIVYD 230
Query: 258 RVNG-IPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKA 316
++ P ++L +R +W G IV+D Q I N + EA R L+A
Sbjct: 231 ALDAEHPATLSPRILTGLLREEWGYDGVIVTDSXGXQAI-----DANYGRGEAAVRALRA 285
Query: 317 GLDL 320
G DL
Sbjct: 286 GADL 289
>pdb|1V4N|A Chain A, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|B Chain B, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
pdb|1V4N|C Chain C, Structure Of 5'-Deoxy-5'-Methylthioadenosine Phosphorylase
Homologue From Sulfolobus Tokodaii
Length = 281
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 570 GKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRTYKFFDGPVV 611
G L L + G++V +P + +D GRTY FFDGP V
Sbjct: 95 GSLRLDYKPGDFV-------VPNQFIDMTKGRTYTFFDGPTV 129
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 568 PGGKLPLTWYEGNYVDKIPFTSMPLRSVDKLPGRTYKFFDGPVVYPFGYGLSYTLFKYNL 627
PG + TWY G Y + I TSM V L + + + P LS T + NL
Sbjct: 230 PGSSVYSTWYNGGY-NTISGTSMATPHVSGLAAKIWA--ENPS-------LSNTQLRSNL 279
Query: 628 AFSNKSIDVK 637
KS+D+K
Sbjct: 280 QERAKSVDIK 289
>pdb|2A1R|A Chain A, Crystal Structure Of Parn Nuclease Domain
pdb|2A1R|B Chain B, Crystal Structure Of Parn Nuclease Domain
pdb|2A1S|A Chain A, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|B Chain B, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|C Chain C, Crystal Structure Of Native Parn Nuclease Domain
pdb|2A1S|D Chain D, Crystal Structure Of Native Parn Nuclease Domain
Length = 430
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 39 KDLVDRMTLAEKVQQLGDLAYGVPRL----GLPLYEWWSEALHGVSY 81
KD+++ +LAE ++L + + P++ G P Y+ SE LH Y
Sbjct: 335 KDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGY 381
>pdb|3TY1|A Chain A, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
pdb|3TY1|B Chain B, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
pdb|3TY1|C Chain C, Crystal Structure Of A Hypothetical Aldose 1-Epimerase
(Kpn_04629) From Klebsiella Pneumoniae Subsp. Pneumoniae
Mgh 78578 At 1.90 A Resolution
Length = 384
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 661 VQTADLKCNDNYFTFEIEVQNVGKVDGSEVVMVYSK 696
+ + LK D+ F+ E +V + GK +GS+++ ++SK
Sbjct: 21 INSDQLKVKDHAFSIEQKVLHGGKQEGSKILTIHSK 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,869,473
Number of Sequences: 62578
Number of extensions: 1055652
Number of successful extensions: 2139
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2053
Number of HSP's gapped (non-prelim): 40
length of query: 769
length of database: 14,973,337
effective HSP length: 106
effective length of query: 663
effective length of database: 8,340,069
effective search space: 5529465747
effective search space used: 5529465747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)